Murinae	ANCESTRAL SPECIES	17	ENSGT00530000063631.a	ENSGT00950000183211.a.b	ENSGT00940000158784	ENSGT00390000018729.a.b	ENSGT00390000018729.a.a	ENSGT01080000257333.E.o.a	ENSGT00390000007354	ENSGT00940000158788	ENSGT00550000074846	ENSGT00390000006029	ENSGT00390000016167	ENSGT00940000156997	ENSGT00390000018830	ENSGT01030000234535.C	ENSGT01030000234539.a.a.b.b #21	ENSGT00940000157302 #22	ENSGT00940000155805 #23	ENSGT00510000047648 #24	ENSGT00940000160474 #25	ENSGT00940000153499.a #26	ENSGT00940000159814 #28	ENSGT00940000153432.A.b #29	ENSGT00940000159872 #31	ENSGT00390000008772 #32	ENSGT00390000018741 #34	ENSGT00950000183010.a.b.a.b.b.b #35	ENSGT00940000159394 #36	ENSGT01030000234626.D	ENSGT00940000155402.a.b	ENSGT01100000263809	ENSGT00940000168426
Mus	ANCESTRAL SPECIES	19	ENSGT00530000063631.a	ENSGT00950000183211.a.b	ENSGT00940000158784	ENSGT00390000018729.a.b	ENSGT00390000018729.a.a	ENSGT01080000257333.E.o.a	ENSGT00390000007354	ENSGT00940000158788	ENSGT00550000074846	ENSGT00390000006029	ENSGT00390000016167	ENSGT00940000156997	ENSGT00390000018830	ENSGT01030000234535.C	ENSGT01030000234539.a.a.b.b #21	ENSGT00940000157302 #22	ENSGT00940000155805 #23	ENSGT00510000047648.c #24	ENSGT00940000160474 #25	ENSGT00940000153499.a #26	ENSGT00940000159814 #28	ENSGT00940000153432.A.b #29	ENSGT00940000159872 #31	ENSGT00390000008772 #32	ENSGT00390000018741 #34	ENSGT00950000183010.a.b.a.b.b.b #35	ENSGT00940000159394 #36	ENSGT01030000234626.D	ENSGT00940000155402.a.b	ENSGT01100000263809	ENSGT00940000168426
Mus_A	ANCESTRAL SPECIES	19	ENSGT01100000265037	ENSGT00950000183211.a.b	ENSGT00940000158784	ENSGT00390000018729.a.b	ENSGT00390000018729.a.a	ENSGT01080000257333.E.o.a	ENSGT00390000007354	ENSGT00940000158788	ENSGT00550000074846	ENSGT00390000006029	ENSGT00390000016167	ENSGT00940000156997	ENSGT00390000018830	ENSGT01030000234535.C	ENSGT01030000234539.a.a.b.b #21	ENSGT00940000157302 #22	ENSGT00940000155805 #23	ENSGT00510000047648.c #24	ENSGT00940000160474 #25	ENSGT00940000153499.a #26	ENSGT00940000159814 #28	ENSGT00940000153432.A.b #29	ENSGT00940000159872 #31	ENSGT00390000008772 #32	ENSGT00390000018741 #34	ENSGT00950000183010.a.b.a.b.b.b #35	ENSGT00940000159394 #36	ENSGT01030000234626.D	ENSGT00940000155402.a.b	ENSGT01100000263809	ENSGT00940000168426
Mus_B	ANCESTRAL SPECIES	19	ENSGT00950000183211.a.b	ENSGT00940000158784	ENSGT00950000183010.a.b.a.a.a.a.a.b.l.d ##35	ENSGT00390000018729.a.b	ENSGT00390000018729.a.a	ENSGT01080000257333.E.o.a	ENSGT00390000007354	ENSGT00940000158788	ENSGT00550000074846	ENSGT00390000006029	ENSGT00390000016167	ENSGT00940000156997	ENSGT00390000018830	ENSGT01030000234535.C	ENSGT01030000234539.a.a.b.b #21	ENSGT00940000157302 #22	ENSGT00940000155805 #23	ENSGT00510000047648.c #24	ENSGT00940000160474 #25	ENSGT00940000153499.a #26	ENSGT00940000159814 #28	ENSGT00940000153432.A.b #29	ENSGT00940000159872 #31	ENSGT00390000008772 #32	ENSGT00390000018741 #34	ENSGT00950000183010.a.b.a.b.b.b #35	ENSGT00940000159394 #36	ENSGT01030000234626.D	ENSGT00940000155402.a.b	ENSGT01100000263809	ENSGT00940000168426
Mus_C	ANCESTRAL SPECIES	16	ENSGT00950000183211.a.b	ENSGT00940000158784	ENSGT00950000183010.a.b.a.a.a.a.a.b.l.d ##35	ENSGT00390000018729.a.b	ENSGT00390000018729.a.a	ENSGT01080000257333.E.o.a	ENSGT00390000007354	ENSGT00940000158788	ENSGT00550000074846	ENSGT00390000006029	ENSGT00390000016167	ENSGT00940000156997	ENSGT00390000018830	ENSGT01030000234535.C	ENSGT01030000234539.a.a.b.b #21	ENSGT00940000157302 #22	ENSGT00940000155805 #23	ENSGT00510000047648.c #24	ENSGT00940000160474 #25	ENSGT00940000153499.a #26	ENSGT00940000159814 #28	ENSGT00940000153432.A.b #29	ENSGT00940000159872 #31	ENSGT00390000008772 #32	ENSGT00390000018741 #34	ENSGT00950000183010.a.b.a.b.b.b #35	ENSGT00940000159394 #36	ENSGT01030000234626.D	ENSGT00940000155402.a.b	ENSGT01100000263809	ENSGT00950000183005.a.a
Steppe mouse	MODERN SPECIES	3130															ENSMSIG00000018626 #21	Katnal2 (ENSMSIG00000018633) #22	Hdhd2 (ENSMSIG00000018790) #23	ENSMSIG00000018819 #24	Skor2 (ENSMSIG00000018834) #25	Smad2 (ENSMSIG00000018887) #26	ENSMSIG00000018946 #27	Zbtb7c (ENSMSIG00000018967) #28	Ctif (ENSMSIG00000019005) #29	ENSMSIG00000019110 #30	Smad7 (ENSMSIG00000019123) #31	Dym (ENSMSIG00000019180) #32	ENSMSIG00000019247 #33	BC031181 (ENSMSIG00000019259) #34	Rpl17 (ENSMSIG00000019275) #35	Lipg (ENSMSIG00000019321) #36	ENSMSIG00000019349 #37
spretus	MODERN SPECIES	9	Eola1 (MGP_SPRETEiJ_G0023343)	Setbp1 (MGP_SPRETEiJ_G0023342)	MGP_SPRETEiJ_G0023341 ##35	Slc14a2 (MGP_SPRETEiJ_G0023340)	Slc14a1 (MGP_SPRETEiJ_G0023339)	Siglec15 (MGP_SPRETEiJ_G0023338)	Epg5 (MGP_SPRETEiJ_G0023337)	Pstpip2 (MGP_SPRETEiJ_G0023336)	Atp5a1 (MGP_SPRETEiJ_G0023335)	Haus1 (MGP_SPRETEiJ_G0023334)	8030462N17Rik (MGP_SPRETEiJ_G0023333)	Loxhd1 (MGP_SPRETEiJ_G0023331)	St8sia5 (MGP_SPRETEiJ_G0023330)	MGP_SPRETEiJ_G0023329	Pias2 (MGP_SPRETEiJ_G0023328) #21	Katnal2 (MGP_SPRETEiJ_G0023327) #22	Hdhd2 (MGP_SPRETEiJ_G0023326) #23	MGP_SPRETEiJ_G0023325 #24	Skor2 (MGP_SPRETEiJ_G0023324) #25	Smad2 (MGP_SPRETEiJ_G0023323) #26	Zbtb7c (MGP_SPRETEiJ_G0023322) #28	Ctif (MGP_SPRETEiJ_G0023321) #29	Smad7 (MGP_SPRETEiJ_G0023320) #31	Dym (MGP_SPRETEiJ_G0023319) #32	BC031181 (MGP_SPRETEiJ_G0023318) #34	MGP_SPRETEiJ_G0023317 ##35	Lipg (MGP_SPRETEiJ_G0023316) #36	Acaa2 (MGP_SPRETEiJ_G0023315)	Myo5b (MGP_SPRETEiJ_G0023314)	Cfap53 (MGP_SPRETEiJ_G0023313)	Cxxc1 (MGP_SPRETEiJ_G0023312)
Mouse	MODERN SPECIES	9	Pard6g (ENSMUSG00000056214)	Setbp1 (ENSMUSG00000024548)	Gm6133 (ENSMUSG00000090451) ##35	Slc14a2 (ENSMUSG00000024552)	Slc14a1 (ENSMUSG00000059336)	Siglec15 (ENSMUSG00000091055)	Epg5 (ENSMUSG00000039840)	Pstpip2 (ENSMUSG00000025429)	Atp5a1 (ENSMUSG00000025428)	Haus1 (ENSMUSG00000041840)	8030462N17Rik (ENSMUSG00000047466)	Rnf165 (ENSMUSG00000025427)	Loxhd1 (ENSMUSG00000032818)	St8sia5 (ENSMUSG00000025425)	Pias2 (ENSMUSG00000025423) #21	Katnal2 (ENSMUSG00000025420) #22	Hdhd2 (ENSMUSG00000025421) #23	Ier3ip1 (ENSMUSG00000090000)	Skor2 (ENSMUSG00000091519) #25	Smad2 (ENSMUSG00000024563) #26	Zbtb7c (ENSMUSG00000044646) #28	Ctif (ENSMUSG00000052928) #29	Smad7 (ENSMUSG00000025880) #31	Dym (ENSMUSG00000035765) #32	BC031181 (ENSMUSG00000036299) #34	Rpl17 (ENSMUSG00000062328) #35	Lipg (ENSMUSG00000053846) #36	Acaa2 (ENSMUSG00000036880)	Myo5b (ENSMUSG00000025885)	Cfap53 (ENSMUSG00000035394)	Mbd1 (ENSMUSG00000024561)
Ryukyu mouse	MODERN SPECIES	9	Setbp1 (MGP_CAROLIEiJ_G0022429)	MGP_CAROLIEiJ_G0022428 ##35	Slc14a2 (MGP_CAROLIEiJ_G0022427)	Slc14a1 (MGP_CAROLIEiJ_G0022426)	Siglec15 (MGP_CAROLIEiJ_G0022425)	MGP_CAROLIEiJ_G0022424	Pstpip2 (MGP_CAROLIEiJ_G0022423)	Atp5a1 (MGP_CAROLIEiJ_G0022422)	Haus1 (MGP_CAROLIEiJ_G0022421)	8030462N17Rik (MGP_CAROLIEiJ_G0022420)	Rnf165 (MGP_CAROLIEiJ_G0022419)	Loxhd1 (MGP_CAROLIEiJ_G0022418)	St8sia5 (MGP_CAROLIEiJ_G0022417)	MGP_CAROLIEiJ_G0022416	Pias2 (MGP_CAROLIEiJ_G0022415) #21	Katnal2 (MGP_CAROLIEiJ_G0022414) #22	Hdhd2 (MGP_CAROLIEiJ_G0022413) #23	MGP_CAROLIEiJ_G0022412 #24	Skor2 (MGP_CAROLIEiJ_G0022411) #25	Smad2 (MGP_CAROLIEiJ_G0022410) #26	Zbtb7c (MGP_CAROLIEiJ_G0022409) #28	Ctif (MGP_CAROLIEiJ_G0022408) #29	Smad7 (MGP_CAROLIEiJ_G0022407) #31	Dym (MGP_CAROLIEiJ_G0022406) #32	BC031181 (MGP_CAROLIEiJ_G0022405) #34	Rpl17 (MGP_CAROLIEiJ_G0022404) #35	Lipg (MGP_CAROLIEiJ_G0022403) #36	Acaa2 (MGP_CAROLIEiJ_G0022402)	Myo5b (MGP_CAROLIEiJ_G0022401)	Cfap53 (MGP_CAROLIEiJ_G0022400)	Cxxc1 (MGP_CAROLIEiJ_G0022399)
Shrew mouse	MODERN SPECIES	6	Setbp1 (MGP_PahariEiJ_G0019158)	MGP_PahariEiJ_G0019157 ##35	Slc14a2 (MGP_PahariEiJ_G0019156)	Slc14a1 (MGP_PahariEiJ_G0019155)	Siglec15 (MGP_PahariEiJ_G0019154)	Epg5 (MGP_PahariEiJ_G0019153)	Pstpip2 (MGP_PahariEiJ_G0019152)	Atp5a1 (MGP_PahariEiJ_G0019151)	Haus1 (MGP_PahariEiJ_G0019150)	8030462N17Rik (MGP_PahariEiJ_G0019149)	Rnf165 (MGP_PahariEiJ_G0019148)	MGP_PahariEiJ_G0019147	St8sia5 (MGP_PahariEiJ_G0019146)	MGP_PahariEiJ_G0019145	Pias2 (MGP_PahariEiJ_G0019144) #21	Katnal2 (MGP_PahariEiJ_G0019143) #22	Hdhd2 (MGP_PahariEiJ_G0019142) #23	MGP_PahariEiJ_G0019141 #24	Skor2 (MGP_PahariEiJ_G0019140) #25	Smad2 (MGP_PahariEiJ_G0019139) #26	Zbtb7c (MGP_PahariEiJ_G0019138) #28	Ctif (MGP_PahariEiJ_G0019137) #29	Smad7 (MGP_PahariEiJ_G0019136) #31	Dym (MGP_PahariEiJ_G0019135) #32	BC031181 (MGP_PahariEiJ_G0019134) #34	Rpl17 (MGP_PahariEiJ_G0019133) #35	Lipg (MGP_PahariEiJ_G0019132) #36	Acaa2 (MGP_PahariEiJ_G0019131)	Myo5b (MGP_PahariEiJ_G0019130)	Cfap53 (MGP_PahariEiJ_G0019129)	MGP_PahariEiJ_G0019128
Rat	MODERN SPECIES	9	ENSRNOG00000065450	Setbp1 (ENSRNOG00000016208)	Slc14a2 (ENSRNOG00000061714)	Slc14a1 (ENSRNOG00000016753)	Siglec15 (ENSRNOG00000033588)	Epg5 (ENSRNOG00000052894)	Pstpip2 (ENSRNOG00000016987)	Atp5f1a (ENSRNOG00000017032)	Haus1 (ENSRNOG00000017067)	ENSRNOG00000063575	RGD1308601 (ENSRNOG00000017215)	Rnf165 (ENSRNOG00000048824)	Loxhd1 (ENSRNOG00000017410)	St8sia5 (ENSRNOG00000022691)	Pias2 (ENSRNOG00000017493) #21	Katnal2 (ENSRNOG00000017788) #22	Ier3ip1 (ENSRNOG00000043171) #23	Skor2 (ENSRNOG00000018006) #25	Smad2 (ENSRNOG00000018140) #26	Zbtb7c (ENSRNOG00000047924) #28	ENSRNOG00000067472	Ctif (ENSRNOG00000018342) #29	Smad7 (ENSRNOG00000018359) #31	Dym (ENSRNOG00000018425) #32	Rpl17 (ENSRNOG00000018680) ##35	Slc25a6 (ENSRNOG00000042387)	Lipg (ENSRNOG00000018694) #36	Acaa2 (ENSRNOG00000013766)	Myo5b (ENSRNOG00000014104)	Mbd1 (ENSRNOG00000024104)	Cfap53 (ENSRNOG00000014585)