Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00390000018634	ENSGT00940000155086.C #7	ENSGT00940000153804.A #8	ENSGT00950000183117.b #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT00960000189637 #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660 #34	ENSGT00390000005318.b.b.a.g #35	ENSGT00520000055567.a.b
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00390000018634	ENSGT00940000155086.C #7	ENSGT00940000153804.A #8	ENSGT00950000183117.b #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT00960000189637 #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660 #34	ENSGT00390000005318.b.b.a.g #35	ENSGT00520000055567.a.b
Marmotini	ANCESTRAL SPECIES	14	ENSGT00390000018634	ENSGT00940000155086.C #7	ENSGT00940000153804.A #8	ENSGT00950000183117.b #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT00960000189637 #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660 #34	ENSGT00390000005318.b.b.a.g #35	ENSGT00520000055567.a.b
Alpin marmot	MODERN SPECIES	6	OTOF (ENSMMMG00000021193) #7	DRC1 (ENSMMMG00000021257) #8	SELENOI (ENSMMMG00000021266) #9	ADGRF3 (ENSMMMG00000021278) #10	HADHB (ENSMMMG00000021287) #11	HADHA (ENSMMMG00000021297) #12	GAREM2 (ENSMMMG00000021301) #13	ENSMMMG00000021304 #14	KIF3C (ENSMMMG00000021315) #15	ASXL2 (ENSMMMG00000021326) #16	ENSMMMG00000021345 #17	ENSMMMG00000021366 #18	DNMT3A (ENSMMMG00000021507) #19	ENSMMMG00000021550 #20	EFR3B (ENSMMMG00000021552) #21	DNAJC27 (ENSMMMG00000021572) #22	ADCY3 (ENSMMMG00000021582) #23	CENPO (ENSMMMG00000021625) #24	PTRHD1 (ENSMMMG00000021628) #25	NCOA1 (ENSMMMG00000021650) #26	ENSMMMG00000021686 #27	ITSN2 (ENSMMMG00000021696) #28	ENSMMMG00000021782 #29	FAM228B (ENSMMMG00000021792) #30	PFN4 (ENSMMMG00000021805) #31	TP53I3 (ENSMMMG00000021823) #32	FKBP1B (ENSMMMG00000021830) #33	WDCP (ENSMMMG00000021855) #34	MFSD2B (ENSMMMG00000021873) #35	ENSMMMG00000021893 #36	ATAD2B (ENSMMMG00000021898) #37
Marmotini_b	ANCESTRAL SPECIES	17	ENSGT00390000018634	ENSGT00940000155086.C #7	ENSGT00940000153804.A #8	ENSGT00950000183117.b #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT00960000189637 #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660 #34	ENSGT00390000005318.b.b.a.g #35	ENSGT00520000055567.a.b
Arctic ground squirrel	MODERN SPECIES		FAM166C (ENSUPAG00010007420)	OTOF (ENSUPAG00010007436) #7	DRC1 (ENSUPAG00010007561) #8	SELENOI (ENSUPAG00010007592) #9	ADGRF3 (ENSUPAG00010007600) #10	HADHB (ENSUPAG00010007620) #11	ENSUPAG00010007631 #12	GAREM2 (ENSUPAG00010007652) #13	RAB10 (ENSUPAG00010007668) #14	KIF3C (ENSUPAG00010007680) #15	ASXL2 (ENSUPAG00010007692) #16	ENSUPAG00010007737 #18	DNMT3A (ENSUPAG00010008081) #19	POMC (ENSUPAG00010008168) #20	EFR3B (ENSUPAG00010008174) #21	DNAJC27 (ENSUPAG00010008208) #22	ADCY3 (ENSUPAG00010008224) #23	CENPO (ENSUPAG00010008319) #24	PTRHD1 (ENSUPAG00010008340) #25	NCOA1 (ENSUPAG00010008344) #26	ENSUPAG00010008420 #27	ITSN2 (ENSUPAG00010008430) #28	ENSUPAG00010008599 #30	PFN4 (ENSUPAG00010008634) #31	ENSUPAG00010008668 #32	SF3B6 (ENSUPAG00010008671)	FKBP1B (ENSUPAG00010008674) #33	WDCP (ENSUPAG00010008689) #34	MFSD2B (ENSUPAG00010008700) #35	UBXN2A (ENSUPAG00010008734)	ATAD2B (ENSUPAG00010008759) #37
Squirrel	MODERN SPECIES	93	OTOF (ENSSTOG00000020549) #7	DRC1 (ENSSTOG00000001637) #8	SELENOI (ENSSTOG00000001622) #9	ADGRF3 (ENSSTOG00000001610) #10	HADHB (ENSSTOG00000001601) #11	HADHA (ENSSTOG00000001593) #12	GAREM2 (ENSSTOG00000022734) #13	RAB10 (ENSSTOG00000023160) #14	KIF3C (ENSSTOG00000013740) #15	ASXL2 (ENSSTOG00000013729) #16	ENSSTOG00000034335 ##17	ENSSTOG00000015511 #18	DNMT3A (ENSSTOG00000022154) #19	POMC (ENSSTOG00000006150) #20	EFR3B (ENSSTOG00000023043) #21	DNAJC27 (ENSSTOG00000006080) #22	ADCY3 (ENSSTOG00000006049) #23	CENPO (ENSSTOG00000006039) #24	PTRHD1 (ENSSTOG00000006030) #25	NCOA1 (ENSSTOG00000005990) #26	ITSN2 (ENSSTOG00000003181) #28	ENSSTOG00000003159 #29	FAM228B (ENSSTOG00000033164) #30	PFN4 (ENSSTOG00000003151) #31	TP53I3 (ENSSTOG00000003142) #32	SF3B6 (ENSSTOG00000027077)	FKBP1B (ENSSTOG00000034202) #33	WDCP (ENSSTOG00000032257) #34	MFSD2B (ENSSTOG00000003123) #35	UBXN2A (ENSSTOG00000030412)	ATAD2B (ENSSTOG00000021066) #37
Eurasian red squirrel	MODERN SPECIES	5	DRC1 (ENSSVLG00005019360) #8	SELENOI (ENSSVLG00005019494) #9	ENSSVLG00005019538	ADGRF3 (ENSSVLG00005019818) #10	HADHB (ENSSVLG00005020328) #11	HADHA (ENSSVLG00005020540) #12	GAREM2 (ENSSVLG00005020605) #13	RAB10 (ENSSVLG00005020645) #14	KIF3C (ENSSVLG00005020692) #15	ENSSVLG00005020731	ASXL2 (ENSSVLG00005020772) #16	ENSSVLG00005021051 #18	DNMT3A (ENSSVLG00005021301) #19	POMC (ENSSVLG00005021550) #20	EFR3B (ENSSVLG00005021623) #21	DNAJC27 (ENSSVLG00005022027) #22	ENSSVLG00005022076	ENSSVLG00005022096	ADCY3 (ENSSVLG00005022153) #23	CENPO (ENSSVLG00005022224) #24	PTRHD1 (ENSSVLG00005022312) #25	NCOA1 (ENSSVLG00005022362) #26	ENSSVLG00005022466	ITSN2 (ENSSVLG00005022588) #28	ENSSVLG00005023133 #29	FAM228B (ENSSVLG00005023199) #30	PFN4 (ENSSVLG00005023293) #31	TP53I3 (ENSSVLG00005023330) #32	ENSSVLG00005023387	FKBP1B (ENSSVLG00005023436) #33	WDCP (ENSSVLG00005023512) #34
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00390000018634	ENSGT00940000155086.C #7	ENSGT00940000153804.A #8	ENSGT00950000183117.b #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00390000005908	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660 #34	ENSGT00390000005318.b.b.a.h.a ##35	ENSGT00520000055567.a.b	ENSGT00550000074694.b #37	ENSGT00940000158824
Hystricomorpha_a	ANCESTRAL SPECIES	31	ENSGT00390000018634	ENSGT00940000155086.C #7	ENSGT00940000153804.A #8	ENSGT00950000183117.b #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00390000005908	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660 #34	ENSGT00390000005318.b.b.a.g #35	ENSGT00520000055567.a.b	ENSGT00550000074694.b #37	ENSGT00940000158824
Hystricomorpha_b	ANCESTRAL SPECIES	26	ENSGT00940000155086.C #7	ENSGT00940000153804.A #8	ENSGT00950000183117.b #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT01000000214622	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00390000005908	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660 #34	ENSGT00390000005318.b.b.a.g #35	ENSGT00520000055567.a.b	ENSGT00550000074694.b #37	ENSGT00940000158824
Long-tailed chinchilla	MODERN SPECIES	176	OTOF (ENSCLAG00000009174) #7	DRC1 (ENSCLAG00000016214) #8	SELENOI (ENSCLAG00000014310) #9	ENSCLAG00000011221 #10	HADHB (ENSCLAG00000010359) #11	HADHA (ENSCLAG00000009530) #12	GAREM2 (ENSCLAG00000013430) #13	RAB10 (ENSCLAG00000010979) #14	KIF3C (ENSCLAG00000015470) #15	ASXL2 (ENSCLAG00000011428) #16	ENSCLAG00000009921	ENSCLAG00000008767 #18	DNMT3A (ENSCLAG00000011272) #19	POMC (ENSCLAG00000010165) #20	EFR3B (ENSCLAG00000005527) #21	DNAJC27 (ENSCLAG00000008212) #22	ADCY3 (ENSCLAG00000013780) #23	CENPO (ENSCLAG00000007716) #24	PTRHD1 (ENSCLAG00000006505) #25	NCOA1 (ENSCLAG00000012434) #26	ITSN2 (ENSCLAG00000013590) #28	ENSCLAG00000005849 #29	FAM228B (ENSCLAG00000004984) #30	PFN4 (ENSCLAG00000004618) #31	SF3B6 (ENSCLAG00000014512)	FKBP1B (ENSCLAG00000011181) #33	WDCP (ENSCLAG00000008275) #34	MFSD2B (ENSCLAG00000014189) #35	UBXN2A (ENSCLAG00000014610)	ATAD2B (ENSCLAG00000005215) #37	KLHL29 (ENSCLAG00000005598)
Degu	MODERN SPECIES	60	OTOF (ENSODEG00000007924) #7	DRC1 (ENSODEG00000011420) #8	SELENOI (ENSODEG00000007845) #9	HADHB (ENSODEG00000008596) #11	HADHA (ENSODEG00000009366) #12	GAREM2 (ENSODEG00000008492) #13	RAB10 (ENSODEG00000008075) #14	ENSODEG00000007394	KIF3C (ENSODEG00000008275) #15	ENSODEG00000009191	ASXL2 (ENSODEG00000009627) #16	ENSODEG00000012930	ENSODEG00000009839 #18	POMC (ENSODEG00000010910) #20	EFR3B (ENSODEG00000007566) #21	DNAJC27 (ENSODEG00000007488) #22	ADCY3 (ENSODEG00000007982) #23	PTRHD1 (ENSODEG00000007805) #25	NCOA1 (ENSODEG00000008181) #26	ENSODEG00000007584	ENSODEG00000007545 #28	PFN4 (ENSODEG00000008303) #31	ENSODEG00000007981	SF3B6 (ENSODEG00000009547)	ENSODEG00000010244	ENSODEG00000008882	ENSODEG00000007455	ENSODEG00000007644	ENSODEG00000008643	ENSODEG00000009834 #37	ENSODEG00000008786
Guinea pig	MODERN SPECIES	18	OTOF (ENSCPOG00000000331) #7	DRC1 (ENSCPOG00000000327) #8	SELENOI (ENSCPOG00000033910) #9	ADGRF3 (ENSCPOG00000000855) #10	HADHB (ENSCPOG00000005418) #11	HADHA (ENSCPOG00000005945) #12	GAREM2 (ENSCPOG00000033262) #13	RAB10 (ENSCPOG00000038345) #14	KIF3C (ENSCPOG00000037818) #15	ENSCPOG00000031398	ASXL2 (ENSCPOG00000007343) #16	ENSCPOG00000004733 #18	DNMT3A (ENSCPOG00000020900) #19	POMC (ENSCPOG00000004474) #20	EFR3B (ENSCPOG00000013235) #21	DNAJC27 (ENSCPOG00000006843) #22	ADCY3 (ENSCPOG00000005564) #23	CENPO (ENSCPOG00000005563) #24	PTRHD1 (ENSCPOG00000005561) #25	NCOA1 (ENSCPOG00000001117) #26	ENSCPOG00000031710	ITSN2 (ENSCPOG00000013505) #28	FAM228B (ENSCPOG00000030306) #30	PFN4 (ENSCPOG00000009683) #31	SF3B6 (ENSCPOG00000008016)	FKBP1B (ENSCPOG00000039379) #33	WDCP (ENSCPOG00000019263) #34	MFSD2B (ENSCPOG00000022662) ##35	UBXN2A (ENSCPOG00000038294)	ATAD2B (ENSCPOG00000014176) #37	KLHL29 (ENSCPOG00000014174)
Naked mole-rat female	MODERN SPECIES	23	ADGRF3 (ENSHGLG00000008001) #10	HADHB (ENSHGLG00000006268) #11	HADHA (ENSHGLG00000014003) #12	GAREM2 (ENSHGLG00000018233) #13	ENSHGLG00000044435	ENSHGLG00000047199 #14	ENSHGLG00000035830	ENSHGLG00000033377 #15	ASXL2 (ENSHGLG00000006048) #16	ENSHGLG00000019126	ENSHGLG00000020949	ENSHGLG00000033034 #18	DNMT3A (ENSHGLG00000014901) #19	POMC (ENSHGLG00000046270) #20	EFR3B (ENSHGLG00000009366) #21	DNAJC27 (ENSHGLG00000043432) #22	ENSHGLG00000010620 #23	ENSHGLG00000009240 #24	ENSHGLG00000004625	ENSHGLG00000037668	ENSHGLG00000036802	ENSHGLG00000040642	ENSHGLG00000008294	ENSHGLG00000020802	ENSHGLG00000043418	ENSHGLG00000036362	ENSHGLG00000042181	ENSHGLG00000044364	ENSHGLG00000040918	ENSHGLG00000004550	ENSHGLG00000044673