Euteleostomi	ANCESTRAL SPECIES	259													ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT00940000182083	ENSGT01070000253766.A.a.a.b	ENSGT00940000158680	ENSGT00390000016034	ENSGT00940000158349
Sarcopterygii	ANCESTRAL SPECIES	266													ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT00940000182083	ENSGT01070000253766.A.a.a.b	ENSGT00940000158680	ENSGT00390000016034	ENSGT00940000158349
Tetrapoda	ANCESTRAL SPECIES	78	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00990000203917
Amniota	ANCESTRAL SPECIES	1	ENSGT00390000004380	ENSGT00950000185082	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823
Mammalia	ANCESTRAL SPECIES	84							ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823
Theria	ANCESTRAL SPECIES	13	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27
Eutheria	ANCESTRAL SPECIES	2	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Boreoeutheria	ANCESTRAL SPECIES	15	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Primates	ANCESTRAL SPECIES	14	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Haplorrhini	ANCESTRAL SPECIES	15	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b.o.b #10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00940000161541 #9	ENSGT01030000234626.A.b.o.b #10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00390000003860.h.b	ENSGT00940000153739.a.b #15	ENSGT00940000154256.l.b	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a #17	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00390000010170.a.b.d	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00990000205444	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT01030000234626.A.b.o.b #10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00390000003860.h.b	ENSGT00940000153739.a.b #15	ENSGT00940000154256.l.b	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a #17	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00950000182802.A.b	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00390000010170.a.b.d	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00990000205444	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT01030000234626.A.b.o.b #10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00390000003860.h.b	ENSGT00940000153739.a.b #15	ENSGT00940000154256.l.b	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a #17	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00950000182802.A.b	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00390000010170.a.b.d	ENSGT00940000157133 #22	ENSGT00390000012679.m.a #23	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT01030000234626.A.b.o.b #10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00390000003860.h.b.a.a	ENSGT00940000153739.a.b #15	ENSGT00940000154256.l.b	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a #17	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00950000182802.A.b	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00390000010170.a.b.d	ENSGT00940000157133 #22	ENSGT00390000012679.m.a #23	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT00940000161541 #9	ENSGT01030000234626.A.b.o.b #10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00390000003860.h.b.a.a	ENSGT00940000153739.a.b #15	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a #17	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00950000182802.A.b	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00390000010170.a.b.d	ENSGT00940000157133 #22	ENSGT00390000012679.m.a #23	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Cercopithecinae_d	ANCESTRAL SPECIES	23	ENSGT00940000161541 #9	ENSGT01030000234626.A.b.o.b #10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00390000003860.h.b.a.a	ENSGT00940000153739.a.b #15	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a #17	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00950000182802.A.b	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00390000010170.a.b.d	ENSGT00940000157133 #22	ENSGT00390000012679.m.a #23	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Drill	MODERN SPECIES	340	DRC1 (ENSMLEG00000037987) #7	SELENOI (ENSMLEG00000041082) #8	ADGRF3 (ENSMLEG00000036680) #9	HADHB (ENSMLEG00000003668) #10	ENSMLEG00000038228 #11	HADHA (ENSMLEG00000022425) #12	GAREM2 (ENSMLEG00000032967) #13	RAB10 (ENSMLEG00000039320) #14	KIF3C (ENSMLEG00000036529) #15	ASXL2 (ENSMLEG00000042828) #16	ENSMLEG00000043138 #17	ENSMLEG00000035719 #18	DNMT3A (ENSMLEG00000034751) #19	POMC (ENSMLEG00000009557) #20	EFR3B (ENSMLEG00000031167) #21	DNAJC27 (ENSMLEG00000029813) #22	ENSMLEG00000029014 #23	ADCY3 (ENSMLEG00000037538) #24	CENPO (ENSMLEG00000041293) #25	PTRHD1 (ENSMLEG00000030314) #26	NCOA1 (ENSMLEG00000032601) #27	ITSN2 (ENSMLEG00000033491) #28	FAM228A (ENSMLEG00000011620) #29	FAM228B (ENSMLEG00000034625) #30	PFN4 (ENSMLEG00000009647) #31	TP53I3 (ENSMLEG00000041240) #32	SF3B6 (ENSMLEG00000019896) #33	FKBP1B (ENSMLEG00000036634) #34	WDCP (ENSMLEG00000039249) #35	MFSD2B (ENSMLEG00000037599) #36	UBXN2A (ENSMLEG00000013519) #37
Sooty mangabey	MODERN SPECIES	542	ADGRF3 (ENSCATG00000036098) #9	HADHB (ENSCATG00000037244) #10	HADHA (ENSCATG00000030823) #12	GAREM2 (ENSCATG00000040150) #13	RAB10 (ENSCATG00000002631) #14	ENSCATG00000030449	KIF3C (ENSCATG00000029067) #15	ASXL2 (ENSCATG00000041653) #16	ENSCATG00000013048 #17	ENSCATG00000031389 #18	DNMT3A (ENSCATG00000003150) #19	ENSCATG00000019562	POMC (ENSCATG00000041120) #20	EFR3B (ENSCATG00000000318) #21	ENSCATG00000043764	DNAJC27 (ENSCATG00000029231) #22	ENSCATG00000028816 #23	ADCY3 (ENSCATG00000006719) #24	CENPO (ENSCATG00000035791) #25	PTRHD1 (ENSCATG00000033690) #26	NCOA1 (ENSCATG00000035964) #27	ITSN2 (ENSCATG00000017804) #28	PFN4 (ENSCATG00000032266) #31	TP53I3 (ENSCATG00000040448) #32	SF3B6 (ENSCATG00000030936) #33	FKBP1B (ENSCATG00000016638) #34	WDCP (ENSCATG00000030463) #35	MFSD2B (ENSCATG00000040488) #36	UBXN2A (ENSCATG00000007176) #37	ATAD2B (ENSCATG00000035587)	ENSCATG00000036009
Olive baboon	MODERN SPECIES	5	DRC1 (ENSPANG00000020443) #7	SELENOI (ENSPANG00000011258) #8	ADGRF3 (ENSPANG00000016225) #9	HADHB (ENSPANG00000018040) #10	HADHA (ENSPANG00000019056) #12	GAREM2 (ENSPANG00000026153) #13	RAB10 (ENSPANG00000009860) #14	ENSPANG00000049061	ENSPANG00000035790	KIF3C (ENSPANG00000000518) #15	ASXL2 (ENSPANG00000007355) #16	DTNB (ENSPANG00000017000)	DNMT3A (ENSPANG00000009987) #19	POMC (ENSPANG00000041108) #20	EFR3B (ENSPANG00000004979) #21	DNAJC27 (ENSPANG00000023972) #22	ADCY3 (ENSPANG00000021654) #24	CENPO (ENSPANG00000018043) #25	PTRHD1 (ENSPANG00000006781) #26	ENSPANG00000000336	NCOA1 (ENSPANG00000016229) #27	ITSN2 (ENSPANG00000020766) #28	FAM228B (ENSPANG00000017003) #30	PFN4 (ENSPANG00000015702) #31	TP53I3 (ENSPANG00000019585) #32	SF3B6 (ENSPANG00000021963) #33	FKBP1B (ENSPANG00000031212) #34	WDCP (ENSPANG00000024219) #35	MFSD2B (ENSPANG00000005498) #36	UBXN2A (ENSPANG00000013688) #37	ATAD2B (ENSPANG00000021884)
Macaca	ANCESTRAL SPECIES	17	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b.o.b #10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00390000003860.h.b.a.a	ENSGT00940000153739.a.b #15	ENSGT00940000154256.l.b	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a #17	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00390000012679.m.a #23	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Macaca_a	ANCESTRAL SPECIES	15	ENSGT00940000161541 #9	ENSGT01030000234626.A.b.o.b #10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000164709.a.b.b.a.b.b.a.b.a.a.a.b	ENSGT00940000156975.u #14	ENSGT00390000003860.h.b.a.a	ENSGT00940000153739.a.b #15	ENSGT01100000263493.a.b.a.a.a.b.a.a.b.b.b.b.c.b.a	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00940000161627.a.a.a.b.b.b.b.a.b.a.b.b	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT01100000263765.a.a.a.b	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Crab-eating macaque	MODERN SPECIES	4	ENSMFAG00000053961	HADHA (ENSMFAG00000039817) #12	ENSMFAG00000060925	RAB10 (ENSMFAG00000001674) #14	ENSMFAG00000044444	KIF3C (ENSMFAG00000002881) #15	ENSMFAG00000049777	ASXL2 (ENSMFAG00000039252) #16	ENSMFAG00000053114	ENSMFAG00000038698 #18	DNMT3A (ENSMFAG00000031180) #19	ENSMFAG00000048533	ENSMFAG00000063119	POMC (ENSMFAG00000000551) #20	EFR3B (ENSMFAG00000035813) #21	DNAJC27 (ENSMFAG00000061704) #22	ADCY3 (ENSMFAG00000038483) #24	CENPO (ENSMFAG00000031589) #25	PTRHD1 (ENSMFAG00000040267) #26	NCOA1 (ENSMFAG00000046147) #27	ITSN2 (ENSMFAG00000041820) #28	FAM228A (ENSMFAG00000001199) #29	FAM228B (ENSMFAG00000031377) #30	PFN4 (ENSMFAG00000026171) #31	ENSMFAG00000060644	TP53I3 (ENSMFAG00000030253) #32	SF3B6 (ENSMFAG00000038178) #33	FKBP1B (ENSMFAG00000003240) #34	WDCP (ENSMFAG00000031254) #35	MFSD2B (ENSMFAG00000031201) #36	UBXN2A (ENSMFAG00000038617) #37
Rhesus	MODERN SPECIES	4	HADHA (ENSMMUG00000004380) #12	GAREM2 (ENSMMUG00000004378) #13	ENSMMUG00000059135	ENSMMUG00000052700	RAB10 (ENSMMUG00000039805) #14	KIF3C (ENSMMUG00000019293) #15	ENSMMUG00000062814	ASXL2 (ENSMMUG00000001377) #16	DTNB (ENSMMUG00000016587)	DNMT3A (ENSMMUG00000013565) #19	ENSMMUG00000050208	ENSMMUG00000056636	ENSMMUG00000061252	POMC (ENSMMUG00000055135) #20	EFR3B (ENSMMUG00000016461) #21	DNAJC27 (ENSMMUG00000009603) #22	ADCY3 (ENSMMUG00000009600) #24	CENPO (ENSMMUG00000009599) #25	PTRHD1 (ENSMMUG00000060020) #26	NCOA1 (ENSMMUG00000020838) #27	ITSN2 (ENSMMUG00000009408) #28	FAM228A (ENSMMUG00000009407) #29	FAM228B (ENSMMUG00000009406) #30	PFN4 (ENSMMUG00000009405) #31	ENSMMUG00000060535	TP53I3 (ENSMMUG00000001283) #32	SF3B6 (ENSMMUG00000001282) #33	FKBP1B (ENSMMUG00000052726) #34	WDCP (ENSMMUG00000012340) #35	MFSD2B (ENSMMUG00000012337) #36	UBXN2A (ENSMMUG00000006487) #37
Pig-tailed macaque	MODERN SPECIES	561	SELENOI (ENSMNEG00000010725) #8	ADGRF3 (ENSMNEG00000031948) #9	HADHB (ENSMNEG00000044887) #10	HADHA (ENSMNEG00000044721) #12	GAREM2 (ENSMNEG00000034057) #13	RAB10 (ENSMNEG00000028491) #14	ENSMNEG00000031146	KIF3C (ENSMNEG00000032633) #15	ASXL2 (ENSMNEG00000030154) #16	ENSMNEG00000044519	ENSMNEG00000041605 #17	ENSMNEG00000032051 #18	DNMT3A (ENSMNEG00000038454) #19	EFR3B (ENSMNEG00000033229) #21	POMC (ENSMNEG00000025401) #20	DNAJC27 (ENSMNEG00000035671) #22	ENSMNEG00000027756 #23	ADCY3 (ENSMNEG00000045167) #24	CENPO (ENSMNEG00000044763) #25	PTRHD1 (ENSMNEG00000035044) #26	NCOA1 (ENSMNEG00000039179) #27	ITSN2 (ENSMNEG00000036756) #28	ENSMNEG00000032466	FAM228A (ENSMNEG00000012997) #29	FAM228B (ENSMNEG00000030342) #30	PFN4 (ENSMNEG00000039662) #31	TP53I3 (ENSMNEG00000040818) #32	SF3B6 (ENSMNEG00000029050) #33	FKBP1B (ENSMNEG00000044742) #34	WDCP (ENSMNEG00000043270) #35	MFSD2B (ENSMNEG00000042041) #36
Vervet Monkey	MODERN SPECIES	5	OTOF (ENSCSAG00000009067)	ENSCSAG00000008776 #7	ENSCSAG00000008771 #7	SELENOI (ENSCSAG00000008763) #8	HADHB (ENSCSAG00000008753) #10	HADHA (ENSCSAG00000008736) #12	GAREM2 (ENSCSAG00000008714) #13	RAB10 (ENSCSAG00000008695) #14	KIF3C (ENSCSAG00000008688) #15	ASXL2 (ENSCSAG00000008663) #16	DTNB (ENSCSAG00000008613)	ENSCSAG00000008593 #19	DNMT3A (ENSCSAG00000008584) #19	POMC (ENSCSAG00000008563) #20	EFR3B (ENSCSAG00000008553) #21	DNAJC27 (ENSCSAG00000008536) #22	ENSCSAG00000008524 #23	ADCY3 (ENSCSAG00000008514) #24	CENPO (ENSCSAG00000008498) #25	PTRHD1 (ENSCSAG00000008490) #26	NCOA1 (ENSCSAG00000008479) #27	ITSN2 (ENSCSAG00000008453) #28	FAM228A (ENSCSAG00000008425) #29	FAM228B (ENSCSAG00000008416) #30	PFN4 (ENSCSAG00000008406) #31	TP53I3 (ENSCSAG00000008398) #32	SF3B6 (ENSCSAG00000008390) #33	FKBP1B (ENSCSAG00000008381) #34	WDCP (ENSCSAG00000008372) #35	MFSD2B (ENSCSAG00000008345) #36	UBXN2A (ENSCSAG00000008300) #37
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES	205							ENSGT00940000155745	ENSGT00940000157581	ENSGT00940000153446.b	ENSGT00940000161171	ENSGT00910000147240	ENSGT00940000153340.B.k.b	ENSGT00910000147230	ENSGT00940000157575	ENSGT00390000002143.b #21	ENSGT00940000157133.i #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00990000205444	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Golden snub-nosed monkey	MODERN SPECIES	3280														PUM2 (ENSRROG00000045386)	EFR3B (ENSRROG00000026400) #21	ENSRROG00000031027 #22	ADCY3 (ENSRROG00000043637) #24	CENPO (ENSRROG00000042705) #25	PTRHD1 (ENSRROG00000029627) #26	NCOA1 (ENSRROG00000041376) #27	ITSN2 (ENSRROG00000039852) #28	FAM228A (ENSRROG00000035076) #29	FAM228B (ENSRROG00000035188) #30	PFN4 (ENSRROG00000041874) #31	TP53I3 (ENSRROG00000042766) #32	SF3B6 (ENSRROG00000011368) #33	FKBP1B (ENSRROG00000030393) #34	WDCP (ENSRROG00000018119) #35	MFSD2B (ENSRROG00000040798) #36	UBXN2A (ENSRROG00000036471) #37	ATAD2B (ENSRROG00000031703)
Black snub-nosed monkey	MODERN SPECIES	1130								MATN3 (ENSRBIG00000040709)	LAPTM4A (ENSRBIG00000014447)	SDC1 (ENSRBIG00000034487)	ENSRBIG00000036594	ENSRBIG00000025027	ENSRBIG00000044692	PUM2 (ENSRBIG00000044880)	EFR3B (ENSRBIG00000029715) #21	ENSRBIG00000041935 #22	ADCY3 (ENSRBIG00000034802) #24	CENPO (ENSRBIG00000040211) #25	PTRHD1 (ENSRBIG00000032190) #26	NCOA1 (ENSRBIG00000035295) #27	ENSRBIG00000025719	ITSN2 (ENSRBIG00000033688) #28	FAM228A (ENSRBIG00000036877) #29	FAM228B (ENSRBIG00000037047) #30	PFN4 (ENSRBIG00000007265) #31	TP53I3 (ENSRBIG00000035469) #32	SF3B6 (ENSRBIG00000039598) #33	FKBP1B (ENSRBIG00000040662) #34	WDCP (ENSRBIG00000039830) #35	MFSD2B (ENSRBIG00000037244) #36	UBXN2A (ENSRBIG00000042933) #37
Rhinopithecus	ANCESTRAL SPECIES	231				ENSGT00390000008171.w	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A	ENSGT00390000016366	ENSGT00940000161739	ENSGT00390000015473	ENSGT00390000007182	ENSGT01030000234513.B.b.i	ENSGT01050000244864.B.b	ENSGT00940000157028	ENSGT00940000157133.j #22	ENSGT00940000162379	ENSGT00940000157358	ENSGT00390000002283	ENSGT00730000111087	ENSGT00940000153433.B.b	ENSGT00940000160341.b	ENSGT00940000154335.a.k	ENSGT00910000147414	ENSGT00940000153716.A	ENSGT00950000183079.A.b.c.b	ENSGT00940000160956
Black snub-nosed monkey	MODERN SPECIES	100	MYEOV (ENSRBIG00000038697)	ENSRBIG00000029980	SMIM38 (ENSRBIG00000027460)	TPCN2 (ENSRBIG00000037035)	MRGPRF (ENSRBIG00000030308)	IGHMBP2 (ENSRBIG00000044249)	MRPL21 (ENSRBIG00000044044)	CPT1A (ENSRBIG00000007771)	TESMIN (ENSRBIG00000041391)	GAL (ENSRBIG00000043331)	PPP6R3 (ENSRBIG00000044728)	ENSRBIG00000044426	GJB2 (ENSRBIG00000022663)	GJA3 (ENSRBIG00000044002)	ZMYM2 (ENSRBIG00000035593)	ENSRBIG00000034122 #22	ZMYM5 (ENSRBIG00000037855)	ENSRBIG00000029211	PSPC1 (ENSRBIG00000036057)	MPHOSPH8 (ENSRBIG00000020664)	ENSRBIG00000038327	ENSRBIG00000039121	ENSRBIG00000002487	ZDHHC20 (ENSRBIG00000043965)	MICU2 (ENSRBIG00000024714)	FGF9 (ENSRBIG00000038855)
Golden snub-nosed monkey	MODERN SPECIES	776												IFT88 (ENSRROG00000043952)	CRYL1 (ENSRROG00000036395)	GJB2 (ENSRROG00000015772)	ZMYM2 (ENSRROG00000038158)	ENSRROG00000029284 #22	ZMYM5 (ENSRROG00000044339)	PSPC1 (ENSRROG00000036334)	MPHOSPH8 (ENSRROG00000044267)	ENSRROG00000045764	ENSRROG00000033720	ZDHHC20 (ENSRROG00000043537)	ENSRROG00000038683	MICU2 (ENSRROG00000038184)
Hominoidea	ANCESTRAL SPECIES	18	ENSGT00940000161541 #9	ENSGT01030000234626.A.b.o.b #10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00390000003860.h.b	ENSGT00940000153739.a.b #15	ENSGT00940000154256.l.b	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a #17	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00390000010170.a.b.d	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00990000205444	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Hominidae	ANCESTRAL SPECIES	19	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b.o.b #10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00390000003860.h.b	ENSGT00940000153739.a.b #15	ENSGT00940000154256.l.b	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00390000010170.a.b.d	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00990000205444	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	18	ENSGT00940000161541 #9	ENSGT01030000234626.A.b.o.b #10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000168009	ENSGT00390000003860.h.b	ENSGT00940000153739.a.b #15	ENSGT00940000154256.l.b	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00390000010170.a.b.d	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00990000205444	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00940000161541 #9	ENSGT01030000234626.A.b.o.b #10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000168009	ENSGT00390000003860.h.b	ENSGT00940000153739.a.b #15	ENSGT00940000154256.l.b	ENSGT00520000055578.a.b #16	ENSGT00940000164272	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00390000010170.a.b.d	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00990000205444	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Pan	ANCESTRAL SPECIES	17	ENSGT01030000234626.A.b.o.b #10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000164415	ENSGT00940000156975.u #14	ENSGT00940000168009	ENSGT00390000003860.h.b	ENSGT00940000153739.a.b #15	ENSGT00940000154256.l.b	ENSGT00520000055578.a.b #16	ENSGT00940000164272	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00390000010170.a.b.d	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00990000205444	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Bonobo	MODERN SPECIES	14	HADHB (ENSPPAG00000040869) #10	HADHA (ENSPPAG00000044082) #12	ENSPPAG00000041743 #13	ENSPPAG00000041660	ENSPPAG00000040272	RAB10 (ENSPPAG00000031403) #14	ENSPPAG00000000073	ENSPPAG00000038147	KIF3C (ENSPPAG00000040221) #15	ASXL2 (ENSPPAG00000040962) #16	DTNB (ENSPPAG00000028095)	DNMT3A (ENSPPAG00000037925) #19	POMC (ENSPPAG00000038015) #20	ENSPPAG00000028041	EFR3B (ENSPPAG00000035349) #21	DNAJC27 (ENSPPAG00000031678) #22	ADCY3 (ENSPPAG00000038289) #24	ENSPPAG00000041965 #25	PTRHD1 (ENSPPAG00000035395) #26	NCOA1 (ENSPPAG00000042202) #27	ENSPPAG00000029973	ENSPPAG00000043336	ITSN2 (ENSPPAG00000032032) #28	FAM228A (ENSPPAG00000025951) #29	FAM228B (ENSPPAG00000022203) #30	PFN4 (ENSPPAG00000038828) #31	TP53I3 (ENSPPAG00000042535) #32	SF3B6 (ENSPPAG00000027816) #33	FKBP1B (ENSPPAG00000035059) #34	WDCP (ENSPPAG00000030779) #35	MFSD2B (ENSPPAG00000028339) #36
Chimpanzee	MODERN SPECIES	14	HADHA (ENSPTRG00000011732) #12	GAREM2 (ENSPTRG00000011731) #13	ENSPTRG00000052059	RAB10 (ENSPTRG00000050373) #14	ENSPTRG00000040383	ENSPTRG00000052062	KIF3C (ENSPTRG00000011727) #15	ENSPTRG00000047905	ASXL2 (ENSPTRG00000011726) #16	DTNB (ENSPTRG00000011724)	DNMT3A (ENSPTRG00000011723) #19	POMC (ENSPTRG00000011721) #20	ENSPTRG00000047695	EFR3B (ENSPTRG00000011720) #21	ARPC3 (ENSPTRG00000005438)	DNAJC27 (ENSPTRG00000011719) #22	ADCY3 (ENSPTRG00000011718) #24	CENPO (ENSPTRG00000011717) #25	PTRHD1 (ENSPTRG00000011716) #26	NCOA1 (ENSPTRG00000011715) #27	ENSPTRG00000046903	ITSN2 (ENSPTRG00000011713) #28	FAM228A (ENSPTRG00000011712) #29	FAM228B (ENSPTRG00000033959) #30	PFN4 (ENSPTRG00000011711) #31	TP53I3 (ENSPTRG00000011710) #32	SF3B6 (ENSPTRG00000011709) #33	FKBP1B (ENSPTRG00000011708) #34	WDCP (ENSPTRG00000011707) #35	MFSD2B (ENSPTRG00000030551) #36	UBXN2A (ENSPTRG00000011705) #37
Human	MODERN SPECIES	11	FAM166C (ENSG00000173557)	OTOF (ENSG00000115155)	DRC1 (ENSG00000157856) #7	SELENOI (ENSG00000138018) #8	ADGRF3 (ENSG00000173567) #9	HADHB (ENSG00000138029) #10	HADHA (ENSG00000084754) #12	GAREM2 (ENSG00000157833) #13	RAB10 (ENSG00000084733) #14	KIF3C (ENSG00000084731) #15	ASXL2 (ENSG00000143970) #16	DTNB (ENSG00000138101)	DNMT3A (ENSG00000119772) #19	POMC (ENSG00000115138) #20	EFR3B (ENSG00000084710) #21	DNAJC27 (ENSG00000115137) #22	ADCY3 (ENSG00000138031) #24	CENPO (ENSG00000138092) #25	PTRHD1 (ENSG00000184924) #26	NCOA1 (ENSG00000084676) #27	ITSN2 (ENSG00000198399) #28	FAM228A (ENSG00000186453) #29	PFN4 (ENSG00000176732) #31	TP53I3 (ENSG00000115129) #32	FAM228B (ENSG00000219626) #30	SF3B6 (ENSG00000115128) #33	FKBP1B (ENSG00000119782) #34	WDCP (ENSG00000163026) #35	MFSD2B (ENSG00000205639) #36	UBXN2A (ENSG00000173960) #37	ATAD2B (ENSG00000119778)
Gorilla	MODERN SPECIES	14	HADHA (ENSGGOG00000004918) #12	GAREM2 (ENSGGOG00000004917) #13	ENSGGOG00000010466	ENSGGOG00000040507	RAB10 (ENSGGOG00000023707) #14	ENSGGOG00000025056	ENSGGOG00000010631	KIF3C (ENSGGOG00000008106) #15	ASXL2 (ENSGGOG00000011013) #16	ENSGGOG00000043565	ENSGGOG00000007679 #18	DNMT3A (ENSGGOG00000012524) #19	POMC (ENSGGOG00000003480) #20	EFR3B (ENSGGOG00000011045) #21	ENSGGOG00000040190	DNAJC27 (ENSGGOG00000004081) #22	ADCY3 (ENSGGOG00000004078) #24	CENPO (ENSGGOG00000038847) #25	PTRHD1 (ENSGGOG00000043870) #26	NCOA1 (ENSGGOG00000011279) #27	ITSN2 (ENSGGOG00000007583) #28	ENSGGOG00000043669	ENSGGOG00000042882 #29	FAM228B (ENSGGOG00000014641) #30	PFN4 (ENSGGOG00000028452) #31	TP53I3 (ENSGGOG00000040915) #32	SF3B6 (ENSGGOG00000040806) #33	FKBP1B (ENSGGOG00000044101) #34	WDCP (ENSGGOG00000015146) #35	MFSD2B (ENSGGOG00000007752) #36	ENSGGOG00000036282
Orangutan	MODERN SPECIES	14	SELENOI (ENSPPYG00000032296) #8	ADGRF3 (ENSPPYG00000012581) #9	HADHB (ENSPPYG00000012582) #10	HADHA (ENSPPYG00000012583) #12	GAREM2 (ENSPPYG00000034864) #13	ENSPPYG00000040422	RAB10 (ENSPPYG00000012586) #14	ENSPPYG00000012587	KIF3C (ENSPPYG00000012588) #15	ASXL2 (ENSPPYG00000012589) #16	DTNB (ENSPPYG00000012590)	DNMT3A (ENSPPYG00000012591) #19	POMC (ENSPPYG00000012592) #20	ENSPPYG00000038894	EFR3B (ENSPPYG00000012593) #21	DNAJC27 (ENSPPYG00000030855) #22	ADCY3 (ENSPPYG00000012595) #24	CENPO (ENSPPYG00000034751) #25	PTRHD1 (ENSPPYG00000036929) #26	NCOA1 (ENSPPYG00000012598) #27	ITSN2 (ENSPPYG00000012599) #28	FAM228A (ENSPPYG00000032298) #29	FAM228B (ENSPPYG00000033906) #30	ENSPPYG00000035829 #31	ENSPPYG00000041124	TP53I3 (ENSPPYG00000012602) #32	SF3B6 (ENSPPYG00000036931) #33	FKBP1B (ENSPPYG00000012604) #34	WDCP (ENSPPYG00000012605) #35	MFSD2B (ENSPPYG00000012606) #36	UBXN2A (ENSPPYG00000012607) #37
Gibbon	MODERN SPECIES	9	ENSNLEG00000001616 #12	GAREM2 (ENSNLEG00000001585) #13	ENSNLEG00000032970	ENSNLEG00000033019	RAB10 (ENSNLEG00000001528) #14	ENSNLEG00000030085	KIF3C (ENSNLEG00000001471) #15	ENSNLEG00000027472	ENSNLEG00000035558 #17	ASXL2 (ENSNLEG00000028738) #16	ENSNLEG00000001170 #18	DNMT3A (ENSNLEG00000026822) #19	POMC (ENSNLEG00000001153) #20	EFR3B (ENSNLEG00000001119) #21	ENSNLEG00000034960	DNAJC27 (ENSNLEG00000001103) #22	ADCY3 (ENSNLEG00000001020) #24	CENPO (ENSNLEG00000000994) #25	PTRHD1 (ENSNLEG00000000990) #26	NCOA1 (ENSNLEG00000000895) #27	ITSN2 (ENSNLEG00000000860) #28	FAM228A (ENSNLEG00000000888) #29	FAM228B (ENSNLEG00000000856) #30	PFN4 (ENSNLEG00000000848) #31	TP53I3 (ENSNLEG00000000833) #32	ENSNLEG00000000815 #33	FKBP1B (ENSNLEG00000000800) #34	WDCP (ENSNLEG00000000787) #35	MFSD2B (ENSNLEG00000000769) #36	UBXN2A (ENSNLEG00000000751) #37	ENSNLEG00000033640
Platyrrhini	ANCESTRAL SPECIES	45						ENSGT01030000234626.A.b.o.a ##10	ENSGT00940000154677.g.a #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Cebidae	ANCESTRAL SPECIES	40					ENSGT01030000234626.A.b.o.a ##10	ENSGT00940000154677.g.a.c #12	ENSGT00940000154677.g.a.d #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Cebidae_a	ANCESTRAL SPECIES	46					ENSGT01030000234626.A.b.o.a ##10	ENSGT00940000154677.g.a.c #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00950000183098.b.a.b.ib.a.a.a.a.a	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00950000182926.b.d.c.a.g.a
Bolivian squirrel monkey	MODERN SPECIES	113		ENSSBOG00000024755 ##10	ENSSBOG00000032851 #12	GAREM2 (ENSSBOG00000020309) #13	RAB10 (ENSSBOG00000034188) #14	ENSSBOG00000023403	KIF3C (ENSSBOG00000025038) #15	ENSSBOG00000031056	ENSSBOG00000026562	ASXL2 (ENSSBOG00000001902) #16	ENSSBOG00000022145	ENSSBOG00000023696 #18	DNMT3A (ENSSBOG00000027618) #19	POMC (ENSSBOG00000030918) #20	EFR3B (ENSSBOG00000026571) #21	DNAJC27 (ENSSBOG00000021759) #22	ADCY3 (ENSSBOG00000022082) #24	ENSSBOG00000007440	CENPO (ENSSBOG00000023221) #25	PTRHD1 (ENSSBOG00000031751) #26	NCOA1 (ENSSBOG00000030979) #27	ITSN2 (ENSSBOG00000034128) #28	FAM228B (ENSSBOG00000021849) #30	PFN4 (ENSSBOG00000030872) #31	ENSSBOG00000029308 #32	TP53I3 (ENSSBOG00000036061) #32	SF3B6 (ENSSBOG00000002914) #33	FKBP1B (ENSSBOG00000020385) #34	ENSSBOG00000029165 #35	MFSD2B (ENSSBOG00000022320) #36	UBXN2A (ENSSBOG00000023884) #37
Capuchin	MODERN SPECIES	1	GAREM2 (ENSCCAG00000037792) #13	RAB10 (ENSCCAG00000031920) #14	ENSCCAG00000027276	KIF3C (ENSCCAG00000035056) #15	ENSCCAG00000024370	ENSCCAG00000029919	ENSCCAG00000037788	ENSCCAG00000036729	ENSCCAG00000033575 ##17	ASXL2 (ENSCCAG00000028549) #16	ENSCCAG00000035816 #18	DNMT3A (ENSCCAG00000037628) #19	POMC (ENSCCAG00000030547) #20	EFR3B (ENSCCAG00000022207) #21	ENSCCAG00000025067	DNAJC27 (ENSCCAG00000021410) #22	ADCY3 (ENSCCAG00000021802) #24	CENPO (ENSCCAG00000026815) #25	PTRHD1 (ENSCCAG00000033856) #26	NCOA1 (ENSCCAG00000023754) #27	ITSN2 (ENSCCAG00000006141) #28	FAM228A (ENSCCAG00000029149) #29	FAM228B (ENSCCAG00000033095) #30	PFN4 (ENSCCAG00000028499) #31	TP53I3 (ENSCCAG00000032310) #32	SF3B6 (ENSCCAG00000036653) #33	FKBP1B (ENSCCAG00000003872) #34	WDCP (ENSCCAG00000035342) #35	MFSD2B (ENSCCAG00000026318) #36	UBXN2A (ENSCCAG00000025921) #37	ENSCCAG00000021209
Marmoset	MODERN SPECIES	5	RAB10 (ENSCJAG00000056072) #14	ENSCJAG00000070963	GAREM2 (ENSCJAG00000008091) #13	HADHA (ENSCJAG00000008008) #12	ENSCJAG00000007943 ##10	ENSCJAG00000078565	ENSCJAG00000072220	ASXL2 (ENSCJAG00000008396) #16	ENSCJAG00000008281 #18	ENSCJAG00000084719	DNMT3A (ENSCJAG00000008172) #19	POMC (ENSCJAG00000045765) #20	EFR3B (ENSCJAG00000008127) #21	ENSCJAG00000047462	ENSCJAG00000073498	DNAJC27 (ENSCJAG00000008094) #22	ADCY3 (ENSCJAG00000008027) #24	ENSCJAG00000085793	CENPO (ENSCJAG00000008019) #25	PTRHD1 (ENSCJAG00000008012) #26	NCOA1 (ENSCJAG00000007912) #27	ENSCJAG00000007772 #28	FAM228A (ENSCJAG00000007770) #29	ENSCJAG00000007757 #30	PFN4 (ENSCJAG00000007745) #31	TP53I3 (ENSCJAG00000007734) #32	SF3B6 (ENSCJAG00000007716) #33	ENSCJAG00000083698 #34	WDCP (ENSCJAG00000007696) #35	MFSD2B (ENSCJAG00000007691) #36	UBXN2A (ENSCJAG00000007665) #37
Mas night monkey	MODERN SPECIES	950					ENSANAG00000029183	ENSANAG00000024346	ENSANAG00000020119	ENSANAG00000034073	ENSANAG00000024809	ASXL2 (ENSANAG00000030148) #16	ENSANAG00000017069	ENSANAG00000031314 #18	ENSANAG00000034513 #19	POMC (ENSANAG00000026950) #20	EFR3B (ENSANAG00000035541) #21	DNAJC27 (ENSANAG00000032274) #22	ADCY3 (ENSANAG00000019567) #24	CENPO (ENSANAG00000035020) #25	ENSANAG00000022269	PTRHD1 (ENSANAG00000019089) #26	NCOA1 (ENSANAG00000022765) #27	ENSANAG00000036768	ITSN2 (ENSANAG00000034091) #28	FAM228B (ENSANAG00000021433) #30	PFN4 (ENSANAG00000034252) #31	TP53I3 (ENSANAG00000032220) #32	SF3B6 (ENSANAG00000027284) #33	FKBP1B (ENSANAG00000028933) #34	WDCP (ENSANAG00000025318) #35	MFSD2B (ENSANAG00000035631) #36	UBXN2A (ENSANAG00000031177) #37
Tarsier	MODERN SPECIES	4831														DNMT3A (ENSTSYG00000010643) #19	EFR3B (ENSTSYG00000002047) #21	DNAJC27 (ENSTSYG00000014096) #22	ADCY3 (ENSTSYG00000010032) #24	CENPO (ENSTSYG00000010012) #25	PTRHD1 (ENSTSYG00000009995) #26	NCOA1 (ENSTSYG00000010360) #27	ITSN2 (ENSTSYG00000009250) #28	FAM228A (ENSTSYG00000000799) #29	FAM228B (ENSTSYG00000000827) #30	PFN4 (ENSTSYG00000005750) #31	TP53I3 (ENSTSYG00000007873) #32	SF3B6 (ENSTSYG00000013978) #33	FKBP1B (ENSTSYG00000036995) #34	WDCP (ENSTSYG00000009577) #35	UBXN2A (ENSTSYG00000025668) #37
Strepsirrhini	ANCESTRAL SPECIES	13	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Lemuriformes	ANCESTRAL SPECIES	23	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Mouse lemur	MODERN SPECIES	30	FAM166C (ENSMICG00000044017)	OTOF (ENSMICG00000006807)	DRC1 (ENSMICG00000006785) #7	SELENOI (ENSMICG00000006775) #8	ADGRF3 (ENSMICG00000006761) #9	HADHB (ENSMICG00000006750) #10	HADHA (ENSMICG00000014248) #12	GAREM2 (ENSMICG00000014228) #13	ENSMICG00000037941 #14	KIF3C (ENSMICG00000029603) #15	ASXL2 (ENSMICG00000038141) #16	ENSMICG00000001238 #18	ENSMICG00000004108 #19	POMC (ENSMICG00000001616) #20	EFR3B (ENSMICG00000001606) #21	DNAJC27 (ENSMICG00000027424) #22	ADCY3 (ENSMICG00000001584) #24	CENPO (ENSMICG00000001580) #25	PTRHD1 (ENSMICG00000001578) #26	NCOA1 (ENSMICG00000037585) #27	ITSN2 (ENSMICG00000001552) #28	FAM228A (ENSMICG00000001546) #29	FAM228B (ENSMICG00000032483) #30	PFN4 (ENSMICG00000001541) #31	TP53I3 (ENSMICG00000001537) #32	SF3B6 (ENSMICG00000032874) #33	FKBP1B (ENSMICG00000028839) #34	WDCP (ENSMICG00000001526) #35	MFSD2B (ENSMICG00000027625) #36	ENSMICG00000001508 #37	ENSMICG00000043253
Lemuriformes_a	ANCESTRAL SPECIES	10	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00940000172407	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Greater bamboo lemur	MODERN SPECIES	4	DRC1 (ENSPSMG00000004646) #7	SELENOI (ENSPSMG00000004662) #8	ENSPSMG00000004670	ADGRF3 (ENSPSMG00000004677) #9	HADHB (ENSPSMG00000004850) #10	HADHA (ENSPSMG00000005094) #12	GAREM2 (ENSPSMG00000005141) #13	RAB10 (ENSPSMG00000005159) #14	KIF3C (ENSPSMG00000005196) #15	ENSPSMG00000005229	ASXL2 (ENSPSMG00000005276) #16	DTNB (ENSPSMG00000005314)	DNMT3A (ENSPSMG00000005403) #19	POMC (ENSPSMG00000005433) #20	EFR3B (ENSPSMG00000005442) #21	DNAJC27 (ENSPSMG00000005456) #22	ADCY3 (ENSPSMG00000005496) #24	CENPO (ENSPSMG00000005515) #25	PTRHD1 (ENSPSMG00000005516) #26	NCOA1 (ENSPSMG00000005577) #27	ENSPSMG00000005684	ENSPSMG00000005687	ENSPSMG00000005701 #28
Coquerels sifaka	MODERN SPECIES	534	DRC1 (ENSPCOG00000014033) #7	ENSPCOG00000017322 #8	ADGRF3 (ENSPCOG00000019825) #9	HADHB (ENSPCOG00000013733) #10	HADHA (ENSPCOG00000021407) #12	GAREM2 (ENSPCOG00000017304) #13	RAB10 (ENSPCOG00000026753) #14	KIF3C (ENSPCOG00000026164) #15	ENSPCOG00000016865	ENSPCOG00000007714	ASXL2 (ENSPCOG00000027270) #16	ENSPCOG00000013999 #18	DNMT3A (ENSPCOG00000025150) #19	POMC (ENSPCOG00000028772) #20	EFR3B (ENSPCOG00000014434) #21	DNAJC27 (ENSPCOG00000025665) #22	ADCY3 (ENSPCOG00000020363) #24	CENPO (ENSPCOG00000006257) #25	PTRHD1 (ENSPCOG00000003110) #26	NCOA1 (ENSPCOG00000020541) #27	ITSN2 (ENSPCOG00000022978) #28	FAM228A (ENSPCOG00000002187) #29	FAM228B (ENSPCOG00000009235) #30	PFN4 (ENSPCOG00000015971) #31	SF3B6 (ENSPCOG00000020350) #33
Bushbaby	MODERN SPECIES	137	OTOF (ENSOGAG00000006798)	DRC1 (ENSOGAG00000005456) #7	SELENOI (ENSOGAG00000005453) #8	ADGRF3 (ENSOGAG00000005448) #9	ENSOGAG00000005444 #10	ENSOGAG00000005440 #12	ENSOGAG00000030869 #13	ENSOGAG00000027816	RAB10 (ENSOGAG00000010403) #14	KIF3C (ENSOGAG00000026662) #15	ASXL2 (ENSOGAG00000002435) #16	ENSOGAG00000007002 #18	DNMT3A (ENSOGAG00000015182) #19	POMC (ENSOGAG00000028112) #20	EFR3B (ENSOGAG00000015170) #21	DNAJC27 (ENSOGAG00000015168) #22	ENSOGAG00000027580	ADCY3 (ENSOGAG00000000758) #24	PTRHD1 (ENSOGAG00000000756) #26	NCOA1 (ENSOGAG00000000754) #27	ENSOGAG00000034550	ITSN2 (ENSOGAG00000002146) #28	ENSOGAG00000028998 #29	PFN4 (ENSOGAG00000004473) #31	ENSOGAG00000030458 #32	TP53I3 (ENSOGAG00000004470) #32	SF3B6 (ENSOGAG00000004468) #33	FKBP1B (ENSOGAG00000029092) #34	WDCP (ENSOGAG00000002596) #35	MFSD2B (ENSOGAG00000002595) #36	UBXN2A (ENSOGAG00000000025) #37
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Tree shrew	MODERN SPECIES	595																DNAJC27 (ENSTBEG00000005463) #22
Glires	ANCESTRAL SPECIES	13	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37
Lagomorpha	ANCESTRAL SPECIES	75												ENSGT00940000164272	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.h.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Pika	MODERN SPECIES	5033														POMC (ENSOPRG00000008699) #20	EFR3B (ENSOPRG00000008663) #21	DNAJC27 (ENSOPRG00000008650) #22	ADCY3 (ENSOPRG00000008617) #24	CENPO (ENSOPRG00000008606) #25	PTRHD1 (ENSOPRG00000008600) #26	NCOA1 (ENSOPRG00000008579) #27
Rabbit	MODERN SPECIES	11												DNMT3A (ENSOCUG00000024688) #19	ENSOCUG00000006025 #20	ENSOCUG00000032692 #20	EFR3B (ENSOCUG00000021395) #21	DNAJC27 (ENSOCUG00000011260) #22	ADCY3 (ENSOCUG00000015443) #24	CENPO (ENSOCUG00000015435) #25	PTRHD1 (ENSOCUG00000015432) #26	NCOA1 (ENSOCUG00000015422) #27	ITSN2 (ENSOCUG00000023433) #28	ENSOCUG00000015258 #29	FAM228B (ENSOCUG00000023977) #30	ENSOCUG00000015250 #31	TP53I3 (ENSOCUG00000011212) #32	SF3B6 (ENSOCUG00000022008) #33	FKBP1B (ENSOCUG00000037720) #34	WDCP (ENSOCUG00000012562) #35	ENSOCUG00000008793 #36	UBXN2A (ENSOCUG00000008783) #37	ATAD2B (ENSOCUG00000005723)
Rodentia	ANCESTRAL SPECIES	15	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Myomorpha	ANCESTRAL SPECIES	24	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Muroidea	ANCESTRAL SPECIES	21	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Muroidea_A	ANCESTRAL SPECIES	24	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00700000106164	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Cricetidae	ANCESTRAL SPECIES	24	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00700000106164	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Cricetinae	ANCESTRAL SPECIES		ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Golden Hamster	MODERN SPECIES	705									Rab10 (ENSMAUG00000000087) #14	Kif3c (ENSMAUG00000016707) #15	Asxl2 (ENSMAUG00000017967) #16	Dtnb (ENSMAUG00000013638) #18	Dnmt3a (ENSMAUG00000012211) #19	Pomc (ENSMAUG00000007673) #20	Efr3b (ENSMAUG00000000436) #21	Dnajc27 (ENSMAUG00000000099) #22	Adcy3 (ENSMAUG00000019311) #24	ENSMAUG00000017198 #25	Ptrhd1 (ENSMAUG00000019251) #26	Ncoa1 (ENSMAUG00000016768) #27	Itsn2 (ENSMAUG00000015636) #28	Fam228a (ENSMAUG00000019010) #29	Fam228b (ENSMAUG00000017259) #30	ENSMAUG00000004078 #32	ENSMAUG00000000586 #33	Fkbp1b (ENSMAUG00000016519) #34	Wdcp (ENSMAUG00000013564) #35	Ubxn2a (ENSMAUG00000013894) #37	ENSMAUG00000016676	Klhl29 (ENSMAUG00000015607)	Apob (ENSMAUG00000010835)
Chinese hamster chok1gshd	MODERN SPECIES	229	Fam166c (ENSCGRG00001025030)	Otof (ENSCGRG00001015298)	Drc1 (ENSCGRG00001017306) #7	Selenoi (ENSCGRG00001008322) #8	Adgrf3 (ENSCGRG00001006414) #9	Hadhb (ENSCGRG00001015973) #10	Hadha (ENSCGRG00001020547) #12	Garem2 (ENSCGRG00001015014) #13	Rab10 (ENSCGRG00001018289) #14	Kif3c (ENSCGRG00001019464) #15	Asxl2 (ENSCGRG00001024434) #16	Dtnb (ENSCGRG00001024414) #18	Dnmt3a (ENSCGRG00001020172) #19	Pomc (ENSCGRG00001023516) #20	Efr3b (ENSCGRG00001024941) #21	Dnajc27 (ENSCGRG00001023794) #22	Adcy3 (ENSCGRG00001010489) #24	ENSCGRG00001025010 #25	Ptrhd1 (ENSCGRG00001003289) #26	Ncoa1 (ENSCGRG00001009336) #27	Itsn2 (ENSCGRG00001014840) #28	Fam228b (ENSCGRG00001002148) #30	Pfn4 (ENSCGRG00001013229) #31	ENSCGRG00001011738 #32	Sf3b6 (ENSCGRG00001014595) #33	Fkbp1b (ENSCGRG00001018564) #34	Wdcp (ENSCGRG00001019012) #35	Mfsd2b (ENSCGRG00001024664) #36	Ubxn2a (ENSCGRG00001007449) #37	Atad2b (ENSCGRG00001016996)	ENSCGRG00001012412
Cricetidae_B	ANCESTRAL SPECIES	43					ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00700000106164	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Prairie vole	MODERN SPECIES	353	Klhl7 (ENSMOCG00000014969)	Hycc1 (ENSMOCG00000012168)	Il6 (ENSMOCG00000008857)	ENSMOCG00000015399	Hadha (ENSMOCG00000019513) #12	Garem2 (ENSMOCG00000003375) #13	ENSMOCG00000013952	Rab10 (ENSMOCG00000020028) #14	Kif3c (ENSMOCG00000000499) #15	Asxl2 (ENSMOCG00000003954) #16	ENSMOCG00000001748	Dtnb (ENSMOCG00000015987) #18	ENSMOCG00000020449 #19	Pomc (ENSMOCG00000010293) #20	Efr3b (ENSMOCG00000017910) #21	Dnajc27 (ENSMOCG00000015357) #22	Adcy3 (ENSMOCG00000000285) #24	ENSMOCG00000004487 #25	Ptrhd1 (ENSMOCG00000001204) #26	Ncoa1 (ENSMOCG00000015188) #27	Itsn2 (ENSMOCG00000008139) #28	Fam228a (ENSMOCG00000003050) #29	Fam228b (ENSMOCG00000006563) #30	Pfn4 (ENSMOCG00000000562) #31	ENSMOCG00000010032 #32	Sf3b6 (ENSMOCG00000014338) #33	Ppm1k (ENSMOCG00000000893)	Herc6 (ENSMOCG00000013584)	ENSMOCG00000010888	Lancl2 (ENSMOCG00000013176)	Vopp1 (ENSMOCG00000017000)
Northern American deer mouse	MODERN SPECIES	14	Gtf3c2 (ENSPEMG00000019012)	Eif2b4 (ENSPEMG00000012796)	Snx17 (ENSPEMG00000004178)	Zfp513 (ENSPEMG00000012846)	Ppm1g (ENSPEMG00000015901)	Nrbp1 (ENSPEMG00000019279)	Krtcap3 (ENSPEMG00000012386)	Ift172 (ENSPEMG00000018644)	Fndc4 (ENSPEMG00000005558)	Gckr (ENSPEMG00000018937)	Asxl2 (ENSPEMG00000010887) #16	Dtnb (ENSPEMG00000016919) #18	ENSPEMG00000006987 #19	Pomc (ENSPEMG00000010396) #20	Efr3b (ENSPEMG00000012091) #21	Dnajc27 (ENSPEMG00000025645) #22	Adcy3 (ENSPEMG00000017132) #24	Cenpo (ENSPEMG00000006819) #25	Ptrhd1 (ENSPEMG00000025749) #26	Ncoa1 (ENSPEMG00000011532) #27	Itsn2 (ENSPEMG00000004846) #28	ENSPEMG00000026255 #29	Fam228b (ENSPEMG00000007380) #30	Pfn4 (ENSPEMG00000029613) #31	ENSPEMG00000009026 #32	Sf3b6 (ENSPEMG00000010308) #33	Fkbp1b (ENSPEMG00000028047) #34	Wdcp (ENSPEMG00000011326) #35	Mfsd2b (ENSPEMG00000014144) #36	ENSPEMG00000017582 #37	Atad2b (ENSPEMG00000010515)
Murinae	ANCESTRAL SPECIES	8	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00700000106164	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b	ENSGT00940000158824
Mus	ANCESTRAL SPECIES	10	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00700000106164	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b	ENSGT00940000158824
Mus_A	ANCESTRAL SPECIES	17									ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b	ENSGT00940000158824
Mus_B	ANCESTRAL SPECIES	17									ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b	ENSGT00940000158824
Mus_C	ANCESTRAL SPECIES	11								ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000164272	ENSGT00940000153897.b.a.a.b ##18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b	ENSGT00940000158824
Steppe mouse	MODERN SPECIES	25						ENSMSIG00000029152	Rab10 (ENSMSIG00000029153) #14	Kif3c (ENSMSIG00000029156) #15	Asxl2 (ENSMSIG00000029159) #16	ENSMSIG00000029176	ENSMSIG00000029185 ##18	Dnmt3a (ENSMSIG00000029189) #19	ENSMSIG00000029199	Pomc (ENSMSIG00000029200) #20	Efr3b (ENSMSIG00000029204) #21	Dnajc27 (ENSMSIG00000029205) #22	Adcy3 (ENSMSIG00000029208) #24	Cenpo (ENSMSIG00000029237) #25	Ptrhd1 (ENSMSIG00000029244) #26	ENSMSIG00000029247	Ncoa1 (ENSMSIG00000029252) #27	ENSMSIG00000029294	Itsn2 (ENSMSIG00000029297) #28	Fam228a (ENSMSIG00000000009) #29	ENSMSIG00000000024 #30
spretus	MODERN SPECIES	3									Rab10 (MGP_SPRETEiJ_G0018415) #14	Kif3c (MGP_SPRETEiJ_G0018416) #15	Asxl2 (MGP_SPRETEiJ_G0018417) #16	Dtnb (MGP_SPRETEiJ_G0018418) #18	MGP_SPRETEiJ_G0018420	Pomc (MGP_SPRETEiJ_G0018421) #20	Efr3b (MGP_SPRETEiJ_G0018422) #21	Dnajc27 (MGP_SPRETEiJ_G0018423) #22	Adcy3 (MGP_SPRETEiJ_G0018424) #24	Cenpo (MGP_SPRETEiJ_G0018425) #25	Ptrhd1 (MGP_SPRETEiJ_G0018426) #26	Ncoa1 (MGP_SPRETEiJ_G0018427) #27	MGP_SPRETEiJ_G0018428	Itsn2 (MGP_SPRETEiJ_G0018429) #28	MGP_SPRETEiJ_G0018430	Fam228a (MGP_SPRETEiJ_G0018431) #29	Fam228b (MGP_SPRETEiJ_G0018432) #30	Pfn4 (MGP_SPRETEiJ_G0018433) #31	Sf3b6 (MGP_SPRETEiJ_G0018434) #33	Fkbp1b (MGP_SPRETEiJ_G0018435) #34	Wdcp (MGP_SPRETEiJ_G0018436) #35	Mfsd2b (MGP_SPRETEiJ_G0018437) #36	Ubxn2a (MGP_SPRETEiJ_G0018438) #37
Mouse	MODERN SPECIES	3									Rab10 (ENSMUSG00000020671) #14	Kif3c (ENSMUSG00000020668) #15	Asxl2 (ENSMUSG00000037486) #16	Dtnb (ENSMUSG00000071454) #18	Dnmt3a (ENSMUSG00000020661) #19	Pomc (ENSMUSG00000020660) #20	Efr3b (ENSMUSG00000020658) #21	Dnajc27 (ENSMUSG00000020657) #22	Adcy3 (ENSMUSG00000020654) #24	Cenpo (ENSMUSG00000020652) #25	Ptrhd1 (ENSMUSG00000096199) #26	Ncoa1 (ENSMUSG00000020647) #27	Itsn2 (ENSMUSG00000020640) #28	Fam228a (ENSMUSG00000079177) #29	Fam228b (ENSMUSG00000050545) #30	Pfn4 (ENSMUSG00000020639) #31	Sf3b6 (ENSMUSG00000037361) #33	Fkbp1b (ENSMUSG00000020635) #34	Wdcp (ENSMUSG00000051721) #35	Mfsd2b (ENSMUSG00000037336) #36	Ubxn2a (ENSMUSG00000020634) #37	Atad2b (ENSMUSG00000052812)	Klhl29 (ENSMUSG00000020627)
Ryukyu mouse	MODERN SPECIES	3								Rab10 (MGP_CAROLIEiJ_G0017571) #14	Kif3c (MGP_CAROLIEiJ_G0017572) #15	Asxl2 (MGP_CAROLIEiJ_G0017573) #16	Dtnb (MGP_CAROLIEiJ_G0017574) #18	Dnmt3a (MGP_CAROLIEiJ_G0017575) #19	MGP_CAROLIEiJ_G0017576	Pomc (MGP_CAROLIEiJ_G0017577) #20	Efr3b (MGP_CAROLIEiJ_G0017578) #21	Dnajc27 (MGP_CAROLIEiJ_G0017579) #22	Adcy3 (MGP_CAROLIEiJ_G0017580) #24	Cenpo (MGP_CAROLIEiJ_G0017581) #25	Ptrhd1 (MGP_CAROLIEiJ_G0017582) #26	Ncoa1 (MGP_CAROLIEiJ_G0017583) #27	MGP_CAROLIEiJ_G0017584	MGP_CAROLIEiJ_G0017585 #28	MGP_CAROLIEiJ_G0017586	Fam228a (MGP_CAROLIEiJ_G0017587) #29	Fam228b (MGP_CAROLIEiJ_G0017588) #30	Pfn4 (MGP_CAROLIEiJ_G0017589) #31	Sf3b6 (MGP_CAROLIEiJ_G0017590) #33	Fkbp1b (MGP_CAROLIEiJ_G0017591) #34	Wdcp (MGP_CAROLIEiJ_G0017592) #35	Mfsd2b (MGP_CAROLIEiJ_G0017593) #36	MGP_CAROLIEiJ_G0017594 #37
Shrew mouse	MODERN SPECIES	20	Fam166c (MGP_PahariEiJ_G0029323)	Otof (MGP_PahariEiJ_G0029324)	Drc1 (MGP_PahariEiJ_G0029325) #7	MGP_PahariEiJ_G0029326 #8	Adgrf3 (MGP_PahariEiJ_G0029327) #9	Hadhb (MGP_PahariEiJ_G0029328) #10	Hadha (MGP_PahariEiJ_G0029329) #12	Garem2 (MGP_PahariEiJ_G0029330) #13	MGP_PahariEiJ_G0029331	Rab10 (MGP_PahariEiJ_G0029332) #14	Kif3c (MGP_PahariEiJ_G0029333) #15	MGP_PahariEiJ_G0029335 #18	Dnmt3a (MGP_PahariEiJ_G0029336) #19	Pomc (MGP_PahariEiJ_G0029337) #20	Efr3b (MGP_PahariEiJ_G0029338) #21	MGP_PahariEiJ_G0029339 #22	MGP_PahariEiJ_G0029340 #24	MGP_PahariEiJ_G0029341 #25	Ncoa1 (MGP_PahariEiJ_G0029342) #27	MGP_PahariEiJ_G0029343	Itsn2 (MGP_PahariEiJ_G0029344) #28	Fam228a (MGP_PahariEiJ_G0029345) #29	Fam228b (MGP_PahariEiJ_G0029346) #30	Pfn4 (MGP_PahariEiJ_G0029347) #31	Sf3b6 (MGP_PahariEiJ_G0029348) #33	Fkbp1b (MGP_PahariEiJ_G0029349) #34	Wdcp (MGP_PahariEiJ_G0029350) #35	Mfsd2b (MGP_PahariEiJ_G0029351) #36	Ubxn2a (MGP_PahariEiJ_G0029352) #37	Atad2b (MGP_PahariEiJ_G0029353)	Klhl29 (MGP_PahariEiJ_G0029354)
Rat	MODERN SPECIES	16	Selenoi (ENSRNOG00000059295) #8	Adgrf3 (ENSRNOG00000024766) #9	Hadhb (ENSRNOG00000010800) #10	Hadha (ENSRNOG00000024629) #12	Garem2 (ENSRNOG00000048004) #13	3110082J24Rik (ENSRNOG00000046262)	ENSRNOG00000069124	Rab10 (ENSRNOG00000047088) #14	Kif3c (ENSRNOG00000011394) #15	Asxl2 (ENSRNOG00000011908) #16	ENSRNOG00000066562 #16	Dtnb (ENSRNOG00000011914) #18	Dnmt3a (ENSRNOG00000026649) #19	Pomc (ENSRNOG00000012686) #20	Efr3b (ENSRNOG00000012950) #21	Dnajc27 (ENSRNOG00000003988) #22	LOC120103497 (ENSRNOG00000052193)	Adcy3 (ENSRNOG00000003999) #24	Cenpo (ENSRNOG00000050111) #25	Ptrhd1 (ENSRNOG00000004059) #26	Ncoa1 (ENSRNOG00000004068) #27	Itsn2 (ENSRNOG00000046741) #28	AABR07052130.1 (ENSRNOG00000008501)	Fam228a (ENSRNOG00000050114) #29	Fam228b (ENSRNOG00000049615) #30	Pfn4 (ENSRNOG00000050386) #31	Sf3b6 (ENSRNOG00000046172) #33	Fkbp1b (ENSRNOG00000047143) #34	Wdcp (ENSRNOG00000049989) #35	Mfsd2b (ENSRNOG00000023508) #36	Ubxn2a (ENSRNOG00000068687) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	483												Dtnb (ENSNGAG00000020485) #18	Dnmt3a (ENSNGAG00000004262) #19	Pomc (ENSNGAG00000010537) #20	Efr3b (ENSNGAG00000011152) #21	Dnajc27 (ENSNGAG00000012893) #22	ENSNGAG00000013779	Adcy3 (ENSNGAG00000015054) #24	Cenpo (ENSNGAG00000016001) #25	Ptrhd1 (ENSNGAG00000016335) #26	Ncoa1 (ENSNGAG00000017395) #27	ENSNGAG00000018521 #28	Fam228b (ENSNGAG00000019384) #30	Pfn4 (ENSNGAG00000019845) #31	ENSNGAG00000020092 #32	Sf3b6 (ENSNGAG00000020256) #33	Fkbp1b (ENSNGAG00000020466) #34	Wdcp (ENSNGAG00000017144) #35	Mfsd2b (ENSNGAG00000020776) #36	Ubxn2a (ENSNGAG00000000588) #37	Atad2b (ENSNGAG00000003640)
Lesser Egyptian jerboa	MODERN SPECIES	106	ENSJJAG00000016201 #9	Hadhb (ENSJJAG00000016783) #10	Hadha (ENSJJAG00000017662) #12	Garem2 (ENSJJAG00000017758) #13	ENSJJAG00000018461 #14	Kif3c (ENSJJAG00000018278) #15	ENSJJAG00000013909	Asxl2 (ENSJJAG00000020150) #16	ENSJJAG00000013951	Dtnb (ENSJJAG00000014850) #18	ENSJJAG00000016173	Dnmt3a (ENSJJAG00000002007) #19	Pomc (ENSJJAG00000003230) #20	Efr3b (ENSJJAG00000014981) #21	ENSJJAG00000016036	Dnajc27 (ENSJJAG00000016683) #22	Adcy3 (ENSJJAG00000018411) #24	Cenpo (ENSJJAG00000019283) #25	Ptrhd1 (ENSJJAG00000024180) #26	Ncoa1 (ENSJJAG00000000608) #27	ENSJJAG00000010182	ENSJJAG00000010587	Itsn2 (ENSJJAG00000014766) #28	Fam228a (ENSJJAG00000018793) #29	ENSJJAG00000018974	Fam228b (ENSJJAG00000019232) #30	Pfn4 (ENSJJAG00000019663) #31	Sf3b6 (ENSJJAG00000021819) #33	ENSJJAG00000022421 #34	Wdcp (ENSJJAG00000022685) #35	Mfsd2b (ENSJJAG00000023300) #36
Kangaroo rat	MODERN SPECIES	339	Otof (ENSDORG00000013123)	Drc1 (ENSDORG00000013116) #7	Selenoi (ENSDORG00000013109) #8	Adgrf3 (ENSDORG00000008293) #9	ENSDORG00000008292 #10	Hadha (ENSDORG00000015032) #12	Garem2 (ENSDORG00000015031) #13	Rab10 (ENSDORG00000023416) #14	Kif3c (ENSDORG00000003700) #15	Asxl2 (ENSDORG00000013989) #16	Dtnb (ENSDORG00000005817) #18	Dnmt3a (ENSDORG00000010021) #19	Pomc (ENSDORG00000005577) #20	Efr3b (ENSDORG00000005575) #21	ENSDORG00000029715	Dnajc27 (ENSDORG00000015134) #22	Adcy3 (ENSDORG00000007778) #24	Cenpo (ENSDORG00000013630) #25	Ptrhd1 (ENSDORG00000026776) #26	Ncoa1 (ENSDORG00000001089) #27	Itsn2 (ENSDORG00000004645) #28	Fam228b (ENSDORG00000028363) #30	Pfn4 (ENSDORG00000013388) #31	ENSDORG00000009773 #32	ENSDORG00000009772 #33	Fkbp1b (ENSDORG00000025103) #34	Wdcp (ENSDORG00000009768) #35	Mfsd2b (ENSDORG00000015943) #36	Ubxn2a (ENSDORG00000025740) #37	ENSDORG00000027743	Klhl29 (ENSDORG00000012917)
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.h.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b	ENSGT00940000158824
Hystricomorpha_a	ANCESTRAL SPECIES	31	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b	ENSGT00940000158824
Hystricomorpha_b	ANCESTRAL SPECIES	26	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT01000000214622	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b	ENSGT00940000158824
Long-tailed chinchilla	MODERN SPECIES	176	OTOF (ENSCLAG00000009174)	DRC1 (ENSCLAG00000016214) #7	SELENOI (ENSCLAG00000014310) #8	ENSCLAG00000011221 #9	HADHB (ENSCLAG00000010359) #10	HADHA (ENSCLAG00000009530) #12	GAREM2 (ENSCLAG00000013430) #13	RAB10 (ENSCLAG00000010979) #14	KIF3C (ENSCLAG00000015470) #15	ASXL2 (ENSCLAG00000011428) #16	ENSCLAG00000009921	ENSCLAG00000008767 #18	DNMT3A (ENSCLAG00000011272) #19	POMC (ENSCLAG00000010165) #20	EFR3B (ENSCLAG00000005527) #21	DNAJC27 (ENSCLAG00000008212) #22	ADCY3 (ENSCLAG00000013780) #24	CENPO (ENSCLAG00000007716) #25	PTRHD1 (ENSCLAG00000006505) #26	NCOA1 (ENSCLAG00000012434) #27	ITSN2 (ENSCLAG00000013590) #28	ENSCLAG00000005849 #29	FAM228B (ENSCLAG00000004984) #30	PFN4 (ENSCLAG00000004618) #31	SF3B6 (ENSCLAG00000014512) #33	FKBP1B (ENSCLAG00000011181) #34	WDCP (ENSCLAG00000008275) #35	MFSD2B (ENSCLAG00000014189) #36	UBXN2A (ENSCLAG00000014610) #37	ATAD2B (ENSCLAG00000005215)	KLHL29 (ENSCLAG00000005598)
Degu	MODERN SPECIES	60	OTOF (ENSODEG00000007924)	DRC1 (ENSODEG00000011420) #7	SELENOI (ENSODEG00000007845) #8	HADHB (ENSODEG00000008596) #10	HADHA (ENSODEG00000009366) #12	GAREM2 (ENSODEG00000008492) #13	RAB10 (ENSODEG00000008075) #14	ENSODEG00000007394	KIF3C (ENSODEG00000008275) #15	ENSODEG00000009191	ASXL2 (ENSODEG00000009627) #16	ENSODEG00000012930	ENSODEG00000009839 #18	POMC (ENSODEG00000010910) #20	EFR3B (ENSODEG00000007566) #21	DNAJC27 (ENSODEG00000007488) #22	ADCY3 (ENSODEG00000007982) #24	PTRHD1 (ENSODEG00000007805) #26	NCOA1 (ENSODEG00000008181) #27	ENSODEG00000007584	ENSODEG00000007545 #28	PFN4 (ENSODEG00000008303) #31	ENSODEG00000007981	SF3B6 (ENSODEG00000009547) #33	ENSODEG00000010244	ENSODEG00000008882 #37	ENSODEG00000007455	ENSODEG00000007644	ENSODEG00000008643	ENSODEG00000009834	ENSODEG00000008786
Guinea pig	MODERN SPECIES	18	OTOF (ENSCPOG00000000331)	DRC1 (ENSCPOG00000000327) #7	SELENOI (ENSCPOG00000033910) #8	ADGRF3 (ENSCPOG00000000855) #9	HADHB (ENSCPOG00000005418) #10	HADHA (ENSCPOG00000005945) #12	GAREM2 (ENSCPOG00000033262) #13	RAB10 (ENSCPOG00000038345) #14	KIF3C (ENSCPOG00000037818) #15	ENSCPOG00000031398	ASXL2 (ENSCPOG00000007343) #16	ENSCPOG00000004733 #18	DNMT3A (ENSCPOG00000020900) #19	POMC (ENSCPOG00000004474) #20	EFR3B (ENSCPOG00000013235) #21	DNAJC27 (ENSCPOG00000006843) #22	ADCY3 (ENSCPOG00000005564) #24	CENPO (ENSCPOG00000005563) #25	PTRHD1 (ENSCPOG00000005561) #26	NCOA1 (ENSCPOG00000001117) #27	ENSCPOG00000031710	ITSN2 (ENSCPOG00000013505) #28	FAM228B (ENSCPOG00000030306) #30	PFN4 (ENSCPOG00000009683) #31	SF3B6 (ENSCPOG00000008016) #33	FKBP1B (ENSCPOG00000039379) #34	WDCP (ENSCPOG00000019263) #35	MFSD2B (ENSCPOG00000022662) #36	UBXN2A (ENSCPOG00000038294) #37	ATAD2B (ENSCPOG00000014176)	KLHL29 (ENSCPOG00000014174)
Naked mole-rat female	MODERN SPECIES	23	ADGRF3 (ENSHGLG00000008001) #9	HADHB (ENSHGLG00000006268) #10	HADHA (ENSHGLG00000014003) #12	GAREM2 (ENSHGLG00000018233) #13	ENSHGLG00000044435	ENSHGLG00000047199 #14	ENSHGLG00000035830	ENSHGLG00000033377 #15	ASXL2 (ENSHGLG00000006048) #16	ENSHGLG00000019126	ENSHGLG00000020949	ENSHGLG00000033034 #18	DNMT3A (ENSHGLG00000014901) #19	POMC (ENSHGLG00000046270) #20	EFR3B (ENSHGLG00000009366) #21	DNAJC27 (ENSHGLG00000043432) #22	ENSHGLG00000010620 #24	ENSHGLG00000009240 #25	ENSHGLG00000004625	ENSHGLG00000037668	ENSHGLG00000036802	ENSHGLG00000040642	ENSHGLG00000008294	ENSHGLG00000020802	ENSHGLG00000043418	ENSHGLG00000036362	ENSHGLG00000042181	ENSHGLG00000044364	ENSHGLG00000040918	ENSHGLG00000004550	ENSHGLG00000044673
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37
Marmotini	ANCESTRAL SPECIES	14	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37
Marmotini_b	ANCESTRAL SPECIES	17	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a.g #36	ENSGT00520000055567.a.b #37
Arctic ground squirrel	MODERN SPECIES		FAM166C (ENSUPAG00010007420)	OTOF (ENSUPAG00010007436)	DRC1 (ENSUPAG00010007561) #7	SELENOI (ENSUPAG00010007592) #8	ADGRF3 (ENSUPAG00010007600) #9	HADHB (ENSUPAG00010007620) #10	ENSUPAG00010007631 #12	GAREM2 (ENSUPAG00010007652) #13	RAB10 (ENSUPAG00010007668) #14	KIF3C (ENSUPAG00010007680) #15	ASXL2 (ENSUPAG00010007692) #16	ENSUPAG00010007737 #18	DNMT3A (ENSUPAG00010008081) #19	POMC (ENSUPAG00010008168) #20	EFR3B (ENSUPAG00010008174) #21	DNAJC27 (ENSUPAG00010008208) #22	ADCY3 (ENSUPAG00010008224) #24	CENPO (ENSUPAG00010008319) #25	PTRHD1 (ENSUPAG00010008340) #26	NCOA1 (ENSUPAG00010008344) #27	ENSUPAG00010008420	ITSN2 (ENSUPAG00010008430) #28	ENSUPAG00010008599 #30	PFN4 (ENSUPAG00010008634) #31	ENSUPAG00010008668 #32	SF3B6 (ENSUPAG00010008671) #33	FKBP1B (ENSUPAG00010008674) #34	WDCP (ENSUPAG00010008689) #35	MFSD2B (ENSUPAG00010008700) #36	UBXN2A (ENSUPAG00010008734) #37	ATAD2B (ENSUPAG00010008759)
Squirrel	MODERN SPECIES	93	OTOF (ENSSTOG00000020549)	DRC1 (ENSSTOG00000001637) #7	SELENOI (ENSSTOG00000001622) #8	ADGRF3 (ENSSTOG00000001610) #9	HADHB (ENSSTOG00000001601) #10	HADHA (ENSSTOG00000001593) #12	GAREM2 (ENSSTOG00000022734) #13	RAB10 (ENSSTOG00000023160) #14	KIF3C (ENSSTOG00000013740) #15	ASXL2 (ENSSTOG00000013729) #16	ENSSTOG00000034335	ENSSTOG00000015511 #18	DNMT3A (ENSSTOG00000022154) #19	POMC (ENSSTOG00000006150) #20	EFR3B (ENSSTOG00000023043) #21	DNAJC27 (ENSSTOG00000006080) #22	ADCY3 (ENSSTOG00000006049) #24	CENPO (ENSSTOG00000006039) #25	PTRHD1 (ENSSTOG00000006030) #26	NCOA1 (ENSSTOG00000005990) #27	ITSN2 (ENSSTOG00000003181) #28	ENSSTOG00000003159 #29	FAM228B (ENSSTOG00000033164) #30	PFN4 (ENSSTOG00000003151) #31	TP53I3 (ENSSTOG00000003142) #32	SF3B6 (ENSSTOG00000027077) #33	FKBP1B (ENSSTOG00000034202) #34	WDCP (ENSSTOG00000032257) #35	MFSD2B (ENSSTOG00000003123) #36	UBXN2A (ENSSTOG00000030412) #37	ATAD2B (ENSSTOG00000021066)
Alpin marmot	MODERN SPECIES	6	OTOF (ENSMMMG00000021193)	DRC1 (ENSMMMG00000021257) #7	SELENOI (ENSMMMG00000021266) #8	ADGRF3 (ENSMMMG00000021278) #9	HADHB (ENSMMMG00000021287) #10	HADHA (ENSMMMG00000021297) #12	GAREM2 (ENSMMMG00000021301) #13	ENSMMMG00000021304 #14	KIF3C (ENSMMMG00000021315) #15	ASXL2 (ENSMMMG00000021326) #16	ENSMMMG00000021345	ENSMMMG00000021366 #18	DNMT3A (ENSMMMG00000021507) #19	ENSMMMG00000021550 #20	EFR3B (ENSMMMG00000021552) #21	DNAJC27 (ENSMMMG00000021572) #22	ADCY3 (ENSMMMG00000021582) #24	CENPO (ENSMMMG00000021625) #25	PTRHD1 (ENSMMMG00000021628) #26	NCOA1 (ENSMMMG00000021650) #27	ENSMMMG00000021686	ITSN2 (ENSMMMG00000021696) #28	ENSMMMG00000021782 #29	FAM228B (ENSMMMG00000021792) #30	PFN4 (ENSMMMG00000021805) #31	TP53I3 (ENSMMMG00000021823) #32	FKBP1B (ENSMMMG00000021830) #34	WDCP (ENSMMMG00000021855) #35	MFSD2B (ENSMMMG00000021873) #36	ENSMMMG00000021893	ATAD2B (ENSMMMG00000021898)
Eurasian red squirrel	MODERN SPECIES	5	DRC1 (ENSSVLG00005019360) #7	SELENOI (ENSSVLG00005019494) #8	ENSSVLG00005019538	ADGRF3 (ENSSVLG00005019818) #9	HADHB (ENSSVLG00005020328) #10	HADHA (ENSSVLG00005020540) #12	GAREM2 (ENSSVLG00005020605) #13	RAB10 (ENSSVLG00005020645) #14	KIF3C (ENSSVLG00005020692) #15	ENSSVLG00005020731	ASXL2 (ENSSVLG00005020772) #16	ENSSVLG00005021051 #18	DNMT3A (ENSSVLG00005021301) #19	POMC (ENSSVLG00005021550) #20	EFR3B (ENSSVLG00005021623) #21	DNAJC27 (ENSSVLG00005022027) #22	ENSSVLG00005022076	ENSSVLG00005022096	ADCY3 (ENSSVLG00005022153) #24	CENPO (ENSSVLG00005022224) #25	PTRHD1 (ENSSVLG00005022312) #26	NCOA1 (ENSSVLG00005022362) #27	ENSSVLG00005022466	ITSN2 (ENSSVLG00005022588) #28	ENSSVLG00005023133 #29	FAM228B (ENSSVLG00005023199) #30	PFN4 (ENSSVLG00005023293) #31	TP53I3 (ENSSVLG00005023330) #32	ENSSVLG00005023387 #33	FKBP1B (ENSSVLG00005023436) #34	WDCP (ENSSVLG00005023512) #35
Laurasiatheria	ANCESTRAL SPECIES	13	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Eulipotyphla	ANCESTRAL SPECIES	281																ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26
Common shrew	MODERN SPECIES	1148																ENSSARG00000008116 #22
Hedgehog	MODERN SPECIES	8893																ENSEEUG00000004724 #22	ADCY3 (ENSEEUG00000004393) #24	CENPO (ENSEEUG00000004345) #25	PTRHD1 (ENSEEUG00000004263) #26
Laurasiatheria_a	ANCESTRAL SPECIES	17	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Artiodactyla	ANCESTRAL SPECIES	16	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00940000164632.b	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Suina	ANCESTRAL SPECIES	13	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000164272	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Chacoan peccary	MODERN SPECIES	776	FAM166C (ENSCWAG00000011886)	OTOF (ENSCWAG00000010240)	DRC1 (ENSCWAG00000010039) #7	SELENOI (ENSCWAG00000009999) #8	ADGRF3 (ENSCWAG00000009293) #9	HADHB (ENSCWAG00000008886) #10	HADHA (ENSCWAG00000008770) #12	GAREM2 (ENSCWAG00000008629) #13	RAB10 (ENSCWAG00000008575) #14	KIF3C (ENSCWAG00000008496) #15	ASXL2 (ENSCWAG00000008355) #16	DTNB (ENSCWAG00000006032)	DNMT3A (ENSCWAG00000005845) #19	POMC (ENSCWAG00000005810) #20	EFR3B (ENSCWAG00000005505) #21	DNAJC27 (ENSCWAG00000005420) #22	ADCY3 (ENSCWAG00000005376) #24	CENPO (ENSCWAG00000005341) #25	PTRHD1 (ENSCWAG00000005319) #26	NCOA1 (ENSCWAG00000005236) #27	ITSN2 (ENSCWAG00000004911) #28	ENSCWAG00000004865	ENSCWAG00000004843 #29	FAM228B (ENSCWAG00000004823) #30	PFN4 (ENSCWAG00000004758) #31	TP53I3 (ENSCWAG00000004737) #32	SF3B6 (ENSCWAG00000004714) #33	FKBP1B (ENSCWAG00000004665) #34	WDCP (ENSCWAG00000004635) #35	MFSD2B (ENSCWAG00000004534) #36	UBXN2A (ENSCWAG00000004513) #37
Pig	MODERN SPECIES	11	SELENOI (ENSSSCG00000030643) #8	ADGRF3 (ENSSSCG00000008570) #9	HADHB (ENSSSCG00000008569) #10	ENSSSCG00000033644	HADHA (ENSSSCG00000008571) #12	GAREM2 (ENSSSCG00000008572) #13	RAB10 (ENSSSCG00000008573) #14	ENSSSCG00000058357	KIF3C (ENSSSCG00000008574) #15	ASXL2 (ENSSSCG00000008575) #16	ENSSSCG00000051169	ENSSSCG00000008576 #18	DNMT3A (ENSSSCG00000029413) #19	ENSSSCG00000021155 #20	EFR3B (ENSSSCG00000022933) #21	DNAJC27 (ENSSSCG00000008577) #22	ADCY3 (ENSSSCG00000008578) #24	CENPO (ENSSSCG00000055702) #25	NCOA1 (ENSSSCG00000008581) #27	ITSN2 (ENSSSCG00000008583) #28	ENSSSCG00000008582 #29	FAM228B (ENSSSCG00000008584) #30	PFN4 (ENSSSCG00000008585) #31	TP53I3 (ENSSSCG00000008586) #32	SF3B6 (ENSSSCG00000008587) #33	FKBP1B (ENSSSCG00000045531) #34	WDCP (ENSSSCG00000008589) #35	MFSD2B (ENSSSCG00000008590) #36	UBXN2A (ENSSSCG00000033753) #37	ENSSSCG00000041783	ATAD2B (ENSSSCG00000008591)
Artiodactyla_a	ANCESTRAL SPECIES	15	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00940000164632.b	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Artiodactyla_b	ANCESTRAL SPECIES	14	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00940000164632.b	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Pecora	ANCESTRAL SPECIES	5	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00940000164632.b	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Yarkand deer	MODERN SPECIES	2	FAM166C (ENSCHYG00000008639)	OTOF (ENSCHYG00000008676)	DRC1 (ENSCHYG00000009228) #7	SELENOI (ENSCHYG00000009378) #8	ADGRF3 (ENSCHYG00000009487) #9	HADHB (ENSCHYG00000009640) #10	HADHA (ENSCHYG00000010003) #12	GAREM2 (ENSCHYG00000011311) #13	RAB10 (ENSCHYG00000011347) #14	KIF3C (ENSCHYG00000011405) #15	ASXL2 (ENSCHYG00000011494) #16	ENSCHYG00000011641 #18	DNMT3A (ENSCHYG00000012556) #19	POMC (ENSCHYG00000013191) #20	EFR3B (ENSCHYG00000013292) #21	DNAJC27 (ENSCHYG00000013784) #22	ADCY3 (ENSCHYG00000013932) #24	CENPO (ENSCHYG00000014066) #25	PTRHD1 (ENSCHYG00000014175) #26	NCOA1 (ENSCHYG00000014313) #27	ITSN2 (ENSCHYG00000014839) #28	ENSCHYG00000015598 #29	FAM228B (ENSCHYG00000015709) #30	ENSCHYG00000015795	PFN4 (ENSCHYG00000015825) #31	TP53I3 (ENSCHYG00000016071) #32	FKBP1B (ENSCHYG00000016279) #34	WDCP (ENSCHYG00000016368) #35	MFSD2B (ENSCHYG00000016413) #36	ENSCHYG00000016517 #37	ATAD2B (ENSCHYG00000016580)
Percora_a	ANCESTRAL SPECIES	13	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b.b #28	ENSGT00940000164632.b	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Bovidae	ANCESTRAL SPECIES	5	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b.b #28	ENSGT00940000164632.b	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Bovinae	ANCESTRAL SPECIES	4	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00960000190709	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b.b #28	ENSGT00940000164632.b	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908.s.a #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
American bison	MODERN SPECIES	3068	ENSBBBG00000017459 #7	SELENOI (ENSBBBG00000017484) #8	ADGRF3 (ENSBBBG00000017500) #9	HADHB (ENSBBBG00000017631) #10	HADHA (ENSBBBG00000017750) #12	GAREM2 (ENSBBBG00000008382) #13	RAB10 (ENSBBBG00000017772) #14	KIF3C (ENSBBBG00000017822) #15	ENSBBBG00000017835	ASXL2 (ENSBBBG00000017858) #16	DTNB (ENSBBBG00000018305)	DNMT3A (ENSBBBG00000004490) #19	ENSBBBG00000018393	POMC (ENSBBBG00000006902) #20	EFR3B (ENSBBBG00000004527) #21	DNAJC27 (ENSBBBG00000018479) #22	ADCY3 (ENSBBBG00000018516) #24	CENPO (ENSBBBG00000018527) #25	PTRHD1 (ENSBBBG00000004568) #26	NCOA1 (ENSBBBG00000018553) #27	ITSN2 (ENSBBBG00000018695) #28	ENSBBBG00000018716 #29	FAM228B (ENSBBBG00000018728) #30	PFN4 (ENSBBBG00000018737) #31	TP53I3 (ENSBBBG00000018749) #32	ENSBBBG00000018761 #33	FKBP1B (ENSBBBG00000004715) #34	WDCP (ENSBBBG00000018782) #35	MFSD2B (ENSBBBG00000004782) #36	UBXN2A (ENSBBBG00000018929) #37	ATAD2B (ENSBBBG00000018952)
Bos	ANCESTRAL SPECIES	5	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT01100000263481.n.a.a.a.b.b.b.b.b.b.b.a	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00950000183198.c.b.b.d	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00960000190709	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b.b #28	ENSGT00940000164632.b	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908.s.a #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Bos_a	ANCESTRAL SPECIES	6	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT01100000263481.n.a.a.a.b.b.b.b.b.b.b.a	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00960000190709	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908.t #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Wild yak	MODERN SPECIES	752	DRC1 (ENSBMUG00000007424) #7	SELENOI (ENSBMUG00000007207) #8	ADGRF3 (ENSBMUG00000007181) #9	HADHB (ENSBMUG00000007151) #10	HADHA (ENSBMUG00000007070) #12	GAREM2 (ENSBMUG00000007039) #13	RAB10 (ENSBMUG00000007030) #14	KIF3C (ENSBMUG00000007015) #15	ENSBMUG00000007004	ASXL2 (ENSBMUG00000006985) #16	ENSBMUG00000006789 #18	DNMT3A (ENSBMUG00000006671) #19	ENSBMUG00000006637	POMC (ENSBMUG00000006633) #20	EFR3B (ENSBMUG00000006619) #21	DNAJC27 (ENSBMUG00000006549) #22	ADCY3 (ENSBMUG00000006526) #24	CENPO (ENSBMUG00000006492) #25	PTRHD1 (ENSBMUG00000006473) #26	NCOA1 (ENSBMUG00000006387) #27	ITSN2 (ENSBMUG00000006272) #28	ENSBMUG00000006172 #29	FAM228B (ENSBMUG00000006164) #30	PFN4 (ENSBMUG00000006151) #31	TP53I3 (ENSBMUG00000006147) #32	ENSBMUG00000006141 #33	FKBP1B (ENSBMUG00000006132) #34	WDCP (ENSBMUG00000006107) #35	MFSD2B (ENSBMUG00000006096) #36	UBXN2A (ENSBMUG00000006075) #37	ATAD2B (ENSBMUG00000006045)
Domestic yak	MODERN SPECIES	28	ADGRF3 (ENSBGRG00000011740) #9	HADHB (ENSBGRG00000011944) #10	HADHA (ENSBGRG00000012469) #12	ENSBGRG00000013436	GAREM2 (ENSBGRG00000013458) #13	RAB10 (ENSBGRG00000013498) #14	KIF3C (ENSBGRG00000013558) #15	ENSBGRG00000013690	ENSBGRG00000013699	ASXL2 (ENSBGRG00000013739) #16	DTNB (ENSBGRG00000014178)	DNMT3A (ENSBGRG00000015176) #19	ENSBGRG00000015691	ENSBGRG00000015740 #20	EFR3B (ENSBGRG00000015799) #21	DNAJC27 (ENSBGRG00000016424) #22	ADCY3 (ENSBGRG00000016642) #24	CENPO (ENSBGRG00000017015) #25	PTRHD1 (ENSBGRG00000017120) #26	NCOA1 (ENSBGRG00000017177) #27	ENSBGRG00000017956	ITSN2 (ENSBGRG00000018009) #28	ENSBGRG00000018976 #29	FAM228B (ENSBGRG00000019019) #30	PFN4 (ENSBGRG00000019061) #31	TP53I3 (ENSBGRG00000019116) #32	FKBP1B (ENSBGRG00000019279) #34	WDCP (ENSBGRG00000019427) #35	MFSD2B (ENSBGRG00000019458) #36	UBXN2A (ENSBGRG00000019653) #37	ATAD2B (ENSBGRG00000019718)
Bos_b	ANCESTRAL SPECIES	16	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT01100000263481.n.a.a.a.b.b.b.b.b.b.b.a	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00960000190709	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT01100000263480.a.a.b.a.b.a.a.b.a.b.a.b	ENSGT00940000155936.b.b #28	ENSGT00940000164632.b	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908.s.a #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36
Hybrid Bos Indicus	MODERN SPECIES	2	MAPRE3 (ENSBIXG00005028362)	DPYSL5 (ENSBIXG00005028296)	ENSBIXG00005028248	SLC35F6 (ENSBIXG00005007597)	KCNK3 (ENSBIXG00005028186)	CIB4 (ENSBIXG00005028164)	FAM166C (ENSBIXG00005028118)	OTOF (ENSBIXG00005028079)	DRC1 (ENSBIXG00005028017) #7	ASXL2 (ENSBIXG00005027961) #16	ENSBIXG00005027805 #18	DNMT3A (ENSBIXG00005027616) #19	ENSBIXG00005027443	POMC (ENSBIXG00005027434) #20	EFR3B (ENSBIXG00005027378) #21	DNAJC27 (ENSBIXG00005027192) #22	ADCY3 (ENSBIXG00005027167) #24	CENPO (ENSBIXG00005027141) #25	PTRHD1 (ENSBIXG00005027086) #26	NCOA1 (ENSBIXG00005027050) #27	ENSBIXG00005026925	ENSBIXG00005004595	ITSN2 (ENSBIXG00005026878) #28	ENSBIXG00005026774 #30	PFN4 (ENSBIXG00005004569) #31	TP53I3 (ENSBIXG00005026721) #32	ENSBIXG00005004563 #33	FKBP1B (ENSBIXG00005026682) #34	WDCP (ENSBIXG00005026653) #35	MFSD2B (ENSBIXG00005026634) #36	UBXN2A (ENSBIXG00005026562) #37
Cow	MODERN SPECIES	2	SELENOI (ENSBTAG00000007837) #8	ENSBTAG00000017330	ADGRF3 (ENSBTAG00000005736) #9	HADHB (ENSBTAG00000010083) #10	HADHA (ENSBTAG00000015038) #12	ENSBTAG00000054613	GAREM2 (ENSBTAG00000015037) #13	RAB10 (ENSBTAG00000000985) #14	KIF3C (ENSBTAG00000019138) #15	ASXL2 (ENSBTAG00000019983) #16	DTNB (ENSBTAG00000021072) #18	DNMT3A (ENSBTAG00000021143) #19	ENSBTAG00000054828	POMC (ENSBTAG00000007897) #20	EFR3B (ENSBTAG00000007888) #21	DNAJC27 (ENSBTAG00000018239) #22	ADCY3 (ENSBTAG00000018705) #24	CENPO (ENSBTAG00000015014) #25	PTRHD1 (ENSBTAG00000015012) #26	NCOA1 (ENSBTAG00000015007) #27	ENSBTAG00000049243	ITSN2 (ENSBTAG00000023172) #28	ENSBTAG00000051942	FAM228A (ENSBTAG00000000261) #29	FAM228B (ENSBTAG00000030864) #30	PFN4 (ENSBTAG00000003404) #31	TP53I3 (ENSBTAG00000003405) #32	SF3B6 (ENSBTAG00000003407) #33	FKBP1B (ENSBTAG00000003409) #34	WDCP (ENSBTAG00000016987) #35	MFSD2B (ENSBTAG00000002034) #36
Caprinae	ANCESTRAL SPECIES	9	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b.bc #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Rambouillet Sheep	MODERN SPECIES	19	OTOF (ENSOARG00020000652)	DRC1 (ENSOARG00020000494) #7	SELENOI (ENSOARG00020000449) #8	ADGRF3 (ENSOARG00020000413) #9	HADHB (ENSOARG00020000348) #10	HADHA (ENSOARG00020000289) #12	GAREM2 (ENSOARG00020000249) #13	RAB10 (ENSOARG00020000225) #14	ENSOARG00020000209	KIF3C (ENSOARG00020022724) #15	ASXL2 (ENSOARG00020022527) #16	ENSOARG00020022321 #18	DNMT3A (ENSOARG00020022113) #19	POMC (ENSOARG00020022037) #20	EFR3B (ENSOARG00020021643) #21	DNAJC27 (ENSOARG00020021503) #22	ADCY3 (ENSOARG00020021236) #24	CENPO (ENSOARG00020021166) #25	PTRHD1 (ENSOARG00020021146) #26	NCOA1 (ENSOARG00020020912) #27	ITSN2 (ENSOARG00020020291) #28	ENSOARG00020020223 #29	FAM228B (ENSOARG00020020153) #30	PFN4 (ENSOARG00020020118) #31	TP53I3 (ENSOARG00020020085) #32	SF3B6 (ENSOARG00020020043) #33	FKBP1B (ENSOARG00020019964) #34	MFSD2B (ENSOARG00020019757) #36	UBXN2A (ENSOARG00020019662) #37	ENSOARG00020019629	ATAD2B (ENSOARG00020019344)
Goat	MODERN SPECIES	2	FAM166C (ENSCHIG00000017427)	DRC1 (ENSCHIG00000001933) #7	ENSCHIG00000013868 #8	ENSCHIG00000023283	HADHB (ENSCHIG00000024735) #10	HADHA (ENSCHIG00000022677) #12	GAREM2 (ENSCHIG00000022994) #13	RAB10 (ENSCHIG00000007930) #14	KIF3C (ENSCHIG00000005084) #15	ENSCHIG00000009652	ASXL2 (ENSCHIG00000023616) #16	ENSCHIG00000010663 #18	DNMT3A (ENSCHIG00000014247) #19	POMC (ENSCHIG00000024414) #20	EFR3B (ENSCHIG00000013224) #21	DNAJC27 (ENSCHIG00000013821) #22	ADCY3 (ENSCHIG00000025812) #24	ENSCHIG00000014194 #25	PTRHD1 (ENSCHIG00000014757) #26	NCOA1 (ENSCHIG00000016656) #27	ITSN2 (ENSCHIG00000012898) #28	ENSCHIG00000012771 #29	FAM228B (ENSCHIG00000022823) #30	PFN4 (ENSCHIG00000026277) #31	TP53I3 (ENSCHIG00000007693) #32	SF3B6 (ENSCHIG00000009902) #33	FKBP1B (ENSCHIG00000025133) #34	WDCP (ENSCHIG00000017430) #35	MFSD2B (ENSCHIG00000015093) #36	UBXN2A (ENSCHIG00000008772) #37	ATAD2B (ENSCHIG00000016699)
Siberian musk deer	MODERN SPECIES	240	ENSMMSG00000004743 #7	ENSMMSG00000004719 #7	SELENOI (ENSMMSG00000004311) #8	ADGRF3 (ENSMMSG00000004296) #9	HADHB (ENSMMSG00000004251) #10	HADHA (ENSMMSG00000004193) #12	GAREM2 (ENSMMSG00000004177) #13	ENSMMSG00000004163 #14	KIF3C (ENSMMSG00000004152) #15	ASXL2 (ENSMMSG00000004131) #16	ENSMMSG00000004026 #18	DNMT3A (ENSMMSG00000003949) #19	ENSMMSG00000003931	POMC (ENSMMSG00000003919) #20	EFR3B (ENSMMSG00000003852) #21	DNAJC27 (ENSMMSG00000003798) #22	ADCY3 (ENSMMSG00000003774) #24	CENPO (ENSMMSG00000003754) #25	ENSMMSG00000003745 #26	NCOA1 (ENSMMSG00000003674) #27	ITSN2 (ENSMMSG00000003485) #28	ENSMMSG00000003424 #29	PFN4 (ENSMMSG00000003409) #31	TP53I3 (ENSMMSG00000003394) #32	FAM228B (ENSMMSG00000003378) #30	ENSMMSG00000003362 #33	FKBP1B (ENSMMSG00000003309) #34	ENSMMSG00000003296	WDCP (ENSMMSG00000003288) #35	MFSD2B (ENSMMSG00000003262) #36	UBXN2A (ENSMMSG00000003243) #37
Cetacea	ANCESTRAL SPECIES	16	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b.m #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959.d #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Odontoceti	ANCESTRAL SPECIES	15	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b.m #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959.d #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Odontoceti_a	ANCESTRAL SPECIES	12	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b.m #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959.d #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Odontoceti_b	ANCESTRAL SPECIES	15	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b.m #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959.d #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Monodontidae	ANCESTRAL SPECIES	13	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b.m #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959.d #26	ENSGT00950000183021.b #27	ENSGT00940000154259.l.q.a.b	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Narwhal	MODERN SPECIES	305	KCNK3 (ENSMMNG00015007259)	CIB4 (ENSMMNG00015007284)	OTOF (ENSMMNG00015007376)	ENSMMNG00015007617 #7	SELENOI (ENSMMNG00015007642) #8	HADHB (ENSMMNG00015007735) #10	HADHA (ENSMMNG00015007825) #12	GAREM2 (ENSMMNG00015007895) #13	RAB10 (ENSMMNG00015007937) #14	KIF3C (ENSMMNG00015007955) #15	ASXL2 (ENSMMNG00015008012) #16	ENSMMNG00015008102 #18	DNMT3A (ENSMMNG00015008178) #19	POMC (ENSMMNG00015008233) #20	EFR3B (ENSMMNG00015008257) #21	DNAJC27 (ENSMMNG00015008298) #22	ADCY3 (ENSMMNG00015008323) #24	CENPO (ENSMMNG00015008336) #25	PTRHD1 (ENSMMNG00015008347) #26	NCOA1 (ENSMMNG00015008366) #27	ENSMMNG00015008406	ITSN2 (ENSMMNG00015008479) #28	ENSMMNG00015008570 #29	FAM228B (ENSMMNG00015008593) #30	PFN4 (ENSMMNG00015008611) #31	TP53I3 (ENSMMNG00015008625) #32	SF3B6 (ENSMMNG00015008636) #33	FKBP1B (ENSMMNG00015008655) #34	WDCP (ENSMMNG00015008672) #35	MFSD2B (ENSMMNG00015008694) #36	UBXN2A (ENSMMNG00015008718) #37
Beluga whale	MODERN SPECIES	37	ENSDLEG00000000258	OTOF (ENSDLEG00000000377)	DRC1 (ENSDLEG00000000706) #7	SELENOI (ENSDLEG00000000757) #8	HADHB (ENSDLEG00000000782) #10	HADHA (ENSDLEG00000000819) #12	ENSDLEG00000000841	GAREM2 (ENSDLEG00000000854) #13	RAB10 (ENSDLEG00000000876) #14	KIF3C (ENSDLEG00000000897) #15	ASXL2 (ENSDLEG00000000951) #16	DTNB (ENSDLEG00000001035)	DNMT3A (ENSDLEG00000001166) #19	POMC (ENSDLEG00000001217) #20	EFR3B (ENSDLEG00000001247) #21	DNAJC27 (ENSDLEG00000001321) #22	ADCY3 (ENSDLEG00000001361) #24	CENPO (ENSDLEG00000001398) #25	NCOA1 (ENSDLEG00000001416) #27	ENSDLEG00000001459	ITSN2 (ENSDLEG00000001766) #28	FAM228B (ENSDLEG00000003177) #30	PFN4 (ENSDLEG00000003231) #31	TP53I3 (ENSDLEG00000003236) #32	SF3B6 (ENSDLEG00000003252) #33	FKBP1B (ENSDLEG00000003261) #34	WDCP (ENSDLEG00000003277) #35	MFSD2B (ENSDLEG00000003286) #36	UBXN2A (ENSDLEG00000003355) #37	ENSDLEG00000003368	ENSDLEG00000003376
Vaquita	MODERN SPECIES	4	CIB4 (ENSPSNG00000010868)	OTOF (ENSPSNG00000009430)	DRC1 (ENSPSNG00000009090) #7	SELENOI (ENSPSNG00000009045) #8	HADHB (ENSPSNG00000008833) #10	HADHA (ENSPSNG00000008638) #12	GAREM2 (ENSPSNG00000008565) #13	RAB10 (ENSPSNG00000008511) #14	KIF3C (ENSPSNG00000008462) #15	ENSPSNG00000008422 #16	ENSPSNG00000008385	ENSPSNG00000008291 #18	DNMT3A (ENSPSNG00000008093) #19	POMC (ENSPSNG00000008036) #20	EFR3B (ENSPSNG00000007711) #21	DNAJC27 (ENSPSNG00000007648) #22	CENPO (ENSPSNG00000007599) #25	ADCY3 (ENSPSNG00000007484) #24	ENSPSNG00000007435	NCOA1 (ENSPSNG00000007384) #27	ITSN2 (ENSPSNG00000007059) #28	ENSPSNG00000006856 #29	PFN4 (ENSPSNG00000006828) #31	FAM228B (ENSPSNG00000006789) #30	TP53I3 (ENSPSNG00000006747) #32	SF3B6 (ENSPSNG00000006711) #33	FKBP1B (ENSPSNG00000006673) #34	WDCP (ENSPSNG00000006641) #35	MFSD2B (ENSPSNG00000006537) #36	UBXN2A (ENSPSNG00000006489) #37	ATAD2B (ENSPSNG00000006447)
Dolphin	MODERN SPECIES	2956																DNAJC27 (ENSTTRG00000015163) #22	ADCY3 (ENSTTRG00000015147) #24	CENPO (ENSTTRG00000015137) #25	PTRHD1 (ENSTTRG00000015128) #26	NCOA1 (ENSTTRG00000015113) #27
Sperm whale	MODERN SPECIES	3	ENSPCTG00005004838	OTOF (ENSPCTG00005004362)	ENSPCTG00005004272	DRC1 (ENSPCTG00005004253) #7	SELENOI (ENSPCTG00005004235) #8	ENSPCTG00005004220	HADHB (ENSPCTG00005004125) #10	HADHA (ENSPCTG00005021814) #12	GAREM2 (ENSPCTG00005021751) #13	RAB10 (ENSPCTG00005021719) #14	ASXL2 (ENSPCTG00005021682) #16	DTNB (ENSPCTG00005021592)	DNMT3A (ENSPCTG00005021441) #19	POMC (ENSPCTG00005021388) #20	EFR3B (ENSPCTG00005021246) #21	DNAJC27 (ENSPCTG00005021182) #22	ADCY3 (ENSPCTG00005021158) #24	CENPO (ENSPCTG00005021111) #25	PTRHD1 (ENSPCTG00005021089) #26	ENSPCTG00005021078	NCOA1 (ENSPCTG00005020989) #27	ITSN2 (ENSPCTG00005018639) #28	PFN4 (ENSPCTG00005018269) #31	FAM228B (ENSPCTG00005018071) #30	SF3B6 (ENSPCTG00005018047) #33	FKBP1B (ENSPCTG00005017988) #34	WDCP (ENSPCTG00005017956) #35	MFSD2B (ENSPCTG00005017691) #36	UBXN2A (ENSPCTG00005017638) #37	ATAD2B (ENSPCTG00005017541)	KLHL29 (ENSPCTG00005017130)
Blue whale	MODERN SPECIES	4	FAM166C (ENSBMSG00010011346)	OTOF (ENSBMSG00010011447)	DRC1 (ENSBMSG00010011621) #7	SELENOI (ENSBMSG00010011740) #8	ADGRF3 (ENSBMSG00010011811) #9	HADHB (ENSBMSG00010011872) #10	HADHA (ENSBMSG00010011954) #12	RAB10 (ENSBMSG00010012106) #14	KIF3C (ENSBMSG00010012120) #15	ASXL2 (ENSBMSG00010012153) #16	DTNB (ENSBMSG00010012231)	ENSBMSG00010012314	DNMT3A (ENSBMSG00010012344) #19	POMC (ENSBMSG00010012400) #20	EFR3B (ENSBMSG00010012424) #21	DNAJC27 (ENSBMSG00010012472) #22	ADCY3 (ENSBMSG00010012510) #24	CENPO (ENSBMSG00010012541) #25	PTRHD1 (ENSBMSG00010012561) #26	NCOA1 (ENSBMSG00010012629) #27	ITSN2 (ENSBMSG00010012828) #28	FAM228B (ENSBMSG00010012972) #30	PFN4 (ENSBMSG00010012996) #31	ENSBMSG00010013113	TP53I3 (ENSBMSG00010013124) #32	SF3B6 (ENSBMSG00010013141) #33	FKBP1B (ENSBMSG00010013149) #34	WDCP (ENSBMSG00010013158) #35	MFSD2B (ENSBMSG00010013171) #36	UBXN2A (ENSBMSG00010013209) #37	ENSBMSG00010013222
Camelidae	ANCESTRAL SPECIES	12	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000164272	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Arabian camel	MODERN SPECIES	6	OTOF (ENSCDRG00005012657)	DRC1 (ENSCDRG00005012478) #7	SELENOI (ENSCDRG00005012423) #8	ENSCDRG00005012380	ADGRF3 (ENSCDRG00005012247) #9	HADHB (ENSCDRG00005011980) #10	HADHA (ENSCDRG00005011749) #12	GAREM2 (ENSCDRG00005011666) #13	RAB10 (ENSCDRG00005011600) #14	KIF3C (ENSCDRG00005011518) #15	ASXL2 (ENSCDRG00005011334) #16	ENSCDRG00005010397 #18	DNMT3A (ENSCDRG00005010068) #19	ENSCDRG00005010039 #20	EFR3B (ENSCDRG00005009818) #21	DNAJC27 (ENSCDRG00005009711) #22	ENSCDRG00005009686	ADCY3 (ENSCDRG00005009564) #24	CENPO (ENSCDRG00005009418) #25	PTRHD1 (ENSCDRG00005009361) #26	NCOA1 (ENSCDRG00005008961) #27	ITSN2 (ENSCDRG00005008345) #28	ENSCDRG00005008220 #29	FAM228B (ENSCDRG00005008179) #30	PFN4 (ENSCDRG00005008145) #31	TP53I3 (ENSCDRG00005008122) #32	SF3B6 (ENSCDRG00005008085) #33	FKBP1B (ENSCDRG00005008005) #34	WDCP (ENSCDRG00005007980) #35	MFSD2B (ENSCDRG00005007767) #36	UBXN2A (ENSCDRG00005007692) #37
Alpaca	MODERN SPECIES	5097																DNAJC27 (ENSVPAG00000006953) #22
Laurasiatheria_b	ANCESTRAL SPECIES	17	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Carnivora	ANCESTRAL SPECIES	19	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Caniformia	ANCESTRAL SPECIES	18	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Caniformia_b	ANCESTRAL SPECIES	11	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908.y #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Ursidae	ANCESTRAL SPECIES	9	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908.y #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b.d
Ursus	ANCESTRAL SPECIES	27	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00390000007479.z	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908.y #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b.d
American black bear	MODERN SPECIES	906													DNMT3A (ENSUAMG00000009642) #19	POMC (ENSUAMG00000009593) #20	EFR3B (ENSUAMG00000009587) #21	DNAJC27 (ENSUAMG00000009585) #22
Polar bear	MODERN SPECIES	223	ENSUMAG00000022131	FAM166C (ENSUMAG00000022134)	OTOF (ENSUMAG00000022140)	DRC1 (ENSUMAG00000022194) #7	SELENOI (ENSUMAG00000022269) #8	ENSUMAG00000022277 #9	HADHB (ENSUMAG00000022281) #10	HADHA (ENSUMAG00000022289) #12	RAB10 (ENSUMAG00000022303) #14	KIF3C (ENSUMAG00000022313) #15	ENSUMAG00000022340	ASXL2 (ENSUMAG00000022345) #16	ENSUMAG00000022354 #18	DNMT3A (ENSUMAG00000022397) #19	EFR3B (ENSUMAG00000022545) #21	DNAJC27 (ENSUMAG00000022558) #22	ADCY3 (ENSUMAG00000022574) #24	CENPO (ENSUMAG00000022621) #25	NCOA1 (ENSUMAG00000022630) #27	ITSN2 (ENSUMAG00000022686) #28	ENSUMAG00000022822 #29	FAM228B (ENSUMAG00000022825) #30	PFN4 (ENSUMAG00000022828) #31	TP53I3 (ENSUMAG00000022832) #32	SF3B6 (ENSUMAG00000022835) #33	ENSUMAG00000022839	WDCP (ENSUMAG00000022841) #35	MFSD2B (ENSUMAG00000022848) #36	UBXN2A (ENSUMAG00000022883) #37	ATAD2B (ENSUMAG00000022911)	KLHL29 (ENSUMAG00000023015)
Giant Panda	MODERN SPECIES	14	OTOF (ENSAMEG00000002163)	DRC1 (ENSAMEG00000002238) #7	SELENOI (ENSAMEG00000002275) #8	ADGRF3 (ENSAMEG00000002279) #9	HADHB (ENSAMEG00000002288) #10	HADHA (ENSAMEG00000002313) #12	GAREM2 (ENSAMEG00000026829) #13	ENSAMEG00000002360 #14	KIF3C (ENSAMEG00000002379) #15	ASXL2 (ENSAMEG00000002397) #16	ENSAMEG00000028157	ENSAMEG00000002424 #18	DNMT3A (ENSAMEG00000002443) #19	POMC (ENSAMEG00000002511) #20	EFR3B (ENSAMEG00000002518) #21	DNAJC27 (ENSAMEG00000002554) #22	ADCY3 (ENSAMEG00000002572) #24	CENPO (ENSAMEG00000002642) #25	PTRHD1 (ENSAMEG00000026884) #26	NCOA1 (ENSAMEG00000002653) #27	ITSN2 (ENSAMEG00000002721) #28	ENSAMEG00000002768 #29	ENSAMEG00000025446 #30	PFN4 (ENSAMEG00000002778) #31	TP53I3 (ENSAMEG00000002781) #32	SF3B6 (ENSAMEG00000002786) #33	FKBP1B (ENSAMEG00000029795) #34	WDCP (ENSAMEG00000002801) #35	MFSD2B (ENSAMEG00000002807) #36	UBXN2A (ENSAMEG00000002843) #37	ATAD2B (ENSAMEG00000002853)
Mustelinae	ANCESTRAL SPECIES	55	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908.y #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b	ENSGT00940000158824
Ferret	MODERN SPECIES	178										KIF3C (ENSMPUG00000014087) #15	ASXL2 (ENSMPUG00000014077) #16	ENSMPUG00000014062 #18	DNMT3A (ENSMPUG00000014044) #19	POMC (ENSMPUG00000014041) #20	EFR3B (ENSMPUG00000014035) #21	DNAJC27 (ENSMPUG00000014032) #22	ADCY3 (ENSMPUG00000014026) #24	CENPO (ENSMPUG00000014021) #25	PTRHD1 (ENSMPUG00000014016) #26	NCOA1 (ENSMPUG00000014013) #27	ITSN2 (ENSMPUG00000014000) #28	FAM228B (ENSMPUG00000013988) #30	PFN4 (ENSMPUG00000013981) #31	TP53I3 (ENSMPUG00000013959) #32	SF3B6 (ENSMPUG00000013957) #33	FKBP1B (ENSMPUG00000013941) #34	WDCP (ENSMPUG00000013937) #35	MFSD2B (ENSMPUG00000013875) #36	UBXN2A (ENSMPUG00000013862) #37	ATAD2B (ENSMPUG00000013855)	KLHL29 (ENSMPUG00000013755)
American mink	MODERN SPECIES	7	SELENOI (ENSNVIG00000011344) #8	ADGRF3 (ENSNVIG00000011368) #9	HADHB (ENSNVIG00000011410) #10	HADHA (ENSNVIG00000011530) #12	GAREM2 (ENSNVIG00000011575) #13	RAB10 (ENSNVIG00000011586) #14	ENSNVIG00000011606	KIF3C (ENSNVIG00000011611) #15	ASXL2 (ENSNVIG00000011638) #16	ENSNVIG00000011664	ENSNVIG00000011667	ENSNVIG00000011719	ENSNVIG00000012087	DNMT3A (ENSNVIG00000012095) #19	EFR3B (ENSNVIG00000012176) #21	DNAJC27 (ENSNVIG00000012276) #22	ADCY3 (ENSNVIG00000012293) #24	CENPO (ENSNVIG00000012341) #25	ENSNVIG00000012352 #26	NCOA1 (ENSNVIG00000012372) #27	ITSN2 (ENSNVIG00000012550) #28	ENSNVIG00000012622 #31	TP53I3 (ENSNVIG00000012627) #32	ENSNVIG00000012654 #33	ENSNVIG00000012661	WDCP (ENSNVIG00000012667) #35	MFSD2B (ENSNVIG00000012679) #36	UBXN2A (ENSNVIG00000012711) #37	ATAD2B (ENSNVIG00000012717)	KLHL29 (ENSNVIG00000012776)	ENSNVIG00000012791
Canidae	ANCESTRAL SPECIES	46	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b.cb #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00990000213351	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00940000153609.b.w.b	ENSGT00550000074694.b
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b.cb #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00990000213351	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00940000164632.b	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00940000153609.b.w.b
Dingo	MODERN SPECIES	223	OTOF (ENSCAFG00020024797)	DRC1 (ENSCAFG00020024833) #7	SELENOI (ENSCAFG00020024863) #8	ADGRF3 (ENSCAFG00020024878) #9	ENSCAFG00020024883 #10	HADHA (ENSCAFG00020024925) #12	GAREM2 (ENSCAFG00020025095) #13	RAB10 (ENSCAFG00020025098) #14	ENSCAFG00020025102	KIF3C (ENSCAFG00020025103) #15	ASXL2 (ENSCAFG00020025120) #16	ENSCAFG00020025160 #18	DNMT3A (ENSCAFG00020025176) #19	POMC (ENSCAFG00020025221) #20	EFR3B (ENSCAFG00020025238) #21	DNAJC27 (ENSCAFG00020025277) #22	ADCY3 (ENSCAFG00020025293) #24	CENPO (ENSCAFG00020025375) #25	NCOA1 (ENSCAFG00020025385) #27	ITSN2 (ENSCAFG00020025489) #28	ENSCAFG00020025533	FAM228B (ENSCAFG00020025572) #30	PFN4 (ENSCAFG00020025574) #31	TP53I3 (ENSCAFG00020025575) #32	SF3B6 (ENSCAFG00020025576) #33	FKBP1B (ENSCAFG00020025577) #34	WDCP (ENSCAFG00020025578) #35	MFSD2B (ENSCAFG00020025582) #36	ENSCAFG00020025601 #37	ATAD2B (ENSCAFG00020025604)	ENSCAFG00020025616
Dog	MODERN SPECIES	8	FAM166C (ENSCAFG00845028780)	OTOF (ENSCAFG00845028326)	DRC1 (ENSCAFG00845028116) #7	SELENOI (ENSCAFG00845028041) #8	ADGRF3 (ENSCAFG00845027979) #9	ENSCAFG00845027719 #10	HADHA (ENSCAFG00845027504) #12	GAREM2 (ENSCAFG00845027452) #13	RAB10 (ENSCAFG00845027419) #14	KIF3C (ENSCAFG00845027365) #15	ASXL2 (ENSCAFG00845027213) #16	DTNB (ENSCAFG00845026621) #18	DNMT3A (ENSCAFG00845026173) #19	POMC (ENSCAFG00845026092) #20	EFR3B (ENSCAFG00845025549) #21	DNAJC27 (ENSCAFG00845025362) #22	ADCY3 (ENSCAFG00845025117) #24	CENPO (ENSCAFG00845024979) #25	PTRHD1 (ENSCAFG00845024920) #26	NCOA1 (ENSCAFG00845024663) #27	ITSN2 (ENSCAFG00845023729) #28	ENSCAFG00845023479 #32	ENSCAFG00845023435	ENSCAFG00845023204 #36	ENSCAFG00845023021 #30	PFN4 (ENSCAFG00845022929) #31	TP53I3 (ENSCAFG00845022815) #32	SF3B6 (ENSCAFG00845022757) #33	ENSCAFG00845022727 #33	FKBP1B (ENSCAFG00845022652) #34	WDCP (ENSCAFG00845022467) #35
Red fox	MODERN SPECIES	189	DRC1 (ENSVVUG00000015954) #7	SELENOI (ENSVVUG00000015951) #8	ADGRF3 (ENSVVUG00000015946) #9	HADHB (ENSVVUG00000015924) #10	HADHA (ENSVVUG00000015907) #12	GAREM2 (ENSVVUG00000015897) #13	RAB10 (ENSVVUG00000015895) #14	ENSVVUG00000015893	KIF3C (ENSVVUG00000015885) #15	ENSVVUG00000015876	ASXL2 (ENSVVUG00000015856) #16	DTNB (ENSVVUG00000015770) #18	DNMT3A (ENSVVUG00000015409) #19	POMC (ENSVVUG00000015392) #20	EFR3B (ENSVVUG00000015262) #21	DNAJC27 (ENSVVUG00000015241) #22	CENPO (ENSVVUG00000015237) #25	ADCY3 (ENSVVUG00000014909) #24	NCOA1 (ENSVVUG00000013134) #27	ITSN2 (ENSVVUG00000011007) #28	FAM228B (ENSVVUG00000010899) #30	PFN4 (ENSVVUG00000010887) #31	TP53I3 (ENSVVUG00000010879) #32	SF3B6 (ENSVVUG00000010874) #33	FKBP1B (ENSVVUG00000010837) #34	WDCP (ENSVVUG00000010817) #35	MFSD2B (ENSVVUG00000010767) #36
Felidae	ANCESTRAL SPECIES	3	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Panthera	ANCESTRAL SPECIES	2	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b	ENSGT00940000158824
lion	MODERN SPECIES	3	SELENOI (ENSPLOG00000002450) #8	ADGRF3 (ENSPLOG00000002389) #9	ENSPLOG00000002341	ENSPLOG00000002330	ENSPLOG00000002151 #10	HADHA (ENSPLOG00000001953) #12	GAREM2 (ENSPLOG00000001895) #13	RAB10 (ENSPLOG00000001873) #14	KIF3C (ENSPLOG00000001843) #15	ENSPLOG00000001827	ASXL2 (ENSPLOG00000001803) #16	ENSPLOG00000001685 #18	DNMT3A (ENSPLOG00000001561) #19	POMC (ENSPLOG00000001533) #20	EFR3B (ENSPLOG00000001467) #21	DNAJC27 (ENSPLOG00000001417) #22	ADCY3 (ENSPLOG00000001367) #24	CENPO (ENSPLOG00000001323) #25	PTRHD1 (ENSPLOG00000001311) #26	NCOA1 (ENSPLOG00000001183) #27	ITSN2 (ENSPLOG00000000988) #28	FAM228B (ENSPLOG00000000790) #30	PFN4 (ENSPLOG00000000771) #31	TP53I3 (ENSPLOG00000000741) #32	SF3B6 (ENSPLOG00000000707) #33	FKBP1B (ENSPLOG00000000677) #34	WDCP (ENSPLOG00000000585) #35	MFSD2B (ENSPLOG00000000549) #36	UBXN2A (ENSPLOG00000000531) #37	ATAD2B (ENSPLOG00000000487)	KLHL29 (ENSPLOG00000000329)
leopard	MODERN SPECIES		FAM166C (ENSPPRG00000000546)	OTOF (ENSPPRG00000000530)	DRC1 (ENSPPRG00000000495) #7	SELENOI (ENSPPRG00000000475) #8	ADGRF3 (ENSPPRG00000000445) #9	HADHB (ENSPPRG00000000393) #10	HADHA (ENSPPRG00000000312) #12	GAREM2 (ENSPPRG00000000295) #13	RAB10 (ENSPPRG00000000261) #14	KIF3C (ENSPPRG00000000256) #15	ASXL2 (ENSPPRG00000000239) #16	DTNB (ENSPPRG00000000149)	DNMT3A (ENSPPRG00000022803) #19	POMC (ENSPPRG00000022853) #20	EFR3B (ENSPPRG00000022872) #21	DNAJC27 (ENSPPRG00000022920) #22	ADCY3 (ENSPPRG00000022933) #24	CENPO (ENSPPRG00000022951) #25	PTRHD1 (ENSPPRG00000022961) #26	NCOA1 (ENSPPRG00000022996) #27	ITSN2 (ENSPPRG00000023119) #28	FAM228B (ENSPPRG00000023222) #30	PFN4 (ENSPPRG00000023234) #31	TP53I3 (ENSPPRG00000023247) #32	SF3B6 (ENSPPRG00000023257) #33	FKBP1B (ENSPPRG00000023267) #34	WDCP (ENSPPRG00000022296) #35	MFSD2B (ENSPPRG00000022250) #36	UBXN2A (ENSPPRG00000022151) #37	ATAD2B (ENSPPRG00000022083)	KLHL29 (ENSPPRG00000022044)
Tiger	MODERN SPECIES	287	ENSPTIG00000018187	CIB4 (ENSPTIG00000018756)	FAM166C (ENSPTIG00000019670)	OTOF (ENSPTIG00000021218)	DRC1 (ENSPTIG00000020695) #7	SELENOI (ENSPTIG00000021799) #8	ADGRF3 (ENSPTIG00000002861) #9	HADHB (ENSPTIG00000009770) #10	HADHA (ENSPTIG00000014280) #12	RAB10 (ENSPTIG00000014861) #14	KIF3C (ENSPTIG00000015228) #15	DTNB (ENSPTIG00000019750)	DNMT3A (ENSPTIG00000017909) #19	ENSPTIG00000006949 #20	EFR3B (ENSPTIG00000007845) #21	DNAJC27 (ENSPTIG00000013443) #22
Cat	MODERN SPECIES	2	SELENOI (ENSFCAG00000032898) #8	ADGRF3 (ENSFCAG00000009009) #9	ENSFCAG00000047852	ENSFCAG00000050388	HADHB (ENSFCAG00000014934) #10	HADHA (ENSFCAG00000014933) #12	GAREM2 (ENSFCAG00000023983) #13	RAB10 (ENSFCAG00000024401) #14	KIF3C (ENSFCAG00000015635) #15	ASXL2 (ENSFCAG00000003836) #16	ENSFCAG00000037234	DTNB (ENSFCAG00000000232) #18	DNMT3A (ENSFCAG00000003659) #19	POMC (ENSFCAG00000003658) #20	EFR3B (ENSFCAG00000024517) #21	DNAJC27 (ENSFCAG00000038919) #22	ADCY3 (ENSFCAG00000003651) #24	CENPO (ENSFCAG00000028869) #25	PTRHD1 (ENSFCAG00000003648) #26	NCOA1 (ENSFCAG00000025791) #27	ITSN2 (ENSFCAG00000004308) #28	ENSFCAG00000037101 #29	FAM228B (ENSFCAG00000028526) #30	PFN4 (ENSFCAG00000004306) #31	TP53I3 (ENSFCAG00000004305) #32	SF3B6 (ENSFCAG00000031365) #33	ENSFCAG00000040740 #34	WDCP (ENSFCAG00000004303) #35	MFSD2B (ENSFCAG00000004302) #36	UBXN2A (ENSFCAG00000028218) #37	ATAD2B (ENSFCAG00000030573)
Laurasiatheria_c	ANCESTRAL SPECIES	14	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Equus	ANCESTRAL SPECIES	7	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000164272	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37	ENSGT00550000074694.b
Horse	MODERN SPECIES	6	OTOF (ENSECAG00000002692)	DRC1 (ENSECAG00000020710) #7	SELENOI (ENSECAG00000046166) #8	ADGRF3 (ENSECAG00000007460) #9	HADHB (ENSECAG00000054935) #10	HADHA (ENSECAG00000015725) #12	GAREM2 (ENSECAG00000023175) #13	RAB10 (ENSECAG00000032798) #14	KIF3C (ENSECAG00000000746) #15	ASXL2 (ENSECAG00000010885) #16	ENSECAG00000054333	DTNB (ENSECAG00000014987)	DNMT3A (ENSECAG00000025086) #19	POMC (ENSECAG00000016388) #20	EFR3B (ENSECAG00000016528) #21	DNAJC27 (ENSECAG00000024595) #22	ADCY3 (ENSECAG00000008344) #24	CENPO (ENSECAG00000017127) #25	PTRHD1 (ENSECAG00000017730) #26	NCOA1 (ENSECAG00000017819) #27	ENSECAG00000028792	ITSN2 (ENSECAG00000020425) #28	ENSECAG00000014593 #29	PFN4 (ENSECAG00000014609) #31	FAM228B (ENSECAG00000049221) #30	TP53I3 (ENSECAG00000014969) #32	SF3B6 (ENSECAG00000015618) #33	FKBP1B (ENSECAG00000027916)	WDCP (ENSECAG00000019020) #35	MFSD2B (ENSECAG00000019046) #36	UBXN2A (ENSECAG00000020144) #37
Donkey	MODERN SPECIES	26	FAM166C (ENSEASG00005012638)	OTOF (ENSEASG00005012660)	DRC1 (ENSEASG00005012692) #7	SELENOI (ENSEASG00005012697) #8	ADGRF3 (ENSEASG00005022225) #9	ENSEASG00005022116 #10	HADHA (ENSEASG00005011596) #12	GAREM2 (ENSEASG00005011592) #13	RAB10 (ENSEASG00005011588) #14	KIF3C (ENSEASG00005011585) #15	ASXL2 (ENSEASG00005011580) #16	DTNB (ENSEASG00005011562)	DNMT3A (ENSEASG00005010712) #19	POMC (ENSEASG00005010600) #20	EFR3B (ENSEASG00005010599) #21	DNAJC27 (ENSEASG00005010598) #22	ADCY3 (ENSEASG00005010572) #24	CENPO (ENSEASG00005010597) #25	ENSEASG00005034326 #26	NCOA1 (ENSEASG00005010550) #27	ITSN2 (ENSEASG00005010089) #28	ENSEASG00005009998 #29	FAM228B (ENSEASG00005029839) #30	ENSEASG00005027350 #31	TP53I3 (ENSEASG00005009994) #32	SF3B6 (ENSEASG00005026473) #33	ENSEASG00005038315 #34	WDCP (ENSEASG00005009991) #35	MFSD2B (ENSEASG00005009987) #36	UBXN2A (ENSEASG00005009983) #37	ATAD2B (ENSEASG00005009516)
Chiroptera	ANCESTRAL SPECIES	10	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000164272	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Megabat	MODERN SPECIES	3497														POMC (ENSPVAG00000017525) #20	EFR3B (ENSPVAG00000017522) #21	DNAJC27 (ENSPVAG00000017520) #22	ADCY3 (ENSPVAG00000017518) #24	CENPO (ENSPVAG00000017516) #25	PTRHD1 (ENSPVAG00000017514) #26	NCOA1 (ENSPVAG00000017511) #27
Microchiroptera	ANCESTRAL SPECIES	14	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00960000189637	ENSGT00940000155936.b #28	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Microbat	MODERN SPECIES	1031													DNMT3A (ENSMLUG00000014159) #19	POMC (ENSMLUG00000014156) #20	EFR3B (ENSMLUG00000014149) #21	DNAJC27 (ENSMLUG00000014143) #22	ADCY3 (ENSMLUG00000014135) #24	CENPO (ENSMLUG00000014129) #25	PTRHD1 (ENSMLUG00000014127) #26	NCOA1 (ENSMLUG00000014119) #27	ITSN2 (ENSMLUG00000002494) #28	FAM228B (ENSMLUG00000029485) #30	TP53I3 (ENSMLUG00000002480) #32	SF3B6 (ENSMLUG00000002473) #33	ENSMLUG00000030564 #34	WDCP (ENSMLUG00000013485) #35	ENSMLUG00000030749	ENSMLUG00000013466 #36	UBXN2A (ENSMLUG00000015640) #37	ATAD2B (ENSMLUG00000004476)	KLHL29 (ENSMLUG00000004470)
Greater horseshoe bat	MODERN SPECIES	4	OTOF (ENSRFEG00010015369)	DRC1 (ENSRFEG00010015514) #7	SELENOI (ENSRFEG00010015540) #8	ADGRF3 (ENSRFEG00010015582) #9	HADHB (ENSRFEG00010015789) #10	HADHA (ENSRFEG00010015960) #12	GAREM2 (ENSRFEG00010016065) #13	RAB10 (ENSRFEG00010016112) #14	KIF3C (ENSRFEG00010016154) #15	ASXL2 (ENSRFEG00010016207) #16	ENSRFEG00010016277	ENSRFEG00010016372 #18	DNMT3A (ENSRFEG00010016679) #19	POMC (ENSRFEG00010016944) #20	EFR3B (ENSRFEG00010016983) #21	DNAJC27 (ENSRFEG00010017106) #22	ADCY3 (ENSRFEG00010017185) #24	CENPO (ENSRFEG00010017262) #25	PTRHD1 (ENSRFEG00010017391) #26	NCOA1 (ENSRFEG00010017430) #27	ENSRFEG00010017543	ITSN2 (ENSRFEG00010017613) #28	FAM228A (ENSRFEG00010017718) #29	FAM228B (ENSRFEG00010017803) #30	ENSRFEG00010017885 #31	TP53I3 (ENSRFEG00010017946) #32	SF3B6 (ENSRFEG00010018003) #33	FKBP1B (ENSRFEG00010018043) #34	WDCP (ENSRFEG00010018155) #35	MFSD2B (ENSRFEG00010005251) #36	UBXN2A (ENSRFEG00010005270) #37
Atlantogenata	ANCESTRAL SPECIES	14	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00940000164632.b	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Xenarthra	ANCESTRAL SPECIES	1184																ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26
Armadillo	MODERN SPECIES	3050																DNAJC27 (ENSDNOG00000040043) #22	ADCY3 (ENSDNOG00000009972) #24	CENPO (ENSDNOG00000009960) #25	PTRHD1 (ENSDNOG00000043646) #26	ENSDNOG00000037706	ENSDNOG00000032740
Afrotheria	ANCESTRAL SPECIES	26	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00940000164632.b	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Tenrec	MODERN SPECIES	1614																DNAJC27 (ENSETEG00000006331) #22
Afrotheria_a	ANCESTRAL SPECIES	26	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000155936.b #28	ENSGT00940000164632.b	ENSGT00530000064185.b #29	ENSGT00530000064185.a #30	ENSGT00390000017067 #31	ENSGT00940000161217 #32	ENSGT00390000005908 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #35	ENSGT00390000005318.b.b.a #36	ENSGT00520000055567.a.b #37
Elephant	MODERN SPECIES	197	OTOF (ENSLAFG00000012736)	DRC1 (ENSLAFG00000001893) #7	ENSLAFG00000020893 #8	ADGRF3 (ENSLAFG00000005262) #9	HADHB (ENSLAFG00000008375) #10	HADHA (ENSLAFG00000002731) #12	GAREM2 (ENSLAFG00000002730) #13	RAB10 (ENSLAFG00000027391) #14	ENSLAFG00000030378	KIF3C (ENSLAFG00000004381) #15	ASXL2 (ENSLAFG00000002035) #16	ENSLAFG00000013179 #18	DNMT3A (ENSLAFG00000013263) #19	POMC (ENSLAFG00000031034) #20	EFR3B (ENSLAFG00000013258) #21	DNAJC27 (ENSLAFG00000002742) #22	ADCY3 (ENSLAFG00000014458) #24	CENPO (ENSLAFG00000014455) #25	PTRHD1 (ENSLAFG00000014453) #26	NCOA1 (ENSLAFG00000014442) #27	ITSN2 (ENSLAFG00000000620) #28	ENSLAFG00000032314	ENSLAFG00000000618 #29	FAM228B (ENSLAFG00000020782) #30	PFN4 (ENSLAFG00000025557) #31	TP53I3 (ENSLAFG00000017221) #32	SF3B6 (ENSLAFG00000029423) #33	FKBP1B (ENSLAFG00000005196) #34	WDCP (ENSLAFG00000017499) #35	MFSD2B (ENSLAFG00000023340) #36	UBXN2A (ENSLAFG00000017493) #37
Hyrax	MODERN SPECIES	6335																DNAJC27 (ENSPCAG00000007700) #22	ADCY3 (ENSPCAG00000007573) #24	CENPO (ENSPCAG00000007545) #25	PTRHD1 (ENSPCAG00000007535) #26
Marsupialia	ANCESTRAL SPECIES	15	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT01030000234597.a.b.a	ENSGT00940000160868	ENSGT00940000157269.a.a	ENSGT00940000158299	ENSGT00940000158614	ENSGT00510000049722	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598	ENSGT00720000108839
Opossum	MODERN SPECIES		OTOF (ENSMODG00000015788)	DRC1 (ENSMODG00000015797) #7	SELENOI (ENSMODG00000015800) #8	ADGRF3 (ENSMODG00000015803) #9	HADHB (ENSMODG00000015809) #10	HADHA (ENSMODG00000015815) #12	GAREM2 (ENSMODG00000015817) #13	RAB10 (ENSMODG00000015821) #14	KIF3C (ENSMODG00000015824) #15	ASXL2 (ENSMODG00000015832) #16	ENSMODG00000015846 #18	DNMT3A (ENSMODG00000015850) #19	POMC (ENSMODG00000015853) #20	EFR3B (ENSMODG00000015857) #21	ENSMODG00000051458	DNAJC27 (ENSMODG00000015869) #22	ADCY3 (ENSMODG00000015887) #24	CENPO (ENSMODG00000015893) #25	PTRHD1 (ENSMODG00000015895) #26	ENSMODG00000023230	NCOA1 (ENSMODG00000015907) #27	STMN4 (ENSMODG00000015911)	TRIM35 (ENSMODG00000015914)	PTK2B (ENSMODG00000015932)	CHRNA2 (ENSMODG00000015940)	ENSMODG00000015951	EPHX2 (ENSMODG00000015948)	ENSMODG00000049961	ENSMODG00000015957	ENSMODG00000015960	SCARA3 (ENSMODG00000015965)
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT01030000234597.a.b.a	ENSGT00940000160868	ENSGT00940000157269.a.a	ENSGT00940000158299	ENSGT00940000158614.e	ENSGT00510000049722	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598	ENSGT00720000108839
Tasmanian devil	MODERN SPECIES	1	OTOF (ENSSHAG00000004180)	DRC1 (ENSSHAG00000003011) #7	SELENOI (ENSSHAG00000024053) #8	ADGRF3 (ENSSHAG00000014566) #9	HADHB (ENSSHAG00000014373) #10	HADHA (ENSSHAG00000014112) #12	GAREM2 (ENSSHAG00000021473) #13	RAB10 (ENSSHAG00000032249) #14	ENSSHAG00000030526	KIF3C (ENSSHAG00000020830) #15	ASXL2 (ENSSHAG00000012066) #16	ENSSHAG00000009563 #18	DNMT3A (ENSSHAG00000007509) #19	ENSSHAG00000024476 #20	EFR3B (ENSSHAG00000002481) #21	DNAJC27 (ENSSHAG00000024931) #22	ADCY3 (ENSSHAG00000006048) #24	CENPO (ENSSHAG00000005861) #25	PTRHD1 (ENSSHAG00000005774) #26	ENSSHAG00000003234 #27	ENSSHAG00000007155	ENSSHAG00000023575	PTK2B (ENSSHAG00000029715)	CHRNA2 (ENSSHAG00000020533)	ENSSHAG00000002604	ENSSHAG00000022526	ENSSHAG00000006234	CLU (ENSSHAG00000028360)	SCARA3 (ENSSHAG00000018558)	CCDC25 (ENSSHAG00000018434)	ESCO2 (ENSSHAG00000018411)
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT01030000234597.a.b.a	ENSGT00940000160868	ENSGT00940000157269.a.a	ENSGT00940000158299	ENSGT00940000158614.e	ENSGT00510000049722	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598	ENSGT00720000108839
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00950000183117.b #8	ENSGT00940000161541 #9	ENSGT01030000234626.A.b #10	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #15	ENSGT00520000055578.a.b #16	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT01030000234597.a.b.a	ENSGT00940000160868	ENSGT00940000157269.a.a	ENSGT00940000158299	ENSGT00940000158614.e	ENSGT00510000049722	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598	ENSGT00720000108839
Common wonbat	MODERN SPECIES	574	SELENOI (ENSVURG00010000464) #8	ENSVURG00010000497 #9	HADHB (ENSVURG00010000535) #10	HADHA (ENSVURG00010000555) #12	GAREM2 (ENSVURG00010000581) #13	RAB10 (ENSVURG00010000601) #14	KIF3C (ENSVURG00010000616) #15	ENSVURG00010000654	ASXL2 (ENSVURG00010000667) #16	ENSVURG00010000697	ENSVURG00010000721 #18	DNMT3A (ENSVURG00010000794) #19	ENSVURG00010000869	ENSVURG00010000874 #20	EFR3B (ENSVURG00010000919) #21	DNAJC27 (ENSVURG00010000971) #22	ADCY3 (ENSVURG00010000999) #24	CENPO (ENSVURG00010001066) #25	PTRHD1 (ENSVURG00010001076) #26	NCOA1 (ENSVURG00010001108) #27	STMN4 (ENSVURG00010001184)	TRIM35 (ENSVURG00010001232)
koala	MODERN SPECIES	15	DRC1 (ENSPCIG00000024414) #7	SELENOI (ENSPCIG00000024416) #8	ADGRF3 (ENSPCIG00000024418) #9	HADHB (ENSPCIG00000024419) #10	HADHA (ENSPCIG00000024420) #12	GAREM2 (ENSPCIG00000024425) #13	RAB10 (ENSPCIG00000024427) #14	KIF3C (ENSPCIG00000025229) #15	ASXL2 (ENSPCIG00000025232) #16	ENSPCIG00000025231	ENSPCIG00000025234 #18	ENSPCIG00000025235	DNMT3A (ENSPCIG00000025236) #19	ENSPCIG00000025237 #20	EFR3B (ENSPCIG00000025238) #21	DNAJC27 (ENSPCIG00000025239) #22	ADCY3 (ENSPCIG00000025240) #24	CENPO (ENSPCIG00000025241) #25	PTRHD1 (ENSPCIG00000025242) #26	NCOA1 (ENSPCIG00000025243) #27	STMN4 (ENSPCIG00000025244)	TRIM35 (ENSPCIG00000027513)	PTK2B (ENSPCIG00000009116)	CHRNA2 (ENSPCIG00000009140)	EPHX2 (ENSPCIG00000009228)	ENSPCIG00000009229	CLU (ENSPCIG00000009230)	SCARA3 (ENSPCIG00000035188)	CCDC25 (ENSPCIG00000009276)	ENSPCIG00000033186	ESCO2 (ENSPCIG00000033776)
Wallaby	MODERN SPECIES	39																DNAJC27 (ENSMEUG00000014889) #22
Platypus	MODERN SPECIES	85								EPHX2 (ENSOANG00000010887)	CHRNA2 (ENSOANG00000041498)	PTK2B (ENSOANG00000007152)	TRIM35 (ENSOANG00000011269)	ENSOANG00000011270	ENSOANG00000050130	ENSOANG00000041348 #20	EFR3B (ENSOANG00000043503) #21	DNAJC27 (ENSOANG00000050168) #22	ENSOANG00000050218 #24	ENSOANG00000031519 #24	ENSOANG00000036561 #25	PTRHD1 (ENSOANG00000043793) #26	NCOA1 (ENSOANG00000004546) #27	ENSOANG00000049379	ENSOANG00000049370	ELP3 (ENSOANG00000046183)	FBXO16 (ENSOANG00000005008)	FZD3 (ENSOANG00000006312)	EXTL3 (ENSOANG00000051018)	INTS9 (ENSOANG00000010536)	HMBOX1 (ENSOANG00000050207)	KIF13B (ENSOANG00000009006)	ENSOANG00000014236
Sauria	ANCESTRAL SPECIES	1	ENSGT00390000004380	ENSGT00950000185082	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823
Lepidosauria	ANCESTRAL SPECIES	85							ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823	ENSGT00940000156020
Episquamata	ANCESTRAL SPECIES		ENSGT00940000159864	ENSGT00940000159097.c	ENSGT00390000014037	ENSGT00940000157818	ENSGT01070000253766.C	ENSGT00450000040279	ENSGT00940000161092	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000159097.c	ENSGT00390000014037	ENSGT00940000157818	ENSGT01070000253766.C	ENSGT00450000040279	ENSGT00940000161092	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020	ENSGT00940000165219	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00940000162770.o	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a
Elapidae	ANCESTRAL SPECIES		ENSGT00390000014037	ENSGT00940000157818	ENSGT01040000240952.B	ENSGT01070000253766.C	ENSGT00450000040279	ENSGT00940000161092	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020	ENSGT00940000165219	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00390000012138.a.a.e.a	ENSGT00940000157136	ENSGT01100000263521.a.a.a.b.a.b.a.c.b	ENSGT00940000162770.o	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299
Elapidae_a	ANCESTRAL SPECIES	59	ENSGT00940000159864	ENSGT00940000159097.c	ENSGT00390000014037	ENSGT00940000157818	ENSGT01040000240952.B	ENSGT01070000253766.C	ENSGT00450000040279	ENSGT00940000161092	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00390000012138.a.a.e.a	ENSGT00940000157136	ENSGT01100000263521.a.a.a.b.a.b.a.c.b	ENSGT00940000162770.o	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299
Acanthophiinae	ANCESTRAL SPECIES	11	ENSGT00940000159864	ENSGT00940000159097.c	ENSGT00390000014037	ENSGT00940000157818	ENSGT01040000240952.B	ENSGT01070000253766.C	ENSGT00450000040279	ENSGT00940000161092	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00390000012138.a.a.e.a	ENSGT00940000157136	ENSGT01100000263521.a.a.a.b.a.b.a.c.b	ENSGT00940000162770.o	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299
Mainland tiger snake	MODERN SPECIES	38						XKR6 (ENSNSUG00000004807)	PINX1 (ENSNSUG00000004808)	SOX7 (ENSNSUG00000004810)	C8orf74 (ENSNSUG00000004811)	ENSNSUG00000004812	MSRA (ENSNSUG00000004826)	KIF13B (ENSNSUG00000004829)	HMBOX1 (ENSNSUG00000004831)	INTS9 (ENSNSUG00000004834)	EXTL3 (ENSNSUG00000004840)	DNAJC27 (ENSNSUG00000004841) #22	ADCY3 (ENSNSUG00000004843) #24	CENPO (ENSNSUG00000004845) #25	PTRHD1 (ENSNSUG00000004846) #26	NCOA1 (ENSNSUG00000004847) #27	ENSNSUG00000004932	ZNF395 (ENSNSUG00000004943)	ENSNSUG00000004945	ENSNSUG00000004946	ENSNSUG00000004947	ELP3 (ENSNSUG00000004953)	FZD3 (ENSNSUG00000004972)	FBXO16 (ENSNSUG00000004978)	ENSNSUG00000004979	EPHX2 (ENSNSUG00000004993)	CHRNA2 (ENSNSUG00000005137)
Eastern brown snake	MODERN SPECIES	80	FAM167A (ENSPTXG00000014379)	ENSPTXG00000014380	MTMR9 (ENSPTXG00000014381)	ENSPTXG00000014382	ENSPTXG00000014384	XKR6 (ENSPTXG00000014386)	PINX1 (ENSPTXG00000014387)	SOX7 (ENSPTXG00000014388)	C8orf74 (ENSPTXG00000014389)	ENSPTXG00000014391	ENSPTXG00000014392	KIF13B (ENSPTXG00000014397)	HMBOX1 (ENSPTXG00000014400)	INTS9 (ENSPTXG00000014401)	EXTL3 (ENSPTXG00000014403)	DNAJC27 (ENSPTXG00000014404) #22	ADCY3 (ENSPTXG00000014405) #24	CENPO (ENSPTXG00000015036) #25	PTRHD1 (ENSPTXG00000015040) #26	NCOA1 (ENSPTXG00000015051) #27	ENSPTXG00000015064	ZNF395 (ENSPTXG00000015067)	ENSPTXG00000015070	ENSPTXG00000015072	ELP3 (ENSPTXG00000015074)	FZD3 (ENSPTXG00000015075)	FBXO16 (ENSPTXG00000015076)	ENSPTXG00000015077	EPHX2 (ENSPTXG00000015079)	CHRNA2 (ENSPTXG00000015080)	PTK2B (ENSPTXG00000015131)
Blue-lipped sea krait	MODERN SPECIES	668																DNAJC27 (ENSLLTG00000000042) #22
Indian cobra	MODERN SPECIES		ENSNNAG00000001681	MTMR9 (ENSNNAG00000001664)	ENSNNAG00000001653	ENSNNAG00000001648	XKR6 (ENSNNAG00000001639)	PINX1 (ENSNNAG00000001629)	SOX7 (ENSNNAG00000001617)	C8orf74 (ENSNNAG00000001608)	ENSNNAG00000001598	ENSNNAG00000001583	ENSNNAG00000001566	KIF13B (ENSNNAG00000001310)	HMBOX1 (ENSNNAG00000001201)	INTS9 (ENSNNAG00000001173)	EXTL3 (ENSNNAG00000001162)	DNAJC27 (ENSNNAG00000001146) #22	ADCY3 (ENSNNAG00000001123) #24	CENPO (ENSNNAG00000001109) #25	PTRHD1 (ENSNNAG00000001090) #26	NCOA1 (ENSNNAG00000001015) #27	ENSNNAG00000000986	ENSNNAG00000000970	ZNF395 (ENSNNAG00000000935)	ENSNNAG00000000913	ELP3 (ENSNNAG00000000861)	FZD3 (ENSNNAG00000000829)	FBXO16 (ENSNNAG00000000819)	ENSNNAG00000000808	EPHX2 (ENSNNAG00000000770)	CHRNA2 (ENSNNAG00000000635)	PTK2B (ENSNNAG00000000522)
Lizard	MODERN SPECIES	947												ENSACAG00000036731	HMBOX1 (ENSACAG00000010160)	ENSACAG00000010181	EXTL3 (ENSACAG00000010228)	DNAJC27 (ENSACAG00000010248) #22	ENSACAG00000037909	ENSACAG00000035900	ADCY3 (ENSACAG00000014803) #24	CENPO (ENSACAG00000000595) #25	ENSACAG00000044723	NCOA1 (ENSACAG00000000619) #27	ENSACAG00000001786
Laterata	ANCESTRAL SPECIES	4	ENSGT00940000159097.d	ENSGT00940000159097.c	ENSGT00390000014037	ENSGT00940000157818	ENSGT01070000253766.C	ENSGT00450000040279	ENSGT00940000161092	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a
Common wall lizard	MODERN SPECIES	11	XKR6 (ENSPMRG00000000950)	ENSPMRG00000000966	ENSPMRG00000000979	SOX7 (ENSPMRG00000000997)	C8orf74 (ENSPMRG00000001012)	ENSPMRG00000001041	ENSPMRG00000001071	MSRA (ENSPMRG00000001087)	ENSPMRG00000001105	KIF13B (ENSPMRG00000001447)	ENSPMRG00000002307	HMBOX1 (ENSPMRG00000002332)	INTS9 (ENSPMRG00000002391)	EXTL3 (ENSPMRG00000002417)	ENSPMRG00000002425	DNAJC27 (ENSPMRG00000002434) #22	ADCY3 (ENSPMRG00000002451) #24	ENSPMRG00000002481	CENPO (ENSPMRG00000002488) #25	PTRHD1 (ENSPMRG00000002495) #26	NCOA1 (ENSPMRG00000002517) #27	ZNF395 (ENSPMRG00000002564)	PNOC (ENSPMRG00000002572)	ELP3 (ENSPMRG00000002594)	FZD3 (ENSPMRG00000002701)	FBXO16 (ENSPMRG00000002709)	ENSPMRG00000002723	EPHX2 (ENSPMRG00000002740)	CHRNA2 (ENSPMRG00000002766)	PTK2B (ENSPMRG00000002828)	STMN4 (ENSPMRG00000002911)
Argentine black and white tegu	MODERN SPECIES	68		ENSSMRG00000012248	ENSSMRG00000012249	MTMR9 (ENSSMRG00000012251)	XKR6 (ENSSMRG00000012264)	PINX1 (ENSSMRG00000012265)	SOX7 (ENSSMRG00000012266)	C8orf74 (ENSSMRG00000012270)	ENSSMRG00000012273	ENSSMRG00000012274	MSRA (ENSSMRG00000012276)	KIF13B (ENSSMRG00000012284)	HMBOX1 (ENSSMRG00000012288)	INTS9 (ENSSMRG00000012290)	EXTL3 (ENSSMRG00000012294)	DNAJC27 (ENSSMRG00000012297) #22	ADCY3 (ENSSMRG00000012310) #24	CENPO (ENSSMRG00000012311) #25	PTRHD1 (ENSSMRG00000012312) #26	NCOA1 (ENSSMRG00000012318) #27	ZNF395 (ENSSMRG00000012322)	ENSSMRG00000012332	ELP3 (ENSSMRG00000012333)	FZD3 (ENSSMRG00000012335)	FBXO16 (ENSSMRG00000012336)	ENSSMRG00000012337	EPHX2 (ENSSMRG00000012338)	CHRNA2 (ENSSMRG00000012342)	PTK2B (ENSSMRG00000012343)	TRIM35 (ENSSMRG00000012972)	STMN4 (ENSSMRG00000012973)
tuatara	MODERN SPECIES	1661																DNAJC27 (ENSSPUG00000006583) #22
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00390000004380	ENSGT00950000185082	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000165219
Testudinoidea	ANCESTRAL SPECIES	12	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00940000162770.o	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500
Emydidae	ANCESTRAL SPECIES	62								ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00940000162770.o	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500
Three-toed box turtle	MODERN SPECIES	103										CHRNA2 (ENSTMTG00000009578)	PTK2B (ENSTMTG00000009616)	TRIM35 (ENSTMTG00000009732)	STMN4 (ENSTMTG00000009753)	POMC (ENSTMTG00000009765) #20	EFR3B (ENSTMTG00000009799) #21	DNAJC27 (ENSTMTG00000009996) #22	ADCY3 (ENSTMTG00000010110) #24	CENPO (ENSTMTG00000011356) #25	PTRHD1 (ENSTMTG00000011426) #26	NCOA1 (ENSTMTG00000011440) #27	ENSTMTG00000011528	ZNF395 (ENSTMTG00000011534)	ENSTMTG00000011561	ENSTMTG00000011575	ENSTMTG00000011582	ELP3 (ENSTMTG00000011600)	FBXO16 (ENSTMTG00000011630)	FZD3 (ENSTMTG00000011652)	EXTL3 (ENSTMTG00000011671)	INTS9 (ENSTMTG00000011682)	HMBOX1 (ENSTMTG00000011720)
painted turtle	MODERN SPECIES	873							ENSCPBG00000022327	ENSCPBG00000022322	CHRNA2 (ENSCPBG00000022315)	ENSCPBG00000022313	PTK2B (ENSCPBG00000022304)	TRIM35 (ENSCPBG00000022297)	STMN4 (ENSCPBG00000022294)	POMC (ENSCPBG00000022290) #20	EFR3B (ENSCPBG00000022285) #21	DNAJC27 (ENSCPBG00000022284) #22	ADCY3 (ENSCPBG00000022281) #24	CENPO (ENSCPBG00000022278) #25	PTRHD1 (ENSCPBG00000022276) #26	NCOA1 (ENSCPBG00000022268) #27	ZNF395 (ENSCPBG00000022254)	ENSCPBG00000022249	PNOC (ENSCPBG00000022245)	ENSCPBG00000022243	ELP3 (ENSCPBG00000022241)
Testudinidae	ANCESTRAL SPECIES	44	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00510000049722	ENSGT00940000158614.c	ENSGT00940000158614.d	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00940000162770.o	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500
Abingdon island giant tortoise	MODERN SPECIES	1525										CHRNA2 (ENSCABG00000015730)	PTK2B (ENSCABG00000014874)	TRIM35 (ENSCABG00000014837)	STMN4 (ENSCABG00000014815)	POMC (ENSCABG00000014812) #20	EFR3B (ENSCABG00000014787) #21	DNAJC27 (ENSCABG00000014785) #22	ADCY3 (ENSCABG00000014781) #24	CENPO (ENSCABG00000014779) #25	PTRHD1 (ENSCABG00000014778) #26	NCOA1 (ENSCABG00000014776) #27	ZNF395 (ENSCABG00000014771)	ENSCABG00000014770	ENSCABG00000014769
Goode s thornscrub tortoise	MODERN SPECIES	17	CLU (ENSGEVG00005008738)	SCARA3 (ENSGEVG00005008756)	CCDC25 (ENSGEVG00005008803)	ESCO2 (ENSGEVG00005008858)	PBK (ENSGEVG00005008894)	SCARA5 (ENSGEVG00005008955)	ENSGEVG00005009192	ENSGEVG00005009312	ENSGEVG00005009424	CHRNA2 (ENSGEVG00005009506)	PTK2B (ENSGEVG00005009625)	TRIM35 (ENSGEVG00005009862)	STMN4 (ENSGEVG00005004316)	POMC (ENSGEVG00005004412) #20	EFR3B (ENSGEVG00005004445) #21	DNAJC27 (ENSGEVG00005004577) #22	ADCY3 (ENSGEVG00005004679) #24	CENPO (ENSGEVG00005004917) #25	PTRHD1 (ENSGEVG00005004942) #26	NCOA1 (ENSGEVG00005004972) #27	ENSGEVG00005005032	ENSGEVG00005005060	ZNF395 (ENSGEVG00005005081)	ENSGEVG00005005109	ENSGEVG00005005155	ENSGEVG00005005263	ELP3 (ENSGEVG00005005286)	ENSGEVG00005005318	FBXO16 (ENSGEVG00005005341)	FZD3 (ENSGEVG00005005362)	EXTL3 (ENSGEVG00005005381)
Chinese turtle	MODERN SPECIES	596							EPHX2 (ENSPSIG00000012781)	ENSPSIG00000001059	CHRNA2 (ENSPSIG00000012597)	PTK2B (ENSPSIG00000012087)	TRIM35 (ENSPSIG00000011967)	STMN4 (ENSPSIG00000011792)	ENSPSIG00000011583	POMC (ENSPSIG00000011544) #20	EFR3B (ENSPSIG00000010224) #21	DNAJC27 (ENSPSIG00000009930) #22	ADCY3 (ENSPSIG00000009379) #24	CENPO (ENSPSIG00000009215) #25	NCOA1 (ENSPSIG00000007514) #27	ZNF395 (ENSPSIG00000006850)	ENSPSIG00000018272	ENSPSIG00000018269	FBXO16 (ENSPSIG00000018267)	FZD3 (ENSPSIG00000018263)	ELP3 (ENSPSIG00000018220)	EXTL3 (ENSPSIG00000001042)
Archosauria	ANCESTRAL SPECIES	3	ENSGT00390000004380	ENSGT00950000185082	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823
Australian saltwater crocodile	MODERN SPECIES	38	CCDC25 (ENSCPRG00005003117)	SCARA3 (ENSCPRG00005003111)	CLU (ENSCPRG00005003108)	SLC35F6 (ENSCPRG00005003101)	KCNK3 (ENSCPRG00005003098)	CIB4 (ENSCPRG00005003088)	FAM166C (ENSCPRG00005003082)	OTOF (ENSCPRG00005002907)	DRC1 (ENSCPRG00005002888) #7	ENSCPRG00005002882	ENSCPRG00005002876	ENSCPRG00005002868	STMN4 (ENSCPRG00005002849)	POMC (ENSCPRG00005002840) #20	EFR3B (ENSCPRG00005002762) #21	DNAJC27 (ENSCPRG00005002735) #22	CENPO (ENSCPRG00005002732) #25	ADCY3 (ENSCPRG00005002712) #24	NCOA1 (ENSCPRG00005002688) #27	ENSCPRG00005002638	ELP3 (ENSCPRG00005002580)	FBXO16 (ENSCPRG00005002562)	FZD3 (ENSCPRG00005002557)	EXTL3 (ENSCPRG00005002544)	INTS9 (ENSCPRG00005002518)	HMBOX1 (ENSCPRG00005002508)	KIF13B (ENSCPRG00005002467)	MSRA (ENSCPRG00005002450)	ENSCPRG00005002443	ENSCPRG00005002438	C8orf74 (ENSCPRG00005002435)
Aves	ANCESTRAL SPECIES	38	ENSGT00390000004380	ENSGT00950000185082	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823
African ostrich	MODERN SPECIES	218																DNAJC27 (ENSSCUG00000003834) #22	ADCY3 (ENSSCUG00000003837) #24	CENPO (ENSSCUG00000003838) #25	NCOA1 (ENSSCUG00000003841) #27	ENSSCUG00000003847
Neognathae	ANCESTRAL SPECIES	2	ENSGT00950000185082	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a.d	ENSGT00940000157269.a.a.c.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000158598	ENSGT00390000004380	ENSGT00940000158238	ENSGT01100000263560.b.b	ENSGT00530000063668.B	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823
Anatidae	ANCESTRAL SPECIES										ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000160868.b	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823
Pink-footed goose	MODERN SPECIES	343								ENSABRG00000018976	OTOF (ENSABRG00000019033)	ENSABRG00000019345	TRIM35 (ENSABRG00000019350)	STMN4 (ENSABRG00000019352)	ENSABRG00000019356	POMC (ENSABRG00000019361) #20	EFR3B (ENSABRG00000019368) #21	DNAJC27 (ENSABRG00000019378) #22	ADCY3 (ENSABRG00000019381) #24	CENPO (ENSABRG00000019387) #25	PTRHD1 (ENSABRG00000019389) #26	NCOA1 (ENSABRG00000019391) #27
Duck	MODERN SPECIES	21	ASXL2 (ENSAPLG00000005877) #16	RAB10 (ENSAPLG00000018031) #14	GAREM2 (ENSAPLG00000025887) #13	HADHA (ENSAPLG00000003803) #12	HADHB (ENSAPLG00000003436) #10	ENSAPLG00000003434	SELENOI (ENSAPLG00000009483) #8	ENSAPLG00000012254	ENSAPLG00000012641	FAM166C (ENSAPLG00000010916)	ENSAPLG00000021729	ENSAPLG00000017924	ENSAPLG00000012374	EFR3B (ENSAPLG00000012384) #21	ENSAPLG00000022349	DNAJC27 (ENSAPLG00000012805) #22	ADCY3 (ENSAPLG00000013028) #24	CENPO (ENSAPLG00000013501) #25	PTRHD1 (ENSAPLG00000017657) #26	NCOA1 (ENSAPLG00000013551) #27	ZNF395 (ENSAPLG00000021341)	PNOC (ENSAPLG00000029372)	ENSAPLG00000014279	ELP3 (ENSAPLG00000014280)	FBXO16 (ENSAPLG00000014547)	FZD3 (ENSAPLG00000014664)	EXTL3 (ENSAPLG00000006510)	INTS9 (ENSAPLG00000006167)	HMBOX1 (ENSAPLG00000006003)	KIF13B (ENSAPLG00000005429)	ENSAPLG00000026335
Phasianidae	ANCESTRAL SPECIES	28	ENSGT00940000158598	ENSGT00390000004380	ENSGT00940000158238	ENSGT01100000263560.b.b	ENSGT00530000063668.B	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823
Japanese quail	MODERN SPECIES	21	SCARA5 (ENSCJPG00005012978)	PBK (ENSCJPG00005012979)	ESCO2 (ENSCJPG00005012980)	CCDC25 (ENSCJPG00005012981)	SCARA3 (ENSCJPG00005012982)	ENSCJPG00005012983	CLU (ENSCJPG00005012984)	SLC35F6 (ENSCJPG00005012985)	KCNK3 (ENSCJPG00005012986)	OTOF (ENSCJPG00005012987)	DRC1 (ENSCJPG00005012988) #7	TRIM35 (ENSCJPG00005012989)	STMN4 (ENSCJPG00005012990)	POMC (ENSCJPG00005012992) #20	EFR3B (ENSCJPG00005012993) #21	DNAJC27 (ENSCJPG00005012994) #22	ADCY3 (ENSCJPG00005012995) #24	CENPO (ENSCJPG00005012996) #25	PTRHD1 (ENSCJPG00005012997) #26	NCOA1 (ENSCJPG00005012998) #27	ZNF395 (ENSCJPG00005013001)	ENSCJPG00005013002	ENSCJPG00005013003	ELP3 (ENSCJPG00005013004)	FBXO16 (ENSCJPG00005013006)	FZD3 (ENSCJPG00005013007)	EXTL3 (ENSCJPG00005013009)	INTS9 (ENSCJPG00005013010)	HMBOX1 (ENSCJPG00005013011)	KIF13B (ENSCJPG00005013012)	MSRA (ENSCJPG00005013018)
Phasianidae_b	ANCESTRAL SPECIES	29	ENSGT00940000158598	ENSGT00390000004380	ENSGT00940000158238	ENSGT01100000263560.b.b	ENSGT00530000063668.B	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A #7	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823
Turkey	MODERN SPECIES	11	ESCO2 (ENSMGAG00000014122)	CCDC25 (ENSMGAG00000014123)	SCARA3 (ENSMGAG00000014125)	ENSMGAG00000022703	CLU (ENSMGAG00000014126)	SLC35F6 (ENSMGAG00000014128)	KCNK3 (ENSMGAG00000017098)	FAM166C (ENSMGAG00000020358)	OTOF (ENSMGAG00000014133)	ENSMGAG00000014136 #7	ENSMGAG00000014139	ENSMGAG00000017031	ENSMGAG00000014141	POMC (ENSMGAG00000014142) #20	EFR3B (ENSMGAG00000014143) #21	DNAJC27 (ENSMGAG00000014146) #22	ADCY3 (ENSMGAG00000014149) #24	CENPO (ENSMGAG00000014151) #25	ENSMGAG00000022096	NCOA1 (ENSMGAG00000014153) #27	ZNF395 (ENSMGAG00000014155)	ENSMGAG00000014158	ENSMGAG00000014159	ELP3 (ENSMGAG00000014178)	FBXO16 (ENSMGAG00000014179)	FZD3 (ENSMGAG00000014180)	EXTL3 (ENSMGAG00000014181)	INTS9 (ENSMGAG00000014182)	HMBOX1 (ENSMGAG00000014184)	KIF13B (ENSMGAG00000014187)	ENSMGAG00000022001
Chicken	MODERN SPECIES	22	CCDC25 (ENSGALG00010010284)	SCARA3 (ENSGALG00010010337)	ENSGALG00010010317	CLU (ENSGALG00010010366)	SLC35F6 (ENSGALG00010010379)	ENSGALG00010010387	KCNK3 (ENSGALG00010010390)	FAM166C (ENSGALG00010010400)	OTOF (ENSGALG00010010417)	DRC1 (ENSGALG00010010453) #7	TRIM35 (ENSGALG00010010473)	STMN4 (ENSGALG00010010517)	ENSGALG00010010537	POMC (ENSGALG00010010556) #20	EFR3B (ENSGALG00010010663) #21	DNAJC27 (ENSGALG00010010699) #22	ADCY3 (ENSGALG00010010724) #24	CENPO (ENSGALG00010010766) #25	PTRHD1 (ENSGALG00010010805) #26	ENSGALG00010010759	NCOA1 (ENSGALG00010010826) #27	ZNF395 (ENSGALG00010010843)	PNOC (ENSGALG00010010851)	ENSGALG00010010859	ELP3 (ENSGALG00010010880)	FBXO16 (ENSGALG00010010925)	FZD3 (ENSGALG00010010949)	EXTL3 (ENSGALG00010010953)	INTS9 (ENSGALG00010010964)	HMBOX1 (ENSGALG00010011028)	KIF13B (ENSGALG00010011061)
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00390000004380	ENSGT00950000185082	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a.d	ENSGT00940000153804.A #7	ENSGT00940000157269.a.a.c.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823
Neognathae_c	ANCESTRAL SPECIES	10	ENSGT00940000158238	ENSGT00390000004380	ENSGT00950000185082	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a.d	ENSGT00940000153804.A #7	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823
Golden eagle	MODERN SPECIES	6	ENSACCG00020006081	SCARA3 (ENSACCG00020006092)	CCDC25 (ENSACCG00020006104)	ESCO2 (ENSACCG00020006123)	PBK (ENSACCG00020006136)	SCARA5 (ENSACCG00020006154)	ENSACCG00020006171	EPHX2 (ENSACCG00020006227)	CHRNA2 (ENSACCG00020006240)	PTK2B (ENSACCG00020006294)	DRC1 (ENSACCG00020006349) #7	TRIM35 (ENSACCG00020006372)	STMN4 (ENSACCG00020006389)	POMC (ENSACCG00020006401) #20	EFR3B (ENSACCG00020006420) #21	DNAJC27 (ENSACCG00020006474) #22	ADCY3 (ENSACCG00020006490) #24	CENPO (ENSACCG00020006512) #25	PTRHD1 (ENSACCG00020006527) #26	NCOA1 (ENSACCG00020006560) #27	ZNF395 (ENSACCG00020006598)	ENSACCG00020006612	ENSACCG00020006625	ELP3 (ENSACCG00020006644)	FBXO16 (ENSACCG00020006672)	FZD3 (ENSACCG00020006686)	EXTL3 (ENSACCG00020006699)	INTS9 (ENSACCG00020006726)	HMBOX1 (ENSACCG00020006754)	KIF13B (ENSACCG00020007679)	MSRA (ENSACCG00020008321)
Kakapo	MODERN SPECIES	23	SCARA3 (ENSSHBG00005011496)	CCDC25 (ENSSHBG00005011479)	ENSSHBG00005011457	ENSSHBG00005011440	PBK (ENSSHBG00005011416)	SCARA5 (ENSSHBG00005011297)	ENSSHBG00005011243	EPHX2 (ENSSHBG00005011215)	CHRNA2 (ENSSHBG00005011161)	PTK2B (ENSSHBG00005010925)	DRC1 (ENSSHBG00005010810) #7	TRIM35 (ENSSHBG00005010787)	STMN4 (ENSSHBG00005010745)	POMC (ENSSHBG00005010726) #20	EFR3B (ENSSHBG00005010666) #21	DNAJC27 (ENSSHBG00005010616) #22	ADCY3 (ENSSHBG00005010549) #24	CENPO (ENSSHBG00005010503) #25	PTRHD1 (ENSSHBG00005010471) #26	NCOA1 (ENSSHBG00005010354) #27	ENSSHBG00005010296	ZNF395 (ENSSHBG00005010272)	PNOC (ENSSHBG00005010253)	ENSSHBG00005010236	ELP3 (ENSSHBG00005010202)	FBXO16 (ENSSHBG00005000483)	FZD3 (ENSSHBG00005000478)	EXTL3 (ENSSHBG00005015457)	INTS9 (ENSSHBG00005013769)	HMBOX1 (ENSSHBG00005013658)	ENSSHBG00005013632
Passeriformes	ANCESTRAL SPECIES	157																ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24
Passeriformes_d	ANCESTRAL SPECIES	119																ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016811 #20
Flycatcher	MODERN SPECIES	450																ENSFALG00000026826 #22
Passeriformes_g	ANCESTRAL SPECIES	128																ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016811 #20
Passeroidea	ANCESTRAL SPECIES	135																ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016811 #20
Zebra finch	MODERN SPECIES	23												ENSTGUG00000026432	ENSTGUG00000027387	ENSTGUG00000015169 #26	ENSTGUG00000022216 #25	ENSTGUG00000023099 #22	ADCY3 (ENSTGUG00000023950) #24	POMC (ENSTGUG00000017017) #20	ENSTGUG00000024397	ENSTGUG00000029103	ENSTGUG00000021674	ENSTGUG00000029589	ENSTGUG00000027945	ENSTGUG00000021787	DRC1 (ENSTGUG00000022350) #7	TRIM35 (ENSTGUG00000020309)	ENSTGUG00000026507	ENSTGUG00000028914	KCNK3 (ENSTGUG00000026168)	ENSTGUG00000023570	CLU (ENSTGUG00000028547)
Common canary	MODERN SPECIES	152																DNAJC27 (ENSSCAG00000016672) #22	POMC (ENSSCAG00000016670) #20
Anura	ANCESTRAL SPECIES	34	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00510000049722.b	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT01030000234597.a.b.a	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26	ENSGT00950000183021.b #27	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00940000166178	ENSGT00390000013141	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000003823
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000008956	ESCO2 (ENSLLEG00000008998)	PBK (ENSLLEG00000009108)	ENSLLEG00000009160	SCARA5 (ENSLLEG00000009205)	ENSLLEG00000009335	EPHX2 (ENSLLEG00000009541)	ENSLLEG00000009799	CHRNA2 (ENSLLEG00000009846)	ENSLLEG00000009998	PTK2B (ENSLLEG00000010058)	STMN4 (ENSLLEG00000010881)	POMC (ENSLLEG00000011034) #20	EFR3B (ENSLLEG00000011133) #21	ENSLLEG00000012442	DNAJC27 (ENSLLEG00000012462) #22	ADCY3 (ENSLLEG00000012527) #24	CENPO (ENSLLEG00000012699) #25	PTRHD1 (ENSLLEG00000005116) #26	NCOA1 (ENSLLEG00000005168) #27	ENSLLEG00000005310	ZNF395 (ENSLLEG00000005337)	ENSLLEG00000005414	ENSLLEG00000005445	ENSLLEG00000005468	ELP3 (ENSLLEG00000005516)	ENSLLEG00000005683	ENSLLEG00000005697	FBXO16 (ENSLLEG00000005712)	FZD3 (ENSLLEG00000005780)	ENSLLEG00000005819
Frog	MODERN SPECIES	5	kif3c (ENSXETG00000024790) #15	asxl2 (ENSXETG00000003167) #16	ENSXETG00000044020	ENSXETG00000046509	ENSXETG00000044272	ENSXETG00000035690	ENSXETG00000039990	ENSXETG00000046510	ephx2 (ENSXETG00000017581)	chrna2 (ENSXETG00000017553)	ptk2b (ENSXETG00000017538)	stmn4 (ENSXETG00000017530)	ENSXETG00000030926	pomc (ENSXETG00000017532) #20	efr3b (ENSXETG00000017509) #21	DNAJC27 (ENSXETG00000021184) #22	dnajc27 (ENSXETG00000021179) #24	cenpo (ENSXETG00000044445) #25	ptrhd1 (ENSXETG00000045671) #26	ENSXETG00000048191	ENSXETG00000047353	ENSXETG00000046821	ncoa1 (ENSXETG00000021173) #27	ENSXETG00000047272	ENSXETG00000041111	ENSXETG00000043553	znf395 (ENSXETG00000021160)	pnoc (ENSXETG00000021158)	stk35 (ENSXETG00000021156)	ENSXETG00000044029	ENSXETG00000045461
Coelacanth	MODERN SPECIES	981											ENSLACG00000003904	ENSLACG00000009442	ENSLACG00000011131	POMC (ENSLACG00000011702) #20	EFR3B (ENSLACG00000011910) #21	DNAJC27 (ENSLACG00000012994) #22	ADCY3 (ENSLACG00000013327) #24
Actinopterygii	ANCESTRAL SPECIES	435												ENSGT00940000156557	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #24	ENSGT00390000016702 #25	ENSGT00500000044959 #26
Neopterygii	ANCESTRAL SPECIES	165	ENSGT00390000016034	ENSGT00940000158680	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000166224	ENSGT00940000156560	ENSGT00730000111187.a.b	ENSGT00940000156874	ENSGT00940000157082	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00940000156557	ENSGT00940000164041	ENSGT00390000016811 #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133 #22	ENSGT00940000166718
Osteoglossocephalai	ANCESTRAL SPECIES	170	ENSGT00940000165866	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h	ENSGT00940000156874	ENSGT00940000157082	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041	ENSGT00390000016811.g #20	ENSGT00390000002143.b.b #21	ENSGT00390000016811.h #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT01030000234555.a.b.f.b
Clupeocephala	ANCESTRAL SPECIES	276	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT00940000158687.b	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000158299.b	ENSGT00940000157269.a.a	ENSGT00940000160303.b	ENSGT00510000048137	ENSGT00940000162505.b	ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g #20	ENSGT00390000002143.b.b #21	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT01030000234555.a.b.f.b
Otomorpha	ANCESTRAL SPECIES	556														ENSGT00390000016811.g #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT01030000234555.a.b.f.b
Clupeiformes	ANCESTRAL SPECIES	330				ENSGT00390000000455.b	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00940000158680	ENSGT00940000166224	ENSGT00940000156560.g	ENSGT00730000111187.a.b	ENSGT00940000157082	ENSGT00940000154790.a.a.b.h	ENSGT00940000156557.g	ENSGT00940000164041.a	ENSGT00390000016811.g #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT01030000234555.a.b.f.b
Atlantic herring	MODERN SPECIES	5	alkal2b (ENSCHAG00000023252)	ENSCHAG00000023264	APOB (ENSCHAG00000023273)	ldah (ENSCHAG00000023320)	ENSCHAG00000023333	eva1a (ENSCHAG00000023442)	KCNK2 (ENSCHAG00000023446)	CENPF (ENSCHAG00000023466)	smyd2a (ENSCHAG00000023508)	prox1a (ENSCHAG00000023560)	snx9a (ENSCHAG00000023578)	ENSCHAG00000023593	pomca (ENSCHAG00000002347) #20	pomca (ENSCHAG00000002368) #20	EFR3B (ENSCHAG00000002516) #21	dnajc27 (ENSCHAG00000003658) #22	ENSCHAG00000003752	XDH (ENSCHAG00000006100)	ENSCHAG00000020307	LIN9 (ENSCHAG00000020338)	zgc:162964 (ENSCHAG00000020612)	ENSCHAG00000020618	ENSCHAG00000020621	ECT2L (ENSCHAG00000020628)	ccdc28a (ENSCHAG00000020778)	DYNC1H1 (ENSCHAG00000020827)	ENSCHAG00000022427	PPP2R5C (ENSCHAG00000022533)	ENSCHAG00000024427	ENSCHAG00000024429	DLK1 (ENSCHAG00000024432)
Denticle herring	MODERN SPECIES		KCNK2 (ENSDCDG00000001113)	ctsba (ENSDCDG00000001119)	XKR5 (ENSDCDG00000001122)	ENSDCDG00000001125	GDF7 (ENSDCDG00000001128)	ldah (ENSDCDG00000001132)	ENSDCDG00000001142	ENSDCDG00000001154	alkal2b (ENSDCDG00000001158)	SH3YL1 (ENSDCDG00000001161)	prox1a (ENSDCDG00000001164)	snx9a (ENSDCDG00000001172)	ENSDCDG00000001329	pomca (ENSDCDG00000001333) #20	EFR3B (ENSDCDG00000001346) #21	dnajc27 (ENSDCDG00000001390) #22	ENSDCDG00000001407	XDH (ENSDCDG00000001922)	ENSDCDG00000020977	zgc:162964 (ENSDCDG00000020980)	mthfd1b (ENSDCDG00000021011)	C14orf28 (ENSDCDG00000021875)	KLHL28 (ENSDCDG00000021876)	ENSDCDG00000021878	ENSDCDG00000021882	ENSDCDG00000021885	soul3 (ENSDCDG00000021889)	SLC25A29 (ENSDCDG00000021891)	SLC25A47 (ENSDCDG00000021893)	WARS1 (ENSDCDG00000021894)	WDR25 (ENSDCDG00000021896)
Otophysi	ANCESTRAL SPECIES	80	ENSGT00940000157612	ENSGT01090000260040.b.b.b.a.m.a.a	ENSGT00390000000455.b	ENSGT00940000154096.b.b.a	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00940000158680	ENSGT00940000166224	ENSGT00940000156560.g	ENSGT00730000111187.a.b	ENSGT00940000157082	ENSGT00940000154790.a.a.b.h	ENSGT00940000156557.g	ENSGT00940000164041.a	ENSGT00390000016811.g #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT01030000234667.b.f.a	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000162166	ENSGT01030000234626.B ##10	ENSGT00390000013931	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182843.a.a.a.a	ENSGT00940000158622	ENSGT00410000026259	ENSGT00390000003866.a.b.a
Characiphysae	ANCESTRAL SPECIES	4										ENSGT00940000158680	ENSGT00940000157082	ENSGT00940000154790.a.a.b.h	ENSGT00940000156557.g	ENSGT00940000164041.a	ENSGT00390000016811.g #20	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000154607.a	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182843.a.a.a.a	ENSGT00940000158622	ENSGT00410000026259	ENSGT00390000003866.a.b.a	ENSGT00940000168283	ENSGT00390000016904	ENSGT00530000063737.l.b	ENSGT00390000016577.b.a
Channel catfish	MODERN SPECIES	28	c9h14orf28 (ENSIPUG00000014548)	ENSIPUG00000014569	ENSIPUG00000014601	fancm (ENSIPUG00000014629)	soul3 (ENSIPUG00000014665)	slc25a29 (ENSIPUG00000014684)	slc25a47 (ENSIPUG00000014698)	wars (ENSIPUG00000014705)	wdr25 (ENSIPUG00000014762)	begain (ENSIPUG00000014802)	DLK1 (ENSIPUG00000014836)	ctsba (ENSIPUG00000014860)	smyd2a (ENSIPUG00000014969)	prox1 (ENSIPUG00000015051)	pomca (ENSIPUG00000015065) #20	dnajc27 (ENSIPUG00000015086) #22	xdh (ENSIPUG00000015176)	ENSIPUG00000015365	zgc:162964 (ENSIPUG00000015380)	ENSIPUG00000015398	ccdc28a (ENSIPUG00000015478)	snap23.1 (ENSIPUG00000015488)	RIN3 (ENSIPUG00000015511)	pth2 (ENSIPUG00000015545)	TMEM121 (ENSIPUG00000015552)	c9h14orf80 (ENSIPUG00000015561)	dnal1 (ENSIPUG00000015580)	cdk1 (ENSIPUG00000015647)	snap25b (ENSIPUG00000015696)	ahctf1 (ENSIPUG00000015717)	ENSIPUG00000015815
Characiphysae_b	ANCESTRAL SPECIES	20									ENSGT00940000158680	ENSGT00940000157082	ENSGT00940000154790.a.a.b.h	ENSGT00940000156557.g	ENSGT00940000164041.a	ENSGT00390000016811.g #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000154607.a	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182843.a.a.a.a	ENSGT00940000158622	ENSGT00410000026259	ENSGT00390000003866.a.b.a	ENSGT00940000168283	ENSGT00390000016904	ENSGT00530000063737.l.b	ENSGT00390000016577.b.a
Characoidei	ANCESTRAL SPECIES	208									ENSGT00940000158680	ENSGT00940000157082	ENSGT00940000154790.a.a.b.h	ENSGT00940000156557.g	ENSGT00940000164041.a	ENSGT00390000016811.g #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182843.a.a.a.a	ENSGT00940000158622	ENSGT00410000026259	ENSGT00390000003866.a.b.a	ENSGT00940000168283	ENSGT00390000016904	ENSGT00530000063737.l.b	ENSGT00390000016577.b.a	ENSGT00940000156087.a.a
Red-bellied piranha	MODERN SPECIES	145	npy4r (ENSPNAG00000024487)	samd8 (ENSPNAG00000024525)	ENSPNAG00000024578	ENSPNAG00000003892	add3b (ENSPNAG00000003897)	smndc1 (ENSPNAG00000025285)	ENSPNAG00000025303	gnrh3 (ENSPNAG00000025366)	ctsba (ENSPNAG00000005563)	smyd2a (ENSPNAG00000003923)	prox1a (ENSPNAG00000025475)	snx9a (ENSPNAG00000025507)	ENSPNAG00000025527	pomca (ENSPNAG00000025530) #20	EFR3B (ENSPNAG00000005499) #21	dnajc27 (ENSPNAG00000025619) #22	ENSPNAG00000005596	XDH (ENSPNAG00000025902)	ENSPNAG00000025927	LIN9 (ENSPNAG00000025955)	zgc:162964 (ENSPNAG00000026002)	ECT2L (ENSPNAG00000026027)	ccdc28a (ENSPNAG00000026052)	snap23.1 (ENSPNAG00000006548)	RIN3 (ENSPNAG00000026162)	pth2 (ENSPNAG00000004018)	TMEM121 (ENSPNAG00000026174)	ENSPNAG00000026188	ENSPNAG00000026199	dnal1 (ENSPNAG00000026275)	fut8a (ENSPNAG00000026320)
Mexicana tetra	MODERN SPECIES	24	itgb1bp1 (ENSAMXG00000029627)	ENSAMXG00000034522	asap2a (ENSAMXG00000017346)	MBOAT2 (ENSAMXG00000017362)	KIDINS220 (ENSAMXG00000017375)	id2a (ENSAMXG00000017387)	NHSL1 (ENSAMXG00000035826)	ENSAMXG00000033695	ENSAMXG00000008305	SH3YL1 (ENSAMXG00000040950)	alkal2b (ENSAMXG00000034620)	snx9a (ENSAMXG00000011891)	ENSAMXG00000011865	pomca (ENSAMXG00000011859) #20	EFR3B (ENSAMXG00000011856) #21	dnajc27 (ENSAMXG00000041488) #22	ENSAMXG00000011826	XDH (ENSAMXG00000011782)	zgc:162964 (ENSAMXG00000011772)	ENSAMXG00000011766	ccdc28a (ENSAMXG00000030205)	snap23.1 (ENSAMXG00000039971)	RIN3 (ENSAMXG00000011757)	pth2 (ENSAMXG00000011755)	TMEM121 (ENSAMXG00000025420)	ENSAMXG00000011754	dnal1 (ENSAMXG00000032331)	fut8a (ENSAMXG00000011744)	gphna (ENSAMXG00000011740)	pals1a (ENSAMXG00000011726)	prox1a (ENSAMXG00000011717)
Electric eel	MODERN SPECIES	354								TTC7B (ENSEEEG00000019431)	mrpl57 (ENSEEEG00000019432)	ctsba (ENSEEEG00000019435)	smyd2a (ENSEEEG00000019490)	prox1a (ENSEEEG00000019567)	snx9a (ENSEEEG00000019577)	pomca (ENSEEEG00000019801) #20	EFR3B (ENSEEEG00000019804) #21	dnajc27 (ENSEEEG00000019806) #22	XDH (ENSEEEG00000019961)	ENSEEEG00000023203	zgc:162964 (ENSEEEG00000023204)	zgc:162964 (ENSEEEG00000023205)	ENSEEEG00000023206	ccdc28a (ENSEEEG00000023207)	snap23.1 (ENSEEEG00000023209)	RIN3 (ENSEEEG00000023214)
Cyprinoidei	ANCESTRAL SPECIES	72	ENSGT00940000155982.e.a	ENSGT00940000157612	ENSGT01090000260040.b.b.b.a.m.a.a	ENSGT00390000000455.b	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00940000158680	ENSGT00940000166224	ENSGT00940000156560.g	ENSGT00730000111187.a.b.b	ENSGT00940000157082	ENSGT00940000154790.a.a.b.h	ENSGT00940000156557.g	ENSGT00940000164041.a	ENSGT00390000016811.g #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT01030000234667.b.f.a	ENSGT00530000063651.a	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182843.a.a.a.a.tb	ENSGT00950000182843.a.a.a.a.ub	ENSGT00940000158622	ENSGT00410000026259	ENSGT00390000003866.a.b.a	ENSGT00940000168283	ENSGT00390000016904	ENSGT00530000063737.l.b	ENSGT00390000016577.b.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	200	ENSGT00940000155982.e.a.b	ENSGT00940000157612.h	ENSGT01090000260040.b.b.b.a.m.a.a.a	ENSGT00390000000455.b.g	ENSGT00940000154096.b.b.a.h.a.b	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00940000158680.b	ENSGT00940000166224.b	ENSGT00940000156560.g.c	ENSGT00730000111187.a.b.b.a	ENSGT00940000157082.o	ENSGT00940000154790.a.a.b.h.a	ENSGT00940000156557.g.b	ENSGT00390000016811.g.c #20	ENSGT00390000002143.b.a.g.a #21	ENSGT00940000157133.a #22	ENSGT00940000166718.b	ENSGT00950000183114.a.a.h	ENSGT00530000063651.a.p.b	ENSGT00940000158839	ENSGT00500000044870.a.i	ENSGT00950000182843.a.a.a.a.tb.b	ENSGT00950000182843.a.a.a.a.ub.a.a	ENSGT00940000158622.e	ENSGT00410000026259.c	ENSGT00390000003866.a.b.a.a	ENSGT00940000168283.a	ENSGT00390000016904.g.b	ENSGT00530000063737.l.b.b	ENSGT00530000063737.k	ENSGT00390000016577.b.a.d
Goldfish	MODERN SPECIES	8	ENSCARG00000020858	DLGAP2 (ENSCARG00000020869)	cln8 (ENSCARG00000020886)	ENSCARG00000020893	eva1a (ENSCARG00000020908)	ENSCARG00000020915	ctsba (ENSCARG00000020956)	ENSCARG00000021238	KCNK2 (ENSCARG00000021240)	CENPF (ENSCARG00000021252)	smyd2a (ENSCARG00000021401)	prox1a (ENSCARG00000021416)	snx9a (ENSCARG00000021439)	pomca (ENSCARG00000021498) #20	EFR3B (ENSCARG00000021526) #21	dnajc27 (ENSCARG00000021643) #22	ENSCARG00000021654	ENSCARG00000021659	XDH (ENSCARG00000021943)	zgc:162964 (ENSCARG00000031594)	ECT2L (ENSCARG00000031614)	ccdc28a (ENSCARG00000031622)	snap23.1 (ENSCARG00000031628)	snap23.2 (ENSCARG00000031642)	RIN3 (ENSCARG00000031648)	pth2 (ENSCARG00000031669)	TMEM121 (ENSCARG00000031678)	ENSCARG00000031684	DNAL1 (ENSCARG00000031691)	fut8a (ENSCARG00000031718)	gphna (ENSCARG00000031847)
Cyprininae_a	ANCESTRAL SPECIES	186	ENSGT00940000155982.e.a.b	ENSGT00940000157612.h	ENSGT01090000260040.b.b.b.a.m.a.a.a	ENSGT00390000000455.b.g	ENSGT00940000154096.b.b.a.h.a.b	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00940000158680.b	ENSGT00940000166224.b	ENSGT00940000156560.g.c	ENSGT00730000111187.a.b.b.a	ENSGT00940000157082.o	ENSGT00940000154790.a.a.b.h.a	ENSGT00940000156557.g.b	ENSGT00390000016811.g.c #20	ENSGT00390000002143.b.a.g.a #21	ENSGT00940000157133.a #22	ENSGT00940000166718.b	ENSGT00950000183114.a.a.h	ENSGT00530000063651.a.p.b	ENSGT00940000158839	ENSGT00500000044870.a.i	ENSGT00950000182843.a.a.a.a.tb.b	ENSGT00950000182843.a.a.a.a.ub.a.a	ENSGT00940000158622.e	ENSGT00410000026259.c	ENSGT00390000003866.a.b.a.a	ENSGT00940000168283.a	ENSGT00390000016904.g.b	ENSGT00530000063737.l.b.b	ENSGT00390000016577.b.a.d	ENSGT00940000156087.a.a.a
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	157	grhl1 (ENSSGRG00000006530)	ywhaqb (ENSSGRG00000006616)	gcfc2 (ENSSGRG00000006635)	eva1a (ENSSGRG00000006639)	ENSSGRG00000006647	ctsba (ENSSGRG00000006701)	ENSSGRG00000008009	KCNK2 (ENSSGRG00000008010)	CENPF (ENSSGRG00000008011)	smyd2a (ENSSGRG00000008035)	prox1a (ENSSGRG00000008163)	snx9a (ENSSGRG00000008164)	ENSSGRG00000008172	pomca (ENSSGRG00000008174) #20	EFR3B (ENSSGRG00000008221) #21	dnajc27 (ENSSGRG00000009943) #22	ENSSGRG00000009944	XDH (ENSSGRG00000010165)	zgc:162964 (ENSSGRG00000021833)	ENSSGRG00000021841	ccdc28a (ENSSGRG00000021845)	snap23.1 (ENSSGRG00000021849)	snap23.2 (ENSSGRG00000021852)	RIN3 (ENSSGRG00000021859)	pth2 (ENSSGRG00000021961)	TMEM121 (ENSSGRG00000021963)	ENSSGRG00000021976	fut8a (ENSSGRG00000021985)	gphna (ENSSGRG00000022300)	pals1a (ENSSGRG00000023164)	cd226 (ENSSGRG00000023209)
Golden-line barbel	MODERN SPECIES	190	klf11b (ENSSGRG00000043202)	grhl1 (ENSSGRG00000043113)	ywhaqb (ENSSGRG00000043103)	gcfc2 (ENSSGRG00000043099)	eva1a (ENSSGRG00000043096)	ENSSGRG00000043095	ENSSGRG00000043092	KCNK2 (ENSSGRG00000043090)	ENSSGRG00000043086	ENSSGRG00000043085	smyd2a (ENSSGRG00000043065)	prox1a (ENSSGRG00000043063)	snx9a (ENSSGRG00000042431)	pomca (ENSSGRG00000042419) #20	EFR3B (ENSSGRG00000042418) #21	dnajc27 (ENSSGRG00000042406) #22	ENSSGRG00000042379	XDH (ENSSGRG00000042373)	zgc:162964 (ENSSGRG00000042371)	ENSSGRG00000042370	ccdc28a (ENSSGRG00000042369)	snap23.1 (ENSSGRG00000042368)	snap23.2 (ENSSGRG00000042367)	RIN3 (ENSSGRG00000042334)	TMEM121 (ENSSGRG00000042332)	ENSSGRG00000042331	dnal1 (ENSSGRG00000042302)	ENSSGRG00000042301	cdc42ep4a (ENSSGRG00000042299)
Common carp reference	MODERN SPECIES	30	ENSCCRG00000065724	klf11b (ENSCCRG00000006609)	ywhaqb (ENSCCRG00000027933)	gcfc2 (ENSCCRG00000037792)	grhl1 (ENSCCRG00000004918)	eva1a (ENSCCRG00000024363)	ENSCCRG00000024360	ENSCCRG00000064348	KCNK2 (ENSCCRG00000043815)	ENSCCRG00000024315	CENPF (ENSCCRG00000039055)	smyd2a (ENSCCRG00000033331)	prox1a (ENSCCRG00000061297)	snx9a (ENSCCRG00000041673)	ENSCCRG00000015411 #21	dnajc27 (ENSCCRG00000058575) #22	ENSCCRG00000067536	ENSCCRG00000013319	ENSCCRG00000029439	zgc:162964 (ENSCCRG00000047711)	ENSCCRG00000047720	ccdc28a (ENSCCRG00000047722)	snap23.1 (ENSCCRG00000066190)	snap23.2 (ENSCCRG00000047736)	snap23.2 (ENSCCRG00000036552)	ENSCCRG00000036557	pth2 (ENSCCRG00000064392)	ENSCCRG00000061596	ENSCCRG00000017363	ENSCCRG00000064294	fut8a (ENSCCRG00000017152)
Cyprininae	ANCESTRAL SPECIES	158	ENSGT00940000155982.e.a.a	ENSGT00940000157612.g	ENSGT01090000260040.b.b.b.a.m.a.a.b	ENSGT00390000000455.b.h	ENSGT00940000154096.b.b.a.h.a.a	ENSGT00940000158680.a	ENSGT00940000166224.a	ENSGT00940000156560.g.d	ENSGT00730000111187.a.b.b.b	ENSGT00940000157082.p	ENSGT00940000154790.a.a.b.h.b	ENSGT00940000156557.g.a	ENSGT00940000164041.a	ENSGT00390000016811.g.d #20	ENSGT00390000002143.b.a.g.b #21	ENSGT00940000157133.b #22	ENSGT00940000166718.a	ENSGT00950000183114.a.a.g	ENSGT00530000063651.a.p.a	ENSGT00500000044870.a.j.a.a	ENSGT00950000182843.a.a.a.a.tb.a	ENSGT00950000182843.a.a.a.a.ub.a.b	ENSGT00940000158622.f	ENSGT00410000026259.d	ENSGT00390000003866.a.b.a.b	ENSGT00940000168283.b	ENSGT00390000016904.g.a	ENSGT00530000063737.l.b.a	ENSGT00390000016577.b.a.c	ENSGT00940000156087.a.a.b	ENSGT00390000007015.w.b
Cyprininae_a	ANCESTRAL SPECIES	160	ENSGT00940000160878.e.b	ENSGT00940000157612.g	ENSGT01090000260040.b.b.b.a.m.a.a.b	ENSGT00390000000455.b.h	ENSGT00940000154096.b.b.a.h.a.a	ENSGT00940000158680.a	ENSGT00940000166224.a	ENSGT00940000156560.g.d	ENSGT00730000111187.a.b.b.b	ENSGT00940000157082.p	ENSGT00940000154790.a.a.b.h.b	ENSGT00940000156557.g.a	ENSGT00940000164041.a	ENSGT00390000016811.g.d #20	ENSGT00390000002143.b.a.g.b #21	ENSGT00940000157133.b #22	ENSGT00940000166718.a	ENSGT00950000183114.a.a.g	ENSGT00530000063651.a.p.a	ENSGT00500000044870.a.j.a.a	ENSGT00950000182843.a.a.a.a.tb.a	ENSGT00950000182843.a.a.a.a.ub.a.b	ENSGT00940000158622.f	ENSGT00410000026259.d	ENSGT00390000003866.a.b.a.b	ENSGT00940000168283.b	ENSGT00390000016904.g.a	ENSGT00530000063737.l.b.a	ENSGT00390000016577.b.a.c	ENSGT00940000156087.a.a.b	ENSGT00390000007015.w.b
Common carp reference	MODERN SPECIES	4	klf11b (ENSCCRG00000029179)	grhl1 (ENSCCRG00000052831)	gcfc2 (ENSCCRG00000031037)	eva1a (ENSCCRG00000027099)	ctsba (ENSCCRG00000027069)	ENSCCRG00000024298	KCNK2 (ENSCCRG00000027064)	CENPF (ENSCCRG00000027044)	smyd2a (ENSCCRG00000026022)	prox1a (ENSCCRG00000061921)	snx9a (ENSCCRG00000008760)	ENSCCRG00000008753	ENSCCRG00000057267	pomca (ENSCCRG00000008745) #20	ENSCCRG00000022454 #21	dnajc27 (ENSCCRG00000008603) #22	ENSCCRG00000008596	ENSCCRG00000045851	zgc:162964 (ENSCCRG00000046158)	ccdc28a (ENSCCRG00000046167)	snap23.1 (ENSCCRG00000047726)	snap23.2 (ENSCCRG00000066564)	ENSCCRG00000034624	pth2 (ENSCCRG00000034617)	ENSCCRG00000078141	ENSCCRG00000057185	ENSCCRG00000070861	fut8a (ENSCCRG00000034477)	gphna (ENSCCRG00000080356)	pals1a (ENSCCRG00000015300)	eif2s1a (ENSCCRG00000019525)
Goldfish	MODERN SPECIES	1700																dnajc27 (ENSCARG00000036751) #22	ENSCARG00000036895	ENSCARG00000039586
Zebrafish	MODERN SPECIES	8	klf11b (ENSDARG00000013794)	ywhaqb (ENSDARG00000023323)	grhl1 (ENSDARG00000061391)	gcfc2 (ENSDARG00000079020)	eva1a (ENSDARG00000061405)	ENSDARG00000097530	ctsba (ENSDARG00000055120)	ENSDARG00000075444	KCNK2 (ENSDARG00000055123)	CENPF (ENSDARG00000055133)	smyd2a (ENSDARG00000055151)	prox1a (ENSDARG00000055158)	snx9a (ENSDARG00000000837)	pomca (ENSDARG00000043135) #20	EFR3B (ENSDARG00000033516) #21	dnajc27 (ENSDARG00000070916) #22	ENSDARG00000043141	XDH (ENSDARG00000055240)	zgc:162964 (ENSDARG00000024602)	ECT2L (ENSDARG00000091471)	ccdc28a (ENSDARG00000022983)	snap23.1 (ENSDARG00000012874)	snap23.2 (ENSDARG00000055252)	ENSDARG00000077618	pth2 (ENSDARG00000022951)	TMEM121 (ENSDARG00000061562)	ENSDARG00000091366	dnal1 (ENSDARG00000097505)	dnal1 (ENSDARG00000034042)	fut8a (ENSDARG00000015449)	gphna (ENSDARG00000089076)
Euteleosteomorpha	ANCESTRAL SPECIES	285								ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g #20	ENSGT00390000002143.b.b #21	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000175756	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a
Acanthomorphata	ANCESTRAL SPECIES	258						ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00530000066677	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	103					ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00530000066677	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000177133	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT01030000235241	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169
Percomorphaceae	ANCESTRAL SPECIES	22	ENSGT00390000007364.j	ENSGT00940000154793.C	ENSGT00940000154365.a.b	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00530000066677	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT01030000235241	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00940000165332.C	ENSGT00940000164059	ENSGT00940000153571.b	ENSGT00940000172021	ENSGT00940000175756
Tiger tail seahorse	MODERN SPECIES	514	AMIGO1 (ENSHCOG00000003703)	GRM6 (ENSHCOG00000003691)	CDK16 (ENSHCOG00000003661)	abt1 (ENSHCOG00000003610)	ENSHCOG00000003571	rad51c (ENSHCOG00000003223)	kcnd1 (ENSHCOG00000003209)	gripap1 (ENSHCOG00000003180)	plxna3 (ENSHCOG00000003075)	bcap31 (ENSHCOG00000003029)	slc6a8 (ENSHCOG00000003009)	slc35a2 (ENSHCOG00000002991)	otud5a (ENSHCOG00000002974)	creg1 (ENSHCOG00000002961)	ENSHCOG00000002955	dnajc27 (ENSHCOG00000002948) #22	XDH (ENSHCOG00000002935)	tspan7b (ENSHCOG00000002917)	ENSHCOG00000002898	f2 (ENSHCOG00000002889)	fbxo3 (ENSHCOG00000002881)	ENSHCOG00000002871	SH3YL1 (ENSHCOG00000002866)	ENSHCOG00000002843	ENSHCOG00000002820	lipt1 (ENSHCOG00000002815)	ENSHCOG00000002807	bco1l (ENSHCOG00000002789)	ENSHCOG00000002766	ENSHCOG00000002743	ENSHCOG00000002732
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00530000067036.c	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00530000066677	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT01030000235020	ENSGT01030000235241	ENSGT00940000157308.h	ENSGT00940000178125	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00940000153571.b	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00530000067036.c	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT01030000235241	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b	ENSGT00940000164897.a.b	ENSGT00390000007225
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00940000165301.b	ENSGT00940000158265	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT01030000235020	ENSGT00940000153737.b.g.a	ENSGT01030000235241	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b
Anabantaria	ANCESTRAL SPECIES	39			ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT01030000235241	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00390000007225	ENSGT00940000164897.a.b	ENSGT00530000063564.b.b.a	ENSGT00950000183138.a.b.r.a	ENSGT00940000158714.c
Anabantoidei	ANCESTRAL SPECIES	28	ENSGT00390000005717.s	ENSGT00940000155212.ab.a	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT01030000235241	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00920000150296	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b	ENSGT00390000007225	ENSGT00940000164897.a.b	ENSGT00530000063564.b.b.a
Climbing perch	MODERN SPECIES	11	ENSATEG00000028039	ENSATEG00000009344	ENSATEG00000028204	ENSATEG00000029232	ENSATEG00000025532	ENSATEG00000009214	pcid2 (ENSATEG00000025387)	prozb (ENSATEG00000027791)	f10 (ENSATEG00000009110)	f7i (ENSATEG00000009085)	f7 (ENSATEG00000008997)	f7l (ENSATEG00000008960)	ENSATEG00000008915	ENSATEG00000008849	ENSATEG00000025671	ENSATEG00000008796 #22	ENSATEG00000008758	ENSATEG00000008556	ENSATEG00000025524	ENSATEG00000029253	ENSATEG00000029386	ENSATEG00000026958	ENSATEG00000030190	ENSATEG00000008436	ENSATEG00000028807	ENSATEG00000025264	ENSATEG00000008317	ENSATEG00000008265	abi3bpb (ENSATEG00000008126)	ENSATEG00000008021	ENSATEG00000008013
Siamese fighting fish	MODERN SPECIES	10	f2 (ENSBSLG00000001670)	ENSBSLG00000001646	ENSBSLG00000001642	ENSBSLG00000001633	pcid2 (ENSBSLG00000001561)	prozb (ENSBSLG00000001538)	ENSBSLG00000001532	pcid2 (ENSBSLG00000001521)	f7 (ENSBSLG00000001462)	f7 (ENSBSLG00000001437)	f7l (ENSBSLG00000001423)	f10 (ENSBSLG00000001367)	ENSBSLG00000001345	creg1 (ENSBSLG00000001338)	ENSBSLG00000001331	dnajc27 (ENSBSLG00000001286) #22	tspan7b (ENSBSLG00000010468)	mid1ip1b (ENSBSLG00000010466)	ENSBSLG00000010456	IMPG2 (ENSBSLG00000010443)	ENSBSLG00000010433	ENSBSLG00000010425	abi3bpb (ENSBSLG00000010329)	ENSBSLG00000010309	ftcd (ENSBSLG00000010269)	fzd7a (ENSBSLG00000010253)	dph3 (ENSBSLG00000010249)	ENSBSLG00000010245	ENSBSLG00000010237	ENSBSLG00000010218	mlpha (ENSBSLG00000010198)
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000022670	ENSMAMG00000022675	ENSMAMG00000022676	ENSMAMG00000022681	ENSMAMG00000022683	ENSMAMG00000022624	ENSMAMG00000024940	ENSMAMG00000026277	ENSMAMG00000022691	ENSMAMG00000027755	ENSMAMG00000022698	ENSMAMG00000022700	ENSMAMG00000022702	ENSMAMG00000022703	ENSMAMG00000026175	ENSMAMG00000022707 #22	ENSMAMG00000022712	pcid2 (ENSMAMG00000022761)	f10 (ENSMAMG00000022771)	f7i (ENSMAMG00000025719)	f7 (ENSMAMG00000022777)	f7l (ENSMAMG00000022778)	ENSMAMG00000022781	ENSMAMG00000027158	ENSMAMG00000025702	ENSMAMG00000022791	ENSMAMG00000022792	ENSMAMG00000027303	ENSMAMG00000022797	ENSMAMG00000022800	tmem198b (ENSMAMG00000022801)
Carangaria	ANCESTRAL SPECIES	30	ENSGT00940000168817	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000177133	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b	ENSGT00940000164897.a.b	ENSGT01030000235464	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00940000158714.c
Carangaria_A	ANCESTRAL SPECIES	61	ENSGT00940000154817.b.b.b.p	ENSGT00940000177199	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b	ENSGT00940000164897.a.b	ENSGT01030000235464	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00940000158714.c
Seriola	ANCESTRAL SPECIES	71	ENSGT00940000154817.b.b.b.p	ENSGT00940000177199.a.b	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT01030000235241.a.a	ENSGT01030000235241.b	ENSGT01030000235241.a.b	ENSGT00940000153737.b.g.a	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b	ENSGT00940000164897.a.b
Greater amberjack	MODERN SPECIES	152	gli2b (ENSSDUG00000002283)	CLASP1 (ENSSDUG00000002450)	f2 (ENSSDUG00000002556)	ENSSDUG00000002597	ENSSDUG00000002613	ENSSDUG00000002635	pcid2 (ENSSDUG00000002753)	prozb (ENSSDUG00000002834)	f10 (ENSSDUG00000002846)	f7i (ENSSDUG00000002886)	f7 (ENSSDUG00000002912)	f7l (ENSSDUG00000002971)	ENSSDUG00000002987	creg1 (ENSSDUG00000003007)	ENSSDUG00000003022	dnajc27 (ENSSDUG00000003036) #22	ENSSDUG00000003121	ENSSDUG00000003138	XDH (ENSSDUG00000003158)	tspan7b (ENSSDUG00000003225)	mid1ip1b (ENSSDUG00000003243)	ENSSDUG00000003259	ENSSDUG00000003277	ENSSDUG00000003292	ENSSDUG00000003303	ENSSDUG00000003316	ENSSDUG00000003330	ENSSDUG00000003394	senp7b (ENSSDUG00000003411)	ENSSDUG00000003441	abi3bpb (ENSSDUG00000003488)
Yellowtail amberjack	MODERN SPECIES	3263	CLASP1 (ENSSLDG00000014462)	ENSSLDG00000014560	f2 (ENSSLDG00000014579)	ENSSLDG00000014615	ENSSLDG00000014653	ENSSLDG00000014716	pcid2 (ENSSLDG00000014914)	prozb (ENSSLDG00000014942)	f10 (ENSSLDG00000014961)	f7i (ENSSLDG00000014979)	f7 (ENSSLDG00000014996)	f7l (ENSSLDG00000015056)	ENSSLDG00000015081	creg1 (ENSSLDG00000015110)	ENSSLDG00000015125	dnajc27 (ENSSLDG00000015143) #22	ENSSLDG00000015168	ENSSLDG00000015186	XDH (ENSSLDG00000015215)	tspan7b (ENSSLDG00000015287)	mid1ip1b (ENSSLDG00000015327)	ENSSLDG00000015351	ENSSLDG00000015359	bcor (ENSSLDG00000015374)	ENSSLDG00000015406	ENSSLDG00000015450	abi3bpb (ENSSLDG00000015515)	ftcd (ENSSLDG00000015636)	cdk15 (ENSSLDG00000015687)	ENSSLDG00000015750	ENSSLDG00000015765
Barramundi perch	MODERN SPECIES	499	ENSLCAG00010025030	f2 (ENSLCAG00010025074)	ENSLCAG00010025128	ENSLCAG00010025131	ENSLCAG00010025133	ENSLCAG00010025149	pcid2 (ENSLCAG00010025163)	prozb (ENSLCAG00010025176)	f10 (ENSLCAG00010025179)	f7i (ENSLCAG00010025206)	f7 (ENSLCAG00010025247)	f7l (ENSLCAG00010025255)	ENSLCAG00010025267	creg1 (ENSLCAG00010025273)	ENSLCAG00010025276	dnajc27 (ENSLCAG00010025283) #22	ENSLCAG00010025302	XDH (ENSLCAG00010025355)	tspan7b (ENSLCAG00010025420)	mid1ip1b (ENSLCAG00010025437)	ENSLCAG00010025442
Pleuronectoidei	ANCESTRAL SPECIES	85				ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00940000177133	ENSGT00940000157133 #22	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00390000005581.a	ENSGT01030000235020	ENSGT00940000167515	ENSGT00940000164897.a.b	ENSGT00940000159606	ENSGT00530000063564.b.a.a	ENSGT00940000153737.b.g.a
Turbot	MODERN SPECIES		ENSSMAG00000000047	ENSSMAG00000000046	ENSSMAG00000000045	ENSSMAG00000000044	ENSSMAG00000000043	ENSSMAG00000000042	pcid2 (ENSSMAG00000000041)	ENSSMAG00000000055	f10 (ENSSMAG00000000039)	f7i (ENSSMAG00000000038)	f7 (ENSSMAG00000000037)	f7l (ENSSMAG00000000036)	ENSSMAG00000000035	ENSSMAG00000027336	ENSSMAG00000000033	ENSSMAG00000000032 #22	ENSSMAG00000000031	ENSSMAG00000000029	ENSSMAG00000036036	ENSSMAG00000025354	ENSSMAG00000027108	ENSSMAG00000000025	ENSSMAG00000000023	ENSSMAG00000000022	ENSSMAG00000027380	ENSSMAG00000000021	ENSSMAG00000025992	ENSSMAG00000000017	ENSSMAG00000000013	ENSSMAG00000000016	ENSSMAG00000035088
Tongue sole	MODERN SPECIES	5	ENSCSEG00000008612	creg1 (ENSCSEG00000008601)	ENSCSEG00000008574	f7l (ENSCSEG00000008562)	ENSCSEG00000008501	ENSCSEG00000008481	f2 (ENSCSEG00000008468)	pcid2 (ENSCSEG00000008435)	ENSCSEG00000008427	f10 (ENSCSEG00000014571)	f7i (ENSCSEG00000014561)	f7 (ENSCSEG00000014550)	ENSCSEG00000014542	ENSCSEG00000014516	cdk15 (ENSCSEG00000014325)	dnajc27 (ENSCSEG00000014284) #22	XDH (ENSCSEG00000014252)	tspan7b (ENSCSEG00000014244)	mid1ip1b (ENSCSEG00000014234)	fbxo3 (ENSCSEG00000014218)	ENSCSEG00000014210	ENSCSEG00000014199	SH3YL1 (ENSCSEG00000014185)	ENSCSEG00000014173	lipt1 (ENSCSEG00000014169)	ENSCSEG00000014153	bco1l (ENSCSEG00000014146)	ENSCSEG00000014127	ENSCSEG00000014101	ENSCSEG00000014095	ENSCSEG00000014070
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00940000153571.b	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00530000067036.c	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT01030000235020	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b
Tetraodontidae	ANCESTRAL SPECIES	26	ENSGT00940000172021	ENSGT00940000153571.b	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00940000153737.b.g.a	ENSGT00940000157308.h	ENSGT00500000044890.a.a.f	ENSGT01030000235020	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000155021	ENSGT00940000165189	ENSGT00940000159144.B	ENSGT00940000159144.A.e.a
Tetraodon	MODERN SPECIES	18	f2 (ENSTNIG00000006584)	ENSTNIG00000006585	ENSTNIG00000001541	ENSTNIG00000000090	ENSTNIG00000006586	pcid2 (ENSTNIG00000006587)	ENSTNIG00000006588	f10 (ENSTNIG00000006589)	f7i (ENSTNIG00000006590)	f7 (ENSTNIG00000006591)	f7l (ENSTNIG00000006592)	ENSTNIG00000006593	ENSTNIG00000000471	creg1 (ENSTNIG00000006594)	ENSTNIG00000006595	dnajc27 (ENSTNIG00000006596) #22	ENSTNIG00000006597	XDH (ENSTNIG00000006598)	tspan7b (ENSTNIG00000006599)	bcor (ENSTNIG00000006600)	ENSTNIG00000006601	abi3bpb (ENSTNIG00000006602)	ENSTNIG00000019635	ftcd (ENSTNIG00000006740)	CYP4F8 (ENSTNIG00000017147)	cyp4f3 (ENSTNIG00000006739)	ENSTNIG00000011102	ENSTNIG00000017148	ENSTNIG00000017149	ENSTNIG00000017150	ENSTNIG00000017151
Fugu	MODERN SPECIES	20	ENSTRUG00000033245	fbxo3 (ENSTRUG00000007287)	f2 (ENSTRUG00000005893)	ENSTRUG00000005880	ENSTRUG00000030067	ENSTRUG00000005718	pcid2 (ENSTRUG00000005346)	prozb (ENSTRUG00000005303)	f10 (ENSTRUG00000004411)	f7i (ENSTRUG00000021676)	f7 (ENSTRUG00000003673)	f7l (ENSTRUG00000020579)	ENSTRUG00000003398	creg1 (ENSTRUG00000003275)	ENSTRUG00000022880	dnajc27 (ENSTRUG00000023427) #22	ENSTRUG00000001642	XDH (ENSTRUG00000001334)	tspan7b (ENSTRUG00000021695)	mid1ip1b (ENSTRUG00000019505)	ENSTRUG00000025605	ENSTRUG00000027848	senp7b (ENSTRUG00000020241)	ENSTRUG00000000964	abi3bpb (ENSTRUG00000000774)	ftcd (ENSTRUG00000000589)	ENSTRUG00000000720	CYP4F8 (ENSTRUG00000000482)	ENSTRUG00000026454	zgc:65895 (ENSTRUG00000024740)	ENSTRUG00000028652
Eupecaria_A	ANCESTRAL SPECIES	31	ENSGT00940000172021	ENSGT00940000153571.b	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT01030000235020	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	884								pcid2 (ENSLBEG00000028363)	prozb (ENSLBEG00000028366)	f10 (ENSLBEG00000028370)	f7i (ENSLBEG00000028374)	f7 (ENSLBEG00000028378)	f7l (ENSLBEG00000028380)	creg1 (ENSLBEG00000028384)	ENSLBEG00000028387	dnajc27 (ENSLBEG00000028391) #22	ENSLBEG00000028393	ENSLBEG00000028395
Ballan wrasse	MODERN SPECIES	2287															ENSLBEG00000018710	dnajc27 (ENSLBEG00000018738) #22
Eupecaria_B	ANCESTRAL SPECIES	28	ENSGT00940000172021	ENSGT00940000153571.b	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT01030000235020	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000158239.a.a.a.b	ENSGT00940000159606	ENSGT00940000164897.a.b	ENSGT00390000007225	ENSGT01100000263502.A.a.a.a.b.a.b
Eupecaria_C	ANCESTRAL SPECIES	38	ENSGT00940000153571.b	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00940000177133	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT00990000204585	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.a.i.a	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000158239.a.b	ENSGT00940000159606	ENSGT00940000164897.a.b
Gilthead seabream	MODERN SPECIES	16	ENSSAUG00010006327	f2 (ENSSAUG00010005748)	fbxo3 (ENSSAUG00010005553)	ENSSAUG00010005549	EFR3B (ENSSAUG00010005516) #21	ENSSAUG00010005504	ENSSAUG00010005498	ENSSAUG00010005483	ENSSAUG00010005473	ENSSAUG00010005458	lipt1 (ENSSAUG00010005452)	ENSSAUG00010003199	bco1l (ENSSAUG00010003087)	ENSSAUG00010002774	ENSSAUG00010002753	dnajc27 (ENSSAUG00010002743) #22	ENSSAUG00010002735	tspan7b (ENSSAUG00010027072)	ENSSAUG00010027068	ENSSAUG00010027065	ENSSAUG00010027064	ENSSAUG00010027063	ENSSAUG00010027060	ENSSAUG00010027058	ENSSAUG00010027056	ENSSAUG00010027053	ftcd (ENSSAUG00010026993)	ENSSAUG00010026955	ENSSAUG00010026952	ENSSAUG00010026950	ENSSAUG00010026948
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	64			ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00940000177133	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT00990000204585	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.a.i.a	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000158239.a.b	ENSGT00940000159606	ENSGT00940000164897.a.b
Large yellow croaker	MODERN SPECIES	486	dnai4 (ENSLCRG00005005031)	ENSLCRG00005005032 #21	POMC-B (ENSLCRG00005005035) #20	f2 (ENSLCRG00005005044)	ENSLCRG00005005251	ENSLCRG00005005252	ENSLCRG00005005253	pcid2 (ENSLCRG00005005254)	prozb (ENSLCRG00005005258)	f10 (ENSLCRG00005005260)	f7i (ENSLCRG00005005265)	f7 (ENSLCRG00005005329)	f7l (ENSLCRG00005005330)	ENSLCRG00005005331	ENSLCRG00005005332	dnajc27 (ENSLCRG00005005333) #22	XDH (ENSLCRG00005005341)	tspan7b (ENSLCRG00005005947)	mid1ip1b (ENSLCRG00005005950)	bcor (ENSLCRG00005005951)	ENSLCRG00005005952	senp7b (ENSLCRG00005005953)	ENSLCRG00005005956	abi3bpb (ENSLCRG00005005958)	ftcd (ENSLCRG00005005968)	ENSLCRG00005006151	ENSLCRG00005006153	ENSLCRG00005006156	ENSLCRG00005006161	ENSLCRG00005006162	cdk15 (ENSLCRG00005006164)
Perciformes	ANCESTRAL SPECIES	44				ENSGT00530000067036.c	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101.f	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00950000183114.a.a	ENSGT00940000164059	ENSGT00940000153571.b	ENSGT00940000172021	ENSGT00940000175756	ENSGT00940000159969.b.a.b	ENSGT00510000048137	ENSGT00940000154607.a	ENSGT00390000008846	ENSGT00940000163243	ENSGT00950000182913.A.b.a	ENSGT00940000155248.vb.g.a	ENSGT00390000002188	ENSGT00390000002143.b.b #21	ENSGT00390000016811.g.g.a #20
Cottioidei	ANCESTRAL SPECIES	49	ENSGT01030000235020	ENSGT00940000153737.b.g.a	ENSGT00940000165332.C	ENSGT00940000156153.y.b	ENSGT00530000067036.c	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101.f	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00940000177133	ENSGT00940000157133 #22	ENSGT00950000183114.a.a	ENSGT00940000164059	ENSGT00940000153571.b	ENSGT00940000172021	ENSGT00940000159606	ENSGT00940000158239.a.b	ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00390000005581.a	ENSGT00730000111696.a	ENSGT00950000183014.f.a	ENSGT00940000166383	ENSGT00530000063715.b	ENSGT00950000182910.a.a.d	ENSGT00390000003896
Stickleback	MODERN SPECIES		ephx2 (ENSGACG00000015516)	clcn4 (ENSGACG00000015506)	ENSGACG00000015503	ENSGACG00000015498	ENSGACG00000015497	tspan7b (ENSGACG00000015494)	ENSGACG00000015492	SFT2D2 (ENSGACG00000015491)	PCID2 (ENSGACG00000015489)	ENSGACG00000015488	f10 (ENSGACG00000015474)	ENSGACG00000015472	f7 (ENSGACG00000015464)	ENSGACG00000015463	creg1 (ENSGACG00000015462)	dnajc27 (ENSGACG00000015457) #22	XDH (ENSGACG00000015453)	f2 (ENSGACG00000015448)	fbxo3 (ENSGACG00000015443)	ENSGACG00000015441	ENSGACG00000015433	cdk15 (ENSGACG00000015430)	fzd7a (ENSGACG00000015429)	ENSGACG00000015422	ENSGACG00000015420	ftcd (ENSGACG00000015411)	cd59 (ENSGACG00000015409)	ENSGACG00000015406	eef1b2 (ENSGACG00000015402)	arl11 (ENSGACG00000015399)	cavin2b (ENSGACG00000015398)
Lumpfish	MODERN SPECIES	11	ENSCLMG00005013075	ACKR3 (ENSCLMG00005013074)	ENSCLMG00005013072	ENSCLMG00005013070	ENSCLMG00005013069	TSPAN7 (ENSCLMG00005013068)	ENSCLMG00005013066	ENSCLMG00005013065	pcid2 (ENSCLMG00005013059)	f10 (ENSCLMG00005013051)	f7i (ENSCLMG00005012966)	f7l (ENSCLMG00005012961)	ENSCLMG00005012948	creg1 (ENSCLMG00005012945)	ENSCLMG00005012943	dnajc27 (ENSCLMG00005012942) #22	f2 (ENSCLMG00005012301)	fbxo3 (ENSCLMG00005012300)	cdk15 (ENSCLMG00005012298)	ENSCLMG00005012296	FZD7 (ENSCLMG00005012295)	ENSCLMG00005012293	ENSCLMG00005012291	ENSCLMG00005012290	ftcd (ENSCLMG00005012279)	cd59 (ENSCLMG00005012277)	ENSCLMG00005012276	eef1b2 (ENSCLMG00005012274)	ENSCLMG00005012272	arl11 (ENSCLMG00005012270)	ebpl (ENSCLMG00005012249)
Perciformes_a	ANCESTRAL SPECIES	46							ENSGT00390000001101.f	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00950000183114.a.a	ENSGT00940000164059	ENSGT00940000153571.b	ENSGT00940000175756	ENSGT00940000159969.b.a.b	ENSGT00510000048137	ENSGT00940000154607.a	ENSGT00390000008846	ENSGT00940000163243	ENSGT00950000182913.A.b.a	ENSGT00940000155248.vb.g.b	ENSGT00390000007225	ENSGT00940000159606	ENSGT00940000158239.b	ENSGT00940000158239.a.b
Channel bull blenny	MODERN SPECIES	131							ENSCGOG00000018034	prozb (ENSCGOG00000018229)	f10 (ENSCGOG00000018234)	f7i (ENSCGOG00000018274)	f7 (ENSCGOG00000018286)	f7l (ENSCGOG00000018287)	ENSCGOG00000018291	creg1 (ENSCGOG00000018292)	ENSCGOG00000018293	dnajc27 (ENSCGOG00000018296) #22	ENSCGOG00000015055	mlpha (ENSCGOG00000015059)	ENSCGOG00000015061	ENSCGOG00000015064	dph3 (ENSCGOG00000015067)	cdk15 (ENSCGOG00000015074)	FZD7 (ENSCGOG00000015104)	ENSCGOG00000015108	abi3bpb (ENSCGOG00000015113)	ftcd (ENSCGOG00000015118)	ENSCGOG00000015147	cd59 (ENSCGOG00000015626)	ENSCGOG00000015628	ebpl (ENSCGOG00000015633)	arl11 (ENSCGOG00000015635)
Pike perch	MODERN SPECIES	367					pcid2 (ENSSLUG00000016962)	ENSSLUG00000016953	f10 (ENSSLUG00000016899)	f7i (ENSSLUG00000025025)	ENSSLUG00000025023	f7 (ENSSLUG00000025017)	ENSSLUG00000025013	f7l (ENSSLUG00000025009)	ENSSLUG00000025001	creg1 (ENSSLUG00000024997)	ENSSLUG00000024996	dnajc27 (ENSSLUG00000024995) #22	XDH (ENSSLUG00000009897)	ENSSLUG00000008637	f2 (ENSSLUG00000007626)
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00530000067036.c	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00530000066677	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT00990000204585
Ovalentaria_B	ANCESTRAL SPECIES	33	ENSGT00940000153571.b	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000177133	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT00990000204585	ENSGT01030000235241	ENSGT00940000157308.h	ENSGT00530000063503.b	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b
Pomacentridae	ANCESTRAL SPECIES	83	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT01030000235020	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00940000177133	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00390000018525.a.b.f	ENSGT00940000165332.C	ENSGT00940000164059
Pomacentridae_A	ANCESTRAL SPECIES	82	ENSGT00970000193706	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694.k.a	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00940000177133	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b.c	ENSGT00500000044890.a.a.f	ENSGT00390000018525.a.b.f	ENSGT00940000165332.C	ENSGT00940000164059
Amphiprion	ANCESTRAL SPECIES	94	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000153737.b.g.a	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694.k.a	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00940000177133	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b.c	ENSGT00500000044890.a.a.f	ENSGT00390000018525.a.b.f	ENSGT00940000165332.C	ENSGT00940000164059
Clown anemonefish	MODERN SPECIES	632						bcor (ENSAOCG00000006419)	ENSAOCG00000006443	pcid2 (ENSAOCG00000006485)	prozb (ENSAOCG00000006494)	f10 (ENSAOCG00000006507)	f7 (ENSAOCG00000006528)	f7l (ENSAOCG00000006543)	ENSAOCG00000006560	creg1 (ENSAOCG00000006567)	ENSAOCG00000006576	dnajc27 (ENSAOCG00000006604) #22	ENSAOCG00000006626	nadsyn1 (ENSAOCG00000006673)
Orange clownfish	MODERN SPECIES	16	ENSAPEG00000009113	abi3bpb (ENSAPEG00000009127)	ftcd (ENSAPEG00000009150)	bcor (ENSAPEG00000009196)	ENSAPEG00000009213	pcid2 (ENSAPEG00000009235)	ENSAPEG00000009254	prozb (ENSAPEG00000009263)	f10 (ENSAPEG00000009274)	f7i (ENSAPEG00000009286)	f7 (ENSAPEG00000009356)	f7l (ENSAPEG00000009519)	ENSAPEG00000009529	creg1 (ENSAPEG00000009561)	ENSAPEG00000009569	dnajc27 (ENSAPEG00000009586) #22	ENSAPEG00000009617	ENSAPEG00000009646	XDH (ENSAPEG00000009682)	tspan7b (ENSAPEG00000009780)	ENSAPEG00000009817	mid1ip1b (ENSAPEG00000009857)	ENSAPEG00000009875	f2 (ENSAPEG00000009889)	ENSAPEG00000009925	ENSAPEG00000010006	ENSAPEG00000010023	ENSAPEG00000010044	ENSAPEG00000010072	ENSAPEG00000010145	ENSAPEG00000010225
Spiny chromis	MODERN SPECIES	2466												f7 (ENSAPOG00000020175)	f7l (ENSAPOG00000020181)	ENSAPOG00000020220	creg1 (ENSAPOG00000020243)	dnajc27 (ENSAPOG00000020278) #22
Bicolor damselfish	MODERN SPECIES	2171															ENSSPAG00000009180	dnajc27 (ENSSPAG00000009154) #22	ENSSPAG00000009133	XDH (ENSSPAG00000009047)	tspan7b (ENSSPAG00000009020)	mid1ip1b (ENSSPAG00000009012)	ENSSPAG00000009002	ENSSPAG00000008989	f2 (ENSSPAG00000008959)
Cichlidae	ANCESTRAL SPECIES	48	ENSGT00940000153571.b	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694.n	ENSGT00940000157694.m	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT01030000235020	ENSGT01030000235241	ENSGT00940000157308.h	ENSGT00530000063503.b	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000177424	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694.n	ENSGT00940000157694.m	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT01030000235020	ENSGT01030000235241	ENSGT00940000157308.h	ENSGT00530000063503.b	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169.o	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT01030000235171	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694.n	ENSGT00940000157694.m	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT01030000235020	ENSGT01030000235241	ENSGT00940000157308.h	ENSGT00530000063503.b	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169.o	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b
Haplochromini	ANCESTRAL SPECIES	41	ENSGT01030000235171	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694.n	ENSGT00940000157694.m	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT00990000204585
Burton s mouthbrooder	MODERN SPECIES	418	ENSHBUG00000001417	f2 (ENSHBUG00000001425)	ENSHBUG00000001429	ENSHBUG00000001438	ENSHBUG00000001444	pcid2 (ENSHBUG00000001447)	prozb (ENSHBUG00000001451)	f10 (ENSHBUG00000001455)	f10 (ENSHBUG00000001458)	f7i (ENSHBUG00000001461)	f7 (ENSHBUG00000001466)	f7l (ENSHBUG00000001471)	ENSHBUG00000001477	creg1 (ENSHBUG00000001482)	ENSHBUG00000001486	dnajc27 (ENSHBUG00000001491) #22	ENSHBUG00000001501	XDH (ENSHBUG00000001512)	tspan7b (ENSHBUG00000001517)	mid1ip1b (ENSHBUG00000001519)	bcor (ENSHBUG00000001523)
Haplochromini_A	ANCESTRAL SPECIES	52	ENSGT01030000235171	ENSGT00940000164059.j	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694.n	ENSGT00940000157694.m	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT00990000204585
P. nyererei	MODERN SPECIES	633													ENSPNYG00000023676	creg1 (ENSPNYG00000023678)	ENSPNYG00000023679	dnajc27 (ENSPNYG00000023681) #22	ENSPNYG00000023684	XDH (ENSPNYG00000023686)	tspan7b (ENSPNYG00000023689)	mid1ip1b (ENSPNYG00000023691)	ENSPNYG00000023692	ENSPNYG00000023693	bcor (ENSPNYG00000023694)	ENSPNYG00000023696	ENSPNYG00000023697
Haplochromini_B	ANCESTRAL SPECIES	70	ENSGT01100000263513.a.a.b.b.b.b.b.a.a.a	ENSGT00940000164059.j	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694.n	ENSGT00940000157694.m	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005012253	ENSMZEG00005012234	ENSMZEG00005012217	pcid2 (ENSMZEG00005012199)	prozb (ENSMZEG00005012189)	f10 (ENSMZEG00005012179)	f10 (ENSMZEG00005012168)	f7i (ENSMZEG00005012131)	f7 (ENSMZEG00005012117)	f7l (ENSMZEG00005012111)	ENSMZEG00005012098	ENSMZEG00005012087	ENSMZEG00005012078	creg1 (ENSMZEG00005012073)	ENSMZEG00005012064	dnajc27 (ENSMZEG00005012058) #22	ENSMZEG00005012041	XDH (ENSMZEG00005012009)	tspan7b (ENSMZEG00005011993)	mid1ip1b (ENSMZEG00005011984)	bcor (ENSMZEG00005011975)	FAIM (ENSMZEG00005011968)	ralbb (ENSMZEG00005011961)	INHBB (ENSMZEG00005011953)	gli2b (ENSMZEG00005011934)	ENSMZEG00005011924	ENSMZEG00005011919	ENSMZEG00005011900	ENSMZEG00005011892	ENSMZEG00005011876	ENSMZEG00005011870
Eastern happy	MODERN SPECIES	14	ENSACLG00000004668	f2 (ENSACLG00000004466)	ENSACLG00000004260	ENSACLG00000004233	ENSACLG00000004197	ENSACLG00000004149	pcid2 (ENSACLG00000004120)	prozb (ENSACLG00000004100)	f10 (ENSACLG00000004084)	f7i (ENSACLG00000004071)	f7 (ENSACLG00000004064)	f7l (ENSACLG00000004054)	ENSACLG00000004046	creg1 (ENSACLG00000004034)	ENSACLG00000004030	dnajc27 (ENSACLG00000004019) #22	ENSACLG00000004004	XDH (ENSACLG00000003790)	tspan7b (ENSACLG00000003768)	mid1ip1b (ENSACLG00000003754)	bcor (ENSACLG00000003491)	ENSACLG00000003051	ENSACLG00000003029	ENSACLG00000002963	ENSACLG00000002933	ENSACLG00000002818	ENSACLG00000002749	ENSACLG00000002657	ENSACLG00000002626	ENSACLG00000002601	ENSACLG00000002463
Lyretail cichlid	MODERN SPECIES	360	ENSNBRG00000022181	f2 (ENSNBRG00000022236)	ENSNBRG00000022267	ENSNBRG00000022305	ENSNBRG00000022333	pcid2 (ENSNBRG00000022404)	prozb (ENSNBRG00000022424)	f10 (ENSNBRG00000022436)	f10 (ENSNBRG00000022444)	f7i (ENSNBRG00000022454)	f7 (ENSNBRG00000022461)	f7l (ENSNBRG00000022469)	ENSNBRG00000022486	creg1 (ENSNBRG00000022514)	ENSNBRG00000022531	dnajc27 (ENSNBRG00000022552) #22	ENSNBRG00000022571	XDH (ENSNBRG00000022609)	tspan7b (ENSNBRG00000022631)	mid1ip1b (ENSNBRG00000022655)	ENSNBRG00000022665	ENSNBRG00000022680
Nile tilapia	MODERN SPECIES	14	ENSONIG00000035982	ENSONIG00000008985	pcid2 (ENSONIG00000008988)	prozb (ENSONIG00000008989)	f10 (ENSONIG00000031915)	f10 (ENSONIG00000008990)	f7i (ENSONIG00000038745)	ENSONIG00000037113	f7l (ENSONIG00000027293)	f7 (ENSONIG00000032478)	f7 (ENSONIG00000036596)	f7l (ENSONIG00000008995)	creg1 (ENSONIG00000040548)	ENSONIG00000009000	ENSONIG00000009006	dnajc27 (ENSONIG00000009008) #22	ENSONIG00000009011	XDH (ENSONIG00000009017)	tspan7b (ENSONIG00000009041)	mid1ip1b (ENSONIG00000009043)	ENSONIG00000039119	ENSONIG00000039544	ENSONIG00000003976	ENSONIG00000039704	ENSONIG00000035529	ENSONIG00000038677	ENSONIG00000038421	ENSONIG00000038516	ENSONIG00000038930	ENSONIG00000036642	ENSONIG00000038485
Midas cichlid	MODERN SPECIES	659	ENSACIG00000009803	ENSACIG00000009774	ENSACIG00000009695	pcid2 (ENSACIG00000009657)	ENSACIG00000009647	f10 (ENSACIG00000009625)	f10 (ENSACIG00000009568)	f10 (ENSACIG00000009472)	f7i (ENSACIG00000009450)	f7 (ENSACIG00000009418)	f7l (ENSACIG00000009387)	ENSACIG00000009349	creg1 (ENSACIG00000009311)	ENSACIG00000009294	ENSACIG00000009231	dnajc27 (ENSACIG00000009139) #22	ENSACIG00000009118	XDH (ENSACIG00000009034)	tspan7b (ENSACIG00000009000)	mid1ip1b (ENSACIG00000008974)	bcor (ENSACIG00000008861)
Atherinomorphae	ANCESTRAL SPECIES	42	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00530000067036.c	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00530000066677	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a
Oryzias	ANCESTRAL SPECIES	43	ENSGT00940000154817.b.b.b.p	ENSGT00940000158265	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154474.C	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000162996.z	ENSGT00940000166660	ENSGT00940000154904	ENSGT00940000155522.g.b	ENSGT00390000016940.c.b.b	ENSGT00950000182905.a.a.a.a.a.b	ENSGT00940000156884	ENSGT00940000154319	ENSGT00390000005717.s	ENSGT00940000155212.ab.a
Oryzias_a	ANCESTRAL SPECIES	60	ENSGT00940000159862.b	ENSGT00940000159213.q.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000166660	ENSGT00940000155522.g.b	ENSGT00390000016940.c.b.b	ENSGT00950000182905.a.a.a.a.a.b	ENSGT00940000156884	ENSGT00940000154319	ENSGT00390000005717.s	ENSGT00940000155212.ab.a	ENSGT00940000156038.a.b.b.i.a.a	ENSGT01100000263489.a.b.a.b.a.a.a.a.a.a.b.a.b
Japanese Medaka HdrR	MODERN SPECIES	11	CLASP1 (ENSORLG00000001312)	ENSORLG00000001248	ENSORLG00000000197	f2 (ENSORLG00000019844)	ENSORLG00000023332	ENSORLG00000025319	ENSORLG00000001239	pcid2 (ENSORLG00000001231)	ENSORLG00000001211	f10 (ENSORLG00000025207)	f7 (ENSORLG00000001180)	f7l (ENSORLG00000001157)	ENSORLG00000001147	creg1 (ENSORLG00000001141)	ENSORLG00000027992	dnajc27 (ENSORLG00000001134) #22	ENSORLG00000001123	ENSORLG00000027970	ENSORLG00000025755	XDH (ENSORLG00000001080)	ENSORLG00000001035	MID1IP1 (ENSORLG00000001030)	ENSORLG00000022603	ENSORLG00000026740	ENSORLG00000023081	ENSORLG00000000748	ENSORLG00000025635	ENSORLG00000030198	ENSORLG00000022208	desmb (ENSORLG00000000706)	tmem198b (ENSORLG00000000688)
Chinese medaka	MODERN SPECIES	1290															ENSOSIG00000022037	dnajc27 (ENSOSIG00000022041) #22	XDH (ENSOSIG00000022262)	tspan7b (ENSOSIG00000023260)	mid1ip1b (ENSOSIG00000023263)	ENSOSIG00000023265
Oryzias_b	ANCESTRAL SPECIES	24	ENSGT00940000154817.b.b.b.p	ENSGT00940000158265	ENSGT00940000164059	ENSGT00940000165332.C	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154474.C	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000166660.d	ENSGT00940000155522.g.b	ENSGT00390000016940.c.b.b	ENSGT00950000182905.a.a.a.a.a.b	ENSGT00940000156884	ENSGT00940000154319	ENSGT00390000005717.s	ENSGT00940000155212.ab.a	ENSGT00940000156038.a.b.b.i.a.a	ENSGT01100000263489.a.b.a.b.a.a.a.a.a.a.b.a.b
Javanese ricefish	MODERN SPECIES	11	INHBB (ENSOJAG00000000074)	gli2b (ENSOJAG00000019974)	clcn4 (ENSOJAG00000018464)	ENSOJAG00000018453	ENSOJAG00000018440	f2 (ENSOJAG00000017952)	ENSOJAG00000017915	ENSOJAG00000017889	prozb (ENSOJAG00000017794)	f10 (ENSOJAG00000017737)	f7l (ENSOJAG00000017724)	ENSOJAG00000017690	ENSOJAG00000017616	creg1 (ENSOJAG00000017607)	ENSOJAG00000017596	dnajc27 (ENSOJAG00000017558) #22	ENSOJAG00000017525	XDH (ENSOJAG00000007230)	tspan7b (ENSOJAG00000006943)	mid1ip1b (ENSOJAG00000006931)	ENSOJAG00000006910	ENSOJAG00000006484	ENSOJAG00000006177	ENSOJAG00000005430	desmb (ENSOJAG00000005302)	tmem198b (ENSOJAG00000005274)	ENSOJAG00000005194	MAP3K2 (ENSOJAG00000005109)	sumo1 (ENSOJAG00000005075)	ENSOJAG00000005054	SHROOM2 (ENSOJAG00000005038)
Indian medaka	MODERN SPECIES	20	ENSOMEG00000017407	clcn4 (ENSOMEG00000017440)	ENSOMEG00000017460	ENSOMEG00000017502	f2 (ENSOMEG00000017563)	ENSOMEG00000017621	SFT2D2 (ENSOMEG00000017646)	ENSOMEG00000017664	pcid2 (ENSOMEG00000017699)	ENSOMEG00000017713	f10 (ENSOMEG00000017732)	f7 (ENSOMEG00000017756)	f7l (ENSOMEG00000017792)	creg1 (ENSOMEG00000017850)	ENSOMEG00000017867	dnajc27 (ENSOMEG00000017890) #22	ENSOMEG00000017923	XDH (ENSOMEG00000017982)	tspan7b (ENSOMEG00000018010)	MID1IP1 (ENSOMEG00000018017)	sowahcb (ENSOMEG00000018026)	ENSOMEG00000000464	ENSOMEG00000018306	ENSOMEG00000018631	desmb (ENSOMEG00000018706)	tmem198b (ENSOMEG00000018726)	ENSOMEG00000018747	ENSOMEG00000018761	MAP3K2 (ENSOMEG00000018801)	ENSOMEG00000018808	ENSOMEG00000018812
Cyprinodontiformes	ANCESTRAL SPECIES	42																ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT00390000005581.a	ENSGT00940000159169	ENSGT00530000063558.A.c.b	ENSGT00530000063503.a.a.a	ENSGT00940000157308.h	ENSGT00530000063564.b.a.a	ENSGT00530000063564.b.b.a	ENSGT00950000183138.a.b.r.a	ENSGT01090000260051.b.b.dc.a	ENSGT00940000156557.g
Aplocheiloidei	ANCESTRAL SPECIES	54				ENSGT00940000177133	ENSGT00390000005914.a	ENSGT00940000158209	ENSGT00940000154474.A	ENSGT00940000154474.B.a	ENSGT00940000154474.B.b	ENSGT00940000157694	ENSGT00940000154505.A.c	ENSGT00940000160000	ENSGT00390000018525.a.b.f	ENSGT00940000165332.C	ENSGT00940000164059	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT00530000063558.A.c.b	ENSGT00530000063503.a.a.a	ENSGT00940000157308.h	ENSGT00390000002143.b.b #21	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00390000008846
Mangrove rivulus	MODERN SPECIES	952														ENSKMAG00000011850	f2 (ENSKMAG00000011891)	dnajc27 (ENSKMAG00000011954) #22
Turquoise killifish	MODERN SPECIES	1619	INHBB (ENSNFUG00015015055)	GLI2 (ENSNFUG00015015102)	CLASP1 (ENSNFUG00015015312)	ENSNFUG00015016235	creg1 (ENSNFUG00015016242)	ENSNFUG00015016252	f7l (ENSNFUG00015016260)	f7 (ENSNFUG00015016264)	f7i (ENSNFUG00015016273)	f10 (ENSNFUG00015016294)	prozb (ENSNFUG00015016320)	ENSNFUG00015016350	ENSNFUG00015016356	ENSNFUG00015016379	F2 (ENSNFUG00015016401)	DNAJC27 (ENSNFUG00015016576) #22	ENSNFUG00015016580	XDH (ENSNFUG00015016650)	Nfu_g_1_022357 (ENSNFUG00015017116)	mid1ip1b (ENSNFUG00015017126)	bcor (ENSNFUG00015017132)	ENSNFUG00015017151	ENSNFUG00015017156	abi3bpb (ENSNFUG00015017166)	ENSNFUG00015017262	EFR3BA (ENSNFUG00015004705)	EFR3B (ENSNFUG00015004750) #21	IQCB1 (ENSNFUG00015004806)	BCMO1B (ENSNFUG00015005139)	LIPT1 (ENSNFUG00015005302)	ENSNFUG00015005310
Cyprinodontoidei	ANCESTRAL SPECIES	53																ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT00390000005581.a	ENSGT00940000159169	ENSGT00530000063558.A.c.b	ENSGT00530000063503.a.a.a	ENSGT00530000063503.b	ENSGT00940000178125	ENSGT00940000157308.h	ENSGT00530000063564.b.a.a	ENSGT00530000063564.b.b.a	ENSGT00950000183138.a.b.r.a
Poeciliinae	ANCESTRAL SPECIES	34	ENSGT00940000154095.b.b.a.a	ENSGT00390000003164	ENSGT00940000155522.g.b	ENSGT00390000016940.c.b.b	ENSGT00950000182905.a.a.a.a.a.b	ENSGT00390000007225	ENSGT00390000016811.g.h #20	ENSGT00940000154365.a.b	ENSGT00940000154793.C	ENSGT00390000007364.j	ENSGT00940000155984.i.b	ENSGT00940000159862.b	ENSGT00940000159213.q.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000158265	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT01100000263489.a.a.b.a.a.b.b.b.b.a.a	ENSGT00390000005581.a	ENSGT00940000159169	ENSGT00530000063558.A.c.b	ENSGT00530000063503.a.a.a	ENSGT00530000063503.b	ENSGT00940000178125	ENSGT00940000157308.h	ENSGT00530000063564.b.a.a	ENSGT00530000063564.b.b.a
Platyfish	MODERN SPECIES	16	ENSXMAG00000012859	ENSXMAG00000021308	dph3 (ENSXMAG00000006409)	pomca (ENSXMAG00000024752) #20	gbx2 (ENSXMAG00000022618)	AGAP1 (ENSXMAG00000006413)	ENSXMAG00000024560	INHBB (ENSXMAG00000022566)	ENSXMAG00000026222	gli2b (ENSXMAG00000006443)	ENSXMAG00000021252	ENSXMAG00000026049	ENSXMAG00000000776	clcn4 (ENSXMAG00000000799)	ENSXMAG00000028697	dnajc27 (ENSXMAG00000003407) #22	ENSXMAG00000003420	XDH (ENSXMAG00000003461)	tspan7b (ENSXMAG00000003562)	mid1ip1b (ENSXMAG00000020387)	bcor (ENSXMAG00000012802)	ENSXMAG00000026275	ENSXMAG00000029255	ENSXMAG00000026881	ENSXMAG00000028990	ENSXMAG00000024503	ENSXMAG00000021664	ftcd (ENSXMAG00000005927)	ENSXMAG00000005968	abi3bpb (ENSXMAG00000005976)	ENSXMAG00000029304
Poecilia	ANCESTRAL SPECIES	27	ENSGT00940000154095.b.b.a.a	ENSGT00390000003164	ENSGT00940000155522.g.b	ENSGT00390000016940.c.b.b	ENSGT00950000182905.a.a.a.a.a.b	ENSGT00390000007225	ENSGT00390000016811.g.h #20	ENSGT00940000154365.a.b	ENSGT00940000154793.C	ENSGT00390000007364.j	ENSGT00940000155984.i.b	ENSGT00940000159862.b	ENSGT00940000159213.q.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000158265	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f	ENSGT00940000153737.b.g.a	ENSGT01100000263489.a.a.b.a.a.b.b.b.b.a.a	ENSGT00390000005581.a	ENSGT00940000159169	ENSGT00530000063558.A.c.b	ENSGT00530000063503.a.a.a	ENSGT00530000063503.b	ENSGT00940000157308.h	ENSGT00530000063564.b.a.a	ENSGT00950000183138.a.b.r.a	ENSGT01090000260051.b.b.dc.a
Guppy	MODERN SPECIES	450	ENSPREG00000009722	ildr2 (ENSPREG00000009751)	ildr1b (ENSPREG00000009773)	me3 (ENSPREG00000009844)	nxpe3 (ENSPREG00000009934)	ENSPREG00000009941	ENSPREG00000009971	rpl24 (ENSPREG00000009982)	mpc2b (ENSPREG00000010013)	dcaf6 (ENSPREG00000010047)	gpr161b (ENSPREG00000010136)	OTC (ENSPREG00000010161)	ENSPREG00000010180	srpx (ENSPREG00000010207)	ENSPREG00000010217	dnajc27 (ENSPREG00000010228) #22	ENSPREG00000010260	ENSPREG00000010294	tspan7b (ENSPREG00000010316)	mid1ip1b (ENSPREG00000010338)	ENSPREG00000010356	ENSPREG00000010370	ENSPREG00000010378	ENSPREG00000010382	ENSPREG00000010393	ftcd (ENSPREG00000010410)	ENSPREG00000010466	ENSPREG00000010478	ENSPREG00000010500	senp7b (ENSPREG00000010522)	ENSPREG00000010581
NAME_6	ANCESTRAL SPECIES	324							ENSGT00390000007225	ENSGT00390000016811.g.h #20	ENSGT00940000154365.a.b	ENSGT00940000154793.C	ENSGT00390000007364.j	ENSGT00940000155984.i.b	ENSGT00940000159862.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000158265	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f
Amazon molly	MODERN SPECIES	516		ENSPFOG00000024498	dph3 (ENSPFOG00000004226)	pomca (ENSPFOG00000004254) #20	gbx2 (ENSPFOG00000004268)	AGAP1 (ENSPFOG00000004340)	faimb (ENSPFOG00000004988)	ENSPFOG00000005056	INHBB (ENSPFOG00000005088)	ENSPFOG00000005116	CLASP1 (ENSPFOG00000005373)	clcn4 (ENSPFOG00000006075)	ENSPFOG00000006206	ENSPFOG00000006222	ENSPFOG00000006324	dnajc27 (ENSPFOG00000006335) #22	ENSPFOG00000006456	XDH (ENSPFOG00000006876)	tspan7b (ENSPFOG00000007487)	mid1ip1b (ENSPFOG00000020004)
Sailfin molly	MODERN SPECIES	396				dph3 (ENSPLAG00000009140)	pomca (ENSPLAG00000009124) #20	gbx2 (ENSPLAG00000009111)	AGAP1 (ENSPLAG00000009106)	faimb (ENSPLAG00000009030)	ENSPLAG00000008996	INHBB (ENSPLAG00000008988)	ENSPLAG00000008979	ENSPLAG00000008947	ENSPLAG00000008890	clcn4 (ENSPLAG00000000184)	ENSPLAG00000008856	dnajc27 (ENSPLAG00000008845) #22	ENSPLAG00000008821	XDH (ENSPLAG00000008793)	tspan7b (ENSPLAG00000008677)	mid1ip1b (ENSPLAG00000008599)
NAME_4	ANCESTRAL SPECIES	404																ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000156153.y.b	ENSGT00940000153737.b.g.a	ENSGT01030000235020
Mummichog	MODERN SPECIES	1041																dnajc27 (ENSFHEG00000001747) #22	XDH (ENSFHEG00000009791)	ENSFHEG00000010248	ENSFHEG00000010289	ENSFHEG00000010300
Sheepshead minnow	MODERN SPECIES	1750																dnajc27 (ENSCVAG00000012741) #22	ENSCVAG00000012724	XDH (ENSCVAG00000000824)	tspan7b (ENSCVAG00000012693)	ENSCVAG00000012683
Pinecone sodierfish	MODERN SPECIES	11	kalrnb (ENSMMDG00005018336)	cdk5r2a (ENSMMDG00005018309)	ENSMMDG00005017535	ENSMMDG00005017506	vps16 (ENSMMDG00005014504)	rgn (ENSMMDG00005014427)	zgc:112023 (ENSMMDG00005014399)	cavin2b (ENSMMDG00005014394)	ebpl (ENSMMDG00005014393)	arl11 (ENSMMDG00005014389)	eef1b2 (ENSMMDG00005014373)	ENSMMDG00005014368	ENSMMDG00005014363	creg1 (ENSMMDG00005014361)	ENSMMDG00005014356	dnajc27 (ENSMMDG00005014350) #22	ENSMMDG00005014142	XDH (ENSMMDG00005010800)	tspan7b (ENSMMDG00005010718)	ENSMMDG00005010717	ENSMMDG00005010716	ENSMMDG00005010714	ENSMMDG00005010713	ENSMMDG00005010710	ENSMMDG00005010707	ENSMMDG00005010706	ENSMMDG00005010702	ENSMMDG00005010696	ENSMMDG00005010693	abi3bpb (ENSMMDG00005010684)	ENSMMDG00005010680
Cod	MODERN SPECIES	17	ENSGMOG00000016353	stat1a (ENSGMOG00000012431)	ENSGMOG00000023064	ENSGMOG00000028906	ENSGMOG00000031280	ENSGMOG00000028263	ENSGMOG00000027536	ENSGMOG00000027687	ENSGMOG00000033090	ENSGMOG00000022259	f10 (ENSGMOG00000005915)	ENSGMOG00000024014	f7l (ENSGMOG00000031577)	ENSGMOG00000023526	ENSGMOG00000005802	ENSGMOG00000002595 #22	ENSGMOG00000012640	ENSGMOG00000031047	ENSGMOG00000012701	ENSGMOG00000034014	ENSGMOG00000025374	ENSGMOG00000024091	ENSGMOG00000037069	ENSGMOG00000012844	ENSGMOG00000028437	ENSGMOG00000000107	ENSGMOG00000001754	ENSGMOG00000022736	ENSGMOG00000030726	ENSGMOG00000015929	ENSGMOG00000010602
Protacanthopterygii	ANCESTRAL SPECIES	185						ENSGT00940000157269.a.b	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g #20	ENSGT00390000016811.h #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133 #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1034													ENSGT00390000016811.g.e #20	ENSGT00390000016811.h #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133.e #22	ENSGT00950000183114.a.a
Huchen	MODERN SPECIES	1828										ENSHHUG00000021281	marveld1 (ENSHHUG00000021289)	pi4k2a (ENSHHUG00000021295)	ENSHHUG00000021335	ENSHHUG00000021420	slc25a28 (ENSHHUG00000021446)	dnajc27 (ENSHHUG00000021468) #22
Salmoninae_a	ANCESTRAL SPECIES	62	ENSGT01030000234996	ENSGT00940000154242.a.c.f	ENSGT00390000005345	ENSGT00390000004923.C	ENSGT00940000158687.a.b.e	ENSGT00940000156634.b.h.b	ENSGT00940000158614.l	ENSGT00940000158299.b	ENSGT00940000157269.a.b	ENSGT00940000154607.a.d	ENSGT00510000048137.i	ENSGT00940000175756.b	ENSGT00390000016811.g.e #20	ENSGT00390000016811.h #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133.e #22	ENSGT00950000183114.a.a	ENSGT01100000263495.E.m.a.b.a	ENSGT01100000264076.A.a	ENSGT00940000154071.A.h.b	ENSGT00950000183148.a.a.b	ENSGT00940000165086.a	ENSGT00660000095541.a.b.c.a.b.b.b	ENSGT00940000156106.h	ENSGT00940000158704.f	ENSGT00940000158072.h	ENSGT00940000159132.a	ENSGT00940000156502	ENSGT00490000043421	ENSGT00940000158324.e	ENSGT00390000004717
Oncorhynchus	ANCESTRAL SPECIES	60	ENSGT00950000182863.B.b.h	ENSGT01030000234996	ENSGT00940000154242.a.c.f	ENSGT00390000005345	ENSGT00390000004923.C	ENSGT00940000158687.a.b.e	ENSGT00940000156634.b.h.b	ENSGT00940000158614.l	ENSGT00940000158299.b	ENSGT00940000157269.a.b	ENSGT00940000154607.a.d	ENSGT00510000048137.i	ENSGT00940000175756.b	ENSGT00390000016811.g.e #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133.e #22	ENSGT00950000183114.a.a	ENSGT01100000263495.E.m.a.b.a	ENSGT01100000264076.A.a	ENSGT00940000154071.A.h.b	ENSGT00950000183148.a.a.b	ENSGT00940000165086.a	ENSGT00660000095541.a.b.c.a.b.b.b	ENSGT00940000156106.h	ENSGT00940000158704.f	ENSGT00940000158072.h	ENSGT00940000159132.a	ENSGT00940000156502	ENSGT00490000043421	ENSGT00940000158324.e	ENSGT00390000004717
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000014410	ENSOMYG00000014413	ENSOMYG00000069804	ENSOMYG00000014422	ENSOMYG00000014436	plaat1l (ENSOMYG00000051314)	ephx2 (ENSOMYG00000014450)	chrna2a (ENSOMYG00000076962)	ENSOMYG00000059755	ENSOMYG00000014470	ENSOMYG00000076781	ENSOMYG00000014480	ENSOMYG00000069239	pomca (ENSOMYG00000014502) #20	ENSOMYG00000055861 #21	dnajc27 (ENSOMYG00000074771) #22	ENSOMYG00000074973	ENSOMYG00000050729	ENSOMYG00000069829	ENSOMYG00000073579	ENSOMYG00000050549	ENSOMYG00000072445	ENSOMYG00000077313	ENSOMYG00000014544	ENSOMYG00000073971	trim9 (ENSOMYG00000024311)	pygl (ENSOMYG00000014642)	ENSOMYG00000015041	NIN (ENSOMYG00000015170)	sav1 (ENSOMYG00000015163)	atl1 (ENSOMYG00000015151)
Oncorhynchus_a	ANCESTRAL SPECIES	70	ENSGT00950000182863.B.b.h	ENSGT01030000234996	ENSGT00940000154242.a.c.f	ENSGT00390000005345	ENSGT00390000004923.C	ENSGT00940000158687.a.b.e	ENSGT00940000156634.b.h.b	ENSGT00940000158614.l	ENSGT00940000158299.b	ENSGT00940000157269.a.b	ENSGT00940000154607.a.d	ENSGT00510000048137.i	ENSGT00940000159969.b.a.b	ENSGT00390000016811.g.e #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133.e #22	ENSGT00950000183114.a.a	ENSGT00940000154071.A.h.b	ENSGT00950000183148.a.a.b	ENSGT00940000165086.a	ENSGT00660000095541.a.b.c.a.b.b.b	ENSGT00940000156106.h	ENSGT00940000158704.f	ENSGT00940000158072.h	ENSGT00940000159132.a	ENSGT00940000156502	ENSGT00490000043421	ENSGT00940000158324.e	ENSGT00390000004717	ENSGT00950000182834.A.a.a.d.a	ENSGT00390000008920.c.a
Coho salmon	MODERN SPECIES	27	ENSOKIG00005002137	ENSOKIG00005002176	ENSOKIG00005002239	plaat1l (ENSOKIG00005002266)	ephx2 (ENSOKIG00005002318)	chrna2a (ENSOKIG00005002385)	ENSOKIG00005002431	ENSOKIG00005002463	ENSOKIG00005002478	SH3YL1 (ENSOKIG00005002486)	ENSOKIG00005002497	ENSOKIG00005002507	pomca (ENSOKIG00005002514) #20	EFR3B (ENSOKIG00005002729) #21	ENSOKIG00005003693	dnajc27 (ENSOKIG00005003701) #22	ENSOKIG00005003712	XDH (ENSOKIG00005004002)	ENSOKIG00005009434	trim9 (ENSOKIG00005009443)	pygl (ENSOKIG00005009568)	ENSOKIG00005010464	NIN (ENSOKIG00005010479)	sav1 (ENSOKIG00005010521)	atl1 (ENSOKIG00005010550)	map4k5 (ENSOKIG00005011002)	cdkl1 (ENSOKIG00005014097)	ENSOKIG00005014118	dmac2l (ENSOKIG00005014127)	l2hgdh (ENSOKIG00005014142)	sos2 (ENSOKIG00005014205)
Chinook salmon	MODERN SPECIES	2	wdr35 (ENSOTSG00005003482)	matn3b (ENSOTSG00005003512)	ENSOTSG00005003516	ENSOTSG00005003520	HPCAL1 (ENSOTSG00005003526)	khk (ENSOTSG00005003542)	ANKEF1 (ENSOTSG00005003546)	ENSOTSG00005003560	ENSOTSG00005003565	ENSOTSG00005003566	ENSOTSG00005003573	chrna2a (ENSOTSG00005003581)	ENSOTSG00005003583	ENSOTSG00005003586	SH3YL1 (ENSOTSG00005003588)	dnajc27 (ENSOTSG00005003589) #22	XDH (ENSOTSG00005003659)	sos2 (ENSOTSG00005003827)	l2hgdh (ENSOTSG00005004938)	dmac2l (ENSOTSG00005004939)	cdkl1 (ENSOTSG00005004940)	map4k5 (ENSOTSG00005004942)	ENSOTSG00005004944	sav1 (ENSOTSG00005004948)	ENSOTSG00005004952	ENSOTSG00005004958	lgmn (ENSOTSG00005004963)	chp1 (ENSOTSG00005004982)	ENSOTSG00005004983	nusap1 (ENSOTSG00005004985)	ndufaf1 (ENSOTSG00005004988)
Salmo	ANCESTRAL SPECIES	8	ENSGT00950000182863.B.b.h	ENSGT01030000234996	ENSGT00940000154242.a.c.f	ENSGT00390000005345	ENSGT00390000004923.C	ENSGT00940000158687.a.b.e	ENSGT00940000156634.b.h.b	ENSGT00940000158614.l	ENSGT00940000158299.b	ENSGT00940000157269.a.b	ENSGT00940000154607.a.d	ENSGT00510000048137.i	ENSGT00940000162505.b.e	ENSGT00390000016811.g.e #20	ENSGT00390000002143.b.a #21	ENSGT00940000157133.e #22	ENSGT00950000183114.a.a	ENSGT01100000263495.E.m.a.b.a	ENSGT01100000264076.A.a	ENSGT00940000154071.A.h.b	ENSGT00950000183148.a.a.b	ENSGT00940000165086.a	ENSGT00660000095541.a.b.c.a.a	ENSGT00940000156106.h	ENSGT00940000158704.f	ENSGT00940000158072.h	ENSGT00940000159132.a	ENSGT00940000156502	ENSGT00490000043421	ENSGT00940000158324.e	ENSGT00940000161621.A.a.b.b.b.a.b.g.b
Atlantic salmon	MODERN SPECIES		ENSSSAG00000070782	ENSSSAG00000103497	ENSSSAG00000109568	ENSSSAG00000121022	plaat1l (ENSSSAG00000035519)	ephx2 (ENSSSAG00000035097)	chrna2a (ENSSSAG00000037181)	ENSSSAG00000115052	ENSSSAG00000034575	ENSSSAG00000120676	ENSSSAG00000034886	alkal2b (ENSSSAG00000034188)	ENSSSAG00000036357	pomca (ENSSSAG00000070765) #20	ENSSSAG00000070629 #21	dnajc27 (ENSSSAG00000112028) #22	ENSSSAG00000106554	ENSSSAG00000039639	ENSSSAG00000083748	ENSSSAG00000116603	ENSSSAG00000107292	ENSSSAG00000058229	trim9 (ENSSSAG00000104684)	pygl (ENSSSAG00000036264)	ENSSSAG00000093779	NIN (ENSSSAG00000053915)	ENSSSAG00000092315	sav1 (ENSSSAG00000053919)	atl1 (ENSSSAG00000053952)	map4k5 (ENSSSAG00000055072)	cdkl1 (ENSSSAG00000099783)
River trout	MODERN SPECIES	26	ENSSTUG00000017107	ENSSTUG00000017127	ENSSTUG00000017206	ZNF513 (ENSSTUG00000017224)	plaat1l (ENSSTUG00000017243)	ephx2 (ENSSTUG00000017252)	chrna2a (ENSSTUG00000017278)	ENSSTUG00000017335	ENSSTUG00000018425	SH3YL1 (ENSSTUG00000018438)	alkal2b (ENSSTUG00000018465)	ENSSTUG00000018470	pomca (ENSSTUG00000018477) #20	EFR3B (ENSSTUG00000018507) #21	ENSSTUG00000018940	dnajc27 (ENSSTUG00000018946) #22	XDH (ENSSTUG00000019052)	ENSSTUG00000020969	ENSSTUG00000020978	ENSSTUG00000020986	trim9 (ENSSTUG00000021008)	pygl (ENSSTUG00000021153)	ENSSTUG00000024715	NIN (ENSSTUG00000024735)	sav1 (ENSSTUG00000024886)	atl1 (ENSSTUG00000024916)	ENSSTUG00000026264	map4k5 (ENSSTUG00000026301)	cdkl1 (ENSSTUG00000026888)	dmac2l (ENSSTUG00000026914)	l2hgdh (ENSSTUG00000026923)
Salmoninae	ANCESTRAL SPECIES	337						ENSGT00940000158687.a.b.f	ENSGT00940000156634.b.h.a	ENSGT00940000158614.k	ENSGT00940000160303.a.b	ENSGT00940000154607.a.c	ENSGT00510000048137.j	ENSGT00940000162505.b.f	ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g.f #20	ENSGT00940000157133.f #22	ENSGT00940000166718.d	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a.b.b	ENSGT00940000154071.A.h.a	ENSGT00950000183148.a.a.a	ENSGT00660000095541.a.b.c.b	ENSGT00940000156106.g	ENSGT00940000158704.e	ENSGT00940000158072.g	ENSGT00940000158324.f.a	ENSGT00950000182834.A.a.a.d.b	ENSGT00940000157224.ab	ENSGT00830000128402	ENSGT00940000164487.e
Huchen	MODERN SPECIES	8053															pomca (ENSHHUG00000023323) #20	dnajc27 (ENSHHUG00000023334) #22	ENSHHUG00000023341
Salmoninae_a	ANCESTRAL SPECIES	8	ENSGT00940000158104	ENSGT00950000182863.B.b.g	ENSGT01080000257881.a	ENSGT00940000158687.a.b.f	ENSGT00940000156634.b.h.a	ENSGT00940000158614.k	ENSGT00940000160303.a.b	ENSGT00940000154607.a.c	ENSGT00510000048137.j	ENSGT00940000162505.b.f	ENSGT00940000175756.a	ENSGT00950000182963.a.a.c	ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g.f #20	ENSGT00940000157133.f #22	ENSGT00940000166718.d	ENSGT01030000234555.a.b.f.b	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a.b.b	ENSGT00940000154071.A.h.a	ENSGT00950000183148.a.a.a	ENSGT00660000095541.a.b.c.b	ENSGT00940000156106.g	ENSGT00940000158704.e	ENSGT00940000158072.g	ENSGT00940000158324.f.a	ENSGT00950000182834.A.a.a.d.b	ENSGT00940000157224.ab	ENSGT00830000128402.a.b
Oncorhynchus	ANCESTRAL SPECIES	54	ENSGT00940000158104	ENSGT00950000182863.B.b.g	ENSGT01080000257881.a	ENSGT00940000158687.a.b.f	ENSGT00940000156634.b.h.a	ENSGT00940000158614.k	ENSGT00940000160303.a.b	ENSGT00940000154607.a.c	ENSGT00510000048137.j	ENSGT00940000162505.b.f	ENSGT00940000175756.a	ENSGT00950000182963.a.a.c	ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g.f #20	ENSGT00940000157133.f #22	ENSGT00940000166718.c.a.a	ENSGT01030000234555.a.b.f.b	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a.b.b	ENSGT00940000154071.A.h.a	ENSGT00950000183148.a.a.a	ENSGT00660000095541.a.b.c.b	ENSGT00940000156106.g	ENSGT00940000158704.e	ENSGT00940000158072.g	ENSGT00940000158324.f.a	ENSGT00950000182834.A.a.a.d.b
Rainbow trout	MODERN SPECIES	17	ENSOMYG00000060584	ENSOMYG00000074436	ENSOMYG00000030419	ENSOMYG00000030448	ENSOMYG00000030516	ENSOMYG00000049478	ENSOMYG00000030527	ENSOMYG00000068475	ENSOMYG00000024116	ENSOMYG00000060170	ENSOMYG00000077839	ENSOMYG00000052264	snx9a (ENSOMYG00000073053)	ENSOMYG00000057712	pomca (ENSOMYG00000048731) #20	dnajc27 (ENSOMYG00000049044) #22	ENSOMYG00000072083	ENSOMYG00000065975	ENSOMYG00000066811	ENSOMYG00000030619	ENSOMYG00000051910	ENSOMYG00000030565	ENSOMYG00000024326	pygl (ENSOMYG00000024285)	NIN (ENSOMYG00000057487)	ENSOMYG00000074814	sav1 (ENSOMYG00000024232)	atl1 (ENSOMYG00000024221)	map4k5 (ENSOMYG00000052517)	ENSOMYG00000049088	cnih1 (ENSOMYG00000024376)
Oncorhynchus_a	ANCESTRAL SPECIES	60	ENSGT00940000160421.i.g	ENSGT00940000160421.i.h.a	ENSGT00940000158104	ENSGT00950000182863.B.b.g	ENSGT00940000154242.a.d	ENSGT00940000158687.a.b.f	ENSGT00940000156634.b.h.a	ENSGT00940000158614.k	ENSGT00940000160303.a.b	ENSGT00940000154607.a.c	ENSGT00510000048137.j	ENSGT00940000162505.b.f	ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g.f #20	ENSGT00940000157133.f #22	ENSGT00940000166718.c.a.a	ENSGT01030000234555.a.b.f.b	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a.b.b	ENSGT00940000154071.A.h.a	ENSGT00950000183148.a.a.a	ENSGT00660000095541.a.b.c.b	ENSGT00940000156106.g	ENSGT00940000158704.e	ENSGT00940000158072.g
Coho salmon	MODERN SPECIES	5	sntg2 (ENSOKIG00005008812)	ENSOKIG00005008788	ENSOKIG00005008769	ENSOKIG00005008754	ENSOKIG00005008735	ENSOKIG00005008701	ENSOKIG00005008695	ENSOKIG00005008667	ENSOKIG00005008491	ENSOKIG00005008438	alkal2b (ENSOKIG00005008431)	ENSOKIG00005008427	snx9a (ENSOKIG00005008030)	ENSOKIG00005007988	pomca (ENSOKIG00005007948) #20	dnajc27 (ENSOKIG00005007784) #22	ENSOKIG00005007655	ENSOKIG00005007627	ENSOKIG00005007618	ENSOKIG00005007607	ENSOKIG00005007596	SMYD2 (ENSOKIG00005007510)	trim9 (ENSOKIG00005007454)	pygl (ENSOKIG00005004611)	ENSOKIG00005004181	NIN (ENSOKIG00005014194)	sav1 (ENSOKIG00005014189)	atl1 (ENSOKIG00005014178)	map4k5 (ENSOKIG00005011988)	ENSOKIG00005011742	cnih1 (ENSOKIG00005011694)
Salmo	ANCESTRAL SPECIES	11	ENSGT00940000158104	ENSGT00950000182863.B.b.g	ENSGT01080000257881.a	ENSGT00940000158687.a.b.f	ENSGT00940000156634.b.h.a	ENSGT00940000158614.k	ENSGT00940000160303.a.b	ENSGT00940000154607.a.c	ENSGT00510000048137.j	ENSGT00940000162505.b.f	ENSGT00940000175756.a	ENSGT00950000182963.a.a.c	ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g.f #20	ENSGT00940000157133.f #22	ENSGT00940000166718.d	ENSGT01030000234555.a.b.f.b	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a.b.b	ENSGT00940000154071.A.h.a	ENSGT00950000183148.a.a.a	ENSGT00660000095541.a.b.c.b	ENSGT00940000156106.g	ENSGT00940000158704.e	ENSGT00940000158072.g	ENSGT00940000158324.f.b.a	ENSGT00950000182834.A.a.a.d.b	ENSGT00940000157224.ab	ENSGT00830000128402.a.b
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000003924	ENSSSAG00000003919	ENSSSAG00000105423	ENSSSAG00000004970	ENSSSAG00000004951	ENSSSAG00000107339	ENSSSAG00000004933	ENSSSAG00000004919	ENSSSAG00000113067	alkal2b (ENSSSAG00000114050)	ENSSSAG00000095726	ENSSSAG00000108119	snx9a (ENSSSAG00000070769)	ENSSSAG00000083622	pomca (ENSSSAG00000095078) #20	dnajc27 (ENSSSAG00000118648) #22	ENSSSAG00000004795	ENSSSAG00000095109	ENSSSAG00000064209	ccdc28a (ENSSSAG00000064213)	ENSSSAG00000104417	ENSSSAG00000095709	trim9 (ENSSSAG00000034367)	pygl (ENSSSAG00000049653)	NIN (ENSSSAG00000118026)	sav1 (ENSSSAG00000103444)	atl1 (ENSSSAG00000049174)	map4k5 (ENSSSAG00000040875)	ENSSSAG00000099814	ENSSSAG00000039308	ENSSSAG00000082438
River trout	MODERN SPECIES	17	TPO (ENSSTUG00000021961)	sntg2 (ENSSTUG00000021852)	ENSSTUG00000021839	ENSSTUG00000021835	ENSSTUG00000021820	plaat1l (ENSSTUG00000021786)	ephx2 (ENSSTUG00000021689)	ENSSTUG00000021671	ENSSTUG00000021660	ENSSTUG00000021629	alkal2b (ENSSTUG00000021619)	ENSSTUG00000021615	snx9a (ENSSTUG00000021494)	ENSSTUG00000021471	pomca (ENSSTUG00000021457) #20	dnajc27 (ENSSTUG00000021420) #22	ENSSTUG00000019850	ENSSTUG00000019786	ENSSTUG00000019782	ENSSTUG00000019762	ccdc28a (ENSSTUG00000019752)	smyd2a (ENSSTUG00000019459)	ENSSTUG00000029809	trim9 (ENSSTUG00000029728)	ENSSTUG00000029715	pygl (ENSSTUG00000028417)	NIN (ENSSTUG00000028323)	sav1 (ENSSTUG00000028304)	atl1 (ENSSTUG00000026893)	map4k5 (ENSSTUG00000026047)	ENSSTUG00000025968
Northern pike	MODERN SPECIES	14	ENSELUG00000017940	ENSELUG00000018061	ENSELUG00000018095	ENSELUG00000018118	SH3YL1 (ENSELUG00000018153)	ENSELUG00000000750	ENSELUG00000018186	ENSELUG00000000759	ENSELUG00000018197	ENSELUG00000026497	snx9a (ENSELUG00000018211)	ENSELUG00000018221	pomca (ENSELUG00000018258) #20	EFR3B (ENSELUG00000018320) #21	ENSELUG00000019174	dnajc27 (ENSELUG00000019264) #22	ENSELUG00000019292	XDH (ENSELUG00000019382)	ENSELUG00000029307	ENSELUG00000029959	ENSELUG00000019414	ENSELUG00000019487	ccdc28a (ENSELUG00000019504)	ENSELUG00000026820	ENSELUG00000031575	smyd2a (ENSELUG00000019543)	ENSELUG00000027863	ENSELUG00000019555	ENSELUG00000019571	ENSELUG00000026521	trim9 (ENSELUG00000019700)
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	321															ENSGT00390000002143.b.a.y #21	ENSGT00940000157133.g #22	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00390000003188.d	ENSGT00530000063651.a.b	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000162166	ENSGT00390000010210	ENSGT00940000157172	ENSGT00940000178326	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000162505.b
Asian bonytongue	MODERN SPECIES	6	ENSSFOG00015026806	CTSB (ENSSFOG00015018040)	CTSB (ENSSFOG00015018007)	ENSSFOG00015029860	KCNK2 (ENSSFOG00015017981)	CENPF (ENSSFOG00015017861)	ENSSFOG00015017829	ENSSFOG00015017813	ENSSFOG00015024296	smyd2a (ENSSFOG00015017786)	prox1a (ENSSFOG00015017766)	snx9a (ENSSFOG00015017714)	ENSSFOG00015017694	pomca (ENSSFOG00015017610) #20	EFR3B (ENSSFOG00015017545) #21	dnajc27 (ENSSFOG00015025414) #22	ENSSFOG00015017449	XDH (ENSSFOG00015017156)	lin9 (ENSSFOG00015017101)	zgc:162964 (ENSSFOG00015017080)	ECT2L (ENSSFOG00015017030)	ccdc28a (ENSSFOG00015016999)	NHSL1 (ENSSFOG00015016946)	cmtr1 (ENSSFOG00015016868)	ENSSFOG00015024515	SH3YL1 (ENSSFOG00015016778)	alkal2b (ENSSFOG00015016768)	tmem18 (ENSSFOG00015031498)	TRERF1 (ENSSFOG00015016620)	PTK2B (ENSSFOG00015016572)	chrna2a (ENSSFOG00015016535)
P. kingsleyae	MODERN SPECIES	499															EFR3B (ENSPKIG00000004970) #21	dnajc27 (ENSPKIG00000005039) #22	XDH (ENSPKIG00000005109)	lin9 (ENSPKIG00000005266)	ENSPKIG00000005319	ENSPKIG00000005343	ECT2L (ENSPKIG00000005402)	ccdc28a (ENSPKIG00000005494)	NHSL1 (ENSPKIG00000005550)	cmtr1 (ENSPKIG00000005638)	ENSPKIG00000005771	FAM110C (ENSPKIG00000005792)	SH3YL1 (ENSPKIG00000005826)	alkal2b (ENSPKIG00000005879)
Osteoglossiformes	ANCESTRAL SPECIES	4	ENSGT00940000158680.i	ENSGT00940000165866	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h	ENSGT00940000156874.d	ENSGT00940000157082	ENSGT00940000154790.a.a.b.d	ENSGT00940000155656.s	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041	ENSGT00390000016811.g #20	ENSGT00390000016811.h #20	ENSGT00390000002143.b.a.z #21	ENSGT00940000157133.h #22	ENSGT00940000156058	ENSGT01030000234555.a.b.f.a	ENSGT00390000003188.c	ENSGT00940000162190	ENSGT00530000063651.a.a.a	ENSGT00390000017888	ENSGT00390000004915.b	ENSGT00950000183056.A.b.a	ENSGT00940000158351	ENSGT00940000162505.a	ENSGT01100000263595	ENSGT00550000074816.A.a	ENSGT00940000159266	ENSGT01060000249589	ENSGT00530000063712.a.b
P. kingsleyae	MODERN SPECIES	83	ctsba (ENSPKIG00000004874)	ENSPKIG00000004948	ENSPKIG00000005034	ABHD1 (ENSPKIG00000005093)	ENSPKIG00000005139	kcnk2b (ENSPKIG00000005197)	PTPN14 (ENSPKIG00000005280)	SMYD2 (ENSPKIG00000005433)	prox1a (ENSPKIG00000005483)	RPS6KC1 (ENSPKIG00000005516)	ENSPKIG00000005536	SNX9 (ENSPKIG00000005581)	ENSPKIG00000005689	pomcb (ENSPKIG00000005704) #20	EFR3B (ENSPKIG00000005768) #21	DNAJC27 (ENSPKIG00000005931) #22	parp1 (ENSPKIG00000006039)	ENSPKIG00000006167	lin9 (ENSPKIG00000006192)	mixl1 (ENSPKIG00000006218)	acbd3 (ENSPKIG00000006236)	NHSL1 (ENSPKIG00000006273)	ENSPKIG00000006314	ENSPKIG00000006329	fbxo25 (ENSPKIG00000006352)	FAM110C (ENSPKIG00000006382)	ENSPKIG00000006398	ENSPKIG00000006478	ACP1 (ENSPKIG00000006517)	alkal2a (ENSPKIG00000006569)	ENSPKIG00000006583
Asian bonytongue	MODERN SPECIES		ctsba (ENSSFOG00015000111)	ENSSFOG00015000074	ENSSFOG00015030051	ABHD1 (ENSSFOG00015000067)	ENSSFOG00015020648	kcnk2b (ENSSFOG00015020640)	PTPN14 (ENSSFOG00015030086)	SMYD2 (ENSSFOG00015020598)	prox1a (ENSSFOG00015020586)	rps6kc1 (ENSSFOG00015020535)	ENSSFOG00015020491	SNX9 (ENSSFOG00015020430)	ENSSFOG00015020337	pomcb (ENSSFOG00015020172) #20	EFR3B (ENSSFOG00015020097) #21	DNAJC27 (ENSSFOG00015020074) #22	parp1 (ENSSFOG00015020017)	ENSSFOG00015020065	lin9 (ENSSFOG00015019943)	mixl1 (ENSSFOG00015029811)	acbd3 (ENSSFOG00015019907)	NHSL1 (ENSSFOG00015019880)	hebp2 (ENSSFOG00015019865)	KIF25 (ENSSFOG00015019835)	ccdc167 (ENSSFOG00015033255)	ENSSFOG00015019778	fbxo25 (ENSSFOG00015019748)	FAM110C (ENSSFOG00015019719)	ACP1 (ENSSFOG00015019690)	alkal2a (ENSSFOG00015019674)	ENSSFOG00015024238
Spotted gar	MODERN SPECIES	647	ENSLOCG00000016728	plaat1l (ENSLOCG00000016725)	ENSLOCG00000016724	ENSLOCG00000016722	ENSLOCG00000016715	ephx2 (ENSLOCG00000016711)	CENPF (ENSLOCG00000016707)	PTPN14 (ENSLOCG00000016705)	smyd2a (ENSLOCG00000016700)	prox1a (ENSLOCG00000016698)	rps6kc1 (ENSLOCG00000016691)	snx9a (ENSLOCG00000016687)	ENSLOCG00000016685	pomcb (ENSLOCG00000016684) #20	EFR3B (ENSLOCG00000016682) #21	dnajc27 (ENSLOCG00000016679) #22	ENSLOCG00000016676	lpin1a (ENSLOCG00000016673)	ENSLOCG00000016669	rock2b (ENSLOCG00000016666)	ENSLOCG00000018006	si:dkey-18j18.3 (ENSLOCG00000016665)	ENSLOCG00000018005	kcnf1a (ENSLOCG00000018004)	pdia6 (ENSLOCG00000016663)	ATP6V1C2 (ENSLOCG00000016662)	nol10 (ENSLOCG00000016660)	odc1 (ENSLOCG00000016658)	hpcal1 (ENSLOCG00000016657)	ENSLOCG00000016655	hnrnpub (ENSLOCG00000016652)
Reedfish	MODERN SPECIES	11	NFASC (ENSECRG00000005189)	CNTN2 (ENSECRG00000005312)	ENSECRG00000005447	SCARA3 (ENSECRG00000005472)	clu (ENSECRG00000005490)	ENSECRG00000005511	ENSECRG00000005526	ENSECRG00000005541	lbr (ENSECRG00000005555)	enah (ENSECRG00000005597)	srp9 (ENSECRG00000005643)	snx9a (ENSECRG00000005661)	ENSECRG00000005691	pomca (ENSECRG00000005700) #20	EFR3B (ENSECRG00000005720) #21	dnajc27 (ENSECRG00000005769) #22	ADCY3 (ENSECRG00000005782) #24	ENSECRG00000005803	CENPO (ENSECRG00000005809) #25	ptrhd1 (ENSECRG00000005819) #26	fzd3a (ENSECRG00000005844)	nrbp1 (ENSECRG00000005874)	ENSECRG00000005901	ENSECRG00000005949	ZNF512 (ENSECRG00000006023)	gtf3c2 (ENSECRG00000006037)	slc30a2 (ENSECRG00000006061)	ENSECRG00000006083	mpv17 (ENSECRG00000006103)	uts1 (ENSECRG00000006115)	trim54 (ENSECRG00000008073)