Pecora	ANCESTRAL SPECIES	5	ENSGT00390000018634	ENSGT00940000155086.C #7	ENSGT00940000153804.A #8	ENSGT00950000183117.b #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #16	ENSGT00520000055578.a.b #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT00940000155936.b #27	ENSGT00940000164632.b	ENSGT00530000064185.b #28	ENSGT00530000064185.a #29	ENSGT00390000017067 #30	ENSGT00940000161217 #31	ENSGT00390000005908 #32	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660	ENSGT00390000005318.b.b.a #34	ENSGT00520000055567.a.b #35
Percora_a	ANCESTRAL SPECIES	13	ENSGT00390000018634	ENSGT00940000155086.C #7	ENSGT00940000153804.A #8	ENSGT00950000183117.b #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #16	ENSGT00520000055578.a.b #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT00940000155936.b.b #27	ENSGT00940000164632.b	ENSGT00530000064185.b #28	ENSGT00530000064185.a #29	ENSGT00390000017067 #30	ENSGT00940000161217 #31	ENSGT00390000005908 #32	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660	ENSGT00390000005318.b.b.a #34	ENSGT00520000055567.a.b #35
Bovidae	ANCESTRAL SPECIES	5	ENSGT00390000018634	ENSGT00940000155086.C #7	ENSGT00940000153804.A #8	ENSGT00950000183117.b #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #16	ENSGT00520000055578.a.b #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT00940000155936.b.b #27	ENSGT00940000164632.b	ENSGT00530000064185.b #28	ENSGT00530000064185.a #29	ENSGT00390000017067 #30	ENSGT00940000161217 #31	ENSGT00390000005908 #32	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660	ENSGT00390000005318.b.b.a #34	ENSGT00520000055567.a.b #35
Caprinae	ANCESTRAL SPECIES	9	ENSGT00390000018634	ENSGT00940000155086.C #7	ENSGT00940000153804.A #8	ENSGT00950000183117.b.bc #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #16	ENSGT00520000055578.a.b #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT00940000155936.b.b #27	ENSGT00530000064185.b #28	ENSGT00530000064185.a #29	ENSGT00390000017067 #30	ENSGT00940000161217 #31	ENSGT00390000005908 #32	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660	ENSGT00390000005318.b.b.a #34	ENSGT00520000055567.a.b #35	ENSGT00550000074694.b #37
Rambouillet Sheep	MODERN SPECIES	19	OTOF (ENSOARG00020000652) #7	DRC1 (ENSOARG00020000494) #8	SELENOI (ENSOARG00020000449) #9	ADGRF3 (ENSOARG00020000413) #10	HADHB (ENSOARG00020000348) #11	HADHA (ENSOARG00020000289) #12	GAREM2 (ENSOARG00020000249) #13	RAB10 (ENSOARG00020000225) #14	ENSOARG00020000209 #15	KIF3C (ENSOARG00020022724) #16	ASXL2 (ENSOARG00020022527) #17	ENSOARG00020022321 #18	DNMT3A (ENSOARG00020022113) #19	POMC (ENSOARG00020022037) #20	EFR3B (ENSOARG00020021643) #21	DNAJC27 (ENSOARG00020021503) #22	ADCY3 (ENSOARG00020021236) #23	CENPO (ENSOARG00020021166) #24	PTRHD1 (ENSOARG00020021146) #25	NCOA1 (ENSOARG00020020912) #26	ITSN2 (ENSOARG00020020291) #27	ENSOARG00020020223 #28	FAM228B (ENSOARG00020020153) #29	PFN4 (ENSOARG00020020118) #30	TP53I3 (ENSOARG00020020085) #31	SF3B6 (ENSOARG00020020043) #32	FKBP1B (ENSOARG00020019964) #33	MFSD2B (ENSOARG00020019757) #34	UBXN2A (ENSOARG00020019662) #35	ENSOARG00020019629 #36	ATAD2B (ENSOARG00020019344) #37
Goat	MODERN SPECIES	2	FAM166C (ENSCHIG00000017427)	DRC1 (ENSCHIG00000001933) #8	ENSCHIG00000013868 #9	ENSCHIG00000023283	HADHB (ENSCHIG00000024735) #11	HADHA (ENSCHIG00000022677) #12	GAREM2 (ENSCHIG00000022994) #13	RAB10 (ENSCHIG00000007930) #14	KIF3C (ENSCHIG00000005084) #16	ENSCHIG00000009652	ASXL2 (ENSCHIG00000023616) #17	ENSCHIG00000010663 #18	DNMT3A (ENSCHIG00000014247) #19	POMC (ENSCHIG00000024414) #20	EFR3B (ENSCHIG00000013224) #21	DNAJC27 (ENSCHIG00000013821) #22	ADCY3 (ENSCHIG00000025812) #23	ENSCHIG00000014194 #24	PTRHD1 (ENSCHIG00000014757) #25	NCOA1 (ENSCHIG00000016656) #26	ITSN2 (ENSCHIG00000012898) #27	ENSCHIG00000012771 #28	FAM228B (ENSCHIG00000022823) #29	PFN4 (ENSCHIG00000026277) #30	TP53I3 (ENSCHIG00000007693) #31	SF3B6 (ENSCHIG00000009902) #32	FKBP1B (ENSCHIG00000025133) #33	WDCP (ENSCHIG00000017430)	MFSD2B (ENSCHIG00000015093) #34	UBXN2A (ENSCHIG00000008772) #35	ATAD2B (ENSCHIG00000016699) #37
Bovinae	ANCESTRAL SPECIES	4	ENSGT00940000155086.C #7	ENSGT00940000153804.A #8	ENSGT00950000183117.b #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #16	ENSGT00520000055578.a.b #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00960000190709	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT00940000155936.b.b #27	ENSGT00940000164632.b	ENSGT00530000064185.b #28	ENSGT00530000064185.a #29	ENSGT00390000017067 #30	ENSGT00940000161217 #31	ENSGT00390000005908.s.a #32	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660	ENSGT00390000005318.b.b.a #34	ENSGT00520000055567.a.b #35
American bison	MODERN SPECIES	3068	ENSBBBG00000017459 #8	SELENOI (ENSBBBG00000017484) #9	ADGRF3 (ENSBBBG00000017500) #10	HADHB (ENSBBBG00000017631) #11	HADHA (ENSBBBG00000017750) #12	GAREM2 (ENSBBBG00000008382) #13	RAB10 (ENSBBBG00000017772) #14	KIF3C (ENSBBBG00000017822) #16	ENSBBBG00000017835	ASXL2 (ENSBBBG00000017858) #17	DTNB (ENSBBBG00000018305)	DNMT3A (ENSBBBG00000004490) #19	ENSBBBG00000018393	POMC (ENSBBBG00000006902) #20	EFR3B (ENSBBBG00000004527) #21	DNAJC27 (ENSBBBG00000018479) #22	ADCY3 (ENSBBBG00000018516) #23	CENPO (ENSBBBG00000018527) #24	PTRHD1 (ENSBBBG00000004568) #25	NCOA1 (ENSBBBG00000018553) #26	ITSN2 (ENSBBBG00000018695) #27	ENSBBBG00000018716 #28	FAM228B (ENSBBBG00000018728) #29	PFN4 (ENSBBBG00000018737) #30	TP53I3 (ENSBBBG00000018749) #31	ENSBBBG00000018761 #32	FKBP1B (ENSBBBG00000004715) #33	WDCP (ENSBBBG00000018782)	MFSD2B (ENSBBBG00000004782) #34	UBXN2A (ENSBBBG00000018929) #35	ATAD2B (ENSBBBG00000018952) #37
Bos	ANCESTRAL SPECIES	5	ENSGT00950000183117.b #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT01100000263481.n.a.a.a.b.b.b.b.b.b.b.a	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #16	ENSGT00950000183198.c.b.b.d	ENSGT00520000055578.a.b #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00960000190709	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT00940000155936.b.b #27	ENSGT00940000164632.b	ENSGT00530000064185.b #28	ENSGT00530000064185.a #29	ENSGT00390000017067 #30	ENSGT00940000161217 #31	ENSGT00390000005908.s.a #32	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660	ENSGT00390000005318.b.b.a #34	ENSGT00520000055567.a.b #35
Bos_a	ANCESTRAL SPECIES	6	ENSGT00940000153804.A #8	ENSGT00950000183117.b #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT01100000263481.n.a.a.a.b.b.b.b.b.b.b.a	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #16	ENSGT00520000055578.a.b #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00960000190709	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT00940000155936.b.b #27	ENSGT00530000064185.b #28	ENSGT00530000064185.a #29	ENSGT00390000017067 #30	ENSGT00940000161217 #31	ENSGT00390000005908.t #32	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660	ENSGT00390000005318.b.b.a #34	ENSGT00520000055567.a.b #35	ENSGT00550000074694.b #37
Wild yak	MODERN SPECIES	752	DRC1 (ENSBMUG00000007424) #8	SELENOI (ENSBMUG00000007207) #9	ADGRF3 (ENSBMUG00000007181) #10	HADHB (ENSBMUG00000007151) #11	HADHA (ENSBMUG00000007070) #12	GAREM2 (ENSBMUG00000007039) #13	RAB10 (ENSBMUG00000007030) #14	KIF3C (ENSBMUG00000007015) #16	ENSBMUG00000007004	ASXL2 (ENSBMUG00000006985) #17	ENSBMUG00000006789 #18	DNMT3A (ENSBMUG00000006671) #19	ENSBMUG00000006637	POMC (ENSBMUG00000006633) #20	EFR3B (ENSBMUG00000006619) #21	DNAJC27 (ENSBMUG00000006549) #22	ADCY3 (ENSBMUG00000006526) #23	CENPO (ENSBMUG00000006492) #24	PTRHD1 (ENSBMUG00000006473) #25	NCOA1 (ENSBMUG00000006387) #26	ITSN2 (ENSBMUG00000006272) #27	ENSBMUG00000006172 #28	FAM228B (ENSBMUG00000006164) #29	PFN4 (ENSBMUG00000006151) #30	TP53I3 (ENSBMUG00000006147) #31	ENSBMUG00000006141 #32	FKBP1B (ENSBMUG00000006132) #33	WDCP (ENSBMUG00000006107)	MFSD2B (ENSBMUG00000006096) #34	UBXN2A (ENSBMUG00000006075) #35	ATAD2B (ENSBMUG00000006045) #37
Domestic yak	MODERN SPECIES	28	ADGRF3 (ENSBGRG00000011740) #10	HADHB (ENSBGRG00000011944) #11	HADHA (ENSBGRG00000012469) #12	ENSBGRG00000013436	GAREM2 (ENSBGRG00000013458) #13	RAB10 (ENSBGRG00000013498) #14	KIF3C (ENSBGRG00000013558) #16	ENSBGRG00000013690	ENSBGRG00000013699	ASXL2 (ENSBGRG00000013739) #17	DTNB (ENSBGRG00000014178)	DNMT3A (ENSBGRG00000015176) #19	ENSBGRG00000015691	ENSBGRG00000015740 #20	EFR3B (ENSBGRG00000015799) #21	DNAJC27 (ENSBGRG00000016424) #22	ADCY3 (ENSBGRG00000016642) #23	CENPO (ENSBGRG00000017015) #24	PTRHD1 (ENSBGRG00000017120) #25	NCOA1 (ENSBGRG00000017177) #26	ENSBGRG00000017956	ITSN2 (ENSBGRG00000018009) #27	ENSBGRG00000018976 #28	FAM228B (ENSBGRG00000019019) #29	PFN4 (ENSBGRG00000019061) #30	TP53I3 (ENSBGRG00000019116) #31	FKBP1B (ENSBGRG00000019279) #33	WDCP (ENSBGRG00000019427)	MFSD2B (ENSBGRG00000019458) #34	UBXN2A (ENSBGRG00000019653) #35	ATAD2B (ENSBGRG00000019718) #37
Bos_b	ANCESTRAL SPECIES	16	ENSGT00940000153804.A #8	ENSGT00950000183117.b #9	ENSGT00940000161541 #10	ENSGT01030000234626.A.b #11	ENSGT00940000154677 #12	ENSGT01100000263481.n.a.a.a.b.b.b.b.b.b.b.a	ENSGT00530000063834.e.b #13	ENSGT00940000156975.u #14	ENSGT00940000153739.a.b #16	ENSGT00520000055578.a.b #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000155459 #19	ENSGT00960000190709	ENSGT00390000016811 #20	ENSGT00390000002143.b #21	ENSGT00940000157133 #22	ENSGT00940000156549.a.a #23	ENSGT00390000016702 #24	ENSGT00500000044959 #25	ENSGT00950000183021.b #26	ENSGT01100000263480.a.a.b.a.b.a.a.b.a.b.a.b	ENSGT00940000155936.b.b #27	ENSGT00940000164632.b	ENSGT00530000064185.b #28	ENSGT00530000064185.a #29	ENSGT00390000017067 #30	ENSGT00940000161217 #31	ENSGT00390000005908.s.a #32	ENSGT00940000153311.a.b.b #33	ENSGT00390000001660	ENSGT00390000005318.b.b.a #34
Hybrid Bos Indicus	MODERN SPECIES	2	MAPRE3 (ENSBIXG00005028362)	DPYSL5 (ENSBIXG00005028296)	ENSBIXG00005028248	SLC35F6 (ENSBIXG00005007597)	KCNK3 (ENSBIXG00005028186)	CIB4 (ENSBIXG00005028164)	FAM166C (ENSBIXG00005028118)	OTOF (ENSBIXG00005028079) #7	DRC1 (ENSBIXG00005028017) #8	ASXL2 (ENSBIXG00005027961) #17	ENSBIXG00005027805 #18	DNMT3A (ENSBIXG00005027616) #19	ENSBIXG00005027443	POMC (ENSBIXG00005027434) #20	EFR3B (ENSBIXG00005027378) #21	DNAJC27 (ENSBIXG00005027192) #22	ADCY3 (ENSBIXG00005027167) #23	CENPO (ENSBIXG00005027141) #24	PTRHD1 (ENSBIXG00005027086) #25	NCOA1 (ENSBIXG00005027050) #26	ENSBIXG00005026925	ENSBIXG00005004595	ITSN2 (ENSBIXG00005026878) #27	ENSBIXG00005026774 #29	PFN4 (ENSBIXG00005004569) #30	TP53I3 (ENSBIXG00005026721) #31	ENSBIXG00005004563 #32	FKBP1B (ENSBIXG00005026682) #33	WDCP (ENSBIXG00005026653)	MFSD2B (ENSBIXG00005026634) #34	UBXN2A (ENSBIXG00005026562) #35
Cow	MODERN SPECIES	2	SELENOI (ENSBTAG00000007837) #9	ENSBTAG00000017330	ADGRF3 (ENSBTAG00000005736) #10	HADHB (ENSBTAG00000010083) #11	HADHA (ENSBTAG00000015038) #12	ENSBTAG00000054613	GAREM2 (ENSBTAG00000015037) #13	RAB10 (ENSBTAG00000000985) #14	KIF3C (ENSBTAG00000019138) #16	ASXL2 (ENSBTAG00000019983) #17	DTNB (ENSBTAG00000021072) #18	DNMT3A (ENSBTAG00000021143) #19	ENSBTAG00000054828	POMC (ENSBTAG00000007897) #20	EFR3B (ENSBTAG00000007888) #21	DNAJC27 (ENSBTAG00000018239) #22	ADCY3 (ENSBTAG00000018705) #23	CENPO (ENSBTAG00000015014) #24	PTRHD1 (ENSBTAG00000015012) #25	NCOA1 (ENSBTAG00000015007) #26	ENSBTAG00000049243	ITSN2 (ENSBTAG00000023172) #27	ENSBTAG00000051942	FAM228A (ENSBTAG00000000261) #28	FAM228B (ENSBTAG00000030864) #29	PFN4 (ENSBTAG00000003404) #30	TP53I3 (ENSBTAG00000003405) #31	SF3B6 (ENSBTAG00000003407) #32	FKBP1B (ENSBTAG00000003409) #33	WDCP (ENSBTAG00000016987)	MFSD2B (ENSBTAG00000002034) #34
Siberian musk deer	MODERN SPECIES	240	ENSMMSG00000004743 #8	ENSMMSG00000004719 #8	SELENOI (ENSMMSG00000004311) #9	ADGRF3 (ENSMMSG00000004296) #10	HADHB (ENSMMSG00000004251) #11	HADHA (ENSMMSG00000004193) #12	GAREM2 (ENSMMSG00000004177) #13	ENSMMSG00000004163 #14	KIF3C (ENSMMSG00000004152) #16	ASXL2 (ENSMMSG00000004131) #17	ENSMMSG00000004026 #18	DNMT3A (ENSMMSG00000003949) #19	ENSMMSG00000003931	POMC (ENSMMSG00000003919) #20	EFR3B (ENSMMSG00000003852) #21	DNAJC27 (ENSMMSG00000003798) #22	ADCY3 (ENSMMSG00000003774) #23	CENPO (ENSMMSG00000003754) #24	ENSMMSG00000003745 #25	NCOA1 (ENSMMSG00000003674) #26	ITSN2 (ENSMMSG00000003485) #27	ENSMMSG00000003424 #28	PFN4 (ENSMMSG00000003409) #30	TP53I3 (ENSMMSG00000003394) #31	FAM228B (ENSMMSG00000003378) #29	ENSMMSG00000003362 #32	FKBP1B (ENSMMSG00000003309) #33	ENSMMSG00000003296	WDCP (ENSMMSG00000003288)	MFSD2B (ENSMMSG00000003262) #34	UBXN2A (ENSMMSG00000003243) #35
Yarkand deer	MODERN SPECIES	2	FAM166C (ENSCHYG00000008639)	OTOF (ENSCHYG00000008676) #7	DRC1 (ENSCHYG00000009228) #8	SELENOI (ENSCHYG00000009378) #9	ADGRF3 (ENSCHYG00000009487) #10	HADHB (ENSCHYG00000009640) #11	HADHA (ENSCHYG00000010003) #12	GAREM2 (ENSCHYG00000011311) #13	RAB10 (ENSCHYG00000011347) #14	KIF3C (ENSCHYG00000011405) #16	ASXL2 (ENSCHYG00000011494) #17	ENSCHYG00000011641 #18	DNMT3A (ENSCHYG00000012556) #19	POMC (ENSCHYG00000013191) #20	EFR3B (ENSCHYG00000013292) #21	DNAJC27 (ENSCHYG00000013784) #22	ADCY3 (ENSCHYG00000013932) #23	CENPO (ENSCHYG00000014066) #24	PTRHD1 (ENSCHYG00000014175) #25	NCOA1 (ENSCHYG00000014313) #26	ITSN2 (ENSCHYG00000014839) #27	ENSCHYG00000015598 #28	FAM228B (ENSCHYG00000015709) #29	ENSCHYG00000015795	PFN4 (ENSCHYG00000015825) #30	TP53I3 (ENSCHYG00000016071) #31	FKBP1B (ENSCHYG00000016279) #33	WDCP (ENSCHYG00000016368)	MFSD2B (ENSCHYG00000016413) #34	ENSCHYG00000016517 #35	ATAD2B (ENSCHYG00000016580) #37