Rodentia_A ANCESTRAL SPECIES 18 ENSGT00390000000742 ENSGT00390000018710 #7 ENSGT00390000011717 #8 ENSGT00940000156908 #9 ENSGT00900000143784 #10 ENSGT00940000154977 #11 ENSGT00860000135817 #12 ENSGT00940000157063 #13 ENSGT00950000182878.b.a.c.a.b #14 ENSGT00700000106212 #15 ENSGT00390000008325.b.b #17 ENSGT00940000155268 #18 ENSGT00940000161902.a.a #19 ENSGT00940000156118 #20 ENSGT00940000160438 #21 ENSGT00950000182978.A.a.b.a #22 ENSGT01090000260093.a #23 ENSGT00390000001710 #24 ENSGT00510000046470.a.a.a.d.a #25 ENSGT00900000143241 #26 ENSGT00950000183021.a.a.b #27 ENSGT00940000159454 #28 ENSGT01080000257410.B.a #29 ENSGT00940000157544 #30 ENSGT00390000005870 #31 ENSGT00940000155894 #32 ENSGT00940000159307 #33 ENSGT00940000157108 #35 ENSGT00390000015084.d #36 ENSGT00550000074850 #37 ENSGT00940000158260 Sciuridae ANCESTRAL SPECIES 17 ENSGT00390000000742 ENSGT00390000018710 #7 ENSGT00390000011717 #8 ENSGT00940000156908 #9 ENSGT00900000143784 #10 ENSGT00940000154977 #11 ENSGT00860000135817 #12 ENSGT00940000157063 #13 ENSGT00950000182878.b.a.c.a.b.o.a #14 ENSGT00700000106212 #15 ENSGT00390000008325.b.b #17 ENSGT00940000155268 #18 ENSGT00940000161902.a.a #19 ENSGT00940000156118 #20 ENSGT00940000160438 #21 ENSGT00950000182978.A.a.b.a #22 ENSGT01090000260093.a #23 ENSGT00390000001710 #24 ENSGT00510000046470.a.a.a.d.a #25 ENSGT00900000143241 #26 ENSGT00950000183021.a.a.b #27 ENSGT00940000159454 #28 ENSGT01080000257410.B.a #29 ENSGT00940000157544 #30 ENSGT00390000005870 #31 ENSGT00940000155894 #32 ENSGT00940000159307 #33 ENSGT00940000157108 #35 ENSGT00390000015084.d #36 ENSGT00550000074850 #37 ENSGT00940000158260 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES ENSSVLG00005002242 #7 ENSSVLG00005002231 #8 UBE2W (ENSSVLG00005002205) #9 ENSSVLG00005002189 #10 STAU2 (ENSSVLG00005002079) #11 ENSSVLG00005002033 #12 RDH10 (ENSSVLG00005002017) #13 ENSSVLG00005001995 #14 C8orf89 (ENSSVLG00005001984) #15 ENSSVLG00005001968 #16 SBSPON (ENSSVLG00005001957) #17 TERF1 (ENSSVLG00005001939) #18 KCNB2 (ENSSVLG00005001924) #19 TRPA1 (ENSSVLG00005001874) #20 MSC (ENSSVLG00005001842) #21 EYA1 (ENSSVLG00005001545) #22 XKR9 (ENSSVLG00005001398) #23 LACTB2 (ENSSVLG00005001378) #24 TRAM1 (ENSSVLG00005001342) #25 ENSSVLG00005001334 #26 NCOA2 (ENSSVLG00005001311) #27 PRDM14 (ENSSVLG00005001279) #28 SLCO5A1 (ENSSVLG00005001204) #29 SULF1 (ENSSVLG00005001105) #30 C8orf34 (ENSSVLG00005001043) #31 PREX2 (ENSSVLG00005000982) #32 CPA6 (ENSSVLG00005000928) #33 ENSSVLG00005000910 #34 ARFGEF1 (ENSSVLG00005000887) #35 CSPP1 (ENSSVLG00005000862) #36 COPS5 (ENSSVLG00005000836) #37 Eurasian red squirrel MODERN SPECIES 13 ENSSVLG00005003891 ENSSVLG00005003941 ENSSVLG00005003956 ENSSVLG00005003973 ENSSVLG00005003992 ENSSVLG00005004004 ENSSVLG00005004015 ENSSVLG00005004033 ENSSVLG00005004042 ENSSVLG00005004081 ENSSVLG00005004183 ZNF582 (ENSSVLG00005004324) ENSSVLG00005004363 ENSSVLG00005004387 ENSSVLG00005004400 ENSSVLG00005004408 ##22 ENSSVLG00005004422 ENSSVLG00005004455 ENSSVLG00005004485 ENSSVLG00005004508 ENSSVLG00005004616 ENSSVLG00005004768 ENSSVLG00005004794 ENSSVLG00005004849 ENSSVLG00005004862 ENSSVLG00005004891 ENSSVLG00005004910 MBL2 (ENSSVLG00005004931) DKK1 (ENSSVLG00005004962) ENSSVLG00005005006 ENSSVLG00005005092 Marmotini ANCESTRAL SPECIES 10 ENSGT00940000156130.b ENSGT00390000000742 ENSGT00390000018710 #7 ENSGT00390000011717 #8 ENSGT00940000156908 #9 ENSGT00940000154977 #11 ENSGT00860000135817 #12 ENSGT00940000157063 #13 ENSGT00950000182878.b.a.c.a.b.o.a #14 ENSGT00700000106212 #15 ENSGT00390000008325.b.b #17 ENSGT00940000155268.m #18 ENSGT00940000161902.a.a #19 ENSGT00940000156118 #20 ENSGT00940000160438 #21 ENSGT00950000182978.A.a.b.a #22 ENSGT01090000260093.a #23 ENSGT00390000001710 #24 ENSGT00510000046470.a.a.a.d.a #25 ENSGT00900000143241 #26 ENSGT00950000183021.a.a.b #27 ENSGT00940000159454 #28 ENSGT01080000257410.B.a #29 ENSGT00940000154502 ENSGT00940000155059 ENSGT00940000159497 ENSGT00940000158863 ENSGT00940000153886.a.b.f ENSGT00940000153649.A ENSGT00940000159947 ENSGT00940000156304 Marmotini_b ANCESTRAL SPECIES 52 ENSGT00940000158635 ENSGT00940000159124 ENSGT00390000000742 ENSGT00390000018710 #7 ENSGT00390000011717 #8 ENSGT00940000156908 #9 ENSGT00940000154977 #11 ENSGT00940000157063 #13 ENSGT00950000182878.b.a.c.a.b.o.a #14 ENSGT00700000106212 #15 ENSGT00390000008325.b.b #17 ENSGT00940000155268.m #18 ENSGT00940000161902.a.a #19 ENSGT00940000156118 #20 ENSGT00940000160438 #21 ENSGT00950000182978.A.a.b.a #22 ENSGT01090000260093.a #23 ENSGT00390000001710 #24 ENSGT00510000046470.a.a.a.d.a #25 ENSGT00900000143241 #26 ENSGT00950000183021.a.a.b #27 ENSGT00940000159454 #28 ENSGT01080000257410.B.a #29 ENSGT00390000016584.p ENSGT00940000154502 ENSGT00940000155059 ENSGT00940000159497 ENSGT00940000158863 ENSGT00940000153886.a.b.f ENSGT00940000153649.A ENSGT00940000159947 Arctic ground squirrel MODERN SPECIES 183 LY96 (ENSUPAG00010011295) TMEM70 (ENSUPAG00010011291) #7 ELOC (ENSUPAG00010011281) #8 UBE2W (ENSUPAG00010011274) #9 STAU2 (ENSUPAG00010011157) #11 RDH10 (ENSUPAG00010011147) #13 ENSUPAG00010011144 #14 C8orf89 (ENSUPAG00010011139) #15 SBSPON (ENSUPAG00010011134) #17 TERF1 (ENSUPAG00010011060) #18 KCNB2 (ENSUPAG00010011054) #19 TRPA1 (ENSUPAG00010010963) #20 MSC (ENSUPAG00010010953) #21 EYA1 (ENSUPAG00010010877) #22 XKR9 (ENSUPAG00010010873) #23 LACTB2 (ENSUPAG00010010856) #24 TRAM1 (ENSUPAG00010010848) #25 ENSUPAG00010010844 #26 NCOA2 (ENSUPAG00010010786) #27 PRDM14 (ENSUPAG00010010764) #28 SLCO5A1 (ENSUPAG00010010676) #29 Squirrel MODERN SPECIES 248 HNF4G (ENSSTOG00000007181) PI15 (ENSSTOG00000013212) GDAP1 (ENSSTOG00000004103) ELOC (ENSSTOG00000020823) #8 UBE2W (ENSSTOG00000008020) #9 STAU2 (ENSSTOG00000011076) #11 RDH10 (ENSSTOG00000004602) #13 RPL7 (ENSSTOG00000004586) ##14 C8orf89 (ENSSTOG00000032033) #15 SBSPON (ENSSTOG00000027846) #17 ENSSTOG00000032334 TRPA1 (ENSSTOG00000005024) #20 MSC (ENSSTOG00000024832) #21 EYA1 (ENSSTOG00000005218) #22 XKR9 (ENSSTOG00000027746) #23 Alpin marmot MODERN SPECIES 16 JPH1 (ENSMMMG00000005340) LY96 (ENSMMMG00000005320) TMEM70 (ENSMMMG00000005317) #7 ENSMMMG00000005290 #8 ENSMMMG00000005257 #9 STAU2 (ENSMMMG00000005198) #11 ENSMMMG00000005173 #12 RDH10 (ENSMMMG00000005136) #13 RPL7 (ENSMMMG00000005128) #14 C8orf89 (ENSMMMG00000005106) #15 SBSPON (ENSMMMG00000005085) #17 ENSMMMG00000005060 #18 KCNB2 (ENSMMMG00000005040) #19 TRPA1 (ENSMMMG00000004948) #20 MSC (ENSMMMG00000004901) #21 EYA1 (ENSMMMG00000004783) #22 XKR9 (ENSMMMG00000004758) #23 LACTB2 (ENSMMMG00000004742) #24 TRAM1 (ENSMMMG00000004176) #25 ENSMMMG00000004157 ENSMMMG00000004137 #26 NCOA2 (ENSMMMG00000003994) #27 PRDM14 (ENSMMMG00000003951) #28 SLCO5A1 (ENSMMMG00000003820) #29 SDCBP (ENSMMMG00000003758) NSMAF (ENSMMMG00000003716) TOX (ENSMMMG00000003707) CA8 (ENSMMMG00000003649) ENSMMMG00000003620 ENSMMMG00000003618 CHD7 (ENSMMMG00000003455) Hystricomorpha ANCESTRAL SPECIES 12 ENSGT00940000159124 ENSGT00940000156130.b ENSGT00390000000742 ENSGT00390000018710 #7 ENSGT00390000011717 #8 ENSGT00940000156908 #9 ENSGT00940000154977 #11 ENSGT00940000157063 #13 ENSGT00950000182878.b.a.c.a.b #14 ENSGT00700000106212 #15 ENSGT00390000008325.b.b #17 ENSGT00940000155268 #18 ENSGT00940000161902.a.a #19 ENSGT00940000156118 #20 ENSGT00940000160438 #21 ENSGT00950000182978.A.a.b.a #22 ENSGT01090000260093.a #23 ENSGT00390000001710 #24 ENSGT00510000046470.a.a.a.d.a #25 ENSGT00950000183021.a.a.b #27 ENSGT00940000159454 #28 ENSGT01080000257410.B.a #29 ENSGT00940000157544 #30 ENSGT00390000005870 #31 ENSGT00940000155894 #32 ENSGT00940000159307 #33 ENSGT00940000157108 #35 ENSGT00390000015084.d #36 ENSGT00550000074850 #37 ENSGT00940000158260 ENSGT00940000162447 Hystricomorpha_a ANCESTRAL SPECIES 9 ENSGT00940000159124 ENSGT00940000156130.b ENSGT00390000000742 ENSGT00390000018710 #7 ENSGT00390000011717 #8 ENSGT00940000156908 #9 ENSGT00940000154977 #11 ENSGT00940000157063 #13 ENSGT00950000182878.b.a.c.a.b.n #14 ENSGT00700000106212 #15 ENSGT00390000008325.b.b #17 ENSGT00940000155268 #18 ENSGT00940000161902.a.a #19 ENSGT00940000156118 #20 ENSGT00940000160438 #21 ENSGT00950000182978.A.a.b.a #22 ENSGT01090000260093.a #23 ENSGT00390000001710 #24 ENSGT00510000046470.a.a.a.d.a #25 ENSGT00950000183021.a.a.b #27 ENSGT00940000159454 #28 ENSGT01080000257410.B.a #29 ENSGT00940000157544 #30 ENSGT00390000005870 #31 ENSGT00940000155894 #32 ENSGT00940000159307 #33 ENSGT00940000157108 #35 ENSGT00390000015084.d #36 ENSGT00550000074850 #37 ENSGT00940000158260 ENSGT00940000162447 Hystricomorpha_b ANCESTRAL SPECIES 25 ENSGT00940000156130.b ENSGT00390000000742 ENSGT00390000018710 #7 ENSGT00390000011717 #8 ENSGT00940000156908 #9 ENSGT00940000154977 #11 ENSGT00940000157063 #13 ENSGT00950000182878.b.a.c.a.b.n #14 ENSGT00700000106212 #15 ENSGT00390000008325.b.b #17 ENSGT00940000155268 #18 ENSGT00940000161902.a.a #19 ENSGT00940000164329 ENSGT00940000156118 #20 ENSGT00940000160438 #21 ENSGT00950000182978.A.a.b.a #22 ENSGT01090000260093.a #23 ENSGT00390000001710 #24 ENSGT00510000046470.a.a.a.d.a #25 ENSGT00950000183021.a.a.b #27 ENSGT00940000159454 #28 ENSGT01080000257410.B.a #29 ENSGT00940000157544 #30 ENSGT00390000005870 #31 ENSGT00940000155894 #32 ENSGT00940000159307 #33 ENSGT00940000157108 #35 ENSGT00390000015084.d #36 ENSGT00550000074850 #37 ENSGT00940000158260 ENSGT00940000162447 Degu MODERN SPECIES 132 LY96 (ENSODEG00000004007) TMEM70 (ENSODEG00000003940) #7 ENSODEG00000003911 #8 UBE2W (ENSODEG00000003806) #9 STAU2 (ENSODEG00000003610) #11 RDH10 (ENSODEG00000003490) #13 ENSODEG00000004457 #14 C8orf89 (ENSODEG00000004421) #15 SBSPON (ENSODEG00000004392) #17 ENSODEG00000004364 ENSODEG00000004166 #18 ENSODEG00000004130 KCNB2 (ENSODEG00000004106) #19 TRPA1 (ENSODEG00000004465) #20 MSC (ENSODEG00000004396) #21 EYA1 (ENSODEG00000003994) #22 ENSODEG00000003933 ENSODEG00000003759 ENSODEG00000019011 XKR9 (ENSODEG00000003655) #23 LACTB2 (ENSODEG00000003774) #24 TRAM1 (ENSODEG00000003735) #25 ENSODEG00000018956 NCOA2 (ENSODEG00000003435) #27 PRDM14 (ENSODEG00000003245) #28 ENSODEG00000018928 SLCO5A1 (ENSODEG00000005815) #29 SULF1 (ENSODEG00000005337) #30 ENSODEG00000004397 ENSODEG00000004347 ENSODEG00000004297 Long-tailed chinchilla MODERN SPECIES 151 GDAP1 (ENSCLAG00000002271) JPH1 (ENSCLAG00000002323) LY96 (ENSCLAG00000002393) ENSCLAG00000002465 #7 ENSCLAG00000002529 #8 UBE2W (ENSCLAG00000002672) #9 STAU2 (ENSCLAG00000001824) #11 RDH10 (ENSCLAG00000002112) #13 ENSCLAG00000002143 #14 C8orf89 (ENSCLAG00000002274) #15 SBSPON (ENSCLAG00000002049) #17 TERF1 (ENSCLAG00000002076) #18 ENSCLAG00000002142 TRPA1 (ENSCLAG00000002418) #20 MSC (ENSCLAG00000002927) #21 EYA1 (ENSCLAG00000003062) #22 XKR9 (ENSCLAG00000004198) #23 LACTB2 (ENSCLAG00000001647) #24 TRAM1 (ENSCLAG00000001706) #25 NCOA2 (ENSCLAG00000001878) #27 PRDM14 (ENSCLAG00000001937) #28 SLCO5A1 (ENSCLAG00000001974) #29 SULF1 (ENSCLAG00000002339) #30 C8orf34 (ENSCLAG00000002539) #31 PREX2 (ENSCLAG00000002871) #32 CPA6 (ENSCLAG00000003671) #33 ARFGEF1 (ENSCLAG00000003828) #35 ENSCLAG00000002081 #36 COPS5 (ENSCLAG00000002121) #37 PPP1R42 (ENSCLAG00000002290) TCF24 (ENSCLAG00000002343) Guinea pig MODERN SPECIES GDAP1 (ENSCPOG00000002277) JPH1 (ENSCPOG00000002273) LY96 (ENSCPOG00000033283) TMEM70 (ENSCPOG00000031120) #7 ELOC (ENSCPOG00000032030) #8 UBE2W (ENSCPOG00000008803) #9 STAU2 (ENSCPOG00000015001) #11 ENSCPOG00000000770 #13 RPL7 (ENSCPOG00000004140) #14 C8orf89 (ENSCPOG00000033934) #15 SBSPON (ENSCPOG00000010933) #17 TERF1 (ENSCPOG00000009638) #18 KCNB2 (ENSCPOG00000000689) #19 Trpa1 (ENSCPOG00000011519) #20 MSC (ENSCPOG00000038612) #21 EYA1 (ENSCPOG00000000714) #22 LACTB2 (ENSCPOG00000007604) #24 TRAM1 (ENSCPOG00000008533) #25 NCOA2 (ENSCPOG00000000493) #27 PRDM14 (ENSCPOG00000027176) #28 SLCO5A1 (ENSCPOG00000032623) #29 SULF1 (ENSCPOG00000000180) #30 ENSCPOG00000008521 #31 PREX2 (ENSCPOG00000002807) #32 CPA6 (ENSCPOG00000012028) #33 ARFGEF1 (ENSCPOG00000014908) #35 ENSCPOG00000008950 ENSCPOG00000030067 #36 COPS5 (ENSCPOG00000011793) #37 TCF24 (ENSCPOG00000014534) MCMDC2 (ENSCPOG00000007493) Naked mole-rat female MODERN SPECIES 13 JPH1 (ENSHGLG00000016053) LY96 (ENSHGLG00000017254) TMEM70 (ENSHGLG00000042950) #7 TCEB1 (ENSHGLG00000042986) #8 UBE2W (ENSHGLG00000016745) #9 STAU2 (ENSHGLG00000014888) #11 RDH10 (ENSHGLG00000013673) #13 RPL7 (ENSHGLG00000017000) #14 SBSPON (ENSHGLG00000044318) #17 Terf1 (ENSHGLG00000013062) #18 ENSHGLG00000021368 KCNB2 (ENSHGLG00000017013) #19 TRPA1 (ENSHGLG00000017879) #20 MSC (ENSHGLG00000040745) #21 ENSHGLG00000038455 EYA1 (ENSHGLG00000019347) #22 ENSHGLG00000018393 XKR9 (ENSHGLG00000033679) #23 ENSHGLG00000006207 #24 TRAM1 (ENSHGLG00000008235) #25 ENSHGLG00000047012 ENSHGLG00000021028 ENSHGLG00000035853 #26 NCOA2 (ENSHGLG00000016603) #27 PRDM14 (ENSHGLG00000016615) #28 ENSHGLG00000047939 SLCO5A1 (ENSHGLG00000007007) #29 SULF1 (ENSHGLG00000015701) #30 ENSHGLG00000042606 ENSHGLG00000039218 ENSHGLG00000018481 #31