Rodentia_A ANCESTRAL SPECIES 18 ENSGT00390000000742 #8 ENSGT00390000018710 #9 ENSGT00390000011717 #10 ENSGT00940000156908 #11 ENSGT00900000143784 ENSGT00940000154977 #12 ENSGT00860000135817 #13 ENSGT00940000157063 #14 ENSGT00950000182878.b.a.c.a.b #15 ENSGT00700000106212 #16 ENSGT00390000008325.b.b #17 ENSGT00940000155268 #18 ENSGT00940000161902.a.a #19 ENSGT00940000156118 #20 ENSGT00940000160438 #21 ENSGT00950000182978.A.a.b.a #22 ENSGT01090000260093.a #23 ENSGT00390000001710 #24 ENSGT00510000046470.a.a.a.d.a #25 ENSGT00900000143241 #27 ENSGT00950000183021.a.a.b #28 ENSGT00940000159454 #29 ENSGT01080000257410.B.a #30 ENSGT00940000157544 ENSGT00390000005870 ENSGT00940000155894 ENSGT00940000159307 ENSGT00940000157108 ENSGT00390000015084.d ENSGT00550000074850 ENSGT00940000158260 Sciuridae ANCESTRAL SPECIES 17 ENSGT00390000000742 #8 ENSGT00390000018710 #9 ENSGT00390000011717 #10 ENSGT00940000156908 #11 ENSGT00900000143784 ENSGT00940000154977 #12 ENSGT00860000135817 #13 ENSGT00940000157063 #14 ENSGT00950000182878.b.a.c.a.b.o.a #15 ENSGT00700000106212 #16 ENSGT00390000008325.b.b #17 ENSGT00940000155268 #18 ENSGT00940000161902.a.a #19 ENSGT00940000156118 #20 ENSGT00940000160438 #21 ENSGT00950000182978.A.a.b.a #22 ENSGT01090000260093.a #23 ENSGT00390000001710 #24 ENSGT00510000046470.a.a.a.d.a #25 ENSGT00900000143241 #27 ENSGT00950000183021.a.a.b #28 ENSGT00940000159454 #29 ENSGT01080000257410.B.a #30 ENSGT00940000157544 ENSGT00390000005870 ENSGT00940000155894 ENSGT00940000159307 ENSGT00940000157108 ENSGT00390000015084.d ENSGT00550000074850 ENSGT00940000158260 Marmotini ANCESTRAL SPECIES 10 ENSGT00940000156130.b #7 ENSGT00390000000742 #8 ENSGT00390000018710 #9 ENSGT00390000011717 #10 ENSGT00940000156908 #11 ENSGT00940000154977 #12 ENSGT00860000135817 #13 ENSGT00940000157063 #14 ENSGT00950000182878.b.a.c.a.b.o.a #15 ENSGT00700000106212 #16 ENSGT00390000008325.b.b #17 ENSGT00940000155268.m #18 ENSGT00940000161902.a.a #19 ENSGT00940000156118 #20 ENSGT00940000160438 #21 ENSGT00950000182978.A.a.b.a #22 ENSGT01090000260093.a #23 ENSGT00390000001710 #24 ENSGT00510000046470.a.a.a.d.a #25 ENSGT00900000143241 #27 ENSGT00950000183021.a.a.b #28 ENSGT00940000159454 #29 ENSGT01080000257410.B.a #30 ENSGT00940000154502 #31 ENSGT00940000155059 #32 ENSGT00940000159497 #33 ENSGT00940000158863 #34 ENSGT00940000153886.a.b.f #36 ENSGT00940000153649.A #37 ENSGT00940000159947 ENSGT00940000156304 Alpin marmot MODERN SPECIES 16 JPH1 (ENSMMMG00000005340) #7 LY96 (ENSMMMG00000005320) #8 TMEM70 (ENSMMMG00000005317) #9 ENSMMMG00000005290 #10 ENSMMMG00000005257 #11 STAU2 (ENSMMMG00000005198) #12 ENSMMMG00000005173 #13 RDH10 (ENSMMMG00000005136) #14 RPL7 (ENSMMMG00000005128) #15 C8orf89 (ENSMMMG00000005106) #16 SBSPON (ENSMMMG00000005085) #17 ENSMMMG00000005060 #18 KCNB2 (ENSMMMG00000005040) #19 TRPA1 (ENSMMMG00000004948) #20 MSC (ENSMMMG00000004901) #21 EYA1 (ENSMMMG00000004783) #22 XKR9 (ENSMMMG00000004758) #23 LACTB2 (ENSMMMG00000004742) #24 TRAM1 (ENSMMMG00000004176) #25 ENSMMMG00000004157 #26 ENSMMMG00000004137 #27 NCOA2 (ENSMMMG00000003994) #28 PRDM14 (ENSMMMG00000003951) #29 SLCO5A1 (ENSMMMG00000003820) #30 SDCBP (ENSMMMG00000003758) #31 NSMAF (ENSMMMG00000003716) #32 TOX (ENSMMMG00000003707) #33 CA8 (ENSMMMG00000003649) #34 ENSMMMG00000003620 #35 ENSMMMG00000003618 #36 CHD7 (ENSMMMG00000003455) #37 Marmotini_b ANCESTRAL SPECIES 52 ENSGT00940000158635 ENSGT00940000159124 ENSGT00390000000742 #8 ENSGT00390000018710 #9 ENSGT00390000011717 #10 ENSGT00940000156908 #11 ENSGT00940000154977 #12 ENSGT00940000157063 #14 ENSGT00950000182878.b.a.c.a.b.o.a #15 ENSGT00700000106212 #16 ENSGT00390000008325.b.b #17 ENSGT00940000155268.m #18 ENSGT00940000161902.a.a #19 ENSGT00940000156118 #20 ENSGT00940000160438 #21 ENSGT00950000182978.A.a.b.a #22 ENSGT01090000260093.a #23 ENSGT00390000001710 #24 ENSGT00510000046470.a.a.a.d.a #25 ENSGT00900000143241 #27 ENSGT00950000183021.a.a.b #28 ENSGT00940000159454 #29 ENSGT01080000257410.B.a #30 ENSGT00390000016584.p ENSGT00940000154502 #31 ENSGT00940000155059 #32 ENSGT00940000159497 #33 ENSGT00940000158863 #34 ENSGT00940000153886.a.b.f #36 ENSGT00940000153649.A #37 ENSGT00940000159947 Arctic ground squirrel MODERN SPECIES 183 LY96 (ENSUPAG00010011295) #8 TMEM70 (ENSUPAG00010011291) #9 ELOC (ENSUPAG00010011281) #10 UBE2W (ENSUPAG00010011274) #11 STAU2 (ENSUPAG00010011157) #12 RDH10 (ENSUPAG00010011147) #14 ENSUPAG00010011144 #15 C8orf89 (ENSUPAG00010011139) #16 SBSPON (ENSUPAG00010011134) #17 TERF1 (ENSUPAG00010011060) #18 KCNB2 (ENSUPAG00010011054) #19 TRPA1 (ENSUPAG00010010963) #20 MSC (ENSUPAG00010010953) #21 EYA1 (ENSUPAG00010010877) #22 XKR9 (ENSUPAG00010010873) #23 LACTB2 (ENSUPAG00010010856) #24 TRAM1 (ENSUPAG00010010848) #25 ENSUPAG00010010844 #27 NCOA2 (ENSUPAG00010010786) #28 PRDM14 (ENSUPAG00010010764) #29 SLCO5A1 (ENSUPAG00010010676) #30 Squirrel MODERN SPECIES 248 HNF4G (ENSSTOG00000007181) PI15 (ENSSTOG00000013212) GDAP1 (ENSSTOG00000004103) ELOC (ENSSTOG00000020823) #10 UBE2W (ENSSTOG00000008020) #11 STAU2 (ENSSTOG00000011076) #12 RDH10 (ENSSTOG00000004602) #14 RPL7 (ENSSTOG00000004586) ##15 C8orf89 (ENSSTOG00000032033) #16 SBSPON (ENSSTOG00000027846) #17 ENSSTOG00000032334 TRPA1 (ENSSTOG00000005024) #20 MSC (ENSSTOG00000024832) #21 EYA1 (ENSSTOG00000005218) #22 XKR9 (ENSSTOG00000027746) #23 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES ENSSVLG00005002242 #9 ENSSVLG00005002231 #10 UBE2W (ENSSVLG00005002205) #11 ENSSVLG00005002189 STAU2 (ENSSVLG00005002079) #12 ENSSVLG00005002033 #13 RDH10 (ENSSVLG00005002017) #14 ENSSVLG00005001995 #15 C8orf89 (ENSSVLG00005001984) #16 ENSSVLG00005001968 SBSPON (ENSSVLG00005001957) #17 TERF1 (ENSSVLG00005001939) #18 KCNB2 (ENSSVLG00005001924) #19 TRPA1 (ENSSVLG00005001874) #20 MSC (ENSSVLG00005001842) #21 EYA1 (ENSSVLG00005001545) #22 XKR9 (ENSSVLG00005001398) #23 LACTB2 (ENSSVLG00005001378) #24 TRAM1 (ENSSVLG00005001342) #25 ENSSVLG00005001334 #27 NCOA2 (ENSSVLG00005001311) #28 PRDM14 (ENSSVLG00005001279) #29 SLCO5A1 (ENSSVLG00005001204) #30 SULF1 (ENSSVLG00005001105) C8orf34 (ENSSVLG00005001043) PREX2 (ENSSVLG00005000982) CPA6 (ENSSVLG00005000928) ENSSVLG00005000910 ARFGEF1 (ENSSVLG00005000887) CSPP1 (ENSSVLG00005000862) COPS5 (ENSSVLG00005000836) Eurasian red squirrel MODERN SPECIES 13 ENSSVLG00005003891 ENSSVLG00005003941 ENSSVLG00005003956 ENSSVLG00005003973 ENSSVLG00005003992 ENSSVLG00005004004 ENSSVLG00005004015 ENSSVLG00005004033 ENSSVLG00005004042 ENSSVLG00005004081 ENSSVLG00005004183 ZNF582 (ENSSVLG00005004324) ENSSVLG00005004363 ENSSVLG00005004387 ENSSVLG00005004400 ENSSVLG00005004408 #22 ENSSVLG00005004422 ENSSVLG00005004455 ENSSVLG00005004485 ENSSVLG00005004508 ENSSVLG00005004616 ENSSVLG00005004768 ENSSVLG00005004794 ENSSVLG00005004849 ENSSVLG00005004862 ENSSVLG00005004891 ENSSVLG00005004910 MBL2 (ENSSVLG00005004931) DKK1 (ENSSVLG00005004962) ENSSVLG00005005006 ENSSVLG00005005092 Hystricomorpha ANCESTRAL SPECIES 12 ENSGT00940000159124 ENSGT00940000156130.b #7 ENSGT00390000000742 #8 ENSGT00390000018710 #9 ENSGT00390000011717 #10 ENSGT00940000156908 #11 ENSGT00940000154977 #12 ENSGT00940000157063 #14 ENSGT00950000182878.b.a.c.a.b #15 ENSGT00700000106212 #16 ENSGT00390000008325.b.b #17 ENSGT00940000155268 #18 ENSGT00940000161902.a.a #19 ENSGT00940000156118 #20 ENSGT00940000160438 #21 ENSGT00950000182978.A.a.b.a #22 ENSGT01090000260093.a #23 ENSGT00390000001710 #24 ENSGT00510000046470.a.a.a.d.a #25 ENSGT00950000183021.a.a.b #28 ENSGT00940000159454 #29 ENSGT01080000257410.B.a #30 ENSGT00940000157544 ENSGT00390000005870 ENSGT00940000155894 ENSGT00940000159307 ENSGT00940000157108 ENSGT00390000015084.d ENSGT00550000074850 ENSGT00940000158260 ENSGT00940000162447 Hystricomorpha_a ANCESTRAL SPECIES 9 ENSGT00940000159124 ENSGT00940000156130.b #7 ENSGT00390000000742 #8 ENSGT00390000018710 #9 ENSGT00390000011717 #10 ENSGT00940000156908 #11 ENSGT00940000154977 #12 ENSGT00940000157063 #14 ENSGT00950000182878.b.a.c.a.b.n #15 ENSGT00700000106212 #16 ENSGT00390000008325.b.b #17 ENSGT00940000155268 #18 ENSGT00940000161902.a.a #19 ENSGT00940000156118 #20 ENSGT00940000160438 #21 ENSGT00950000182978.A.a.b.a #22 ENSGT01090000260093.a #23 ENSGT00390000001710 #24 ENSGT00510000046470.a.a.a.d.a #25 ENSGT00950000183021.a.a.b #28 ENSGT00940000159454 #29 ENSGT01080000257410.B.a #30 ENSGT00940000157544 ENSGT00390000005870 ENSGT00940000155894 ENSGT00940000159307 ENSGT00940000157108 ENSGT00390000015084.d ENSGT00550000074850 ENSGT00940000158260 ENSGT00940000162447 Hystricomorpha_b ANCESTRAL SPECIES 25 ENSGT00940000156130.b #7 ENSGT00390000000742 #8 ENSGT00390000018710 #9 ENSGT00390000011717 #10 ENSGT00940000156908 #11 ENSGT00940000154977 #12 ENSGT00940000157063 #14 ENSGT00950000182878.b.a.c.a.b.n #15 ENSGT00700000106212 #16 ENSGT00390000008325.b.b #17 ENSGT00940000155268 #18 ENSGT00940000161902.a.a #19 ENSGT00940000164329 ENSGT00940000156118 #20 ENSGT00940000160438 #21 ENSGT00950000182978.A.a.b.a #22 ENSGT01090000260093.a #23 ENSGT00390000001710 #24 ENSGT00510000046470.a.a.a.d.a #25 ENSGT00950000183021.a.a.b #28 ENSGT00940000159454 #29 ENSGT01080000257410.B.a #30 ENSGT00940000157544 ENSGT00390000005870 ENSGT00940000155894 ENSGT00940000159307 ENSGT00940000157108 ENSGT00390000015084.d ENSGT00550000074850 ENSGT00940000158260 ENSGT00940000162447 Degu MODERN SPECIES 132 LY96 (ENSODEG00000004007) #8 TMEM70 (ENSODEG00000003940) #9 ENSODEG00000003911 #10 UBE2W (ENSODEG00000003806) #11 STAU2 (ENSODEG00000003610) #12 RDH10 (ENSODEG00000003490) #14 ENSODEG00000004457 #15 C8orf89 (ENSODEG00000004421) #16 SBSPON (ENSODEG00000004392) #17 ENSODEG00000004364 ENSODEG00000004166 #18 ENSODEG00000004130 KCNB2 (ENSODEG00000004106) #19 TRPA1 (ENSODEG00000004465) #20 MSC (ENSODEG00000004396) #21 EYA1 (ENSODEG00000003994) #22 ENSODEG00000003933 ENSODEG00000003759 ENSODEG00000019011 XKR9 (ENSODEG00000003655) #23 LACTB2 (ENSODEG00000003774) #24 TRAM1 (ENSODEG00000003735) #25 ENSODEG00000018956 NCOA2 (ENSODEG00000003435) #28 PRDM14 (ENSODEG00000003245) #29 ENSODEG00000018928 SLCO5A1 (ENSODEG00000005815) #30 SULF1 (ENSODEG00000005337) ENSODEG00000004397 ENSODEG00000004347 ENSODEG00000004297 Long-tailed chinchilla MODERN SPECIES 151 GDAP1 (ENSCLAG00000002271) JPH1 (ENSCLAG00000002323) #7 LY96 (ENSCLAG00000002393) #8 ENSCLAG00000002465 #9 ENSCLAG00000002529 #10 UBE2W (ENSCLAG00000002672) #11 STAU2 (ENSCLAG00000001824) #12 RDH10 (ENSCLAG00000002112) #14 ENSCLAG00000002143 #15 C8orf89 (ENSCLAG00000002274) #16 SBSPON (ENSCLAG00000002049) #17 TERF1 (ENSCLAG00000002076) #18 ENSCLAG00000002142 TRPA1 (ENSCLAG00000002418) #20 MSC (ENSCLAG00000002927) #21 EYA1 (ENSCLAG00000003062) #22 XKR9 (ENSCLAG00000004198) #23 LACTB2 (ENSCLAG00000001647) #24 TRAM1 (ENSCLAG00000001706) #25 NCOA2 (ENSCLAG00000001878) #28 PRDM14 (ENSCLAG00000001937) #29 SLCO5A1 (ENSCLAG00000001974) #30 SULF1 (ENSCLAG00000002339) C8orf34 (ENSCLAG00000002539) PREX2 (ENSCLAG00000002871) CPA6 (ENSCLAG00000003671) ARFGEF1 (ENSCLAG00000003828) ENSCLAG00000002081 COPS5 (ENSCLAG00000002121) PPP1R42 (ENSCLAG00000002290) TCF24 (ENSCLAG00000002343) Guinea pig MODERN SPECIES GDAP1 (ENSCPOG00000002277) JPH1 (ENSCPOG00000002273) #7 LY96 (ENSCPOG00000033283) #8 TMEM70 (ENSCPOG00000031120) #9 ELOC (ENSCPOG00000032030) #10 UBE2W (ENSCPOG00000008803) #11 STAU2 (ENSCPOG00000015001) #12 ENSCPOG00000000770 #14 RPL7 (ENSCPOG00000004140) #15 C8orf89 (ENSCPOG00000033934) #16 SBSPON (ENSCPOG00000010933) #17 TERF1 (ENSCPOG00000009638) #18 KCNB2 (ENSCPOG00000000689) #19 Trpa1 (ENSCPOG00000011519) #20 MSC (ENSCPOG00000038612) #21 EYA1 (ENSCPOG00000000714) #22 LACTB2 (ENSCPOG00000007604) #24 TRAM1 (ENSCPOG00000008533) #25 NCOA2 (ENSCPOG00000000493) #28 PRDM14 (ENSCPOG00000027176) #29 SLCO5A1 (ENSCPOG00000032623) #30 SULF1 (ENSCPOG00000000180) ENSCPOG00000008521 PREX2 (ENSCPOG00000002807) CPA6 (ENSCPOG00000012028) ARFGEF1 (ENSCPOG00000014908) ENSCPOG00000008950 ENSCPOG00000030067 COPS5 (ENSCPOG00000011793) TCF24 (ENSCPOG00000014534) MCMDC2 (ENSCPOG00000007493) Naked mole-rat female MODERN SPECIES 13 JPH1 (ENSHGLG00000016053) #7 LY96 (ENSHGLG00000017254) #8 TMEM70 (ENSHGLG00000042950) #9 TCEB1 (ENSHGLG00000042986) #10 UBE2W (ENSHGLG00000016745) #11 STAU2 (ENSHGLG00000014888) #12 RDH10 (ENSHGLG00000013673) #14 RPL7 (ENSHGLG00000017000) #15 SBSPON (ENSHGLG00000044318) #17 Terf1 (ENSHGLG00000013062) #18 ENSHGLG00000021368 KCNB2 (ENSHGLG00000017013) #19 TRPA1 (ENSHGLG00000017879) #20 MSC (ENSHGLG00000040745) #21 ENSHGLG00000038455 EYA1 (ENSHGLG00000019347) #22 ENSHGLG00000018393 XKR9 (ENSHGLG00000033679) #23 ENSHGLG00000006207 #24 TRAM1 (ENSHGLG00000008235) #25 ENSHGLG00000047012 ENSHGLG00000021028 ENSHGLG00000035853 #27 NCOA2 (ENSHGLG00000016603) #28 PRDM14 (ENSHGLG00000016615) #29 ENSHGLG00000047939 SLCO5A1 (ENSHGLG00000007007) #30 SULF1 (ENSHGLG00000015701) ENSHGLG00000042606 ENSHGLG00000039218 ENSHGLG00000018481