Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00940000153352.B	ENSGT00400000024767	ENSGT00940000155809	ENSGT00940000155257	ENSGT00940000157716 #7	ENSGT01030000234563.b.a.b.b.a #12	ENSGT01030000234563.b.a.b.b.b #13	ENSGT00530000063534.b #14	ENSGT01050000244827.D.b.b	ENSGT00940000162030 #15	ENSGT00940000155351 #16	ENSGT00530000064714 #18	ENSGT00390000018550	ENSGT00940000161242 #19	ENSGT00940000156184 #21	ENSGT00390000000909 #22	ENSGT00940000157732 #23	ENSGT00940000156696.B #24	ENSGT01030000234610.b.a.b.b #25	ENSGT01030000234610.b.a.b.a #26	ENSGT01030000234610.b.a.a #27	ENSGT00390000012228 #28	ENSGT00390000015489 #29	ENSGT00940000153342.a #30	ENSGT00940000158034 #32	ENSGT00940000154418.a.a #33	ENSGT00940000162369 #34	ENSGT00940000159034 #36	ENSGT00390000001742.a #37	ENSGT00390000015849	ENSGT00940000155588.b
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000159529	ENSGT00940000153352.B	ENSGT00940000155809	ENSGT00940000155257	ENSGT00940000157716 #7	ENSGT01030000234563.b.a.b.b.a #12	ENSGT01030000234563.b.a.b.b.b #13	ENSGT00530000063534.b #14	ENSGT01050000244827.D.b.b	ENSGT00940000162030 #15	ENSGT00940000155351 #16	ENSGT00530000064714 #18	ENSGT00390000018550	ENSGT00940000161242 #19	ENSGT00940000156184 #21	ENSGT00390000000909 #22	ENSGT00940000157732 #23	ENSGT00940000156696.B #24	ENSGT01030000234610.b.a.b.b #25	ENSGT01030000234610.b.a.b.a #26	ENSGT01030000234610.b.a.a #27	ENSGT00390000012228 #28	ENSGT00390000015489 #29	ENSGT00940000153342.a #30	ENSGT00940000158034 #32	ENSGT00940000154418.a.a #33	ENSGT00940000162369 #34	ENSGT00940000159034 #36	ENSGT00390000001742.a #37	ENSGT00390000015849	ENSGT00940000155588.b
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00940000159529	ENSGT00940000153352.B	ENSGT00940000155809	ENSGT00940000155257	ENSGT00940000157716 #7	ENSGT01030000234563.b.a.b.b.a #12	ENSGT01030000234563.b.a.b.b.b #13	ENSGT00530000063534.b #14	ENSGT01050000244827.D.b.b	ENSGT00940000162030 #15	ENSGT00940000155351 #16	ENSGT00530000064714 #18	ENSGT00390000018550	ENSGT00940000161242 #19	ENSGT00940000156184 #21	ENSGT00390000000909 #22	ENSGT00940000157732 #23	ENSGT00940000156696.B #24	ENSGT01030000234610.b.a.b.b #25	ENSGT01030000234610.b.a.b.a #26	ENSGT01030000234610.b.a.a #27	ENSGT00390000012228 #28	ENSGT00390000015489 #29	ENSGT00940000153342.a #30	ENSGT00940000158034 #32	ENSGT00940000154418.a.a #33	ENSGT00940000162369 #34	ENSGT00940000159034 #36	ENSGT00390000001742.a #37	ENSGT00390000015849	ENSGT00940000155588.b
Hystricomorpha_b	ANCESTRAL SPECIES	14	ENSGT00940000159529	ENSGT00940000153352.B	ENSGT00940000155809	ENSGT00940000155257	ENSGT00940000157716 #7	ENSGT01030000234563.b.a.b.b.a #12	ENSGT01030000234563.b.a.b.b.b #13	ENSGT00530000063534.b #14	ENSGT01050000244827.D.b.b	ENSGT00940000162030 #15	ENSGT00940000155351 #16	ENSGT00530000064714 #18	ENSGT00390000018550	ENSGT00940000168158	ENSGT00940000156184 #21	ENSGT00390000000909 #22	ENSGT00940000157732 #23	ENSGT00940000156696.B #24	ENSGT01030000234610.b.a.b.b #25	ENSGT01030000234610.b.a.b.a #26	ENSGT01030000234610.b.a.a #27	ENSGT00390000012228 #28	ENSGT00390000015489 #29	ENSGT00940000153342.a #30	ENSGT00940000158034 #32	ENSGT00940000154418.a.a #33	ENSGT00940000162369 #34	ENSGT00940000159034 #36	ENSGT00390000001742.a #37	ENSGT00390000015849	ENSGT00940000155588.b
Degu	MODERN SPECIES	83	XPNPEP1 (ENSODEG00000008053) #7	ENSODEG00000011498 #8	ENSODEG00000008841 #9	ENSODEG00000008470 #10	ENSODEG00000007723 #11	SORCS1 (ENSODEG00000008187) #12	SORCS3 (ENSODEG00000009208) #13	CFAP58 (ENSODEG00000011571) #14	GSTO2 (ENSODEG00000007911) #15	GSTO1 (ENSODEG00000011067) #16	ENSODEG00000019763 #17	CFAP43 (ENSODEG00000009391) #18	COL17A1 (ENSODEG00000007918) #19	ENSODEG00000008493 #20	SLK (ENSODEG00000008144) #21	STN1 (ENSODEG00000007270) #22	SH3PXD2A (ENSODEG00000009308) #23	NEURL1 (ENSODEG00000007869) #24	CALHM3 (ENSODEG00000007501) #25	CALHM1 (ENSODEG00000008264) #26	CALHM2 (ENSODEG00000008107) #27	PDCD11 (ENSODEG00000008079) #28	ENSODEG00000009533 #29	TAF5 (ENSODEG00000009100) #30	ENSODEG00000007978 #31	PCGF6 (ENSODEG00000007645) #32	INA (ENSODEG00000008267) #33	NT5C2 (ENSODEG00000012028) #34	ENSODEG00000009282 #35	CNNM2 (ENSODEG00000008114) #36	AS3MT (ENSODEG00000008429) #37
Sciuridae	ANCESTRAL SPECIES	21	ENSGT00940000155809	ENSGT00940000155257	ENSGT00940000154259.l.k.b	ENSGT00940000157716 #7	ENSGT00950000182960.a.a.a.b.eb	ENSGT01030000234563.b.a.b.b.a #12	ENSGT01030000234563.b.a.b.b.b #13	ENSGT00530000063534.b #14	ENSGT01050000244827.D.b.b	ENSGT00940000162030 #15	ENSGT00940000155351 #16	ENSGT00530000064714 #18	ENSGT00390000018550	ENSGT00940000161242 #19	ENSGT00940000156184 #21	ENSGT00390000000909 #22	ENSGT00940000157732 #23	ENSGT00940000156696.B #24	ENSGT01030000234610.b.a.b.b #25	ENSGT01030000234610.b.a.b.a #26	ENSGT01030000234610.b.a.a #27	ENSGT00390000012228 #28	ENSGT00390000015489 #29	ENSGT00940000153342.a #30	ENSGT00940000158034 #32	ENSGT00940000154418.a.a #33	ENSGT00940000162369 #34	ENSGT00940000159034 #36	ENSGT00390000001742.a #37	ENSGT00390000015849	ENSGT00940000155588.b
Marmotini	ANCESTRAL SPECIES	16	ENSGT00940000155809	ENSGT00940000155257	ENSGT00940000154259.l.k.b	ENSGT00940000157716 #7	ENSGT00950000182960.a.a.a.b.eb	ENSGT01030000234563.b.a.b.b.a #12	ENSGT01030000234563.b.a.b.b.b #13	ENSGT00530000063534.b #14	ENSGT01050000244827.D.b.b	ENSGT00940000162030 #15	ENSGT00940000155351 #16	ENSGT00530000064714 #18	ENSGT00390000018550	ENSGT00940000161242 #19	ENSGT00940000156184 #21	ENSGT00390000000909 #22	ENSGT00940000157732 #23	ENSGT00940000156696.B #24	ENSGT01030000234610.b.a.b.b #25	ENSGT01030000234610.b.a.b.a #26	ENSGT01030000234610.b.a.a #27	ENSGT00390000012228 #28	ENSGT00390000015489 #29	ENSGT00940000153342.a #30	ENSGT00940000158034 #32	ENSGT00940000154418.a.a #33	ENSGT00940000163289.b	ENSGT00940000162369 #34	ENSGT00940000159034 #36	ENSGT00390000001742.a #37	ENSGT00390000015849
Marmotini_b	ANCESTRAL SPECIES	76							ENSGT01030000234563.b.a.b.b.b #13	ENSGT00530000063534.b #14	ENSGT01050000244827.D.b.b	ENSGT00940000162030 #15	ENSGT00940000155351 #16	ENSGT00530000064714 #18	ENSGT00390000018550	ENSGT00940000161242 #19	ENSGT00940000156184 #21	ENSGT00390000000909 #22	ENSGT00940000157732 #23	ENSGT00940000156696.B #24	ENSGT01030000234610.b.a.b.b #25	ENSGT01030000234610.b.a.b.a #26	ENSGT01030000234610.b.a.a #27	ENSGT00390000012228 #28	ENSGT00390000015489 #29	ENSGT00940000153342.a #30	ENSGT00940000158034 #32	ENSGT00940000154418.a.a #33	ENSGT00940000163289.b	ENSGT00940000162369 #34	ENSGT00940000159034 #36	ENSGT00390000001742.a #37	ENSGT00390000015849