Mus	ANCESTRAL SPECIES	3	ENSGT00940000158635	ENSGT00940000159124	ENSGT00940000156130.b #7	ENSGT00390000000742 #8	ENSGT00390000018710 #9	ENSGT00390000011717 #10	ENSGT00940000156908 #11	ENSGT00940000154977 #12	ENSGT00940000157063 #13	ENSGT00950000182878.b.a.c.a.b #14	ENSGT00700000106212 #15	ENSGT00390000008325.b.b #16	ENSGT00940000155268 #17	ENSGT00940000156118 #20	ENSGT00940000160438 #21	ENSGT00950000182978.A.a.b.a #22	ENSGT01090000260093.a #23	ENSGT00390000001710 #24	ENSGT00510000046470.a.a.a.d.a #25	ENSGT00950000183021.a.a.b #26	ENSGT00940000159454 #27	ENSGT01080000257410.B.a #28	ENSGT00940000157544 #29	ENSGT00390000005870 #31	ENSGT00940000155894 #32	ENSGT00940000159307 #33	ENSGT00940000157108 #34	ENSGT00390000015084.d #35	ENSGT00550000074850 #36	ENSGT00940000158260 #37	ENSGT00940000162447
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000158635	ENSGT00940000159124	ENSGT00940000156130.b #7	ENSGT00390000000742 #8	ENSGT00390000018710 #9	ENSGT00390000011717 #10	ENSGT00940000156908 #11	ENSGT00940000154977 #12	ENSGT00940000157063 #13	ENSGT00950000182878.b.a.c.a.b #14	ENSGT00700000106212 #15	ENSGT00390000008325.b.b #16	ENSGT00940000155268 #17	ENSGT00940000156118 #20	ENSGT00940000160438 #21	ENSGT00950000182978.A.a.b.a #22	ENSGT01090000260093.a #23	ENSGT00390000001710 #24	ENSGT00510000046470.a.a.a.d.a #25	ENSGT00950000183021.a.a.b #26	ENSGT00940000159454 #27	ENSGT01080000257410.B.a #28	ENSGT00940000157544 #29	ENSGT00390000005870 #31	ENSGT00940000155894 #32	ENSGT00940000159307 #33	ENSGT00940000157108 #34	ENSGT00390000015084.d #35	ENSGT00550000074850 #36	ENSGT00940000158260 #37	ENSGT00940000162447
Mus_B	ANCESTRAL SPECIES	21	ENSGT00940000158635	ENSGT00940000159124	ENSGT00940000156130.b #7	ENSGT00390000000742 #8	ENSGT00390000018710 #9	ENSGT00390000011717 #10	ENSGT00940000156908 #11	ENSGT00940000154977 #12	ENSGT00940000157063 #13	ENSGT00950000182878.b.a.c.a.b #14	ENSGT00700000106212 #15	ENSGT00390000008325.b.b #16	ENSGT00940000155268 #17	ENSGT00940000156118 #20	ENSGT00940000160438 #21	ENSGT00950000182978.A.a.b.a #22	ENSGT01090000260093.a #23	ENSGT00390000001710 #24	ENSGT00510000046470.a.a.a.d.a #25	ENSGT00950000183021.a.a.b #26	ENSGT00940000159454 #27	ENSGT01080000257410.B.a #28	ENSGT00940000157544 #29	ENSGT00390000005870 #31	ENSGT00940000155894 #32	ENSGT00940000159307 #33	ENSGT00940000157108 #34	ENSGT00390000015084.d #35	ENSGT00550000074850 #36	ENSGT00940000158260 #37	ENSGT00940000162447
Mus_C	ANCESTRAL SPECIES	33														ENSGT00940000156118 #20	ENSGT00940000160438 #21	ENSGT00950000182978.A.a.b.a #22	ENSGT01090000260093.a #23	ENSGT00390000001710 #24	ENSGT00510000046470.a.a.a.d.a #25	ENSGT00950000183021.a.a.b #26	ENSGT00940000159454 #27	ENSGT01080000257410.B.a #28	ENSGT00940000157544 #29	ENSGT00390000005870 #31	ENSGT00940000155894 #32	ENSGT00940000159307 #33	ENSGT00940000157108 #34	ENSGT00390000015084.d #35	ENSGT00550000074850 #36	ENSGT00940000158260 #37	ENSGT00940000162447
spretus	MODERN SPECIES		Jph1 (MGP_SPRETEiJ_G0014777) #7	Ly96 (MGP_SPRETEiJ_G0014776) #8	Tmem70 (MGP_SPRETEiJ_G0014775) #9	Eloc (MGP_SPRETEiJ_G0014774) #10	MGP_SPRETEiJ_G0014773 #11	Stau2 (MGP_SPRETEiJ_G0014772) #12	Rdh10 (MGP_SPRETEiJ_G0014771) #13	Rpl7 (MGP_SPRETEiJ_G0014770) #14	4930444P10Rik (MGP_SPRETEiJ_G0014769) #15	Sbspon (MGP_SPRETEiJ_G0014768) #16	Terf1 (MGP_SPRETEiJ_G0014767) #17	Kcnb2 (MGP_SPRETEiJ_G0014766) #18	MGP_SPRETEiJ_G0014765 #19	Trpa1 (MGP_SPRETEiJ_G0014764) #20	Msc (MGP_SPRETEiJ_G0014763) #21	Eya1 (MGP_SPRETEiJ_G0014762) #22	Xkr9 (MGP_SPRETEiJ_G0014761) #23	Lactb2 (MGP_SPRETEiJ_G0014760) #24	Tram1 (MGP_SPRETEiJ_G0014759) #25	Ncoa2 (MGP_SPRETEiJ_G0014758) #26	Prdm14 (MGP_SPRETEiJ_G0014757) #27	Slco5a1 (MGP_SPRETEiJ_G0014756) #28	Sulf1 (MGP_SPRETEiJ_G0014755) #29	MGP_SPRETEiJ_G0014754 #30	A830018L16Rik (MGP_SPRETEiJ_G0014753) #31	Prex2 (MGP_SPRETEiJ_G0014752) #32	Cpa6 (MGP_SPRETEiJ_G0014751) #33	Arfgef1 (MGP_SPRETEiJ_G0014750) #34	MGP_SPRETEiJ_G0014749 #35	Cops5 (MGP_SPRETEiJ_G0014748) #36	Ppp1r42 (MGP_SPRETEiJ_G0014747) #37
Steppe mouse	MODERN SPECIES	2514														Msc (ENSMSIG00000004033) #21	ENSMSIG00000004046	Eya1 (ENSMSIG00000004087) #22
Mouse	MODERN SPECIES		Gdap1 (ENSMUSG00000025777)	Jph1 (ENSMUSG00000042686) #7	Ly96 (ENSMUSG00000025779) #8	Tmem70 (ENSMUSG00000025940) #9	Eloc (ENSMUSG00000079658) #10	Ube2w (ENSMUSG00000025939) #11	Stau2 (ENSMUSG00000025920) #12	Rdh10 (ENSMUSG00000025921) #13	Rpl7 (ENSMUSG00000043716) #14	4930444P10Rik (ENSMUSG00000067795) #15	Sbspon (ENSMUSG00000032719) #16	Terf1 (ENSMUSG00000025925) #17	Kcnb2 (ENSMUSG00000092083) #18	Trpa1 (ENSMUSG00000032769) #20	Msc (ENSMUSG00000025930) #21	Eya1 (ENSMUSG00000025932) #22	Xkr9 (ENSMUSG00000067813) #23	Lactb2 (ENSMUSG00000025937) #24	Tram1 (ENSMUSG00000025935) #25	Ncoa2 (ENSMUSG00000005886) #26	Prdm14 (ENSMUSG00000042414) #27	Slco5a1 (ENSMUSG00000025938) #28	Sulf1 (ENSMUSG00000016918) #29	A830018L16Rik (ENSMUSG00000057715) #31	Prex2 (ENSMUSG00000048960) #32	Cpa6 (ENSMUSG00000042501) #33	Arfgef1 (ENSMUSG00000067851) #34	Cspp1 (ENSMUSG00000056763) #35	Cops5 (ENSMUSG00000025917) #36	Ppp1r42 (ENSMUSG00000025916) #37	Tcf24 (ENSMUSG00000099032)
Ryukyu mouse	MODERN SPECIES		Gdap1 (MGP_CAROLIEiJ_G0013973)	Jph1 (MGP_CAROLIEiJ_G0013972) #7	Ly96 (MGP_CAROLIEiJ_G0013971) #8	Tmem70 (MGP_CAROLIEiJ_G0013970) #9	Eloc (MGP_CAROLIEiJ_G0013969) #10	MGP_CAROLIEiJ_G0013968 #11	Stau2 (MGP_CAROLIEiJ_G0013967) #12	Rdh10 (MGP_CAROLIEiJ_G0013966) #13	Rpl7 (MGP_CAROLIEiJ_G0013965) #14	4930444P10Rik (MGP_CAROLIEiJ_G0013964) #15	Sbspon (MGP_CAROLIEiJ_G0013963) #16	Terf1 (MGP_CAROLIEiJ_G0013962) #17	Kcnb2 (MGP_CAROLIEiJ_G0013961) #18	Trpa1 (MGP_CAROLIEiJ_G0013960) #20	Msc (MGP_CAROLIEiJ_G0013959) #21	Eya1 (MGP_CAROLIEiJ_G0013958) #22	Xkr9 (MGP_CAROLIEiJ_G0013957) #23	Lactb2 (MGP_CAROLIEiJ_G0013956) #24	Tram1 (MGP_CAROLIEiJ_G0013955) #25	Ncoa2 (MGP_CAROLIEiJ_G0013954) #26	Prdm14 (MGP_CAROLIEiJ_G0013953) #27	Slco5a1 (MGP_CAROLIEiJ_G0013952) #28	Sulf1 (MGP_CAROLIEiJ_G0013951) #29	A830018L16Rik (MGP_CAROLIEiJ_G0013950) #31	Prex2 (MGP_CAROLIEiJ_G0013949) #32	Cpa6 (MGP_CAROLIEiJ_G0013948) #33	Arfgef1 (MGP_CAROLIEiJ_G0013947) #34	Cspp1 (MGP_CAROLIEiJ_G0013946) #35	Cops5 (MGP_CAROLIEiJ_G0013945) #36	Ppp1r42 (MGP_CAROLIEiJ_G0013944) #37	Tcf24 (MGP_CAROLIEiJ_G0013943)
Shrew mouse	MODERN SPECIES	14	Gdap1 (MGP_PahariEiJ_G0023846)	Jph1 (MGP_PahariEiJ_G0023847) #7	Ly96 (MGP_PahariEiJ_G0023848) #8	Tmem70 (MGP_PahariEiJ_G0023849) #9	MGP_PahariEiJ_G0023850	MGP_PahariEiJ_G0023851 #11	Stau2 (MGP_PahariEiJ_G0023852) #12	Rdh10 (MGP_PahariEiJ_G0023853) #13	Rpl7 (MGP_PahariEiJ_G0023854) #14	MGP_PahariEiJ_G0023855 #15	Sbspon (MGP_PahariEiJ_G0023856) #16	Terf1 (MGP_PahariEiJ_G0023857) #17	Kcnb2 (MGP_PahariEiJ_G0023858) #18	Trpa1 (MGP_PahariEiJ_G0023859) #20	Msc (MGP_PahariEiJ_G0023860) #21	Eya1 (MGP_PahariEiJ_G0023861) #22	Xkr9 (MGP_PahariEiJ_G0023862) #23	Lactb2 (MGP_PahariEiJ_G0023863) #24	Tram1 (MGP_PahariEiJ_G0023864) #25	Ncoa2 (MGP_PahariEiJ_G0023865) #26	Prdm14 (MGP_PahariEiJ_G0023866) #27	Slco5a1 (MGP_PahariEiJ_G0023867) #28	Sulf1 (MGP_PahariEiJ_G0023868) #29	A830018L16Rik (MGP_PahariEiJ_G0023869) #31	Prex2 (MGP_PahariEiJ_G0023870) #32	Cpa6 (MGP_PahariEiJ_G0023871) #33	Arfgef1 (MGP_PahariEiJ_G0023872) #34	Cspp1 (MGP_PahariEiJ_G0023873) #35	Cops5 (MGP_PahariEiJ_G0023874) #36	Ppp1r42 (MGP_PahariEiJ_G0023875) #37	Tcf24 (MGP_PahariEiJ_G0023876)