Bovidae	ANCESTRAL SPECIES	6	ENSGT00530000063947.C	ENSGT01030000234582.e.b.h ##12	ENSGT00970000197259	ENSGT01030000234582.e.b.g.b.a.a.a.a.b ##12	ENSGT01030000234582.e.b.g.b.a.a.b #10	ENSGT01030000234582.e.b.g.a.a ##12	ENSGT01030000234582.e.b.g.a.b #11	ENSGT01030000234582.f.a.b #12	ENSGT00390000012877 #13	ENSGT00940000158413 #16	ENSGT00530000063516.a.a.c.b #17	ENSGT00440000033232.d	ENSGT00390000009554 #18	ENSGT00940000162288 #19	ENSGT00940000162702 #21	ENSGT00940000160984 #22	ENSGT00730000110920.a #23	ENSGT00940000163174	ENSGT00940000156536 #24	ENSGT00940000155350 #25	ENSGT00390000005534.b.b.c.a	ENSGT00940000156257 #29	ENSGT00390000001698 #30	ENSGT00940000159545 #31	ENSGT00390000007623 #32	ENSGT00530000063582.b #33	ENSGT00730000111271 #35	ENSGT00940000157925 #36	ENSGT00940000153222.a.b.b.a #37	ENSGT00390000007725.B.d	ENSGT00940000159058
Caprinae	ANCESTRAL SPECIES	6	ENSGT00940000156163	ENSGT00530000063947.C	ENSGT01030000234582.e.b.h ##12	ENSGT01030000234582.e.b.g.b.b #7	ENSGT01030000234582.e.b.g.b.a.b #8	ENSGT01030000234582.e.b.g.b.a.a.a.a.a.a #9	ENSGT01030000234582.e.b.g.b.a.a.b #10	ENSGT01030000234582.e.b.g.a.b #11	ENSGT01030000234582.f.a.b #12	ENSGT00390000012877 #13	ENSGT00940000158413 #16	ENSGT00530000063516.a.a.c.b #17	ENSGT00390000009554 #18	ENSGT00940000162288 #19	ENSGT00940000162702 #21	ENSGT00940000160984 #22	ENSGT00730000110920.a #23	ENSGT00940000163174	ENSGT00940000156536 #24	ENSGT00940000155350 #25	ENSGT00390000005534.b.b.c.a	ENSGT00390000001698 #30	ENSGT00940000156257 #29	ENSGT00940000159545 #31	ENSGT00390000007623 #32	ENSGT00530000063582.b #33	ENSGT00730000111271 #35	ENSGT00940000157925 #36	ENSGT00940000153222.a.b.b.a #37	ENSGT00390000007725.B.d	ENSGT00940000159058
Rambouillet Sheep	MODERN SPECIES	6	ENSOARG00020005200 #7	ENSOARG00020005275 #8	ENSOARG00020005318 #9	ENSOARG00020005345 #10	ENSOARG00020005412 #11	DGAT2 (ENSOARG00020005462) #12	UVRAG (ENSOARG00020005557) #13	ENSOARG00020005653 #14	ENSOARG00020005727 #15	WNT11 (ENSOARG00020006304) #16	THAP12 (ENSOARG00020006375) #17	EMSY (ENSOARG00020006533) #18	LRRC32 (ENSOARG00020007119) #19	ENSOARG00020007148 #20	ENSOARG00020007184 #21	TSKU (ENSOARG00020007221) #22	ACER3 (ENSOARG00020007254) #23	CAPN5 (ENSOARG00020007502) #24	MYO7A (ENSOARG00020007565) #25	ENSOARG00020007670 #26	ENSOARG00020007682 #27	ENSOARG00020007871 #28	ANO3 (ENSOARG00020007896) #29	MUC15 (ENSOARG00020008218) #30	SLC5A12 (ENSOARG00020008429) #31	FIBIN (ENSOARG00020009250) #32	BBOX1 (ENSOARG00020009280) #33	ENSOARG00020009346 #34	CCDC34 (ENSOARG00020009403) #35	LGR4 (ENSOARG00020009461) #36	LIN7C (ENSOARG00020010086) #37
Goat	MODERN SPECIES	6	ENSCHIG00000022165 #7	ENSCHIG00000016754 #8	ENSCHIG00000017465 ##12	ENSCHIG00000016227 ##12	ENSCHIG00000025677 #10	ENSCHIG00000015313 ##12	DGAT2 (ENSCHIG00000010320) #12	UVRAG (ENSCHIG00000025967) #13	WNT11 (ENSCHIG00000021782) #16	ENSCHIG00000008621 #17	GVQW3 (ENSCHIG00000021697)	ENSCHIG00000006745	EMSY (ENSCHIG00000016218) #18	LRRC32 (ENSCHIG00000024280) #19	ENSCHIG00000018605 #21	TSKU (ENSCHIG00000002033) #22	ACER3 (ENSCHIG00000012398) #23	ENSCHIG00000021999	B3GNT6 (ENSCHIG00000003265)	CAPN5 (ENSCHIG00000009860) #24	MYO7A (ENSCHIG00000026841) #25	ENSCHIG00000019797	MUC15 (ENSCHIG00000024039) #30	ANO3 (ENSCHIG00000020980) #29	SLC5A12 (ENSCHIG00000017024) #31	FIBIN (ENSCHIG00000006685) #32	BBOX1 (ENSCHIG00000015708) #33	CCDC34 (ENSCHIG00000016444) #35	LGR4 (ENSCHIG00000027214) #36	LIN7C (ENSCHIG00000012519) #37	BDNF (ENSCHIG00000006804)
Bovinae	ANCESTRAL SPECIES	26	ENSGT01030000234582.e.b.g.b.b #7	ENSGT01030000234582.e.b.g.b.a.b #8	ENSGT01030000234582.e.b.g.b.a.a.a.a.a.a #9	ENSGT00390000007473.d	ENSGT01030000234582.e.b.g.b.a.a.b #10	ENSGT01030000234582.e.b.g.a.a ##12	ENSGT01030000234582.e.b.g.a.b #11	ENSGT01030000234582.f.a.b #12	ENSGT00390000012877 #13	ENSGT00940000158413 #16	ENSGT00530000063516.a.a.c.b #17	ENSGT00440000033232.d	ENSGT00390000009554 #18	ENSGT00940000162288 #19	ENSGT00940000162702 #21	ENSGT00940000160984 #22	ENSGT00730000110920.a #23	ENSGT00960000189459.a	ENSGT00940000163174	ENSGT00940000156536 #24	ENSGT00940000155350 #25	ENSGT00940000156251.f.e.b #27	ENSGT00940000156257 #29	ENSGT00390000001698 #30	ENSGT00940000159545 #31	ENSGT00390000007623 #32	ENSGT00530000063582.b #33	ENSGT00730000111271 #35	ENSGT00940000157925 #36	ENSGT00940000153222.a.b.b.a #37	ENSGT00390000007725.B.d
Bos	ANCESTRAL SPECIES	25	ENSGT01030000234582.e.b.g.b.a.b #8	ENSGT01030000234582.e.b.g.b.a.a.a.a.a.a #9	ENSGT00390000007473.d	ENSGT01030000234582.e.b.g.b.a.a.b #10	ENSGT01030000234582.e.b.g.a.a ##12	ENSGT01030000234582.e.b.g.a.b #11	ENSGT01030000234582.f.a.b #12	ENSGT00390000012877 #13	ENSGT00940000158413 #16	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.b.a.a.a.b	ENSGT00530000063516.a.a.c.b #17	ENSGT00440000033232.d	ENSGT00390000009554 #18	ENSGT00940000162288 #19	ENSGT00940000162702 #21	ENSGT00940000160984 #22	ENSGT00730000110920.a #23	ENSGT00940000153434.a.b.a.b	ENSGT00940000163174	ENSGT00940000156536 #24	ENSGT00940000155350 #25	ENSGT00940000156251.f.e.b #27	ENSGT00940000156257 #29	ENSGT00390000001698 #30	ENSGT00940000159545 #31	ENSGT00390000007623 #32	ENSGT00530000063582.b #33	ENSGT00730000111271 #35	ENSGT00940000157925 #36	ENSGT00940000153222.a.b.b.a #37	ENSGT00390000007725.B.d
Bos_a	ANCESTRAL SPECIES	36					ENSGT01030000234582.e.b.g.b.a.a.b #10	ENSGT01030000234582.e.b.g.a.a ##12	ENSGT01030000234582.e.b.g.a.b #11	ENSGT01030000234582.f.a.b #12	ENSGT00390000012877 #13	ENSGT00940000158413 #16	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.b.a.a.a.b	ENSGT00530000063516.a.a.c.b #17	ENSGT00440000033232.d	ENSGT00390000009554 #18	ENSGT00940000162288 #19	ENSGT00940000160984 #22	ENSGT00730000110920.a #23	ENSGT00940000153434.a.b.a.b	ENSGT00940000163174	ENSGT00940000156536 #24	ENSGT00940000155350 #25	ENSGT00940000156251.f.e.b #27	ENSGT00940000156257 #29	ENSGT00390000001698 #30	ENSGT00940000159545 #31	ENSGT00390000007623 #32	ENSGT00530000063582.b #33	ENSGT00730000111271 #35	ENSGT00940000157925 #36	ENSGT00940000153222.a.b.b.a #37	ENSGT00390000007725.B.d
Wild yak	MODERN SPECIES	2384												WNT11 (ENSBMUG00000002073) #16	THAP12 (ENSBMUG00000002049) #17	EMSY (ENSBMUG00000001724) #18	LRRC32 (ENSBMUG00000001231) #19	TSKU (ENSBMUG00000001213) #22	ENSBMUG00000001207	ENSBMUG00000001193 #23
Domestic yak	MODERN SPECIES	4	GLB1L2 (ENSBGRG00000016150)	ENSBGRG00000016722	ENSBGRG00000016847	ENSBGRG00000016922 #10	ENSBGRG00000016954 ##12	ENSBGRG00000017082 #11	DGAT2 (ENSBGRG00000017136) #12	UVRAG (ENSBGRG00000017246) #13	ENSBGRG00000017482	WNT11 (ENSBGRG00000017533) #16	ENSBGRG00000017662	THAP12 (ENSBGRG00000017688) #17	GVQW3 (ENSBGRG00000017782)	EMSY (ENSBGRG00000017864) #18	LRRC32 (ENSBGRG00000018703) #19	TSKU (ENSBGRG00000018765) #22	ACER3 (ENSBGRG00000018776) #23	ENSBGRG00000018913	B3GNT6 (ENSBGRG00000018932)	CAPN5 (ENSBGRG00000018968) #24	MYO7A (ENSBGRG00000019096) #25	ANO3 (ENSBGRG00000019295) #29	MUC15 (ENSBGRG00000019809) #30	SLC5A12 (ENSBGRG00000019870) #31	FIBIN (ENSBGRG00000020121) #32	BBOX1 (ENSBGRG00000020156) #33	CCDC34 (ENSBGRG00000020253) #35	LGR4 (ENSBGRG00000020409) #36	LIN7C (ENSBGRG00000010637) #37	BDNF (ENSBGRG00000010972)	KIF18A (ENSBGRG00000011059)
Bos_b	ANCESTRAL SPECIES	12	ENSGT00940000161697	ENSGT00940000163592	ENSGT00550000074618.a.b.ab.a.a.a.a	ENSGT01100000263536.B.c.b	ENSGT00390000009948.c.l	ENSGT01040000240444.A.a.a.a.b	ENSGT01100000263536.A.a.a.b	ENSGT00390000012877 #13	ENSGT00940000158413 #16	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.b.a.a.a.b	ENSGT00530000063516.a.a.c.b #17	ENSGT00440000033232.d	ENSGT00390000009554 #18	ENSGT00940000162288 #19	ENSGT00940000162702 #21	ENSGT00940000160984 #22	ENSGT00730000110920.a #23	ENSGT00940000153434.a.b.a.b	ENSGT00940000163174	ENSGT00940000156536 #24	ENSGT00940000155350 #25	ENSGT00940000156257 #29	ENSGT00390000001698 #30	ENSGT00940000159545 #31	ENSGT00390000007623 #32	ENSGT00530000063582.b #33	ENSGT00730000111271 #35	ENSGT00940000157925 #36	ENSGT00940000153222.a.b.b.a #37	ENSGT00390000007725.B.d	ENSGT00940000159058
Hybrid Bos Indicus	MODERN SPECIES	6	ENSBIXG00005010772 ##12	ENSBIXG00005010874 #7	ENSBIXG00005010894	ENSBIXG00005005811 #10	ENSBIXG00005010939	ENSBIXG00005010950 ##12	ENSBIXG00005010977	ENSBIXG00005010986 #11	DGAT2 (ENSBIXG00005011065) #12	WNT11 (ENSBIXG00005011138) #16	ENSBIXG00005011143	THAP12 (ENSBIXG00005011166) #17	EMSY (ENSBIXG00005001090) #18	ENSBIXG00005011397	LRRC32 (ENSBIXG00005001106) #19	TSKU (ENSBIXG00005011515) #22	ENSBIXG00005011531	ENSBIXG00005011563	ACER3 (ENSBIXG00005011649) #23	ENSBIXG00005011687	B3GNT6 (ENSBIXG00005011701)	CAPN5 (ENSBIXG00005001166) #24	MYO7A (ENSBIXG00005006791) #25	ENSBIXG00005012008	MUC15 (ENSBIXG00005001242) #30	ANO3 (ENSBIXG00005001264) #29	SLC5A12 (ENSBIXG00005012257) #31	FIBIN (ENSBIXG00005012271) #32	BBOX1 (ENSBIXG00005000388) #33	CCDC34 (ENSBIXG00005012331) #35	LGR4 (ENSBIXG00005001350) #36
Cow	MODERN SPECIES	6	MAP6 (ENSBTAG00000001028)	MOGAT2 (ENSBTAG00000049519) ##12	ENSBTAG00000053794	ENSBTAG00000047111 #7	ENSBTAG00000017443 ##12	ENSBTAG00000015091 #10	ENSBTAG00000052936	MOGAT2 (ENSBTAG00000037483) #11	UVRAG (ENSBTAG00000016355) #13	WNT11 (ENSBTAG00000010820) #16	THAP12 (ENSBTAG00000031609) #17	GVQW3 (ENSBTAG00000052297)	EMSY (ENSBTAG00000010826) #18	LRRC32 (ENSBTAG00000001301) #19	ENSBTAG00000051627 #21	TSKU (ENSBTAG00000001537) #22	ACER3 (ENSBTAG00000017218) #23	ENSBTAG00000052260	ENSBTAG00000008557	B3GNT6 (ENSBTAG00000047129)	CAPN5 (ENSBTAG00000005034) #24	MYO7A (ENSBTAG00000003955) #25	ANO3 (ENSBTAG00000021855) #29	MUC15 (ENSBTAG00000027126) #30	SLC5A12 (ENSBTAG00000021858) #31	FIBIN (ENSBTAG00000006676) #32	BBOX1 (ENSBTAG00000014847) #33	CCDC34 (ENSBTAG00000021346) #35	LGR4 (ENSBTAG00000002606) #36	LIN7C (ENSBTAG00000001460) #37	BDNF (ENSBTAG00000008134)
American bison	MODERN SPECIES	3168	ENSBBBG00000023073 #8	ENSBBBG00000023075 #9	ENSBBBG00000023080	ENSBBBG00000006059 #10	ENSBBBG00000006061	ENSBBBG00000023102	ENSBBBG00000023116 ##12	ENSBBBG00000023136 #11	DGAT2 (ENSBBBG00000023160) #12	UVRAG (ENSBBBG00000000472) #13	WNT11 (ENSBBBG00000000445) #16	THAP12 (ENSBBBG00000000402) #17	EMSY (ENSBBBG00000023598) #18	LRRC32 (ENSBBBG00000023629) #19	ENSBBBG00000000316	TSKU (ENSBBBG00000006173) #22