Bilateria	DUPLICATION
Bilateria	DUPLICATION
Bilateria	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b #22
Chordata	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b #22
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.a #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.a #22
Euteleostomi	ANCESTRAL SPECIES	857																ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24
Sarcopterygii	ANCESTRAL SPECIES	211										ENSGT00940000164454	ENSGT00950000182835.c.c	ENSGT00940000162980	ENSGT00390000003348	ENSGT00940000155877	ENSGT00940000159438	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000008992 #26	ENSGT00950000183004.a.a.a.b	ENSGT00940000160145.b	ENSGT00530000063168.a.a.b	ENSGT00940000157847	ENSGT00940000156319	ENSGT00940000155170	ENSGT00390000010825.a	ENSGT00940000155614
Tetrapoda	ANCESTRAL SPECIES	86													ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00390000016224	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000164911	ENSGT00940000154471.a.a	ENSGT00940000161969	ENSGT00950000182846.a.b
Amniota	ANCESTRAL SPECIES	40	ENSGT00940000162980	ENSGT00940000164454	ENSGT00950000182835.c.c	ENSGT00530000063540.a	ENSGT00940000159912	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000166196	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37
Mammalia	ANCESTRAL SPECIES	46	ENSGT00940000162980	ENSGT00940000164454	ENSGT00950000182835.c.c	ENSGT00530000063540.a	ENSGT00940000159912	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000183006.A.a.b	ENSGT00950000182824.a.b.b #30	ENSGT00390000016224.j.a	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000166196	ENSGT00940000161383 #33	ENSGT00390000011272
Theria	ANCESTRAL SPECIES	46						ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00390000016224.j.a	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000166196	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34
Eutheria	ANCESTRAL SPECIES	16						ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000166196	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37
Boreoeutheria	ANCESTRAL SPECIES	11	ENSGT00390000000062.x.b	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00390000000062.x.b	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37
Primates	ANCESTRAL SPECIES	23	ENSGT00390000001700.a.b.b	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37
Haplorrhini	ANCESTRAL SPECIES	33	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37
Simiiformes	ANCESTRAL SPECIES	9	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.c #9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00910000147052 #36
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.e #16	ENSGT00940000161880 #17	ENSGT00390000015797.c.a #18	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00910000147052 #36
Cercopithecidae	ANCESTRAL SPECIES	19	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.e #16	ENSGT00940000161880 #17	ENSGT00390000015797.c.a #18	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00910000147052 #36
Cercopithecinae	ANCESTRAL SPECIES	13	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.e #16	ENSGT00940000161880 #17	ENSGT00390000015797.c.a #18	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00910000147052 #36
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00390000001700.a.b.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.c #9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.e #16	ENSGT00940000161880 #17	ENSGT00390000015797.c.a.c.b #18	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00910000147052 #36
Macaca	ANCESTRAL SPECIES	13	ENSGT00940000165830	ENSGT00390000001700.a.b.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.c #9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000162887 #12	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.e #16	ENSGT00940000161880 #17	ENSGT00390000015797.c.a.c.b #18	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00910000147052 #36
Pig-tailed macaque	MODERN SPECIES	390			PNMA6F (ENSMNEG00000031969) #9	ENSMNEG00000039113 #10	PNMA6E (ENSMNEG00000038171) #11	ZFP92 (ENSMNEG00000042434) #12	HAUS7 (ENSMNEG00000036428) #13	BGN (ENSMNEG00000042759) #14	ATP2B3 (ENSMNEG00000044784) #15	CCNQ (ENSMNEG00000042079) #16	DUSP9 (ENSMNEG00000040094) #17	ENSMNEG00000028994 #18	PNCK (ENSMNEG00000040586) #19	SLC6A8 (ENSMNEG00000005457) #20	BCAP31 (ENSMNEG00000028474) #21	ABCD1 (ENSMNEG00000033571) #22	PLXNB3 (ENSMNEG00000032414) #23	SRPK3 (ENSMNEG00000030566) #24	IDH3G (ENSMNEG00000042620) #25	SSR4 (ENSMNEG00000042721) #26	PDZD4 (ENSMNEG00000041450) #27	L1CAM (ENSMNEG00000042796) #28	AVPR2 (ENSMNEG00000029040) #29	ARHGAP4 (ENSMNEG00000039860) #30	NAA10 (ENSMNEG00000034261) #31	RENBP (ENSMNEG00000038526) #32	HCFC1 (ENSMNEG00000033780) #33	IRAK1 (ENSMNEG00000021597) #34	ENSMNEG00000003405 #35	ENSMNEG00000037974 #36	MECP2 (ENSMNEG00000017455) #37
Macaca_a	ANCESTRAL SPECIES	11	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00390000001700.a.b.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.c #9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000162887 #12	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.e #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162843
Rhesus	MODERN SPECIES	327	PNMA3 (ENSMMUG00000010897) ##9	ENSMMUG00000063804	ENSMMUG00000053273	PNMA6F (ENSMMUG00000048764) #9	ENSMMUG00000013386 #10	PNMA6E (ENSMMUG00000045255) #11	ZFP92 (ENSMMUG00000057937) #12	HAUS7 (ENSMMUG00000012739) #13	BGN (ENSMMUG00000012743) #14	ATP2B3 (ENSMMUG00000011478) #15	CCNQ (ENSMMUG00000011480) #16	DUSP9 (ENSMMUG00000056988) #17	PNCK (ENSMMUG00000010585) #19	SLC6A8 (ENSMMUG00000012742) #20	BCAP31 (ENSMMUG00000012744) #21	ABCD1 (ENSMMUG00000012746) #22	SRPK3 (ENSMMUG00000003372) #24	IDH3G (ENSMMUG00000003374) #25	SSR4 (ENSMMUG00000003375) #26	PDZD4 (ENSMMUG00000003377) #27	L1CAM (ENSMMUG00000003379) #28	AVPR2 (ENSMMUG00000064945) #29	ARHGAP4 (ENSMMUG00000000323) #30	NAA10 (ENSMMUG00000000322) #31	RENBP (ENSMMUG00000000320) #32	HCFC1 (ENSMMUG00000000319) #33	TMEM187 (ENSMMUG00000005132)	IRAK1 (ENSMMUG00000018703) #34	MECP2 (ENSMMUG00000018704) #37	ENSMMUG00000006166	ENSMMUG00000055487
Cercopithecinae_b	ANCESTRAL SPECIES	51	ENSGT00390000001700.a.b.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.c #9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.e #16	ENSGT00940000161880 #17	ENSGT00390000015797.c.a.c.b #18	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00910000147052 #36
Olive baboon	MODERN SPECIES	792	PNMA3 (ENSPANG00000008016) ##9	ENSPANG00000040158	PNMA6F (ENSPANG00000035246) #9	ENSPANG00000015246	ENSPANG00000035942 #11	ZFP92 (ENSPANG00000006612) #12	TREX2 (ENSPANG00000039672)	HAUS7 (ENSPANG00000014066) #13	BGN (ENSPANG00000022851) #14	ATP2B3 (ENSPANG00000014878) #15	BCAP31 (ENSPANG00000001625) #21	SLC6A8 (ENSPANG00000010089) #20	PNCK (ENSPANG00000013747) #19	DUSP9 (ENSPANG00000004029) #17	CCNQ (ENSPANG00000026424) #16	ABCD1 (ENSPANG00000025399) #22	PLXNB3 (ENSPANG00000008014) #23	SRPK3 (ENSPANG00000004220) #24	IDH3G (ENSPANG00000023323) #25	SSR4 (ENSPANG00000006591) #26	PDZD4 (ENSPANG00000000291) #27	L1CAM (ENSPANG00000013145) #28	AVPR2 (ENSPANG00000004382) #29	ARHGAP4 (ENSPANG00000010087) #30	NAA10 (ENSPANG00000014390) #31	RENBP (ENSPANG00000008961) #32	HCFC1 (ENSPANG00000024276) #33	TMEM187 (ENSPANG00000050796)	IRAK1 (ENSPANG00000015781) #34	MECP2 (ENSPANG00000011691) #37	OPN1LW (ENSPANG00000011135)
Cercopithecinae_d	ANCESTRAL SPECIES	141			ENSGT01030000234522.C.b.e.a.a.a.a.a.b.c #9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000162887 #12	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.e #16	ENSGT00940000161880 #17	ENSGT00390000015797.c.a.c.b #18	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00910000147052 #36	ENSGT00530000063687.b.b.b #37
Sooty mangabey	MODERN SPECIES	286									ENSCATG00000032628	CCNQ (ENSCATG00000013187) #16	DUSP9 (ENSCATG00000009164) #17	ENSCATG00000003729 #18	PNCK (ENSCATG00000041955) #19	SLC6A8 (ENSCATG00000001771) #20	BCAP31 (ENSCATG00000043253) #21	ABCD1 (ENSCATG00000042536) #22	PLXNB3 (ENSCATG00000037895) #23	SRPK3 (ENSCATG00000045096) #24	IDH3G (ENSCATG00000042112) #25	SSR4 (ENSCATG00000006344) #26	PDZD4 (ENSCATG00000043997) #27	L1CAM (ENSCATG00000041515) #28	AVPR2 (ENSCATG00000036647) #29	ARHGAP4 (ENSCATG00000042499) #30	NAA10 (ENSCATG00000038709) #31	RENBP (ENSCATG00000037009) #32	HCFC1 (ENSCATG00000022004) #33	IRAK1 (ENSCATG00000044264) #34	ENSCATG00000020302 #35	ENSCATG00000018741 #36	MECP2 (ENSCATG00000017038) #37
Drill	MODERN SPECIES	1411			PNMA6F (ENSMLEG00000035105) #9	ENSMLEG00000040255 #10	PNMA6E (ENSMLEG00000041204) #11	ZFP92 (ENSMLEG00000013319) #12	HAUS7 (ENSMLEG00000038483) #13	BGN (ENSMLEG00000029067) #14	ATP2B3 (ENSMLEG00000032665) #15	CCNQ (ENSMLEG00000039950) #16	DUSP9 (ENSMLEG00000042559) #17	ENSMLEG00000027362 #18	PNCK (ENSMLEG00000027716) #19	SLC6A8 (ENSMLEG00000042530) #20	BCAP31 (ENSMLEG00000042884) #21	ABCD1 (ENSMLEG00000041428) #22	PLXNB3 (ENSMLEG00000032454) #23	IDH3G (ENSMLEG00000038908) #25	SSR4 (ENSMLEG00000016802) #26	PDZD4 (ENSMLEG00000004595) #27	L1CAM (ENSMLEG00000036326) #28	AVPR2 (ENSMLEG00000042889) #29	ARHGAP4 (ENSMLEG00000038659) #30	NAA10 (ENSMLEG00000032424) #31	RENBP (ENSMLEG00000038487) #32	HCFC1 (ENSMLEG00000042451) #33	IRAK1 (ENSMLEG00000029062) #34	ENSMLEG00000009357 #35	ENSMLEG00000027410 #36	MECP2 (ENSMLEG00000032763) #37	ENSMLEG00000033448
Vervet Monkey	MODERN SPECIES	11	ENSCSAG00000018755	ENSCSAG00000018756	JAG1 (ENSCSAG00000013670)	SLX4IP (ENSCSAG00000013658)	MKKS (ENSCSAG00000013641)	SNAP25 (ENSCSAG00000013635)	ANKEF1 (ENSCSAG00000013628)	PAK5 (ENSCSAG00000013621)	LAMP5 (ENSCSAG00000013614)	PLCB4 (ENSCSAG00000013606)	PLCB1 (ENSCSAG00000013586)	ENSCSAG00000013566	TMX4 (ENSCSAG00000013556)	HAO1 (ENSCSAG00000013525)	BMP2 (ENSCSAG00000013514)	ENSCSAG00000013506 #22	FERMT1 (ENSCSAG00000013498)	LRRN4 (ENSCSAG00000013488)	CRLS1 (ENSCSAG00000013478)	MCM8 (ENSCSAG00000013471)	TRMT6 (ENSCSAG00000013461)	CHGB (ENSCSAG00000013449)	SHLD1 (ENSCSAG00000013442)	GPCPD1 (ENSCSAG00000013433)	PROKR2 (ENSCSAG00000013412)	CDS2 (ENSCSAG00000013406)	PCNA (ENSCSAG00000013400)	TMEM230 (ENSCSAG00000013392)	SLC23A2 (ENSCSAG00000013382)	RASSF2 (ENSCSAG00000013371)	PRND (ENSCSAG00000018757)
Rhinopithecus	ANCESTRAL SPECIES	195			ENSGT01030000234522.C.b.e.a.a.a.a.a.b.c #9	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000162887 #12	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.e #16	ENSGT00940000161880 #17	ENSGT00390000015797.c.a #18	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00910000147052 #36	ENSGT00530000063687.b.b.b #37
Black snub-nosed monkey	MODERN SPECIES	661			PNMA6F (ENSRBIG00000030196) #9	ENSRBIG00000041318	PNMA6E (ENSRBIG00000025010) #11	ZFP92 (ENSRBIG00000027712) #12	HAUS7 (ENSRBIG00000038209) #13	BGN (ENSRBIG00000043894) #14	ATP2B3 (ENSRBIG00000030237) #15	CCNQ (ENSRBIG00000034283) #16	DUSP9 (ENSRBIG00000031725) #17	ENSRBIG00000028856 #18	PNCK (ENSRBIG00000039714) #19	SLC6A8 (ENSRBIG00000040899) #20	BCAP31 (ENSRBIG00000043421) #21	ABCD1 (ENSRBIG00000044662) #22	PLXNB3 (ENSRBIG00000026773) #23	IDH3G (ENSRBIG00000035445) #25	SSR4 (ENSRBIG00000015579) #26	PDZD4 (ENSRBIG00000029436) #27	L1CAM (ENSRBIG00000036638) #28	ENSRBIG00000032383 #29	ENSRBIG00000034619 #29	ARHGAP4 (ENSRBIG00000031629) #30	NAA10 (ENSRBIG00000040703) #31	RENBP (ENSRBIG00000020101) #32	HCFC1 (ENSRBIG00000038921) #33	IRAK1 (ENSRBIG00000037074) #34	ENSRBIG00000019564 #35	ENSRBIG00000044898 #35	ENSRBIG00000036061 #36
Golden snub-nosed monkey	MODERN SPECIES	977				ENSRROG00000033043	ENSRROG00000028871 #11	ZFP92 (ENSRROG00000031212) #12	HAUS7 (ENSRROG00000005507) #13	BGN (ENSRROG00000042294) #14	ATP2B3 (ENSRROG00000043666) #15	CCNQ (ENSRROG00000038429) #16	DUSP9 (ENSRROG00000037162) #17	ENSRROG00000039351 #18	PNCK (ENSRROG00000044383) #19	SLC6A8 (ENSRROG00000045113) #20	BCAP31 (ENSRROG00000045725) #21	ABCD1 (ENSRROG00000037289) #22	PLXNB3 (ENSRROG00000039660) #23	SRPK3 (ENSRROG00000011319) #24	IDH3G (ENSRROG00000044366) #25	SSR4 (ENSRROG00000035638) #26	PDZD4 (ENSRROG00000042678) #27	L1CAM (ENSRROG00000041494) #28	AVPR2 (ENSRROG00000036522) #29	ARHGAP4 (ENSRROG00000045508) #30	NAA10 (ENSRROG00000041881) #31	RENBP (ENSRROG00000034139) #32	HCFC1 (ENSRROG00000004412) #33
Hominoidea	ANCESTRAL SPECIES	29	ENSGT00940000165830	ENSGT00390000001700.a.b.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.c #9	ENSGT00940000162921	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.e.a.b #16	ENSGT00940000161880 #17	ENSGT00390000015797.c.a #18	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00390000009405.b.c.a.b	ENSGT00940000157506 #28	ENSGT00940000167437	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34
Hominidae	ANCESTRAL SPECIES	8	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT00940000165830	ENSGT00940000162921	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.e.a.b #16	ENSGT00940000161880 #17	ENSGT00390000015797.c.a #18	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00390000009405.b.c.a.b	ENSGT00940000157506 #28	ENSGT00940000167437	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.c #9	ENSGT00940000162921	ENSGT00940000162725	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.e.a.b #16	ENSGT00940000161880 #17	ENSGT00390000015797.c.a #18	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00390000009405.b.c.a.b	ENSGT00940000157506 #28	ENSGT00940000167437.b	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.c #9	ENSGT00940000162921	ENSGT00940000153582.b.a.a.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.e.a.b #16	ENSGT00940000161880 #17	ENSGT00390000015797.c.a #18	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00390000009405.b.c.a.b	ENSGT00940000157506 #28	ENSGT00940000167437.b	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34
Pan	ANCESTRAL SPECIES	6	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT00940000165830	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.c #9	ENSGT00940000162921	ENSGT00940000162887 #12	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.e.a.b #16	ENSGT00940000161880 #17	ENSGT00390000015797.c.a #18	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00390000009405.b.c.a.b	ENSGT00940000157506 #28	ENSGT00940000167437.b	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34
Bonobo	MODERN SPECIES	369	ZNF185 (ENSPPAG00000039048)	PNMA5 (ENSPPAG00000009176) ##9	PNMA3 (ENSPPAG00000033493) ##9	ENSPPAG00000043033 #9	ENSPPAG00000016764	ZFP92 (ENSPPAG00000027875) #12	HAUS7 (ENSPPAG00000034336) #13	BGN (ENSPPAG00000033259) #14	ATP2B3 (ENSPPAG00000028306) #15	ENSPPAG00000027886 #16	DUSP9 (ENSPPAG00000043656) #17	ENSPPAG00000029417 #18	PNCK (ENSPPAG00000030824) #19	SLC6A8 (ENSPPAG00000035106) #20	BCAP31 (ENSPPAG00000033741) #21	ABCD1 (ENSPPAG00000038979) #22	PLXNB3 (ENSPPAG00000029812) #23	SRPK3 (ENSPPAG00000030197) #24	IDH3G (ENSPPAG00000041999) #25	SSR4 (ENSPPAG00000041018) #26	PDZD4 (ENSPPAG00000038351) #27	ENSPPAG00000001011	L1CAM (ENSPPAG00000042079) #28	AVPR2 (ENSPPAG00000034862) #29	ARHGAP4 (ENSPPAG00000039545) #30	ENSPPAG00000037021 #31	RENBP (ENSPPAG00000035978) #32	HCFC1 (ENSPPAG00000044057) #33	TMEM187 (ENSPPAG00000007444)	IRAK1 (ENSPPAG00000040186) #34	ENSPPAG00000042175 #36
Chimpanzee	MODERN SPECIES	972	ENSPTRG00000048952 ##9	ENSPTRG00000044850 ##9	MAGEA1 (ENSPTRG00000022386)	PNMA6F (ENSPTRG00000049868) #9	ZNF275 (ENSPTRG00000022394)	ZFP92 (ENSPTRG00000047228) #12	HAUS7 (ENSPTRG00000022397) #13	BGN (ENSPTRG00000022541) #14	ATP2B3 (ENSPTRG00000022399) #15	CCNQ (ENSPTRG00000043565) #16	ENSPTRG00000050474 #17	ENSPTRG00000043668 #18	PNCK (ENSPTRG00000022404) #19	ENSPTRG00000050829 #20	BCAP31 (ENSPTRG00000046838) #21	ABCD1 (ENSPTRG00000051738) #22	PLXNB3 (ENSPTRG00000052414) #23	SRPK3 (ENSPTRG00000022410) #24	IDH3G (ENSPTRG00000024398) #25	SSR4 (ENSPTRG00000022412) #26	PDZD4 (ENSPTRG00000022413) #27	ENSPTRG00000045057	L1CAM (ENSPTRG00000022416) #28	ENSPTRG00000039921	AVPR2 (ENSPTRG00000033849) #29	ARHGAP4 (ENSPTRG00000033931) #30	NAA10 (ENSPTRG00000022419) #31	RENBP (ENSPTRG00000022420) #32	HCFC1 (ENSPTRG00000022421) #33	ENSPTRG00000022422	IRAK1 (ENSPTRG00000022423) #34
Human	MODERN SPECIES	1827	MAGEA1 (ENSG00000198681)	PWWP4 (ENSG00000278803)	PNMA6F (ENSG00000225110) #9	ZNF275 (ENSG00000063587)	PNMA6E (ENSG00000214897) #11	ZFP92 (ENSG00000189420) #12	TREX2 (ENSG00000183479)	HAUS7 (ENSG00000213397) #13	BGN (ENSG00000182492) #14	ATP2B3 (ENSG00000067842) #15	CCNQ (ENSG00000262919) #16	DUSP9 (ENSG00000130829) #17	PNCK (ENSG00000130822) #19	SLC6A8 (ENSG00000130821) #20	BCAP31 (ENSG00000185825) #21	ABCD1 (ENSG00000101986) #22	PLXNB3 (ENSG00000198753) #23	SRPK3 (ENSG00000184343) #24	IDH3G (ENSG00000067829) #25	SSR4 (ENSG00000180879) #26	PDZD4 (ENSG00000067840) #27	L1CAM (ENSG00000198910) #28	AVPR2 (ENSG00000126895) #29	ARHGAP4 (ENSG00000089820) #30	NAA10 (ENSG00000102030) #31	RENBP (ENSG00000102032) #32	HCFC1 (ENSG00000172534) #33	TMEM187 (ENSG00000177854)	IRAK1 (ENSG00000184216) #34	MECP2 (ENSG00000169057) #37	OPN1LW (ENSG00000102076)
Gorilla	MODERN SPECIES	523	MAGEA1 (ENSGGOG00000010904)	PNMA6F (ENSGGOG00000039046) #9	ENSGGOG00000010898	ENSGGOG00000038628 #11	ZFP92 (ENSGGOG00000039989) #12	TREX2 (ENSGGOG00000036312)	HAUS7 (ENSGGOG00000007959) #13	BGN (ENSGGOG00000007211) #14	ATP2B3 (ENSGGOG00000007217) #15	ENSGGOG00000027073 #16	DUSP9 (ENSGGOG00000015273) #17	ENSGGOG00000039596 #18	PNCK (ENSGGOG00000005546) #19	ENSGGOG00000041742 ##20	ENSGGOG00000005559 #21	ABCD1 (ENSGGOG00000005561) #22	PLXNB3 (ENSGGOG00000027723) #23	SRPK3 (ENSGGOG00000036424) #24	IDH3G (ENSGGOG00000023796) #25	SSR4 (ENSGGOG00000024329) #26	PDZD4 (ENSGGOG00000007937) #27	AVPR2 (ENSGGOG00000027387) #29	ARHGAP4 (ENSGGOG00000009770) #30	NAA10 (ENSGGOG00000009788) #31	RENBP (ENSGGOG00000009791) #32	HCFC1 (ENSGGOG00000009800) #33	TMEM187 (ENSGGOG00000008146)	IRAK1 (ENSGGOG00000000220) #34	ENSGGOG00000040298 #35	ENSGGOG00000041822 #36	MECP2 (ENSGGOG00000042467) #37
Orangutan	MODERN SPECIES	242	PNMA6A (ENSPPYG00000020836) ##9	MAGEA1 (ENSPPYG00000020837)	PNMA6F (ENSPPYG00000020840) #9	ZNF275 (ENSPPYG00000020839)	ENSPPYG00000033472 #11	ENSPPYG00000020841 #12	HAUS7 (ENSPPYG00000020843) #13	BGN (ENSPPYG00000020844) #14	ATP2B3 (ENSPPYG00000020845) #15	CCNQ (ENSPPYG00000020846) #16	DUSP9 (ENSPPYG00000020847) #17	ENSPPYG00000031169 #18	ENSPPYG00000020848 #19	SLC6A8 (ENSPPYG00000037616) #20	BCAP31 (ENSPPYG00000020850) #21	ABCD1 (ENSPPYG00000020852) #22	SRPK3 (ENSPPYG00000020854) #24	IDH3G (ENSPPYG00000020855) #25	SSR4 (ENSPPYG00000020856) #26	PDZD4 (ENSPPYG00000020857) #27	ENSPPYG00000031511	L1CAM (ENSPPYG00000020858) #28	ENSPPYG00000020859 #29	ARHGAP4 (ENSPPYG00000020860) #30	NAA10 (ENSPPYG00000020861) #31	RENBP (ENSPPYG00000020862) #32	HCFC1 (ENSPPYG00000020863) #33	TMEM187 (ENSPPYG00000020864)	IRAK1 (ENSPPYG00000020865) #34	MECP2 (ENSPPYG00000020866) #37	ENSPPYG00000020867
Gibbon	MODERN SPECIES	449	ZNF185 (ENSNLEG00000013907)	PNMA3 (ENSNLEG00000018300) ##9	ENSNLEG00000014065 ##9	ENSNLEG00000031614	ENSNLEG00000027745 #11	ZFP92 (ENSNLEG00000013228) #12	ENSNLEG00000013237	ENSNLEG00000031253 #13	BGN (ENSNLEG00000013250) #14	ATP2B3 (ENSNLEG00000032741) #15	CCNQ (ENSNLEG00000013298) #16	DUSP9 (ENSNLEG00000013321) #17	ENSNLEG00000027939 #18	PNCK (ENSNLEG00000013336) #19	BCAP31 (ENSNLEG00000013380) #21	ABCD1 (ENSNLEG00000013458) #22	PLXNB3 (ENSNLEG00000013475) #23	ENSNLEG00000013518 #24	IDH3G (ENSNLEG00000013540) #25	SSR4 (ENSNLEG00000013602) #26	PDZD4 (ENSNLEG00000013626) #27	ENSNLEG00000034251	L1CAM (ENSNLEG00000013647) #28	ENSNLEG00000031864	AVPR2 (ENSNLEG00000013671) #29	ARHGAP4 (ENSNLEG00000013678) #30	NAA10 (ENSNLEG00000013724) #31	ENSNLEG00000013753 #32	HCFC1 (ENSNLEG00000026624) #33	TMEM187 (ENSNLEG00000013763)	ENSNLEG00000013767 #34
Platyrrhini	ANCESTRAL SPECIES	42	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT00390000001700.a.b.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.c #9	ENSGT00940000162921	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.c #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a.f #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00910000147052 #36	ENSGT00530000063687.b.b.b #37
Cebidae	ANCESTRAL SPECIES	27	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT00390000001700.a.b.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.c #9	ENSGT00940000162921	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.c #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a.f #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00910000147052 #36	ENSGT00530000063687.b.b.b #37
Cebidae_a	ANCESTRAL SPECIES	78			ENSGT00940000162725	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.c #9	ENSGT00940000162921	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.d #11	ENSGT00940000162887 #12	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445.c #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a.f #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00910000147052 #36	ENSGT00530000063687.b.b.b #37
Capuchin	MODERN SPECIES	597			ENSCCAG00000024093 #9	ENSCCAG00000020739	ENSCCAG00000030112 #9	ZFP92 (ENSCCAG00000034129) #12	HAUS7 (ENSCCAG00000030265) #13	BGN (ENSCCAG00000018493) #14	ATP2B3 (ENSCCAG00000027100) #15	CCNQ (ENSCCAG00000029897) #16	DUSP9 (ENSCCAG00000033198) #17	ENSCCAG00000023569 ##18	PNCK (ENSCCAG00000021403) #19	SLC6A8 (ENSCCAG00000035546) #20	BCAP31 (ENSCCAG00000033187) #21	ABCD1 (ENSCCAG00000019717) #22	PLXNB3 (ENSCCAG00000024352) #23	SRPK3 (ENSCCAG00000021599) #24	SSR4 (ENSCCAG00000020454) #26	PDZD4 (ENSCCAG00000022158) #27	L1CAM (ENSCCAG00000032233) #28	AVPR2 (ENSCCAG00000028592) #29	ARHGAP4 (ENSCCAG00000025262) #30	ENSCCAG00000033959 #31	RENBP (ENSCCAG00000037940) #32	HCFC1 (ENSCCAG00000021425) #33	IRAK1 (ENSCCAG00000023583) #34	ENSCCAG00000020001 #35	ENSCCAG00000028727 #36	MECP2 (ENSCCAG00000037407) #37	ENSCCAG00000036350
Bolivian squirrel monkey	MODERN SPECIES	236				PNMA6F (ENSSBOG00000015383) #9	ENSSBOG00000027546	ENSSBOG00000030661 #11	ZFP92 (ENSSBOG00000028775) #12	HAUS7 (ENSSBOG00000028472) #13	BGN (ENSSBOG00000029980) #14	ATP2B3 (ENSSBOG00000032052) #15	ENSSBOG00000029871 #16	DUSP9 (ENSSBOG00000001225) #17	PNCK (ENSSBOG00000031039) #19	ENSSBOG00000033535 #20	ENSSBOG00000028295 #21	ABCD1 (ENSSBOG00000024968) #22	PLXNB3 (ENSSBOG00000025081) #23	SRPK3 (ENSSBOG00000024085) #24	IDH3G (ENSSBOG00000019899) #25	SSR4 (ENSSBOG00000022316) #26	PDZD4 (ENSSBOG00000033217) #27	L1CAM (ENSSBOG00000033301) #28	AVPR2 (ENSSBOG00000031595) #29	ARHGAP4 (ENSSBOG00000023946) #30	ENSSBOG00000020071 #31	RENBP (ENSSBOG00000034728) #32	HCFC1 (ENSSBOG00000034222) #33	IRAK1 (ENSSBOG00000018599) #34	ENSSBOG00000017747 #35	MECP2 (ENSSBOG00000024999) #37	ENSSBOG00000025722
Marmoset	MODERN SPECIES	78	PNMA3 (ENSCJAG00000022542) ##9	PWWP4 (ENSCJAG00000052872)	PNMA6F (ENSCJAG00000042286) #9	ENSCJAG00000019468	PNMA6E (ENSCJAG00000048415) #11	ZFP92 (ENSCJAG00000011538) #12	TREX2 (ENSCJAG00000011515)	HAUS7 (ENSCJAG00000036194) #13	BGN (ENSCJAG00000011493) #14	ATP2B3 (ENSCJAG00000011413) #15	ENSCJAG00000011407 #16	DUSP9 (ENSCJAG00000047408) #17	ENSCJAG00000081213 #19	ENSCJAG00000011356 #20	BCAP31 (ENSCJAG00000011348) #21	ABCD1 (ENSCJAG00000011337) #22	PLXNB3 (ENSCJAG00000011267) #23	SRPK3 (ENSCJAG00000011233) #24	PDZD4 (ENSCJAG00000011185) #27	SSR4 (ENSCJAG00000011167) #26	ENSCJAG00000074256	ENSCJAG00000022809	L1CAM (ENSCJAG00000011023) #28	ARHGAP4 (ENSCJAG00000011008) #30	AVPR2 (ENSCJAG00000011022) #29	NAA10 (ENSCJAG00000014506) #31	RENBP (ENSCJAG00000014500) #32	IRAK1 (ENSCJAG00000014452) #34	MECP2 (ENSCJAG00000016796) #37	ENSCJAG00000014412	TEX28 (ENSCJAG00000042631)
Mas night monkey	MODERN SPECIES	1312				PNMA6F (ENSANAG00000025537) #9	ZNF275 (ENSANAG00000025581)	ENSANAG00000022983 #11	ZFP92 (ENSANAG00000038344) #12	HAUS7 (ENSANAG00000022685) #13	BGN (ENSANAG00000033529) #14	ATP2B3 (ENSANAG00000032972) #15	ENSANAG00000000457 #16	DUSP9 (ENSANAG00000019919) #17	PNCK (ENSANAG00000010774) #19	ENSANAG00000037607 #20	BCAP31 (ENSANAG00000035222) #21	ABCD1 (ENSANAG00000035583) #22	PLXNB3 (ENSANAG00000036384) #23	SRPK3 (ENSANAG00000037077) #24	ENSANAG00000024077 #25	SSR4 (ENSANAG00000035059) #26	PDZD4 (ENSANAG00000026191) #27	L1CAM (ENSANAG00000035752) #28	AVPR2 (ENSANAG00000022496) #29	ARHGAP4 (ENSANAG00000023680) #30	NAA10 (ENSANAG00000019745) #31	RENBP (ENSANAG00000034421) #32	HCFC1 (ENSANAG00000030898) #33	IRAK1 (ENSANAG00000030752) #34	ENSANAG00000019708 #35	MECP2 (ENSANAG00000019603) #37	ENSANAG00000034691
Tarsier	MODERN SPECIES	2197					ENSTSYG00000000195	ENSTSYG00000036390 #9	ENSTSYG00000031978 #12	HAUS7 (ENSTSYG00000030026) #13	BGN (ENSTSYG00000030156) #14	ATP2B3 (ENSTSYG00000034877) #15	FAM58A (ENSTSYG00000026900) #16	DUSP9 (ENSTSYG00000026755) #17	PNCK (ENSTSYG00000034891) #19	ENSTSYG00000033997 #20	BCAP31 (ENSTSYG00000003985) #21	ABCD1 (ENSTSYG00000028624) #22	PLXNB3 (ENSTSYG00000032080) #23
Strepsirrhini	ANCESTRAL SPECIES	45	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00390000001700.a.b.b	ENSGT00940000162725	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Lemuriformes	ANCESTRAL SPECIES	60	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00940000162725	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Lemuriformes_a	ANCESTRAL SPECIES	110				ENSGT00940000162725	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Greater bamboo lemur	MODERN SPECIES	265															BCAP31 (ENSPSMG00000023562) #21	ABCD1 (ENSPSMG00000023552) #22	ENSPSMG00000023542 #23	SRPK3 (ENSPSMG00000023528) #24	IDH3G (ENSPSMG00000023441) #25	SSR4 (ENSPSMG00000023367) #26	PDZD4 (ENSPSMG00000023341) #27	L1CAM (ENSPSMG00000023248) #28	ENSPSMG00000023102	AVPR2 (ENSPSMG00000023097) #29	ARHGAP4 (ENSPSMG00000023028) #30	NAA10 (ENSPSMG00000022912) #31	RENBP (ENSPSMG00000022840) #32	HCFC1 (ENSPSMG00000022815) #33	TMEM187 (ENSPSMG00000022767)	IRAK1 (ENSPSMG00000022745) #34	ENSPSMG00000022715
Coquerels sifaka	MODERN SPECIES	882				ENSPCOG00000020542	ENSPCOG00000025588 #9	ENSPCOG00000018479 ##10	TREX2 (ENSPCOG00000022646)	HAUS7 (ENSPCOG00000016936) #13	BGN (ENSPCOG00000018303) #14	ATP2B3 (ENSPCOG00000022001) #15	CCNQ (ENSPCOG00000020959) #16	DUSP9 (ENSPCOG00000021779) #17	PNCK (ENSPCOG00000019463) #19	ENSPCOG00000024763 #20	BCAP31 (ENSPCOG00000017960) #21	ABCD1 (ENSPCOG00000016908) #22	PLXNB3 (ENSPCOG00000024468) #23	SRPK3 (ENSPCOG00000018569) #24	IDH3G (ENSPCOG00000023374) #25	SSR4 (ENSPCOG00000028866) #26	PDZD4 (ENSPCOG00000025180) #27	L1CAM (ENSPCOG00000010437) #28	AVPR2 (ENSPCOG00000008409) #29	ARHGAP4 (ENSPCOG00000009927) #30	ENSPCOG00000027024 #31	RENBP (ENSPCOG00000013414) #32	HCFC1 (ENSPCOG00000028065) #33	TMEM187 (ENSPCOG00000024026)	IRAK1 (ENSPCOG00000027349) #34	MECP2 (ENSPCOG00000024848) #37	ENSPCOG00000015866
Mouse lemur	MODERN SPECIES	169	ENSMICG00000005862	NSDHL (ENSMICG00000005868)	ZNF185 (ENSMICG00000005873)	ENSMICG00000046490	ENSMICG00000046759 #9	ZFP92 (ENSMICG00000011893) #12	TREX2 (ENSMICG00000038278)	HAUS7 (ENSMICG00000000008) #13	BGN (ENSMICG00000000009) #14	ATP2B3 (ENSMICG00000000010) #15	CCNQ (ENSMICG00000032354) #16	DUSP9 (ENSMICG00000044469) #17	PNCK (ENSMICG00000013947) #19	ENSMICG00000003428 #20	BCAP31 (ENSMICG00000003437) #21	ABCD1 (ENSMICG00000003441) #22	PLXNB3 (ENSMICG00000003449) #23	SRPK3 (ENSMICG00000003464) #24	IDH3G (ENSMICG00000003472) #25	SSR4 (ENSMICG00000003476) #26	PDZD4 (ENSMICG00000027183) #27	L1CAM (ENSMICG00000003486) #28	AVPR2 (ENSMICG00000037091) #29	ARHGAP4 (ENSMICG00000016246) #30	NAA10 (ENSMICG00000010278) #31	RENBP (ENSMICG00000033869) #32	HCFC1 (ENSMICG00000016286) #33	TMEM187 (ENSMICG00000033392)	IRAK1 (ENSMICG00000005136) #34	MECP2 (ENSMICG00000005149) #37	ENSMICG00000011536
Bushbaby	MODERN SPECIES	364	ENSOGAG00000029555	ENSOGAG00000030548 #9	ENSOGAG00000032682	ENSOGAG00000031649 #10	ZFP92 (ENSOGAG00000029963) #12	TREX2 (ENSOGAG00000033175)	HAUS7 (ENSOGAG00000008917) #13	ENSOGAG00000029324	BGN (ENSOGAG00000008920) #14	ATP2B3 (ENSOGAG00000008921) #15	ENSOGAG00000033279 #16	DUSP9 (ENSOGAG00000002412) #17	PNCK (ENSOGAG00000006718) #19	ENSOGAG00000031270 #20	BCAP31 (ENSOGAG00000006721) #21	ABCD1 (ENSOGAG00000027153) #22	PLXNB3 (ENSOGAG00000003133) #23	SRPK3 (ENSOGAG00000003138) #24	ENSOGAG00000006735 #25	SSR4 (ENSOGAG00000006738) #26	PDZD4 (ENSOGAG00000006741) #27	L1CAM (ENSOGAG00000015077) #28	AVPR2 (ENSOGAG00000030887) #29	ARHGAP4 (ENSOGAG00000015087) #30	NAA10 (ENSOGAG00000013263) #31	RENBP (ENSOGAG00000032778) #32	HCFC1 (ENSOGAG00000015100) #33	TMEM187 (ENSOGAG00000026922)	IRAK1 (ENSOGAG00000015108) #34	MECP2 (ENSOGAG00000015115) #37	ENSOGAG00000000897
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37
Glires	ANCESTRAL SPECIES	10	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37
Rodentia	ANCESTRAL SPECIES	10	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162843
Sciuridae	ANCESTRAL SPECIES	27	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162843
Marmotini	ANCESTRAL SPECIES	83				ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162843
Marmotini_b	ANCESTRAL SPECIES	124				ENSGT00940000153582.b.a.a.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162843
Squirrel	MODERN SPECIES	409		ENSSTOG00000032558	ZNF275 (ENSSTOG00000022633)	ENSSTOG00000033034 #9	ENSSTOG00000029369	ZFP92 (ENSSTOG00000009126) #12	TREX2 (ENSSTOG00000027213)	HAUS7 (ENSSTOG00000022988) #13	BGN (ENSSTOG00000008058) #14	ATP2B3 (ENSSTOG00000008068) #15	CCNQ (ENSSTOG00000008103) #16	DUSP9 (ENSSTOG00000008115) #17	PNCK (ENSSTOG00000008119) #19	ENSSTOG00000026886 #20	BCAP31 (ENSSTOG00000008138) #21	ABCD1 (ENSSTOG00000008153) #22	ENSSTOG00000008188	PLXNB3 (ENSSTOG00000008197) #23	SRPK3 (ENSSTOG00000008233) #24	IDH3G (ENSSTOG00000008261) #25	SSR4 (ENSSTOG00000008278) #26	PDZD4 (ENSSTOG00000021423) #27	L1CAM (ENSSTOG00000008316) #28	AVPR2 (ENSSTOG00000008352) #29	ARHGAP4 (ENSSTOG00000022503) #30	NAA10 (ENSSTOG00000010237) #31	RENBP (ENSSTOG00000010247) #32	HCFC1 (ENSSTOG00000029220) #33	IRAK1 (ENSSTOG00000007991) #34	MECP2 (ENSSTOG00000006094) #37	ENSSTOG00000024701
Arctic ground squirrel	MODERN SPECIES	562					ZNF275 (ENSUPAG00010012750)	ENSUPAG00010012742 #9	ZFP92 (ENSUPAG00010012725) #12	TREX2 (ENSUPAG00010012721)	HAUS7 (ENSUPAG00010012697) #13	BGN (ENSUPAG00010012684) #14	ATP2B3 (ENSUPAG00010012590) #15	CCNQ (ENSUPAG00010012574) #16	DUSP9 (ENSUPAG00010012557) #17	PNCK (ENSUPAG00010012527) #19	ENSUPAG00010012523 #20	ABCD1 (ENSUPAG00010012506) #22	ENSUPAG00010012496	ENSUPAG00010012465 #23	SRPK3 (ENSUPAG00010012441) #24	IDH3G (ENSUPAG00010012400) #25	SSR4 (ENSUPAG00010012375) #26	PDZD4 (ENSUPAG00010012358) #27	L1CAM (ENSUPAG00010012204) #28	AVPR2 (ENSUPAG00010012191) #29	ARHGAP4 (ENSUPAG00010012018) #30	NAA10 (ENSUPAG00010011976) #31	RENBP (ENSUPAG00010011941) #32	HCFC1 (ENSUPAG00010011877) #33	IRAK1 (ENSUPAG00010010971) #34	MECP2 (ENSUPAG00010010936) #37	ENSUPAG00010010918
Alpin marmot	MODERN SPECIES	136					ENSMMMG00000007637	ENSMMMG00000007802 #10	ENSMMMG00000007824 #9	ENSMMMG00000007851	TREX2 (ENSMMMG00000007872)	HAUS7 (ENSMMMG00000007880) #13	BGN (ENSMMMG00000007908) #14	ATP2B3 (ENSMMMG00000007918) #15	CCNQ (ENSMMMG00000008029) #16	ENSMMMG00000008033 #20	BCAP31 (ENSMMMG00000008080) #21	ABCD1 (ENSMMMG00000008089) #22	PLXNB3 (ENSMMMG00000008113) #23	IDH3G (ENSMMMG00000008193) #25	SSR4 (ENSMMMG00000008221) #26	PDZD4 (ENSMMMG00000008247) #27	L1CAM (ENSMMMG00000008292) #28	AVPR2 (ENSMMMG00000008488) #29	ARHGAP4 (ENSMMMG00000008497) #30	ENSMMMG00000009143 #31	RENBP (ENSMMMG00000009149) #32	HCFC1 (ENSMMMG00000009171) #33	IRAK1 (ENSMMMG00000009239) #34	MECP2 (ENSMMMG00000009970) #37	ENSMMMG00000010010	TEX28 (ENSMMMG00000010023)	TKTL1 (ENSMMMG00000010036)
Eurasian red squirrel	MODERN SPECIES	156	PNMA3 (ENSSVLG00005021940) ##9	ENSSVLG00005021915 ##9	ENSSVLG00005021891 ##9	ENSSVLG00005021871	ENSSVLG00005021782 #10	ENSSVLG00005021735 #9	ZFP92 (ENSSVLG00005021718) #12	HAUS7 (ENSSVLG00005021619) #13	BGN (ENSSVLG00005021572) #14	ATP2B3 (ENSSVLG00005020846) #15	CCNQ (ENSSVLG00005020662) #16	DUSP9 (ENSSVLG00005020621) #17	PNCK (ENSSVLG00005020384) #19	ENSSVLG00005020284 #20	BCAP31 (ENSSVLG00005020208) #21	ABCD1 (ENSSVLG00005020163) #22	ENSSVLG00005020066 #23	SRPK3 (ENSSVLG00005020004) #24	IDH3G (ENSSVLG00005019902) #25	SSR4 (ENSSVLG00005019816) #26	PDZD4 (ENSSVLG00005019686) #27	AVPR2 (ENSSVLG00005019578) #29	ENSSVLG00005019536	ARHGAP4 (ENSSVLG00005019458) #30	NAA10 (ENSSVLG00005019123) #31	RENBP (ENSSVLG00005019023) #32	HCFC1 (ENSSVLG00005018524) #33	ENSSVLG00005018093 #34	MECP2 (ENSSVLG00005017899) #37	ENSSVLG00005017793	ENSSVLG00005017738
Hystricomorpha	ANCESTRAL SPECIES	54	ENSGT00940000155935.eb.a	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162843
Hystricomorpha_a	ANCESTRAL SPECIES	61	ENSGT00940000155935.eb.a	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162843
Hystricomorpha_b	ANCESTRAL SPECIES	84	ENSGT00940000162167	ENSGT00940000155935.eb.a	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162426
Long-tailed chinchilla	MODERN SPECIES	287					ENSCLAG00000002477	ZFP92 (ENSCLAG00000002658) #12	TREX2 (ENSCLAG00000002698)	HAUS7 (ENSCLAG00000002789) #13	BGN (ENSCLAG00000003040) #14	ATP2B3 (ENSCLAG00000006386) #15	CCNQ (ENSCLAG00000008202) #16	DUSP9 (ENSCLAG00000008316) #17	PNCK (ENSCLAG00000002167) #19	ENSCLAG00000002550 #20	BCAP31 (ENSCLAG00000002843) #21	ABCD1 (ENSCLAG00000001650) #22	PLXNB3 (ENSCLAG00000001828) #23	SRPK3 (ENSCLAG00000001932) #24	IDH3G (ENSCLAG00000002456) #25	SSR4 (ENSCLAG00000002670) #26	PDZD4 (ENSCLAG00000002707) #27	L1CAM (ENSCLAG00000001453) #28	AVPR2 (ENSCLAG00000002650) #29	ENSCLAG00000001334 #30	NAA10 (ENSCLAG00000001427) #31	RENBP (ENSCLAG00000003810) #32	HCFC1 (ENSCLAG00000004175) #33	IRAK1 (ENSCLAG00000006192) #34	MECP2 (ENSCLAG00000001648) #37	ENSCLAG00000001715	TKTL1 (ENSCLAG00000001825)
Degu	MODERN SPECIES	259	ENSODEG00000003691	GABRQ (ENSODEG00000003646)	ENSODEG00000003612	NSDHL (ENSODEG00000003563)	ENSODEG00000003535	ZFP92 (ENSODEG00000003508) #12	TREX2 (ENSODEG00000019142)	HAUS7 (ENSODEG00000003475) #13	BGN (ENSODEG00000003451) #14	ATP2B3 (ENSODEG00000003358) #15	CCNQ (ENSODEG00000003285) #16	DUSP9 (ENSODEG00000003261) #17	PNCK (ENSODEG00000003252) #19	ENSODEG00000003207 #20	BCAP31 (ENSODEG00000003174) #21	ABCD1 (ENSODEG00000003127) #22	PLXNB3 (ENSODEG00000002965) #23	SRPK3 (ENSODEG00000002869) #24	IDH3G (ENSODEG00000002774) #25	SSR4 (ENSODEG00000002732) #26	PDZD4 (ENSODEG00000005482) #27	L1CAM (ENSODEG00000005259) #28	ENSODEG00000005204	AVPR2 (ENSODEG00000005166) #29	ARHGAP4 (ENSODEG00000005124) #30	ENSODEG00000005100 #31	RENBP (ENSODEG00000005065) #32	HCFC1 (ENSODEG00000004823) #33	IRAK1 (ENSODEG00000004583) #34	MECP2 (ENSODEG00000004523) #37	ENSODEG00000004516 ##18
Guinea pig	MODERN SPECIES	148				ENSCPOG00000037160	ENSCPOG00000011291	ENSCPOG00000020829 #9	ZFP92 (ENSCPOG00000006654) #12	TREX2 (ENSCPOG00000025702)	HAUS7 (ENSCPOG00000007497) #13	BGN (ENSCPOG00000023628) #14	ATP2B3 (ENSCPOG00000005102) #15	CCNQ (ENSCPOG00000009250) #16	DUSP9 (ENSCPOG00000000114) #17	ENSCPOG00000011710 #20	BCAP31 (ENSCPOG00000008510) #21	ABCD1 (ENSCPOG00000011702) #22	PLXNB3 (ENSCPOG00000006868) #23	SRPK3 (ENSCPOG00000006881) #24	IDH3G (ENSCPOG00000006890) #25	SSR4 (ENSCPOG00000006898) #26	PDZD4 (ENSCPOG00000019482) #27	L1CAM (ENSCPOG00000005519) #28	AVPR2 (ENSCPOG00000012697) #29	ENSCPOG00000026143 #30	NAA10 (ENSCPOG00000011495) #31	ENSCPOG00000024784 #32	IRAK1 (ENSCPOG00000039151) #34	MECP2 (ENSCPOG00000012579) #37	ENSCPOG00000011198	ENSCPOG00000021789	TKTL1 (ENSCPOG00000011767)
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000000219	ENSHGLG00000035866	ENSHGLG00000032270	ENSHGLG00000046068	ENSHGLG00000045727 #9	ENSHGLG00000035589 #12	TREX2 (ENSHGLG00000008010)	HAUS7 (ENSHGLG00000002908) #13	BGN (ENSHGLG00000004010) #14	ATP2B3 (ENSHGLG00000000642) #15	CCNQ (ENSHGLG00000003517) #16	DUSP9 (ENSHGLG00000004236) #17	PNCK (ENSHGLG00000006098) #19	ENSHGLG00000037294 #20	BCAP31 (ENSHGLG00000000710) #21	ABCD1 (ENSHGLG00000001000) #22	PLXNB3 (ENSHGLG00000002203) #23	IDH3G (ENSHGLG00000000443) #25	SSR4 (ENSHGLG00000001720) #26	PDZD4 (ENSHGLG00000001939) #27	L1CAM (ENSHGLG00000003403) #28	AVPR2 (ENSHGLG00000006784) #29	ARHGAP4 (ENSHGLG00000000857) #30	NAA10 (ENSHGLG00000002773) #31	RENBP (ENSHGLG00000009835) #32	HCFC1 (ENSHGLG00000001143) #33	IRAK1 (ENSHGLG00000002116) #34	MECP2 (ENSHGLG00000000899) #37	ENSHGLG00000043472	TKTL1 (ENSHGLG00000042978)	RPL10 (ENSHGLG00000002349)
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Kangaroo rat	MODERN SPECIES	526					ENSDORG00000029018 #9	Zfp92 (ENSDORG00000001936) #12	Trex2 (ENSDORG00000023727)	Haus7 (ENSDORG00000001235) #13	ENSDORG00000001237 #14	Atp2b3 (ENSDORG00000013038) #15	ENSDORG00000012846 #16	Dusp9 (ENSDORG00000024222) #17	Pnck (ENSDORG00000014186) #19	Slc6a8 (ENSDORG00000001174) #20	Bcap31 (ENSDORG00000006022) #21	Abcd1 (ENSDORG00000006023) #22	Plxnb3 (ENSDORG00000006024) #23	Srpk3 (ENSDORG00000006026) #24	Idh3g (ENSDORG00000006029) #25	Ssr4 (ENSDORG00000006030) #26	Pdzd4 (ENSDORG00000028112) #27	L1cam (ENSDORG00000014093) #28	Avpr2 (ENSDORG00000002747) #29	Arhgap4 (ENSDORG00000002750) #30	Naa10 (ENSDORG00000002753) #31	Renbp (ENSDORG00000002755) #32	Hcfc1 (ENSDORG00000002756) #33	Irak1 (ENSDORG00000013876) #34	Mecp2 (ENSDORG00000014978) #37	Opn1mw (ENSDORG00000026454)	Tex28 (ENSDORG00000010136)
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Muroidea	ANCESTRAL SPECIES	13	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000159444	ENSGT00940000162167	ENSGT00940000155935	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Cricetinae	ANCESTRAL SPECIES	46		ENSGT00390000000062.x.b.k.b	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162843	ENSGT00940000153588.b
Chinese hamster chok1gshd	MODERN SPECIES	16	ENSCGRG00001023020	F8a (ENSCGRG00001010823)	ENSCGRG00001011071	Gm45015 (ENSCGRG00001000704) #9	ENSCGRG00001020684	Gm18336 (ENSCGRG00001009753) #9	Zfp92 (ENSCGRG00001024615) #12	Trex2 (ENSCGRG00001012110)	Haus7 (ENSCGRG00001014259) #13	Bgn (ENSCGRG00001004273) #14	Atp2b3 (ENSCGRG00001013946) #15	Dusp9 (ENSCGRG00001015656) #17	Pnck (ENSCGRG00001015654) #19	Slc6a8 (ENSCGRG00001013941) #20	ENSCGRG00001022627 #21	Abcd1 (ENSCGRG00001017773) #22	Plxnb3 (ENSCGRG00001024658) #23	Srpk3 (ENSCGRG00001005920) #24	Idh3g (ENSCGRG00001012756) #25	Ssr4 (ENSCGRG00001019369) #26	Pdzd4 (ENSCGRG00001012732) #27	L1cam (ENSCGRG00001020541) #28	Avpr2 (ENSCGRG00001010799) #29	Arhgap4 (ENSCGRG00001023232) #30	Naa10 (ENSCGRG00001012595) #31	Hcfc1 (ENSCGRG00001019535) #33	Irak1 (ENSCGRG00001013928) #34	ENSCGRG00001022957	Mecp2 (ENSCGRG00001017650) #37	Opn1mw (ENSCGRG00001024157)	Tex28 (ENSCGRG00001014288)
Golden Hamster	MODERN SPECIES	857					ENSMAUG00000019268	Gm18336 (ENSMAUG00000017654) #9	Zfp92 (ENSMAUG00000006204) #12	Trex2 (ENSMAUG00000006617)	Haus7 (ENSMAUG00000020073) #13	Bgn (ENSMAUG00000020050) #14	Atp2b3 (ENSMAUG00000009992) #15	Dusp9 (ENSMAUG00000020993) #17	Pnck (ENSMAUG00000017486) #19	Slc6a8 (ENSMAUG00000017007) #20	Bcap31 (ENSMAUG00000009135) #21	Abcd1 (ENSMAUG00000020103) #22	Plxnb3 (ENSMAUG00000005458) #23	Srpk3 (ENSMAUG00000009935) #24	Idh3g (ENSMAUG00000000657) #25	ENSMAUG00000015090 #26	Pdzd4 (ENSMAUG00000000466) #27	L1cam (ENSMAUG00000008575) #28	Avpr2 (ENSMAUG00000001098) #29	Arhgap4 (ENSMAUG00000020011) #30	Naa10 (ENSMAUG00000019021) #31	Hcfc1 (ENSMAUG00000018495) #33	Irak1 (ENSMAUG00000002430) #34	Mecp2 (ENSMAUG00000018195) #37	Opn1mw (ENSMAUG00000017549)	Tex28 (ENSMAUG00000011775)	Emd (ENSMAUG00000016655)
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00940000155935	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v.i #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Northern American deer mouse	MODERN SPECIES	475	Zfp185 (ENSPEMG00000001172)	Pnma5 (ENSPEMG00000029060) ##9	ENSPEMG00000029415 ##9	ENSPEMG00000014112 #9	Zfp275 (ENSPEMG00000028598) #10	ENSPEMG00000002119 #9	Zfp92 (ENSPEMG00000029357) #12	Trex2 (ENSPEMG00000004918)	Haus7 (ENSPEMG00000011467) #13	Bgn (ENSPEMG00000017164) #14	Atp2b3 (ENSPEMG00000001607) #15	Dusp9 (ENSPEMG00000009249) #17	Pnck (ENSPEMG00000018929) #19	ENSPEMG00000001387 #20	Bcap31 (ENSPEMG00000018100) #21	Abcd1 (ENSPEMG00000010748) #22	Plxnb3 (ENSPEMG00000019022) #23	Srpk3 (ENSPEMG00000012149) #24	Idh3g (ENSPEMG00000011232) #25	Ssr4 (ENSPEMG00000008760) #26	Pdzd4 (ENSPEMG00000008494) #27	L1cam (ENSPEMG00000011592) #28	Avpr2 (ENSPEMG00000008325) #29	Arhgap4 (ENSPEMG00000019112) #30	ENSPEMG00000010870 #32	Hcfc1 (ENSPEMG00000011837) #33	Irak1 (ENSPEMG00000001469) #34	ENSPEMG00000025112 #35	Mecp2 (ENSPEMG00000015115) #37	Opn1mw (ENSPEMG00000010994)	Tex28 (ENSPEMG00000009005)
Prairie vole	MODERN SPECIES	212					ENSMOCG00000008885	Gm18336 (ENSMOCG00000000683) #9	Zfp92 (ENSMOCG00000015417) #12	Trex2 (ENSMOCG00000001305)	ENSMOCG00000016829 #13	Bgn (ENSMOCG00000005439) #14	Atp2b3 (ENSMOCG00000016837) #15	Dusp9 (ENSMOCG00000014149) #17	Pnck (ENSMOCG00000005305) #19	Slc6a8 (ENSMOCG00000013922) #20	Bcap31 (ENSMOCG00000011355) #21	Abcd1 (ENSMOCG00000020381) #22	Plxnb3 (ENSMOCG00000016754) #23	Srpk3 (ENSMOCG00000000270) #24	Idh3g (ENSMOCG00000013265) #25	Ssr4 (ENSMOCG00000000481) #26	Pdzd4 (ENSMOCG00000013342) #27	L1cam (ENSMOCG00000018901) #28	Avpr2 (ENSMOCG00000012257) #29	Arhgap4 (ENSMOCG00000010795) #30	Naa10 (ENSMOCG00000011968) #31	Renbp (ENSMOCG00000021137) #32	Hcfc1 (ENSMOCG00000018390) #33
Murinae	ANCESTRAL SPECIES	14	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00390000000062.x.b.k.a	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162843
Mus	ANCESTRAL SPECIES	9	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00390000000062.x.b.k.a	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162843
Mus_A	ANCESTRAL SPECIES	15	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00390000000062.x.b.k.a	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162843
Mus_B	ANCESTRAL SPECIES	14	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00390000000062.x.b.k.a	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162843
Mouse	MODERN SPECIES	37	Xlr4c (ENSMUSG00000031362)	Xlr3c (ENSMUSG00000058147)	Xlr5c (ENSMUSG00000067764)	Gm45015 (ENSMUSG00000109368) #9	Zfp275 (ENSMUSG00000031365) #10	Gm18336 (ENSMUSG00000096966) #9	Zfp92 (ENSMUSG00000031374) #12	Trex2 (ENSMUSG00000031372)	Haus7 (ENSMUSG00000031371) #13	Bgn (ENSMUSG00000031375) #14	Atp2b3 (ENSMUSG00000031376) #15	Dusp9 (ENSMUSG00000031383) #17	Pnck (ENSMUSG00000002012) #19	Slc6a8 (ENSMUSG00000019558) #20	Bcap31 (ENSMUSG00000002015) #21	Abcd1 (ENSMUSG00000031378) #22	Plxnb3 (ENSMUSG00000031385) #23	Srpk3 (ENSMUSG00000002007) #24	Idh3g (ENSMUSG00000002010) #25	Ssr4 (ENSMUSG00000002014) #26	Pdzd4 (ENSMUSG00000002006) #27	L1cam (ENSMUSG00000031391) #28	Arhgap4 (ENSMUSG00000031389) #30	Avpr2 (ENSMUSG00000031390) #29	Naa10 (ENSMUSG00000031388) #31	Renbp (ENSMUSG00000031387) #32	Hcfc1 (ENSMUSG00000031386) #33	Irak1 (ENSMUSG00000031392) #34	Mecp2 (ENSMUSG00000031393) #37	Opn1mw (ENSMUSG00000031394)	Tex28 (ENSMUSG00000062564)
Mus_C	ANCESTRAL SPECIES	27	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162843
spretus	MODERN SPECIES	19	Nsdhl (MGP_SPRETEiJ_G0034297)	Zfp185 (MGP_SPRETEiJ_G0034298)	Pnma5 (MGP_SPRETEiJ_G0034299) ##9	Pnma3 (MGP_SPRETEiJ_G0034300) ##9	F8a (MGP_SPRETEiJ_G0034301)	Zfp275 (MGP_SPRETEiJ_G0034302) #10	Zfp92 (MGP_SPRETEiJ_G0034303) #12	Trex2 (MGP_SPRETEiJ_G0034304)	Haus7 (MGP_SPRETEiJ_G0034305) #13	Bgn (MGP_SPRETEiJ_G0034306) #14	Atp2b3 (MGP_SPRETEiJ_G0034307) #15	Dusp9 (MGP_SPRETEiJ_G0034308) #17	Pnck (MGP_SPRETEiJ_G0034309) #19	Slc6a8 (MGP_SPRETEiJ_G0034310) #20	Bcap31 (MGP_SPRETEiJ_G0034311) #21	Abcd1 (MGP_SPRETEiJ_G0034312) #22	Plxnb3 (MGP_SPRETEiJ_G0034313) #23	Srpk3 (MGP_SPRETEiJ_G0034314) #24	Idh3g (MGP_SPRETEiJ_G0034315) #25	Ssr4 (MGP_SPRETEiJ_G0034316) #26	Pdzd4 (MGP_SPRETEiJ_G0034317) #27	L1cam (MGP_SPRETEiJ_G0034318) #28	Arhgap4 (MGP_SPRETEiJ_G0034319) #30	Avpr2 (MGP_SPRETEiJ_G0034320) #29	Naa10 (MGP_SPRETEiJ_G0034321) #31	Renbp (MGP_SPRETEiJ_G0034322) #32	Hcfc1 (MGP_SPRETEiJ_G0034323) #33	Irak1 (MGP_SPRETEiJ_G0034324) #34	Mecp2 (MGP_SPRETEiJ_G0034325) #37	Opn1mw (MGP_SPRETEiJ_G0034326)	Tex28 (MGP_SPRETEiJ_G0034327)
Steppe mouse	MODERN SPECIES	1674																ENSMSIG00000015954 #22	Srpk3 (ENSMSIG00000015113) #24	Idh3g (ENSMSIG00000015022) #25
Ryukyu mouse	MODERN SPECIES	19	Gabrq (MGP_CAROLIEiJ_G0033142)	Cetn2 (MGP_CAROLIEiJ_G0033143)	Nsdhl (MGP_CAROLIEiJ_G0033144)	Zfp185 (MGP_CAROLIEiJ_G0033145)	Pnma5 (MGP_CAROLIEiJ_G0033146) ##9	Zfp275 (MGP_CAROLIEiJ_G0033147) #10	Zfp92 (MGP_CAROLIEiJ_G0033148) #12	Trex2 (MGP_CAROLIEiJ_G0033149)	Haus7 (MGP_CAROLIEiJ_G0033150) #13	Bgn (MGP_CAROLIEiJ_G0033151) #14	Atp2b3 (MGP_CAROLIEiJ_G0033152) #15	Dusp9 (MGP_CAROLIEiJ_G0033153) #17	Pnck (MGP_CAROLIEiJ_G0033154) #19	Slc6a8 (MGP_CAROLIEiJ_G0033155) #20	Bcap31 (MGP_CAROLIEiJ_G0033156) #21	Abcd1 (MGP_CAROLIEiJ_G0033157) #22	Plxnb3 (MGP_CAROLIEiJ_G0033158) #23	Srpk3 (MGP_CAROLIEiJ_G0033159) #24	Idh3g (MGP_CAROLIEiJ_G0033160) #25	Ssr4 (MGP_CAROLIEiJ_G0033161) #26	Pdzd4 (MGP_CAROLIEiJ_G0033162) #27	L1cam (MGP_CAROLIEiJ_G0033163) #28	Arhgap4 (MGP_CAROLIEiJ_G0033164) #30	Avpr2 (MGP_CAROLIEiJ_G0033165) #29	Naa10 (MGP_CAROLIEiJ_G0033166) #31	Renbp (MGP_CAROLIEiJ_G0033167) #32	Hcfc1 (MGP_CAROLIEiJ_G0033168) #33	Irak1 (MGP_CAROLIEiJ_G0033169) #34	Mecp2 (MGP_CAROLIEiJ_G0033170) #37	Opn1mw (MGP_CAROLIEiJ_G0033171)	Tex28 (MGP_CAROLIEiJ_G0033172)
Shrew mouse	MODERN SPECIES	23	Nsdhl (MGP_PahariEiJ_G0031685)	Zfp185 (MGP_PahariEiJ_G0031686)	MGP_PahariEiJ_G0031687	MGP_PahariEiJ_G0031688	MGP_PahariEiJ_G0031689	Zfp275 (MGP_PahariEiJ_G0031690) #10	MGP_PahariEiJ_G0031691 #12	Trex2 (MGP_PahariEiJ_G0031692)	Haus7 (MGP_PahariEiJ_G0031693) #13	Bgn (MGP_PahariEiJ_G0031694) #14	Atp2b3 (MGP_PahariEiJ_G0031695) #15	Dusp9 (MGP_PahariEiJ_G0031696) #17	Pnck (MGP_PahariEiJ_G0031697) #19	Slc6a8 (MGP_PahariEiJ_G0031698) #20	Bcap31 (MGP_PahariEiJ_G0031699) #21	Abcd1 (MGP_PahariEiJ_G0031700) #22	Plxnb3 (MGP_PahariEiJ_G0031701) #23	Srpk3 (MGP_PahariEiJ_G0031702) #24	Idh3g (MGP_PahariEiJ_G0031703) #25	Ssr4 (MGP_PahariEiJ_G0031704) #26	Pdzd4 (MGP_PahariEiJ_G0031705) #27	L1cam (MGP_PahariEiJ_G0031706) #28	Arhgap4 (MGP_PahariEiJ_G0031707) #30	Avpr2 (MGP_PahariEiJ_G0031708) #29	Naa10 (MGP_PahariEiJ_G0031709) #31	Renbp (MGP_PahariEiJ_G0031710) #32	Hcfc1 (MGP_PahariEiJ_G0031711) #33	Irak1 (MGP_PahariEiJ_G0031712) #34	Mecp2 (MGP_PahariEiJ_G0031713) #37	Opn1mw (MGP_PahariEiJ_G0031714)	Tex28 (MGP_PahariEiJ_G0031715)
Rat	MODERN SPECIES	46	LOC100911002 (ENSRNOG00000050177)	Pwwp4 (ENSRNOG00000068777)	ENSRNOG00000069789	Zfp275 (ENSRNOG00000061073) #10	RGD1559982 (ENSRNOG00000070467) #9	Zfp92 (ENSRNOG00000051836) #12	Trex2 (ENSRNOG00000056983)	Haus7 (ENSRNOG00000055648) #13	Bgn (ENSRNOG00000055962) #14	Atp2b3 (ENSRNOG00000061304) #15	AABR07071935.1 (ENSRNOG00000061441)	Dusp9 (ENSRNOG00000055185) #17	Pnck (ENSRNOG00000058317) #19	Slc6a8 (ENSRNOG00000057620) #20	Bcap31 (ENSRNOG00000055756) #21	Abcd1 (ENSRNOG00000056524) #22	Plxnb3 (ENSRNOG00000061731) #23	Srpk3 (ENSRNOG00000054548) #24	Idh3g (ENSRNOG00000055572) #25	Ssr4 (ENSRNOG00000053172) #26	Pdzd4 (ENSRNOG00000056174) #27	L1cam (ENSRNOG00000061230) #28	Arhgap4 (ENSRNOG00000058545) #30	Avpr2 (ENSRNOG00000059862) #29	Naa10 (ENSRNOG00000060063) #31	Renbp (ENSRNOG00000054765) #32	Hcfc1 (ENSRNOG00000051948) #33	Irak1 (ENSRNOG00000060869) #34	Mecp2 (ENSRNOG00000056659) #37	Opn1mw (ENSRNOG00000051529)	Tex28 (ENSRNOG00000051438)
Upper Galilee mountains blind mole rat	MODERN SPECIES	660	Nsdhl (ENSNGAG00000013199)	Zfp185 (ENSNGAG00000007010)	Pnma3 (ENSNGAG00000021577) ##9	Zfp275 (ENSNGAG00000023803) #10	Gm18336 (ENSNGAG00000010715) #9	Zfp92 (ENSNGAG00000014044) #12	Trex2 (ENSNGAG00000022556)	Haus7 (ENSNGAG00000004509) #13	Bgn (ENSNGAG00000020236) #14	Atp2b3 (ENSNGAG00000023103) #15	ENSNGAG00000022572 #16	Dusp9 (ENSNGAG00000022463) #17	Pnck (ENSNGAG00000024203) #19	Slc6a8 (ENSNGAG00000012992) #20	Bcap31 (ENSNGAG00000005195) #21	Abcd1 (ENSNGAG00000023420) #22	Plxnb3 (ENSNGAG00000023368) #23	Srpk3 (ENSNGAG00000021121) #24	Idh3g (ENSNGAG00000017889) #25	ENSNGAG00000015787 #26	Pdzd4 (ENSNGAG00000009443) #27	L1cam (ENSNGAG00000013550) #28	Avpr2 (ENSNGAG00000009849) #29	Arhgap4 (ENSNGAG00000015413) #30	Naa10 (ENSNGAG00000020303) #31	Renbp (ENSNGAG00000021686) #32	Hcfc1 (ENSNGAG00000013083) #33	Irak1 (ENSNGAG00000011647) #34	Mecp2 (ENSNGAG00000009171) #37	Opn1mw (ENSNGAG00000011604)	Tex28 (ENSNGAG00000023701)
Lesser Egyptian jerboa	MODERN SPECIES	224			Pnma5 (ENSJJAG00000022106) ##9	ENSJJAG00000023268 #9	Zfp275 (ENSJJAG00000023544) #10	ENSJJAG00000023776 #9	Zfp92 (ENSJJAG00000024019) #12	Trex2 (ENSJJAG00000012484)	Haus7 (ENSJJAG00000011304) #13	Bgn (ENSJJAG00000014050) #14	Atp2b3 (ENSJJAG00000014975) #15	Dusp9 (ENSJJAG00000018570) #17	Pnck (ENSJJAG00000020546) #19	Slc6a8 (ENSJJAG00000022046) #20	Bcap31 (ENSJJAG00000011510) #21	Abcd1 (ENSJJAG00000012430) #22	Plxnb3 (ENSJJAG00000017006) #23	Srpk3 (ENSJJAG00000019785) #24	Idh3g (ENSJJAG00000015962) #25	Ssr4 (ENSJJAG00000017842) #26	Pdzd4 (ENSJJAG00000018534) #27	L1cam (ENSJJAG00000021077) #28	Avpr2 (ENSJJAG00000018314) #29	Arhgap4 (ENSJJAG00000021798) #30	Naa10 (ENSJJAG00000023398) #31	Renbp (ENSJJAG00000010739) #32	Hcfc1 (ENSJJAG00000012815) #33	Irak1 (ENSJJAG00000013849) #34	Mecp2 (ENSJJAG00000022463) #37	ENSJJAG00000022596	Opn1mw (ENSJJAG00000022699)
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.a #22
Rabbit	MODERN SPECIES	549							TREX2 (ENSOCUG00000025054)	ENSOCUG00000002376 #13	BGN (ENSOCUG00000023931) #14	ATP2B3 (ENSOCUG00000029623) #15	CCNQ (ENSOCUG00000002393) #16	DUSP9 (ENSOCUG00000021158) #17	PNCK (ENSOCUG00000002399) #19	BCAP31 (ENSOCUG00000017921) #21	PLXNB3 (ENSOCUG00000016506) #23	ABCD1 (ENSOCUG00000017922) #22	IDH3G (ENSOCUG00000016554) #25	SSR4 (ENSOCUG00000027360) #26	ENSOCUG00000026260 #20	PDZD4 (ENSOCUG00000017200) #27	L1CAM (ENSOCUG00000001102) #28	AVPR2 (ENSOCUG00000015695) #29	ARHGAP4 (ENSOCUG00000001107) #30	NAA10 (ENSOCUG00000001111) #31	RENBP (ENSOCUG00000025840) #32	HCFC1 (ENSOCUG00000001113) #33	TMEM187 (ENSOCUG00000001116)	IRAK1 (ENSOCUG00000025860) #34	MECP2 (ENSOCUG00000013147) #37	OPN1MW (ENSOCUG00000011466)	TEX28 (ENSOCUG00000021000)
Pika	MODERN SPECIES	5351																ABCD1 (ENSOPRG00000002904) #22
Tree shrew	MODERN SPECIES	4618															BCAP31 (ENSTBEG00000012565) #21	ABCD1 (ENSTBEG00000012640) #22
Laurasiatheria	ANCESTRAL SPECIES	26	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37
Laurasiatheria_a	ANCESTRAL SPECIES	10	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT00910000146500	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT00910000146500	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35
Suina	ANCESTRAL SPECIES	7	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37
Chacoan peccary	MODERN SPECIES	64									BGN (ENSCWAG00000015339) #14	ATP2B3 (ENSCWAG00000014036) #15	CCNQ (ENSCWAG00000013960) #16	DUSP9 (ENSCWAG00000013930) #17	PNCK (ENSCWAG00000013628) #19	ENSCWAG00000013485 #20	BCAP31 (ENSCWAG00000013428) #21	ABCD1 (ENSCWAG00000013367) #22	PLXNB3 (ENSCWAG00000013064) #23	SRPK3 (ENSCWAG00000012244) #24	IDH3G (ENSCWAG00000012166) #25	SSR4 (ENSCWAG00000012103) #26	PDZD4 (ENSCWAG00000011881) #27	L1CAM (ENSCWAG00000010938) #28	AVPR2 (ENSCWAG00000010837) #29	ARHGAP4 (ENSCWAG00000010083) #30	NAA10 (ENSCWAG00000009933) #31	RENBP (ENSCWAG00000009675) #32	HCFC1 (ENSCWAG00000009363) #33	TMEM187 (ENSCWAG00000009330)	IRAK1 (ENSCWAG00000009234) #34	ENSCWAG00000009215 #35	MECP2 (ENSCWAG00000009014) #37
Pig	MODERN SPECIES	300	ENSSSCG00000048272	ENSSSCG00000059750	ENSSSCG00000057031	ENSSSCG00000035599 #9	ENSSSCG00000049239 #10	ENSSSCG00000030075 #9	ZFP92 (ENSSSCG00000012768) #12	HAUS7 (ENSSSCG00000012767) #13	BGN (ENSSSCG00000012766) #14	SLC6A8 (ENSSSCG00000012771) #20	ATP2B3 (ENSSSCG00000012769) #15	CCNQ (ENSSSCG00000012770) #16	DUSP9 (ENSSSCG00000012774) #17	PNCK (ENSSSCG00000012773) #19	BCAP31 (ENSSSCG00000012772) #21	ABCD1 (ENSSSCG00000012779) #22	PLXNB3 (ENSSSCG00000012780) #23	ENSSSCG00000024676 #24	ENSSSCG00000053900 #24	IDH3G (ENSSSCG00000012783) #25	SSR4 (ENSSSCG00000012784) #26	PDZD4 (ENSSSCG00000012785) #27	L1CAM (ENSSSCG00000012787) #28	AVPR2 (ENSSSCG00000012789) #29	ARHGAP4 (ENSSSCG00000012790) #30	NAA10 (ENSSSCG00000012791) #31	RENBP (ENSSSCG00000012792) #32	HCFC1 (ENSSSCG00000012793) #33	ENSSSCG00000050581	IRAK1 (ENSSSCG00000012795) #34	ENSSSCG00000059337 #35
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT00910000146500	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35
Artiodactyla_b	ANCESTRAL SPECIES	19	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT00910000146500	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37
Cetacea	ANCESTRAL SPECIES	19	ENSGT00940000155935	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT00910000146500	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37
Odontoceti	ANCESTRAL SPECIES	19	ENSGT00940000155935	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT00910000146500	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37
Odontoceti_a	ANCESTRAL SPECIES	21	ENSGT00940000155935	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v.e.a #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT00910000146500	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37
Odontoceti_b	ANCESTRAL SPECIES	17	ENSGT00940000155935	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v.e.a #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Monodontidae	ANCESTRAL SPECIES	19	ENSGT00940000155935	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT00950000185059.b.a.a	ENSGT00940000153582.b.a.a.b	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v.e.a #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b	ENSGT00940000162426
Beluga whale	MODERN SPECIES	139	ZNF185 (ENSDLEG00000008571)	ENSDLEG00000008777	ENSDLEG00000008821 ##9	ENSDLEG00000008874 ##9	ENSDLEG00000008903	ZFP92 (ENSDLEG00000008939) #12	TREX2 (ENSDLEG00000008947)	HAUS7 (ENSDLEG00000008961) #13	BGN (ENSDLEG00000009001) #14	ATP2B3 (ENSDLEG00000009068) #15	CCNQ (ENSDLEG00000009254) #16	DUSP9 (ENSDLEG00000009275) #17	PNCK (ENSDLEG00000009302) #19	ENSDLEG00000009357 #20	BCAP31 (ENSDLEG00000009436) #21	ABCD1 (ENSDLEG00000009490) #22	PLXNB3 (ENSDLEG00000009548) #23	SRPK3 (ENSDLEG00000009748) #24	IDH3G (ENSDLEG00000010539) #25	SSR4 (ENSDLEG00000010578) #26	PDZD4 (ENSDLEG00000010618) #27	L1CAM (ENSDLEG00000010633) #28	AVPR2 (ENSDLEG00000010715) #29	ARHGAP4 (ENSDLEG00000010745) #30	RENBP (ENSDLEG00000010782) #32	HCFC1 (ENSDLEG00000010826) #33	TMEM187 (ENSDLEG00000010884)	IRAK1 (ENSDLEG00000010892) #34	MECP2 (ENSDLEG00000010908) #37	ENSDLEG00000010916	TKTL1 (ENSDLEG00000010974)
Narwhal	MODERN SPECIES	309	CETN2 (ENSMMNG00015011652)	NSDHL (ENSMMNG00015011668)	ENSMMNG00015011709	ENSMMNG00015011751	PNMA5 (ENSMMNG00015011762) ##9	ZNF275 (ENSMMNG00015011779)	ENSMMNG00015011848 #12	TREX2 (ENSMMNG00015011851)	HAUS7 (ENSMMNG00015011870) #13	BGN (ENSMMNG00015011917) #14	ATP2B3 (ENSMMNG00015011983) #15	CCNQ (ENSMMNG00015012078) #16	DUSP9 (ENSMMNG00015012090) #17	PNCK (ENSMMNG00015012107) #19	BCAP31 (ENSMMNG00015012134) #21	ABCD1 (ENSMMNG00015012167) #22	PLXNB3 (ENSMMNG00015012205) #23	SRPK3 (ENSMMNG00015012303) #24	IDH3G (ENSMMNG00015012488) #25	SSR4 (ENSMMNG00015012518) #26	PDZD4 (ENSMMNG00015012532) #27	L1CAM (ENSMMNG00015012599) #28	AVPR2 (ENSMMNG00015012757) #29	ARHGAP4 (ENSMMNG00015012794) #30	RENBP (ENSMMNG00015012853) #32	HCFC1 (ENSMMNG00015012895) #33	TMEM187 (ENSMMNG00015012935)	IRAK1 (ENSMMNG00015012947) #34	MECP2 (ENSMMNG00015012982) #37	ENSMMNG00015013034	ENSMMNG00015013048 #9
Vaquita	MODERN SPECIES	34	ENSPSNG00000016703	ENSPSNG00000016766 ##9	ENSPSNG00000016858	ENSPSNG00000016906 #9	ZNF275 (ENSPSNG00000016963)	ZFP92 (ENSPSNG00000017091) #12	TREX2 (ENSPSNG00000017121)	HAUS7 (ENSPSNG00000017146) #13	BGN (ENSPSNG00000017293) #14	ATP2B3 (ENSPSNG00000017785) #15	CCNQ (ENSPSNG00000020074) #16	DUSP9 (ENSPSNG00000020127) #17	PNCK (ENSPSNG00000020162) #19	ENSPSNG00000020216 #20	BCAP31 (ENSPSNG00000020287) #21	ABCD1 (ENSPSNG00000020339) #22	PLXNB3 (ENSPSNG00000020397) #23	SRPK3 (ENSPSNG00000020624) #24	IDH3G (ENSPSNG00000021007) #25	SSR4 (ENSPSNG00000021050) #26	PDZD4 (ENSPSNG00000021105) #27	L1CAM (ENSPSNG00000021249) #28	AVPR2 (ENSPSNG00000021500) #29	ARHGAP4 (ENSPSNG00000021560) #30	NAA10 (ENSPSNG00000021621) #31	ENSPSNG00000021660 #32	HCFC1 (ENSPSNG00000021713) #33	TMEM187 (ENSPSNG00000021804)	IRAK1 (ENSPSNG00000021819) #34	MECP2 (ENSPSNG00000021858) #37	ENSPSNG00000021893
Dolphin	MODERN SPECIES	1323										ATP2B3 (ENSTTRG00000011664) #15	CCNQ (ENSTTRG00000011680) #16	DUSP9 (ENSTTRG00000011684) #17	PNCK (ENSTTRG00000011687) #19	ENSTTRG00000011689 #20	BCAP31 (ENSTTRG00000011698) #21	ABCD1 (ENSTTRG00000011702) #22	PLXNB3 (ENSTTRG00000011705) #23	SRPK3 (ENSTTRG00000011724) #24	IDH3G (ENSTTRG00000011728) #25
Sperm whale	MODERN SPECIES	13	ENSPCTG00005019056	CETN2 (ENSPCTG00005019083)	NSDHL (ENSPCTG00005019131)	ZNF185 (ENSPCTG00005019207)	ENSPCTG00005019540 ##9	ENSPCTG00005019569 #10	ZFP92 (ENSPCTG00005019580) #12	HAUS7 (ENSPCTG00005019634) #13	BGN (ENSPCTG00005019735) #14	ATP2B3 (ENSPCTG00005019806) #15	CCNQ (ENSPCTG00005020427) #16	DUSP9 (ENSPCTG00005020457) #17	PNCK (ENSPCTG00005020491) #19	SLC6A8 (ENSPCTG00005020619) #20	BCAP31 (ENSPCTG00005020665) #21	ABCD1 (ENSPCTG00005020693) #22	PLXNB3 (ENSPCTG00005020721) #23	SRPK3 (ENSPCTG00005020896) #24	IDH3G (ENSPCTG00005021222) #25	SSR4 (ENSPCTG00005021260) #26	PDZD4 (ENSPCTG00005021324) #27	L1CAM (ENSPCTG00005021438) #28	AVPR2 (ENSPCTG00005021602) #29	ARHGAP4 (ENSPCTG00005021658) #30	NAA10 (ENSPCTG00005021859) #31	RENBP (ENSPCTG00005021884) #32	HCFC1 (ENSPCTG00005021915) #33	ENSPCTG00005022009 #34	MECP2 (ENSPCTG00005022045) #37	ENSPCTG00005022067	TEX28 (ENSPCTG00005022073)
Blue whale	MODERN SPECIES	40	ENSBMSG00010021428	ENSBMSG00010021440	CETN2 (ENSBMSG00010021445)	NSDHL (ENSBMSG00010021450)	ZNF185 (ENSBMSG00010016223)	ZFP92 (ENSBMSG00010016386) #12	TREX2 (ENSBMSG00010016424)	HAUS7 (ENSBMSG00010016441) #13	BGN (ENSBMSG00010016563) #14	ATP2B3 (ENSBMSG00010016642) #15	CCNQ (ENSBMSG00010017295) #16	DUSP9 (ENSBMSG00010017328) #17	PNCK (ENSBMSG00010017371) #19	ENSBMSG00010017516 #20	BCAP31 (ENSBMSG00010017577) #21	ABCD1 (ENSBMSG00010017634) #22	PLXNB3 (ENSBMSG00010017695) #23	SRPK3 (ENSBMSG00010017917) #24	IDH3G (ENSBMSG00010018140) #25	SSR4 (ENSBMSG00010018296) #26	PDZD4 (ENSBMSG00010018349) #27	L1CAM (ENSBMSG00010018510) #28	AVPR2 (ENSBMSG00010018770) #29	ARHGAP4 (ENSBMSG00010018853) #30	NAA10 (ENSBMSG00010019439) #31	RENBP (ENSBMSG00010019364) #32	HCFC1 (ENSBMSG00010019528) #33	TMEM187 (ENSBMSG00010019836)	IRAK1 (ENSBMSG00010019854) #34	MECP2 (ENSBMSG00010019964) #37	ENSBMSG00010020090
Pecora	ANCESTRAL SPECIES	38		ENSGT00390000001700.a.b.b.a.a	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000026691	ENSCHYG00000026686	ENSCHYG00000026676	ENSCHYG00000026670	ENSCHYG00000026662 #9	ENSCHYG00000026653 #12	TREX2 (ENSCHYG00000026645)	HAUS7 (ENSCHYG00000026596) #13	BGN (ENSCHYG00000026554) #14	ATP2B3 (ENSCHYG00000026445) #15	CCNQ (ENSCHYG00000026390) #16	DUSP9 (ENSCHYG00000026372) #17	PNCK (ENSCHYG00000026358) #19	ENSCHYG00000026332 #20	ENSCHYG00000026299 #21	ABCD1 (ENSCHYG00000026259) #22	PLXNB3 (ENSCHYG00000026217) #23	SRPK3 (ENSCHYG00000026187) #24	ENSCHYG00000026148 #25	ENSCHYG00000026124 #26	PDZD4 (ENSCHYG00000026107) #27	L1CAM (ENSCHYG00000025877) #28	AVPR2 (ENSCHYG00000025838) #29	ARHGAP4 (ENSCHYG00000025566) #30	ENSCHYG00000025281 #31	RENBP (ENSCHYG00000025248) #32	HCFC1 (ENSCHYG00000025112) #33	IRAK1 (ENSCHYG00000024907) #34	MECP2 (ENSCHYG00000024843) #37	ENSCHYG00000024807	TEX28 (ENSCHYG00000024783)
Percora_a	ANCESTRAL SPECIES	35		ENSGT00390000001700.a.b.b.a.a	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Siberian musk deer	MODERN SPECIES	14			ENSMMSG00000017989	ENSMMSG00000017963 #9	ENSMMSG00000017951	ENSMMSG00000017851	TREX2 (ENSMMSG00000017821)	HAUS7 (ENSMMSG00000017752) #13	BGN (ENSMMSG00000017708) #14	ATP2B3 (ENSMMSG00000017117) #15	CCNQ (ENSMMSG00000017061) #16	DUSP9 (ENSMMSG00000017038) #17	PNCK (ENSMMSG00000016992) #19	ENSMMSG00000016948 #20	BCAP31 (ENSMMSG00000016925) #21	ABCD1 (ENSMMSG00000016894) #22	PLXNB3 (ENSMMSG00000016798) #23	SRPK3 (ENSMMSG00000016477) #24	IDH3G (ENSMMSG00000016400) #25	SSR4 (ENSMMSG00000016336) #26	PDZD4 (ENSMMSG00000016210) #27	L1CAM (ENSMMSG00000015717) #28	AVPR2 (ENSMMSG00000015654) #29	ARHGAP4 (ENSMMSG00000015607) #30	NAA10 (ENSMMSG00000015542) #31	RENBP (ENSMMSG00000015497) #32	HCFC1 (ENSMMSG00000015453) #33	TMEM187 (ENSMMSG00000015428)	IRAK1 (ENSMMSG00000015351) #34	ENSMMSG00000015287 #37	ENSMMSG00000015261
Bovidae	ANCESTRAL SPECIES	33		ENSGT00390000001700.a.b.b.a.a	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Caprinae	ANCESTRAL SPECIES	45	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT00390000001700.a.b.b.a.a	ENSGT00940000162921	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Rambouillet Sheep	MODERN SPECIES	205	ENSOARG00020024990	ENSOARG00020024988	ENSOARG00020024977	ENSOARG00020024974	ENSOARG00020024952 #9	ZFP92 (ENSOARG00020024935) #12	TREX2 (ENSOARG00020024928)	HAUS7 (ENSOARG00020024905) #13	BGN (ENSOARG00020024895) #14	ATP2B3 (ENSOARG00020024861) #15	CCNQ (ENSOARG00020024846) #16	DUSP9 (ENSOARG00020024837) #17	PNCK (ENSOARG00020024721) #19	ENSOARG00020024643 #20	BCAP31 (ENSOARG00020024614) #21	ABCD1 (ENSOARG00020024584) #22	PLXNB3 (ENSOARG00020024564) #23	IDH3G (ENSOARG00020024407) #25	SSR4 (ENSOARG00020024383) #26	PDZD4 (ENSOARG00020024315) #27	L1CAM (ENSOARG00020023921) #28	AVPR2 (ENSOARG00020023848) #29	ARHGAP4 (ENSOARG00020023326) #30	NAA10 (ENSOARG00020023246) #31	RENBP (ENSOARG00020023053) #32	HCFC1 (ENSOARG00020022415) #33	TMEM187 (ENSOARG00020022375)	IRAK1 (ENSOARG00020022349) #34	MECP2 (ENSOARG00020022209) #37	OPN1LW (ENSOARG00020022140)	TKTL1 (ENSOARG00020021994)
Goat	MODERN SPECIES	65											CCNQ (ENSCHIG00000016499) #16	DUSP9 (ENSCHIG00000012585) #17	PNCK (ENSCHIG00000003212) #19	ENSCHIG00000021442 #20	BCAP31 (ENSCHIG00000012576) #21	ABCD1 (ENSCHIG00000020085) #22	PLXNB3 (ENSCHIG00000012234) #23	SRPK3 (ENSCHIG00000002559) #24	IDH3G (ENSCHIG00000016785) #25	SSR4 (ENSCHIG00000006805) #26	PDZD4 (ENSCHIG00000000364) #27
Bovinae	ANCESTRAL SPECIES	46			ENSGT00390000001700.a.b.b.a.a	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Bos	ANCESTRAL SPECIES	36	ENSGT00940000159803	ENSGT01030000235238.e.b	ENSGT00390000001700.a.b.b.a.a	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Bos_a	ANCESTRAL SPECIES	39	ENSGT00940000159803	ENSGT01030000235238.e.b	ENSGT00390000001700.a.b.b.a.a	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Wild yak	MODERN SPECIES	2346												DUSP9 (ENSBMUG00000011871) #17	PNCK (ENSBMUG00000011937) #19	ENSBMUG00000011967 #20	BCAP31 (ENSBMUG00000011987) #21	ABCD1 (ENSBMUG00000012003) #22	PLXNB3 (ENSBMUG00000012298) #23	SRPK3 (ENSBMUG00000012477) #24	IDH3G (ENSBMUG00000012493) #25	SSR4 (ENSBMUG00000012499) #26	PDZD4 (ENSBMUG00000012542) #27	L1CAM (ENSBMUG00000012610) #28	AVPR2 (ENSBMUG00000012644) #29	ARHGAP4 (ENSBMUG00000012757) #30	NAA10 (ENSBMUG00000012855) #31	RENBP (ENSBMUG00000012951) #32
Domestic yak	MODERN SPECIES	69	DKC1 (ENSBGRG00000017777)	GAB3 (ENSBGRG00000018202)	ENSBGRG00000018336	ENSBGRG00000018361	ENSBGRG00000018441	ENSBGRG00000018662 #12	HAUS7 (ENSBGRG00000018702) #13	ENSBGRG00000018982	BGN (ENSBGRG00000019034) #14	ATP2B3 (ENSBGRG00000019084) #15	CCNQ (ENSBGRG00000019445) #16	DUSP9 (ENSBGRG00000019532) #17	ENSBGRG00000019589 #19	ENSBGRG00000019737 #20	BCAP31 (ENSBGRG00000019806) #21	ABCD1 (ENSBGRG00000019899) #22	SRPK3 (ENSBGRG00000020582) #24	IDH3G (ENSBGRG00000020629) #25	ENSBGRG00000020770 #26	PDZD4 (ENSBGRG00000020897) #27	ENSBGRG00000020944	L1CAM (ENSBGRG00000020974) #28	AVPR2 (ENSBGRG00000021537) #29	ARHGAP4 (ENSBGRG00000021595) #30	NAA10 (ENSBGRG00000021764) #31	RENBP (ENSBGRG00000021852) #32	HCFC1 (ENSBGRG00000021965) #33	TMEM187 (ENSBGRG00000023012)	IRAK1 (ENSBGRG00000023042) #34	MECP2 (ENSBGRG00000023220) #37	ENSBGRG00000023305
Bos_b	ANCESTRAL SPECIES	31	ENSGT00510000047092	ENSGT00940000159803	ENSGT00390000001700.a.b.b.a.a	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Hybrid Bos Indicus	MODERN SPECIES	315	DKC1 (ENSBIXG00005011665)	GAB3 (ENSBIXG00005011700)	ENSBIXG00005011731	ENSBIXG00005001157	ENSBIXG00005011758 #9	ENSBIXG00005011766 #12	HAUS7 (ENSBIXG00005001172) #13	ENSBIXG00005011824	BGN (ENSBIXG00005011869) #14	ATP2B3 (ENSBIXG00005001219) #15	CCNQ (ENSBIXG00005012024) #16	ENSBIXG00005012054 #17	PNCK (ENSBIXG00005012167) #19	ENSBIXG00005012235 #20	BCAP31 (ENSBIXG00005012267) #21	ABCD1 (ENSBIXG00005001289) #22	PLXNB3 (ENSBIXG00005012308) #23	SRPK3 (ENSBIXG00005012339) #24	SSR4 (ENSBIXG00005012375) #26	PDZD4 (ENSBIXG00005012442) #27	ENSBIXG00005012493	L1CAM (ENSBIXG00005012618) #28	AVPR2 (ENSBIXG00005012700) #29	ARHGAP4 (ENSBIXG00005001429) #30	NAA10 (ENSBIXG00005012916) #31	RENBP (ENSBIXG00005007005) #32	HCFC1 (ENSBIXG00005013025) #33	TMEM187 (ENSBIXG00005013053)	IRAK1 (ENSBIXG00005013081) #34	ENSBIXG00005013100	MECP2 (ENSBIXG00005013169) #37
Cow	MODERN SPECIES	177	MPP1 (ENSBTAG00000013046)	DKC1 (ENSBTAG00000013045)	GAB3 (ENSBTAG00000013044)	ENSBTAG00000023820	ENSBTAG00000020185	ENSBTAG00000047917 #9	ENSBTAG00000050830 #12	HAUS7 (ENSBTAG00000014095) #13	BGN (ENSBTAG00000005250) #14	ATP2B3 (ENSBTAG00000000520) #15	CCNQ (ENSBTAG00000011350) #16	DUSP9 (ENSBTAG00000008319) #17	PNCK (ENSBTAG00000017430) #19	SLC6A8 (ENSBTAG00000009959) #20	BCAP31 (ENSBTAG00000020547) #21	ABCD1 (ENSBTAG00000020551) #22	PLXNB3 (ENSBTAG00000010146) #23	SRPK3 (ENSBTAG00000001058) #24	IDH3G (ENSBTAG00000001059) #25	SSR4 (ENSBTAG00000021421) #26	PDZD4 (ENSBTAG00000021422) #27	ENSBTAG00000038379	L1CAM (ENSBTAG00000013462) #28	AVPR2 (ENSBTAG00000047138) #29	ARHGAP4 (ENSBTAG00000047531) #30	NAA10 (ENSBTAG00000047702) #31	RENBP (ENSBTAG00000047827) #32	HCFC1 (ENSBTAG00000011904) #33	TMEM187 (ENSBTAG00000008278)	IRAK1 (ENSBTAG00000016085) #34	MECP2 (ENSBTAG00000047855) #37
Camelidae	ANCESTRAL SPECIES	80	ENSGT00940000162167	ENSGT00940000155935	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b ##9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00910000146917 #35	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Arabian camel	MODERN SPECIES	204	ENSCDRG00005020698	ENSCDRG00005020708 #17	ENSCDRG00005020712	ENSCDRG00005020724	ENSCDRG00005020729 ##9	ENSCDRG00005020767	ZFP92 (ENSCDRG00005020817) #12	TREX2 (ENSCDRG00005020829)	HAUS7 (ENSCDRG00005020839) #13	BGN (ENSCDRG00005020868) #14	ATP2B3 (ENSCDRG00005020884) #15	CCNQ (ENSCDRG00005020899) #16	PNCK (ENSCDRG00005020913) #19	ENSCDRG00005020937 #20	BCAP31 (ENSCDRG00005020943) #21	ABCD1 (ENSCDRG00005020958) #22	SRPK3 (ENSCDRG00005020984) #24	ENSCDRG00005008129	IDH3G (ENSCDRG00005008174) #25	SSR4 (ENSCDRG00005008385) #26	PDZD4 (ENSCDRG00005008529) #27	L1CAM (ENSCDRG00005008678) #28	AVPR2 (ENSCDRG00005009433) #29	ARHGAP4 (ENSCDRG00005009571) #30	NAA10 (ENSCDRG00005010090) #31	RENBP (ENSCDRG00005010267) #32	HCFC1 (ENSCDRG00005010537) #33	TMEM187 (ENSCDRG00005011270)	IRAK1 (ENSCDRG00005011306) #34	ENSCDRG00005011350 #35	MECP2 (ENSCDRG00005011374) #37
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT00390000000062.x.b	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT00910000146500	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT00390000001700.a.b.b	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00940000154488.B	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT00910000146500	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37
Chiroptera	ANCESTRAL SPECIES	48	ENSGT00910000144363	ENSGT00940000155935	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT00910000146500	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37
Microchiroptera	ANCESTRAL SPECIES	45	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Microbat	MODERN SPECIES	977	ENSMLUG00000025329 ##9	ENSMLUG00000023246	ENSMLUG00000025774	ENSMLUG00000006827	ENSMLUG00000028854 #9	TREX2 (ENSMLUG00000027143)	ENSMLUG00000010516 #13	ENSMLUG00000025983	ENSMLUG00000010569 #14	ATP2B3 (ENSMLUG00000010583) #15	CCNQ (ENSMLUG00000012844) #16	DUSP9 (ENSMLUG00000008666) #17	PNCK (ENSMLUG00000008649) #19	ENSMLUG00000004391 #20	BCAP31 (ENSMLUG00000004416) #21	ABCD1 (ENSMLUG00000004423) #22	PLXNB3 (ENSMLUG00000004428) #23	SRPK3 (ENSMLUG00000004445) #24	ENSMLUG00000004457 #25	SSR4 (ENSMLUG00000004462) #26	PDZD4 (ENSMLUG00000004464) #27	L1CAM (ENSMLUG00000014234) #28	AVPR2 (ENSMLUG00000014253) #29	ARHGAP4 (ENSMLUG00000014257) #30	NAA10 (ENSMLUG00000014267) #31	RENBP (ENSMLUG00000014271) #32	HCFC1 (ENSMLUG00000014275) #33	TMEM187 (ENSMLUG00000014286)	IRAK1 (ENSMLUG00000014288) #34	MECP2 (ENSMLUG00000014297) #37	ENSMLUG00000024727
Greater horseshoe bat	MODERN SPECIES		PNMA3 (ENSRFEG00010005848) ##9	ENSRFEG00010005818	ENSRFEG00010005799	ENSRFEG00010005753 #9	ENSRFEG00010005702	ENSRFEG00010005686 #9	ENSRFEG00010005660	HAUS7 (ENSRFEG00010005503) #13	BGN (ENSRFEG00010005401) #14	ATP2B3 (ENSRFEG00010005284) #15	CCNQ (ENSRFEG00010005249) #16	DUSP9 (ENSRFEG00010005234) #17	PNCK (ENSRFEG00010005195) #19	ENSRFEG00010005165 #20	BCAP31 (ENSRFEG00010005136) #21	ABCD1 (ENSRFEG00010005067) #22	PLXNB3 (ENSRFEG00010005005) #23	SRPK3 (ENSRFEG00010004974) #24	IDH3G (ENSRFEG00010004950) #25	SSR4 (ENSRFEG00010004934) #26	PDZD4 (ENSRFEG00010004912) #27	L1CAM (ENSRFEG00010004838) #28	ENSRFEG00010004798	AVPR2 (ENSRFEG00010004785) #29	ARHGAP4 (ENSRFEG00010004760) #30	ARD1A (ENSRFEG00010004730) #31	RENBP (ENSRFEG00010004689) #32	HCFC1 (ENSRFEG00010004542) #33	TMEM187 (ENSRFEG00010004460)	IRAK1 (ENSRFEG00010004369) #34	MECP2 (ENSRFEG00010004285) #37
Megabat	MODERN SPECIES	2837															BCAP31 (ENSPVAG00000013157) #21	ABCD1 (ENSPVAG00000013159) #22	PLXNB3 (ENSPVAG00000013160) #23	SRPK3 (ENSPVAG00000013161) #24	IDH3G (ENSPVAG00000013163) #25	SSR4 (ENSPVAG00000013165) #26	PDZD4 (ENSPVAG00000013166) #27
Equus	ANCESTRAL SPECIES	52	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.hb.b #9	ENSGT00390000001700.a.b.b	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b.ib #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Horse	MODERN SPECIES	480	ENSECAG00000035483 #9	ENSECAG00000056746	ENSECAG00000030904	ENSECAG00000028315 #9	ENSECAG00000014611	ZFP92 (ENSECAG00000015856) #12	HAUS7 (ENSECAG00000016027) #13	ECMX (ENSECAG00000018701)	BGN (ENSECAG00000018717) #14	ATP2B3 (ENSECAG00000023490) #15	CCNQ (ENSECAG00000026922) #16	DUSP9 (ENSECAG00000013650) #17	PNCK (ENSECAG00000036146) #19	SLC6A8 (ENSECAG00000013965) #20	BCAP31 (ENSECAG00000022787) #21	ABCD1 (ENSECAG00000022935) #22	PLXNB3 (ENSECAG00000000639) #23	SRPK3 (ENSECAG00000058187) #24	IDH3G (ENSECAG00000018509) #25	SSR4 (ENSECAG00000023150) #26	PDZD4 (ENSECAG00000024310) #27	L1CAM (ENSECAG00000002810) #28	AVPR2 (ENSECAG00000022974) #29	ARHGAP4 (ENSECAG00000023201) #30	NAA10 (ENSECAG00000015203) #31	RENBP (ENSECAG00000018888) #32	HCFC1 (ENSECAG00000022440) #33	TMEM187 (ENSECAG00000001086)	IRAK1 (ENSECAG00000009585) #34	MECP2 (ENSECAG00000018208) #37	OPN1LW (ENSECAG00000018684)
Donkey	MODERN SPECIES	36	ENSEASG00005031334 #9	ENSEASG00005033113 #9	ENSEASG00005026052 #9	ENSEASG00005035618 #9	ENSEASG00005023652	ENSEASG00005036517 #12	TREX2 (ENSEASG00005019558)	HAUS7 (ENSEASG00005019556) #13	BGN (ENSEASG00005035268) #14	ATP2B3 (ENSEASG00005019538) #15	CCNQ (ENSEASG00005019537) #16	DUSP9 (ENSEASG00005019536) #17	PNCK (ENSEASG00005019534) #19	ENSEASG00005019533 #20	BCAP31 (ENSEASG00005019531) #21	ABCD1 (ENSEASG00005019529) #22	PLXNB3 (ENSEASG00005019471) #23	SRPK3 (ENSEASG00005019451) #24	IDH3G (ENSEASG00005019382) #25	SSR4 (ENSEASG00005019363) #26	PDZD4 (ENSEASG00005028120) #27	L1CAM (ENSEASG00005019353) #28	AVPR2 (ENSEASG00005027808) #29	ARHGAP4 (ENSEASG00005019296) #30	NAA10 (ENSEASG00005030165) #31	RENBP (ENSEASG00005019286) #32	HCFC1 (ENSEASG00005019244) #33	TMEM187 (ENSEASG00005038494)	IRAK1 (ENSEASG00005019196) #34	MECP2 (ENSEASG00005019188) #37	ENSEASG00005019183
Carnivora	ANCESTRAL SPECIES	11	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Caniformia	ANCESTRAL SPECIES	22	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Caniformia_b	ANCESTRAL SPECIES	27	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Ursidae	ANCESTRAL SPECIES	45	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.a.b ##9	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C.b #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c.h #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b.b
Ursus	ANCESTRAL SPECIES	211				ENSGT00390000000062.x.b	ENSGT00390000001700.a.b.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C.b #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000155869.v #20	ENSGT00390000011863.c.h #21	ENSGT00950000182955.a.b.a #22	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27
American black bear	DUPLICATION
American black bear	MODERN SPECIES	1159															BCAP31 (ENSUAMG00000016228) #21	ENSUAMG00000016226 #22	ENSUAMG00000016225 #22	SRPK3 (ENSUAMG00000016190) #24	IDH3G (ENSUAMG00000016165) #25	SSR4 (ENSUAMG00000016144) #26	PDZD4 (ENSUAMG00000016140) #27
American black bear	MODERN SPECIES	1159														BCAP31 (ENSUAMG00000016228) #21	ENSUAMG00000016226 #22	ENSUAMG00000016225 #22	SRPK3 (ENSUAMG00000016190) #24	IDH3G (ENSUAMG00000016165) #25	SSR4 (ENSUAMG00000016144) #26	PDZD4 (ENSUAMG00000016140) #27
Giant Panda	MODERN SPECIES	2288	CETN2 (ENSAMEG00000000364)	NSDHL (ENSAMEG00000000343)	ZNF185 (ENSAMEG00000000294)	ENSAMEG00000000291 ##9	ENSAMEG00000024870	ENSAMEG00000029889 #9	ENSAMEG00000008936 #12	TREX2 (ENSAMEG00000008933)	HAUS7 (ENSAMEG00000008916) #13	BGN (ENSAMEG00000008895) #14	ATP2B3 (ENSAMEG00000008798) #15	CCNQ (ENSAMEG00000008792) #16	DUSP9 (ENSAMEG00000023668) #17	PNCK (ENSAMEG00000008740) #19	BCAP31 (ENSAMEG00000008719) #21	ABCD1 (ENSAMEG00000008692) #22	PLXNB3 (ENSAMEG00000018468) #23	SRPK3 (ENSAMEG00000018467) #24	IDH3G (ENSAMEG00000018466) #25	SSR4 (ENSAMEG00000018465) #26	PDZD4 (ENSAMEG00000018464) #27	ENSAMEG00000009528	L1CAM (ENSAMEG00000018461) #28	AVPR2 (ENSAMEG00000018460) #29	ARHGAP4 (ENSAMEG00000018458) #30	NAA10 (ENSAMEG00000018457) #31	RENBP (ENSAMEG00000018452) #32	HCFC1 (ENSAMEG00000018450) #33	TMEM187 (ENSAMEG00000019206)	IRAK1 (ENSAMEG00000018449) #34	MECP2 (ENSAMEG00000029148) #37
Mustelinae	ANCESTRAL SPECIES	108			ENSGT00390000001700.a.b.b	ENSGT00940000162921	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
American mink	MODERN SPECIES	402				ENSNVIG00000024011	ENSNVIG00000024008	ENSNVIG00000024007 #9	ZFP92 (ENSNVIG00000024006) #12	HAUS7 (ENSNVIG00000024002) #13	BGN (ENSNVIG00000023999) #14	ATP2B3 (ENSNVIG00000023990) #15	CCNQ (ENSNVIG00000023988) #16	DUSP9 (ENSNVIG00000023986) #17	PNCK (ENSNVIG00000023984) #19	ENSNVIG00000023983 #20	BAP31 (ENSNVIG00000023982) #21	ABCD1 (ENSNVIG00000023981) #22	PLXNB3 (ENSNVIG00000023976) #23	SRPK3 (ENSNVIG00000023970) #24	IDH3G (ENSNVIG00000023966) #25	SSR4 (ENSNVIG00000023964) #26	PDZD4 (ENSNVIG00000023958) #27	L1CAM (ENSNVIG00000023921) #28	AVPR2 (ENSNVIG00000023918) #29	ARHGAP4 (ENSNVIG00000023893) #30	NAA10 (ENSNVIG00000023879) #31	RENBP (ENSNVIG00000023874) #32	HCFC1 (ENSNVIG00000023869) #33	ENSNVIG00000023868	IRAK1 (ENSNVIG00000023867) #34	MECP2 (ENSNVIG00000023863) #37	ENSNVIG00000023859
Ferret	MODERN SPECIES	531															BCAP31 (ENSMPUG00000008469) #21	ABCD1 (ENSMPUG00000008475) #22	PLXNB3 (ENSMPUG00000008484) #23	SRPK3 (ENSMPUG00000008795) #24	IDH3G (ENSMPUG00000008781) #25	ENSMPUG00000008803 #26	PDZD4 (ENSMPUG00000008855) #27	L1CAM (ENSMPUG00000008943) #28	ARHGAP4 (ENSMPUG00000008967) #30	AVPR2 (ENSMPUG00000008979) #29	NAA10 (ENSMPUG00000008989) #31	HCFC1 (ENSMPUG00000009029) #33	ENSMPUG00000009052	IRAK1 (ENSMPUG00000009059) #34	MECP2 (ENSMPUG00000009072) #37	ENSMPUG00000009081	TEX28 (ENSMPUG00000009202)
Canidae	ANCESTRAL SPECIES	50	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##9	ENSGT00390000001700.a.b.b.n	ENSGT00390000000062.x.b	ENSGT00390000001700.a.b.b.m.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Red fox	DUPLICATION
Red fox	MODERN SPECIES	263			ENSVVUG00000029721	ENSVVUG00000029719	ENSVVUG00000029716 #9	ZFP92 (ENSVVUG00000029715) #12	TREX2 (ENSVVUG00000029714)	HAUS7 (ENSVVUG00000029713) #13	BGN (ENSVVUG00000029707) #14	ATP2B3 (ENSVVUG00000029706) #15	CCNQ (ENSVVUG00000029705) #16	DUSP9 (ENSVVUG00000029702) #17	PNCK (ENSVVUG00000029700) #19	ENSVVUG00000029699 #20	ENSVVUG00000029696 #21	ENSVVUG00000029695 #22	ENSVVUG00000029694 #22	PLXNB3 (ENSVVUG00000029634) #23	IDH3G (ENSVVUG00000029622) #25	ENSVVUG00000029621 #26	PDZD4 (ENSVVUG00000029620) #27	L1CAM (ENSVVUG00000029611) #28	AVPR2 (ENSVVUG00000029607) #29	ARHGAP4 (ENSVVUG00000029605) #30	NAA10 (ENSVVUG00000029603) #31	RENBP (ENSVVUG00000029602) #32	HCFC1 (ENSVVUG00000029596) #33	TMEM187 (ENSVVUG00000029595)	IRAK1 (ENSVVUG00000029594) #34	MECP2 (ENSVVUG00000029591) #37	ENSVVUG00000029585
Red fox	MODERN SPECIES	263		ENSVVUG00000029721	ENSVVUG00000029719	ENSVVUG00000029716 #9	ZFP92 (ENSVVUG00000029715) #12	TREX2 (ENSVVUG00000029714)	HAUS7 (ENSVVUG00000029713) #13	BGN (ENSVVUG00000029707) #14	ATP2B3 (ENSVVUG00000029706) #15	CCNQ (ENSVVUG00000029705) #16	DUSP9 (ENSVVUG00000029702) #17	PNCK (ENSVVUG00000029700) #19	ENSVVUG00000029699 #20	ENSVVUG00000029696 #21	ENSVVUG00000029695 #22	ENSVVUG00000029694 #22	PLXNB3 (ENSVVUG00000029634) #23	IDH3G (ENSVVUG00000029622) #25	ENSVVUG00000029621 #26	PDZD4 (ENSVVUG00000029620) #27	L1CAM (ENSVVUG00000029611) #28	AVPR2 (ENSVVUG00000029607) #29	ARHGAP4 (ENSVVUG00000029605) #30	NAA10 (ENSVVUG00000029603) #31	RENBP (ENSVVUG00000029602) #32	HCFC1 (ENSVVUG00000029596) #33	TMEM187 (ENSVVUG00000029595)	IRAK1 (ENSVVUG00000029594) #34	MECP2 (ENSVVUG00000029591) #37	ENSVVUG00000029585	TKTL1 (ENSVVUG00000029580)
Canis_lupus	ANCESTRAL SPECIES	22	ENSGT00390000001700.a.b.b.n	ENSGT00390000000062.x.b	ENSGT00390000001700.a.b.b.m.b.a	ENSGT00940000162921	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Dog	MODERN SPECIES	144	ENSCAFG00845022582	ENSCAFG00845022611 ##9	ENSCAFG00845022640 ##9	ENSCAFG00845022693	ENSCAFG00845022737	ENSCAFG00845022788	ENSCAFG00845022808	ZFP92 (ENSCAFG00845023007) #12	BGN (ENSCAFG00845023053) #14	ATP2B3 (ENSCAFG00845023172) #15	CCNQ (ENSCAFG00845023588) #16	DUSP9 (ENSCAFG00845023663) #17	ENSCAFG00845023730 #19	ENSCAFG00845023957 #20	BCAP31 (ENSCAFG00845024213) #21	ABCD1 (ENSCAFG00845024327) #22	PLXNB3 (ENSCAFG00845024556) #23	SRPK3 (ENSCAFG00845024967) #24	IDH3G (ENSCAFG00845025145) #25	SSR4 (ENSCAFG00845025375) #26	PDZD4 (ENSCAFG00845025486) #27	L1CAM (ENSCAFG00845025647) #28	AVPR2 (ENSCAFG00845026015) #29	ARHGAP4 (ENSCAFG00845026108) #30	RENBP (ENSCAFG00845026554) #31	HCFC1 (ENSCAFG00845026790) #33	TMEM187 (ENSCAFG00845027090)	IRAK1 (ENSCAFG00845027126) #34	MECP2 (ENSCAFG00845027255) #37	OPN1LW (ENSCAFG00845027363)	TEX28 (ENSCAFG00845027400)
Dingo	MODERN SPECIES	383	ZNF185 (ENSCAFG00020023207)	ENSCAFG00020023204 ##9	ENSCAFG00020023200	ENSCAFG00020023197	ENSCAFG00020023196 #9	ENSCAFG00020023194 #12	TREX2 (ENSCAFG00020023190)	HAUS7 (ENSCAFG00020023188) #13	BGN (ENSCAFG00020023184) #14	ATP2B3 (ENSCAFG00020022993) #15	CCNQ (ENSCAFG00020022953) #16	DUSP9 (ENSCAFG00020022952) #17	PNCK (ENSCAFG00020022950) #19	ENSCAFG00020022949 #20	BCAP31 (ENSCAFG00020022946) #21	ABCD1 (ENSCAFG00020022942) #22	PLXNB3 (ENSCAFG00020022936) #23	SRPK3 (ENSCAFG00020022932) #24	IDH3G (ENSCAFG00020022931) #25	SSR4 (ENSCAFG00020022930) #26	PDZD4 (ENSCAFG00020022928) #27	L1CAM (ENSCAFG00020022925) #28	AVPR2 (ENSCAFG00020022923) #29	ARHGAP4 (ENSCAFG00020022156) #30	NAA10 (ENSCAFG00020022123) #31	RENBP (ENSCAFG00020022111) #32	HCFC1 (ENSCAFG00020022091) #33	IRAK1 (ENSCAFG00020022089) #34	MECP2 (ENSCAFG00020022079) #37	ENSCAFG00020022061	TEX28 (ENSCAFG00020022059)
Felidae	ANCESTRAL SPECIES	29				ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000154488.B	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Panthera	ANCESTRAL SPECIES	56				ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000154488.B	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
Panthera_a	ANCESTRAL SPECIES	65				ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000154488.B	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869.v #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT01030000234549.a.a.a.b
leopard	MODERN SPECIES	214				ENSPPRG00000013055 #10	ENSPPRG00000013646 #9	TREX2 (ENSPPRG00000017457)	HAUS7 (ENSPPRG00000014451) #13	BGN (ENSPPRG00000014620) #14	ATP2B3 (ENSPPRG00000024167) #15	CCNQ (ENSPPRG00000024044) #16	DUSP9 (ENSPPRG00000023875) #17	ENSPPRG00000000433 #19	PNCK (ENSPPRG00000002563) #19	ENSPPRG00000002840 #20	BCAP31 (ENSPPRG00000003191) #21	ABCD1 (ENSPPRG00000003214) #22	SRPK3 (ENSPPRG00000006472) #24	IDH3G (ENSPPRG00000007090) #25	SSR4 (ENSPPRG00000007302) #26	PDZD4 (ENSPPRG00000007757) #27	L1CAM (ENSPPRG00000010911) #28	ENSPPRG00000011145	AVPR2 (ENSPPRG00000011559) #29	ARHGAP4 (ENSPPRG00000019046) #30	NAA10 (ENSPPRG00000021297) #31	RENBP (ENSPPRG00000000874) #32	HCFC1 (ENSPPRG00000001673) #33	IRAK1 (ENSPPRG00000002790) #34	MECP2 (ENSPPRG00000004602) #37	ENSPPRG00000005526	TKTL1 (ENSPPRG00000005619)
lion	MODERN SPECIES	50							TREX2 (ENSPLOG00000017143)	ENSPLOG00000017109 #13	BGN (ENSPLOG00000017044) #14	ATP2B3 (ENSPLOG00000016345) #15	CCNQ (ENSPLOG00000016196) #16	DUSP9 (ENSPLOG00000016155) #17	PNCK (ENSPLOG00000015960) #19	ENSPLOG00000015847 #20	BCAP31 (ENSPLOG00000015741) #21	ABCD1 (ENSPLOG00000015686) #22	PLXNB3 (ENSPLOG00000015318) #23	SRPK3 (ENSPLOG00000014529) #24	IDH3G (ENSPLOG00000014245) #25	SSR4 (ENSPLOG00000014154) #26	PDZD4 (ENSPLOG00000013907) #27	L1CAM (ENSPLOG00000013396) #28	AVPR2 (ENSPLOG00000013280) #29	ARHGAP4 (ENSPLOG00000012775) #30	NAA10 (ENSPLOG00000012684) #31	RENBP (ENSPLOG00000012442) #32	HCFC1 (ENSPLOG00000011916) #33	TMEM187 (ENSPLOG00000011845)	IRAK1 (ENSPLOG00000011465) #34	MECP2 (ENSPLOG00000011316) #37	ENSPLOG00000011231
Tiger	MODERN SPECIES	495									ENSPTIG00000009101	TREX2 (ENSPTIG00000009039)	HAUS7 (ENSPTIG00000009010) #13	BGN (ENSPTIG00000008982) #14	ATP2B3 (ENSPTIG00000008852) #15	CCNQ (ENSPTIG00000008832) #16	BCAP31 (ENSPTIG00000008801) #21	ENSPTIG00000007840 #22
Cat	MODERN SPECIES	252	NSDHL (ENSFCAG00000004907)	ZNF185 (ENSFCAG00000004911)	ENSFCAG00000052684 #9	PNMA3 (ENSFCAG00000003125) ##9	ENSFCAG00000041838	ENSFCAG00000052212	ENSFCAG00000004665	TREX2 (ENSFCAG00000018938)	HAUS7 (ENSFCAG00000004027) #13	ATP2B3 (ENSFCAG00000004031) #15	CCNQ (ENSFCAG00000004033) #16	DUSP9 (ENSFCAG00000004034) #17	PNCK (ENSFCAG00000004035) #19	ENSFCAG00000004036 #20	BCAP31 (ENSFCAG00000004037) #21	ABCD1 (ENSFCAG00000004038) #22	PLXNB3 (ENSFCAG00000004039) #23	SRPK3 (ENSFCAG00000043991) #24	IDH3G (ENSFCAG00000033410) #25	SSR4 (ENSFCAG00000004040) #26	ARHGAP4 (ENSFCAG00000011385) #30	L1CAM (ENSFCAG00000008614) #28	AVPR2 (ENSFCAG00000011384) #29	NAA10 (ENSFCAG00000028705) #31	RENBP (ENSFCAG00000018690) #32	HCFC1 (ENSFCAG00000011387) #33	TMEM187 (ENSFCAG00000011388)	IRAK1 (ENSFCAG00000010847) #34	MECP2 (ENSFCAG00000011389) #37	OPN1LW (ENSFCAG00000011390)	TEX28 (ENSFCAG00000044525)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.a #22
Hedgehog	MODERN SPECIES	589																ENSEEUG00000000825 #22
Atlantogenata	ANCESTRAL SPECIES	70	ENSGT00940000162887 #12	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT00940000154411.`b.i.f	ENSGT01100000263534.b.k.a.b.b	ENSGT01100000263507.D.a.a.b.a	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000166196	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37
Afrotheria	ANCESTRAL SPECIES	82				ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000166196	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37
Afrotheria_a	ANCESTRAL SPECIES	81				ENSGT01030000234522.C.b.e.a.a.a.a.a.b #9	ENSGT00940000162887 #12	ENSGT00950000182890.D.c.b.a.a.a #10	ENSGT00390000012715.a	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000166196	ENSGT00940000161383 #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37
Elephant	MODERN SPECIES	50				ENSLAFG00000027476	ENSLAFG00000026228 #9	ENSLAFG00000022395 #10	TREX2 (ENSLAFG00000025805)	BGN (ENSLAFG00000002207) #14	ATP2B3 (ENSLAFG00000002208) #15	CCNQ (ENSLAFG00000029369) #16	HAUS7 (ENSLAFG00000005743) #13	DUSP9 (ENSLAFG00000031085) #17	PNCK (ENSLAFG00000013695) #19	ENSLAFG00000012168 #20	BCAP31 (ENSLAFG00000022717) #21	ABCD1 (ENSLAFG00000027794) #22	PLXNB3 (ENSLAFG00000002638) #23	SRPK3 (ENSLAFG00000006899) #24	IDH3G (ENSLAFG00000006904) #25	SSR4 (ENSLAFG00000006908) #26	PDZD4 (ENSLAFG00000025865) #27	L1CAM (ENSLAFG00000021925) #28	AVPR2 (ENSLAFG00000027738) #29	ARHGAP4 (ENSLAFG00000014809) #30	NAA10 (ENSLAFG00000007025) #31	RENBP (ENSLAFG00000007027) #32	ENSLAFG00000028984	HCFC1 (ENSLAFG00000004418) #33	TMEM187 (ENSLAFG00000003455)	IRAK1 (ENSLAFG00000016212) #34	MECP2 (ENSLAFG00000016292) #37
Hyrax	MODERN SPECIES	6423															BCAP31 (ENSPCAG00000008610) #21	ABCD1 (ENSPCAG00000008648) #22	PLXNB3 (ENSPCAG00000008708) #23	SRPK3 (ENSPCAG00000008882) #24	IDH3G (ENSPCAG00000008973) #25	SSR4 (ENSPCAG00000009037) #26	PDZD4 (ENSPCAG00000009079) #27
Xenarthra	ANCESTRAL SPECIES	442													ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29
Armadillo	MODERN SPECIES	1438													PNCK (ENSDNOG00000032763) #19	ENSDNOG00000034957 #20	BCAP31 (ENSDNOG00000042487) #21	ABCD1 (ENSDNOG00000006107) #22	PLXNB3 (ENSDNOG00000043717) #23	SRPK3 (ENSDNOG00000046508) #24	IDH3G (ENSDNOG00000001176) #25	SSR4 (ENSDNOG00000025714) #26	PDZD4 (ENSDNOG00000034883) #27	L1CAM (ENSDNOG00000047606) #28	AVPR2 (ENSDNOG00000043252) #29
Marsupialia	ANCESTRAL SPECIES	40	ENSGT00940000164372	ENSGT00940000164592	ENSGT01060000248564.b.a.b.b	ENSGT00390000003937.c.b #13	ENSGT00390000012715.a	ENSGT00390000003937.c.a #13	ENSGT00950000183104.B.a.b.c.a.a.b	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c.b #21	ENSGT00390000011863.c.a.a #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.b ##25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00390000016224.j.a	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383.e #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37
Marsupialia_b	ANCESTRAL SPECIES	37		ENSGT00940000164372	ENSGT00940000164592	ENSGT01060000248564.b.a.b.b	ENSGT00390000003937.c.b #13	ENSGT00390000012715.a	ENSGT00390000003937.c.a #13	ENSGT00950000183104.B.a.b.c.a.a.b	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c.b #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.b ##25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00390000016224.j.a	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383.e #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b.g #37
Diprotodontia	ANCESTRAL SPECIES	81		ENSGT00940000164372	ENSGT00940000164592	ENSGT01060000248564.b.a.b.b	ENSGT00390000003937.c.b #13	ENSGT00390000012715.a	ENSGT00390000003937.c.a #13	ENSGT00950000183104.B.a.b.c.a.a.b	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c.b #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.b ##25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00390000016224.j.a	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383.e #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b.g #37
Diprotodontia_a	ANCESTRAL SPECIES	79		ENSGT00940000164372	ENSGT00940000164592	ENSGT01060000248564.b.a.b.b	ENSGT00390000003937.c.b #13	ENSGT00390000012715.a	ENSGT00390000003937.c.a.a #13	ENSGT00950000183104.B.a.b.c.a.a.b	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c.b #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a.g.b ##25	ENSGT00390000008992.a #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000182824.a.b.b #30	ENSGT00390000016224.j.a	ENSGT00550000074803 #31	ENSGT00390000013740 #32	ENSGT00940000161383.e #33	ENSGT00390000011272	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b.g #37
Common wonbat	MODERN SPECIES	1157											ATP2B3 (ENSVURG00010020897) #15	DUSP9 (ENSVURG00010020940) #17	PNCK (ENSVURG00010020947) #19	ENSVURG00010020979 #20	BCAP31 (ENSVURG00010020986) #21	ABCD1 (ENSVURG00010021008) #22	PLXNB3 (ENSVURG00010021147) #23	SRPK3 (ENSVURG00010021162) #24	ENSVURG00010021172 ##25	ENSVURG00010021186 #26	PDZD4 (ENSVURG00010021202) #27	L1CAM (ENSVURG00010021232) #28	AVPR2 (ENSVURG00010021274) #29	ARHGAP4 (ENSVURG00010021281) #30	ENSVURG00010021294	NAA10 (ENSVURG00010021302) #31	RENBP (ENSVURG00010021310) #32	ENSVURG00010021324 #33	TMEM187 (ENSVURG00010021342)	IRAK1 (ENSVURG00010021347) #34	ENSVURG00010021357 #37
koala	MODERN SPECIES	310	ENSPCIG00000011061	ENSPCIG00000034875	ENSPCIG00000000101	ENSPCIG00000000183	ENSPCIG00000034352 #13	TREX2 (ENSPCIG00000009700)	ENSPCIG00000033247 #13	ENSPCIG00000010240	ENSPCIG00000001499	BGN (ENSPCIG00000016827) #14	ATP2B3 (ENSPCIG00000008574) #15	DUSP9 (ENSPCIG00000017701) #17	ENSPCIG00000017699 #19	ENSPCIG00000017698 #20	BCAP31 (ENSPCIG00000017694) #21	ABCD1 (ENSPCIG00000017689) #22	PLXNB3 (ENSPCIG00000016447) #23	SRPK3 (ENSPCIG00000016407) #24	ENSPCIG00000016406 ##25	ENSPCIG00000016404 #26	PDZD4 (ENSPCIG00000016403) #27	L1CAM (ENSPCIG00000003277) #28	AVPR2 (ENSPCIG00000012251) #29	ARHGAP4 (ENSPCIG00000012250) #30	ENSPCIG00000037377	NAA10 (ENSPCIG00000035783) #31	RENBP (ENSPCIG00000016399) #32	HCFC1 (ENSPCIG00000016397) #33	TMEM187 (ENSPCIG00000016396)	IRAK1 (ENSPCIG00000016394) #34	MECP2 (ENSPCIG00000016390) #37
Wallaby	MODERN SPECIES	1162																ABCD1 (ENSMEUG00000015195) #22
Tasmanian devil	MODERN SPECIES	21	ENSSHAG00000005765	ENSSHAG00000001308	ENSSHAG00000002527	ENSSHAG00000021923	ENSSHAG00000021553 #13	ENSSHAG00000028821	ENSSHAG00000025093 #13	ENSSHAG00000021114	ENSSHAG00000001909	BGN (ENSSHAG00000030752) #14	ATP2B3 (ENSSHAG00000005720) #15	DUSP9 (ENSSHAG00000007865) #17	PNCK (ENSSHAG00000008570) #19	ENSSHAG00000009030 #20	ENSSHAG00000009111 #21	ENSSHAG00000009362 #22	PLXNB3 (ENSSHAG00000009796) #23	SRPK3 (ENSSHAG00000000037) #24	ENSSHAG00000001102 ##25	SSR4 (ENSSHAG00000021208) #26	PDZD4 (ENSSHAG00000000157) #27	L1CAM (ENSSHAG00000003280) #28	AVPR2 (ENSSHAG00000004862) #29	ENSSHAG00000005769	ARHGAP4 (ENSSHAG00000004979) #30	NAA10 (ENSSHAG00000005952) #31	RENBP (ENSSHAG00000006063) #32	ENSSHAG00000006391 #33	TMEM187 (ENSSHAG00000021524)	IRAK1 (ENSSHAG00000007531) #34	MECP2 (ENSSHAG00000007851) #37
Opossum	MODERN SPECIES	627	ENSMODG00000012459	ENSMODG00000012465	ENSMODG00000012494	ENSMODG00000007462	ENSMODG00000022849	ENSMODG00000029017 #13	ENSMODG00000050925	ENSMODG00000007539 #13	ENSMODG00000022847	ENSMODG00000008043	ATP2B3 (ENSMODG00000008152) #15	DUSP9 (ENSMODG00000008174) #17	PNCK (ENSMODG00000008192) #19	ENSMODG00000008271 #20	BCAP31 (ENSMODG00000008300) #21	ABCD1 (ENSMODG00000008330) #22	PLXNB3 (ENSMODG00000008407) #23	SRPK3 (ENSMODG00000039232) #24	ENSMODG00000008568 ##25	SSR4 (ENSMODG00000008581) #26	PDZD4 (ENSMODG00000008596) #27	L1CAM (ENSMODG00000008677) #28	ENSMODG00000002236	ENSMODG00000047866	DNAAF6 (ENSMODG00000002249)	ENSMODG00000002278	ENSMODG00000050281	ENSMODG00000022844	CLDN2 (ENSMODG00000002246)	TBC1D8B (ENSMODG00000002345)	RNF128 (ENSMODG00000002362)
Platypus	MODERN SPECIES	17	GNL3L (ENSOANG00000000700)	ENSOANG00000000695	ENSOANG00000020339	PFKFB1 (ENSOANG00000000691)	APEX2 (ENSOANG00000040218)	ALAS2 (ENSOANG00000000687)	TREX2 (ENSOANG00000000686)	ENSOANG00000029619	BGN (ENSOANG00000000684) #14	ATP2B3 (ENSOANG00000000679) #15	CCNQ (ENSOANG00000000678) #16	DUSP9 (ENSOANG00000005316) #17	PNCK (ENSOANG00000036709) #19	ENSOANG00000010213 #20	BCAP31 (ENSOANG00000010212) #21	ABCD1 (ENSOANG00000041560) #22	PLXNB3 (ENSOANG00000005185) #23	SRPK3 (ENSOANG00000005184) #24	IDH3G (ENSOANG00000005183) #25	SSR4 (ENSOANG00000036977) #26	PDZD4 (ENSOANG00000005181) #27	L1CAM (ENSOANG00000009415) #28	AVPR2 (ENSOANG00000005890) #29	ENSOANG00000005889	ARHGAP4 (ENSOANG00000005180) #30	NAA10 (ENSOANG00000002893) #31	RENBP (ENSOANG00000002892) #32	ENSOANG00000041748	HCFC1 (ENSOANG00000005871) #33	TMEM187 (ENSOANG00000016003)	IRAK1 (ENSOANG00000011027) #34
Sauria	ANCESTRAL SPECIES	13	ENSGT00940000154861	ENSGT00940000157717	ENSGT01030000234648.a.a.d	ENSGT00940000158813	ENSGT00440000038003	ENSGT00940000163873.l	ENSGT00940000163873.k	ENSGT00390000003937 #13	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000008992 #26	ENSGT00950000183062.a.b #27	ENSGT00940000157506 #28	ENSGT01050000244882.b.c.b #29	ENSGT00950000183006.A.a.b	ENSGT00950000183006.B.f.b.b	ENSGT01050000244882.a.a.b ##29	ENSGT00390000011230	ENSGT00950000182824.a.b.a ##30	ENSGT00530000063557.a	ENSGT00390000014353	ENSGT00940000159835
Archelosauria	ANCESTRAL SPECIES	69																ENSGT00950000182955.a.b.a #22	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000008992 #26	ENSGT00940000157506 #28	ENSGT00950000183062.a.b #27	ENSGT00940000154471.a.a	ENSGT01060000248768	ENSGT00940000161969	ENSGT01030000234549.a.a.a.b	ENSGT01030000234549.a.a.a.a.a.a	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00390000011272	ENSGT00940000161383 #33	ENSGT00390000013740 #32
Cryptodira	ANCESTRAL SPECIES	136																ENSGT00950000182955.a.b.a #22	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000008992 #26	ENSGT00940000157506 #28
Testudinoidea	ANCESTRAL SPECIES	111																ENSGT00950000182955.a.b.a #22	ENSGT00940000157877.b.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000008992 #26	ENSGT00940000157506.c #28
Emydidae	ANCESTRAL SPECIES	220																ENSGT00950000182955.a.b.a #22	ENSGT00940000157877.b.b #24	ENSGT00950000182989.D.a.a #25
painted turtle	MODERN SPECIES	1100	ENSCPBG00000017165	ENSCPBG00000017169	ENSCPBG00000017177	ENSCPBG00000017179	FAM3A (ENSCPBG00000017182)	UBL4A (ENSCPBG00000017185)	ENSCPBG00000017187	ENSCPBG00000017191	ENSCPBG00000017205	G6PD (ENSCPBG00000017207)	IKBKG (ENSCPBG00000017209)	SEPHS2 (ENSCPBG00000017210)	ENSCPBG00000017211	ENSCPBG00000017213 #20	ENSCPBG00000017215	ENSCPBG00000017216 #22	ENSCPBG00000017217 #24	ENSCPBG00000017218 #24	IDH3G (ENSCPBG00000017224) #25	L1CAM (ENSCPBG00000017650) #28
Testudinidae	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.a #22
Abingdon island giant tortoise	MODERN SPECIES	660																ABCD1 (ENSCABG00000000571) #22	ENSCABG00000000527	ENSCABG00000000519 #24	ENSCABG00000000481 #24
Lepidosauria	ANCESTRAL SPECIES	38	ENSGT00950000183006.A.a.b	ENSGT01050000244882.b.c.b #29	ENSGT00940000157506 #28	ENSGT00950000183062.a.b #27	ENSGT00390000008992 #26	ENSGT00940000153588.b	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000003897.t	ENSGT00950000182846.a.a.a.a.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621	ENSGT00940000156650	ENSGT00950000182994.B.a.a.a	ENSGT00390000004735.C	ENSGT01050000244850.A.a	ENSGT00410000025802	ENSGT00730000111022.m	ENSGT00950000182808.b.b	ENSGT00950000183004.a.a.a.b
Episquamata	ANCESTRAL SPECIES	23	ENSGT00940000162980	ENSGT00940000157847	ENSGT00530000063168.a.a.b	ENSGT00950000183062.a.b #27	ENSGT00390000008992 #26	ENSGT00940000153588.b	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000003897.t	ENSGT00950000182846.a.a.a.a.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621	ENSGT00940000156650	ENSGT00950000182994.B.a.a.a	ENSGT00390000004735.C	ENSGT01050000244850.A.a	ENSGT00410000025802	ENSGT00730000111022.m	ENSGT00950000182808.b.b	ENSGT00950000183004.a.a.a.b
Laterata	ANCESTRAL SPECIES	7	ENSGT00950000183006.A.a.b	ENSGT01050000244882.b.c.b #29	ENSGT00940000157506 #28	ENSGT00950000183062.a.b #27	ENSGT00390000008992 #26	ENSGT00940000153588.b	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000003897.t	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621	ENSGT00940000156650	ENSGT00950000182994.B.a.a.a	ENSGT00390000004735.C	ENSGT01050000244850.A.a	ENSGT00410000025802	ENSGT00730000111022.m	ENSGT00950000182808.b.b	ENSGT00950000183004.a.a.a.b	ENSGT00940000164196
Common wall lizard	MODERN SPECIES	8	ENSPMRG00000021296	ENSPMRG00000021287	L1CAM (ENSPMRG00000021230) #28	PDZD4 (ENSPMRG00000021208) #27	SSR4 (ENSPMRG00000021193) #26	ENSPMRG00000021190	FLNA (ENSPMRG00000021086)	HAUS7 (ENSPMRG00000021057) #13	BGN (ENSPMRG00000021052) #14	ATP2B3 (ENSPMRG00000023951) #15	CCNQ (ENSPMRG00000023950) #16	DUSP9 (ENSPMRG00000023948) #17	PNCK (ENSPMRG00000023947) #19	ENSPMRG00000023946 #20	BCAP31 (ENSPMRG00000023945) #21	ABCD1 (ENSPMRG00000023944) #22	PLXNB3 (ENSPMRG00000023943) #23	SRPK3 (ENSPMRG00000023942) #24	IDH3G (ENSPMRG00000023941) #25	ENSPMRG00000023939	DNASE1L1 (ENSPMRG00000023938)	TAFAZZIN (ENSPMRG00000023937)	ATP6AP1 (ENSPMRG00000023936)	GDI1 (ENSPMRG00000023935)	ENSPMRG00000023934	PLXNA3 (ENSPMRG00000023922)	ENSPMRG00000023892	ENSPMRG00000023891	ENSPMRG00000023889	ENSPMRG00000023888	SLC10A3 (ENSPMRG00000023887)
Argentine black and white tegu	MODERN SPECIES	12	CAV3 (ENSSMRG00000002372)	ENSSMRG00000002373	AVPR2 (ENSSMRG00000002377) #29	L1CAM (ENSSMRG00000002421) #28	PDZD4 (ENSSMRG00000002457) #27	FLNA (ENSSMRG00000002470)	HAUS7 (ENSSMRG00000002500) #13	ENSSMRG00000002504	BGN (ENSSMRG00000002508) #14	ATP2B3 (ENSSMRG00000002530) #15	CCNQ (ENSSMRG00000002583) #16	DUSP9 (ENSSMRG00000002591) #17	PNCK (ENSSMRG00000002638) #19	ENSSMRG00000002650 #20	BCAP31 (ENSSMRG00000002653) #21	ABCD1 (ENSSMRG00000002654) #22	PLXNB3 (ENSSMRG00000002754) #23	SRPK3 (ENSSMRG00000002758) #24	IDH3G (ENSSMRG00000002761) #25	ENSSMRG00000002764	DNASE1L1 (ENSSMRG00000002768)	TAFAZZIN (ENSSMRG00000002769)	ATP6AP1 (ENSSMRG00000002776)	GDI1 (ENSSMRG00000002779)	ENSSMRG00000002783	PLXNA3 (ENSSMRG00000002851)	ENSSMRG00000002873	UBL4A (ENSSMRG00000002875)	SLC10A3 (ENSSMRG00000002876)	FAM3A (ENSSMRG00000002877)	ENSSMRG00000002878
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00950000183006.A.a.b	ENSGT01050000244882.b.c.b #29	ENSGT00940000157506 #28	ENSGT00950000183062.a.b #27	ENSGT00390000008992 #26	ENSGT00940000153588.b	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000003897.t	ENSGT00950000182846.a.a.a.a.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621	ENSGT00940000156650	ENSGT00950000182994.B.a.a.a	ENSGT00390000004735.C	ENSGT01050000244850.A.a	ENSGT00410000025802	ENSGT00730000111022.m	ENSGT00950000182808.b.b	ENSGT00950000183004.a.a.a.b
Elapidae	ANCESTRAL SPECIES	21	ENSGT00950000183006.A.a.b	ENSGT01050000244882.b.c.b #29	ENSGT00940000157506.a #28	ENSGT00950000183062.a.b #27	ENSGT00390000008992 #26	ENSGT00940000153588.b	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000003897.t	ENSGT00950000182846.a.a.a.a.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621	ENSGT00940000156650	ENSGT00950000182994.B.a.a.a	ENSGT00390000004735.C	ENSGT01050000244850.A.a	ENSGT00410000025802	ENSGT00730000111022.m	ENSGT00950000182808.b.b	ENSGT00950000183004.a.a.a.b
Elapidae_a	DUPLICATION
Elapidae_a	ANCESTRAL SPECIES	23	ENSGT00940000157506.a #28	ENSGT00940000157506.b #28	ENSGT00950000183062.a.b #27	ENSGT00390000008992 #26	ENSGT00940000153588.b	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a.f #22	ENSGT00950000182955.a.b.a.e #22	ENSGT01020000230394.e.a.a.b.a.b.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000003897.t	ENSGT00950000182846.a.a.a.a.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621	ENSGT00940000156650	ENSGT00950000182994.B.a.a.a	ENSGT00390000004735.C	ENSGT01050000244850.A.a	ENSGT00410000025802	ENSGT00730000111022.m	ENSGT00950000182808.b.b	ENSGT00950000183004.a.a.a.b
Acanthophiinae	ANCESTRAL SPECIES	23	ENSGT01050000244882.b.c.b #29	ENSGT00940000157506.a #28	ENSGT00950000183062.a.b #27	ENSGT00390000008992 #26	ENSGT00940000153588.b	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a.f #22	ENSGT00950000182955.a.b.a.e #22	ENSGT01020000230394.e.a.a.b.a.b.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000003897.t	ENSGT00950000182846.a.a.a.a.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621	ENSGT00940000156650	ENSGT00950000182994.B.a.a.a	ENSGT00390000004735.C	ENSGT01050000244850.A.a	ENSGT00410000025802	ENSGT00730000111022.m	ENSGT00950000182808.b.b	ENSGT00950000183004.a.a.a.b
Eastern brown snake	MODERN SPECIES	52	ENSPTXG00000004997	AVPR2 (ENSPTXG00000004998) #29	L1CAM (ENSPTXG00000004999) #28	PDZD4 (ENSPTXG00000005007) #27	SSR4 (ENSPTXG00000005008) #26	FLNA (ENSPTXG00000005011)	HAUS7 (ENSPTXG00000005012) #13	BGN (ENSPTXG00000005013) #14	ATP2B3 (ENSPTXG00000005014) #15	CCNQ (ENSPTXG00000005700) #16	DUSP9 (ENSPTXG00000005701) #17	PNCK (ENSPTXG00000005709) #19	ENSPTXG00000005710 #20	BCAP31 (ENSPTXG00000005711) #21	ENSPTXG00000005712 #22	ENSPTXG00000005713 #22	PLXNB3 (ENSPTXG00000005731) #23	SRPK3 (ENSPTXG00000007997) #24	IDH3G (ENSPTXG00000007998) #25	ENSPTXG00000007999	ENSPTXG00000006589	DNASE1L1 (ENSPTXG00000006590)	TAFAZZIN (ENSPTXG00000006591)	ATP6AP1 (ENSPTXG00000006592)	GDI1 (ENSPTXG00000006593)	ENSPTXG00000006594	PLXNA3 (ENSPTXG00000006595)	ENSPTXG00000006706	UBL4A (ENSPTXG00000006707)	SLC10A3 (ENSPTXG00000006709)	FAM3A (ENSPTXG00000006710)
Mainland tiger snake	MODERN SPECIES	81	L1CAM (ENSNSUG00000015009) #28	PDZD4 (ENSNSUG00000015010) #27	SSR4 (ENSNSUG00000015011) #26	FLNA (ENSNSUG00000015014)	HAUS7 (ENSNSUG00000015675) #13	ENSNSUG00000015676	BGN (ENSNSUG00000015677) #14	ATP2B3 (ENSNSUG00000015687) #15	CCNQ (ENSNSUG00000015690) #16	DUSP9 (ENSNSUG00000015691) #17	PNCK (ENSNSUG00000015692) #19	ENSNSUG00000015693 #20	ENSNSUG00000015694 #20	BCAP31 (ENSNSUG00000015695) #21	ENSNSUG00000015696 #22	ENSNSUG00000015697 #22	ENSNSUG00000015698 #23	ENSNSUG00000015699 #23	SRPK3 (ENSNSUG00000015700) #24	IDH3G (ENSNSUG00000015701) #25	ENSNSUG00000015702	ENSNSUG00000015704	DNASE1L1 (ENSNSUG00000015705)	TAFAZZIN (ENSNSUG00000015706)	ATP6AP1 (ENSNSUG00000015714)	GDI1 (ENSNSUG00000015732)	ENSNSUG00000015733	ENSNSUG00000015735	ENSNSUG00000015736	ENSNSUG00000015737	UBL4A (ENSNSUG00000015738)
Blue-lipped sea krait	MODERN SPECIES	6642																ENSLLTG00000014464 #22
Elapidae_a	ANCESTRAL SPECIES	23	ENSGT01050000244882.b.c.b #29	ENSGT00940000157506.a #28	ENSGT00940000157506.b #28	ENSGT00950000183062.a.b #27	ENSGT00390000008992 #26	ENSGT00940000153588.b	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a.f #22	ENSGT00950000182955.a.b.a.e #22	ENSGT01020000230394.e.a.a.b.a.b.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000003897.t	ENSGT00950000182846.a.a.a.a.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621	ENSGT00940000156650	ENSGT00950000182994.B.a.a.a	ENSGT00390000004735.C	ENSGT01050000244850.A.a	ENSGT00410000025802	ENSGT00730000111022.m	ENSGT00950000182808.b.b
Acanthophiinae	ANCESTRAL SPECIES	23	ENSGT00950000183006.A.a.b	ENSGT01050000244882.b.c.b #29	ENSGT00940000157506.a #28	ENSGT00950000183062.a.b #27	ENSGT00390000008992 #26	ENSGT00940000153588.b	ENSGT00390000003937 #13	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a.f #22	ENSGT00950000182955.a.b.a.e #22	ENSGT01020000230394.e.a.a.b.a.b.b #23	ENSGT00940000157877.b #24	ENSGT00950000182989.D.a.a #25	ENSGT00390000003897.t	ENSGT00950000182846.a.a.a.a.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621	ENSGT00940000156650	ENSGT00950000182994.B.a.a.a	ENSGT00390000004735.C	ENSGT01050000244850.A.a	ENSGT00410000025802	ENSGT00730000111022.m	ENSGT00950000182808.b.b
Mainland tiger snake	MODERN SPECIES	81	AVPR2 (ENSNSUG00000015007) #29	L1CAM (ENSNSUG00000015009) #28	PDZD4 (ENSNSUG00000015010) #27	SSR4 (ENSNSUG00000015011) #26	FLNA (ENSNSUG00000015014)	HAUS7 (ENSNSUG00000015675) #13	ENSNSUG00000015676	BGN (ENSNSUG00000015677) #14	ATP2B3 (ENSNSUG00000015687) #15	CCNQ (ENSNSUG00000015690) #16	DUSP9 (ENSNSUG00000015691) #17	PNCK (ENSNSUG00000015692) #19	ENSNSUG00000015693 #20	ENSNSUG00000015694 #20	BCAP31 (ENSNSUG00000015695) #21	ENSNSUG00000015696 #22	ENSNSUG00000015697 #22	ENSNSUG00000015698 #23	ENSNSUG00000015699 #23	SRPK3 (ENSNSUG00000015700) #24	IDH3G (ENSNSUG00000015701) #25	ENSNSUG00000015702	ENSNSUG00000015704	DNASE1L1 (ENSNSUG00000015705)	TAFAZZIN (ENSNSUG00000015706)	ATP6AP1 (ENSNSUG00000015714)	GDI1 (ENSNSUG00000015732)	ENSNSUG00000015733	ENSNSUG00000015735	ENSNSUG00000015736	ENSNSUG00000015737
Eastern brown snake	MODERN SPECIES	52	CAV3 (ENSPTXG00000004995)	ENSPTXG00000004997	AVPR2 (ENSPTXG00000004998) #29	L1CAM (ENSPTXG00000004999) #28	PDZD4 (ENSPTXG00000005007) #27	SSR4 (ENSPTXG00000005008) #26	FLNA (ENSPTXG00000005011)	HAUS7 (ENSPTXG00000005012) #13	BGN (ENSPTXG00000005013) #14	ATP2B3 (ENSPTXG00000005014) #15	CCNQ (ENSPTXG00000005700) #16	DUSP9 (ENSPTXG00000005701) #17	PNCK (ENSPTXG00000005709) #19	ENSPTXG00000005710 #20	BCAP31 (ENSPTXG00000005711) #21	ENSPTXG00000005712 #22	ENSPTXG00000005713 #22	PLXNB3 (ENSPTXG00000005731) #23	SRPK3 (ENSPTXG00000007997) #24	IDH3G (ENSPTXG00000007998) #25	ENSPTXG00000007999	ENSPTXG00000006589	DNASE1L1 (ENSPTXG00000006590)	TAFAZZIN (ENSPTXG00000006591)	ATP6AP1 (ENSPTXG00000006592)	GDI1 (ENSPTXG00000006593)	ENSPTXG00000006594	PLXNA3 (ENSPTXG00000006595)	ENSPTXG00000006706	UBL4A (ENSPTXG00000006707)	SLC10A3 (ENSPTXG00000006709)
Blue-lipped sea krait	MODERN SPECIES	5679																ENSLLTG00000010037 #22
Indian cobra	MODERN SPECIES	1	L1CAM (ENSNNAG00000018628) #28	ENSNNAG00000018620 #27	ENSNNAG00000018618	ENSNNAG00000018610 #27	SSR4 (ENSNNAG00000018601) #26	ENSNNAG00000018599	FLNA (ENSNNAG00000010196)	HAUS7 (ENSNNAG00000008940) #13	BGN (ENSNNAG00000008914) #14	ATP2B3 (ENSNNAG00000007314) #15	CCNQ (ENSNNAG00000007203) #16	DUSP9 (ENSNNAG00000007195) #17	PNCK (ENSNNAG00000007117) #19	ENSNNAG00000004889 #20	BCAP31 (ENSNNAG00000004742) #21	ABCD1 (ENSNNAG00000004643) #22	ENSNNAG00000004620 #23	ENSNNAG00000004602	ENSNNAG00000018745	ENSNNAG00000018733 #23	ENSNNAG00000018721 #24	IDH3G (ENSNNAG00000018712) #25	ENSNNAG00000018704	DNASE1L1 (ENSNNAG00000018696)	TAFAZZIN (ENSNNAG00000018691)	ATP6AP1 (ENSNNAG00000018685)	GDI1 (ENSNNAG00000018677)	ENSNNAG00000018671	ENSNNAG00000018668	ENSNNAG00000018666	ENSNNAG00000018664
Lizard	MODERN SPECIES	1	L1CAM (ENSACAG00000011487) #28	ENSACAG00000040437	PDZD4 (ENSACAG00000036143) #27	SSR4 (ENSACAG00000011328) #26	ENSACAG00000009800	HAUS7 (ENSACAG00000009779) #13	BGN (ENSACAG00000009615) #14	ATP2B3 (ENSACAG00000009210) #15	CCNQ (ENSACAG00000009190) #16	DUSP9 (ENSACAG00000009178) #17	ENSACAG00000044476	PNCK (ENSACAG00000008973) #19	ENSACAG00000008691 #20	ENSACAG00000045378	BCAP31 (ENSACAG00000008629) #21	ABCD1 (ENSACAG00000008539) #22	ENSACAG00000029519	PLXNB3 (ENSACAG00000008378) #23	SRPK3 (ENSACAG00000008280) #24	IDH3G (ENSACAG00000008220) #25	ENSACAG00000008192	ENSACAG00000026130	ENSACAG00000008098	ENSACAG00000007871	ENSACAG00000007823	ENSACAG00000007813	ENSACAG00000037716	MAB21L3 (ENSACAG00000003399)	SLC22A15 (ENSACAG00000003327)	ENSACAG00000003304	CASQ2 (ENSACAG00000003187)
Anura	ANCESTRAL SPECIES	249							ENSGT00950000182846.a.b	ENSGT00940000164248	ENSGT00940000155311.C #14	ENSGT00940000160765 #15	ENSGT00940000155445 #16	ENSGT00940000161880 #17	ENSGT00940000162187 #19	ENSGT00940000155869 #20	ENSGT00390000011863.c #21	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23
Leishan spiny toad	MODERN SPECIES	12	APEX2 (ENSLLEG00000015467)	PFKFB1 (ENSLLEG00000015025)	ENSLLEG00000014898	ENSLLEG00000014743	ENSLLEG00000014665	ENSLLEG00000014514	BGN (ENSLLEG00000014316) #14	ENSLLEG00000014240	ATP2B3 (ENSLLEG00000030285) #15	CCNQ (ENSLLEG00000030219) #16	DUSP9 (ENSLLEG00000030195) #17	ENSLLEG00000030187	PNCK (ENSLLEG00000030165) #19	ENSLLEG00000030075 #20	BCAP31 (ENSLLEG00000029981) #21	ABCD1 (ENSLLEG00000029377) #22	PLXNB3 (ENSLLEG00000028671) #23	ST6GALNAC4 (ENSLLEG00000028566)	ENSLLEG00000028550	PHF8 (ENSLLEG00000028501)	ENSLLEG00000028484	FAM120C (ENSLLEG00000028450)	WNK3 (ENSLLEG00000028345)	TSR2 (ENSLLEG00000028315)	SRPK3 (ENSLLEG00000028215) #24	IDH3G (ENSLLEG00000027844) #25	SSR4 (ENSLLEG00000027741) #26	PDZD4 (ENSLLEG00000027705) #27	ENSLLEG00000027672	L1CAM (ENSLLEG00000026877) #28	AVPR2 (ENSLLEG00000026789) #29
Frog	MODERN SPECIES	8	phyhd1 (ENSXETG00000012919)	lrrc8a (ENSXETG00000012899)	kyat1 (ENSXETG00000012909)	golga2 (ENSXETG00000012915)	dnase1 (ENSXETG00000012928)	ENSXETG00000046713	ecm2.2 (ENSXETG00000012932)	bgn (ENSXETG00000012934) #14	atp2b3 (ENSXETG00000030920) #15	ccnq (ENSXETG00000007696) #16	idh3b (ENSXETG00000007698) #17	gnl3l (ENSXETG00000007700)	pnck (ENSXETG00000007699) #19	slc6a8 (ENSXETG00000007703) #20	bcap31 (ENSXETG00000024749) #21	abcd1 (ENSXETG00000007705) #22	plxnb3 (ENSXETG00000007706) #23	smc1a (ENSXETG00000024747)	wnt7c (ENSXETG00000007719)	syp (ENSXETG00000007721)	prickle3 (ENSXETG00000030869)	plp2 (ENSXETG00000043070)	gpkow (ENSXETG00000007727)	naif1 (ENSXETG00000007730)	slc25a25 (ENSXETG00000007731)	col27a1 (ENSXETG00000021972)	dpm2 (ENSXETG00000024744)	pip5kl1 (ENSXETG00000021994)	st6galnac4 (ENSXETG00000021989)	st6galnac6 (ENSXETG00000021997)	ENSXETG00000048574
Coelacanth	MODERN SPECIES	2755																ABCD1 (ENSLACG00000001040) #22	ENSLACG00000005308 #23
Actinopterygii	ANCESTRAL SPECIES	295														ENSGT00940000157503	ENSGT00940000154102.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b #24	ENSGT00950000182994.B.a.a.a	ENSGT00390000018621	ENSGT00940000156650	ENSGT00950000182846.a.a.a.a.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000003897	ENSGT00940000153588.b	ENSGT00510000050141
Neopterygii	ANCESTRAL SPECIES	374												ENSGT00990000210258	ENSGT00940000159438	ENSGT00940000157503	ENSGT00940000154102.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24
Osteoglossocephalai	ANCESTRAL SPECIES	116	ENSGT00940000166169	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00600000085663	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00940000161383.d.b #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT00390000003348	ENSGT00940000159438	ENSGT00940000157503.i.a	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00940000155317.a.a	ENSGT00390000002062	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000160485	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b	ENSGT00940000161689	ENSGT00950000182827.B
Osteoglossiformes	ANCESTRAL SPECIES	147	ENSGT00600000085663	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00940000161383.d.b #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT00390000003348	ENSGT00940000159438	ENSGT00940000157503.i.a	ENSGT00940000158685	ENSGT00940000155480.d.m	ENSGT00730000111044	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00940000155317.a.a	ENSGT00390000002062	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000160485	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b	ENSGT00940000163427.c	ENSGT00950000182827.B
Asian bonytongue	MODERN SPECIES		ENSSFOG00015001171	HDAC6 (ENSSFOG00015001196)	ENSSFOG00015001334	cdk20 (ENSSFOG00015001339)	HCFC1 (ENSSFOG00015001349) #33	IRAK1 (ENSSFOG00015001632) #34	mecp2 (ENSSFOG00015029955) #37	ENSSFOG00015001848	FGD1 (ENSSFOG00015001880)	tfe3a (ENSSFOG00015001934)	zgc:113363 (ENSSFOG00015032088)	cxxc1a (ENSSFOG00015001940)	ENSSFOG00015001950	ENSSFOG00015026264	ENSSFOG00015030516	abcd1 (ENSSFOG00015001977) #22	PLXNB3 (ENSSFOG00015002059) #23	SRPK3 (ENSSFOG00015002090) #24	tsr2 (ENSSFOG00015002207)	CDK16 (ENSSFOG00015002239)	abt1 (ENSSFOG00015031363)	comta (ENSSFOG00015032003)	grm6a (ENSSFOG00015002324)	USP11 (ENSSFOG00015002379)	zgc:86609 (ENSSFOG00015002467)	uxt (ENSSFOG00015002509)	ENSSFOG00015002614	ENSSFOG00015002627	otud5a (ENSSFOG00015030449)	pim2 (ENSSFOG00015002649)	pim2 (ENSSFOG00015002666)
P. kingsleyae	MODERN SPECIES	301	pcsk1nl (ENSPKIG00000024117)	ENSPKIG00000024113	HDAC6 (ENSPKIG00000024072)	ENSPKIG00000024047	cdk20 (ENSPKIG00000024030)	ENSPKIG00000024006 #33	ENSPKIG00000023994 #34	mecp2 (ENSPKIG00000023979) #37	ENSPKIG00000023954	FGD1 (ENSPKIG00000023905)	tfe3a (ENSPKIG00000023885)	ENSPKIG00000023877	cxxc1a (ENSPKIG00000023833)	ENSPKIG00000023805	ENSPKIG00000023796	abcd1 (ENSPKIG00000023779) #22	PLXNB3 (ENSPKIG00000023729) #23	SRPK3 (ENSPKIG00000023691) #24	tsr2 (ENSPKIG00000023676)	CDK16 (ENSPKIG00000023637)	comta (ENSPKIG00000023566)	abt1 (ENSPKIG00000023588)	grm6a (ENSPKIG00000023528)	USP11 (ENSPKIG00000023476)	zgc:86609 (ENSPKIG00000023431)	uxt (ENSPKIG00000023407)	ENSPKIG00000023382
Clupeocephala	ANCESTRAL SPECIES	149	ENSGT00940000165528	ENSGT00940000157571	ENSGT00390000018078	ENSGT00390000005780.a	ENSGT00940000160485	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00390000002062	ENSGT00940000161383.d.b #33	ENSGT00940000159128	ENSGT00940000166313.b	ENSGT00940000159563	ENSGT00990000203541.b	ENSGT00600000085663	ENSGT00940000169444	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00940000155317.a.a	ENSGT01030000234648.a.b.a.b.a.b
Otomorpha	ANCESTRAL SPECIES	83	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00940000167532	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT00390000003348	ENSGT00940000159438	ENSGT00940000157503.i.a	ENSGT00730000111044	ENSGT00940000169444	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00940000155317.a.a	ENSGT01030000234648.a.b.a.b.a.b	ENSGT00940000158963.b.a	ENSGT00390000002062	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000160485	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b
Clupeiformes	ANCESTRAL SPECIES	80	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00940000167532	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b.v #37	ENSGT00390000003348	ENSGT00940000159438	ENSGT00940000157503.i.a	ENSGT00940000169444	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00390000002062	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000160485	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00390000011863.c #21
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	20						CDK20 (ENSDCDG00000029248)	hcfc1b (ENSDCDG00000029255)	ENSDCDG00000029479 #34	mecp2 (ENSDCDG00000029481) #37	ENSDCDG00000029482	FGD1 (ENSDCDG00000029484)	ENSDCDG00000029512	tfe3a (ENSDCDG00000029513)	mbd1a (ENSDCDG00000029515)	ENSDCDG00000029521	abcd1 (ENSDCDG00000029532) #22
Denticle herring	MODERN SPECIES	1	cacna1fb (ENSDCDG00000003632)	sypa (ENSDCDG00000007864)	ENSDCDG00000007895	HDAC6 (ENSDCDG00000008185)	ENSDCDG00000012998	cdk20 (ENSDCDG00000013012)	hcfc1b (ENSDCDG00000013119)	ENSDCDG00000013911 #34	mecp2 (ENSDCDG00000013979) #37	ENSDCDG00000014265	FGD1 (ENSDCDG00000014316)	ENSDCDG00000014841	tfe3a (ENSDCDG00000014843)	mbd1a (ENSDCDG00000014854)	ENSDCDG00000014860	abcd1 (ENSDCDG00000014869) #22	PLXNB3 (ENSDCDG00000015001) #23	SRPK3 (ENSDCDG00000020351) #24	tsr2 (ENSDCDG00000021609)	CDK16 (ENSDCDG00000021622)	comta (ENSDCDG00000023828)	abt1 (ENSDCDG00000023830)	grm6a (ENSDCDG00000023855)	USP11 (ENSDCDG00000026692)	zgc:86609 (ENSDCDG00000030234)	uxt (ENSDCDG00000030254)	ELK1 (ENSDCDG00000030257)	ENSDCDG00000030264	otud5a (ENSDCDG00000030287)	pim2 (ENSDCDG00000030420)	slc35a2 (ENSDCDG00000030422)
Atlantic herring	MODERN SPECIES	20	ENSCHAG00000023470	ENSCHAG00000023464	cacna1fb (ENSCHAG00000018435)	sypa (ENSCHAG00000018272)	plp2a (ENSCHAG00000018231)	ENSCHAG00000018208	ENSCHAG00000018192	ENSCHAG00000018158	HDAC6 (ENSCHAG00000016727)	ENSCHAG00000016693	cdk20 (ENSCHAG00000016474)	hcfc1b (ENSCHAG00000015879)	tfe3a (ENSCHAG00000015756)	FGD1 (ENSCHAG00000015518)	ENSCHAG00000015450	abcd1 (ENSCHAG00000014730) #22	PLXNB3 (ENSCHAG00000010819) #23	SRPK3 (ENSCHAG00000010403) #24	tsr2 (ENSCHAG00000010385)	CDK16 (ENSCHAG00000006163)	comta (ENSCHAG00000006027)	abt1 (ENSCHAG00000006011)	grm6a (ENSCHAG00000003869)	USP11 (ENSCHAG00000001346)	zgc:86609 (ENSCHAG00000000813)	uxt (ENSCHAG00000000675)	ENSCHAG00000000504	ENSCHAG00000000466	ENSCHAG00000000439	ENSCHAG00000000376	ENSCHAG00000000355
Otophysi	ANCESTRAL SPECIES	91													ENSGT00730000111044	ENSGT00940000169444	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00940000155317.a.a	ENSGT01030000234648.a.b.a.b.a.b	ENSGT00940000158963.b.a	ENSGT00390000006665.b.g	ENSGT00940000155056.b	ENSGT00940000163942.a	ENSGT00940000158374.d	ENSGT00940000166894	ENSGT00390000009278.a	ENSGT00940000154570.a.a	ENSGT00940000159410
Characiphysae	ANCESTRAL SPECIES	41	ENSGT01030000235233	ENSGT00600000085663	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00940000167532	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT00390000003348	ENSGT00940000159438	ENSGT00940000157503.i.a	ENSGT00730000111044	ENSGT00940000169444	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00940000155317.a.a	ENSGT00390000002062	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000160485	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b	ENSGT00940000161689	ENSGT00940000163427.c
Channel catfish	MODERN SPECIES	24	ENSIPUG00000013393	Hdac6 (ENSIPUG00000013277)	ENSIPUG00000013221	cdk20 (ENSIPUG00000013183)	hcfc1 (ENSIPUG00000013092)	irak1 (ENSIPUG00000013038) #34	mecp2 (ENSIPUG00000013019) #37	ENSIPUG00000013003	FGD1 (ENSIPUG00000012986)	tfe3a (ENSIPUG00000012922)	zgc:113363 (ENSIPUG00000012710)	ntpcr (ENSIPUG00000012672)	CXXC1 (ENSIPUG00000012610)	mbd1a (ENSIPUG00000012547)	CCDC120 (ENSIPUG00000012472)	ABCD1 (ENSIPUG00000012423) #22	PLXNB3 (ENSIPUG00000012302) #23	srpk3 (ENSIPUG00000012200) #24	tsr2 (ENSIPUG00000012170)	cdk16 (ENSIPUG00000012114)	comt (ENSIPUG00000012075)	comt (ENSIPUG00000012058)	abt1 (ENSIPUG00000012026)	grm6a (ENSIPUG00000011995)	usp11 (ENSIPUG00000011912)	zgc:86609 (ENSIPUG00000011878)	Uxt (ENSIPUG00000011857)	elk1 (ENSIPUG00000011841)	LRRN1 (ENSIPUG00000011826)	otud5 (ENSIPUG00000011788)	pim2 (ENSIPUG00000011752)
Characiphysae_b	ANCESTRAL SPECIES	134	ENSGT01030000235233	ENSGT00600000085663	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00940000167532	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT00390000003348	ENSGT00940000159438	ENSGT00940000157503.i.a	ENSGT00730000111044	ENSGT00940000169444	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00940000155317.a.a	ENSGT01030000234648.a.b.a.b.a.b	ENSGT00940000158963.b.a	ENSGT00390000002062	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000160485	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b
Characoidei	ANCESTRAL SPECIES	150	ENSGT00600000085663	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00940000167532	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT00390000003348	ENSGT00940000159438	ENSGT00940000157503.i.a	ENSGT00940000158685	ENSGT00730000111044	ENSGT00940000169444	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00390000002062	ENSGT01030000234648.a.b.a.b.a.a
Mexicana tetra	MODERN SPECIES	21												tfe3a (ENSAMXG00000038236)	zgc:113363 (ENSAMXG00000035901)	cxxc1a (ENSAMXG00000016944)	ENSAMXG00000016916	abcd1 (ENSAMXG00000040510) #22	PLXNB3 (ENSAMXG00000016869) #23	SRPK3 (ENSAMXG00000031741) #24	tsr2 (ENSAMXG00000016817)	CDK16 (ENSAMXG00000016796)	comta (ENSAMXG00000016773)	ENSAMXG00000017457	slc6a8 (ENSAMXG00000017442) #20	bcap31 (ENSAMXG00000017416) #21	slc35a2 (ENSAMXG00000017408)	pim2 (ENSAMXG00000032454)	otud5a (ENSAMXG00000038113)	ENSAMXG00000025140	ENSAMXG00000017384	uxt (ENSAMXG00000039548)	zgc:86609 (ENSAMXG00000040575)
Red-bellied piranha	MODERN SPECIES	358		ENSPNAG00000024874	ENSPNAG00000006252	ENSPNAG00000024820	cdk20 (ENSPNAG00000005669)	hcfc1b (ENSPNAG00000024755)	ENSPNAG00000024736 #34	mecp2 (ENSPNAG00000024721) #37	ENSPNAG00000024681	FGD1 (ENSPNAG00000005886)	tfe3a (ENSPNAG00000024609)	zgc:113363 (ENSPNAG00000005751)	cxxc1a (ENSPNAG00000006542)	mbd1a (ENSPNAG00000024566)	ENSPNAG00000003831	abcd1 (ENSPNAG00000024508) #22	PLXNB3 (ENSPNAG00000024448) #23	SRPK3 (ENSPNAG00000004866) #24	tsr2 (ENSPNAG00000024167)	CDK16 (ENSPNAG00000024144)	ENSPNAG00000024081	comta (ENSPNAG00000024067)	abt1 (ENSPNAG00000005087)
Electric eel	MODERN SPECIES	111	grip2a (ENSEEEG00000003094)	ssuh2rs1 (ENSEEEG00000003111)	ENSEEEG00000003112	ENSEEEG00000003118	ENSEEEG00000003556	cdk20 (ENSEEEG00000003560)	hcfc1b (ENSEEEG00000003562)	ENSEEEG00000003563 #34	mecp2 (ENSEEEG00000003570) #37	ENSEEEG00000003583	FGD1 (ENSEEEG00000003585)	tfe3a (ENSEEEG00000003588)	zgc:113363 (ENSEEEG00000003590)	cxxc1a (ENSEEEG00000003597)	ENSEEEG00000003704	abcd1 (ENSEEEG00000003708) #22	ENSEEEG00000003712 ##23	ENSEEEG00000003718
Cyprinoidei	ANCESTRAL SPECIES	23	ENSGT00530000063631.b.n.a	ENSGT00940000166313.a	ENSGT00940000166196	ENSGT00940000164702.b	ENSGT01030000234549.a.a.a.a.a.a	ENSGT01030000234549.a.a.a.b	ENSGT00940000155877	ENSGT00940000157503.i.b	ENSGT01060000253577	ENSGT00940000166392	ENSGT00950000183005.a.a	ENSGT00940000154102.b.a.a	ENSGT00730000111044	ENSGT00940000169444	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00940000155317.a.a	ENSGT01030000234648.a.b.a.b.a.b	ENSGT00940000158963.b.a	ENSGT00390000006665.b.g	ENSGT00940000155056.b	ENSGT00940000163942.a	ENSGT00940000158374.d	ENSGT00940000166894	ENSGT00390000009278.a	ENSGT00940000154570.a.a	ENSGT00940000159410
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	134	ENSGT01030000235233.b	ENSGT01030000235233.a.a.b	ENSGT00940000159563.a	ENSGT00940000166313.b.a	ENSGT00940000159128.b	ENSGT00940000167532.b	ENSGT00940000160502.j #34	ENSGT00530000063687.b.b.b.t #37	ENSGT00390000003348	ENSGT00940000159438.hb.b.a	ENSGT00940000157503.i.a.d	ENSGT00940000158685.t.b	ENSGT00730000111044.s	ENSGT00940000169444	ENSGT00940000154102.b.a.b.e	ENSGT00950000182955.a.b.a.i #22	ENSGT01020000230394.e.a.a.b.a.b.d #23	ENSGT00940000157877.b.g.b #24	ENSGT00390000012692.o	ENSGT00940000156963.a.b.b	ENSGT00940000155317.a.a.i.a	ENSGT01030000234648.a.b.a.b.a.a.a	ENSGT00940000160485.u	ENSGT00390000005780.a.b	ENSGT00390000018078.q	ENSGT00940000157571.a.a	ENSGT00940000165528.d	ENSGT00940000158963.b.b.b	ENSGT00940000163427.c.ab.b	ENSGT00940000175166	ENSGT00950000182827.B.c
Cyprininae_a	ANCESTRAL SPECIES	109	ENSGT01030000235233.a.a.a	ENSGT00600000085663	ENSGT00990000203541.b.a	ENSGT00940000159563.a	ENSGT00940000166313.b.a	ENSGT00940000159128.b	ENSGT00940000167532.b	ENSGT00940000160502.j #34	ENSGT00530000063687.b.b.b.t #37	ENSGT00390000003348	ENSGT00940000159438.hb.b.a	ENSGT00940000157503.i.a.d	ENSGT00940000158685.t.b	ENSGT00730000111044.s	ENSGT00940000154102.b.a.b.e	ENSGT00950000182955.a.b.a.i #22	ENSGT01020000230394.e.a.a.b.a.b.d #23
Common carp reference	MODERN SPECIES	23	ENSCCRG00000043518	ENSCCRG00000002929	pcsk1nl (ENSCCRG00000072367)	ENSCCRG00000050111	ENSCCRG00000040806	cdk20 (ENSCCRG00000002150)	hcfc1b (ENSCCRG00000002147)	ENSCCRG00000021365 #34	mecp2 (ENSCCRG00000062551) #37	ENSCCRG00000021358	ENSCCRG00000021342	tfe3a (ENSCCRG00000025498)	zgc:113363 (ENSCCRG00000025731)	cxxc1a (ENSCCRG00000025486)	ENSCCRG00000025735	abcd1 (ENSCCRG00000025744) #22	ENSCCRG00000030157 #23	SRPK3 (ENSCCRG00000080303) #24	ENSCCRG00000069480	comta (ENSCCRG00000052635)	ENSCCRG00000052636	grm6a (ENSCCRG00000018975)	ENSCCRG00000043673	uxt (ENSCCRG00000054398)	zgc:86609 (ENSCCRG00000011959)	ENSCCRG00000064227	ENSCCRG00000071159	otud5a (ENSCCRG00000020046)	pim2 (ENSCCRG00000071894)	ENSCCRG00000071095	slc35a2 (ENSCCRG00000035398)
Golden-line barbel	MODERN SPECIES	441	ENSSGRG00000019859	ENSSGRG00000019860	ENSSGRG00000019863	HDAC6 (ENSSGRG00000019867)	ENSSGRG00000019938	cdk20 (ENSSGRG00000019946)	cdk20 (ENSSGRG00000019947)	hcfc1b (ENSSGRG00000019974)	ENSSGRG00000020396	mecp2 (ENSSGRG00000020397) #37	ENSSGRG00000020398	FGD1 (ENSSGRG00000020400)	ENSSGRG00000020478	zgc:113363 (ENSSGRG00000020479)	ENSSGRG00000020482	abcd1 (ENSSGRG00000020483) #22	ENSSGRG00000020509 #23
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	3288															ENSCARG00000061949	abcd1 (ENSCARG00000061985) #22
Goldfish	MODERN SPECIES	48	ENSCARG00000016745	HDAC6 (ENSCARG00000014612)	ENSCARG00000014548	cdk20 (ENSCARG00000014545)	ENSCARG00000014540	hcfc1b (ENSCARG00000013922)	ENSCARG00000013822 #34	mecp2 (ENSCARG00000013811) #37	ENSCARG00000013801	FGD1 (ENSCARG00000013577)	tfe3a (ENSCARG00000013560)	zgc:113363 (ENSCARG00000013546)	cxxc1a (ENSCARG00000013188)	mbd1a (ENSCARG00000013159)	ENSCARG00000013152	abcd1 (ENSCARG00000012822) #22	ENSCARG00000011771 #23	SRPK3 (ENSCARG00000011511) #24	tsr2 (ENSCARG00000011484)	CDK16 (ENSCARG00000011331)	comta (ENSCARG00000011300)	grm6a (ENSCARG00000009693)	USP11 (ENSCARG00000009214)	zgc:86609 (ENSCARG00000009187)	uxt (ENSCARG00000009182)	ENSCARG00000009172	ENSCARG00000009168	otud5a (ENSCARG00000009129)	pim2 (ENSCARG00000009106)	ENSCARG00000009101	slc35a2 (ENSCARG00000009092)
Cyprininae	ANCESTRAL SPECIES	111											ENSGT00940000159438.hb.a	ENSGT00940000157503.i.a.c	ENSGT00940000158685.t.a	ENSGT00730000111044.t	ENSGT00940000154102.b.a.b.f	ENSGT00950000182955.a.b.a.j #22	ENSGT01020000230394.e.a.a.b.a.b.c #23	ENSGT00940000157877.b.g.a #24	ENSGT00390000012692.p	ENSGT00940000156963.a.b.a	ENSGT00940000155317.a.a.i.b	ENSGT00390000002062.p	ENSGT00390000002062.o	ENSGT01030000234648.a.b.a.b.a.a.b	ENSGT00940000160485.v	ENSGT00390000005780.a.a	ENSGT00390000018078.r	ENSGT00940000157571.b	ENSGT00940000165528.c	ENSGT00940000158963.b.b.a	ENSGT00940000163427.c.ab.a
Cyprininae_a	ANCESTRAL SPECIES	111		ENSGT00990000203541.b.b	ENSGT00940000159563.b	ENSGT00940000166313.b.b	ENSGT00940000159128.a	ENSGT00940000167532.a.b	ENSGT00940000160502.i #34	ENSGT00530000063687.b.b.b.s #37	ENSGT00940000159438.hb.b.b	ENSGT00940000159438.hb.a	ENSGT00940000157503.i.a.c	ENSGT00940000158685.t.a	ENSGT00730000111044.t	ENSGT00940000169444	ENSGT00940000154102.b.a.b.f	ENSGT00950000182955.a.b.a.j #22	ENSGT01020000230394.e.a.a.b.a.b.c #23	ENSGT00940000157877.b.g.a #24	ENSGT00390000012692.p	ENSGT00940000156963.a.b.a	ENSGT00940000155317.a.a.i.b	ENSGT00390000002062.p	ENSGT01030000234648.a.b.a.b.a.a.b	ENSGT00940000160485.v	ENSGT00390000005780.a.a	ENSGT00390000018078.r	ENSGT00940000157571.b	ENSGT00940000165528.c	ENSGT00940000158963.b.b.a	ENSGT00950000182827.B.d	ENSGT00390000011863.c.p #21
Common carp reference	MODERN SPECIES	17	ENSCCRG00000004092	pym1 (ENSCCRG00000004095)	ENSCCRG00000047276	ENSCCRG00000000986	ENSCCRG00000000990	ENSCCRG00000035394	cdk20 (ENSCCRG00000010099)	ENSCCRG00000002126 #34	mecp2 (ENSCCRG00000076063) #37	ENSCCRG00000002107	tfe3a (ENSCCRG00000034728)	zgc:113363 (ENSCCRG00000034733)	cxxc1a (ENSCCRG00000034737)	mbd1a (ENSCCRG00000065415)	ENSCCRG00000035218	abcd1 (ENSCCRG00000035216) #22	ENSCCRG00000030238 #23	SRPK3 (ENSCCRG00000025752) #24	ENSCCRG00000067741	comta (ENSCCRG00000025764)	abt1 (ENSCCRG00000025767)	grm6a (ENSCCRG00000044676)	ENSCCRG00000042969	zgc:86609 (ENSCCRG00000075696)	uxt (ENSCCRG00000068398)	ENSCCRG00000058800	ENSCCRG00000019150	ENSCCRG00000069233	otud5a (ENSCCRG00000077446)	slc35a2 (ENSCCRG00000081173)	slc6a8 (ENSCCRG00000033069) #20
Golden-line barbel	MODERN SPECIES	63	ssuh2rs1 (ENSSGRG00000033326)	ENSSGRG00000033327	ENSSGRG00000033328	ENSSGRG00000033330	ENSSGRG00000033331	ENSSGRG00000033395	cdk20 (ENSSGRG00000033396)	hcfc1b (ENSSGRG00000033403)	ENSSGRG00000033459 #34	mecp2 (ENSSGRG00000033460) #37	FGD1 (ENSSGRG00000033479)	tfe3a (ENSSGRG00000033483)	zgc:113363 (ENSSGRG00000033484)	cxxc1a (ENSSGRG00000033487)	ENSSGRG00000033490	abcd1 (ENSSGRG00000033492) #22	PLXNB3 (ENSSGRG00000033604) #23	SRPK3 (ENSSGRG00000034455) #24	tsr2 (ENSSGRG00000035040)	CDK16 (ENSSGRG00000035043)	comta (ENSSGRG00000035052)	abt1 (ENSSGRG00000035053)	grm6a (ENSSGRG00000035056)	USP11 (ENSSGRG00000035063)	zgc:86609 (ENSSGRG00000036052)	uxt (ENSSGRG00000036086)	ENSSGRG00000036088	ENSSGRG00000036090	otud5a (ENSSGRG00000036096)	slc35a2 (ENSSGRG00000036136)	bcap31 (ENSSGRG00000036138) #21
Zebrafish	MODERN SPECIES	23	selenoh (ENSDARG00000093022)	pcsk1nl (ENSDARG00000076170)	ENSDARG00000076943	HDAC6 (ENSDARG00000008384)	ENSDARG00000059130	cdk20 (ENSDARG00000003867)	hcfc1b (ENSDARG00000012519)	ENSDARG00000025949 #34	mecp2 (ENSDARG00000014218) #37	FGD1 (ENSDARG00000100402)	tfe3a (ENSDARG00000098903)	zgc:113363 (ENSDARG00000101206)	cxxc1a (ENSDARG00000101996)	mbd1a (ENSDARG00000101205)	ENSDARG00000012449	abcd1 (ENSDARG00000074876) #22	ENSDARG00000032990 #23	SRPK3 (ENSDARG00000005916) #24	tsr2 (ENSDARG00000005772)	CDK16 (ENSDARG00000032072)	comta (ENSDARG00000015337)	abt1 (ENSDARG00000043666)	grm6a (ENSDARG00000017742)	ENSDARG00000076303	zgc:86609 (ENSDARG00000029479)	uxt (ENSDARG00000019339)	ELK1 (ENSDARG00000078066)	ENSDARG00000077112	otud5a (ENSDARG00000059006)	pim2 (ENSDARG00000059001)	ENSDARG00000093019
Euteleosteomorpha	ANCESTRAL SPECIES	144		ENSGT00600000085663	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00940000167532	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT00390000003348	ENSGT00940000159438	ENSGT00940000157503.i.a	ENSGT00730000111044	ENSGT00940000169444	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00390000002062	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000160485	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00390000011863.c #21
Acanthomorphata	ANCESTRAL SPECIES	156	ENSGT00940000159128	ENSGT00940000166313.b	ENSGT00940000159563	ENSGT00990000203541.b	ENSGT01030000234637.b.c.g	ENSGT00730000111044	ENSGT00940000155480.d	ENSGT00940000158685	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00390000002062	ENSGT00940000156805
Euacanthomorphacea	ANCESTRAL SPECIES	61	ENSGT00390000018078	ENSGT00940000159128	ENSGT00940000156315.f	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00990000210258	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00940000156805	ENSGT00390000002062
Percomorphaceae	ANCESTRAL SPECIES	36	ENSGT00940000166313.b	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00990000210258	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00390000002062	ENSGT00940000156805
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	168																ENSHCOG00000000762 #22	ENSHCOG00000013186 ##23	ENSHCOG00000013194	ENSHCOG00000013200	ENSHCOG00000013209
Tiger tail seahorse	MODERN SPECIES	476																abcd1 (ENSHCOG00000020002) #22
Percomorphaceae_B	ANCESTRAL SPECIES	6	ENSGT00940000166313.b	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00990000210258	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Percomorphaceae_C	ANCESTRAL SPECIES	4	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000181187	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00990000210258	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Percomorphaceae_D	ANCESTRAL SPECIES	4	ENSGT00940000166313.b	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000181187	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000175919	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000155317.a.a.m	ENSGT00940000156963.a.b
Carangaria	ANCESTRAL SPECIES	2	ENSGT00940000166313.b	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000181187	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000175919	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000155317.a.a.m	ENSGT00940000156963.a.b
Carangaria_A	ANCESTRAL SPECIES	1	ENSGT00390000018078	ENSGT00940000159128	ENSGT00940000156315.f	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000181187	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000175919	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000155317.a.a.m	ENSGT00940000156963.a.b
Seriola	ANCESTRAL SPECIES	75	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT00940000154856.A.b.e.a	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000181187	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000175919	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000155317.a.a.m	ENSGT00940000156963.a.b
Greater amberjack	MODERN SPECIES	150	ENSSDUG00000020447	cacna1fb (ENSSDUG00000020229)	ENSSDUG00000020093	sypa (ENSSDUG00000020071)	ENSSDUG00000020058	ENSSDUG00000019982	cxxc1a (ENSSDUG00000019959)	ENSSDUG00000019955	TFE3 (ENSSDUG00000019935)	FGD1 (ENSSDUG00000019849)	ENSSDUG00000019824	mecp2 (ENSSDUG00000019809) #37	ENSSDUG00000019781 #34	ENSSDUG00000019763	ENSSDUG00000019722	abcd1 (ENSSDUG00000019696) #22	PLXNB3 (ENSSDUG00000019515) #23	ENSSDUG00000019492	SRPK3 (ENSSDUG00000019453) #24	tsr2 (ENSSDUG00000019445)	GRM6 (ENSSDUG00000019376)	rad51c (ENSSDUG00000019366)	abt1 (ENSSDUG00000019357)	COMT (ENSSDUG00000019301)	CDK16 (ENSSDUG00000019268)
Yellowtail amberjack	MODERN SPECIES	2724		ENSSLDG00000006900	sypa (ENSSLDG00000006865)	ENSSLDG00000006797	ENSSLDG00000006702	CXXC1 (ENSSLDG00000006497)	ENSSLDG00000006443	TFE3 (ENSSLDG00000006428)	ENSSLDG00000006396	ENSSLDG00000006375	ENSSLDG00000006346	mecp2 (ENSSLDG00000006333) #37	ENSSLDG00000006286 #34	ENSSLDG00000006262	ENSSLDG00000006250	abcd1 (ENSSLDG00000006205) #22	PLXNB3 (ENSSLDG00000005974) #23	SRPK3 (ENSSLDG00000005703) #24	tsr2 (ENSSLDG00000005598)	GRM6 (ENSSLDG00000005543)	rad51c (ENSSLDG00000005524)	abt1 (ENSSLDG00000005513)	COMT (ENSSLDG00000005333)	CDK16 (ENSSLDG00000005240)
Barramundi perch	MODERN SPECIES	443		ENSLCAG00010017580	cacna1fb (ENSLCAG00010017615)	ENSLCAG00010017672	FGD1 (ENSLCAG00010017675)	TFE3 (ENSLCAG00010017698)	ENSLCAG00010017702	cxxc1a (ENSLCAG00010017703)	HDAC6 (ENSLCAG00010017708)	ENSLCAG00010017720	ENSLCAG00010017725	sypa (ENSLCAG00010017728)	ENSLCAG00010017736	mecp2 (ENSLCAG00010017746) #37	ENSLCAG00010017753 #34	abcd1 (ENSLCAG00010017910) #22	PLXNB3 (ENSLCAG00010017937) #23	SRPK3 (ENSLCAG00010017967) #24	ENSLCAG00010017968 #24	abt1 (ENSLCAG00010017969)	rad51c (ENSLCAG00010017971)	GRM6 (ENSLCAG00010018045)	ENSLCAG00010018354	CDK16 (ENSLCAG00010018396)
Pleuronectoidei	ANCESTRAL SPECIES	24	ENSGT00940000166313.b	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000181187	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000175919	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062
Tongue sole	MODERN SPECIES	1	ENSCSEG00000017899	ENSCSEG00000017884	cacna1fb (ENSCSEG00000017631)	sypa (ENSCSEG00000017580)	ENSCSEG00000017474	HDAC6 (ENSCSEG00000017407)	CXXC1 (ENSCSEG00000017380)	ENSCSEG00000017371	ENSCSEG00000017362	FGD1 (ENSCSEG00000017343)	ENSCSEG00000017332	ENSCSEG00000017325 #37	ENSCSEG00000017284 #34	ENSCSEG00000017270	ENSCSEG00000017213	abcd1 (ENSCSEG00000017155) #22	ENSCSEG00000017060 #23	SRPK3 (ENSCSEG00000017017) #24	tsr2 (ENSCSEG00000017003)	CDK16 (ENSCSEG00000016955)	rad51c (ENSCSEG00000016935)	abt1 (ENSCSEG00000016929)
Turbot	MODERN SPECIES	2	ENSSMAG00000011963	nr2c2 (ENSSMAG00000011972)	mrps25 (ENSSMAG00000022586)	ENSSMAG00000012023	trh (ENSSMAG00000012040)	TMCC1 (ENSSMAG00000012052)	PLXND1 (ENSSMAG00000012111) ##23	exorh (ENSSMAG00000012265)	IFT122 (ENSSMAG00000012276)	ENSSMAG00000012385	ENSSMAG00000012438	ENSSMAG00000012446	ENSSMAG00000012458 #37	ENSSMAG00000012466 #34	ENSSMAG00000012502	abcd1 (ENSSMAG00000012522) #22	ENSSMAG00000012623 #23	SRPK3 (ENSSMAG00000012744) #24	tsr2 (ENSSMAG00000012882)	ENSSMAG00000012928	ENSSMAG00000012972	ENSSMAG00000032588	cnbpa (ENSSMAG00000029786)	ENSSMAG00000013004	ENSSMAG00000013028	IQSEC1 (ENSSMAG00000013037)	NUP210 (ENSSMAG00000013104)	FBLN2 (ENSSMAG00000013213)	WNT7A (ENSSMAG00000013237)	zgc:171857 (ENSSMAG00000013246)	ENSSMAG00000013261
Anabantaria	ANCESTRAL SPECIES	3	ENSGT00940000156315.f	ENSGT00940000169444	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Anabantoidei	ANCESTRAL SPECIES	2	ENSGT00390000018078	ENSGT00940000159128	ENSGT00940000170958	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000175919	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00940000156805	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00390000012692	ENSGT00390000002062	ENSGT00940000156963.a.b
Climbing perch	MODERN SPECIES	20	ENSATEG00000019956	ENSATEG00000019809	sypa (ENSATEG00000019777)	ENSATEG00000019759	ENSATEG00000019652	cxxc1a (ENSATEG00000019631)	ENSATEG00000019604	ENSATEG00000019578	ENSATEG00000019560	ENSATEG00000019532	ENSATEG00000019515	ENSATEG00000028169	ENSATEG00000026321 #37	ENSATEG00000019432 #34	ENSATEG00000019386	abcd1 (ENSATEG00000019330) #22	ENSATEG00000019296	ENSATEG00000019117 #23	SRPK3 (ENSATEG00000019084) #24	ENSATEG00000019071	ENSATEG00000019019	tsr2 (ENSATEG00000019009)	ENSATEG00000018998	ENSATEG00000018948
Siamese fighting fish	MODERN SPECIES	18	ENSBSLG00000017217	ENSBSLG00000017172	uxt (ENSBSLG00000017147)	cdk20 (ENSBSLG00000016954)	ENSBSLG00000016928	ENSBSLG00000016917	ENSBSLG00000016683	sypa (ENSBSLG00000013678)	ENSBSLG00000013668	ENSBSLG00000013249	ENSBSLG00000012370	FGD1 (ENSBSLG00000012015)	ENSBSLG00000011979	mecp2 (ENSBSLG00000011570) #37	ENSBSLG00000011544 #34	abcd1 (ENSBSLG00000010828) #22	ENSBSLG00000010491 #23
Zig-zag eel	MODERN SPECIES	21	ENSMAMG00000012168	ENSMAMG00000012150	ENSMAMG00000012089	sypa (ENSMAMG00000012046)	ENSMAMG00000011945	ENSMAMG00000011914	cxxc1a (ENSMAMG00000011895)	ENSMAMG00000011870	ENSMAMG00000011838	ENSMAMG00000011823	ENSMAMG00000011807	ENSMAMG00000011796 #37	ENSMAMG00000011744 #34	ENSMAMG00000011723	ENSMAMG00000011700	abcd1 (ENSMAMG00000011668) #22	ENSMAMG00000011573 #23	SRPK3 (ENSMAMG00000011547) #24	tsr2 (ENSMAMG00000011540)	grm6a (ENSMAMG00000011504)	ENSMAMG00000011498	ENSMAMG00000011460	ENSMAMG00000011416	ENSMAMG00000025721	ENSMAMG00000011361	ENSMAMG00000011315	dip2ba (ENSMAMG00000011261)	atf7a (ENSMAMG00000011234)	asb8 (ENSMAMG00000027831)	ENSMAMG00000011206	pfkma (ENSMAMG00000011141)
Eupercaria	ANCESTRAL SPECIES	4	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000181187	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00990000210258	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.a #22
Tetraodon	MODERN SPECIES	26	ENSTNIG00000003592	ENSTNIG00000003591	ENSTNIG00000003590	ENSTNIG00000003589	PIEZO1 (ENSTNIG00000003588)	GRIK3 (ENSTNIG00000012189)	CSF3R (ENSTNIG00000001409)	mrps15 (ENSTNIG00000012190)	OSCP1 (ENSTNIG00000012191)	STK40 (ENSTNIG00000012192)	sh3d21 (ENSTNIG00000012193)	THRAP3 (ENSTNIG00000012194)	ENSTNIG00000012195	dnali1 (ENSTNIG00000003732)	gnl2 (ENSTNIG00000003733)	abcd1 (ENSTNIG00000006189) #22	ENSTNIG00000003614	ENSTNIG00000005305	ENSTNIG00000005304	ENSTNIG00000000317	ENSTNIG00000005303	pus10 (ENSTNIG00000003362)	cct4 (ENSTNIG00000003361)	XPO1 (ENSTNIG00000003360)	ENSTNIG00000002273	ENSTNIG00000014965	rad51c (ENSTNIG00000014964)	ENSTNIG00000014963	CDK16 (ENSTNIG00000014962)	abt1 (ENSTNIG00000014961)	ENSTNIG00000014960
Eupecaria_A	ANCESTRAL SPECIES	4	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000181187	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00990000210258	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Ballan wrasse	MODERN SPECIES	972													ENSLBEG00000021274 #34	ENSLBEG00000021214	ENSLBEG00000021185	abcd1 (ENSLBEG00000021153) #22
Eupecaria_B	ANCESTRAL SPECIES	5	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000181187	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00990000210258	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Perciformes	ANCESTRAL SPECIES	37	ENSGT00940000165528	ENSGT00940000157571	ENSGT00390000018078	ENSGT00940000159128	ENSGT00940000156315.f	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT00530000063687.b.b.b #37	ENSGT00730000111044	ENSGT00940000159563	ENSGT00990000203541.b	ENSGT01030000234637.b.c.g	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00390000002062	ENSGT00940000156805	ENSGT00940000156963.a.b
Perciformes_a	ANCESTRAL SPECIES	5	ENSGT00940000166313.a	ENSGT00940000166196	ENSGT00940000164702.b	ENSGT01030000234549.a.a.a.a.a.a.c.a.b	ENSGT01030000234549.a.a.a.a.a.a.c.a.a	ENSGT01030000234549.a.a.a.b	ENSGT00940000155877	ENSGT00940000157503.i.b	ENSGT00730000111044	ENSGT00940000159563	ENSGT00990000203541.b	ENSGT01030000234637.b.c.g	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00390000002062	ENSGT00940000156963.a.b	ENSGT00940000156805
Pike perch	MODERN SPECIES	96	ENSSLUG00000001658	ENSSLUG00000001667	FGD1 (ENSSLUG00000001674)	ENSSLUG00000001688	ENSSLUG00000001694	ENSSLUG00000001700	cxxc1a (ENSSLUG00000001738)	ENSSLUG00000001926	ENSSLUG00000002307	sypa (ENSSLUG00000002310)	ENSSLUG00000002315 #34	ENSSLUG00000002325	ENSSLUG00000002337	ENSSLUG00000002355	ENSSLUG00000002492	abcd1 (ENSSLUG00000002614) #22	ENSSLUG00000004185 #23	SRPK3 (ENSSLUG00000005919) #24	tsr2 (ENSSLUG00000006530)	GRM6 (ENSSLUG00000006540)	abt1 (ENSSLUG00000006557)	CDK16 (ENSSLUG00000006596)	rad51c (ENSSLUG00000006868)	ENSSLUG00000006872	ENSSLUG00000006879	ENSSLUG00000006885	sult1st6 (ENSSLUG00000006894)
Cottioidei	ANCESTRAL SPECIES	47	ENSGT00940000157571	ENSGT00390000018078	ENSGT00940000159128	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT00530000063687.b.b.b #37	ENSGT00390000003348	ENSGT00940000159438	ENSGT00940000157503.j	ENSGT00730000111044	ENSGT00940000159563	ENSGT00990000203541.b	ENSGT01030000234637.b.c.g	ENSGT00940000160502 #34	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00390000002062	ENSGT00940000156805	ENSGT00940000156963.a.b
Stickleback	MODERN SPECIES	74																abcd1 (ENSGACG00000000263) #22
Lumpfish	MODERN SPECIES	22	mecp2 (ENSCLMG00005000547) #37	ENSCLMG00005000541	FGD1 (ENSCLMG00005000537)	TFE3 (ENSCLMG00005000535)	ENSCLMG00005000534	cxxc1a (ENSCLMG00005000489)	ENSCLMG00005000208	ENSCLMG00005000133	sypa (ENSCLMG00005000117)	ENSCLMG00005000110	ENSCLMG00005000096	ENSCLMG00005000075	ENSCLMG00005017751 #34	ENSCLMG00005017746	ENSCLMG00005017745	abcd1 (ENSCLMG00005017334) #22	PLXNB3 (ENSCLMG00005016945) #23	SRPK3 (ENSCLMG00005013236) #24	tsr2 (ENSCLMG00005013178)	ENSCLMG00005013176	GRM6 (ENSCLMG00005013175)	abt1 (ENSCLMG00005013173)	rad51c (ENSCLMG00005013172)	CDK16 (ENSCLMG00005012987)	ENSCLMG00005012971	samhd1 (ENSCLMG00005011739)	snai1b (ENSCLMG00005011734)	TP53INP2 (ENSCLMG00005011732)	GGT7 (ENSCLMG00005011681)	ENSCLMG00005011680	TOP1 (ENSCLMG00005011678)
Eupecaria_C	ANCESTRAL SPECIES	31	ENSGT00940000166313.b	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000181187	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Gilthead seabream	MODERN SPECIES	21	ENSSAUG00010000363	uxt (ENSSAUG00010000346)	cdk20 (ENSSAUG00010000332)	ENSSAUG00010000310	ENSSAUG00010022056	ENSSAUG00010022054	cacna1fb (ENSSAUG00010020946)	ENSSAUG00010020930	ENSSAUG00010020928	ENSSAUG00010020876	ENSSAUG00010020874	ENSSAUG00010020873	ENSSAUG00010020871	ENSSAUG00010020828	ENSSAUG00010020809	abcd1 (ENSSAUG00010020753) #22	ENSSAUG00010020751	ENSSAUG00010020741 #23	SRPK3 (ENSSAUG00010019271) #24	tsr2 (ENSSAUG00010019259)	grm6a (ENSSAUG00010018563)	rad51c (ENSSAUG00010018550)	abt1 (ENSSAUG00010018548)	CDK16 (ENSSAUG00010018454)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	42	ENSGT00940000166313.b	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000181187	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
European seabass	MODERN SPECIES	14	ENSDLAG00005033843	ENSDLAG00005035007	sypa (ENSDLAG00005010429)	ENSDLAG00005024640	ENSDLAG00005031629	cxxc1a (ENSDLAG00005031159)	ENSDLAG00005028920	ENSDLAG00005030977	ENSDLAG00005034191	ENSDLAG00005028443	ENSDLAG00005031463 #37	ENSDLAG00005004067 #34	ENSDLAG00005033657	ENSDLAG00005004085	ENSDLAG00005029985	abcd1 (ENSDLAG00005016340) #22	ENSDLAG00005030649 #23	SRPK3 (ENSDLAG00005031799) #24	tsr2 (ENSDLAG00005029437)	ENSDLAG00005014385	ENSDLAG00005014357	ENSDLAG00005027640	abt1 (ENSDLAG00005014326)	ENSDLAG00005014307	ENSDLAG00005013270	ENSDLAG00005034043	ENSDLAG00005021803	ENSDLAG00005027562	ENSDLAG00005035011	ENSDLAG00005014655	ENSDLAG00005034848
Large yellow croaker	MODERN SPECIES	29	cdk20 (ENSLCRG00005021327)	ENSLCRG00005021172	ENSLCRG00005021163	sypa (ENSLCRG00005021160)	cacna1fb (ENSLCRG00005021100)	ENSLCRG00005021098	CXXC1 (ENSLCRG00005021056)	ENSLCRG00005021054	TFE3 (ENSLCRG00005021053)	FGD1 (ENSLCRG00005020901)	ENSLCRG00005020895	mecp2 (ENSLCRG00005020893) #37	ENSLCRG00005020885 #34	ENSLCRG00005020884	ENSLCRG00005020882	abcd1 (ENSLCRG00005020298) #22	PLXNB3 (ENSLCRG00005020040) #23	SRPK3 (ENSLCRG00005019999) #24	ENSLCRG00005019997	grm6a (ENSLCRG00005019925)	rad51c (ENSLCRG00005019923)	abt1 (ENSLCRG00005019922)	CDK16 (ENSLCRG00005019813)
Ovalentaria	ANCESTRAL SPECIES	6	ENSGT00940000159128	ENSGT00940000166313.b	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Atherinomorphae	ANCESTRAL SPECIES	50	ENSGT00940000159128	ENSGT00940000166313.b	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Oryzias	ANCESTRAL SPECIES	58	ENSGT00940000164033	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00940000166923	ENSGT00490000043329.a.a.a.vb.a	ENSGT00940000156358	ENSGT00390000018621	ENSGT00940000156650.j	ENSGT00940000156364.a.b	ENSGT00520000055578.a.a.c	ENSGT00940000164771.b	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000175919	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062
Oryzias_b	ANCESTRAL SPECIES	48									ENSGT00940000157506.f #28	ENSGT00940000156364.a.b	ENSGT00520000055578.a.a.c	ENSGT00940000164771.b	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000175919	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000159438	ENSGT00940000157503.j	ENSGT00730000111044	ENSGT00940000159563	ENSGT00990000203541.b	ENSGT01030000234637.b.c.g	ENSGT00940000159855	ENSGT00940000164755.A.b	ENSGT00940000159128
Indian medaka	MODERN SPECIES	23							ENSOMEG00000010709 #28	ENSOMEG00000011037	asxl1 (ENSOMEG00000011144)	ENSOMEG00000011157	ENSOMEG00000011176	ENSOMEG00000011185	mecp2 (ENSOMEG00000011209) #37	ENSOMEG00000011232 #34	ENSOMEG00000011274	abcd1 (ENSOMEG00000011346) #22	ENSOMEG00000011376 #23	ENSOMEG00000011387 #23	ENSOMEG00000011405 #23	SRPK3 (ENSOMEG00000011459) #24	ENSOMEG00000011469 #24	tsr2 (ENSOMEG00000011483)	GRM6 (ENSOMEG00000011505)	rad51c (ENSOMEG00000011578)	abt1 (ENSOMEG00000011593)	FGD1 (ENSOMEG00000011622)	ENSOMEG00000011663	CXXC1 (ENSOMEG00000011705)	ENSOMEG00000011758	ENSOMEG00000011782	sypa (ENSOMEG00000011916)
Javanese ricefish	MODERN SPECIES	21	trim101 (ENSOJAG00000001305)	DNAJC5 (ENSOJAG00000001312)	ENSOJAG00000001321	arl8a (ENSOJAG00000001330)	GPR37L1 (ENSOJAG00000001435)	ENSOJAG00000001437	ENSOJAG00000001445	ENSOJAG00000001451	ccn5 (ENSOJAG00000001457)	ENSOJAG00000001498 #28	ENSOJAG00000001739	asxl1 (ENSOJAG00000002014)	ENSOJAG00000002049	mecp2 (ENSOJAG00000002090) #37	ENSOJAG00000002120	abcd1 (ENSOJAG00000002175) #22	SRPK3 (ENSOJAG00000003070) #24	ENSOJAG00000003748	grm6a (ENSOJAG00000003817)	ENSOJAG00000003947	abt1 (ENSOJAG00000003999)	FGD1 (ENSOJAG00000004025)	ENSOJAG00000004234	TFE3 (ENSOJAG00000004250)	CXXC1 (ENSOJAG00000004282)	ENSOJAG00000004339	ENSOJAG00000005018	SYP (ENSOJAG00000005032)	ENSOJAG00000007688	cdk20 (ENSOJAG00000007754)	uxt (ENSOJAG00000007790)
Oryzias_a	ANCESTRAL SPECIES	77	ENSGT00940000180163	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00940000166923	ENSGT00490000043329.a.a.a.vb.a	ENSGT00940000156358	ENSGT00390000018621	ENSGT00940000156650.j	ENSGT00940000156364.a.b	ENSGT00520000055578.a.a.c	ENSGT00940000164771.b	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000175919	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062
Japanese Medaka HdrR	MODERN SPECIES	21	ENSORLG00000026462	commd7 (ENSORLG00000024421)	dnmt3bb.1 (ENSORLG00000020242)	dnmt3bb.2 (ENSORLG00000030651)	mapre1b (ENSORLG00000020223)	acss2 (ENSORLG00000020201)	tafazzin (ENSORLG00000020160)	atp6ap1a (ENSORLG00000020153)	ENSORLG00000020139	asxl1 (ENSORLG00000020127)	ENSORLG00000027477	ENSORLG00000020120	mecp2 (ENSORLG00000028917) #37	ENSORLG00000028017 #34	ENSORLG00000029784	abcd1 (ENSORLG00000020113) #22	ENSORLG00000028233	ENSORLG00000020098 #23	SRPK3 (ENSORLG00000020076) #24	ENSORLG00000025217	ENSORLG00000025612	tsr2 (ENSORLG00000022662)	ENSORLG00000020032	rad51c (ENSORLG00000020003)	abt1 (ENSORLG00000024030)	ENSORLG00000027136	ENSORLG00000030327	ENSORLG00000019972 #28	VPS13D (ENSORLG00000019952)	ENSORLG00000019895	ENSORLG00000019878
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	1175													ENSOSIG00000013666 #23	ENSOSIG00000013717	ENSOSIG00000013719 #22	ENSOSIG00000013720 #22
Chinese medaka	MODERN SPECIES	1175															ENSOSIG00000013720 #22	ENSOSIG00000013719 #22	ENSOSIG00000013717	ENSOSIG00000013666 #23
Cyprinodontiformes	ANCESTRAL SPECIES	46	ENSGT00940000159247.m	ENSGT00940000169444	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Aplocheiloidei	ANCESTRAL SPECIES	320														ENSGT00940000160502 #34	ENSGT00940000175919	ENSGT00950000182955.a.b.a #22	ENSGT00940000157877.b.g #24	ENSGT00390000012692
Turquoise killifish	MODERN SPECIES	1624	DPM1 (ENSNFUG00015021164)	adnpb (ENSNFUG00015021169)	PARD6B (ENSNFUG00015021172)	BCL2L1 (ENSNFUG00015021328)	COX4I2 (ENSNFUG00015021329)	FAM110A (ENSNFUG00015021332)	NSFL1C (ENSNFUG00015021338)	FKBP1AB (ENSNFUG00015021354)	SDCBP (ENSNFUG00015021361)	SNPHB (ENSNFUG00015021380)	CDK16 (ENSNFUG00015021444)	abt1 (ENSNFUG00015022221)	rad51c (ENSNFUG00015022227)	ENSNFUG00015022247 #34	ENSNFUG00015022285	abcd1 (ENSNFUG00015022296) #22	SRPK3 (ENSNFUG00015022414) #24	ENSNFUG00015022422 #37	ENSNFUG00015022436 #37	FGD1 (ENSNFUG00015022464)	ZGC (ENSNFUG00015022843)	cxxc1a (ENSNFUG00015022848)	HDAC6 (ENSNFUG00015022882)	ENSNFUG00015023118	sypa (ENSNFUG00015023119)	ENSNFUG00015023120	ENSNFUG00015023199	PLXNA3 (ENSNFUG00015023270)	ENSNFUG00015023511	gripap1 (ENSNFUG00015023514)	kcnd1 (ENSNFUG00015023528)
Cyprinodontoidei	ANCESTRAL SPECIES	57	ENSGT00940000169444	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT00940000164472.a.a.b.b.a.a.a.a	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Poeciliinae	ANCESTRAL SPECIES	45	ENSGT00940000169444	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT00940000164472.a.a.b.b.a.a.a.a	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Poecilia	ANCESTRAL SPECIES	79	ENSGT00940000169444	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT00940000164472.a.a.b.b.a.a.a.a	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
NAME_6	ANCESTRAL SPECIES	397															ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Sailfin molly	MODERN SPECIES	1954											ENSPLAG00000007839	UXT (ENSPLAG00000001916)	ENSPLAG00000001908	SYP (ENSPLAG00000001894)	ENSPLAG00000001876	abcd1 (ENSPLAG00000001866) #22
Amazon molly	MODERN SPECIES	890																abcd1 (ENSPFOG00000012630) #22	PLXNB3 (ENSPFOG00000011896) #23	SRPK3 (ENSPFOG00000022695) #24	tsr2 (ENSPFOG00000011824)	grm6a (ENSPFOG00000011555)	rad51c (ENSPFOG00000011542)	abt1 (ENSPFOG00000011510)	CDK16 (ENSPFOG00000011288)	ENSPFOG00000011271
Guppy	MODERN SPECIES	9	ENSPREG00000012119	cacna1fb (ENSPREG00000012143)	ENSPREG00000012233	sypa (ENSPREG00000012259)	ENSPREG00000012354	HDAC6 (ENSPREG00000012414)	cxxc1a (ENSPREG00000012472)	ENSPREG00000012507	ENSPREG00000012514	FGD1 (ENSPREG00000012524)	ENSPREG00000012549	mecp2 (ENSPREG00000012585) #37	ENSPREG00000012629 #34	ENSPREG00000012748	ENSPREG00000012777	abcd1 (ENSPREG00000012807) #22	ENSPREG00000012865 #23	ENSPREG00000012909 #23	ENSPREG00000012919 #23	SRPK3 (ENSPREG00000012974) #24	tsr2 (ENSPREG00000013009)	grm6a (ENSPREG00000013021)	rad51c (ENSPREG00000013050)	abt1 (ENSPREG00000013063)	CDK16 (ENSPREG00000013083)
Platyfish	MODERN SPECIES		ENSXMAG00000022561	ENSXMAG00000024741	ENSXMAG00000021723	sypa (ENSXMAG00000001545)	ENSXMAG00000006655	ENSXMAG00000013014	cxxc1a (ENSXMAG00000013043)	ENSXMAG00000021186	ENSXMAG00000003547	FGD1 (ENSXMAG00000003528)	ENSXMAG00000025932	ENSXMAG00000021429 #37	ENSXMAG00000003511 #34	ENSXMAG00000021127	ENSXMAG00000024465	abcd1 (ENSXMAG00000003466) #22	PLXNB3 (ENSXMAG00000003393) #23	SRPK3 (ENSXMAG00000003381) #24	tsr2 (ENSXMAG00000024827)	grm6a (ENSXMAG00000003346)	rad51c (ENSXMAG00000003344)	abt1 (ENSXMAG00000003341)	CDK16 (ENSXMAG00000003320)	ENSXMAG00000021516	ENSXMAG00000027352	ENSXMAG00000024715	ENSXMAG00000027647	ENSXMAG00000028679	ENSXMAG00000029701	ENSXMAG00000029059	ENSXMAG00000028440
NAME_4	ANCESTRAL SPECIES	162	ENSGT00940000164755.C	ENSGT00940000164755.A	ENSGT00940000164472.a.a.b.b.a.a.a.a	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Sheepshead minnow	MODERN SPECIES	140	ENSCVAG00000008649	ENSCVAG00000008635	cacna1fb (ENSCVAG00000008470)	sypa (ENSCVAG00000002124)	ENSCVAG00000002115	ENSCVAG00000002108	cxxc1a (ENSCVAG00000002083)	ENSCVAG00000001963	TFE3 (ENSCVAG00000001957)	FGD1 (ENSCVAG00000001930)	ENSCVAG00000001919	mecp2 (ENSCVAG00000001916) #37	ENSCVAG00000001909 #34	ENSCVAG00000001900	ENSCVAG00000001895	abcd1 (ENSCVAG00000001887) #22	PLXNB3 (ENSCVAG00000001870) #23	SRPK3 (ENSCVAG00000001855) #24	tsr2 (ENSCVAG00000001845)	grm6a (ENSCVAG00000001842)	ENSCVAG00000001832	abt1 (ENSCVAG00000001828)	CDK16 (ENSCVAG00000001825)	NXPE3 (ENSCVAG00000001817)	ENSCVAG00000001812	cmah (ENSCVAG00000001810)	ENSCVAG00000001803	kcnc2 (ENSCVAG00000001799)	phax (ENSCVAG00000001794)	pmpcb (ENSCVAG00000001788)	dnajc2 (ENSCVAG00000001780)
Mummichog	DUPLICATION
Mummichog	MODERN SPECIES	1334															ENSFHEG00000008554 #22	ENSFHEG00000008590 #22
Mummichog	MODERN SPECIES	1334																ENSFHEG00000008554 #22	ENSFHEG00000008590 #22
Ovalentaria_B	ANCESTRAL SPECIES	2	ENSGT00940000159128	ENSGT00940000166313.b	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b
Cichlidae	ANCESTRAL SPECIES		ENSGT00940000170958	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.a.a	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941.c	ENSGT00600000085659.b	ENSGT00940000155170	ENSGT00530000063168.a.a.b	ENSGT00950000182989.D.a.a.b #25
Pseudocrenilabrinae	ANCESTRAL SPECIES	5	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.a.a	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g.e	ENSGT01030000234637.b.c.g.f	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941.c	ENSGT00940000154285.a.a.c.a.e.a	ENSGT01030000234941.d	ENSGT00950000182888.a.a.a.f	ENSGT00600000085659.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	18	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.a.a	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g.e	ENSGT01030000234637.b.c.g.f	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941.c	ENSGT00940000156038.a.a.d.a.i.a	ENSGT00940000154285.a.a.c.a.e.a	ENSGT01030000234941.d.a	ENSGT00950000182888.a.a.a.f
Haplochromini	ANCESTRAL SPECIES	20	ENSGT00940000159128	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g.e	ENSGT01030000234637.b.c.g.f	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941.c	ENSGT00940000156038.a.a.d.a.i.a	ENSGT00940000154285.a.a.c.a.e.a	ENSGT01030000234941.d.a	ENSGT00950000182888.a.a.a.f
Haplochromini_A	ANCESTRAL SPECIES	17	ENSGT00940000159128	ENSGT00940000170958	ENSGT00940000159855	ENSGT01030000234637.b.c.g.e	ENSGT01030000234637.b.c.g.f	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941.c.b	ENSGT01030000234941.c.a	ENSGT00940000156038.a.a.d.a.i.a	ENSGT00940000154285.a.a.c.a.e.a	ENSGT00950000183145.B.a.a.b.f.e.b.a.b
Haplochromini_B	ANCESTRAL SPECIES	14	ENSGT00940000159128	ENSGT00940000170958	ENSGT00940000159855	ENSGT01030000234637.b.c.g.e	ENSGT01030000234637.b.c.g.f	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062	ENSGT00940000156963.a.b	ENSGT01070000253766.B.f.a	ENSGT00390000016168.b	ENSGT00400000022086.b.a.a	ENSGT01030000234941.c.b	ENSGT01030000234941.c.a	ENSGT00940000156038.a.a.d.a.i.a	ENSGT00940000154285.a.a.c.a.e.a	ENSGT00950000183145.B.a.a.b.f.e.b.a.b
Eastern happy	MODERN SPECIES	12	ENSACLG00000013234	ENSACLG00000013244	SYP (ENSACLG00000013253)	sypa (ENSACLG00000013420)	ENSACLG00000013430	HDAC6 (ENSACLG00000013440)	cxxc1a (ENSACLG00000013463)	ENSACLG00000013610	TFE3 (ENSACLG00000013619)	FGD1 (ENSACLG00000013633)	ENSACLG00000013662	ENSACLG00000013679 #37	ENSACLG00000013689 #34	ENSACLG00000013767	ENSACLG00000013776	abcd1 (ENSACLG00000013880) #22	ENSACLG00000013969	ENSACLG00000013976 #23	SRPK3 (ENSACLG00000014229) #24	ENSACLG00000014259 #24	tsr2 (ENSACLG00000014269)	grm6a (ENSACLG00000014320)	rad51c (ENSACLG00000014360)	abt1 (ENSACLG00000014378)	CDK16 (ENSACLG00000014389)	xkr7b (ENSACLG00000014562)	ENSACLG00000014577	ENSACLG00000014591	ENSACLG00000014595	CABLES2 (ENSACLG00000014603)	ENSACLG00000014623
Zebra mbuna	MODERN SPECIES	1103	ENSMZEG00005026772	cacna1fb (ENSMZEG00005026771)	sypa (ENSMZEG00005026770)	sypa (ENSMZEG00005026769)	ENSMZEG00005026768	HDAC6 (ENSMZEG00005026767)	cxxc1a (ENSMZEG00005026766)	ENSMZEG00005026765	TFE3 (ENSMZEG00005026764)	FGD1 (ENSMZEG00005026763)	ENSMZEG00005026762	ENSMZEG00005026761 #37	ENSMZEG00005026760 #34	ENSMZEG00005026759	ENSMZEG00005026757	abcd1 (ENSMZEG00005026756) #22	ENSMZEG00005026754 #23	SRPK3 (ENSMZEG00005026753) #24	tsr2 (ENSMZEG00005026752)	grm6a (ENSMZEG00005026751)	rad51c (ENSMZEG00005026750)	abt1 (ENSMZEG00005026748)	CDK16 (ENSMZEG00005026744)	xkr7b (ENSMZEG00005026742)	CCM2L (ENSMZEG00005026740)	CABLES2 (ENSMZEG00005026739)	ENSMZEG00005026737	ENSMZEG00005026736	ENSMZEG00005026734	ENSMZEG00005026733	ENSMZEG00005026721
P. nyererei	MODERN SPECIES	505	ENSPNYG00000021022	ENSPNYG00000021009	cacna1fb (ENSPNYG00000020927)	sypa (ENSPNYG00000020841)	sypa (ENSPNYG00000020759)	ENSPNYG00000020743	HDAC6 (ENSPNYG00000020695)	CXXC1 (ENSPNYG00000020491)	TFE3 (ENSPNYG00000020458)	FGD1 (ENSPNYG00000020422)	ENSPNYG00000020399	ENSPNYG00000020387 #37	ENSPNYG00000020350 #34	ENSPNYG00000020329	ENSPNYG00000020321	abcd1 (ENSPNYG00000020284) #22	ENSPNYG00000020080 #23	SRPK3 (ENSPNYG00000020031) #24	ENSPNYG00000020006 #24	tsr2 (ENSPNYG00000019995)	grm6a (ENSPNYG00000019962)	rad51c (ENSPNYG00000019952)	abt1 (ENSPNYG00000019939)	CDK16 (ENSPNYG00000019878)	xkr7b (ENSPNYG00000019858)	ENSPNYG00000019847	ENSPNYG00000019834	CABLES2 (ENSPNYG00000019819)	ENSPNYG00000019807	ENSPNYG00000019798	ENSPNYG00000019784
Burton s mouthbrooder	MODERN SPECIES	396	ENSHBUG00000019603	cacna1fb (ENSHBUG00000020008)	sypa (ENSHBUG00000020041)	sypa (ENSHBUG00000020057)	ENSHBUG00000000790	HDAC6 (ENSHBUG00000020208)	cxxc1a (ENSHBUG00000020227)	zgc:113363 (ENSHBUG00000020240)	TFE3 (ENSHBUG00000020599)	FGD1 (ENSHBUG00000020661)	ENSHBUG00000020689	ENSHBUG00000020716 #37	ENSHBUG00000020760 #34	ENSHBUG00000020787	ENSHBUG00000020813	abcd1 (ENSHBUG00000020860) #22	PLXNB3 (ENSHBUG00000020962) #23	SRPK3 (ENSHBUG00000020976) #24	tsr2 (ENSHBUG00000020989)	grm6a (ENSHBUG00000021021)	rad51c (ENSHBUG00000021032)	abt1 (ENSHBUG00000021041)	CDK16 (ENSHBUG00000021082)	xkr7b (ENSHBUG00000021111)	CCM2L (ENSHBUG00000021124)	ENSHBUG00000021135
Lyretail cichlid	MODERN SPECIES	397	ENSNBRG00000009843	cacna1fb (ENSNBRG00000009240)	sypa (ENSNBRG00000008996)	sypa (ENSNBRG00000008978)	ENSNBRG00000008903	HDAC6 (ENSNBRG00000008791)	cxxc1a (ENSNBRG00000008635)	ENSNBRG00000008595	TFE3 (ENSNBRG00000008566)	FGD1 (ENSNBRG00000008517)	ENSNBRG00000008488	mecp2 (ENSNBRG00000008411) #37	ENSNBRG00000008359 #34	ENSNBRG00000008338	ENSNBRG00000008309	abcd1 (ENSNBRG00000008264) #22	PLXNB3 (ENSNBRG00000008035) #23	SRPK3 (ENSNBRG00000007989) #24	ENSNBRG00000007974 #24	tsr2 (ENSNBRG00000007965)	GRM6 (ENSNBRG00000007667)	rad51c (ENSNBRG00000007632)	ENSNBRG00000007616	xkr7b (ENSNBRG00000007600)	ENSNBRG00000007589	ENSNBRG00000007573	ENSNBRG00000007547	ENSNBRG00000007543	ENSNBRG00000007534	ENSNBRG00000007515	ENSNBRG00000007485
Nile tilapia	MODERN SPECIES	12	cacna1fb (ENSONIG00000000861)	sypa (ENSONIG00000000856)	ENSONIG00000038349	ENSONIG00000029354	HDAC6 (ENSONIG00000000836)	cxxc1a (ENSONIG00000000828)	ENSONIG00000038372	ENSONIG00000038680	TFE3 (ENSONIG00000000820)	FGD1 (ENSONIG00000000817)	ENSONIG00000030751	ENSONIG00000040360 #37	ENSONIG00000000806 #34	ENSONIG00000000801	ENSONIG00000000800	abcd1 (ENSONIG00000000793) #22	PLXNB3 (ENSONIG00000000783) #23	SRPK3 (ENSONIG00000000769) #24	tsr2 (ENSONIG00000000763)	grm6a (ENSONIG00000000755)	abt1 (ENSONIG00000000750)	rad51c (ENSONIG00000042488)	CDK16 (ENSONIG00000000736)	CCM2L (ENSONIG00000000732)	ENSONIG00000000730	ENSONIG00000033261	ENSONIG00000039995	ENSONIG00000041257	ENSONIG00000040125	ENSONIG00000030712	ENSONIG00000014581
Midas cichlid	MODERN SPECIES	129	ENSACIG00000003865	ENSACIG00000003885	cacna1fb (ENSACIG00000003899)	sypa (ENSACIG00000004022)	sypa (ENSACIG00000004050)	ENSACIG00000004183	HDAC6 (ENSACIG00000004282)	cxxc1a (ENSACIG00000004393)	TFE3 (ENSACIG00000004421)	FGD1 (ENSACIG00000004445)	ENSACIG00000004515	ENSACIG00000004533	ENSACIG00000004554 #34	ENSACIG00000004586	ENSACIG00000004604	abcd1 (ENSACIG00000004632) #22	PLXNB3 (ENSACIG00000004668) #23	SRPK3 (ENSACIG00000004837) #24	ENSACIG00000004868 #24	tsr2 (ENSACIG00000004880)	grm6a (ENSACIG00000004895)	rad51c (ENSACIG00000004925)	abt1 (ENSACIG00000004935)	CDK16 (ENSACIG00000004946)	ENSACIG00000004977	xkr7b (ENSACIG00000004985)	CCM2L (ENSACIG00000005002)
Pomacentridae	ANCESTRAL SPECIES	94				ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563.j	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000175919	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000002062	ENSGT00940000156805	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00940000156478	ENSGT00390000007823	ENSGT00940000159151	ENSGT00940000160318.c.a	ENSGT00940000157078	ENSGT01100000263518.B.b.a.a	ENSGT00940000159657.d.h
Bicolor damselfish	MODERN SPECIES	1261				sypa (ENSSPAG00000005782)	ENSSPAG00000005676	HDAC6 (ENSSPAG00000005465)	cxxc1a (ENSSPAG00000005419)	ENSSPAG00000005409	TFE3 (ENSSPAG00000005397)	FGD1 (ENSSPAG00000005329)	ENSSPAG00000005299	mecp2 (ENSSPAG00000005289) #37	ENSSPAG00000005179 #34	ENSSPAG00000005148	ENSSPAG00000005100	abcd1 (ENSSPAG00000005074) #22	PLXNB3 (ENSSPAG00000004990) #23
Pomacentridae_A	ANCESTRAL SPECIES	92					ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563.j	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000002062	ENSGT00940000156805	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00940000156478	ENSGT00390000007823	ENSGT00940000159151	ENSGT00940000160318.c.a	ENSGT00940000157078	ENSGT01100000263518.B.b.a.a	ENSGT00940000159657.d.h
Spiny chromis	MODERN SPECIES	1947																abcd1 (ENSAPOG00000003019) #22	ENSAPOG00000003060 #23
Amphiprion	ANCESTRAL SPECIES	119					ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563.j	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348	ENSGT00530000063687.b.b.b #37	ENSGT00940000160502 #34	ENSGT00940000167532	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000157877.b.g #24	ENSGT00390000002062	ENSGT00940000156805	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00390000012692	ENSGT00940000156963.a.b	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00940000156478	ENSGT00390000007823	ENSGT00940000159151	ENSGT00940000160318.c.a	ENSGT00940000157078	ENSGT01100000263518.B.b.a.a	ENSGT00940000159657.d.h
Orange clownfish	MODERN SPECIES	22				sypa (ENSAPEG00000024182)	ENSAPEG00000024156	HDAC6 (ENSAPEG00000024131)	cxxc1a (ENSAPEG00000024116)	ENSAPEG00000024110	ENSAPEG00000024105	ENSAPEG00000024096	FGD1 (ENSAPEG00000024070)	ENSAPEG00000024051	mecp2 (ENSAPEG00000023997) #37	ENSAPEG00000023917 #34	ENSAPEG00000023882	abcd1 (ENSAPEG00000023814) #22	ENSAPEG00000023797	ENSAPEG00000023723	PLXNB3 (ENSAPEG00000023646) #23	SRPK3 (ENSAPEG00000023629) #24	abt1 (ENSAPEG00000023617)	rad51c (ENSAPEG00000023593)	GRM6 (ENSAPEG00000023556)	tsr2 (ENSAPEG00000023549)	CDK16 (ENSAPEG00000023524)	dnase1l1 (ENSAPEG00000023457)	hm13 (ENSAPEG00000023409)	mrgbp (ENSAPEG00000023381)	SULF2 (ENSAPEG00000023292)	ENSAPEG00000023270	ENSAPEG00000023263
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	971															ENSAOCG00000015786	ENSAOCG00000015730 #22
Clown anemonefish	MODERN SPECIES	11																abcd1 (ENSAOCG00000024522) #22
Pinecone sodierfish	MODERN SPECIES	21	ENSMMDG00005019548	cacna1fb (ENSMMDG00005019540)	SYP (ENSMMDG00005019406)	ENSMMDG00005019395	ENSMMDG00005019393	HDAC6 (ENSMMDG00005018921)	cxxc1a (ENSMMDG00005018914)	ENSMMDG00005018911	FGD1 (ENSMMDG00005018890)	ENSMMDG00005018884	ENSMMDG00005018881	mecp2 (ENSMMDG00005018815) #37	ENSMMDG00005018810 #34	hcfc1b (ENSMMDG00005018736)	ENSMMDG00005018732	abcd1 (ENSMMDG00005017973) #22
Protacanthopterygii	ANCESTRAL SPECIES	168	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00940000167532	ENSGT00940000161383.d.b #33	ENSGT00940000160502 #34	ENSGT00530000063687.b.b.b #37	ENSGT00390000003348	ENSGT00940000159438	ENSGT00940000157503.i.a	ENSGT00730000111044	ENSGT00940000169444	ENSGT00940000154102.b.a.b	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23
Salmoninae	ANCESTRAL SPECIES	516	ENSGT00940000159667.a.e	ENSGT00940000159855	ENSGT01030000234637.b.c.g.g.a	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00940000159128	ENSGT00940000167532	ENSGT00940000161383.d.b.a.b #33	ENSGT00530000063687.b.b.b.q #37	ENSGT00390000003348	ENSGT00940000159438.db.a.b	ENSGT00940000157503.i.a.f	ENSGT00940000158685.ib	ENSGT00940000169444	ENSGT00940000154102.b.a.b.a	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b #23	ENSGT00940000161969.q
Salmoninae_a	ANCESTRAL SPECIES	27	ENSGT00940000159667.a.e	ENSGT00940000159855	ENSGT01030000234637.b.c.g.g.a	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00940000159128	ENSGT00940000167532	ENSGT00940000161383.d.b.a.b #33	ENSGT00530000063687.b.b.b.q #37	ENSGT00390000003348	ENSGT00940000159438.db.a.b	ENSGT00940000157503.i.a.f	ENSGT00940000158685.ib	ENSGT00940000169444	ENSGT00940000154102.b.a.b.a	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b.e #23	ENSGT00940000161969.q	ENSGT00940000159748	ENSGT00940000160369.l	ENSGT00950000182945.b.a.a.a.b.b.c.a	ENSGT00940000165571	ENSGT00940000165405.i.a	ENSGT00940000165541.e.b	ENSGT00940000157504.d	ENSGT00390000007725.A.b.d.g	ENSGT00390000010372.p	ENSGT00940000158688.c.d.a	ENSGT00940000159534.e.d	ENSGT00550000074828.b.f	ENSGT00940000162211
Oncorhynchus	ANCESTRAL SPECIES	20	ENSGT00950000183062.a.b.b.b #27	ENSGT00940000159667.a.e	ENSGT00940000159855	ENSGT01030000234637.b.c.g.g.a	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00940000159128	ENSGT00940000161383.d.b.a.b #33	ENSGT00530000063687.b.b.b.q #37	ENSGT00390000003348	ENSGT00940000159438.db.a.b	ENSGT00940000157503.i.a.f	ENSGT00940000158685.ib	ENSGT00940000169444	ENSGT00940000154102.b.a.b.a	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b.e #23	ENSGT00940000161969.q	ENSGT00940000159748	ENSGT00940000165571	ENSGT00940000165405.i.a.c	ENSGT00940000165541.e.b	ENSGT00940000158152.a.b	ENSGT00940000157504.c.a.c	ENSGT00390000007725.A.b.d.g	ENSGT00390000010372.p	ENSGT00940000158688.c.d.a	ENSGT00940000159534.e.d	ENSGT00550000074828.b.f	ENSGT00940000162211	ENSGT00940000157365
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000069858	ENSOMYG00000064280	ENSOMYG00000053887	ENSOMYG00000077797	cacna1fb (ENSOMYG00000072680)	ENSOMYG00000005037	ENSOMYG00000067666	ENSOMYG00000052768	cdk20 (ENSOMYG00000005019)	ENSOMYG00000004957 #33	mecp2 (ENSOMYG00000004898) #37	ENSOMYG00000004820	ENSOMYG00000053748	tfe3a (ENSOMYG00000061427)	ENSOMYG00000058619	abcd1 (ENSOMYG00000005141) #22	ENSOMYG00000055007 #23	ENSOMYG00000048100	ENSOMYG00000071167	ENSOMYG00000005652	ENSOMYG00000005600	ENSOMYG00000062107	ENSOMYG00000050570	ENSOMYG00000001446	ENSOMYG00000054478	ENSOMYG00000069993	ENSOMYG00000005309	ENSOMYG00000061902	TSHB (ENSOMYG00000005878)	ENSOMYG00000066198	NGF (ENSOMYG00000012424)
Oncorhynchus_a	ANCESTRAL SPECIES	7	ENSGT00950000183062.a.b.b.b #27	ENSGT00940000159667.a.e	ENSGT00940000159855	ENSGT01030000234637.b.c.g.g.a	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00940000159128	ENSGT00940000161383.d.b.a.b #33	ENSGT00530000063687.b.b.b.q #37	ENSGT00390000003348	ENSGT00940000159438.db.a.b	ENSGT00940000157503.i.a.f	ENSGT00940000158685.ib	ENSGT00940000169444	ENSGT00940000154102.b.a.b.a	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b.e #23	ENSGT00940000161969.q	ENSGT00940000165571	ENSGT00940000165405.i.a.c	ENSGT00940000158152.a.b	ENSGT00940000157504.c.a.c	ENSGT00390000007725.A.b.d.g	ENSGT00390000010372.p	ENSGT00940000158688.c.d.a	ENSGT00940000159534.e.d	ENSGT00550000074828.b.f	ENSGT00940000162211	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000155067.b.b
Coho salmon	MODERN SPECIES	8	PDZD4 (ENSOKIG00005005201) #27	IQSEC2 (ENSOKIG00005005217)	ENSOKIG00005005227	sypa (ENSOKIG00005005240)	ENSOKIG00005005253	HDAC6 (ENSOKIG00005005315)	cdk20 (ENSOKIG00005006317)	HCFC1 (ENSOKIG00005006428) #33	mecp2 (ENSOKIG00005006465) #37	ENSOKIG00005006475	FGD1 (ENSOKIG00005006502)	tfe3a (ENSOKIG00005006585)	zgc:113363 (ENSOKIG00005006669)	ENSOKIG00005006680	ENSOKIG00005006718	abcd1 (ENSOKIG00005006775) #22	ENSOKIG00005007380 #23	tktb (ENSOKIG00005009111)	ENSOKIG00005009315	ENSOKIG00005009325	ENSOKIG00005009327	ENSOKIG00005009337	ENSOKIG00005009339	ENSOKIG00005009352	arhgef3l (ENSOKIG00005009365)	uba1 (ENSOKIG00005009549)	ENSOKIG00005012447	ENSOKIG00005012460	ENSOKIG00005012485	TSHB (ENSOKIG00005012505)	ENSOKIG00005012583
Chinook salmon	MODERN SPECIES	20	tsen15 (ENSOTSG00005041863)	ENSOTSG00005041861	sec22ba (ENSOTSG00005041860)	slc35a3b (ENSOTSG00005041855)	ENSOTSG00005041852	cmpk (ENSOTSG00005041843)	bcl6ab (ENSOTSG00005041841)	ENSOTSG00005041840	ENSOTSG00005041838	ENSOTSG00005041836	ENSOTSG00005041788	ENSOTSG00005041785	ENSOTSG00005041774	AMOTL2 (ENSOTSG00005041772)	ENSOTSG00005041771	abcd1 (ENSOTSG00005041769) #22	ENSOTSG00005041768	rab6bb (ENSOTSG00005041764)	KIF1A (ENSOTSG00005041269)	thap4 (ENSOTSG00005041257)	bokb (ENSOTSG00005041256)	stk25b (ENSOTSG00005039123)	septin2 (ENSOTSG00005039064)	SOX14 (ENSOTSG00005039058)	CLDN18 (ENSOTSG00005039055)	selenof (ENSOTSG00005039052)	hs2st1a (ENSOTSG00005039051)	PKN2 (ENSOTSG00005031999)	gtf2b (ENSOTSG00005031982)	ENSOTSG00005031981	ENSOTSG00005031979
Salmo	ANCESTRAL SPECIES	16	ENSGT00950000183062.a.b.b.b #27	ENSGT00940000159855	ENSGT01030000234637.b.c.g.g.a	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00940000159128	ENSGT00940000167532	ENSGT00940000161383.d.b.a.b #33	ENSGT00530000063687.b.b.b.q #37	ENSGT00390000003348	ENSGT00940000159438.db.b	ENSGT00940000157503.i.a.f	ENSGT00940000158685.ib	ENSGT00940000169444	ENSGT00940000154102.b.a.b.a	ENSGT00950000182955.a.b.a #22	ENSGT01020000230394.e.a.a.b.a.b.e #23	ENSGT00940000161969.q	ENSGT00940000159748	ENSGT00940000160369.l.a	ENSGT00950000182945.b.a.a.a.b.b.c.a	ENSGT00940000165571	ENSGT00940000165405.i.a	ENSGT00940000165541.e.b	ENSGT00940000165158.a.a	ENSGT00940000158152.a.b	ENSGT00940000157504.c.a.c	ENSGT00390000007725.A.b.d.g	ENSGT00390000010372.p	ENSGT00940000158688.c.d.a	ENSGT00940000159534.e.d
River trout	MODERN SPECIES	20	ENSSTUG00000010803	sypa (ENSSTUG00000010775)	ENSSTUG00000010770	ENSSTUG00000010493	cdk20 (ENSSTUG00000010459)	hcfc1b (ENSSTUG00000010191)	mecp2 (ENSSTUG00000010178) #37	ENSSTUG00000010152	FGD1 (ENSSTUG00000009868)	tfe3a (ENSSTUG00000009833)	ENSSTUG00000009827	zgc:113363 (ENSSTUG00000009818)	ENSSTUG00000009814	ENSSTUG00000009737	ENSSTUG00000009695	abcd1 (ENSSTUG00000009273) #22	ENSSTUG00000008731 #23	tktb (ENSSTUG00000007986)	lrrc23 (ENSSTUG00000007951)	ENSSTUG00000007936	rhoac (ENSSTUG00000007921)	arhgef3l (ENSSTUG00000007901)	uba1 (ENSSTUG00000006950)	ENSSTUG00000006927	ENSSTUG00000006900	ENSSTUG00000006887	ENSSTUG00000006878	TSHB (ENSSTUG00000006861)	ENSSTUG00000006859	ENSSTUG00000006854	ngfa (ENSSTUG00000006845)
Atlantic salmon	MODERN SPECIES	6	syp (ENSSSAG00000047322)	ENSSSAG00000047337	ENSSSAG00000046878	ENSSSAG00000046839	ENSSSAG00000046394 #33	mecp2 (ENSSSAG00000046352) #37	ENSSSAG00000046323	ENSSSAG00000085513	ENSSSAG00000116135	tfe3a (ENSSSAG00000056524)	ENSSSAG00000084733	zgc:113363 (ENSSSAG00000081927)	ENSSSAG00000106351	ENSSSAG00000048105	ENSSSAG00000048040	abcd1 (ENSSSAG00000047976) #22	ENSSSAG00000106860	ENSSSAG00000095322	ENSSSAG00000048260	ENSSSAG00000048162	ENSSSAG00000118767	ENSSSAG00000108197	ENSSSAG00000116020	arhgef3l (ENSSSAG00000083682)	ENSSSAG00000095191	ENSSSAG00000097310	ENSSSAG00000095161	ENSSSAG00000097464	ENSSSAG00000101085	ENSSSAG00000039599	ENSSSAG00000116252
Huchen	MODERN SPECIES	6591																abcd1 (ENSHHUG00000006583) #22	ENSHHUG00000006573
Northern pike	MODERN SPECIES	11	ENSELUG00000027086	ENSELUG00000018589	HDAC6 (ENSELUG00000018637)	ENSELUG00000018811	cdk20 (ENSELUG00000018935)	HCFC1 (ENSELUG00000019004) #33	IRAK1 (ENSELUG00000019026) #34	mecp2 (ENSELUG00000019038) #37	ENSELUG00000019047	FGD1 (ENSELUG00000019088)	tfe3a (ENSELUG00000019126)	zgc:113363 (ENSELUG00000019149)	cxxc1a (ENSELUG00000001459)	ENSELUG00000033414	ENSELUG00000019198	abcd1 (ENSELUG00000019257) #22	ENSELUG00000000854 #23	ENSELUG00000033316	klk6 (ENSELUG00000019538)	ENSELUG00000019590	uba1 (ENSELUG00000019644)	arhgef3l (ENSELUG00000019695)	ENSELUG00000019759	ENSELUG00000001193	ENSELUG00000019845	lrrc23 (ENSELUG00000019879)	tktb (ENSELUG00000019943)	ENSELUG00000022041	ENSELUG00000021982	ENSELUG00000024835	KCNA10 (ENSELUG00000021957)
Spotted gar	MODERN SPECIES	647	cdk20 (ENSLOCG00000014752)	si:dkey-13a21.4 (ENSLOCG00000014749)	HCFC1 (ENSLOCG00000014733) #33	TMEM187 (ENSLOCG00000017979)	IRAK1 (ENSLOCG00000014730) #34	mecp2 (ENSLOCG00000014725) #37	opn1sw2 (ENSLOCG00000014721)	opn1lw1 (ENSLOCG00000014714)	ENSLOCG00000014710	gnl3l (ENSLOCG00000014702)	FGD1 (ENSLOCG00000014698)	tfe3a (ENSLOCG00000014691)	zgc:113363 (ENSLOCG00000014689)	cxxc1a (ENSLOCG00000014684)	ENSLOCG00000014682	abcd1 (ENSLOCG00000014676) #22	PLXNB3 (ENSLOCG00000014660) #23	SRPK3 (ENSLOCG00000014658) #24	ENSLOCG00000014656	IQSEC2 (ENSLOCG00000014645)	ENSLOCG00000014644	ENSLOCG00000014641	ENSLOCG00000014638	idh3g (ENSLOCG00000014632) #25	plxna3 (ENSLOCG00000014612)	PNCK (ENSLOCG00000014603) #19	slc6a8 (ENSLOCG00000014590) #20	bcap31 (ENSLOCG00000014585) #21	slc35a2 (ENSLOCG00000014583)	pim2 (ENSLOCG00000014577)	otud5a (ENSLOCG00000014573)
Reedfish	MODERN SPECIES	2	gata1a (ENSECRG00000007886)	cdk20 (ENSECRG00000007865)	si:dkey-13a21.4 (ENSECRG00000007855)	HCFC1 (ENSECRG00000007822) #33	TMEM187 (ENSECRG00000007796)	ENSECRG00000007782	IRAK1 (ENSECRG00000007760) #34	mecp2 (ENSECRG00000007685) #37	gnl3l (ENSECRG00000007644)	FGD1 (ENSECRG00000007611)	ENSECRG00000007589	cxxc1a (ENSECRG00000020205)	ENSECRG00000020187	tfe3a (ENSECRG00000020165)	ccdc120b (ENSECRG00000020130)	abcd1 (ENSECRG00000020092) #22	ENSECRG00000020026 #23	SRPK3 (ENSECRG00000019992) #24	opn1lw1 (ENSECRG00000019957)	opn1sw2 (ENSECRG00000019604)	suv39h1b (ENSECRG00000019506)	ENSECRG00000019467	gpr173 (ENSECRG00000019448)	ENSECRG00000019430	ENSECRG00000019376	ccdc22 (ENSECRG00000019320)	ENSECRG00000019275	wasb (ENSECRG00000019242)	tspy (ENSECRG00000019185)	sema3ga (ENSECRG00000019132)	ENSECRG00000019105
Elephant shark	MODERN SPECIES	1398																ENSCMIG00000002204 #22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.a #22
Lamprey	MODERN SPECIES	3958																ABCD1 (ENSPMAG00000009278) #22
Hagfish	MODERN SPECIES	1288	ENSEBUG00000008444	ENSEBUG00000004958	ENSEBUG00000002121 #20	ENSEBUG00000001270	ENSEBUG00000000863 #20	ENSEBUG00000003066	ENSEBUG00000003574	ENSEBUG00000011068	dnajc2 (ENSEBUG00000009150)	CERK (ENSEBUG00000001473)	G6PD (ENSEBUG00000006426)	ENSEBUG00000001180	ENSEBUG00000012223	trabd (ENSEBUG00000011588)	ENSEBUG00000009583	abcd1 (ENSEBUG00000016967) #22	amdhd1 (ENSEBUG00000012508)	ENSEBUG00000013442	htr5aa (ENSEBUG00000009747)	ENSEBUG00000001262	ENSEBUG00000001429	ENSEBUG00000012715	ENSEBUG00000002886	ENSEBUG00000005516	ENSEBUG00000002450	prkag1 (ENSEBUG00000016271)	ENSEBUG00000002810	ENSEBUG00000003669	ENSEBUG00000011733	ENSEBUG00000016351	ENSEBUG00000008642
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.b ##22
Gnathostomata	ANCESTRAL SPECIES	506																ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323
Euteleostomi	ANCESTRAL SPECIES	71					ENSGT01070000253775.a.d.a.a.a.b	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00390000011863.d ##21	ENSGT00510000047522	ENSGT00550000074844	ENSGT00940000156003	ENSGT00740000116347	ENSGT00940000162514	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00940000165678	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B
Sarcopterygii	ANCESTRAL SPECIES	31	ENSGT00390000004586	ENSGT00940000166951	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00510000047522	ENSGT00550000074844	ENSGT00940000156003	ENSGT00740000116347	ENSGT00940000162514	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00940000165678	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT01030000240148	ENSGT00390000000950.c.a	ENSGT00530000063808.a	ENSGT00530000063435.a	ENSGT00940000156976	ENSGT00940000159840
Tetrapoda	ANCESTRAL SPECIES	5	ENSGT00390000004586	ENSGT00940000166951	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00740000116347	ENSGT00940000162514	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Amniota	ANCESTRAL SPECIES	5	ENSGT00390000004586	ENSGT00940000166951	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00740000116347	ENSGT00940000162514	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000168034	ENSGT01030000240148	ENSGT00390000000950.c.a	ENSGT00530000063808.a	ENSGT00530000063435.a	ENSGT00940000156976
Mammalia	ANCESTRAL SPECIES	8	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000163501
Theria	ANCESTRAL SPECIES	2	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000163501	ENSGT00950000183775
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000163501	ENSGT00940000153678.a.a
Atlantogenata	ANCESTRAL SPECIES	5	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Xenarthra	ANCESTRAL SPECIES	1199														ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a
Sloth	MODERN SPECIES	6080															C12orf40 (ENSCHOG00000003181)	ABCD2 (ENSCHOG00000003173) ##22
Armadillo	MODERN SPECIES	2813														SLC2A13 (ENSDNOG00000040772)	C12orf40 (ENSDNOG00000005525)	ABCD2 (ENSDNOG00000049146) ##22	ENSDNOG00000040272	KIF21A (ENSDNOG00000016343)	ENSDNOG00000035854	ENSDNOG00000034525	ENSDNOG00000035447
Afrotheria	ANCESTRAL SPECIES	25	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Afrotheria_a	ANCESTRAL SPECIES	24	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Elephant	MODERN SPECIES	196	PRICKLE1 (ENSLAFG00000001175)	PPHLN1 (ENSLAFG00000001173)	ZCRB1 (ENSLAFG00000008847)	YAF2 (ENSLAFG00000014339)	GXYLT1 (ENSLAFG00000022750)	PDZRN4 (ENSLAFG00000004186) ##27	CNTN1 (ENSLAFG00000009124)	ENSLAFG00000026520	ENSLAFG00000030104	ENSLAFG00000030897	ENSLAFG00000026139	ENSLAFG00000016598	SLC2A13 (ENSLAFG00000003517)	C12orf40 (ENSLAFG00000003513)	ENSLAFG00000027192	ABCD2 (ENSLAFG00000003511) ##22	KIF21A (ENSLAFG00000011155)	CPNE8 (ENSLAFG00000005722)	ENSLAFG00000000428	SYT10 (ENSLAFG00000005907)	PKP2 (ENSLAFG00000027150)	YARS2 (ENSLAFG00000017360)	DNM1L (ENSLAFG00000017348)	FGD4 (ENSLAFG00000016591)	BICD1 (ENSLAFG00000015224)	RESF1 (ENSLAFG00000001210)	AMN1 (ENSLAFG00000012726)	ETFBKMT (ENSLAFG00000028045)	DENND5B (ENSLAFG00000013024)	SINHCAF (ENSLAFG00000001494)	CAPRIN2 (ENSLAFG00000012893)
Hyrax	MODERN SPECIES	5640															ENSPCAG00000000534	ABCD2 (ENSPCAG00000000510) ##22
Tenrec	MODERN SPECIES	6658																ABCD2 (ENSETEG00000011207) ##22
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.b ##22
Common shrew	MODERN SPECIES	5327																ENSSARG00000010028 ##22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT01100000263511.b.a.b.a.b
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT01100000263511.b.a.b.a.b.a.b.a	ENSGT00940000163501
Suina	ANCESTRAL SPECIES	4	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00940000161720	ENSGT00940000159668	ENSGT00510000049725	ENSGT00940000155580.b.b	ENSGT00390000002868	ENSGT00390000015552	ENSGT00390000002730.c.a	ENSGT00940000160360	ENSGT00950000183113.b.b	ENSGT00390000018051	ENSGT00940000154822.a	ENSGT00940000159018	ENSGT00940000156127
Pig	MODERN SPECIES	13	IRAK4 (ENSSSCG00000000799)	PUS7L (ENSSSCG00000000800)	ADAMTS20 (ENSSSCG00000000795)	PRICKLE1 (ENSSSCG00000034491)	ZCRB1 (ENSSSCG00000034066)	PPHLN1 (ENSSSCG00000000793)	YAF2 (ENSSSCG00000031775)	GXYLT1 (ENSSSCG00000031701)	PDZRN4 (ENSSSCG00000000791) ##27	CNTN1 (ENSSSCG00000000789)	ENSSSCG00000061721	LRRK2 (ENSSSCG00000000784)	ENSSSCG00000053020	SLC2A13 (ENSSSCG00000000783)	C12orf40 (ENSSSCG00000000782)	ABCD2 (ENSSSCG00000000781) ##22	KIF21A (ENSSSCG00000000779)	CPNE8 (ENSSSCG00000000778)	ENSSSCG00000000777	USP18 (ENSSSCG00000000774)	ENSSSCG00000050087	TUBA8 (ENSSSCG00000060615)	PEX26 (ENSSSCG00000027190)	MICAL3 (ENSSSCG00000000770)	BID (ENSSSCG00000000769)	BCL2L13 (ENSSSCG00000040373)	ENSSSCG00000054115	CECR2 (ENSSSCG00000000766)	ADA2 (ENSSSCG00000035218)	HDHD5 (ENSSSCG00000000764)	IL17RA (ENSSSCG00000000765)
Chacoan peccary	MODERN SPECIES	902												LRRK2 (ENSCWAG00000011114)	SLC2A13 (ENSCWAG00000011495)	ENSCWAG00000011612	C12orf40 (ENSCWAG00000011637)	ABCD2 (ENSCWAG00000011914) ##22	KIF21A (ENSCWAG00000012128)	CPNE8 (ENSCWAG00000014240)	USP18 (ENSCWAG00000014413)	TUBA8 (ENSCWAG00000014534)	PEX26 (ENSCWAG00000014645)	MICAL3 (ENSCWAG00000014707)	BID (ENSCWAG00000014878)	BCL2L13 (ENSCWAG00000014939)	ENSCWAG00000015135	ATP6V1E1 (ENSCWAG00000015171)	CECR2 (ENSCWAG00000015357)	ADA2 (ENSCWAG00000015997)	HDHD5 (ENSCWAG00000016173)	ENSCWAG00000016205	IL17RA (ENSCWAG00000016229)
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT01100000263511.b.a.b.a.b.a.b.a	ENSGT00940000163501
Camelidae	ANCESTRAL SPECIES	27	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679
Arabian camel	MODERN SPECIES	3	TWF1 (ENSCDRG00005003599)	IRAK4 (ENSCDRG00005003677)	PUS7L (ENSCDRG00005003762)	ADAMTS20 (ENSCDRG00005003815)	ENSCDRG00005004080	PRICKLE1 (ENSCDRG00005004121)	PPHLN1 (ENSCDRG00005004198)	ZCRB1 (ENSCDRG00005004526)	YAF2 (ENSCDRG00005004568)	GXYLT1 (ENSCDRG00005004733)	PDZRN4 (ENSCDRG00005004870) ##27	CNTN1 (ENSCDRG00005004942)	LRRK2 (ENSCDRG00005005207)	SLC2A13 (ENSCDRG00005005320)	C12orf40 (ENSCDRG00005005452)	ABCD2 (ENSCDRG00005005569) ##22	KIF21A (ENSCDRG00005005694)	CPNE8 (ENSCDRG00005008197)	ENSCDRG00005008351	AVPR1A (ENSCDRG00005008377) ##29	RXYLT1 (ENSCDRG00005008415)	SRGAP1 (ENSCDRG00005008497) ##30	KICS2 (ENSCDRG00005008780)	C12orf56 (ENSCDRG00005008916)	XPOT (ENSCDRG00005009292)	TBK1 (ENSCDRG00005009688)	RASSF3 (ENSCDRG00005010057)	GNS (ENSCDRG00005010193)	TBC1D30 (ENSCDRG00005010744)	WIF1 (ENSCDRG00005011065)	LEMD3 (ENSCDRG00005011147)
Alpaca	MODERN SPECIES	719										PDZRN4 (ENSVPAG00000009179) ##27	CNTN1 (ENSVPAG00000009178)	ENSVPAG00000009176	LRRK2 (ENSVPAG00000009174)	SLC2A13 (ENSVPAG00000009173)	C12orf40 (ENSVPAG00000009172)	ABCD2 (ENSVPAG00000009171) ##22	KIF21A (ENSVPAG00000009169)	CPNE8 (ENSVPAG00000009168)
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT01100000263511.b.a.b.a.b.a.b.a	ENSGT00940000163501
Cetacea	ANCESTRAL SPECIES	8	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT01000000222123	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT01000000222123	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT01000000222123	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Dolphin	MODERN SPECIES	617															C12orf40 (ENSTTRG00000012836)	ABCD2 (ENSTTRG00000012835) ##22	KIF21A (ENSTTRG00000012834)
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00530000063554.b	ENSGT00940000153783.b.b.c.a.b.d	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT01000000222123	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00390000013287.s.c	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00730000111019.x.a	ENSGT00940000153678.a.a
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00530000063554.b	ENSGT00940000153783.b.b.c.a.b.d	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT01000000222123	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00390000013287.s.c	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00940000167085.b.b	ENSGT00730000111305	ENSGT00940000162982	ENSGT00730000111019.w.b
Narwhal	MODERN SPECIES	313	ENSMMNG00015018699	ADAMTS20 (ENSMMNG00015018580)	PRICKLE1 (ENSMMNG00015018440)	ZCRB1 (ENSMMNG00015018409)	PPHLN1 (ENSMMNG00015018216)	YAF2 (ENSMMNG00015018083)	GXYLT1 (ENSMMNG00015018013)	ENSMMNG00015017975	PDZRN4 (ENSMMNG00015017845) ##27	CNTN1 (ENSMMNG00015017670)	ENSMMNG00015017543	LRRK2 (ENSMMNG00015017453)	ENSMMNG00015017414	SLC2A13 (ENSMMNG00015017375)	C12orf40 (ENSMMNG00015017232)	ABCD2 (ENSMMNG00015017178) ##22	KIF21A (ENSMMNG00015017028)	ENSMMNG00015016955	CPNE8 (ENSMMNG00015016830)	ENSMMNG00015016710	SYT10 (ENSMMNG00015016656)	PKP2 (ENSMMNG00015016629)	YARS2 (ENSMMNG00015016608)	DNM1L (ENSMMNG00015016298)	ENSMMNG00015016149	ENSMMNG00015016115	FGD4 (ENSMMNG00015015901)	ENSMMNG00015019390	BICD1 (ENSMMNG00015019343)	RESF1 (ENSMMNG00015019295)	ENSMMNG00015019245
Beluga whale	MODERN SPECIES	39	IRAK4 (ENSDLEG00000006336)	PUS7L (ENSDLEG00000006346)	ENSDLEG00000006353	ADAMTS20 (ENSDLEG00000006365)	PRICKLE1 (ENSDLEG00000006418)	PPHLN1 (ENSDLEG00000006424)	ZCRB1 (ENSDLEG00000006437)	YAF2 (ENSDLEG00000006448)	GXYLT1 (ENSDLEG00000006460)	ENSDLEG00000006483	PDZRN4 (ENSDLEG00000006494) ##27	CNTN1 (ENSDLEG00000006519)	LRRK2 (ENSDLEG00000006564)	SLC2A13 (ENSDLEG00000006590)	ENSDLEG00000006597	ABCD2 (ENSDLEG00000006606) ##22	KIF21A (ENSDLEG00000006688)	KLHL1 (ENSDLEG00000006923)	ENSDLEG00000006929	ENSDLEG00000006930	ENSDLEG00000006931	ENSDLEG00000006933	ENSDLEG00000006939
Vaquita	MODERN SPECIES	1	ENSPSNG00000019362	ADAMTS20 (ENSPSNG00000019420)	PRICKLE1 (ENSPSNG00000019658)	PPHLN1 (ENSPSNG00000019732)	ZCRB1 (ENSPSNG00000019891)	YAF2 (ENSPSNG00000019968)	GXYLT1 (ENSPSNG00000020053)	ENSPSNG00000020133	PDZRN4 (ENSPSNG00000020173) ##27	CNTN1 (ENSPSNG00000020359)	ENSPSNG00000020747	LRRK2 (ENSPSNG00000020867)	SLC2A13 (ENSPSNG00000020932)	C12orf40 (ENSPSNG00000020991)	ENSPSNG00000021130 ##18	ABCD2 (ENSPSNG00000021149) ##22	KIF21A (ENSPSNG00000021250)	ENSPSNG00000021336	ENSPSNG00000021353	CPNE8 (ENSPSNG00000004195)	ENSPSNG00000004229	SYT10 (ENSPSNG00000004264)	PKP2 (ENSPSNG00000004294)	ENSPSNG00000004323	YARS2 (ENSPSNG00000004339)	DNM1L (ENSPSNG00000004469)	ENSPSNG00000004600	FGD4 (ENSPSNG00000004764)	ENSPSNG00000004851	ENSPSNG00000004862	BICD1 (ENSPSNG00000004903)
Sperm whale	MODERN SPECIES	17	IRAK4 (ENSPCTG00005016513)	PUS7L (ENSPCTG00005016614)	ADAMTS20 (ENSPCTG00005016684)	PRICKLE1 (ENSPCTG00005016771)	PPHLN1 (ENSPCTG00005016859)	ZCRB1 (ENSPCTG00005017161)	YAF2 (ENSPCTG00005017243)	GXYLT1 (ENSPCTG00005017447)	ENSPCTG00005017586	PDZRN4 (ENSPCTG00005017632) ##27	CNTN1 (ENSPCTG00005017912)	LRRK2 (ENSPCTG00005018602)	ENSPCTG00005018859	SLC2A13 (ENSPCTG00005018911)	ENSPCTG00005019220 ##18	ABCD2 (ENSPCTG00005019234) ##22	KIF21A (ENSPCTG00005019438)	CPNE8 (ENSPCTG00005000264)
Blue whale	MODERN SPECIES	1	ADAMTS20 (ENSBMSG00010014840)	PRICKLE1 (ENSBMSG00010014784)	ENSBMSG00010014759	ENSBMSG00010014741	PPHLN1 (ENSBMSG00010014465)	YAF2 (ENSBMSG00010014276)	GXYLT1 (ENSBMSG00010014180)	ENSBMSG00010014133	PDZRN4 (ENSBMSG00010013907) ##27	CNTN1 (ENSBMSG00010013705)	ENSBMSG00010013649	ENSBMSG00010013608	ENSBMSG00010013596	SLC2A13 (ENSBMSG00010013587)	C12orf40 (ENSBMSG00010013572)	ABCD2 (ENSBMSG00010013555) ##22	ENSBMSG00010013546	KIF21A (ENSBMSG00010013487)	CPNE8 (ENSBMSG00010013374)	ENSBMSG00010013354	ENSBMSG00010013322	SYT10 (ENSBMSG00010013303)	PKP2 (ENSBMSG00010013279)	ENSBMSG00010013263	ENSBMSG00010013250	DNM1L (ENSBMSG00010013139)	FGD4 (ENSBMSG00010012969)	ENSBMSG00010012943	BICD1 (ENSBMSG00010012881)	RESF1 (ENSBMSG00010012861)	ENSBMSG00010012846
Pecora	ANCESTRAL SPECIES	3	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00940000157212.B	ENSGT00940000156088	ENSGT00950000183039.A	ENSGT00390000001285	ENSGT00530000063626.b	ENSGT00940000157998	ENSGT00940000157777	ENSGT00940000155040.b	ENSGT00550000074930	ENSGT00940000157033	ENSGT00940000155811	ENSGT00940000153832.f.x.b.a	ENSGT00940000153832.f.y.d.a.a
Percora_a	ANCESTRAL SPECIES	3	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00940000157212.B	ENSGT00940000156088	ENSGT00950000183039.A	ENSGT00390000001285	ENSGT00530000063626.b	ENSGT00940000157998	ENSGT00940000157777	ENSGT00940000155040.b	ENSGT00550000074930	ENSGT00940000157033	ENSGT00940000155811	ENSGT00940000153832.f.x.b.a	ENSGT00940000153832.f.y.d.a.a
Bovidae	ANCESTRAL SPECIES	3	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00550000074846.`b	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00940000157212.B	ENSGT00940000156088	ENSGT00950000183039.A	ENSGT00390000001285	ENSGT00530000063626.b	ENSGT00940000157998	ENSGT00940000157777	ENSGT00940000155040.b	ENSGT00550000074930	ENSGT00940000157033	ENSGT00940000155811	ENSGT00940000153832.f.x.b.a
Bovinae	ANCESTRAL SPECIES	17	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000155280.b	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00550000074846.`b	ENSGT00940000155323.a	ENSGT00940000153112.D.c.a	ENSGT00940000159679	ENSGT00940000157212.B	ENSGT00940000156088	ENSGT00950000183039.A	ENSGT00530000063539.a.v	ENSGT00390000001285	ENSGT00530000063626.b	ENSGT00940000157998	ENSGT00940000157777	ENSGT00940000155040.b	ENSGT00550000074930	ENSGT00940000157033
Bos	ANCESTRAL SPECIES	2	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000155280.b	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00550000074846.`b	ENSGT00940000155323.a	ENSGT00940000153112.D.c.a	ENSGT00940000159679	ENSGT00940000157212.B	ENSGT00940000156088	ENSGT00950000183039.A	ENSGT00530000063539.a.v	ENSGT00390000001285	ENSGT00530000063626.b	ENSGT00940000157998	ENSGT00940000157777	ENSGT00940000155040.b	ENSGT00550000074930	ENSGT00940000157033
Bos_b	ANCESTRAL SPECIES	4	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000155280.b	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000153112.D.c.a	ENSGT00940000159679	ENSGT00940000157212.B	ENSGT00940000156088	ENSGT00950000183039.A	ENSGT00530000063539.a.v	ENSGT00390000001285	ENSGT00530000063626.b	ENSGT00940000157998	ENSGT00940000157777	ENSGT00940000155040.b	ENSGT00550000074930	ENSGT00940000157033	ENSGT00940000155811
Cow	MODERN SPECIES	24	TMEM117 (ENSBTAG00000032148)	TWF1 (ENSBTAG00000020938)	IRAK4 (ENSBTAG00000021105)	PUS7L (ENSBTAG00000004718)	ADAMTS20 (ENSBTAG00000000395)	ENSBTAG00000045574	PRICKLE1 (ENSBTAG00000008596)	PPHLN1 (ENSBTAG00000008595)	ZCRB1 (ENSBTAG00000019119)	YAF2 (ENSBTAG00000015025)	GXYLT1 (ENSBTAG00000015024)	PDZRN4 (ENSBTAG00000012624) ##27	CNTN1 (ENSBTAG00000020679)	LRRK2 (ENSBTAG00000016260)	SLC2A13 (ENSBTAG00000043962)	ABCD2 (ENSBTAG00000038043) ##22	KIF21A (ENSBTAG00000004832)	ENSBTAG00000048924	CPNE8 (ENSBTAG00000020914)	PTPRR (ENSBTAG00000015311)	PTPRB (ENSBTAG00000015296)	KCNMB4 (ENSBTAG00000003749)	ENSBTAG00000054094	CNOT2 (ENSBTAG00000003748)	MYRFL (ENSBTAG00000014829)	RAB3IP (ENSBTAG00000031950)	BEST3 (ENSBTAG00000002931)	LRRC10 (ENSBTAG00000019157)	CCT2 (ENSBTAG00000019156)	FRS2 (ENSBTAG00000019155)	YEATS4 (ENSBTAG00000002256)
Hybrid Bos Indicus	MODERN SPECIES	24	ADAMTS20 (ENSBIXG00005004224)	PRICKLE1 (ENSBIXG00005024889)	ENSBIXG00005024904	ENSBIXG00005024912	ENSBIXG00005024942	PPHLN1 (ENSBIXG00005025218)	YAF2 (ENSBIXG00005025330)	GXYLT1 (ENSBIXG00005025400)	ENSBIXG00005004328	PDZRN4 (ENSBIXG00005025496) ##27	CNTN1 (ENSBIXG00005026041)	ENSBIXG00005026161	ENSBIXG00005026174	LRRK2 (ENSBIXG00005026223)	SLC2A13 (ENSBIXG00005026266)	ABCD2 (ENSBIXG00005004493) ##22	KIF21A (ENSBIXG00005004515)	ENSBIXG00005026468	ENSBIXG00005026479	CPNE8 (ENSBIXG00005026517)	PTPRR (ENSBIXG00005004557)	PTPRB (ENSBIXG00005027925)	ENSBIXG00005028096	KCNMB4 (ENSBIXG00005028115)	CNOT2 (ENSBIXG00005028198)	MYRFL (ENSBIXG00005028334)	RAB3IP (ENSBIXG00005028623)	BEST3 (ENSBIXG00005028702)	LRRC10 (ENSBIXG00005028716)	CCT2 (ENSBIXG00005028786)	FRS2 (ENSBIXG00005028857)
Bos_a	ANCESTRAL SPECIES	3	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00550000074846.`b	ENSGT00940000155323.a	ENSGT00940000153298.m.a	ENSGT00940000159679	ENSGT00940000157212.B	ENSGT00940000156088	ENSGT00530000063539.a.v	ENSGT00950000183039.A	ENSGT00390000001285	ENSGT00530000063626.b	ENSGT00940000157998	ENSGT00940000157777	ENSGT00940000155040.b	ENSGT00550000074930	ENSGT00940000157033
Domestic yak	MODERN SPECIES	24	ENSBGRG00000018728	PRICKLE1 (ENSBGRG00000018642)	ENSBGRG00000018622	ENSBGRG00000018534	PPHLN1 (ENSBGRG00000017994)	YAF2 (ENSBGRG00000017721)	GXYLT1 (ENSBGRG00000017528)	PDZRN4 (ENSBGRG00000017386) ##27	ENSBGRG00000017368	CNTN1 (ENSBGRG00000016476)	ENSBGRG00000016370	ENSBGRG00000016248	LRRK2 (ENSBGRG00000015531)	SLC2A13 (ENSBGRG00000015360)	C12orf40 (ENSBGRG00000015186)	ABCD2 (ENSBGRG00000014998) ##22	KIF21A (ENSBGRG00000012509)	ENSBGRG00000012374	CPNE8 (ENSBGRG00000012044)	PTPRR (ENSBGRG00000011534)	PTPRB (ENSBGRG00000009450)	KCNMB4 (ENSBGRG00000009357)	CNOT2 (ENSBGRG00000009161)	MYRFL (ENSBGRG00000008765)	RAB3IP (ENSBGRG00000008446)	ENSBGRG00000008385	LRRC10 (ENSBGRG00000008156)	CCT2 (ENSBGRG00000007901)	FRS2 (ENSBGRG00000007705)	YEATS4 (ENSBGRG00000007500)	ENSBGRG00000007422
Wild yak	MODERN SPECIES	105																ABCD2 (ENSBMUG00000007818) ##22	ENSBMUG00000007814	KIF21A (ENSBMUG00000007479)	ENSBMUG00000007251	CPNE8 (ENSBMUG00000007243)	PTPRR (ENSBMUG00000007089)	PTPRB (ENSBMUG00000006695)	ENSBMUG00000006480	KCNMB4 (ENSBMUG00000006472)	CNOT2 (ENSBMUG00000006457)	ENSBMUG00000006433	ENSBMUG00000006429
American bison	MODERN SPECIES	3085														LRRK2 (ENSBBBG00000009130)	SLC2A13 (ENSBBBG00000003414)	ABCD2 (ENSBBBG00000014543) ##22	KIF21A (ENSBBBG00000014508)	ENSBBBG00000014256	CPNE8 (ENSBBBG00000014248)	PTPRR (ENSBBBG00000014214)	PTPRB (ENSBBBG00000003197)	KCNMB4 (ENSBBBG00000013994)	ENSBBBG00000013991	CNOT2 (ENSBBBG00000013982)	MYRFL (ENSBBBG00000013947)	RAB3IP (ENSBBBG00000003020)	BEST3 (ENSBBBG00000007980)	LRRC10 (ENSBBBG00000013788)	CCT2 (ENSBBBG00000013777)	FRS2 (ENSBBBG00000013749)	YEATS4 (ENSBBBG00000002926)
Caprinae	ANCESTRAL SPECIES		ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00390000010283.j	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00550000074846.`b	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00940000157212.B	ENSGT00940000156088	ENSGT00950000183039.A	ENSGT00390000001285	ENSGT00530000063626.b	ENSGT00940000157998	ENSGT00940000157777	ENSGT00940000155040.b	ENSGT00550000074930	ENSGT00940000157033	ENSGT00550000074956.x	ENSGT00940000155811
Goat	MODERN SPECIES	24	TWF1 (ENSCHIG00000023302)	IRAK4 (ENSCHIG00000017984)	PUS7L (ENSCHIG00000011359)	ADAMTS20 (ENSCHIG00000027074)	PRICKLE1 (ENSCHIG00000012537)	PPHLN1 (ENSCHIG00000010242)	ENSCHIG00000010312	YAF2 (ENSCHIG00000025941)	GXYLT1 (ENSCHIG00000020294)	PDZRN4 (ENSCHIG00000025687) ##27	ENSCHIG00000019720	CNTN1 (ENSCHIG00000016370)	LRRK2 (ENSCHIG00000021778)	SLC2A13 (ENSCHIG00000022531)	C12orf40 (ENSCHIG00000017658)	ABCD2 (ENSCHIG00000004597) ##22	ENSCHIG00000026353	KIF21A (ENSCHIG00000025333)	CPNE8 (ENSCHIG00000026435)	PTPRR (ENSCHIG00000022880)	PTPRB (ENSCHIG00000018145)	KCNMB4 (ENSCHIG00000008910)	ENSCHIG00000027135	CNOT2 (ENSCHIG00000021610)	MYRFL (ENSCHIG00000011630)	RAB3IP (ENSCHIG00000010199)	BEST3 (ENSCHIG00000016253)	LRRC10 (ENSCHIG00000004871)	CCT2 (ENSCHIG00000025742)	FRS2 (ENSCHIG00000010794)	ENSCHIG00000020628
Rambouillet Sheep	MODERN SPECIES	19	PRICKLE1 (ENSOARG00020006100)	ENSOARG00020006159	ENSOARG00020006505	YAF2 (ENSOARG00020006603)	GXYLT1 (ENSOARG00020006808)	ENSOARG00020006953	ENSOARG00020000258	PDZRN4 (ENSOARG00020000431) ##27	ENSOARG00020000481	CNTN1 (ENSOARG00020000548)	ENSOARG00020000675	ENSOARG00020000703	LRRK2 (ENSOARG00020000847)	SLC2A13 (ENSOARG00020001221)	ENSOARG00020001246	ABCD2 (ENSOARG00020001262) ##22	ENSOARG00020001418	ENSOARG00020002235	CPNE8 (ENSOARG00020002297)	PTPRR (ENSOARG00020002362)	KCNMB4 (ENSOARG00020002606)	ENSOARG00020002614	CNOT2 (ENSOARG00020002634)	MYRFL (ENSOARG00020002696)	RAB3IP (ENSOARG00020002771)	BEST3 (ENSOARG00020002837)	LRRC10 (ENSOARG00020002858)	ENSOARG00020002871	FRS2 (ENSOARG00020002887)	ENSOARG00020002901	YEATS4 (ENSOARG00020002909)
Siberian musk deer	MODERN SPECIES	1244															SLC2A13 (ENSMMSG00000022634)	ABCD2 (ENSMMSG00000022613) ##22	KIF21A (ENSMMSG00000022313)	ENSMMSG00000022246
Yarkand deer	MODERN SPECIES	22	ENSCHYG00000015901	PRICKLE1 (ENSCHYG00000015989)	ENSCHYG00000016150	ENSCHYG00000016495	YAF2 (ENSCHYG00000016606)	GXYLT1 (ENSCHYG00000016671)	ENSCHYG00000016816	PDZRN4 (ENSCHYG00000016912) ##27	CNTN1 (ENSCHYG00000017184)	ENSCHYG00000017658	ENSCHYG00000017757	LRRK2 (ENSCHYG00000017954)	SLC2A13 (ENSCHYG00000018595)	ENSCHYG00000018841	C12orf40 (ENSCHYG00000018928)	ABCD2 (ENSCHYG00000019036) ##22	KIF21A (ENSCHYG00000019430)	CPNE8 (ENSCHYG00000000063)	PTPRR (ENSCHYG00000000166)	PTPRB (ENSCHYG00000000385)	KCNMB4 (ENSCHYG00000000883)	CNOT2 (ENSCHYG00000000903)	MYRFL (ENSCHYG00000000962)	RAB3IP (ENSCHYG00000001137)	BEST3 (ENSCHYG00000001316)	LRRC10 (ENSCHYG00000001349)	CCT2 (ENSCHYG00000001369)	FRS2 (ENSCHYG00000001414)	YEATS4 (ENSCHYG00000001446)	ENSCHYG00000001489	ENSCHYG00000001663
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT01100000263511.b.a.b.a.b	ENSGT00940000153678.a.a
Carnivora	ANCESTRAL SPECIES	3	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Caniformia	ANCESTRAL SPECIES	19	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00390000016972.a.a.b.b.b.a.a	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Caniformia_b	ANCESTRAL SPECIES	17	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00390000016972.a.a.b.b.b.a.a	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Ursidae	ANCESTRAL SPECIES	25	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Ursus	ANCESTRAL SPECIES	127	ENSGT00950000183093.A.a	ENSGT00810000125439.B	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00950000182802.B.a.b	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899
American black bear	MODERN SPECIES	4072																ABCD2 (ENSUAMG00000027168) ##22	ENSUAMG00000027190
Polar bear	MODERN SPECIES	262	NELL2 (ENSUMAG00000024209)	TMEM117 (ENSUMAG00000024207)	TWF1 (ENSUMAG00000024206)	IRAK4 (ENSUMAG00000024205)	PUS7L (ENSUMAG00000024204)	ADAMTS20 (ENSUMAG00000024203)	PRICKLE1 (ENSUMAG00000024201)	PPHLN1 (ENSUMAG00000024200)	ZCRB1 (ENSUMAG00000024199)	ENSUMAG00000024198	PDZRN4 (ENSUMAG00000024193) ##27	CNTN1 (ENSUMAG00000024186)	ENSUMAG00000024185	LRRK2 (ENSUMAG00000024170)	SLC2A13 (ENSUMAG00000024152)	ABCD2 (ENSUMAG00000024150) ##22	KIF21A (ENSUMAG00000024138)	CPNE8 (ENSUMAG00000024135)	ENSUMAG00000024133	SYT10 (ENSUMAG00000024130)
Giant Panda	MODERN SPECIES	7	IRAK4 (ENSAMEG00000017312)	PUS7L (ENSAMEG00000017309)	ADAMTS20 (ENSAMEG00000017294)	PRICKLE1 (ENSAMEG00000013813)	ZCRB1 (ENSAMEG00000013837)	PPHLN1 (ENSAMEG00000013827)	ENSAMEG00000013846	GXYLT1 (ENSAMEG00000013852)	PDZRN4 (ENSAMEG00000010327) ##27	ENSAMEG00000010462	CNTN1 (ENSAMEG00000010347)	ENSAMEG00000015820	LRRK2 (ENSAMEG00000015799)	SLC2A13 (ENSAMEG00000015795)	C12orf40 (ENSAMEG00000015790)	ABCD2 (ENSAMEG00000005438) ##22	KIF21A (ENSAMEG00000012919)	CPNE8 (ENSAMEG00000010921)	ENSAMEG00000016237	SYT10 (ENSAMEG00000008875)	PKP2 (ENSAMEG00000008879)	YARS2 (ENSAMEG00000008909)	DNM1L (ENSAMEG00000008915)	FGD4 (ENSAMEG00000008976)	BICD1 (ENSAMEG00000009010)	RESF1 (ENSAMEG00000031298)	AMN1 (ENSAMEG00000009031)	ETFBKMT (ENSAMEG00000009039)	ENSAMEG00000009046	ENSAMEG00000009098	ENSAMEG00000009118
Mustelinae	ANCESTRAL SPECIES	93												ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000154651.j.a.b.a.b.b.b.a.c.a	ENSGT00940000157013	ENSGT00390000014507.a
American mink	MODERN SPECIES	271													LRRK2 (ENSNVIG00000012536)	SLC2A13 (ENSNVIG00000012583)	ENSNVIG00000012613	ABCD2 (ENSNVIG00000012639) ##22	KIF21A (ENSNVIG00000012677)	CPNE8 (ENSNVIG00000013038)	AG10A (ENSNVIG00000013073)
Ferret	MODERN SPECIES	327												ENSMPUG00000000241	LRRK2 (ENSMPUG00000000236)	SLC2A13 (ENSMPUG00000000234)	ENSMPUG00000000233	ABCD2 (ENSMPUG00000000232) ##22	KIF21A (ENSMPUG00000000229)	CPNE8 (ENSMPUG00000000228)	ENSMPUG00000000227	ENSMPUG00000000226	SYT10 (ENSMPUG00000000225)	ENSMPUG00000018808	PKP2 (ENSMPUG00000000224)	YARS2 (ENSMPUG00000000223)	DNM1L (ENSMPUG00000000222)	FGD4 (ENSMPUG00000000219)	BICD1 (ENSMPUG00000000217)	RESF1 (ENSMPUG00000000215)	AMN1 (ENSMPUG00000000213)	ETFBKMT (ENSMPUG00000000211)	ENSMPUG00000000207
Canidae	ANCESTRAL SPECIES	8	ENSGT00940000158636	ENSGT00390000016972.a.a.b.b.b.a.a	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00390000002868.d	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000005727.a.a	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c
Canis_lupus	ANCESTRAL SPECIES	14	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00390000016972.a.a.b.b.b.a.a	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00390000002868.d	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000005727.a.a	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504.c	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c
Dingo	MODERN SPECIES	295													LRRK2 (ENSCAFG00020019954)	ENSCAFG00020019936	SLC2A13 (ENSCAFG00020019911)	ABCD2 (ENSCAFG00020019872) ##22	KIF21A (ENSCAFG00020019794)	CPNE8 (ENSCAFG00020019768)	ENSCAFG00020019753	ENSCAFG00020019749	ENSCAFG00020019745	SYT10 (ENSCAFG00020019730)	PKP2 (ENSCAFG00020019715)	YARS2 (ENSCAFG00020019713)	DNM1L (ENSCAFG00020019688)	FGD4 (ENSCAFG00020019160)	BICD1 (ENSCAFG00020019123)	RESF1 (ENSCAFG00020019109)	ENSCAFG00020019093	ETFBKMT (ENSCAFG00020019091)	DENND5B (ENSCAFG00020019062)
Dog	MODERN SPECIES	19	PUS7L (ENSCAFG00845029329)	ADAMTS20 (ENSCAFG00845029722)	ENSCAFG00845030249	PRICKLE1 (ENSCAFG00845030270)	PPHLN1 (ENSCAFG00845030287)	ZCRB1 (ENSCAFG00845030305)	YAF2 (ENSCAFG00845030354)	GXYLT1 (ENSCAFG00845030404)	PDZRN4 (ENSCAFG00845030505) ##27	CNTN1 (ENSCAFG00845030614)	ENSCAFG00845030659	ENSCAFG00845030663	ENSCAFG00845030672	LRRK2 (ENSCAFG00845030702)	SLC2A13 (ENSCAFG00845030718)	ABCD2 (ENSCAFG00845030727) ##22	KIF21A (ENSCAFG00845030740)	CPNE8 (ENSCAFG00845030765)	ENSCAFG00845015861	ENSCAFG00845015956	ENSCAFG00845015975	SYT10 (ENSCAFG00845016015)	PKP2 (ENSCAFG00845016150)	YARS2 (ENSCAFG00845016379)	ENSCAFG00845016763	FGD4 (ENSCAFG00845017307)	FGD4 (ENSCAFG00845018139)	RESF1 (ENSCAFG00845018386)	AMN1 (ENSCAFG00845018483)	ETFBKMT (ENSCAFG00845018535)	DENND5B (ENSCAFG00845018635)
Red fox	MODERN SPECIES	32	TWF1 (ENSVVUG00000016986)	IRAK4 (ENSVVUG00000016976)	PUS7L (ENSVVUG00000016965)	ADAMTS20 (ENSVVUG00000016835)	PRICKLE1 (ENSVVUG00000016814)	ZCRB1 (ENSVVUG00000016801)	PPHLN1 (ENSVVUG00000016757)	YAF2 (ENSVVUG00000016743)	GXYLT1 (ENSVVUG00000016736)	PDZRN4 (ENSVVUG00000016724) ##27	CNTN1 (ENSVVUG00000016676)	ENSVVUG00000016661	LRRK2 (ENSVVUG00000016479)	SLC2A13 (ENSVVUG00000016437)	C12orf40 (ENSVVUG00000016414)	ABCD2 (ENSVVUG00000016394) ##22	KIF21A (ENSVVUG00000012982)	CPNE8 (ENSVVUG00000012781)	ENSVVUG00000012772	ENSVVUG00000012767	ENSVVUG00000012762	SYT10 (ENSVVUG00000012752)	PKP2 (ENSVVUG00000012741)	YARS2 (ENSVVUG00000012736)	DNM1L (ENSVVUG00000012652)	FGD4 (ENSVVUG00000012593)	BICD1 (ENSVVUG00000012549)	KIAA1551 (ENSVVUG00000012517)	AMN1 (ENSVVUG00000012511)	ETFBKMT (ENSVVUG00000012506)	DENND5B (ENSVVUG00000007385)
Felidae	ANCESTRAL SPECIES	2	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00980000202261	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000171909	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153414.A.t	ENSGT00940000153678.a.a	ENSGT00390000006485.c
Panthera	ANCESTRAL SPECIES		ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00980000202261	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000171909	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153414.A.t	ENSGT00940000153678.a.a	ENSGT00390000006485.c
Panthera_a	ANCESTRAL SPECIES	5	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00980000202261	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000171909	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153414.A.t	ENSGT00940000153678.a.a	ENSGT00390000006485.c
lion	MODERN SPECIES	7	IRAK4 (ENSPLOG00000021555)	PUS7L (ENSPLOG00000021524)	ADAMTS20 (ENSPLOG00000021419)	ENSPLOG00000021389	PRICKLE1 (ENSPLOG00000021364)	ZCRB1 (ENSPLOG00000021338)	PPHLN1 (ENSPLOG00000021254)	YAF2 (ENSPLOG00000021156)	GXYLT1 (ENSPLOG00000021088)	PDZRN4 (ENSPLOG00000020981) ##27	CNTN1 (ENSPLOG00000020725)	ENSPLOG00000020561	LRRK2 (ENSPLOG00000020373)	SLC2A13 (ENSPLOG00000020313)	C12orf40 (ENSPLOG00000020165)	ABCD2 (ENSPLOG00000020107) ##22	KIF21A (ENSPLOG00000020006)	CPNE8 (ENSPLOG00000019885)	ENSPLOG00000019821	SYT10 (ENSPLOG00000019768)	PKP2 (ENSPLOG00000019614)	YARS2 (ENSPLOG00000019563)	DNM1L (ENSPLOG00000019309)	FGD4 (ENSPLOG00000019046)	BICD1 (ENSPLOG00000018831)	RESF1 (ENSPLOG00000018774)	AMN1 (ENSPLOG00000018718)	ETFBKMT (ENSPLOG00000018694)	ENSPLOG00000018658	DENND5B (ENSPLOG00000018354)	SINHCAF (ENSPLOG00000018276)
leopard	MODERN SPECIES	22			ADAMTS20 (ENSPPRG00000001433)	ENSPPRG00000001577	PRICKLE1 (ENSPPRG00000002636)	ZCRB1 (ENSPPRG00000003066)	PPHLN1 (ENSPPRG00000007046)	YAF2 (ENSPPRG00000009233)	GXYLT1 (ENSPPRG00000009758)	PDZRN4 (ENSPPRG00000010410) ##27	CNTN1 (ENSPPRG00000013262)	LRRK2 (ENSPPRG00000015172)	SLC2A13 (ENSPPRG00000016385)	ENSPPRG00000018280	C12orf40 (ENSPPRG00000020671)	ABCD2 (ENSPPRG00000000223) ##22	KIF21A (ENSPPRG00000005284)	CPNE8 (ENSPPRG00000007422)	ENSPPRG00000008453	ENSPPRG00000009217	ENSPPRG00000018821	SYT10 (ENSPPRG00000010094)	PKP2 (ENSPPRG00000011075)	YARS2 (ENSPPRG00000011306)	DNM1L (ENSPPRG00000023244)	FGD4 (ENSPPRG00000001490)	BICD1 (ENSPPRG00000004034)	RESF1 (ENSPPRG00000004313)	AMN1 (ENSPPRG00000006230)	ETFBKMT (ENSPPRG00000006704)	ENSPPRG00000006982
Tiger	MODERN SPECIES	337					PRICKLE1 (ENSPTIG00000011660)	PPHLN1 (ENSPTIG00000013788)	ZCRB1 (ENSPTIG00000018037)	YAF2 (ENSPTIG00000018934)	ENSPTIG00000019364	GXYLT1 (ENSPTIG00000019972)	PDZRN4 (ENSPTIG00000004191) ##27	CNTN1 (ENSPTIG00000007852)	LRRK2 (ENSPTIG00000020651)	SLC2A13 (ENSPTIG00000008372)	C12orf40 (ENSPTIG00000011119)	ABCD2 (ENSPTIG00000012386) ##22	KIF21A (ENSPTIG00000013639)	CPNE8 (ENSPTIG00000009449)	ENSPTIG00000012362	ENSPTIG00000006779	SYT10 (ENSPTIG00000015718)	RPS4X (ENSPTIG00000016567)	ENSPTIG00000017192	HDAC8 (ENSPTIG00000018831)	PHKA1 (ENSPTIG00000020625)	ENSPTIG00000019640
Cat	MODERN SPECIES	238	PUS7L (ENSFCAG00000005091)	ADAMTS20 (ENSFCAG00000010889)	ENSFCAG00000053396	PRICKLE1 (ENSFCAG00000014763)	ZCRB1 (ENSFCAG00000014760)	PPHLN1 (ENSFCAG00000014762)	YAF2 (ENSFCAG00000030082)	GXYLT1 (ENSFCAG00000023419)	PDZRN4 (ENSFCAG00000036592) ##27	CNTN1 (ENSFCAG00000030194)	ENSFCAG00000052369	LRRK2 (ENSFCAG00000001819)	SLC2A13 (ENSFCAG00000009506)	ENSFCAG00000037740	CB4H12orf40 (ENSFCAG00000024984)	ABCD2 (ENSFCAG00000026569) ##22	KIF21A (ENSFCAG00000019067)	CPNE8 (ENSFCAG00000029103)	ENSFCAG00000032724	ENSFCAG00000029335	SYT10 (ENSFCAG00000013379)	PKP2 (ENSFCAG00000030734)	YARS2 (ENSFCAG00000005329)	FGD4 (ENSFCAG00000028083)	BICD1 (ENSFCAG00000012035)	ENSFCAG00000047829	RESF1 (ENSFCAG00000026722)	AMN1 (ENSFCAG00000022702)	ETFBKMT (ENSFCAG00000035702)	ENSFCAG00000036550	DENND5B (ENSFCAG00000005536)
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT01100000263511.b.a.b.a.b	ENSGT00940000153678.a.a
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c
Greater horseshoe bat	MODERN SPECIES	1	NELL2 (ENSRFEG00010005007)	TMEM117 (ENSRFEG00010004973)	TWF1 (ENSRFEG00010004957)	IRAK4 (ENSRFEG00010004937)	PUS7L (ENSRFEG00010004920)	ADAMTS20 (ENSRFEG00010004890)	PRICKLE1 (ENSRFEG00010004867)	PPHLN1 (ENSRFEG00010004822)	ZCRB1 (ENSRFEG00010004782)	GXYLT1 (ENSRFEG00010004753)	PDZRN4 (ENSRFEG00010004712) ##27	CNTN1 (ENSRFEG00010004639)	LRRK2 (ENSRFEG00010004573)	SLC2A13 (ENSRFEG00010004541)	C12orf40 (ENSRFEG00010004508)	ABCD2 (ENSRFEG00010004476) ##22	KIF21A (ENSRFEG00010004422)	CPNE8 (ENSRFEG00010004346)	ENSRFEG00010004321	SYT10 (ENSRFEG00010004297)	PKP2 (ENSRFEG00010004272)	YARS2 (ENSRFEG00010004254)	DNM1L (ENSRFEG00010004156)	FGD4 (ENSRFEG00010004019)	BICD1 (ENSRFEG00010003951)	RESF1 (ENSRFEG00010003920)	AMN1 (ENSRFEG00010003868)	ETFBKMT (ENSRFEG00010003838)	DENND5B (ENSRFEG00010003786)	SINHCAF (ENSRFEG00010003751)	CAPRIN2 (ENSRFEG00010003635)
Microbat	MODERN SPECIES	967	ENSMLUG00000001332	YAF2 (ENSMLUG00000029364)	GXYLT1 (ENSMLUG00000004356)	ENSMLUG00000028609	PDZRN4 (ENSMLUG00000000320) ##27	ENSMLUG00000030371	CNTN1 (ENSMLUG00000009145)	ENSMLUG00000026175	ENSMLUG00000026361	ENSMLUG00000024931	ENSMLUG00000023459	ENSMLUG00000023125	LRRK2 (ENSMLUG00000009336)	SLC2A13 (ENSMLUG00000008195)	C12orf40 (ENSMLUG00000008152)	ABCD2 (ENSMLUG00000002903) ##22	KIF21A (ENSMLUG00000014445)	ENSMLUG00000017268	CPNE8 (ENSMLUG00000013758)	ENSMLUG00000023588	ENSMLUG00000003970	SYT10 (ENSMLUG00000000402)	ENSMLUG00000026151	PKP2 (ENSMLUG00000001616)	YARS2 (ENSMLUG00000001614)	DNM1L (ENSMLUG00000013569)	FGD4 (ENSMLUG00000013557)	ENSMLUG00000023482	ENSMLUG00000027060	BICD1 (ENSMLUG00000009648)	ENSMLUG00000024450
Megabat	MODERN SPECIES	2358														SLC2A13 (ENSPVAG00000002276)	C12orf40 (ENSPVAG00000002274)	ABCD2 (ENSPVAG00000002272) ##22
Equus	DUPLICATION
Equus	DUPLICATION
Equus	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.b.a.a ##22
Donkey	DUPLICATION
Donkey	MODERN SPECIES	4													ENSEASG00005026319	ENSEASG00005028732	ENSEASG00005036964	ENSEASG00005036730 ##22	ENSEASG00005032953	ENSEASG00005036780 ##22	ENSEASG00005036893	ENSEASG00005029813	ENSEASG00005028851	ENSEASG00005032324	ENSEASG00005031932	ENSEASG00005029167	MAP2K3 (ENSEASG00005022571)	ENSEASG00005029970	TMEM11 (ENSEASG00005031815)	DHRS7B (ENSEASG00005022577)	ENSEASG00005036240	ENSEASG00005022587	ENSEASG00005022607
Donkey	MODERN SPECIES	4	PLD6 (ENSEASG00005017697)	ENSEASG00005017703	ENSEASG00005022607	ENSEASG00005022587	ENSEASG00005036240	DHRS7B (ENSEASG00005022577)	TMEM11 (ENSEASG00005031815)	ENSEASG00005029970	MAP2K3 (ENSEASG00005022571)	ENSEASG00005029167	ENSEASG00005031932	ENSEASG00005032324	ENSEASG00005028851	ENSEASG00005029813	ENSEASG00005036893	ENSEASG00005036780 ##22	ENSEASG00005032953	ENSEASG00005036730 ##22	ENSEASG00005036964	ENSEASG00005028732	ENSEASG00005026319
Horse	MODERN SPECIES	80																ENSECAG00000020862 ##22	ENSECAG00000028468	ENSECAG00000032394
Equus	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.b.a.b ##22
Horse	MODERN SPECIES	27	ENSECAG00000050595	RESF1 (ENSECAG00000010736)	ENSECAG00000051470	ENSECAG00000050973	ENSECAG00000050788	FGD4 (ENSECAG00000015379)	DNM1L (ENSECAG00000021929)	YARS2 (ENSECAG00000011140)	PKP2 (ENSECAG00000013566)	SYT10 (ENSECAG00000016752)	ENSECAG00000003178	ENSECAG00000013414	CPNE8 (ENSECAG00000014870)	KIF21A (ENSECAG00000024186)	ENSECAG00000029674 ##22	ENSECAG00000027797 ##22	SLC2A13 (ENSECAG00000007459)	LRRK2 (ENSECAG00000010288)	ENSECAG00000003485	ENSECAG00000006703	CNTN1 (ENSECAG00000011240)	PDZRN4 (ENSECAG00000000627) ##27	GXYLT1 (ENSECAG00000011563)	YAF2 (ENSECAG00000032360)	PPHLN1 (ENSECAG00000016067)	ZCRB1 (ENSECAG00000012174)	PRICKLE1 (ENSECAG00000018874)	ADAMTS20 (ENSECAG00000020835)	PUS7L (ENSECAG00000011182)	IRAK4 (ENSECAG00000014866)	TWF1 (ENSECAG00000024018)
Equus	ANCESTRAL SPECIES	16	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000163316	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00390000012178.g.a.b	ENSGT00730000111305	ENSGT00940000162982	ENSGT01100000263511.b.a.b.a.b.c.a.b.a.a.a
Donkey	MODERN SPECIES	28	ENSEASG00005026486	ENSEASG00005020931	ENSEASG00005029210	ENSEASG00005020917	ENSEASG00005020915	ENSEASG00005024110	ENSEASG00005037127	ENSEASG00005012930	ENSEASG00005032122 ##10	ENSEASG00005034116	ENSEASG00005032393	ENSEASG00005034388	ENSEASG00005018042	ENSEASG00005031878	ENSEASG00005024276	ENSEASG00005031921 ##22	ENSEASG00005004472	CPNE8 (ENSEASG00005004527)	ENSEASG00005027444	ENSEASG00005031490	SYT10 (ENSEASG00005004537)	PKP2 (ENSEASG00005004545)	YARS2 (ENSEASG00005004548)	DNM1L (ENSEASG00005004557)	ENSEASG00005004573	ENSEASG00005004580	ENSEASG00005004590	RESF1 (ENSEASG00005004595)	ENSEASG00005033475	AMN1 (ENSEASG00005027930)	ENSEASG00005031902
Horse	MODERN SPECIES	27	IRAK4 (ENSECAG00000014866)	PUS7L (ENSECAG00000011182)	ADAMTS20 (ENSECAG00000020835)	PRICKLE1 (ENSECAG00000018874)	ZCRB1 (ENSECAG00000012174)	PPHLN1 (ENSECAG00000016067)	YAF2 (ENSECAG00000032360)	GXYLT1 (ENSECAG00000011563)	PDZRN4 (ENSECAG00000000627) ##27	CNTN1 (ENSECAG00000011240)	ENSECAG00000006703	ENSECAG00000003485	LRRK2 (ENSECAG00000010288)	SLC2A13 (ENSECAG00000007459)	ENSECAG00000027797 ##22	ENSECAG00000029674 ##22	KIF21A (ENSECAG00000024186)	CPNE8 (ENSECAG00000014870)	ENSECAG00000013414	ENSECAG00000003178	SYT10 (ENSECAG00000016752)	PKP2 (ENSECAG00000013566)	YARS2 (ENSECAG00000011140)	DNM1L (ENSECAG00000021929)	FGD4 (ENSECAG00000015379)	ENSECAG00000050788	ENSECAG00000050973	ENSECAG00000051470	RESF1 (ENSECAG00000010736)	ENSECAG00000050595	ETFBKMT (ENSECAG00000005690)
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a
Primates	ANCESTRAL SPECIES	6	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000161696.c.a	ENSGT00910000147072	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00940000158636	ENSGT00940000154445.f.a	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00940000154913.h	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00390000004524.c.a.a.b.a.a	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000161696.c.a.d	ENSGT00910000147072	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000154445.f.a	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00940000154913.h	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906.h.a	ENSGT00390000012906.h.b	ENSGT00940000158899	ENSGT00390000004524.c.a.a.b.a.a	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000161696.c.a.d	ENSGT00910000147072	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Hominidae	ANCESTRAL SPECIES	4	ENSGT00530000063554.b	ENSGT00530000063516.a.a.d	ENSGT00940000158636	ENSGT00940000154445.f.a	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00940000154913.h	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906.h.a	ENSGT00390000012906.h.b	ENSGT00940000158899	ENSGT00390000004524.c.a.a.b.a.a	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000161696.c.a.d	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00530000063516.a.a.d	ENSGT00940000158636	ENSGT00940000154445.f.a	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00940000154913.h	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00910000148241	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906.h.a	ENSGT00390000012906.h.b	ENSGT00940000158899	ENSGT00390000004524.c.a.a.b.a.a	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000161696.c.a.d	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305
Gorilla	MODERN SPECIES	3	ENSGGOG00000041950	ADAMTS20 (ENSGGOG00000002541)	ENSGGOG00000004132	PRICKLE1 (ENSGGOG00000028170)	ENSGGOG00000026359	ZCRB1 (ENSGGOG00000015647)	ENSGGOG00000038298	ENSGGOG00000007230	GXYLT1 (ENSGGOG00000027928)	PDZRN4 (ENSGGOG00000025388) ##27	ENSGGOG00000041859	CNTN1 (ENSGGOG00000016609)	LRRK2 (ENSGGOG00000003336)	ENSGGOG00000040332	C12orf40 (ENSGGOG00000005961)	ABCD2 (ENSGGOG00000009463) ##22	KIF21A (ENSGGOG00000001632)	CPNE8 (ENSGGOG00000013974)	ALG10 (ENSGGOG00000008422)	ENSGGOG00000042736	ENSGGOG00000038762	ENSGGOG00000026257	ENSGGOG00000041990	ENSGGOG00000023042	ALG10B (ENSGGOG00000024625)	SYT10 (ENSGGOG00000005932)	ENSGGOG00000038594	PKP2 (ENSGGOG00000002106)	ENSGGOG00000026482	DNM1L (ENSGGOG00000006636)	ENSGGOG00000022749
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00530000063516.a.a.d	ENSGT00940000158636	ENSGT00940000154445.f.a	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00940000154913.h	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00910000148241	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906.g	ENSGT00910000146935.c	ENSGT00390000012906.h.b	ENSGT00940000158899	ENSGT00390000004524.c.a.a.b.a.a	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305
Pan	ANCESTRAL SPECIES	4	ENSGT00530000063516.a.a.d	ENSGT00940000158636	ENSGT00940000154445.f.a	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00940000154913.h	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00910000148241	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906.g	ENSGT00390000015930.y.a.a.a.a	ENSGT00910000146935.c	ENSGT00390000012906.h.b	ENSGT00940000158899	ENSGT00390000004524.c.a.a.b.a.a	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Bonobo	MODERN SPECIES	3	IRAK4 (ENSPPAG00000027862)	PUS7L (ENSPPAG00000042635)	ADAMTS20 (ENSPPAG00000043703)	ENSPPAG00000034009	PRICKLE1 (ENSPPAG00000042850)	ENSPPAG00000043968	ZCRB1 (ENSPPAG00000030593)	ENSPPAG00000038959	YAF2 (ENSPPAG00000033805)	GXYLT1 (ENSPPAG00000016567)	ENSPPAG00000044048 ##27	CNTN1 (ENSPPAG00000035124)	LRRK2 (ENSPPAG00000040921)	SLC2A13 (ENSPPAG00000039484)	C12orf40 (ENSPPAG00000044041)	ABCD2 (ENSPPAG00000030612) ##22	KIF21A (ENSPPAG00000026951)	CPNE8 (ENSPPAG00000043900)	ENSPPAG00000032887	ENSPPAG00000028345	ENSPPAG00000036373	ENSPPAG00000039641	ENSPPAG00000035627	ALG10 (ENSPPAG00000023455)	SYT10 (ENSPPAG00000043684)	ENSPPAG00000040913	PKP2 (ENSPPAG00000027997)	YARS2 (ENSPPAG00000036590)	DNM1L (ENSPPAG00000039981)	FGD4 (ENSPPAG00000034640)	ENSPPAG00000010177
Chimpanzee	MODERN SPECIES	3	ENSPTRG00000050923	ADAMTS20 (ENSPTRG00000004841)	ENSPTRG00000052655	PRICKLE1 (ENSPTRG00000004840)	PPHLN1 (ENSPTRG00000004839)	ZCRB1 (ENSPTRG00000004838)	YAF2 (ENSPTRG00000004837)	GXYLT1 (ENSPTRG00000004836)	PDZRN4 (ENSPTRG00000004835) ##27	ENSPTRG00000051012	CNTN1 (ENSPTRG00000004834)	ENSPTRG00000047527	LRRK2 (ENSPTRG00000004828)	SLC2A13 (ENSPTRG00000004827)	C12H12orf40 (ENSPTRG00000004826)	ABCD2 (ENSPTRG00000004825) ##22	KIF21A (ENSPTRG00000052260)	CPNE8 (ENSPTRG00000004823)	ENSPTRG00000039494	ALG10B (ENSPTRG00000029678)	ENSPTRG00000050389	ALG10 (ENSPTRG00000004822)	SYT10 (ENSPTRG00000004821)	ENSPTRG00000046328	PKP2 (ENSPTRG00000004820)	YARS2 (ENSPTRG00000004819)	DNM1L (ENSPTRG00000004817)	FGD4 (ENSPTRG00000004816)	ENSPTRG00000052199	BICD1 (ENSPTRG00000004815)	RESF1 (ENSPTRG00000004814)
Human	MODERN SPECIES	3	TWF1 (ENSG00000151239)	IRAK4 (ENSG00000198001)	PUS7L (ENSG00000129317)	ADAMTS20 (ENSG00000173157)	PRICKLE1 (ENSG00000139174)	ZCRB1 (ENSG00000139168)	PPHLN1 (ENSG00000134283)	YAF2 (ENSG00000015153)	GXYLT1 (ENSG00000151233)	PDZRN4 (ENSG00000165966) ##27	CNTN1 (ENSG00000018236)	MUC19 (ENSG00000205592)	LRRK2 (ENSG00000188906)	SLC2A13 (ENSG00000151229)	C12orf40 (ENSG00000180116)	ABCD2 (ENSG00000173208) ##22	KIF21A (ENSG00000139116)	CPNE8 (ENSG00000139117)	ALG10B (ENSG00000175548)	ALG10 (ENSG00000139133)	SYT10 (ENSG00000110975)	PKP2 (ENSG00000057294)	YARS2 (ENSG00000139131)	DNM1L (ENSG00000087470)	FGD4 (ENSG00000139132)	BICD1 (ENSG00000151746)	RESF1 (ENSG00000174718)	H3-5 (ENSG00000188375)	AMN1 (ENSG00000151743)	ETFBKMT (ENSG00000139160)	AK4P3 (ENSG00000233381)
Orangutan	MODERN SPECIES	3	TWF1 (ENSPPYG00000004428)	IRAK4 (ENSPPYG00000004427)	PUS7L (ENSPPYG00000004426)	ENSPPYG00000036658	ADAMTS20 (ENSPPYG00000004425)	PRICKLE1 (ENSPPYG00000004424)	ZCRB1 (ENSPPYG00000004422)	ENSPPYG00000004423	YAF2 (ENSPPYG00000033457)	GXYLT1 (ENSPPYG00000004419)	PDZRN4 (ENSPPYG00000004418) ##27	CNTN1 (ENSPPYG00000004417)	LRRK2 (ENSPPYG00000029445)	SLC2A13 (ENSPPYG00000004415)	C12orf40 (ENSPPYG00000004414)	ABCD2 (ENSPPYG00000004413) ##22	KIF21A (ENSPPYG00000004412)	CPNE8 (ENSPPYG00000004411)	ALG10B (ENSPPYG00000004409)	ENSPPYG00000034107	ALG10 (ENSPPYG00000004410)	SYT10 (ENSPPYG00000004408)	PKP2 (ENSPPYG00000004407)	YARS2 (ENSPPYG00000004406)	DNM1L (ENSPPYG00000004405)	FGD4 (ENSPPYG00000004404)	BICD1 (ENSPPYG00000004403)	RESF1 (ENSPPYG00000004402)	H3-5 (ENSPPYG00000004401)	AMN1 (ENSPPYG00000004400)	ETFBKMT (ENSPPYG00000037212)
Gibbon	MODERN SPECIES	1	PUS7L (ENSNLEG00000017934)	ADAMTS20 (ENSNLEG00000017936)	ENSNLEG00000028656	PRICKLE1 (ENSNLEG00000017938)	ENSNLEG00000031391	ZCRB1 (ENSNLEG00000017944)	ENSNLEG00000027269	ENSNLEG00000017941	YAF2 (ENSNLEG00000017946)	GXYLT1 (ENSNLEG00000028842)	PDZRN4 (ENSNLEG00000017948) ##27	CNTN1 (ENSNLEG00000017950)	LRRK2 (ENSNLEG00000017957)	SLC2A13 (ENSNLEG00000017960)	C12orf40 (ENSNLEG00000017961)	ABCD2 (ENSNLEG00000017963) ##22	KIF21A (ENSNLEG00000017964)	CPNE8 (ENSNLEG00000030228)	ENSNLEG00000032571	ENSNLEG00000033997	NR4A1 (ENSNLEG00000017763)	ATG101 (ENSNLEG00000017762)	KRT80 (ENSNLEG00000017759)	KRT7 (ENSNLEG00000017758)	ENSNLEG00000030957	KRT81 (ENSNLEG00000026581)	KRT86 (ENSNLEG00000017757)	KRT83 (ENSNLEG00000017756)	KRT85 (ENSNLEG00000017755)	KRT84 (ENSNLEG00000026671)	KRT82 (ENSNLEG00000017754)
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00940000158636	ENSGT00940000154445.f.a	ENSGT00940000157529	ENSGT00390000016228.p	ENSGT00730000111061.p.z	ENSGT00940000154913.h	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00390000004524.c.a.a.b.a.a	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000161696.c.a.d	ENSGT00910000147072	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00940000158636	ENSGT00940000154445.f.a	ENSGT00940000157529	ENSGT00390000016228.p	ENSGT00730000111061.p.z	ENSGT00940000154913.h	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00390000004524.c.a.a.b.a.a	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000161696.c.a.d	ENSGT00910000147072	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305
Vervet Monkey	MODERN SPECIES	2	IRAK4 (ENSCSAG00000006810)	PUS7L (ENSCSAG00000006827)	ADAMTS20 (ENSCSAG00000006963)	PRICKLE1 (ENSCSAG00000007028)	ENSCSAG00000007070	ZCRB1 (ENSCSAG00000007086)	YAF2 (ENSCSAG00000007094)	GXYLT1 (ENSCSAG00000007101)	PDZRN4 (ENSCSAG00000007106) ##27	CNTN1 (ENSCSAG00000007119)	MUC19 (ENSCSAG00000007205)	LRRK2 (ENSCSAG00000007254)	ENSCSAG00000019246	SLC2A13 (ENSCSAG00000007264)	C12orf40 (ENSCSAG00000007283)	ABCD2 (ENSCSAG00000007296) ##22	KIF21A (ENSCSAG00000007316)	CPNE8 (ENSCSAG00000007329)	ENSCSAG00000007335	SYT10 (ENSCSAG00000007343)	PKP2 (ENSCSAG00000007363)	YARS2 (ENSCSAG00000007382)	DNM1L (ENSCSAG00000007392)	FGD4 (ENSCSAG00000007398)	BICD1 (ENSCSAG00000007403)	RESF1 (ENSCSAG00000007407)	AMN1 (ENSCSAG00000007412)	ETFBKMT (ENSCSAG00000007414)	DENND5B (ENSCSAG00000007428)	ENSCSAG00000019245	TSPAN11 (ENSCSAG00000007437)
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00530000063516.a.a.c.a	ENSGT00940000158636	ENSGT00940000154445.f.a	ENSGT00940000157529	ENSGT00390000016228.p	ENSGT00730000111061.p.z	ENSGT00940000154913.h	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000003466.f	ENSGT00940000158899	ENSGT00390000004524.c.a.a.b.a.a	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000161696.c.a.d	ENSGT00910000147072	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Macaca	ANCESTRAL SPECIES	6	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000154445.f.a	ENSGT00940000157529	ENSGT00390000016228.p	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000003466.f	ENSGT00940000158899	ENSGT00390000006394.i.b	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000161696.c.a.d	ENSGT00910000147072	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Pig-tailed macaque	MODERN SPECIES	443	ADAMTS20 (ENSMNEG00000032916)	ENSMNEG00000045064	PRICKLE1 (ENSMNEG00000041816)	PPHLN1 (ENSMNEG00000035950)	ENSMNEG00000041890	ENSMNEG00000032558	YAF2 (ENSMNEG00000029487)	GXYLT1 (ENSMNEG00000044085)	PDZRN4 (ENSMNEG00000034756) ##27	CNTN1 (ENSMNEG00000044379)	ENSMNEG00000026040	LRRK2 (ENSMNEG00000029444)	ENSMNEG00000020748	SLC2A13 (ENSMNEG00000036026)	C12orf40 (ENSMNEG00000044027)	ABCD2 (ENSMNEG00000034605) ##22	KIF21A (ENSMNEG00000044992)	ENSMNEG00000027246
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.a.a.b.b.a.b.a.b.a.b	ENSGT00940000157529	ENSGT00390000016228.p	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00390000006394.i.b	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00900000142763.f
Crab-eating macaque	MODERN SPECIES	2	YAF2 (ENSMFAG00000035590)	GXYLT1 (ENSMFAG00000034181)	ENSMFAG00000052307	ENSMFAG00000056968	ENSMFAG00000056781	PDZRN4 (ENSMFAG00000037115) ##27	ENSMFAG00000065440	ENSMFAG00000051360	CNTN1 (ENSMFAG00000035494)	ENSMFAG00000054333	ENSMFAG00000052248	LRRK2 (ENSMFAG00000035387)	ENSMFAG00000058170	SLC2A13 (ENSMFAG00000048331)	C12orf40 (ENSMFAG00000033372)	ABCD2 (ENSMFAG00000002050) ##22	ENSMFAG00000057256	ENSMFAG00000017477	ENSMFAG00000048417	ENSMFAG00000062284	CPNE8 (ENSMFAG00000041185)	ENSMFAG00000058438	ENSMFAG00000054017	ENSMFAG00000056607	SYT10 (ENSMFAG00000034558)	ENSMFAG00000017689	PKP2 (ENSMFAG00000045800)	YARS2 (ENSMFAG00000032763)	ENSMFAG00000052868	DNM1L (ENSMFAG00000006058)	FGD4 (ENSMFAG00000032033)
Rhesus	MODERN SPECIES	2	TMEM117 (ENSMMUG00000000205)	TWF1 (ENSMMUG00000006154)	IRAK4 (ENSMMUG00000000204)	PUS7L (ENSMMUG00000000203)	ADAMTS20 (ENSMMUG00000013942)	ENSMMUG00000059462	PRICKLE1 (ENSMMUG00000021733)	PPHLN1 (ENSMMUG00000021735)	ZCRB1 (ENSMMUG00000017319)	YAF2 (ENSMMUG00000010868)	PDZRN4 (ENSMMUG00000002641) ##27	CNTN1 (ENSMMUG00000021163)	LRRK2 (ENSMMUG00000015857)	SLC2A13 (ENSMMUG00000010078)	C11H12orf40 (ENSMMUG00000010077)	ABCD2 (ENSMMUG00000014007) ##22	ENSMMUG00000051924	KIF21A (ENSMMUG00000021192)	ENSMMUG00000060125	CPNE8 (ENSMMUG00000013666)	ENSMMUG00000001214	SYT10 (ENSMMUG00000010712)	ENSMMUG00000015343	ENSMMUG00000051290	PKP2 (ENSMMUG00000000595)	YARS2 (ENSMMUG00000013654)	DNM1L (ENSMMUG00000013655)	ENSMMUG00000063112	FGD4 (ENSMMUG00000004851)	BICD1 (ENSMMUG00000007395)	RESF1 (ENSMMUG00000023575)
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000158636	ENSGT00940000154445.f.a	ENSGT00940000157529	ENSGT00390000016228.p	ENSGT00730000111061.p.z	ENSGT00940000154913.h	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00910000148161	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000003466.f	ENSGT00940000158899	ENSGT00390000004524.c.a.a.b.a.a	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982
Cercopithecinae_d	ANCESTRAL SPECIES	242												ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a
Sooty mangabey	MODERN SPECIES	361													ENSCATG00000043422	LRRK2 (ENSCATG00000019728)	SLC2A13 (ENSCATG00000039570)	ABCD2 (ENSCATG00000038206) ##22	C12orf40 (ENSCATG00000005574)	ENSCATG00000028639	KIF21A (ENSCATG00000031474)
Drill	MODERN SPECIES	252															C12orf40 (ENSMLEG00000028822)	ABCD2 (ENSMLEG00000037195) ##22	KIF21A (ENSMLEG00000029492)
Olive baboon	MODERN SPECIES	19	ZCRB1 (ENSPANG00000010274)	ENSPANG00000048843	ENSPANG00000038616	ENSPANG00000042854	PPHLN1 (ENSPANG00000009967)	GXYLT1 (ENSPANG00000022965)	ENSPANG00000049095	PDZRN4 (ENSPANG00000007816) ##27	CNTN1 (ENSPANG00000022088)	ENSPANG00000047329	ENSPANG00000044765	LRRK2 (ENSPANG00000010275)	HIST1H3A (ENSPANG00000037957)	SLC2A13 (ENSPANG00000019087)	C12orf40 (ENSPANG00000018245)	ABCD2 (ENSPANG00000015335) ##22	KIF21A (ENSPANG00000017444)	CPNE8 (ENSPANG00000013195)	ENSPANG00000006000	SYT10 (ENSPANG00000018998)	PKP2 (ENSPANG00000009883)	YARS2 (ENSPANG00000015833)	DNM1L (ENSPANG00000017980)	FGD4 (ENSPANG00000021903)	BICD1 (ENSPANG00000004473)	RESF1 (ENSPANG00000009884)	AMN1 (ENSPANG00000025713)	ETFBKMT (ENSPANG00000048959)	DENND5B (ENSPANG00000017445)	ENSPANG00000049359	ENSPANG00000030437
Rhinopithecus	ANCESTRAL SPECIES	709												ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22
Golden snub-nosed monkey	MODERN SPECIES	624												LRRK2 (ENSRROG00000041671)	ENSRROG00000018423	SLC2A13 (ENSRROG00000029915)	C12orf40 (ENSRROG00000035279)	ABCD2 (ENSRROG00000043830) ##22
Black snub-nosed monkey	MODERN SPECIES	2276																ABCD2 (ENSRBIG00000032674) ##22
Platyrrhini	ANCESTRAL SPECIES	44	ENSGT00530000063554.b	ENSGT00930000150941.x.a.b.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228.r	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00940000153889.e.b.a.d.b	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000161696.c.a	ENSGT00910000147072.a	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a
Cebidae	ANCESTRAL SPECIES	2	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00930000150941.x.a.b.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228.r	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00940000153889.e.b.a.d.b	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000161696.c.a	ENSGT00910000147072.a	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a
Cebidae_a	ANCESTRAL SPECIES	5	ENSGT00930000150941.x.a.b.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228.r	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00940000153889.e.b.a.d.b	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00910000146950	ENSGT00940000158267	ENSGT00530000063410.a.h.a.b.a	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000161696.c.a.b	ENSGT00910000147072.a	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a
Capuchin	MODERN SPECIES	477													ENSCCAG00000023657	SLC2A13 (ENSCCAG00000023720)	C12orf40 (ENSCCAG00000036923)	ABCD2 (ENSCCAG00000024864) ##22	KIF21A (ENSCCAG00000033601)	ENSCCAG00000032179	ENSCCAG00000033224	CPNE8 (ENSCCAG00000019687)
Bolivian squirrel monkey	MODERN SPECIES	60	ENSSBOG00000015384	ENSSBOG00000022913	ZCRB1 (ENSSBOG00000019523)	PPHLN1 (ENSSBOG00000020471)	YAF2 (ENSSBOG00000012699)	GXYLT1 (ENSSBOG00000035882)	ENSSBOG00000020778	PDZRN4 (ENSSBOG00000032834) ##27	CNTN1 (ENSSBOG00000029438)	ENSSBOG00000019571	ENSSBOG00000023935	LRRK2 (ENSSBOG00000024191)	ENSSBOG00000024781	SLC2A13 (ENSSBOG00000017268)	C12orf40 (ENSSBOG00000021102)	ABCD2 (ENSSBOG00000033236) ##22	ENSSBOG00000020423	ENSSBOG00000036233	KIF21A (ENSSBOG00000019336)	CPNE8 (ENSSBOG00000033944)	ENSSBOG00000023598	ENSSBOG00000035358	SYT10 (ENSSBOG00000027146)	PKP2 (ENSSBOG00000034655)	YARS2 (ENSSBOG00000023473)	ENSSBOG00000033569	DNM1L (ENSSBOG00000026857)	FGD4 (ENSSBOG00000027913)	BICD1 (ENSSBOG00000027120)	RESF1 (ENSSBOG00000017194)	ENSSBOG00000026922
Marmoset	MODERN SPECIES	21	IRAK4 (ENSCJAG00000013388)	PUS7L (ENSCJAG00000013448)	ADAMTS20 (ENSCJAG00000013458)	ENSCJAG00000085920	PRICKLE1 (ENSCJAG00000017695)	PPHLN1 (ENSCJAG00000017726)	ZCRB1 (ENSCJAG00000017749)	YAF2 (ENSCJAG00000017762)	GXYLT1 (ENSCJAG00000017773)	PDZRN4 (ENSCJAG00000017792) ##27	CNTN1 (ENSCJAG00000017809)	LRRK2 (ENSCJAG00000017840)	SLC2A13 (ENSCJAG00000017922)	ENSCJAG00000081066	C12orf40 (ENSCJAG00000017927)	ABCD2 (ENSCJAG00000017942) ##22	KIF21A (ENSCJAG00000017961)	ENSCJAG00000083358	CPNE8 (ENSCJAG00000018036)	ENSCJAG00000064319	SYT10 (ENSCJAG00000018100)	ENSCJAG00000082512	PKP2 (ENSCJAG00000018114)	YARS2 (ENSCJAG00000018129)	DNM1L (ENSCJAG00000018143)	FGD4 (ENSCJAG00000018234)	BICD1 (ENSCJAG00000018291)	ENSCJAG00000080881	RESF1 (ENSCJAG00000013037)	ENSCJAG00000086870	ENSCJAG00000085087
Mas night monkey	MODERN SPECIES	735	PPHLN1 (ENSANAG00000029769)	ENSANAG00000026359	ENSANAG00000026617	ZCRB1 (ENSANAG00000020058)	ENSANAG00000032185	ENSANAG00000032985	YAF2 (ENSANAG00000021963)	GXYLT1 (ENSANAG00000030783)	ENSANAG00000023841	PDZRN4 (ENSANAG00000017862) ##27	CNTN1 (ENSANAG00000035821)	LRRK2 (ENSANAG00000036859)	ENSANAG00000029503	SLC2A13 (ENSANAG00000024919)	C12orf40 (ENSANAG00000028491)	ABCD2 (ENSANAG00000022592) ##22	ENSANAG00000037700	KIF21A (ENSANAG00000029497)
Tarsier	MODERN SPECIES	3992																ABCD2 (ENSTSYG00000000694) ##22	KIF21A (ENSTSYG00000004027)
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000170352	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c
Mouse lemur	MODERN SPECIES	29	ENSMICG00000043473	TMBIM4 (ENSMICG00000017400)	IRAK3 (ENSMICG00000017401)	HELB (ENSMICG00000017060)	GRIP1 (ENSMICG00000017070)	CAND1 (ENSMICG00000004211)	DYRK2 (ENSMICG00000035325)	IFNG (ENSMICG00000004223)	IL26 (ENSMICG00000003647)	IL22 (ENSMICG00000003654)	MDM1 (ENSMICG00000003661)	RAP1B (ENSMICG00000013148)	NUP107 (ENSMICG00000013152)	SLC35E3 (ENSMICG00000029927)	C12orf40 (ENSMICG00000013199)	ABCD2 (ENSMICG00000033054) ##22	KIF21A (ENSMICG00000013145)	CPNE8 (ENSMICG00000017464)	ENSMICG00000029831	ENSMICG00000005398	SYT10 (ENSMICG00000010299)	ENSMICG00000037631	ENSMICG00000047187	ENSMICG00000047530	ENSMICG00000047394	ENSMICG00000037040	SDR9C7 (ENSMICG00000041509)	HSD17B6 (ENSMICG00000043569)	ENSMICG00000045041	ENSMICG00000036736	PRIM1 (ENSMICG00000006060)
Lemuriformes_a	ANCESTRAL SPECIES	8	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000170352	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00940000153438.b
Coquerels sifaka	MODERN SPECIES	139	PUS7L (ENSPCOG00000025211)	ENSPCOG00000010283	ADAMTS20 (ENSPCOG00000017667)	PRICKLE1 (ENSPCOG00000006371)	PPHLN1 (ENSPCOG00000025208)	ZCRB1 (ENSPCOG00000022958)	YAF2 (ENSPCOG00000021954)	GXYLT1 (ENSPCOG00000024287)	ENSPCOG00000017779	PDZRN4 (ENSPCOG00000015632) ##27	CNTN1 (ENSPCOG00000019694)	LRRK2 (ENSPCOG00000024486)	ENSPCOG00000008044	SLC2A13 (ENSPCOG00000013347)	C12orf40 (ENSPCOG00000023054)	ABCD2 (ENSPCOG00000021406) ##22	KIF21A (ENSPCOG00000015969)	EDIL3 (ENSPCOG00000001568)	HAPLN1 (ENSPCOG00000023033)	VCAN (ENSPCOG00000028583)	RAB28 (ENSPCOG00000015364)	NKX3-2 (ENSPCOG00000024252)	BOD1L1 (ENSPCOG00000028312)	ENSPCOG00000026440	CPEB2 (ENSPCOG00000027324)	C1QTNF7 (ENSPCOG00000028186)	CC2D2A (ENSPCOG00000027889)	FBXL5 (ENSPCOG00000015397)	BST1 (ENSPCOG00000021913)	CD38 (ENSPCOG00000012225)	PROM1 (ENSPCOG00000018268)
Greater bamboo lemur	MODERN SPECIES	319	RASAL3 (ENSPSMG00000009096)	WIZ (ENSPSMG00000009151)	AKAP8L (ENSPSMG00000009226)	AKAP8 (ENSPSMG00000009285)	ENSPSMG00000009336	EPHX3 (ENSPSMG00000009354)	NOTCH3 (ENSPSMG00000009419)	ENSPSMG00000009436	ILVBL (ENSPSMG00000009515)	SYDE1 (ENSPSMG00000009583)	ENSPSMG00000009621	OR1I1 (ENSPSMG00000009643)	CASP14 (ENSPSMG00000009650)	ENSPSMG00000009655	C12orf40 (ENSPSMG00000009671)	ABCD2 (ENSPSMG00000009693) ##22	KIF21A (ENSPSMG00000009951)	CPNE8 (ENSPSMG00000010217)	ENSPSMG00000010227	EIF4B (ENSPSMG00000010432)
Bushbaby	MODERN SPECIES	185	IRAK4 (ENSOGAG00000007522)	PUS7L (ENSOGAG00000028696)	ADAMTS20 (ENSOGAG00000007508)	PRICKLE1 (ENSOGAG00000004015)	ENSOGAG00000004012	ENSOGAG00000013178	YAF2 (ENSOGAG00000028144)	GXYLT1 (ENSOGAG00000000552)	PDZRN4 (ENSOGAG00000013296) ##27	CNTN1 (ENSOGAG00000001426)	ENSOGAG00000033428	LRRK2 (ENSOGAG00000000943)	ENSOGAG00000034119	SLC2A13 (ENSOGAG00000007763)	C12orf40 (ENSOGAG00000001031)	ABCD2 (ENSOGAG00000025324) ##22	KIF21A (ENSOGAG00000001030)	ENSOGAG00000033065	CPNE8 (ENSOGAG00000007753)
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Tree shrew	MODERN SPECIES	1902															C12orf40 (ENSTBEG00000006247)	ABCD2 (ENSTBEG00000005569) ##22	KIF21A (ENSTBEG00000003113)
Glires	ANCESTRAL SPECIES	4	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Lagomorpha	ANCESTRAL SPECIES	27	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.y.a	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000163501	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Rabbit	MODERN SPECIES	19	IRAK4 (ENSOCUG00000004103)	PUS7L (ENSOCUG00000004093)	ADAMTS20 (ENSOCUG00000012959)	PRICKLE1 (ENSOCUG00000023490)	PPHLN1 (ENSOCUG00000015680)	ENSOCUG00000013664	YAF2 (ENSOCUG00000007321)	GXYLT1 (ENSOCUG00000027426)	PDZRN4 (ENSOCUG00000005658) ##27	CNTN1 (ENSOCUG00000009395)	ENSOCUG00000034185	ENSOCUG00000032666	LRRK2 (ENSOCUG00000007857)	SLC2A13 (ENSOCUG00000032613)	ENSOCUG00000004661	ABCD2 (ENSOCUG00000016168) ##22	KIF21A (ENSOCUG00000016630)	ENSOCUG00000034840	CPNE8 (ENSOCUG00000017747)	ENSOCUG00000015824	SYT10 (ENSOCUG00000004624)	PKP2 (ENSOCUG00000000023)	YARS2 (ENSOCUG00000000022)	DNM1L (ENSOCUG00000000021)	FGD4 (ENSOCUG00000013919)	ENSOCUG00000035361	BICD1 (ENSOCUG00000017857)	RESF1 (ENSOCUG00000006589)	ENSOCUG00000033986	AMN1 (ENSOCUG00000011737)	ENSOCUG00000023987
Pika	MODERN SPECIES	1615															ENSOPRG00000001608	ABCD2 (ENSOPRG00000014011) ##22	KIF21A (ENSOPRG00000013923)
Rodentia	ANCESTRAL SPECIES	5	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00910000147839	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228.h.a	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765
Muroidea	ANCESTRAL SPECIES	31	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228.h.a	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228.h.a	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00960000191250	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000153561.b.b	ENSGT00940000157610	ENSGT00940000160461	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT00390000009978	ENSGT00940000163480	ENSGT00940000161995	ENSGT00390000009250
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228.h.a	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00960000191250	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000153561.b.b	ENSGT00940000157610	ENSGT00940000160461	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT00390000009978	ENSGT00940000163480	ENSGT00940000161995	ENSGT00390000009250
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228.h.a	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000153561.b.b	ENSGT00940000157610	ENSGT00940000160461	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT00390000009978	ENSGT00940000163480	ENSGT00940000161995	ENSGT00390000009250
Chinese hamster chok1gshd	MODERN SPECIES	1	Adamts20 (ENSCGRG00001009652)	ENSCGRG00001010157	Prickle1 (ENSCGRG00001022837)	ENSCGRG00001022248	Zcrb1 (ENSCGRG00001023392)	ENSCGRG00001023638	ENSCGRG00001023773	Yaf2 (ENSCGRG00001021765)	Gxylt1 (ENSCGRG00001021374)	ENSCGRG00001008965	Pdzrn4 (ENSCGRG00001023763) ##27	Cntn1 (ENSCGRG00001023727)	Lrrk2 (ENSCGRG00001009933)	Slc2a13 (ENSCGRG00001001998)	CN725425 (ENSCGRG00001022464)	Abcd2 (ENSCGRG00001022101) ##22	ENSCGRG00001009308	Kif21a (ENSCGRG00001012403)	Cpne8 (ENSCGRG00001023120)	Alg10b (ENSCGRG00001023011)	Syt10 (ENSCGRG00001022503)	Rabl2 (ENSCGRG00001021894)	Acr (ENSCGRG00001010552)	Shank3 (ENSCGRG00001021597)	Arsa (ENSCGRG00001021147)	Mapk8ip2 (ENSCGRG00001023653)	Chkb (ENSCGRG00001003456)	Cpt1b (ENSCGRG00001001930)	Syce3 (ENSCGRG00001023759)	ENSCGRG00001010512	Odf3b (ENSCGRG00001003216)
Golden Hamster	MODERN SPECIES	626	Twf1 (ENSMAUG00000010896)	Irak4 (ENSMAUG00000015813)	Pus7l (ENSMAUG00000012622)	Adamts20 (ENSMAUG00000012674)	Prickle1 (ENSMAUG00000020994)	Pphln1 (ENSMAUG00000011738)	Zcrb1 (ENSMAUG00000009266)	Yaf2 (ENSMAUG00000009658)	Gxylt1 (ENSMAUG00000009967)	ENSMAUG00000009121	Pdzrn4 (ENSMAUG00000020766) ##27	Cntn1 (ENSMAUG00000019116)	Lrrk2 (ENSMAUG00000013795)	Slc2a13 (ENSMAUG00000012116)	CN725425 (ENSMAUG00000010765)	Abcd2 (ENSMAUG00000012545) ##22	Kif21a (ENSMAUG00000017807)	Cpne8 (ENSMAUG00000016239)	Alg10b (ENSMAUG00000010415)	Syt10 (ENSMAUG00000009924)	Rabl2 (ENSMAUG00000010955)	Acr (ENSMAUG00000006612)	Shank3 (ENSMAUG00000018491)	Arsa (ENSMAUG00000004167)	Mapk8ip2 (ENSMAUG00000010821)	Chkb (ENSMAUG00000008994)	ENSMAUG00000011968	ENSMAUG00000007948	Syce3 (ENSMAUG00000005251)	Odf3b (ENSMAUG00000008739)	Tymp (ENSMAUG00000004074)
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228.h.a	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00960000191250	ENSGT00940000155915	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000153561.b.b	ENSGT00940000157610	ENSGT00940000160461	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT00390000009978	ENSGT00940000163480	ENSGT00940000161995	ENSGT00390000009250
Prairie vole	MODERN SPECIES	2	Twf1 (ENSMOCG00000007750)	ENSMOCG00000002575	Pus7l (ENSMOCG00000015330)	Adamts20 (ENSMOCG00000002582)	Prickle1 (ENSMOCG00000011372)	Pphln1 (ENSMOCG00000022641)	Zcrb1 (ENSMOCG00000011009)	Yaf2 (ENSMOCG00000020557)	Gxylt1 (ENSMOCG00000011890)	Pdzrn4 (ENSMOCG00000021729) ##27	Cntn1 (ENSMOCG00000012159)	ENSMOCG00000017819	Lrrk2 (ENSMOCG00000003192)	Slc2a13 (ENSMOCG00000006751)	CN725425 (ENSMOCG00000017400)	Abcd2 (ENSMOCG00000021556) ##22	Kif21a (ENSMOCG00000008492)	Cpne8 (ENSMOCG00000019821)	Alg10b (ENSMOCG00000022833)	Syt10 (ENSMOCG00000010483)	Rabl2 (ENSMOCG00000002775)	Acr (ENSMOCG00000004907)	Shank3 (ENSMOCG00000009362)	ENSMOCG00000001794	Arsa (ENSMOCG00000015278)	Mapk8ip2 (ENSMOCG00000017599)	Chkb (ENSMOCG00000000306)	ENSMOCG00000011037	ENSMOCG00000001265	Syce3 (ENSMOCG00000012683)	Odf3b (ENSMOCG00000017597)
Northern American deer mouse	MODERN SPECIES	12	Irak4 (ENSPEMG00000018737)	Pus7l (ENSPEMG00000016583)	Adamts20 (ENSPEMG00000017664)	ENSPEMG00000025295	Prickle1 (ENSPEMG00000013383)	ENSPEMG00000030409	Zcrb1 (ENSPEMG00000005293)	Yaf2 (ENSPEMG00000000787)	Gxylt1 (ENSPEMG00000025095)	Pdzrn4 (ENSPEMG00000005226) ##27	ENSPEMG00000030528	Cntn1 (ENSPEMG00000001410)	Lrrk2 (ENSPEMG00000008690)	Slc2a13 (ENSPEMG00000000329)	CN725425 (ENSPEMG00000023448)	Abcd2 (ENSPEMG00000023925) ##22	Kif21a (ENSPEMG00000023536)	Cpne8 (ENSPEMG00000021609)	Alg10b (ENSPEMG00000025886)	Syt10 (ENSPEMG00000017020)	ENSPEMG00000025615	Rabl2 (ENSPEMG00000024045)	Acr (ENSPEMG00000021431)	Shank3 (ENSPEMG00000023862)	Arsa (ENSPEMG00000022901)	Mapk8ip2 (ENSPEMG00000023117)	Chkb (ENSPEMG00000022436)	Cpt1b (ENSPEMG00000021514)	Syce3 (ENSPEMG00000022067)	Klhdc7b (ENSPEMG00000025743)	Odf3b (ENSPEMG00000013237)
Murinae	ANCESTRAL SPECIES	10	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228.h.a	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00960000191250	ENSGT00940000155915	ENSGT00680000100886	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000153561.b.b	ENSGT00940000157610	ENSGT00940000160461	ENSGT00860000136149	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT00390000009978	ENSGT00940000163480	ENSGT00940000161995
Mus	ANCESTRAL SPECIES	11	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228.h.a	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00960000191250	ENSGT00940000155915	ENSGT00680000100886	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000153561.b.b	ENSGT00940000157610	ENSGT00940000160461	ENSGT00860000136149	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT00390000009978	ENSGT00940000163480	ENSGT00940000161995
Mus_A	ANCESTRAL SPECIES	13	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228.h.a	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00960000191250	ENSGT00940000155915	ENSGT00680000100886	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000153561.b.b	ENSGT00940000157610	ENSGT00940000160461	ENSGT00860000136149	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT00390000009978	ENSGT00940000163480	ENSGT00940000161995
Mus_B	ANCESTRAL SPECIES	12	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228.h.a	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00960000191250	ENSGT00940000155915	ENSGT00680000100886	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000153561.b.b	ENSGT00940000157610	ENSGT00940000160461	ENSGT00860000136149	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT00390000009978	ENSGT00940000163480	ENSGT00940000161995
Mouse	MODERN SPECIES	6	Irak4 (ENSMUSG00000059883)	Pus7l (ENSMUSG00000033356)	Adamts20 (ENSMUSG00000022449)	Prickle1 (ENSMUSG00000036158)	Pphln1 (ENSMUSG00000036167)	Zcrb1 (ENSMUSG00000022635)	Yaf2 (ENSMUSG00000022634)	Gxylt1 (ENSMUSG00000036197)	Pdzrn4 (ENSMUSG00000036218) ##27	Cntn1 (ENSMUSG00000055022)	Muc19 (ENSMUSG00000118670)	Smgc (ENSMUSG00000047295)	Lrrk2 (ENSMUSG00000036273)	Slc2a13 (ENSMUSG00000036298)	CN725425 (ENSMUSG00000078932)	Abcd2 (ENSMUSG00000055782) ##22	Kif21a (ENSMUSG00000022629)	Cpne8 (ENSMUSG00000052560)	Alg10b (ENSMUSG00000075470)	Syt10 (ENSMUSG00000063260)	Rabl2 (ENSMUSG00000022621)	Acr (ENSMUSG00000022622)	Shank3 (ENSMUSG00000022623)	Arsa (ENSMUSG00000022620)	Mapk8ip2 (ENSMUSG00000022619)	Chkb (ENSMUSG00000022617)	Cpt1b (ENSMUSG00000078937)	Syce3 (ENSMUSG00000078938)	Klhdc7b (ENSMUSG00000091680)	Odf3b (ENSMUSG00000047394)	Tymp (ENSMUSG00000022615)
Mus_C	ANCESTRAL SPECIES	17	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228.h.a	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00960000191250	ENSGT00940000155915	ENSGT00680000100886	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000153561.b.b	ENSGT00940000157610	ENSGT00940000160461	ENSGT00860000136149	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT00390000009978	ENSGT00940000163480	ENSGT00940000161995
Steppe mouse	MODERN SPECIES	2910											ENSMSIG00000016259	ENSMSIG00000016316	Lrrk2 (ENSMSIG00000016337)	Slc2a13 (ENSMSIG00000016470)	CN725425 (ENSMSIG00000016512)	Abcd2 (ENSMSIG00000016583) ##22	Kif21a (ENSMSIG00000016621)	ENSMSIG00000017966	ENSMSIG00000018029
spretus	MODERN SPECIES	6	Twf1 (MGP_SPRETEiJ_G0021093)	Irak4 (MGP_SPRETEiJ_G0021092)	Pus7l (MGP_SPRETEiJ_G0021091)	Adamts20 (MGP_SPRETEiJ_G0021090)	Prickle1 (MGP_SPRETEiJ_G0021089)	Pphln1 (MGP_SPRETEiJ_G0021088)	Zcrb1 (MGP_SPRETEiJ_G0021087)	Yaf2 (MGP_SPRETEiJ_G0021086)	Gxylt1 (MGP_SPRETEiJ_G0021085)	Pdzrn4 (MGP_SPRETEiJ_G0021084) ##27	Cntn1 (MGP_SPRETEiJ_G0021083)	MGP_SPRETEiJ_G0021082	Lrrk2 (MGP_SPRETEiJ_G0021081)	Slc2a13 (MGP_SPRETEiJ_G0021080)	CN725425 (MGP_SPRETEiJ_G0021079)	Abcd2 (MGP_SPRETEiJ_G0021078) ##22	Kif21a (MGP_SPRETEiJ_G0021077)	Cpne8 (MGP_SPRETEiJ_G0021076)	Alg10b (MGP_SPRETEiJ_G0021075)	Syt10 (MGP_SPRETEiJ_G0021074)	Rabl2 (MGP_SPRETEiJ_G0021073)	Acr (MGP_SPRETEiJ_G0021072)	Shank3 (MGP_SPRETEiJ_G0021071)	MGP_SPRETEiJ_G0021070	Mapk8ip2 (MGP_SPRETEiJ_G0021069)	MGP_SPRETEiJ_G0021068	Chkb (MGP_SPRETEiJ_G0021066)	Cpt1b (MGP_SPRETEiJ_G0021067)	Syce3 (MGP_SPRETEiJ_G0021065)	MGP_SPRETEiJ_G0021064	Odf3b (MGP_SPRETEiJ_G0021063)
Ryukyu mouse	MODERN SPECIES	6	Twf1 (MGP_CAROLIEiJ_G0020197)	Irak4 (MGP_CAROLIEiJ_G0020196)	Pus7l (MGP_CAROLIEiJ_G0020195)	Adamts20 (MGP_CAROLIEiJ_G0020194)	Prickle1 (MGP_CAROLIEiJ_G0020193)	Pphln1 (MGP_CAROLIEiJ_G0020192)	Zcrb1 (MGP_CAROLIEiJ_G0020191)	Yaf2 (MGP_CAROLIEiJ_G0020190)	Gxylt1 (MGP_CAROLIEiJ_G0020189)	MGP_CAROLIEiJ_G0020188 ##27	Cntn1 (MGP_CAROLIEiJ_G0020187)	MGP_CAROLIEiJ_G0020186	Lrrk2 (MGP_CAROLIEiJ_G0020185)	Slc2a13 (MGP_CAROLIEiJ_G0020184)	CN725425 (MGP_CAROLIEiJ_G0020183)	Abcd2 (MGP_CAROLIEiJ_G0020182) ##22	Kif21a (MGP_CAROLIEiJ_G0020181)	Cpne8 (MGP_CAROLIEiJ_G0020180)	MGP_CAROLIEiJ_G0020179	Alg10b (MGP_CAROLIEiJ_G0020178)	Syt10 (MGP_CAROLIEiJ_G0020177)	Rabl2 (MGP_CAROLIEiJ_G0020176)	Acr (MGP_CAROLIEiJ_G0020175)	Shank3 (MGP_CAROLIEiJ_G0020174)	MGP_CAROLIEiJ_G0020173	Mapk8ip2 (MGP_CAROLIEiJ_G0020172)	MGP_CAROLIEiJ_G0020171	Chkb (MGP_CAROLIEiJ_G0020169)	Cpt1b (MGP_CAROLIEiJ_G0020170)	Syce3 (MGP_CAROLIEiJ_G0020168)	MGP_CAROLIEiJ_G0020167
Shrew mouse	MODERN SPECIES	8	Twf1 (MGP_PahariEiJ_G0020201)	Irak4 (MGP_PahariEiJ_G0020200)	Pus7l (MGP_PahariEiJ_G0020199)	Adamts20 (MGP_PahariEiJ_G0020198)	Prickle1 (MGP_PahariEiJ_G0020197)	Pphln1 (MGP_PahariEiJ_G0020196)	Zcrb1 (MGP_PahariEiJ_G0020195)	Yaf2 (MGP_PahariEiJ_G0020194)	Gxylt1 (MGP_PahariEiJ_G0020193)	Pdzrn4 (MGP_PahariEiJ_G0020192) ##27	Cntn1 (MGP_PahariEiJ_G0020191)	MGP_PahariEiJ_G0020190	MGP_PahariEiJ_G0020189	Slc2a13 (MGP_PahariEiJ_G0020188)	CN725425 (MGP_PahariEiJ_G0020187)	Abcd2 (MGP_PahariEiJ_G0020186) ##22	Kif21a (MGP_PahariEiJ_G0020185)	Cpne8 (MGP_PahariEiJ_G0020184)	Alg10b (MGP_PahariEiJ_G0020183)	Syt10 (MGP_PahariEiJ_G0020182)	Rabl2 (MGP_PahariEiJ_G0020181)	Acr (MGP_PahariEiJ_G0020180)	Shank3 (MGP_PahariEiJ_G0020179)	Arsa (MGP_PahariEiJ_G0020178)	Mapk8ip2 (MGP_PahariEiJ_G0020177)	MGP_PahariEiJ_G0020176	Chkb (MGP_PahariEiJ_G0020174)	Cpt1b (MGP_PahariEiJ_G0020175)	Syce3 (MGP_PahariEiJ_G0020173)	MGP_PahariEiJ_G0020172	Odf3b (MGP_PahariEiJ_G0020171)
Rat	MODERN SPECIES	17	Adamts20 (ENSRNOG00000033397)	Prickle1 (ENSRNOG00000022772)	Pphln1 (ENSRNOG00000022778)	Zcrb1 (ENSRNOG00000004996)	Yaf2 (ENSRNOG00000004773)	Gxylt1 (ENSRNOG00000005234)	Pdzrn4 (ENSRNOG00000022844) ##27	Cntn1 (ENSRNOG00000004438)	AABR07058745.1 (ENSRNOG00000050884)	AC096792.1 (ENSRNOG00000054624)	Smgc (ENSRNOG00000037025)	AC108595.1 (ENSRNOG00000032420)	Lrrk2 (ENSRNOG00000004048)	Slc2a13 (ENSRNOG00000015741)	C7h12orf40 (ENSRNOG00000025898)	Abcd2 (ENSRNOG00000015538) ##22	Kif21a (ENSRNOG00000014844)	Cpne8 (ENSRNOG00000026128)	Alg10 (ENSRNOG00000014511)	Syt10 (ENSRNOG00000014296)	Rabl2 (ENSRNOG00000013947)	Acr (ENSRNOG00000029762)	Shank3 (ENSRNOG00000052296)	Arsa (ENSRNOG00000012953)	Mapk8ip2 (ENSRNOG00000032828)	ENSRNOG00000063153	Chkb (ENSRNOG00000011404)	Cpt1b (ENSRNOG00000010438)	Syce3 (ENSRNOG00000042056)	Klhdc7b (ENSRNOG00000032419)	Odf3b (ENSRNOG00000037060)
Upper Galilee mountains blind mole rat	MODERN SPECIES	668												ENSNGAG00000021742	Lrrk2 (ENSNGAG00000022979)	Slc2a13 (ENSNGAG00000016956)	ENSNGAG00000011942	Abcd2 (ENSNGAG00000023010) ##22	Kif21a (ENSNGAG00000023544)	Cpne8 (ENSNGAG00000024044)	Alg10b (ENSNGAG00000004690)	ENSNGAG00000001023	Syt10 (ENSNGAG00000014442)	Pkp2 (ENSNGAG00000003543)	Yars2 (ENSNGAG00000021477)	Dnm1l (ENSNGAG00000012978)	ENSNGAG00000010899	Fgd4 (ENSNGAG00000023777)
Lesser Egyptian jerboa	MODERN SPECIES	89	Prickle1 (ENSJJAG00000011701)	ENSJJAG00000014487	ENSJJAG00000021636	ENSJJAG00000023606	Yaf2 (ENSJJAG00000000324)	Gxylt1 (ENSJJAG00000010228)	ENSJJAG00000020445	ENSJJAG00000023385	Pdzrn4 (ENSJJAG00000000770) ##27	ENSJJAG00000013828	ENSJJAG00000015792	Cntn1 (ENSJJAG00000021782)	Lrrk2 (ENSJJAG00000013233)	Slc2a13 (ENSJJAG00000021456)	ENSJJAG00000000818	Abcd2 (ENSJJAG00000006865) ##22	Kif21a (ENSJJAG00000001646)	Cpne8 (ENSJJAG00000015994)	ENSJJAG00000004937	Aak1 (ENSJJAG00000011646)	Nfu1 (ENSJJAG00000022262)	ENSJJAG00000012483	Gfpt1 (ENSJJAG00000022727)	Antxr1 (ENSJJAG00000011767)	Gkn1 (ENSJJAG00000021899)	Gkn2 (ENSJJAG00000007374)	Gkn3 (ENSJJAG00000008849)	Bmp10 (ENSJJAG00000015538)	Arhgap25 (ENSJJAG00000019832)	Prokr1 (ENSJJAG00000012059)	Nid1 (ENSJJAG00000016000)
Kangaroo rat	MODERN SPECIES	488															Slc2a13 (ENSDORG00000027685)	Abcd2 (ENSDORG00000003158) ##22	Kif21a (ENSDORG00000002550)	Cpne8 (ENSDORG00000012517)	Alg10b (ENSDORG00000003470)	ENSDORG00000009982	Syt10 (ENSDORG00000000019)	ENSDORG00000027433	ENSDORG00000025328	ENSDORG00000014647	ENSDORG00000007729
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Sciuridae	ANCESTRAL SPECIES	15	ENSGT00940000168978	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000164528	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Marmotini	ANCESTRAL SPECIES	19	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b
Marmotini_b	ANCESTRAL SPECIES	11	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.y.a	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00940000158267	ENSGT00910000146950	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000162982	ENSGT00940000153678.a.a	ENSGT00390000006485.c.lc.b	ENSGT00940000153438.b
Arctic ground squirrel	MODERN SPECIES	129																ABCD2 (ENSUPAG00010018433) ##22	KIF21A (ENSUPAG00010018462)	CPNE8 (ENSUPAG00010019198)	ENSUPAG00010019216	SYT10 (ENSUPAG00010019220)	ENSUPAG00010019229	SCIMP (ENSUPAG00010019232)	RABEP1 (ENSUPAG00010019239)	NUP88 (ENSUPAG00010019368)	RPAIN (ENSUPAG00010019401)	C1QBP (ENSUPAG00010019445)	DHX33 (ENSUPAG00010019456)	DERL2 (ENSUPAG00010019469)	MIS12 (ENSUPAG00010019479)	ENSUPAG00010019484	NLRP1 (ENSUPAG00010019486)
Squirrel	MODERN SPECIES	207													CNTN1 (ENSSTOG00000015991)	LRRK2 (ENSSTOG00000000527)	SLC2A13 (ENSSTOG00000012574)	ABCD2 (ENSSTOG00000012764) ##22	KIF21A (ENSSTOG00000011688)	CPNE8 (ENSSTOG00000005472)	ENSSTOG00000025399	SYT10 (ENSSTOG00000022740)	PKP2 (ENSSTOG00000024732)	YARS2 (ENSSTOG00000011917)	DNM1L (ENSSTOG00000011898)	FGD4 (ENSSTOG00000012543)	BICD1 (ENSSTOG00000004236)	ENSSTOG00000032422	AMN1 (ENSSTOG00000008790)	ETFBKMT (ENSSTOG00000026094)	DENND5B (ENSSTOG00000007411)	ENSSTOG00000007097	CAPRIN2 (ENSSTOG00000004672)
Alpin marmot	MODERN SPECIES	34	TMEM117 (ENSMMMG00000022603)	TWF1 (ENSMMMG00000022600)	IRAK4 (ENSMMMG00000022596)	ENSMMMG00000022591	ADAMTS20 (ENSMMMG00000022568)	PRICKLE1 (ENSMMMG00000022552)	ENSMMMG00000022546	ZCRB1 (ENSMMMG00000022545)	YAF2 (ENSMMMG00000022539)	GXYLT1 (ENSMMMG00000022532)	ENSMMMG00000022530	PDZRN4 (ENSMMMG00000022528) ##27	CNTN1 (ENSMMMG00000022503)	LRRK2 (ENSMMMG00000022478)	SLC2A13 (ENSMMMG00000022471)	ABCD2 (ENSMMMG00000022441) ##22	KIF21A (ENSMMMG00000022225)	CPNE8 (ENSMMMG00000022203)	ENSMMMG00000022193	SYT10 (ENSMMMG00000022187)	ENSMMMG00000022176	PKP2 (ENSMMMG00000022136)	YARS2 (ENSMMMG00000022130)	DNM1L (ENSMMMG00000022062)	FGD4 (ENSMMMG00000022046)	BICD1 (ENSMMMG00000022030)	ENSMMMG00000022009	ENSMMMG00000022008	ENSMMMG00000021996	ENSMMMG00000021993	AMN1 (ENSMMMG00000021990)
Eurasian red squirrel	MODERN SPECIES	14	PUS7L (ENSSVLG00005024211)	ADAMTS20 (ENSSVLG00005024057)	ENSSVLG00005024012	PPHLN1 (ENSSVLG00005023941)	ZCRB1 (ENSSVLG00005023866)	YAF2 (ENSSVLG00005023809)	GXYLT1 (ENSSVLG00005023725)	ENSSVLG00005023701	ENSSVLG00005023688	PDZRN4 (ENSSVLG00005023595) ##27	CNTN1 (ENSSVLG00005023245)	ENSSVLG00005023091	LRRK2 (ENSSVLG00005023045)	SLC2A13 (ENSSVLG00005022999)	C12orf40 (ENSSVLG00005022853)	ABCD2 (ENSSVLG00005022770) ##22	KIF21A (ENSSVLG00005021698)	CPNE8 (ENSSVLG00005021341)	ENSSVLG00005021292	SYT10 (ENSSVLG00005021217)	PKP2 (ENSSVLG00005021133)	YARS2 (ENSSVLG00005021083)	DNM1L (ENSSVLG00005020928)	FGD4 (ENSSVLG00005020182)	ENSSVLG00005020064	BICD1 (ENSSVLG00005019995)	RESF1 (ENSSVLG00005019927)	ENSSVLG00005019891	ENSSVLG00005019844	AMN1 (ENSSVLG00005019716)	ETFBKMT (ENSSVLG00005019687)
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000158792	ENSGT00530000063554.b	ENSGT00940000158636	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061.p.z	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b ##27	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b	ENSGT00940000158848
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000042057	ENSHGLG00000038728	YAF2 (ENSHGLG00000001299)	GXYLT1 (ENSHGLG00000001208)	ENSHGLG00000001159	ENSHGLG00000040152	PDZRN4 (ENSHGLG00000049703) ##27	ENSHGLG00000007919	ENSHGLG00000047537	CNTN1 (ENSHGLG00000000930)	ENSHGLG00000045827	ENSHGLG00000032620	LRRK2 (ENSHGLG00000004477)	SLC2A13 (ENSHGLG00000007456)	ENSHGLG00000033676	ABCD2 (ENSHGLG00000012569) ##22	ENSHGLG00000018960	ENSHGLG00000044300	ENSHGLG00000016118	ENSHGLG00000049034	ENSHGLG00000006477	ENSHGLG00000007513	ENSHGLG00000020628	ENSHGLG00000005157	ALG10 (ENSHGLG00000042948)	ENSHGLG00000010318	ENSHGLG00000004697	ENSHGLG00000005218	ENSHGLG00000036554	PKP2 (ENSHGLG00000008295)	YARS2 (ENSHGLG00000009938)
Hystricomorpha_a	ANCESTRAL SPECIES	76													ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b	ENSGT00940000158848
Guinea pig	MODERN SPECIES	54														LRRK2 (ENSCPOG00000007935)	SLC2A13 (ENSCPOG00000010774)	ABCD2 (ENSCPOG00000010205) ##22	KIF21A (ENSCPOG00000010726)	CPNE8 (ENSCPOG00000008877)	ENSCPOG00000040138	SYT10 (ENSCPOG00000006918)	PKP2 (ENSCPOG00000012340)	YARS2 (ENSCPOG00000015276)	DNM1L (ENSCPOG00000015273)	FGD4 (ENSCPOG00000015271)	BICD1 (ENSCPOG00000001551)	ENSCPOG00000032610	ENSCPOG00000027414	ENSCPOG00000038662	AMN1 (ENSCPOG00000032967)	ENSCPOG00000008943	DENND5B (ENSCPOG00000005517)
Hystricomorpha_b	ANCESTRAL SPECIES	102													ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00390000002848	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b.b	ENSGT00390000018491	ENSGT00730000111305	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b	ENSGT00940000158848
Degu	MODERN SPECIES	62	RHBDD3 (ENSODEG00000017373)	ENSODEG00000017496	GAS2L1 (ENSODEG00000017194)	RASL10A (ENSODEG00000017393)	AP1B1 (ENSODEG00000017338)	NEFH (ENSODEG00000017433)	ENSODEG00000017650	NIPSNAP1 (ENSODEG00000017189)	ENSODEG00000017494	NF2 (ENSODEG00000017517)	CABP7 (ENSODEG00000017415)	ZMAT5 (ENSODEG00000017389)	ENSODEG00000017651	ASCC2 (ENSODEG00000017546)	ENSODEG00000017520	ENSODEG00000017459 ##22	KIF21A (ENSODEG00000017431)	ENSODEG00000017452	CPNE8 (ENSODEG00000017711)	ENSODEG00000020455	ENSODEG00000017594	SYT10 (ENSODEG00000017446)
Long-tailed chinchilla	MODERN SPECIES	212													LRRK2 (ENSCLAG00000000858)	SLC2A13 (ENSCLAG00000000454)	C12orf40 (ENSCLAG00000000532)	ABCD2 (ENSCLAG00000000619) ##22	KIF21A (ENSCLAG00000001397)	ENSCLAG00000000855	CPNE8 (ENSCLAG00000000899)	ENSCLAG00000000434	ENSCLAG00000000451	SYT10 (ENSCLAG00000000534)	PKP2 (ENSCLAG00000000587)	YARS2 (ENSCLAG00000002000)	DNM1L (ENSCLAG00000002548)	FGD4 (ENSCLAG00000001753)	BICD1 (ENSCLAG00000002981)	ENSCLAG00000003760	DENND5B (ENSCLAG00000004154)	SINHCAF (ENSCLAG00000001263)	CAPRIN2 (ENSCLAG00000001513)
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00390000011669	ENSGT00390000000121	ENSGT00390000018872	ENSGT00940000158917	ENSGT00940000155486	ENSGT00940000160716	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00950000183093.A.a	ENSGT00810000125439.B	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00390000012906	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000155870.b	ENSGT00940000158267	ENSGT00940000164528
Opossum	MODERN SPECIES	7	ENSMODG00000043567	SLC38A2 (ENSMODG00000018521)	ENSMODG00000025456	ENSMODG00000045497	ENSMODG00000018525	ARID2 (ENSMODG00000018527)	ENSMODG00000046199	DBX2 (ENSMODG00000018530)	NELL2 (ENSMODG00000018531)	ENSMODG00000018532	TMEM117 (ENSMODG00000050206)	ENSMODG00000047740	ENSMODG00000018535	IRAK4 (ENSMODG00000018536)	ENSMODG00000025457	ABCD2 (ENSMODG00000018538) ##22	ENSMODG00000039233	ENSMODG00000042610	ENSMODG00000018544	SLC2A13 (ENSMODG00000018552)	LRRK2 (ENSMODG00000018556)	RASSF8 (ENSMODG00000016548)	BHLHE41 (ENSMODG00000016551)	ENSMODG00000016554	ITPR2 (ENSMODG00000016591)	SMC1A (ENSMODG00000016607)	INTS13 (ENSMODG00000016614)	ENSMODG00000016618	ENSMODG00000045064	TM7SF3 (ENSMODG00000016621)	MED21 (ENSMODG00000047408)
Marsupialia_b	ANCESTRAL SPECIES	12	ENSGT00940000153969.a	ENSGT00390000011669	ENSGT00390000000121	ENSGT00390000018872	ENSGT00940000158917	ENSGT00940000155486	ENSGT00940000160716	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00950000183093.A.a	ENSGT00810000125439.B	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00390000012906	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000158899	ENSGT00940000155870.b	ENSGT00940000158267	ENSGT00940000164528	ENSGT00940000157529	ENSGT00390000016228	ENSGT00730000111061	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00940000155915	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504.a	ENSGT00940000155504.b
Diprotodontia	ANCESTRAL SPECIES	84	ENSGT00950000182994.B.a.b	ENSGT00940000153969.a	ENSGT00390000011669	ENSGT00390000000121	ENSGT00390000018872	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00950000183093.A.a	ENSGT00810000125439.B	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00390000012906	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000158899	ENSGT00940000155870.b	ENSGT00940000158267	ENSGT00940000164528
Diprotodontia_a	ANCESTRAL SPECIES	81	ENSGT00940000153969.a	ENSGT00390000011669	ENSGT00390000000121	ENSGT00990000207683	ENSGT00390000018872	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00950000183093.A.a	ENSGT00810000125439.B	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00390000012906	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000158899	ENSGT00940000155870.b	ENSGT00940000158267	ENSGT00940000164528
Common wonbat	MODERN SPECIES	902	ENSVURG00010008945	ENSVURG00010008921	SLC38A4 (ENSVURG00010008884)	SLC38A2 (ENSVURG00010008802)	SCAF11 (ENSVURG00010008762)	ARID2 (ENSVURG00010008698)	DBX2 (ENSVURG00010008685)	NELL2 (ENSVURG00010004396)	ENSVURG00010004086	ENSVURG00010004077	TMEM117 (ENSVURG00010004060)	TWF1 (ENSVURG00010004043)	IRAK4 (ENSVURG00010004016)	ENSVURG00010004004	ENSVURG00010003985	ABCD2 (ENSVURG00010003955) ##22	ENSVURG00010003947	KIF21A (ENSVURG00010003927)	SYT10 (ENSVURG00010003868)	ENSVURG00010003856	SLC2A13 (ENSVURG00010003839)	LRRK2 (ENSVURG00010003730)
koala	MODERN SPECIES	245	FBH1 (ENSPCIG00000023460)	ENSPCIG00000023461	ENSPCIG00000023462	ENSPCIG00000023463	ENSPCIG00000022582	SLC38A4 (ENSPCIG00000011190)	SLC38A2 (ENSPCIG00000022604)	SCAF11 (ENSPCIG00000022593)	ARID2 (ENSPCIG00000022575)	DBX2 (ENSPCIG00000022571)	NELL2 (ENSPCIG00000029268)	TMEM117 (ENSPCIG00000029262)	TWF1 (ENSPCIG00000029260)	IRAK4 (ENSPCIG00000036661)	ENSPCIG00000029256	ENSPCIG00000029254 ##22	KIF21A (ENSPCIG00000028969)	SYT10 (ENSPCIG00000028932)	SLC2A13 (ENSPCIG00000010778)	LRRK2 (ENSPCIG00000010782)	ENSPCIG00000009653
Wallaby	MODERN SPECIES	8190																ABCD2 (ENSMEUG00000007564) ##22
Tasmanian devil	MODERN SPECIES	4	FBH1 (ENSSHAG00000009789)	ENSSHAG00000010627	ENSSHAG00000030162	ENSSHAG00000003400	SLC38A2 (ENSSHAG00000007691)	SLC38A1 (ENSSHAG00000008623)	SCAF11 (ENSSHAG00000009963)	ARID2 (ENSSHAG00000010388)	DBX2 (ENSSHAG00000012659)	NELL2 (ENSSHAG00000013085)	ENSSHAG00000029348	TMEM117 (ENSSHAG00000013679)	TWF1 (ENSSHAG00000014323)	ENSSHAG00000014468	ENSSHAG00000027379	ENSSHAG00000014754 ##22	ENSSHAG00000015274	ENSSHAG00000015623	ENSSHAG00000021585	ENSSHAG00000016549	ENSSHAG00000016997	ENSSHAG00000001702	ENSSHAG00000026064	ZCRB1 (ENSSHAG00000006273)	ENSSHAG00000007145	ENSSHAG00000008556	BEST3 (ENSSHAG00000006449)	LRRC10 (ENSSHAG00000005775)	CCT2 (ENSSHAG00000005384)	FRS2 (ENSSHAG00000025100)	YEATS4 (ENSSHAG00000027594)
Platypus	MODERN SPECIES	11	TWF1 (ENSOANG00000007091)	IRAK4 (ENSOANG00000001905)	PUS7L (ENSOANG00000021234)	ADAMTS20 (ENSOANG00000004962)	PRICKLE1 (ENSOANG00000011364)	PPHLN1 (ENSOANG00000041653)	ZCRB1 (ENSOANG00000038392)	YAF2 (ENSOANG00000050454)	GXYLT1 (ENSOANG00000003428)	PDZRN4 (ENSOANG00000003429) ##27	CNTN1 (ENSOANG00000007366)	LRRK2 (ENSOANG00000011237)	ENSOANG00000042749	SLC2A13 (ENSOANG00000039346)	ENSOANG00000044709	ABCD2 (ENSOANG00000040062) ##22	KIF21A (ENSOANG00000014507)	ENSOANG00000031156	CPNE8 (ENSOANG00000002877)	ENSOANG00000038075	TPRKB (ENSOANG00000050189)	SYT10 (ENSOANG00000038829)	ENSOANG00000043805	PKP2 (ENSOANG00000020593)	ENSOANG00000047335	DNM1L (ENSOANG00000008924)	FGD4 (ENSOANG00000004404)	ENSOANG00000039362	BICD1 (ENSOANG00000009743)	ENSOANG00000046141	AMN1 (ENSOANG00000002621)
Sauria	ANCESTRAL SPECIES	4	ENSGT00940000165427	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000179161	ENSGT00740000116347	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000168034	ENSGT00390000000950.c.a	ENSGT00530000063808.a	ENSGT00530000063435.a	ENSGT00940000156976	ENSGT00940000159840
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00940000165427	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000179161	ENSGT00740000116347	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B
Cryptodira	ANCESTRAL SPECIES	11	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00740000116347	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00940000158160	ENSGT00390000011239	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b.c ##22	ENSGT00940000155323.a	ENSGT00960000189584	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B
Emydidae	ANCESTRAL SPECIES	10	ENSGT00940000158160	ENSGT00390000011239	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b.c ##22	ENSGT00940000155323.a	ENSGT00960000189584	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B
painted turtle	MODERN SPECIES	13	CCNT2 (ENSCPBG00000010223)	ENSCPBG00000010231	RAB3GAP1 (ENSCPBG00000010240)	ZRANB3 (ENSCPBG00000010250)	ENSCPBG00000010263	DPP10 (ENSCPBG00000010272)	C1QL2 (ENSCPBG00000010491)	EN1 (ENSCPBG00000010495)	INSIG2 (ENSCPBG00000010499)	CCDC93 (ENSCPBG00000010511)	ENSCPBG00000010527	DDX18 (ENSCPBG00000010529)	ERGIC2 (ENSCPBG00000010534)	LRRK2 (ENSCPBG00000010589)	SLC2A13 (ENSCPBG00000010657)	ABCD2 (ENSCPBG00000010664) ##22	KIF21A (ENSCPBG00000010980)	ENSCPBG00000011601	CPNE8 (ENSCPBG00000011604)	ENSCPBG00000011611	TPRKB (ENSCPBG00000011614)	GTSE1 (ENSCPBG00000011618)	TRMU (ENSCPBG00000011621)	CELSR1 (ENSCPBG00000011625)	GRAMD4 (ENSCPBG00000011644)	CERK (ENSCPBG00000011667)	TBC1D22A (ENSCPBG00000011676)	KCNA4 (ENSCPBG00000011682)	FSHB (ENSCPBG00000011683)	ARL14EP (ENSCPBG00000011685)	MPPED2 (ENSCPBG00000011688)
Three-toed box turtle	MODERN SPECIES	28	PIK3CG (ENSTMTG00000004569)	PRKAR2B (ENSTMTG00000004602)	HBP1 (ENSTMTG00000004641)	COG5 (ENSTMTG00000004684)	GPR22 (ENSTMTG00000004810)	DUS4L (ENSTMTG00000004820)	SLC26A4 (ENSTMTG00000004862)	ENSTMTG00000005071	SLC26A3 (ENSTMTG00000005090)	DLD (ENSTMTG00000005252)	LAMB1 (ENSTMTG00000006316)	LAMB4 (ENSTMTG00000008499)	ERGIC2 (ENSTMTG00000010226)	LRRK2 (ENSTMTG00000010313)	SLC2A13 (ENSTMTG00000011252)	ENSTMTG00000011261 ##22	KIF21A (ENSTMTG00000011297)	ENSTMTG00000011496	CPNE8 (ENSTMTG00000011646)	ENSTMTG00000013680	TPRKB (ENSTMTG00000013690)	GTSE1 (ENSTMTG00000013701)	TRMU (ENSTMTG00000013737)	CELSR1 (ENSTMTG00000013945)	GRAMD4 (ENSTMTG00000017550)	CERK (ENSTMTG00000017889)	TBC1D22A (ENSTMTG00000017916)	TAFA5 (ENSTMTG00000017961)	BRD1 (ENSTMTG00000017975)	ZBED4 (ENSTMTG00000018000)	ALG12 (ENSTMTG00000018006)
Testudinidae	ANCESTRAL SPECIES	12	ENSGT00940000158160	ENSGT00390000011239	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a.n	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b.c ##22	ENSGT01000000220896	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B
Goode s thornscrub tortoise	MODERN SPECIES		GPR22 (ENSGEVG00005001734)	ENSGEVG00005001713	ENSGEVG00005001649	COG5 (ENSGEVG00005001409)	DUS4L (ENSGEVG00005001352)	BCAP29 (ENSGEVG00005001334) ##21	ENSGEVG00005001293	ENSGEVG00005001272	SLC26A3 (ENSGEVG00005001234)	DLD (ENSGEVG00005001072)	LAMB1 (ENSGEVG00005001019)	LAMB4 (ENSGEVG00005000928)	ERGIC2 (ENSGEVG00005000858)	LRRK2 (ENSGEVG00005000771)	SLC2A13 (ENSGEVG00005000718)	ABCD2 (ENSGEVG00005000692) ##22	ENSGEVG00005000674	KIF21A (ENSGEVG00005000447)	CPNE8 (ENSGEVG00005000276)	ENSGEVG00005000225	TPRKB (ENSGEVG00005000200)	GTSE1 (ENSGEVG00005000145)	TRMU (ENSGEVG00005000080)	CELSR1 (ENSGEVG00005000033)	GRAMD4 (ENSGEVG00005020685)	CERK (ENSGEVG00005020680)	TBC1D22A (ENSGEVG00005020669)	TAFA5 (ENSGEVG00005020666)	BRD1 (ENSGEVG00005020656)	ZBED4 (ENSGEVG00005020651)	ALG12 (ENSGEVG00005020648)
Abingdon island giant tortoise	MODERN SPECIES	2269						ENSCABG00000016698	BCAP29 (ENSCABG00000016697) ##21	ENSCABG00000016696	SLC26A3 (ENSCABG00000016664)	DLD (ENSCABG00000016636)	LAMB1 (ENSCABG00000016621)	LAMB4 (ENSCABG00000016608)	ERGIC2 (ENSCABG00000016598)	LRRK2 (ENSCABG00000016574)	SLC2A13 (ENSCABG00000016568)	ABCD2 (ENSCABG00000016565) ##22	ENSCABG00000016559	KIF21A (ENSCABG00000013462)
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.b.d ##22
Emydidae	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.b.d ##22
Three-toed box turtle	MODERN SPECIES	406																ENSTMTG00000012073 ##22
Chinese turtle	MODERN SPECIES	871	GPR22 (ENSPSIG00000013473)	DUS4L (ENSPSIG00000013488)	BCAP29 (ENSPSIG00000013744) ##21	SLC26A4 (ENSPSIG00000014085)	ENSPSIG00000016128	SLC26A3 (ENSPSIG00000016271)	DLD (ENSPSIG00000007398)	LAMB1 (ENSPSIG00000008782)	ENSPSIG00000010235	ENSPSIG00000010259	ERGIC2 (ENSPSIG00000010679)	LRRK2 (ENSPSIG00000010969)	ENSPSIG00000011218	SLC2A13 (ENSPSIG00000011230)	ENSPSIG00000011235	ABCD2 (ENSPSIG00000011483) ##22	KIF21A (ENSPSIG00000011715)	ENSPSIG00000012407	CPNE8 (ENSPSIG00000012625)	ENSPSIG00000012971	ENSPSIG00000012995	TPRKB (ENSPSIG00000013001)	ENSPSIG00000013007	TRMU (ENSPSIG00000013020)	CELSR1 (ENSPSIG00000013089)	ENSPSIG00000000868	GRAMD4 (ENSPSIG00000013449)	CERK (ENSPSIG00000013459)	ENSPSIG00000013551
Archosauria	ANCESTRAL SPECIES	4	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT00940000165427	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT01100000263474.a.b.b.j.b.b.b.b.a	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365
Aves	ANCESTRAL SPECIES	1	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT00940000165427	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT01100000263474.a.b.b.j.b.b.b.b.a	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365
Neognathae	ANCESTRAL SPECIES	3	ENSGT00940000165427	ENSGT00390000004586	ENSGT01050000244841.A.b.b.a	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00960000189369	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT01100000263474.a.b.b.j.b.b.b.b.a	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00390000011239	ENSGT00390000004586	ENSGT01050000244841.A.b.b.a	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00960000189369	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT01100000263474.a.b.b.j.b.b.b.b.a	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236
Neognathae_c	ANCESTRAL SPECIES		ENSGT00940000158160	ENSGT00390000011239	ENSGT00390000004586	ENSGT01050000244841.A.b.b.a	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00960000189369	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT01100000263474.a.b.b.j.b.b.b.b.a	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365
Golden eagle	MODERN SPECIES	21	COG5 (ENSACCG00020009290)	GPR22 (ENSACCG00020009377)	DUS4L (ENSACCG00020009390)	BCAP29 (ENSACCG00020009404) ##21	SLC26A4 (ENSACCG00020009477)	ENSACCG00020009535	SLC26A3 (ENSACCG00020009635)	DLD (ENSACCG00020009692)	LAMB1 (ENSACCG00020009720)	LAMB4 (ENSACCG00020009783)	ERGIC2 (ENSACCG00020009831)	ENSACCG00020009862	ENSACCG00020009881	ENSACCG00020009890	SLC2A13 (ENSACCG00020009905)	ABCD2 (ENSACCG00020009923) ##22	KIF21A (ENSACCG00020009999)	CPNE8 (ENSACCG00020010092)	ENSACCG00020010104	ENSACCG00020010114	TPRKB (ENSACCG00020010121)	GTSE1 (ENSACCG00020010136)	TRMU (ENSACCG00020010148)	CELSR1 (ENSACCG00020010464)	ENSACCG00020010765	GRAMD4 (ENSACCG00020010780)	CERK (ENSACCG00020010802)	TBC1D22A (ENSACCG00020010830)	TAFA5 (ENSACCG00020010862)	BRD1 (ENSACCG00020010880)	ZBED4 (ENSACCG00020010902)
Kakapo	MODERN SPECIES	20	PRKAR2B (ENSSHBG00005011594)	HBP1 (ENSSHBG00005011610)	COG5 (ENSSHBG00005011688)	GPR22 (ENSSHBG00005012148)	DUS4L (ENSSHBG00005012164)	BCAP29 (ENSSHBG00005012181) ##21	SLC26A4 (ENSSHBG00005012224)	ENSSHBG00005012255	SLC26A3 (ENSSHBG00005012315)	DLD (ENSSHBG00005012465)	LAMB1 (ENSSHBG00005012496)	LAMB4 (ENSSHBG00005012555)	ERGIC2 (ENSSHBG00005012605)	LRRK2 (ENSSHBG00005012667)	SLC2A13 (ENSSHBG00005012844)	ABCD2 (ENSSHBG00005012880) ##22	KIF21A (ENSSHBG00005012966)	CPNE8 (ENSSHBG00005013196)	ENSSHBG00005013333	ENSSHBG00005013337	TPRKB (ENSSHBG00005013347)	ENSSHBG00005013358	TRMU (ENSSHBG00005013371)	CELSR1 (ENSSHBG00005013719)	ENSSHBG00005016476	GRAMD4 (ENSSHBG00005016497)	CERK (ENSSHBG00005016526)	TBC1D22A (ENSSHBG00005016531)	TAFA5 (ENSSHBG00005016534)	BRD1 (ENSSHBG00005016538)	ZBED4 (ENSSHBG00005016547)
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00390000011239	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00960000189369	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT01100000263474.a.b.b.j.b.b.b.b.a	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236
Great tit	MODERN SPECIES	10	HBP1 (ENSPMJG00000004791)	COG5 (ENSPMJG00000004793)	GPR22 (ENSPMJG00000004798)	DUS4L (ENSPMJG00000004799)	BCAP29 (ENSPMJG00000004803) ##21	SLC26A4 (ENSPMJG00000004831)	ENSPMJG00000004923	SLC26A3 (ENSPMJG00000004928)	DLD (ENSPMJG00000005312)	LAMB1 (ENSPMJG00000005314)	LAMB4 (ENSPMJG00000005340)	ERGIC2 (ENSPMJG00000008591)	LRRK2 (ENSPMJG00000008594)	SLC2A13 (ENSPMJG00000008679)	ENSPMJG00000008682	ABCD2 (ENSPMJG00000008685) ##22	KIF21A (ENSPMJG00000008710)	ENSPMJG00000008730	CPNE8 (ENSPMJG00000008735)	ENSPMJG00000008737	ENSPMJG00000008738	TPRKB (ENSPMJG00000008739)	GTSE1 (ENSPMJG00000008740)	CELSR1 (ENSPMJG00000008757)	ENSPMJG00000009341	GRAMD4 (ENSPMJG00000009342)	CERK (ENSPMJG00000009357)	TBC1D22A (ENSPMJG00000009364)	TAFA5 (ENSPMJG00000009419)	BRD1 (ENSPMJG00000009437)	ZBED4 (ENSPMJG00000009445)
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00390000011239	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00960000189369	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT01100000263474.a.b.b.j.b.b.b.b.a	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236
Flycatcher	MODERN SPECIES	10	COG5 (ENSFALG00000010253)	GPR22 (ENSFALG00000014670)	DUS4L (ENSFALG00000010246)	SLC26A4 (ENSFALG00000010232)	ENSFALG00000010224	SLC26A3 (ENSFALG00000010181)	ENSFALG00000024986	DLD (ENSFALG00000010136)	LAMB1 (ENSFALG00000010123)	LAMB4 (ENSFALG00000010111)	ENSFALG00000014653	ENSFALG00000010103	LRRK2 (ENSFALG00000010099)	SLC2A13 (ENSFALG00000010088)	ENSFALG00000010080	ABCD2 (ENSFALG00000010075) ##22	KIF21A (ENSFALG00000010069)	ENSFALG00000010058	CPNE8 (ENSFALG00000010050)	ENSFALG00000010049	ENSFALG00000026742	GTSE1 (ENSFALG00000010042)	TRMU (ENSFALG00000010035)	CELSR1 (ENSFALG00000009998)	ENSFALG00000026084	GRAMD4 (ENSFALG00000009977)	CERK (ENSFALG00000009962)	TBC1D22A (ENSFALG00000009939)	TAFA5 (ENSFALG00000023782)	BRD1 (ENSFALG00000009618)	ZBED4 (ENSFALG00000015280)
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00390000011239	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00960000189369	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT01100000263474.a.b.b.j.b.b.b.b.a	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236
Medium ground finch	MODERN SPECIES	57	PRKAR2B (ENSGFOG00000000118)	HBP1 (ENSGFOG00000014430)	GPR22 (ENSGFOG00000014427)	COG5 (ENSGFOG00000014410)	DUS4L (ENSGFOG00000014403)	BCAP29 (ENSGFOG00000014402) ##21	SLC26A4 (ENSGFOG00000014383)	ENSGFOG00000014378	SLC26A3 (ENSGFOG00000014348)	DLD (ENSGFOG00000014330)	LAMB1 (ENSGFOG00000014309)	LAMB4 (ENSGFOG00000014299)	ERGIC2 (ENSGFOG00000014290)	LRRK2 (ENSGFOG00000014246)	SLC2A13 (ENSGFOG00000014218)	ABCD2 (ENSGFOG00000014216) ##22	KIF21A (ENSGFOG00000013862)	ENSGFOG00000013820	CPNE8 (ENSGFOG00000013794)	ENSGFOG00000013774	TPRKB (ENSGFOG00000013769)	GTSE1 (ENSGFOG00000013761)	TRMU (ENSGFOG00000013758)	CELSR1 (ENSGFOG00000013410)	ENSGFOG00000013370	GRAMD4 (ENSGFOG00000013331)	CERK (ENSGFOG00000013315)	TBC1D22A (ENSGFOG00000013311)
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00390000011239	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00960000189369	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT01100000263474.a.b.b.j.b.b.b.b.a	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236
Common canary	MODERN SPECIES	6	HBP1 (ENSSCAG00000006748)	GPR22 (ENSSCAG00000006746)	COG5 (ENSSCAG00000006613)	DUS4L (ENSSCAG00000006586)	BCAP29 (ENSSCAG00000006581) ##21	SLC26A4 (ENSSCAG00000006525)	ENSSCAG00000006500	SLC26A3 (ENSSCAG00000006482)	DLD (ENSSCAG00000006369)	LAMB1 (ENSSCAG00000005291)	LAMB4 (ENSSCAG00000005067)	SF3B2 (ENSSCAG00000005053)	ERGIC2 (ENSSCAG00000005036)	LRRK2 (ENSSCAG00000005006)	SLC2A13 (ENSSCAG00000004993)	ABCD2 (ENSSCAG00000004973) ##22	KIF21A (ENSSCAG00000004903)	ENSSCAG00000004873	CPNE8 (ENSSCAG00000004854)	ENSSCAG00000004843	TPRKB (ENSSCAG00000004837)	GTSE1 (ENSSCAG00000004829)	TRMU (ENSSCAG00000004787)	CELSR1 (ENSSCAG00000004429)	ENSSCAG00000004342	GRAMD4 (ENSSCAG00000004331)	CERK (ENSSCAG00000004284)	TBC1D22A (ENSSCAG00000004209)	TAFA5 (ENSSCAG00000004166)	BRD1 (ENSSCAG00000004135)	ZBED4 (ENSSCAG00000004121)
Zebra finch	MODERN SPECIES	11	HBP1 (ENSTGUG00000003100)	COG5 (ENSTGUG00000003116)	GPR22 (ENSTGUG00000003123)	DUS4L (ENSTGUG00000003124)	BCAP29 (ENSTGUG00000003129) ##21	SLC26A4 (ENSTGUG00000003133)	ENSTGUG00000003173	SLC26A3 (ENSTGUG00000003181)	DLD (ENSTGUG00000003229)	LAMB1 (ENSTGUG00000003257)	LAMB4 (ENSTGUG00000023873)	ERGIC2 (ENSTGUG00000003331)	LRRK2 (ENSTGUG00000003353)	SLC2A13 (ENSTGUG00000003415)	ENSTGUG00000021015	ABCD2 (ENSTGUG00000003429) ##22	KIF21A (ENSTGUG00000003457)	ENSTGUG00000003532	CPNE8 (ENSTGUG00000003596)	ENSTGUG00000026305	ENSTGUG00000003649	TPRKB (ENSTGUG00000020604)	GTSE1 (ENSTGUG00000003660)	TRMU (ENSTGUG00000003663)	CELSR1 (ENSTGUG00000003678)	ENSTGUG00000023605	GRAMD4 (ENSTGUG00000003733)	CERK (ENSTGUG00000003773)	TBC1D22A (ENSTGUG00000003790)	ENSTGUG00000025236	TAFA5 (ENSTGUG00000003824)
Galloanserae	ANCESTRAL SPECIES	3	ENSGT01030000234518.A.b	ENSGT00940000165427	ENSGT00390000004586	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00960000189369	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT01100000263474.a.b.b.j.b.b.b.b.a	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236
Anatidae	ANCESTRAL SPECIES	28	ENSGT00390000011239	ENSGT01030000234518.A.b	ENSGT00390000004586	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00960000189369	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT01100000263474.a.b.b.j.b.b.b.b.a	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236
Pink-footed goose	MODERN SPECIES	213	HBP1 (ENSABRG00000023136)	ENSABRG00000023135	DUS4L (ENSABRG00000023134)	BCAP29 (ENSABRG00000023133) ##21	COG5 (ENSABRG00000023132)	SLC26A4 (ENSABRG00000023131)	ENSABRG00000023130	SLC26A3 (ENSABRG00000023129)	DLD (ENSABRG00000023128)	LAMB1 (ENSABRG00000023127)	LAMB4 (ENSABRG00000023126)	ERGIC2 (ENSABRG00000023124)	LRRK2 (ENSABRG00000023123)	SLC2A13 (ENSABRG00000023121)	ENSABRG00000023120	ABCD2 (ENSABRG00000023119) ##22
Duck	MODERN SPECIES		HBP1 (ENSAPLG00000007110)	COG5 (ENSAPLG00000007291)	ENSAPLG00000007636	DUS4L (ENSAPLG00000007641)	BCAP29 (ENSAPLG00000007986) ##21	SLC26A4 (ENSAPLG00000008089)	ENSAPLG00000008876	SLC26A3 (ENSAPLG00000009002)	DLD (ENSAPLG00000009964)	LAMB1 (ENSAPLG00000010460)	ENSAPLG00000025196	ERGIC2 (ENSAPLG00000012035)	LRRK2 (ENSAPLG00000012447)	SLC2A13 (ENSAPLG00000030661)	ENSAPLG00000025880	ABCD2 (ENSAPLG00000013822) ##22	KIF21A (ENSAPLG00000014318)	ENSAPLG00000020312	CPNE8 (ENSAPLG00000015941)	ENSAPLG00000023841	ENSAPLG00000016352	TPRKB (ENSAPLG00000002009)	GTSE1 (ENSAPLG00000016363)	TRMU (ENSAPLG00000016380)	CELSR1 (ENSAPLG00000016414)	ENSAPLG00000016564	GRAMD4 (ENSAPLG00000002925)	CERK (ENSAPLG00000003665)	TBC1D22A (ENSAPLG00000004220)	TAFA5 (ENSAPLG00000029978)	ENSAPLG00000017374
Phasianidae	ANCESTRAL SPECIES		ENSGT00390000011239	ENSGT00940000165427	ENSGT00390000004586	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a.p	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A.f	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a.l	ENSGT00940000155323.a.k.a	ENSGT00940000164750	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT01100000263474.a.b.b.j.b.b.b.b.a	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236
Japanese quail	MODERN SPECIES		ENSCJPG00005006646	HBP1 (ENSCJPG00005006658)	COG5 (ENSCJPG00005006745)	ENSCJPG00005006777	DUS4L (ENSCJPG00005006778)	BCAP29 (ENSCJPG00005006779) ##21	SLC26A4 (ENSCJPG00005006781)	ENSCJPG00005006782	SLC26A3 (ENSCJPG00005006783)	DLD (ENSCJPG00005006966)	LAMB1 (ENSCJPG00005006991)	LAMB4 (ENSCJPG00005006997)	ERGIC2 (ENSCJPG00005006998)	LRRK2 (ENSCJPG00005007000)	SLC2A13 (ENSCJPG00005007311)	ABCD2 (ENSCJPG00005007316) ##22	KIF21A (ENSCJPG00005007317)	ENSCJPG00005008031	CPNE8 (ENSCJPG00005008073)	ENSCJPG00005008074	GTSE1 (ENSCJPG00005008075)	TRMU (ENSCJPG00005008076)	CELSR1 (ENSCJPG00005008086)	ENSCJPG00005008091	GRAMD4 (ENSCJPG00005008092)	CERK (ENSCJPG00005008118)	TBC1D22A (ENSCJPG00005008119)	TAFA5 (ENSCJPG00005008172)	BRD1 (ENSCJPG00005008254)	ZBED4 (ENSCJPG00005008348)	ALG12 (ENSCJPG00005008349)
Phasianidae_b	ANCESTRAL SPECIES	9	ENSGT00390000011239	ENSGT00940000165427	ENSGT00390000004586	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a.p	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A.f	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00940000168660	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a.l	ENSGT00940000155323.a.k.a	ENSGT00940000164750.a	ENSGT00940000164750.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT01100000263474.a.b.b.j.b.b.b.b.a	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b
Turkey	DUPLICATION
Turkey	MODERN SPECIES		ENSMGAG00000007731	ENSMGAG00000007700	GRAMD4 (ENSMGAG00000007665)	ENSMGAG00000021044	ENSMGAG00000018951	ENSMGAG00000007550	ENSMGAG00000007564	ENSMGAG00000021742	ENSMGAG00000007521	ENSMGAG00000007514	ENSMGAG00000007385	ENSMGAG00000019887	ENSMGAG00000007453	ENSMGAG00000007272	ENSMGAG00000019572 ##22	ENSMGAG00000007227 ##22	ENSMGAG00000022050	ENSMGAG00000007137	ENSMGAG00000007098	ENSMGAG00000022124	LAMB4 (ENSMGAG00000006937)	DLD (ENSMGAG00000009904)	ENSMGAG00000009954	ENSMGAG00000009832	ENSMGAG00000009839	ENSMGAG00000017778	ENSMGAG00000009777	ENSMGAG00000009722 ##21	ENSMGAG00000009714	ENSMGAG00000017571	ENSMGAG00000017569
Turkey	MODERN SPECIES		ENSMGAG00000018229	ENSMGAG00000007731	ENSMGAG00000007700	GRAMD4 (ENSMGAG00000007665)	ENSMGAG00000021044	ENSMGAG00000018951	ENSMGAG00000007550	ENSMGAG00000007564	ENSMGAG00000021742	ENSMGAG00000007521	ENSMGAG00000007514	ENSMGAG00000007385	ENSMGAG00000019887	ENSMGAG00000007453	ENSMGAG00000007272	ENSMGAG00000019572 ##22	ENSMGAG00000007227 ##22	ENSMGAG00000022050	ENSMGAG00000007137	ENSMGAG00000007098	ENSMGAG00000022124	LAMB4 (ENSMGAG00000006937)	DLD (ENSMGAG00000009904)	ENSMGAG00000009954	ENSMGAG00000009832	ENSMGAG00000009839	ENSMGAG00000017778	ENSMGAG00000009777	ENSMGAG00000009722 ##21	ENSMGAG00000009714	ENSMGAG00000017571
Chicken	MODERN SPECIES		HBP1 (ENSGALG00010009081)	COG5 (ENSGALG00010009115)	GPR22 (ENSGALG00010009188)	DUS4L (ENSGALG00010009213)	BCAP29 (ENSGALG00010009243) ##21	SLC26A4 (ENSGALG00010009254)	CBLL1 (ENSGALG00010009275)	SLC26A3 (ENSGALG00010009315)	DLD (ENSGALG00010009326)	LAMB1 (ENSGALG00010009336)	LAMB4 (ENSGALG00010010829)	ERGIC2 (ENSGALG00010009348)	LRRK2 (ENSGALG00010009361)	SLC2A13 (ENSGALG00010008134)	ENSGALG00010008139	ABCD2 (ENSGALG00010008148) ##22	KIF21A (ENSGALG00010008171)	ENSGALG00010008060	ENSGALG00010008076	CPNE8 (ENSGALG00010008087)	ALG10 (ENSGALG00010008183)	TPRKB (ENSGALG00010008199)	GTSE1 (ENSGALG00010008212)	TRMU (ENSGALG00010008230)	CELSR1 (ENSGALG00010008275)	HIST1H2B5L (ENSGALG00010008596)	GRAMD4 (ENSGALG00010008745)	CERK (ENSGALG00010008010)	TBC1D22A (ENSGALG00010008025)	ENSGALG00010010468	TAFA5 (ENSGALG00010008515)
African ostrich	MODERN SPECIES	302	HBP1 (ENSSCUG00000001248)	GPR22 (ENSSCUG00000001246)	COG5 (ENSSCUG00000001242)	DUS4L (ENSSCUG00000001233)	BCAP29 (ENSSCUG00000001231) ##21	SLC26A4 (ENSSCUG00000001226)	ENSSCUG00000001216	SLC26A3 (ENSSCUG00000001195)	DLD (ENSSCUG00000001185)	LAMB1 (ENSSCUG00000001107)	ENSSCUG00000001007	LAMB4 (ENSSCUG00000000979)	ERGIC2 (ENSSCUG00000000948)	LRRK2 (ENSSCUG00000000935)	SLC2A13 (ENSSCUG00000000914)	ABCD2 (ENSSCUG00000000907) ##22	KIF21A (ENSSCUG00000000900)	ENSSCUG00000000895	CPNE8 (ENSSCUG00000000893)	ENSSCUG00000000891	TPRKB (ENSSCUG00000000890)	GTSE1 (ENSSCUG00000000886)	TRMU (ENSSCUG00000000884)	ENSSCUG00000000882	CELSR1 (ENSSCUG00000000843)	ENSSCUG00000000836	GRAMD4 (ENSSCUG00000000835)	CERK (ENSSCUG00000000833)	TBC1D22A (ENSSCUG00000000832)
Australian saltwater crocodile	MODERN SPECIES	49	PRKAR2B (ENSCPRG00005014049)	HBP1 (ENSCPRG00005014047)	GPR22 (ENSCPRG00005014043)	COG5 (ENSCPRG00005014024)	DUS4L (ENSCPRG00005013996)	SLC26A4 (ENSCPRG00005013753)	ENSCPRG00005013707	SLC26A3 (ENSCPRG00005013670)	DLD (ENSCPRG00005013648)	LAMB1 (ENSCPRG00005013605)	LAMB4 (ENSCPRG00005013583)	ERGIC2 (ENSCPRG00005013576)	ENSCPRG00005013572	ENSCPRG00005013568	SLC2A13 (ENSCPRG00005013544)	ABCD2 (ENSCPRG00005013520) ##22	KIF21A (ENSCPRG00005012166)	ENSCPRG00005011940	ENSCPRG00005011897	ENSCPRG00005011889	CPNE8 (ENSCPRG00005011872)	ENSCPRG00005011797	ENSCPRG00005011792	GTSE1 (ENSCPRG00005011785)	TRMU (ENSCPRG00005011781)	ENSCPRG00005011779	CELSR1 (ENSCPRG00005011776)	ENSCPRG00005011748	GRAMD4 (ENSCPRG00005011723)	CERK (ENSCPRG00005011604)	TBC1D22A (ENSCPRG00005011600)
Lepidosauria	ANCESTRAL SPECIES	31	ENSGT00940000158160	ENSGT00390000011239	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000168034	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B
tuatara	MODERN SPECIES	1067	HBP1 (ENSSPUG00000019157)	COG5 (ENSSPUG00000019151)	GPR22 (ENSSPUG00000019146)	ENSSPUG00000019144	DUS4L (ENSSPUG00000019140)	BCAP29 (ENSSPUG00000019137) ##21	SLC26A4 (ENSSPUG00000019133)	ENSSPUG00000019129	SLC26A3 (ENSSPUG00000019107)	DLD (ENSSPUG00000019070)	LAMB1 (ENSSPUG00000019059)	LAMB4 (ENSSPUG00000019041)	ERGIC2 (ENSSPUG00000019014)	LRRK2 (ENSSPUG00000018947)	SLC2A13 (ENSSPUG00000018908)	ABCD2 (ENSSPUG00000018898) ##22	KIF21A (ENSSPUG00000017901)	CPNE8 (ENSSPUG00000017175)	ENSSPUG00000017165	TPRKB (ENSSPUG00000017156)	ENSSPUG00000017147	ENSSPUG00000017141	ENSSPUG00000017136	TRMU (ENSSPUG00000017123)	CELSR1 (ENSSPUG00000016972)	GRAMD4 (ENSSPUG00000016883)	ENSSPUG00000016874	CERK (ENSSPUG00000016861)	TBC1D22A (ENSSPUG00000016845)	ENSSPUG00000016831	ENSSPUG00000016793
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000158160	ENSGT00390000011239	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00390000011863.d ##21	ENSGT00550000074907	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Laterata	ANCESTRAL SPECIES	6	ENSGT00940000158160	ENSGT00390000011239	ENSGT00390000004586	ENSGT01050000244841.A.b.b.a	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00390000011863.d ##21	ENSGT00550000074907	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Argentine black and white tegu	MODERN SPECIES	15	PRKAR2B (ENSSMRG00000015607)	HBP1 (ENSSMRG00000015611)	COG5 (ENSSMRG00000015615)	GPR22 (ENSSMRG00000015618)	SLC26A4 (ENSSMRG00000015619)	BCAP29 (ENSSMRG00000015622) ##21	DUS4L (ENSSMRG00000015623)	ENSSMRG00000015625	SLC26A3 (ENSSMRG00000015627)	DLD (ENSSMRG00000015641)	LAMB1 (ENSSMRG00000015643)	LAMB4 (ENSSMRG00000000026)	ERGIC2 (ENSSMRG00000000156)	LRRK2 (ENSSMRG00000000266)	SLC2A13 (ENSSMRG00000000361)	ABCD2 (ENSSMRG00000000368) ##22	KIF21A (ENSSMRG00000000444)	CPNE8 (ENSSMRG00000010421)	ENSSMRG00000010452	TPRKB (ENSSMRG00000010455)	GTSE1 (ENSSMRG00000010456)	TRMU (ENSSMRG00000010460)	CELSR1 (ENSSMRG00000010521)	GRAMD4 (ENSSMRG00000010524)	CERK (ENSSMRG00000010528)	TBC1D22A (ENSSMRG00000010542)	TAFA5 (ENSSMRG00000010589)	ENSSMRG00000010665	BRD1 (ENSSMRG00000010721)	ZBED4 (ENSSMRG00000010724)	ALG12 (ENSSMRG00000010726)
Common wall lizard	MODERN SPECIES	1	COG5 (ENSPMRG00000011531)	ENSPMRG00000011537	GPR22 (ENSPMRG00000011542)	ENSPMRG00000011546	SLC26A4 (ENSPMRG00000011568)	BCAP29 (ENSPMRG00000011648) ##21	DUS4L (ENSPMRG00000011655)	ENSPMRG00000011662	SLC26A3 (ENSPMRG00000011676)	DLD (ENSPMRG00000011703)	LAMB1 (ENSPMRG00000011723)	LAMB4 (ENSPMRG00000011841)	ERGIC2 (ENSPMRG00000012485)	LRRK2 (ENSPMRG00000012548)	SLC2A13 (ENSPMRG00000012854)	ABCD2 (ENSPMRG00000012866) ##22	KIF21A (ENSPMRG00000012882)	CPNE8 (ENSPMRG00000012941)	ENSPMRG00000012972	TPRKB (ENSPMRG00000012975)	GTSE1 (ENSPMRG00000012982)	TRMU (ENSPMRG00000012994)	CELSR1 (ENSPMRG00000013008)	GRAMD4 (ENSPMRG00000013060)	CERK (ENSPMRG00000013163)	TBC1D22A (ENSPMRG00000013181)	ENSPMRG00000013215	ENSPMRG00000013218	ENSPMRG00000013220	ENSPMRG00000013232	TAFA5 (ENSPMRG00000013237)
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00940000158160	ENSGT00390000011239	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00390000011863.d ##21	ENSGT00550000074907	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071	ENSGT00940000153394.c.b
Lizard	MODERN SPECIES	4	cbll1 (ENSACAG00000039398)	SLC26A3 (ENSACAG00000015236)	ENSACAG00000015303	ENSACAG00000041822	DLD (ENSACAG00000015309)	LAMB1 (ENSACAG00000004184)	LAMB4 (ENSACAG00000004580)	ENSACAG00000041182	ENSACAG00000008262	ENSACAG00000008239	ENSACAG00000038858	LRRK2 (ENSACAG00000008207)	ENSACAG00000036674	SLC2A13 (ENSACAG00000008170)	ENSACAG00000037840	ABCD2 (ENSACAG00000008119) ##22	KIF21A (ENSACAG00000007925)	ENSACAG00000039733	ENSACAG00000007881	CPNE8 (ENSACAG00000007800)	alg10 (ENSACAG00000043495)	TPRKB (ENSACAG00000043507)	ENSACAG00000007720	ENSACAG00000007375	ENSACAG00000036958	ENSACAG00000007317	LIAS (ENSACAG00000007260)	ENSACAG00000007185	ENSACAG00000038904	SMIM14 (ENSACAG00000042151)	UBE2K (ENSACAG00000011290)
Elapidae	ANCESTRAL SPECIES	6	ENSGT00940000158160	ENSGT00390000011239	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00390000011863.d ##21	ENSGT00550000074907	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A.g	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000156909	ENSGT00390000001969.b	ENSGT00390000007283	ENSGT00390000011648.a	ENSGT00940000155057	ENSGT00940000153567.b.a.b	ENSGT00940000161422	ENSGT00940000153372.A.f.o.a	ENSGT00940000153372.A.f.o.b	ENSGT00940000159379	ENSGT00940000156019.g	ENSGT00940000155209.w	ENSGT00940000153962.b	ENSGT01050000244951.a.a	ENSGT00940000169031
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	10	GPR22 (ENSNNAG00000017534)	COG5 (ENSNNAG00000017520)	SLC26A4 (ENSNNAG00000017508)	ENSNNAG00000017500	BCAP29 (ENSNNAG00000017490) ##21	ENSNNAG00000017485	ENSNNAG00000017472	SLC26A3 (ENSNNAG00000017452)	DLD (ENSNNAG00000017436)	LAMB1 (ENSNNAG00000017407)	LAMB4 (ENSNNAG00000017378)	ERGIC2 (ENSNNAG00000017357)	LRRK2 (ENSNNAG00000017306)	SLC2A13 (ENSNNAG00000017274)	ENSNNAG00000017238 ##22	ENSNNAG00000017224 ##22	PTPN12 (ENSNNAG00000017083)	RSBN1L (ENSNNAG00000017009)	TMEM60 (ENSNNAG00000016992)	MAGI2 (ENSNNAG00000015835)	GNAI1 (ENSNNAG00000015735)	GNAT3 (ENSNNAG00000015712)	ENSNNAG00000015687	ENSNNAG00000015483	SEMA3C (ENSNNAG00000015432)	HGF (ENSNNAG00000015231)	CACNA2D1 (ENSNNAG00000015141)	CYB5R3 (ENSNNAG00000015118)	PPFIBP1 (ENSNNAG00000014912)	ENSNNAG00000014891	BMAL2 (ENSNNAG00000014829)
Indian cobra	MODERN SPECIES	10	HBP1 (ENSNNAG00000017539)	GPR22 (ENSNNAG00000017534)	COG5 (ENSNNAG00000017520)	SLC26A4 (ENSNNAG00000017508)	ENSNNAG00000017500	BCAP29 (ENSNNAG00000017490) ##21	ENSNNAG00000017485	ENSNNAG00000017472	SLC26A3 (ENSNNAG00000017452)	DLD (ENSNNAG00000017436)	LAMB1 (ENSNNAG00000017407)	LAMB4 (ENSNNAG00000017378)	ERGIC2 (ENSNNAG00000017357)	LRRK2 (ENSNNAG00000017306)	SLC2A13 (ENSNNAG00000017274)	ENSNNAG00000017238 ##22	ENSNNAG00000017224 ##22	PTPN12 (ENSNNAG00000017083)	RSBN1L (ENSNNAG00000017009)	TMEM60 (ENSNNAG00000016992)	MAGI2 (ENSNNAG00000015835)	GNAI1 (ENSNNAG00000015735)	GNAT3 (ENSNNAG00000015712)	ENSNNAG00000015687	ENSNNAG00000015483	SEMA3C (ENSNNAG00000015432)	HGF (ENSNNAG00000015231)	CACNA2D1 (ENSNNAG00000015141)	CYB5R3 (ENSNNAG00000015118)	PPFIBP1 (ENSNNAG00000014912)	ENSNNAG00000014891
Elapidae_a	ANCESTRAL SPECIES	1	ENSGT00940000158160	ENSGT00390000011239	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00390000011863.d ##21	ENSGT00550000074907	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A.g	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000156909	ENSGT00390000001969.b	ENSGT00390000007283	ENSGT00390000011648.a	ENSGT00940000155057	ENSGT00940000153567.b.a.b	ENSGT00940000161422	ENSGT00940000153372.A.f.o.a	ENSGT00940000153372.A.f.o.b	ENSGT00940000159379	ENSGT00940000156019.g	ENSGT00940000155209.w	ENSGT00940000153962.b	ENSGT01050000244951.a.a	ENSGT00940000160423
Blue-lipped sea krait	MODERN SPECIES	2428																ABCD2 (ENSLLTG00000005440) ##22
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00940000158160	ENSGT00390000011239	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00390000011863.d ##21	ENSGT00550000074907	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00530000063113.A.g	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000156909	ENSGT00390000001969.b	ENSGT00390000007283	ENSGT00390000011648.a	ENSGT00940000155057	ENSGT00940000153567.b.a.b	ENSGT00940000161422	ENSGT00940000153372.A.f.o.a	ENSGT00940000153372.A.f.o.b	ENSGT00940000159379	ENSGT00940000156019.g	ENSGT00940000155209.w	ENSGT00940000153962.b	ENSGT01050000244951.a.a	ENSGT00940000160423
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	89	PRKAR2B (ENSNSUG00000019777)	HBP1 (ENSNSUG00000019775)	GPR22 (ENSNSUG00000019774)	COG5 (ENSNSUG00000019761)	SLC26A4 (ENSNSUG00000019759)	BCAP29 (ENSNSUG00000019758) ##21	ENSNSUG00000019757	ENSNSUG00000019756	SLC26A3 (ENSNSUG00000019755)	DLD (ENSNSUG00000019754)	LAMB1 (ENSNSUG00000019658)	LAMB4 (ENSNSUG00000019657)	ERGIC2 (ENSNSUG00000019656)	LRRK2 (ENSNSUG00000019655)	SLC2A13 (ENSNSUG00000019654)	ENSNSUG00000019653 ##22	ENSNSUG00000019652 ##22	PTPN12 (ENSNSUG00000019651)	RSBN1L (ENSNSUG00000019650)	TMEM60 (ENSNSUG00000019649)	PHTF2 (ENSNSUG00000019648)	MAGI2 (ENSNSUG00000019635)	GNAI1 (ENSNSUG00000019634)	ENSNSUG00000019632	ENSNSUG00000019631	SEMA3C (ENSNSUG00000019630)
Mainland tiger snake	MODERN SPECIES	89	HBP1 (ENSNSUG00000019775)	GPR22 (ENSNSUG00000019774)	COG5 (ENSNSUG00000019761)	SLC26A4 (ENSNSUG00000019759)	BCAP29 (ENSNSUG00000019758) ##21	ENSNSUG00000019757	ENSNSUG00000019756	SLC26A3 (ENSNSUG00000019755)	DLD (ENSNSUG00000019754)	LAMB1 (ENSNSUG00000019658)	LAMB4 (ENSNSUG00000019657)	ERGIC2 (ENSNSUG00000019656)	LRRK2 (ENSNSUG00000019655)	SLC2A13 (ENSNSUG00000019654)	ENSNSUG00000019653 ##22	ENSNSUG00000019652 ##22	PTPN12 (ENSNSUG00000019651)	RSBN1L (ENSNSUG00000019650)	TMEM60 (ENSNSUG00000019649)	PHTF2 (ENSNSUG00000019648)	MAGI2 (ENSNSUG00000019635)	GNAI1 (ENSNSUG00000019634)	ENSNSUG00000019632	ENSNSUG00000019631	SEMA3C (ENSNSUG00000019630)
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES		HBP1 (ENSPTXG00000011738)	GPR22 (ENSPTXG00000011737)	COG5 (ENSPTXG00000011736)	SLC26A4 (ENSPTXG00000011735)	BCAP29 (ENSPTXG00000011734) ##21	DUS4L (ENSPTXG00000011732)	ENSPTXG00000011731	SLC26A3 (ENSPTXG00000011729)	DLD (ENSPTXG00000011726)	LAMB1 (ENSPTXG00000009776)	LAMB4 (ENSPTXG00000009775)	ERGIC2 (ENSPTXG00000009774)	LRRK2 (ENSPTXG00000009769)	SLC2A13 (ENSPTXG00000009768)	ENSPTXG00000009766 ##22	ENSPTXG00000009765 ##22	PTPN12 (ENSPTXG00000009764)	RSBN1L (ENSPTXG00000009742)	TMEM60 (ENSPTXG00000009739)	PHTF2 (ENSPTXG00000009736)	MAGI2 (ENSPTXG00000007577)	ENSPTXG00000007572	GNAI1 (ENSPTXG00000007570)	GNAT3 (ENSPTXG00000007569)	ENSPTXG00000007568	ENSPTXG00000007567	ENSPTXG00000007556	SEMA3C (ENSPTXG00000007552)	HGF (ENSPTXG00000007546)	CACNA2D1 (ENSPTXG00000005051)	CYB5R3 (ENSPTXG00000005034)
Eastern brown snake	MODERN SPECIES		PRKAR2B (ENSPTXG00000011739)	HBP1 (ENSPTXG00000011738)	GPR22 (ENSPTXG00000011737)	COG5 (ENSPTXG00000011736)	SLC26A4 (ENSPTXG00000011735)	BCAP29 (ENSPTXG00000011734) ##21	DUS4L (ENSPTXG00000011732)	ENSPTXG00000011731	SLC26A3 (ENSPTXG00000011729)	DLD (ENSPTXG00000011726)	LAMB1 (ENSPTXG00000009776)	LAMB4 (ENSPTXG00000009775)	ERGIC2 (ENSPTXG00000009774)	LRRK2 (ENSPTXG00000009769)	SLC2A13 (ENSPTXG00000009768)	ENSPTXG00000009766 ##22	ENSPTXG00000009765 ##22	PTPN12 (ENSPTXG00000009764)	RSBN1L (ENSPTXG00000009742)	TMEM60 (ENSPTXG00000009739)	PHTF2 (ENSPTXG00000009736)	MAGI2 (ENSPTXG00000007577)	ENSPTXG00000007572	GNAI1 (ENSPTXG00000007570)	GNAT3 (ENSPTXG00000007569)	ENSPTXG00000007568	ENSPTXG00000007567	ENSPTXG00000007556	SEMA3C (ENSPTXG00000007552)	HGF (ENSPTXG00000007546)	CACNA2D1 (ENSPTXG00000005051)
Anura	ANCESTRAL SPECIES	5	ENSGT01050000244841.A.b.b.a	ENSGT00390000004586	ENSGT00550000074907	ENSGT00390000011863.d ##21	ENSGT01070000253775.a.d.a.a.a.a.i	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b.b	ENSGT01070000253775.a.d.a.a.a.b.a.a	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT01010000230181	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000030690	ENSLLEG00000030728	DLD (ENSLLEG00000004529)	LAMB1 (ENSLLEG00000004561)	LAMB4 (ENSLLEG00000004592)	ENSLLEG00000004635	ENSLLEG00000004639	ENSLLEG00000004642	ENSLLEG00000004649	ENSLLEG00000004656	ENSLLEG00000004666	LRRK2 (ENSLLEG00000004699)	SLC2A13 (ENSLLEG00000004739)	ENSLLEG00000004746	ENSLLEG00000004753	ABCD2 (ENSLLEG00000004776) ##22	ENSLLEG00000004810	ENSLLEG00000004822	ENSLLEG00000004830	CPNE8 (ENSLLEG00000004860)	ENSLLEG00000004956	TPRKB (ENSLLEG00000004963)	ENSLLEG00000004988	SLU7 (ENSLLEG00000005031)	ENSLLEG00000005174	ENSLLEG00000005197	ENSLLEG00000005238	SLC35A4 (ENSLLEG00000005255)	ENSLLEG00000005277	SRA1 (ENSLLEG00000005438)	C1QTNF2 (ENSLLEG00000005616)
Frog	MODERN SPECIES	3	slc26a4.1 (ENSXETG00000012196)	cbll1 (ENSXETG00000012262)	ENSXETG00000049474	slc26a3.3 (ENSXETG00000012233)	ENSXETG00000034012	slc26a3.2 (ENSXETG00000025660)	dld (ENSXETG00000012269)	lamb1 (ENSXETG00000012279)	lamb4 (ENSXETG00000033209)	ENSXETG00000047122	spam1 (ENSXETG00000033261)	ENSXETG00000045508	lrrk2 (ENSXETG00000015544)	slc2a13 (ENSXETG00000015550)	c12orf40 (ENSXETG00000031986)	abcd2 (ENSXETG00000036446) ##22	kif21a (ENSXETG00000015558)	cpne8 (ENSXETG00000031332)	alg10 (ENSXETG00000038930)	tprkb (ENSXETG00000023300)	gtse1 (ENSXETG00000023301)	trmu (ENSXETG00000023304)	celsr1 (ENSXETG00000023306)	gramd4 (ENSXETG00000023313)	cerk (ENSXETG00000023320)	tbc1d22a (ENSXETG00000023322)	ENSXETG00000047333	tafa5 (ENSXETG00000039945)	ENSXETG00000044676	brd1 (ENSXETG00000014519)	ENSXETG00000046266
Coelacanth	MODERN SPECIES	969												ENSLACG00000013707	LRRK2 (ENSLACG00000011925)	SLC2A13 (ENSLACG00000008397)	ENSLACG00000022139	ABCD2 (ENSLACG00000005052) ##22
Actinopterygii	ANCESTRAL SPECIES	1	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a	ENSGT01030000234563.a.a.c.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00390000011863.d ##21	ENSGT00940000155529.C	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000179161	ENSGT00940000164528	ENSGT00940000165245	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00940000165678	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840.h	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B
Neopterygii	ANCESTRAL SPECIES	29												ENSGT00940000164528	ENSGT00940000165245	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00940000165678	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840.h	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B
Osteoglossocephalai	ANCESTRAL SPECIES	206												ENSGT00940000164528	ENSGT00940000165245	ENSGT00940000158267	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000154189.B	ENSGT00940000165678	ENSGT00390000014323	ENSGT00960000192198	ENSGT00940000159839	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236	ENSGT00940000161365
Clupeocephala	ANCESTRAL SPECIES	100	ENSGT00940000155197	ENSGT00940000153525.j	ENSGT00540000073481	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00390000014507.a.b	ENSGT00940000157013	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.b.b	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Otomorpha	ANCESTRAL SPECIES	81	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.b	ENSGT00940000155118	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.b.b	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.j	ENSGT00940000153394.c.b.b.c.a.b	ENSGT00940000168446	ENSGT00940000157236.i
Clupeiformes	ANCESTRAL SPECIES	48	ENSGT00940000155197	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.b	ENSGT00940000155118	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.b.b	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b
Denticle herring	MODERN SPECIES	6	bcat1 (ENSDCDG00000031716)	lrmp (ENSDCDG00000031732)	dnai7 (ENSDCDG00000031761)	lyrm5a (ENSDCDG00000031764)	arl1 (ENSDCDG00000031854)	pyroxd1 (ENSDCDG00000031861)	ENSDCDG00000031867	slco1f3 (ENSDCDG00000031878)	ENSDCDG00000031901	slco1d1 (ENSDCDG00000032084)	ENSDCDG00000032426	ENSDCDG00000032440	ENSDCDG00000032681	SLC2A13 (ENSDCDG00000032780)	ENSDCDG00000032796	ABCD2 (ENSDCDG00000032802) ##22	ENSDCDG00000032917	CPNE8 (ENSDCDG00000034281)	alg10 (ENSDCDG00000034349)	tprkb (ENSDCDG00000034356)	ENSDCDG00000034365	trmu (ENSDCDG00000034375)	CELSR1 (ENSDCDG00000034431)	adipor2 (ENSDCDG00000034831)	wnt5b (ENSDCDG00000034837)	FBXL14 (ENSDCDG00000034839)	ENSDCDG00000034840	ERC1 (ENSDCDG00000034847)	ninj2 (ENSDCDG00000034870)	WNK1 (ENSDCDG00000034883)	PRR5 (ENSDCDG00000034920)
Atlantic herring	MODERN SPECIES	7	ENSCHAG00000017825	ENSCHAG00000017835	SLC5A8 (ENSCHAG00000017861)	ENSCHAG00000017882	UTP20 (ENSCHAG00000017904)	arl1 (ENSCHAG00000018021)	pyroxd1 (ENSCHAG00000018076)	ENSCHAG00000018172	slco1f3 (ENSCHAG00000018186)	ENSCHAG00000018462	slco1d1 (ENSCHAG00000018529)	ENSCHAG00000019081	SLC2A13 (ENSCHAG00000019444)	ENSCHAG00000019537	slco1d1 (ENSCHAG00000019966)	ABCD2 (ENSCHAG00000020077) ##22	ENSCHAG00000020445	ENSCHAG00000024061	alg10 (ENSCHAG00000024589)	tprkb (ENSCHAG00000024595)	ENSCHAG00000024604	ENSCHAG00000024616	SYN3 (ENSCHAG00000024634)	TIMP3 (ENSCHAG00000024750)	lyrm5a (ENSCHAG00000024760)	dnai7 (ENSCHAG00000024762)	lrmp (ENSCHAG00000024767)	bcat1 (ENSCHAG00000024785)	sox5 (ENSCHAG00000024830)	ENSCHAG00000025547	ETNK1 (ENSCHAG00000025552)
Otophysi	DUPLICATION
Otophysi	ANCESTRAL SPECIES	40	ENSGT00940000155908.a	ENSGT00940000165002	ENSGT00940000161075	ENSGT00940000156857.b	ENSGT00940000156857.a	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.b.b	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000164528	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b.n ##22	ENSGT00940000171055	ENSGT00950000182955.a.b.b.m ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00940000160682.b.c.a	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071	ENSGT00940000153394.c.b.b.c.b	ENSGT00940000162605.e	ENSGT00940000165017.b
Characiphysae	ANCESTRAL SPECIES	67	ENSGT01050000244857.A.b	ENSGT00940000155908.a	ENSGT00940000165002	ENSGT00940000161075	ENSGT00940000156857.b	ENSGT00940000156857.a	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.b.b	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000164528	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b.m ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.g.a
Channel catfish	MODERN SPECIES	10	cpm (ENSIPUG00000008814)	ENSIPUG00000008847	iqsec3 (ENSIPUG00000008883)	ENSIPUG00000008971	Slc6a13 (ENSIPUG00000009005)	PARP11 (ENSIPUG00000009053)	ENSIPUG00000009081	pyroxd1 (ENSIPUG00000009092)	IAPP (ENSIPUG00000009146)	ENSIPUG00000009155	ENSIPUG00000009187	slco1d1 (ENSIPUG00000009210)	ENSIPUG00000009278	SLC2A13 (ENSIPUG00000009498)	ENSIPUG00000009535	abcd2 (ENSIPUG00000009556) ##22	ENSIPUG00000009595	ENSIPUG00000009624	CPNE8 (ENSIPUG00000009664)	alg10 (ENSIPUG00000009751)	Tprkb (ENSIPUG00000009763)	ENSIPUG00000009777	trmu (ENSIPUG00000009785)	celsr1 (ENSIPUG00000009838)	GRAMD4 (ENSIPUG00000010022)	cerk (ENSIPUG00000010155)	tbc1d22a (ENSIPUG00000010225)	fam19a5 (ENSIPUG00000010346)	BRPF3 (ENSIPUG00000010366)	ZBED4 (ENSIPUG00000010442)	alg12 (ENSIPUG00000010451)
Characiphysae_b	ANCESTRAL SPECIES	58	ENSGT01030000234588.b.b.a.b	ENSGT01050000244857.A.b	ENSGT00940000155908.a	ENSGT00940000165002	ENSGT00940000161075	ENSGT00940000156857.b	ENSGT00940000156857.a	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.b.b	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000164528	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b.m ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.a	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Characoidei	ANCESTRAL SPECIES	52	ENSGT01030000234588.b.b.a.b	ENSGT01050000244857.A.b	ENSGT00940000155908.a	ENSGT00940000165002	ENSGT00940000161075	ENSGT00940000156857.b	ENSGT00940000156857.a	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.b.b	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000164528	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b.m ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071	ENSGT00940000153394.c.b.b.c.b
Red-bellied piranha	MODERN SPECIES	47	st8sia1 (ENSPNAG00000029903)	tnni1d (ENSPNAG00000029894)	ENSPNAG00000029887	ENSPNAG00000029866	ENSPNAG00000029845	ENSPNAG00000029836	PARP11 (ENSPNAG00000029821)	ENSPNAG00000029814	pyroxd1 (ENSPNAG00000029801)	IAPP (ENSPNAG00000029787)	slco1f3 (ENSPNAG00000029779)	ENSPNAG00000029754	slco1d1 (ENSPNAG00000029741)	ENSPNAG00000029709	SLC2A13 (ENSPNAG00000029684)	ABCD2 (ENSPNAG00000006889) ##22	ENSPNAG00000029611	CPNE8 (ENSPNAG00000029478)	alg10 (ENSPNAG00000029411)	tprkb (ENSPNAG00000029402)	ENSPNAG00000029391	trmu (ENSPNAG00000006339)	CELSR1 (ENSPNAG00000029282)	GRAMD4 (ENSPNAG00000028903)	cerk (ENSPNAG00000028713)	tbc1d22a (ENSPNAG00000028701)	ENSPNAG00000005621	tafa5a (ENSPNAG00000028587)	ENSPNAG00000028570	chrm2a (ENSPNAG00000028555)	ptn (ENSPNAG00000028545)
Mexicana tetra	MODERN SPECIES	22	ENSAMXG00000005651	ENSAMXG00000005624	ENSAMXG00000038197	PARP11 (ENSAMXG00000039975)	ENSAMXG00000005564	pyroxd1 (ENSAMXG00000034660)	ENSAMXG00000034981	slco1f3 (ENSAMXG00000005507)	ENSAMXG00000031088	slco1d1 (ENSAMXG00000042857)	ENSAMXG00000037684	ENSAMXG00000005463	ENSAMXG00000038121	SLC2A13 (ENSAMXG00000005452)	ENSAMXG00000031724	ABCD2 (ENSAMXG00000005445) ##22	ENSAMXG00000005434	CPNE8 (ENSAMXG00000005369)	alg10 (ENSAMXG00000034733)	tprkb (ENSAMXG00000032683)	ENSAMXG00000043056	trmu (ENSAMXG00000005282)	CELSR1 (ENSAMXG00000005267)	GRAMD4 (ENSAMXG00000005254)	BRD1 (ENSAMXG00000017417)	zbed4 (ENSAMXG00000025839)	alg12 (ENSAMXG00000030894)	creld2 (ENSAMXG00000017333)	PIM3 (ENSAMXG00000037040)	ENSAMXG00000042923	ENSAMXG00000017254
Electric eel	MODERN SPECIES	224					SLC6A12 (ENSEEEG00000015100)	PARP11 (ENSEEEG00000015103)	ENSEEEG00000015105	pyroxd1 (ENSEEEG00000015108)	ENSEEEG00000015127	slco1f3 (ENSEEEG00000015128)	ENSEEEG00000015209	slco1d1 (ENSEEEG00000015353)	ENSEEEG00000015380	ENSEEEG00000015382	SLC2A13 (ENSEEEG00000015391)	ABCD2 (ENSEEEG00000015393) ##22	ENSEEEG00000015395	CPNE8 (ENSEEEG00000015399)	alg10 (ENSEEEG00000015404)	tprkb (ENSEEEG00000015406)	ENSEEEG00000015407	trmu (ENSEEEG00000015408)	CELSR1 (ENSEEEG00000015413)	GRAMD4 (ENSEEEG00000015414)	cerk (ENSEEEG00000015416)	tbc1d22a (ENSEEEG00000015420)
Cyprinoidei	ANCESTRAL SPECIES	67	ENSGT01030000234588.b.b.a.b	ENSGT01050000244857.A.b	ENSGT00940000155908.a	ENSGT00940000165002	ENSGT00940000161075	ENSGT00940000156857.b	ENSGT00940000156857.a	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.b.b	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000164528	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b.m ##22	ENSGT00940000155323.b	ENSGT00940000159679.d	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b.c.a	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	302	ENSGT00940000164581.A.a.a.c.a	ENSGT01030000234535.D.n	ENSGT01030000234588.b.b.a.b.b	ENSGT01050000244857.A.b.c.a	ENSGT00940000155908.a.a	ENSGT00940000165002.i	ENSGT00940000161075.c	ENSGT00390000014894.d	ENSGT00510000048671.g	ENSGT01080000257336.b.e.b.b.b	ENSGT01080000257336.b.e.a.a.b	ENSGT01080000257336.b.e.a.b.a.a	ENSGT00940000164528	ENSGT01080000257336.b.e.a.b.b	ENSGT00940000155870.a.a.d	ENSGT00950000182955.a.b.b.m.a ##22	ENSGT00940000155323.b.h	ENSGT00940000159679.d.b	ENSGT00390000012906.a	ENSGT00390000012942.a	ENSGT00390000014323.a	ENSGT00940000159839.d.a.b.a	ENSGT00390000010968.b.b	ENSGT00940000156976.fb.b	ENSGT00940000159840.h.b	ENSGT00940000160682.b.c.b.c.a	ENSGT00940000157236.i.e	ENSGT00940000161365.f
Goldfish	MODERN SPECIES	21	ENSCARG00000028759	ENSCARG00000028747	ENSCARG00000028739	ENSCARG00000028732	ENSCARG00000028728	ENSCARG00000028724	ENSCARG00000028719	ENSCARG00000028694	ENSCARG00000028689	IAPP (ENSCARG00000028683)	ENSCARG00000028560	ENSCARG00000028541	ENSCARG00000028536 ##9	slco1d1 (ENSCARG00000026476)	SLC2A13 (ENSCARG00000026313)	ABCD2 (ENSCARG00000026066) ##22	ENSCARG00000018751	ENSCARG00000018516	dcn (ENSCARG00000018507)	lum (ENSCARG00000018500)	ENSCARG00000018493	ENSCARG00000018489	ALOX5 (ENSCARG00000018273)	ENSCARG00000018244	ENSCARG00000018239	ENSCARG00000022440	ENSCARG00000022438	ENSCARG00000022431	ENSCARG00000022407	ENSCARG00000022397	muc13b (ENSCARG00000022387)
Cyprininae_a	ANCESTRAL SPECIES	260	ENSGT01030000234535.D.n	ENSGT01030000234588.b.b.a.b.b	ENSGT01050000244857.A.b.c.a	ENSGT00940000155908.a.a	ENSGT00940000165002.i	ENSGT00940000161075.c	ENSGT00390000014894.d	ENSGT00510000048671.g	ENSGT01080000257336.b.e.b.b.b	ENSGT01080000257336.b.e.a.a.b	ENSGT01080000257336.b.e.a.b.a.a	ENSGT00940000164528	ENSGT01080000257336.b.e.a.b.b.a	ENSGT00940000165245	ENSGT00940000155870.a.a.d	ENSGT00950000182955.a.b.b.m.a ##22	ENSGT00940000155323.b.h	ENSGT00940000159679.d.b	ENSGT00390000012906.a	ENSGT00390000012942.a	ENSGT00390000014323.a	ENSGT00940000159839.d.a.b.a	ENSGT00390000010968.b.b	ENSGT00940000156976.fb.b	ENSGT00940000159840.h.b	ENSGT00940000160682.b.c.b.c.a	ENSGT00940000157236.i.e	ENSGT00940000161365.f	ENSGT00950000183090.B.d
Common carp reference	MODERN SPECIES	36	ENSCCRG00000044659	st8sia1 (ENSCCRG00000031007)	tnni1d (ENSCCRG00000031001)	ENSCCRG00000066822	ENSCCRG00000078016	ENSCCRG00000022366	ENSCCRG00000022406	ENSCCRG00000022413	ENSCCRG00000052043	ENSCCRG00000016349	slco1d1 (ENSCCRG00000054921)	ENSCCRG00000055826	ENSCCRG00000054347	ENSCCRG00000033677	SLC2A13 (ENSCCRG00000063144)	ABCD2 (ENSCCRG00000021629) ##22	ENSCCRG00000047629	CPNE8 (ENSCCRG00000081577)	alg10 (ENSCCRG00000000336)	tprkb (ENSCCRG00000000141)	trmu (ENSCCRG00000000259)	ENSCCRG00000068298	GRAMD4 (ENSCCRG00000024842)	cerk (ENSCCRG00000075027)	tbc1d22a (ENSCCRG00000055044)	ENSCCRG00000078813	ENSCCRG00000066222	ENSCCRG00000059374	TAFA5 (ENSCCRG00000080425)	ENSCCRG00000061933	BRD1 (ENSCCRG00000004941)
Golden-line barbel	MODERN SPECIES	1101															SLC2A13 (ENSSGRG00000012977)	ABCD2 (ENSSGRG00000012969) ##22	ENSSGRG00000010430	CPNE8 (ENSSGRG00000010225)
Cyprininae	ANCESTRAL SPECIES	94	ENSGT01030000234535.D.m	ENSGT01030000234588.b.b.a.b.a	ENSGT01050000244857.A.b.c.b	ENSGT00940000155908.a.b	ENSGT00940000165002.j	ENSGT00940000161075.d	ENSGT00940000156857.b	ENSGT00940000156857.a	ENSGT00390000014894.c	ENSGT00510000048671.h	ENSGT01080000257336.b.e.b.b.a	ENSGT01080000257336.b.e.a.a.a	ENSGT01080000257336.b.e.a.b.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a.c	ENSGT00950000182955.a.b.b.m.b ##22	ENSGT00940000155323.b.g	ENSGT00940000159679.d.a	ENSGT00390000012906.b	ENSGT00390000012942.b	ENSGT00940000165678.b	ENSGT00390000014323.b	ENSGT00940000159839.d.a.b.b	ENSGT00390000010968.b.a	ENSGT00940000156976.fb.a	ENSGT00940000159840.h.a	ENSGT00940000160682.b.c.b.c.b	ENSGT00940000157236.i.f	ENSGT00940000161365.e	ENSGT00950000183090.B	ENSGT00940000160071
Goldfish	MODERN SPECIES	33	ENSCARG00000051073	ENSCARG00000051080	ENSCARG00000051152	ENSCARG00000052369	SLC6A12 (ENSCARG00000052572)	PARP11 (ENSCARG00000052587)	ENSCARG00000052595	pyroxd1 (ENSCARG00000052610)	IAPP (ENSCARG00000052730)	ENSCARG00000052755	ENSCARG00000053011	ENSCARG00000054506	slco1d1 (ENSCARG00000054541)	ENSCARG00000054892	SLC2A13 (ENSCARG00000055324)	ABCD2 (ENSCARG00000055614) ##22	ENSCARG00000055954	CPNE8 (ENSCARG00000063698)	ENSCARG00000063824	alg10 (ENSCARG00000063835)	tprkb (ENSCARG00000063845)	ENSCARG00000063878	gas8 (ENSCARG00000063890)	trmu (ENSCARG00000064304)	ENSCARG00000064434	GRAMD4 (ENSCARG00000065454)	cerk (ENSCARG00000065621)	tbc1d22a (ENSCARG00000065691)	parp12b (ENSCARG00000066081)	hsp90b1 (ENSCARG00000066093)	glt8d2 (ENSCARG00000066136)
Cyprininae_a	ANCESTRAL SPECIES	450															ENSGT00940000155870.a.a.c	ENSGT00950000182955.a.b.b.m.b ##22	ENSGT00940000155323.b.g	ENSGT00940000159679.d.a	ENSGT00390000012906.b	ENSGT00390000012942.b	ENSGT00940000165678.b	ENSGT00390000014323.b	ENSGT00940000159839.d.a.b.b	ENSGT00390000010968.b.a	ENSGT00940000156976.fb.a	ENSGT00940000159840.h.a	ENSGT00940000160682.b.c.b.c.b	ENSGT00940000157236.i.f	ENSGT00940000161365.e	ENSGT00950000183090.B.c	ENSGT00940000160071
Common carp reference	MODERN SPECIES	8	ENSCCRG00000078932	ENSCCRG00000037779	ENSCCRG00000074998	ENSCCRG00000000483	ENSCCRG00000035480	ENSCCRG00000064684	ENSCCRG00000035484	pyroxd1 (ENSCCRG00000026476)	ENSCCRG00000022237	ENSCCRG00000008350	ENSCCRG00000052050	slco1d1 (ENSCCRG00000014135)	slco1d1 (ENSCCRG00000014278)	ENSCCRG00000052070	SLC2A13 (ENSCCRG00000000166)	ABCD2 (ENSCCRG00000066876) ##22	ENSCCRG00000000505	CPNE8 (ENSCCRG00000056909)	alg10 (ENSCCRG00000072539)	tprkb (ENSCCRG00000080208)	ENSCCRG00000000159	ENSCCRG00000081939	trmu (ENSCCRG00000000189)	ENSCCRG00000060453	ENSCCRG00000072722	ENSCCRG00000069431	alg12 (ENSCCRG00000081938)	zbed4 (ENSCCRG00000082432)	BRD1 (ENSCCRG00000079415)	ENSCCRG00000076020	ENSCCRG00000066155
Golden-line barbel	MODERN SPECIES	1321															SLC2A13 (ENSSGRG00000027477)	ABCD2 (ENSSGRG00000027492) ##22	ENSSGRG00000027595	CPNE8 (ENSSGRG00000028436)	ENSSGRG00000028439	alg10 (ENSSGRG00000028440)	tprkb (ENSSGRG00000028442)	ENSSGRG00000028443	trmu (ENSSGRG00000028446)	ENSSGRG00000028588
Zebrafish	MODERN SPECIES	995																ABCD2 (ENSDARG00000099178) ##22
Otophysi	ANCESTRAL SPECIES	40	ENSGT01030000234588.b.b.a.b	ENSGT01050000244857.A.b	ENSGT00940000155908.a	ENSGT00940000165002	ENSGT00940000161075	ENSGT00940000156857.b	ENSGT00940000156857.a	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.b.b	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000164528	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b.n ##22	ENSGT00940000171055	ENSGT00950000182955.a.b.b.m ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00940000160682.b.c.a	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071	ENSGT00940000153394.c.b.b.c.b
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.b.n ##22
Zebrafish	MODERN SPECIES	19	ENSDARG00000105760	trim24 (ENSDARG00000103350)	PTPRR (ENSDARG00000105744)	ptprb (ENSDARG00000076624)	ENSDARG00000091499	ENSDARG00000105746	KCNA1 (ENSDARG00000017108)	PHF21B (ENSDARG00000109502)	nup50 (ENSDARG00000017454)	kiaa0930 (ENSDARG00000068830)	large1 (ENSDARG00000005126)	ENSDARG00000100624	ENSDARG00000112073	NAA40 (ENSDARG00000090570)	SLC2A13 (ENSDARG00000087867)	ABCD2 (ENSDARG00000059409) ##22	CPNE8 (ENSDARG00000102191)	ENSDARG00000103844	ENSDARG00000102468	si:dkey-71l4.4 (ENSDARG00000104916)	ENSDARG00000103197	ENSDARG00000098369	ENSDARG00000099112	ENSDARG00000090392	ENSDARG00000103314	ENSDARG00000104956	ENSDARG00000098218	ENSDARG00000101571	ENSDARG00000101551	ENSDARG00000104166	ENSDARG00000102432
Cyprininae	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b.b.n ##22
Goldfish	MODERN SPECIES	1857											FGD1 (ENSCARG00000054608)	tfe3a (ENSCARG00000054238)	zgc:113363 (ENSCARG00000054198)	cxxc1a (ENSCARG00000054070)	ENSCARG00000053994	ENSCARG00000053939 ##22	PLXNB3 (ENSCARG00000053158) #23	SRPK3 (ENSCARG00000053120) #24	ENSCARG00000053076	CDK16 (ENSCARG00000050894)	comta (ENSCARG00000050828)	abt1 (ENSCARG00000050817)	grm6a (ENSCARG00000050523)	USP11 (ENSCARG00000049254)	zgc:86609 (ENSCARG00000049008)	uxt (ENSCARG00000048972)	ENSCARG00000048957	ENSCARG00000048949	otud5a (ENSCARG00000047780)	pim2 (ENSCARG00000047698)	slc35a2 (ENSCARG00000047678)
Euteleosteomorpha	ANCESTRAL SPECIES	86	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00940000155197	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00390000014507.a.b	ENSGT00940000157013	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Protacanthopterygii	ANCESTRAL SPECIES	52	ENSGT00940000154098.a.f	ENSGT00390000008708.b	ENSGT00940000153525.i.a	ENSGT00940000178181	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00390000014507.a.b	ENSGT00940000157013	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.g.b	ENSGT00940000160682.b.d	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b.a.a	ENSGT00940000157236.i	ENSGT00940000161365
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1294															ENSGT00940000155870.a.a.e.b	ENSGT00950000182955.a.b.b.o ##22	ENSGT00940000155323.b.f
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT01030000235060.e.a	ENSGT00940000155197.a.b	ENSGT00940000154098.a.f.e	ENSGT00390000008708.b.b	ENSGT00940000153525.i.a.b	ENSGT00940000178181.b	ENSGT00390000018612.a.b.e	ENSGT00390000012501.e	ENSGT00390000014507.a.b.a	ENSGT00940000157013.h	ENSGT00390000014894.g	ENSGT00510000048671.a	ENSGT01080000257336.b.e.a.b.e	ENSGT00940000165245	ENSGT00940000155870.a.a.e.b	ENSGT00950000182955.a.b.b.o ##22	ENSGT00940000155323.b.f	ENSGT00940000159679.e.b	ENSGT00390000012906.c	ENSGT00390000012942.d	ENSGT00940000165678.b	ENSGT00390000014323.j.b	ENSGT00940000159839.d.a.a.a	ENSGT00390000010968.b.c	ENSGT00940000156976.fb.k	ENSGT00940000159840.g.b	ENSGT00940000160682.b.d	ENSGT00940000160682.b.c.b.a.a.b	ENSGT00940000157236.i.d	ENSGT00940000161365.h	ENSGT00950000183090.B.e
Salmo	ANCESTRAL SPECIES	46	ENSGT00530000064318.j.a	ENSGT01030000235060.e.a	ENSGT00940000155197.a.b	ENSGT00940000154098.a.f.e	ENSGT00390000008708.b.b	ENSGT00940000153525.i.a.b	ENSGT00940000178181.b	ENSGT00390000018612.a.b.e	ENSGT00390000012501.e	ENSGT00390000014507.a.b.a	ENSGT00940000157013.h	ENSGT00390000014894.g	ENSGT00510000048671.a	ENSGT00940000165245.`b	ENSGT00940000155870.a.a.e.b	ENSGT00950000182955.a.b.b.o ##22	ENSGT00940000155323.b.f	ENSGT00940000159679.e.b	ENSGT00390000012906.c	ENSGT00390000012942.d	ENSGT00940000165678.b	ENSGT00390000014323.j.b	ENSGT00940000159839.d.a.a.a	ENSGT00390000010968.b.c	ENSGT00940000156976.fb.k	ENSGT00940000159840.g.b	ENSGT00940000160682.b.d	ENSGT00940000160682.b.c.b.a.a.b	ENSGT00940000157236.i.d	ENSGT00940000161365.h	ENSGT00950000183090.B.e
River trout	MODERN SPECIES	34	tmpoa (ENSSTUG00000050069)	SLC25A3 (ENSSTUG00000050072)	LDHB (ENSSTUG00000050083)	ENSSTUG00000050091	gys2 (ENSSTUG00000050102)	spx (ENSSTUG00000050113)	golt1ba (ENSSTUG00000050115)	recql (ENSSTUG00000050127)	pyroxd1 (ENSSTUG00000050150)	IAPP (ENSSTUG00000050160)	ENSSTUG00000017604	ENSSTUG00000017949	slco1d1 (ENSSTUG00000017995)	ENSSTUG00000018987	SLC2A13 (ENSSTUG00000019547)	ABCD2 (ENSSTUG00000019608) ##22	ENSSTUG00000020469	CPNE8 (ENSSTUG00000027198)	alg10 (ENSSTUG00000027440)	tprkb (ENSSTUG00000027443)	ENSSTUG00000027450	trmu (ENSSTUG00000027465)	ENSSTUG00000027529	GRAMD4 (ENSSTUG00000028130)	cerk (ENSSTUG00000029080)	tbc1d22a (ENSSTUG00000029138)	ENSSTUG00000030403	tafa5a (ENSSTUG00000030407)	BRD1 (ENSSTUG00000030416)	alg12 (ENSSTUG00000030495)	creld2 (ENSSTUG00000030528)
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000070227	lap2 (ENSSSAG00000070216)	ENSSSAG00000070203	ldhb (ENSSSAG00000070190)	ENSSSAG00000070186	gys2 (ENSSSAG00000066364)	golt1ba (ENSSSAG00000083550)	RECQL (ENSSSAG00000069245)	PYROXD1 (ENSSSAG00000070151)	IAPP (ENSSSAG00000070176)	ENSSSAG00000104362	ENSSSAG00000058815	ENSSSAG00000058788	ENSSSAG00000083729	SLC2A13 (ENSSSAG00000068434)	ABCD2 (ENSSSAG00000068252) ##22	ENSSSAG00000067089	ENSSSAG00000117456	CPNE8 (ENSSSAG00000090399)	alg10 (ENSSSAG00000105289)	tprkb (ENSSSAG00000066951)	ENSSSAG00000066948	trmu (ENSSSAG00000066939)	ENSSSAG00000065271	GRAMD4 (ENSSSAG00000063778)	cerk (ENSSSAG00000063672)	tbc1d22a (ENSSSAG00000061198)	TAFA5 (ENSSSAG00000109872)	BRD1 (ENSSSAG00000059706)	zbed4 (ENSSSAG00000059656)	alg12 (ENSSSAG00000059614)
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT01030000235060.e.a	ENSGT00940000155197.a.b	ENSGT00940000154098.a.f.e	ENSGT00390000008708.b.b	ENSGT00940000153525.i.a.b	ENSGT00940000178181.b	ENSGT00390000018612.a.b.e	ENSGT00390000012501.e	ENSGT00390000014507.a.b.a	ENSGT00940000157013.h	ENSGT00390000014894.g	ENSGT00510000048671.a	ENSGT01080000257336.b.e.a.b.e	ENSGT00940000165245	ENSGT00940000155870.a.a.e.b	ENSGT00950000182955.a.b.b.o ##22	ENSGT00940000155323.b.f	ENSGT00940000159679.e.b	ENSGT00390000012906.c	ENSGT00390000012942.d	ENSGT00940000165678.b	ENSGT00390000014323.j.b	ENSGT00940000159839.d.a.a.a	ENSGT00390000010968.b.c	ENSGT00940000156976.fb.k	ENSGT00940000159840.g.b	ENSGT00940000160682.b.c.b.a.a.a	ENSGT00940000157236.i.d	ENSGT00940000161365.h	ENSGT00950000183090.B.e	ENSGT00940000160071.h
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000068676	ENSOMYG00000021492	LDHB (ENSOMYG00000021471)	ENSOMYG00000021456	gys2 (ENSOMYG00000021094)	SPX (ENSOMYG00000020984)	GOLT1B (ENSOMYG00000020964)	RECQL (ENSOMYG00000020807)	PYROXD1 (ENSOMYG00000020477)	IAPP (ENSOMYG00000037564)	ENSOMYG00000052158	ENSOMYG00000036802	ENSOMYG00000035118	SLC2A13 (ENSOMYG00000034881)	ENSOMYG00000072180	ABCD2 (ENSOMYG00000034736) ##22	ENSOMYG00000030984	CPNE8 (ENSOMYG00000029966)	alg10 (ENSOMYG00000029813)	tprkb (ENSOMYG00000029801)	ENSOMYG00000029784	trmu (ENSOMYG00000029725)	ENSOMYG00000076909	ENSOMYG00000029453	GRAMD4 (ENSOMYG00000028711)	cerk (ENSOMYG00000028390)	tbc1d22a (ENSOMYG00000027796)	tafa5a (ENSOMYG00000076175)	BRD1 (ENSOMYG00000027432)	zbed4 (ENSOMYG00000027338)	alg12 (ENSOMYG00000027317)
Oncorhynchus_a	ANCESTRAL SPECIES	31	ENSGT01030000235060.e.a	ENSGT00940000155197.a.b	ENSGT00940000154098.a.f.e	ENSGT00390000008708.b.b	ENSGT00940000153525.i.a.b	ENSGT00940000178181.b	ENSGT00390000018612.a.b.e	ENSGT00390000012501.f.a.a	ENSGT00390000014507.a.b.a	ENSGT00940000157013.h	ENSGT00390000014894.g	ENSGT00510000048671.a	ENSGT01080000257336.b.e.a.b.e	ENSGT00940000165245	ENSGT00940000155870.a.a.e.b	ENSGT00950000182955.a.b.b.o ##22	ENSGT00940000155323.b.f	ENSGT00940000159679.e.b	ENSGT00390000012906.c	ENSGT00390000012942.d	ENSGT00940000165678.b	ENSGT00390000014323.j.b	ENSGT00940000159839.d.a.a.a	ENSGT00390000010968.b.c	ENSGT00940000156976.fb.k	ENSGT00940000159840.g.b	ENSGT00940000160682.b.c.b.a.b.b	ENSGT00940000157236.i.d	ENSGT00940000161365.h	ENSGT00950000183090.B.e	ENSGT00940000160071.h
Coho salmon	MODERN SPECIES	10	strap (ENSOKIG00005012573)	tmpoa (ENSOKIG00005012700)	SLC25A3 (ENSOKIG00005012728)	LDHB (ENSOKIG00005012775)	ENSOKIG00005012784	gys2 (ENSOKIG00005012807)	spx (ENSOKIG00005012878)	GOLT1B (ENSOKIG00005012925)	recql (ENSOKIG00005012959)	pyroxd1 (ENSOKIG00005013238)	IAPP (ENSOKIG00005013263)	ENSOKIG00005013267	slco1d1 (ENSOKIG00005013300)	ENSOKIG00005014056	SLC2A13 (ENSOKIG00005014225)	ABCD2 (ENSOKIG00005014356) ##22	ENSOKIG00005014617	CPNE8 (ENSOKIG00005017557)	alg10 (ENSOKIG00005017702)	tprkb (ENSOKIG00005017710)	ENSOKIG00005017717	trmu (ENSOKIG00005017733)	CELSR1 (ENSOKIG00005017833)	GRAMD4 (ENSOKIG00005019340)	cerk (ENSOKIG00005020201)	tbc1d22a (ENSOKIG00005020225)	tafa5a (ENSOKIG00005020349)	ENSOKIG00005020357	BRD1 (ENSOKIG00005020380)	zbed4 (ENSOKIG00005020450)	alg12 (ENSOKIG00005020460)
Chinook salmon	MODERN SPECIES	8	ENSOTSG00005043764	strap (ENSOTSG00005043731)	tmpoa (ENSOTSG00005043730)	SLC25A3 (ENSOTSG00005043725)	LDHB (ENSOTSG00005043723)	ENSOTSG00005043722	gys2 (ENSOTSG00005043721)	spx (ENSOTSG00005043686)	golt1ba (ENSOTSG00005043685)	recql (ENSOTSG00005043231)	pyroxd1 (ENSOTSG00005043228)	IAPP (ENSOTSG00005043227)	slco1d1 (ENSOTSG00005042992)	ENSOTSG00005042964	SLC2A13 (ENSOTSG00005042951)	ABCD2 (ENSOTSG00005042835) ##22	ENSOTSG00005042603	ENSOTSG00005042532	alg10 (ENSOTSG00005042525)	tprkb (ENSOTSG00005042524)	ENSOTSG00005042523	trmu (ENSOTSG00005042463)	CELSR1 (ENSOTSG00005042318)	GRAMD4 (ENSOTSG00005042298)	ENSOTSG00005042297	cerk (ENSOTSG00005042294)	tbc1d22a (ENSOTSG00005042293)	tafa5a (ENSOTSG00005042292)	BRD1 (ENSOTSG00005042291)	zbed4 (ENSOTSG00005042290)	alg12 (ENSOTSG00005042289)
Huchen	MODERN SPECIES	4472															SLC2A13 (ENSHHUG00000048318)	ABCD2 (ENSHHUG00000048276) ##22	ENSHHUG00000047959
Salmoninae	ANCESTRAL SPECIES	208	ENSGT00940000155197.a.a	ENSGT00940000154098.a.f.f	ENSGT00390000008708.b.a	ENSGT00940000153525.i.a.a	ENSGT00940000178181.a	ENSGT00390000018612.a.b.f	ENSGT00390000012501.f	ENSGT00390000014507.a.b.b	ENSGT00940000157013.g	ENSGT00390000014894.h	ENSGT00510000048671.b	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b.f	ENSGT00940000155870.a.a.e.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b.p ##22	ENSGT00940000155323.b.e	ENSGT00940000159679.e.a	ENSGT00390000012906.d	ENSGT00390000012942.c	ENSGT00390000014323.j.a	ENSGT00940000159839.d.a.a.b	ENSGT00390000010968.b.d	ENSGT00940000156976.fb.l	ENSGT00940000159840.g.a	ENSGT00940000160682.b.c.b.a.b	ENSGT00940000157236.i.c	ENSGT00940000161365.g	ENSGT00950000183090.B.f	ENSGT00940000160071.g	ENSGT00940000153394.c.b.b.c.a.a.b
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00940000155197.a.a	ENSGT00940000154098.a.f.f	ENSGT00390000008708.b.a	ENSGT00940000153525.i.a.a	ENSGT00940000178181.a	ENSGT00390000018612.a.b.f	ENSGT00390000012501.f	ENSGT00390000014507.a.b.b	ENSGT00940000157013.g	ENSGT00390000014894.h	ENSGT00510000048671.b	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b.f	ENSGT00940000155870.a.a.e.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b.p ##22	ENSGT00940000155323.b.e	ENSGT00940000159679.e.a	ENSGT00390000012906.d	ENSGT00390000012942.c	ENSGT00390000014323.j.a	ENSGT00940000159839.d.a.a.b	ENSGT00390000010968.b.d	ENSGT00940000156976.fb.l	ENSGT00940000159840.g.a	ENSGT00940000160682.b.c.b.a.b	ENSGT00940000160682.b.c.b.a.a.a	ENSGT00940000157236.i.c	ENSGT00940000161365.g	ENSGT00950000183090.B.f	ENSGT00940000160071.g
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT01030000235060.e.b	ENSGT00940000155197.a.a	ENSGT00940000154098.a.f.f	ENSGT00390000008708.b.a	ENSGT00940000153525.i.a.a	ENSGT00940000178181.a	ENSGT00390000018612.a.b.f	ENSGT00390000012501.f	ENSGT00390000014507.a.b.b	ENSGT00940000157013.g	ENSGT00390000014894.h	ENSGT00510000048671.b	ENSGT01080000257336.b.e.a.a	ENSGT00940000155870.a.a.e.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b.p ##22	ENSGT00940000155323.b.e	ENSGT00940000159679.e.a	ENSGT00390000012906.d	ENSGT00390000012942.c	ENSGT00390000014323.j.a	ENSGT00940000159839.d.a.a.b	ENSGT00390000010968.b.d	ENSGT00940000156976.fb.l	ENSGT00940000159840.g.a	ENSGT00940000160682.b.c.b.a.b	ENSGT00940000157236.i.c	ENSGT00940000161365.g	ENSGT00950000183090.B.f	ENSGT00940000160071.g	ENSGT00940000153394.c.b.b.c.a.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT00530000064318.j.b	ENSGT01030000235060.e.b	ENSGT00940000155197.a.a	ENSGT00940000154098.a.f.f	ENSGT00390000008708.b.a	ENSGT00940000153525.i.a.a	ENSGT00940000178181.a	ENSGT00390000018612.a.b.f	ENSGT00390000012501.f.a.b	ENSGT00390000014507.a.b.b	ENSGT00940000157013.g	ENSGT00510000048671.b	ENSGT01080000257336.b.e.a.a	ENSGT00940000155870.a.a.e.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b.p ##22	ENSGT00940000155323.b.e	ENSGT00940000159679.e.a	ENSGT00390000012906.d	ENSGT00390000012942.c	ENSGT00390000014323.j.a	ENSGT00940000159839.d.a.a.b	ENSGT00390000010968.b.d	ENSGT00940000156976.fb.l	ENSGT00940000159840.g.a	ENSGT00940000160682.b.c.b.a.b.a	ENSGT00940000157236.i.c	ENSGT00940000161365.g	ENSGT00950000183090.B.f	ENSGT00940000160071.g	ENSGT00940000153394.c.b.b.c.a.a.b
Coho salmon	MODERN SPECIES	29	opn1sw1 (ENSOKIG00005016572)	calua (ENSOKIG00005016587)	UPF2 (ENSOKIG00005016613)	ENSOKIG00005016681	STRAP (ENSOKIG00005016702)	ENSOKIG00005016776	SLC25A3 (ENSOKIG00005016823)	SLC2A13 (ENSOKIG00005016874)	ENSOKIG00005016944	SPX (ENSOKIG00005016956)	golt1ba (ENSOKIG00005016993)	RECQL (ENSOKIG00005017032)	IAPP (ENSOKIG00005017586)	ENSOKIG00005017631	ENSOKIG00005017902	ABCD2 (ENSOKIG00005017930) ##22	ENSOKIG00005018286	ENSOKIG00005021068	ENSOKIG00005021653	TPRKB (ENSOKIG00005021678)	ENSOKIG00005021883	GRAMD4 (ENSOKIG00005023416)	tbc1d22a (ENSOKIG00005031295)	ENSOKIG00005031679	tafa5a (ENSOKIG00005031692)	ENSOKIG00005031714	zbed4 (ENSOKIG00005031736)	alg12 (ENSOKIG00005031746)	creld2 (ENSOKIG00005031782)	ENSOKIG00005031926	PIM3 (ENSOKIG00005031937)
Chinook salmon	MODERN SPECIES	6	ENSOTSG00005009586	ENSOTSG00005009588	strap (ENSOTSG00005009592)	tmpoa (ENSOTSG00005009597)	SLC25A3 (ENSOTSG00005009600)	LDHB (ENSOTSG00005009639)	ENSOTSG00005009640	gys2 (ENSOTSG00005009641)	spx (ENSOTSG00005009646)	golt1ba (ENSOTSG00005009657)	recql (ENSOTSG00005009658)	IAPP (ENSOTSG00005009675)	ENSOTSG00005009676	SLC2A13 (ENSOTSG00005009682)	ENSOTSG00005009683	ABCD2 (ENSOTSG00005009684) ##22	ENSOTSG00005009800	ENSOTSG00005010571	alg10 (ENSOTSG00005010572)	tprkb (ENSOTSG00005010573)	trmu (ENSOTSG00005010575)	ENSOTSG00005010587	GRAMD4 (ENSOTSG00005011078)	ENSOTSG00005011399	tbc1d22a (ENSOTSG00005011400)	tafa5a (ENSOTSG00005011896)	ENSOTSG00005011899	ENSOTSG00005011900	zbed4 (ENSOTSG00005011901)	alg12 (ENSOTSG00005011903)	creld2 (ENSOTSG00005011904)
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000014538	ENSOMYG00000014342	ENSOMYG00000014368	ENSOMYG00000014401	ENSOMYG00000014424	LDHB (ENSOMYG00000014451)	ENSOMYG00000056535	GYS2 (ENSOMYG00000014475)	SPX (ENSOMYG00000014546)	GOLT1B (ENSOMYG00000014582)	RECQL (ENSOMYG00000014649)	PYROXD1 (ENSOMYG00000015641)	IAPP (ENSOMYG00000015660)	ENSOMYG00000015724	ENSOMYG00000016604	ENSOMYG00000017012 ##22	ENSOMYG00000018215	ENSOMYG00000026044	ENSOMYG00000073871	ENSOMYG00000026052	ENSOMYG00000026403	GRAMD4 (ENSOMYG00000027837)	ENSOMYG00000072763	tbc1d22a (ENSOMYG00000028009)	ENSOMYG00000059329	ENSOMYG00000024524	ENSOMYG00000068186	tafa5a (ENSOMYG00000055476)	ENSOMYG00000028322	zbed4 (ENSOMYG00000028330)	alg12 (ENSOMYG00000028338)
Salmo	ANCESTRAL SPECIES	25	ENSGT00940000155197.a.a	ENSGT00940000154098.a.f.f	ENSGT00390000008708.b.a	ENSGT00940000153525.i.a.a	ENSGT00940000178181.a	ENSGT00390000018612.a.b.f	ENSGT00390000012501.f	ENSGT00390000014507.a.b.b	ENSGT00940000157013.g	ENSGT00390000014894.h	ENSGT00510000048671.b	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b.f	ENSGT00940000155870.a.a.e.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b.p ##22	ENSGT00940000155323.b.e	ENSGT00940000159679.e.a	ENSGT00390000012906.d	ENSGT00390000012942.c	ENSGT00390000014323.j.a	ENSGT00940000159839.d.a.a.b	ENSGT00390000010968.b.d	ENSGT00940000156976.fb.l	ENSGT00940000159840.g.a	ENSGT00940000160682.b.c.b.a.a.a	ENSGT00940000157236.i.c	ENSGT00940000161365.g	ENSGT00950000183090.B.f	ENSGT00940000160071.g	ENSGT00940000153394.c.b.b.c.a.a.b
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000056061	tmpoa (ENSSSAG00000097715)	ENSSSAG00000055931	LDHB (ENSSSAG00000055896)	ENSSSAG00000055881	SPX (ENSSSAG00000066346)	golt1ba (ENSSSAG00000079599)	ENSSSAG00000088865	RECQL (ENSSSAG00000054755)	PYROXD1 (ENSSSAG00000054729)	IAPP (ENSSSAG00000054726)	ENSSSAG00000053454	ENSSSAG00000053339	SLC2A13 (ENSSSAG00000053166)	ENSSSAG00000053148	ABCD2 (ENSSSAG00000052715) ##22	ENSSSAG00000042964	CPNE8 (ENSSSAG00000066974)	alg10 (ENSSSAG00000066958)	ENSSSAG00000099738	tprkb (ENSSSAG00000041543)	trmu (ENSSSAG00000084526)	ENSSSAG00000008083	cerk (ENSSSAG00000007359)	GRAMD4 (ENSSSAG00000007506)	tbc1d22a (ENSSSAG00000005337)	ENSSSAG00000090530	tafa5a (ENSSSAG00000088442)	ENSSSAG00000115239	zbed4 (ENSSSAG00000005143)	alg12 (ENSSSAG00000005116)
River trout	MODERN SPECIES	38	ENSSTUG00000002146	strap (ENSSTUG00000001717)	ENSSTUG00000001489	slc25a3b (ENSSTUG00000001182)	LDHB (ENSSTUG00000047233)	ENSSTUG00000047222	ENSSTUG00000047220	gys2 (ENSSTUG00000047206)	spx (ENSSTUG00000047180)	golt1ba (ENSSTUG00000047171)	recql (ENSSTUG00000046588)	IAPP (ENSSTUG00000046548)	ENSSTUG00000046378	slco1d1 (ENSSTUG00000046334)	SLC2A13 (ENSSTUG00000046292)	ABCD2 (ENSSTUG00000046146) ##22	ENSSTUG00000045697	CPNE8 (ENSSTUG00000045583)	alg10 (ENSSTUG00000045575)	tprkb (ENSSTUG00000045567)	trmu (ENSSTUG00000045549)	ENSSTUG00000045211	GRAMD4 (ENSSTUG00000044480)	tbc1d22a (ENSSTUG00000044049)	tafa5a (ENSSTUG00000044004)	ENSSTUG00000043984	alg12 (ENSSTUG00000043941)	creld2 (ENSSTUG00000043893)	PIM3 (ENSSTUG00000043883)	ENSSTUG00000043873	USP15 (ENSSTUG00000042570)
Huchen	MODERN SPECIES	120	strap (ENSHHUG00000030554)	ENSHHUG00000030561	slc25a3b (ENSHHUG00000030564)	LDHB (ENSHHUG00000030628)	ENSHHUG00000030989	gys2 (ENSHHUG00000030997)	spx (ENSHHUG00000031022)	golt1ba (ENSHHUG00000031033)	recql (ENSHHUG00000031041)	pyroxd1 (ENSHHUG00000031091)	IAPP (ENSHHUG00000031110)	ENSHHUG00000031133	ENSHHUG00000031406	SLC2A13 (ENSHHUG00000031410)	ENSHHUG00000031422	ABCD2 (ENSHHUG00000031434) ##22	ENSHHUG00000031495	ENSHHUG00000031673	ENSHHUG00000031753	alg10 (ENSHHUG00000031758)	tprkb (ENSHHUG00000031759)	trmu (ENSHHUG00000031765)	ENSHHUG00000031802	GRAMD4 (ENSHHUG00000031908)	ENSHHUG00000031982	ENSHHUG00000031994	tbc1d22a (ENSHHUG00000031995)
Northern pike	MODERN SPECIES	22	strap (ENSELUG00000011937)	tmpoa (ENSELUG00000011873)	SLC25A3 (ENSELUG00000011737)	LDHB (ENSELUG00000011710)	ENSELUG00000011694	gys2 (ENSELUG00000000420)	spx (ENSELUG00000011612)	golt1ba (ENSELUG00000011564)	recql (ENSELUG00000011528)	pyroxd1 (ENSELUG00000011480)	IAPP (ENSELUG00000011444)	ENSELUG00000022541	ENSELUG00000011419	ENSELUG00000011141	SLC2A13 (ENSELUG00000009803)	ABCD2 (ENSELUG00000001091) ##22	ENSELUG00000009705	CPNE8 (ENSELUG00000009620)	alg10 (ENSELUG00000009542)	tprkb (ENSELUG00000009526)	ENSELUG00000009484	trmu (ENSELUG00000009464)	CELSR1 (ENSELUG00000009420)	GRAMD4 (ENSELUG00000009283)	cerk (ENSELUG00000009188)	tbc1d22a (ENSELUG00000009067)	tafa5a (ENSELUG00000008937)	BRD1 (ENSELUG00000008896)	zbed4 (ENSELUG00000000336)	alg12 (ENSELUG00000008855)	creld2 (ENSELUG00000008832)
Acanthomorphata	ANCESTRAL SPECIES	30	ENSGT00940000155166.A	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Cod	MODERN SPECIES	10	ENSGMOG00000006869	arl1 (ENSGMOG00000006859)	ENSGMOG00000006762	SLC5A8 (ENSGMOG00000006734)	lyrm5a (ENSGMOG00000034553)	DNAI7 (ENSGMOG00000006708)	ENSGMOG00000036265	ENSGMOG00000027118	ETNK1 (ENSGMOG00000005482)	ENSGMOG00000005449	ENSGMOG00000017160	ENSGMOG00000017146	ENSGMOG00000017116	SLC2A13 (ENSGMOG00000017940)	ENSGMOG00000028113	ABCD2 (ENSGMOG00000017928) ##22	ENSGMOG00000006891	CPNE8 (ENSGMOG00000003002)	alg10 (ENSGMOG00000029704)	tprkb (ENSGMOG00000001388)	ENSGMOG00000001338	ENSGMOG00000022866	ENSGMOG00000024402	ENSGMOG00000034508	ENSGMOG00000037036	ENSGMOG00000030744	trmu (ENSGMOG00000001323)	ENSGMOG00000027396	ENSGMOG00000033282	ENSGMOG00000023530	ENSGMOG00000003513
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00940000155166.A	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Pinecone sodierfish	MODERN SPECIES	15	UTP20 (ENSMMDG00005020673)	SLC5A8 (ENSMMDG00005020594)	lyrm5a (ENSMMDG00005020583)	dnai7 (ENSMMDG00005020579)	lrmp (ENSMMDG00005020549)	bcat1 (ENSMMDG00005020425)	sox5 (ENSMMDG00005020112)	ETNK1 (ENSMMDG00005020072)	pyroxd1 (ENSMMDG00005020064)	IAPP (ENSMMDG00005020061)	ENSMMDG00005019332	slco1d1 (ENSMMDG00005019252)	ENSMMDG00005019242	ENSMMDG00005017941	SLC2A13 (ENSMMDG00005017894)	ABCD2 (ENSMMDG00005017889) ##22	ENSMMDG00005017867	CPNE8 (ENSMMDG00005017828)	alg10 (ENSMMDG00005017822)	tprkb (ENSMMDG00005017820)	ENSMMDG00005017818	trmu (ENSMMDG00005017816)	ENSMMDG00005017803	GRAMD4 (ENSMMDG00005017793)	cerk (ENSMMDG00005017789)	tbc1d22a (ENSMMDG00005017755)	ENSMMDG00005017742	tafa5a (ENSMMDG00005017740)	BRD1 (ENSMMDG00005017736)	zbed4 (ENSMMDG00005017733)	alg12 (ENSMMDG00005017730)
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT00940000155166.A	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Tiger tail seahorse	MODERN SPECIES	260	tmpoa (ENSHCOG00000012574)	golt1ba (ENSHCOG00000012586)	recql (ENSHCOG00000012735)	plekha5 (ENSHCOG00000000371)	aebp2 (ENSHCOG00000012795)	ndufa5 (ENSHCOG00000012802)	COG5 (ENSHCOG00000012879)	TMTC1 (ENSHCOG00000012935)	rbm46 (ENSHCOG00000012998)	ipo8 (ENSHCOG00000013067)	ENSHCOG00000013084	ENSHCOG00000013098	ENSHCOG00000013114	sult4a1 (ENSHCOG00000013124)	ALDH1L2 (ENSHCOG00000013196)	ABCD2 (ENSHCOG00000013236) ##22	ENSHCOG00000013297	ENSHCOG00000013316	ENSHCOG00000013407	alg10 (ENSHCOG00000013415)	tprkb (ENSHCOG00000013429)	ENSHCOG00000013448	trmu (ENSHCOG00000013459)	CELSR1 (ENSHCOG00000013532)	GRAMD4 (ENSHCOG00000013575)	cerk (ENSHCOG00000013597)	tbc1d22a (ENSHCOG00000013647)
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Ovalentaria_B	ANCESTRAL SPECIES	23	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Cichlidae	ANCESTRAL SPECIES	24	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245.v.b	ENSGT00940000165245.v.a.a	ENSGT00940000165245.u	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245.v.b	ENSGT00940000165245.v.a.a	ENSGT00940000165245.u	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00940000155166.A.o.d	ENSGT00940000155166.A.o.c	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245.u	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00940000155166.A.o.d	ENSGT00940000155166.A.o.c	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245.u	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Burton s mouthbrooder	MODERN SPECIES	280	lyrm5a (ENSHBUG00000019381)	dnai7 (ENSHBUG00000019389)	lrmp (ENSHBUG00000019458)	bcat1 (ENSHBUG00000019526)	sox5 (ENSHBUG00000019573)	ETNK1 (ENSHBUG00000019619)	pyroxd1 (ENSHBUG00000019690)	ENSHBUG00000019701	ENSHBUG00000022188	slco1d1 (ENSHBUG00000022392)	ENSHBUG00000022766	ENSHBUG00000022810	ENSHBUG00000023078	SLC2A13 (ENSHBUG00000023144)	ENSHBUG00000023158	ABCD2 (ENSHBUG00000023195) ##22	ENSHBUG00000023304	CPNE8 (ENSHBUG00000023338)	alg10 (ENSHBUG00000023353)	tprkb (ENSHBUG00000023377)	ENSHBUG00000023404	trmu (ENSHBUG00000023421)	ENSHBUG00000023638	GRAMD4 (ENSHBUG00000023754)	cerk (ENSHBUG00000023804)	tbc1d22a (ENSHBUG00000003836)	tafa5a (ENSHBUG00000003879)	BRD1 (ENSHBUG00000003949)	zbed4 (ENSHBUG00000003974)	alg12 (ENSHBUG00000004004)	creld2 (ENSHBUG00000004017)
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00940000155166.A.o.d	ENSGT00940000155166.A.o.c	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245.u	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000160682.b.d	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B
P. nyererei	MODERN SPECIES	309				lyrm5a (ENSPNYG00000004548)	dnai7 (ENSPNYG00000004559)	lrmp (ENSPNYG00000004620)	bcat1 (ENSPNYG00000004811)	sox5 (ENSPNYG00000004838)	ETNK1 (ENSPNYG00000004897)	pyroxd1 (ENSPNYG00000004948)	IAPP (ENSPNYG00000005001)	ENSPNYG00000005028	slco1d1 (ENSPNYG00000005085)	ENSPNYG00000005179	SLC2A13 (ENSPNYG00000005373)	ABCD2 (ENSPNYG00000005406) ##22	ENSPNYG00000005444	CPNE8 (ENSPNYG00000005537)	alg10 (ENSPNYG00000005579)	tprkb (ENSPNYG00000005590)	ENSPNYG00000005609	trmu (ENSPNYG00000005629)	ENSPNYG00000005651	GRAMD4 (ENSPNYG00000005743)	cerk (ENSPNYG00000005787)	tbc1d22a (ENSPNYG00000005856)	tafa5a (ENSPNYG00000005917)	ENSPNYG00000005934	BRD1 (ENSPNYG00000005985)	zbed4 (ENSPNYG00000006082)	creld2 (ENSPNYG00000006094)
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00940000155166.A.o.c.c.a.b	ENSGT00940000155166.A.o.c.d	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245.u	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000160682.b.d	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B
Eastern happy	MODERN SPECIES	8	SLC5A8 (ENSACLG00000007962)	SLC5A8 (ENSACLG00000007949)	lyrm5a (ENSACLG00000007939)	dnai7 (ENSACLG00000007911)	lrmp (ENSACLG00000007736)	bcat1 (ENSACLG00000007695)	sox5 (ENSACLG00000007564)	ETNK1 (ENSACLG00000006546)	pyroxd1 (ENSACLG00000006512)	ENSACLG00000006495	ENSACLG00000006470	slco1d1 (ENSACLG00000006402)	ENSACLG00000005957	SLC2A13 (ENSACLG00000005906)	ENSACLG00000005879	ABCD2 (ENSACLG00000005856) ##22	ENSACLG00000005613	CPNE8 (ENSACLG00000005474)	ENSACLG00000005466	alg10 (ENSACLG00000005463)	tprkb (ENSACLG00000005449)	ENSACLG00000005417	trmu (ENSACLG00000005395)	ENSACLG00000005330	GRAMD4 (ENSACLG00000004745)	cerk (ENSACLG00000004716)	ENSACLG00000004711	tbc1d22a (ENSACLG00000004530)	TAFA5 (ENSACLG00000004353)	BRD1 (ENSACLG00000004172)	zbed4 (ENSACLG00000004167)
Zebra mbuna	MODERN SPECIES	1099	SLC5A8 (ENSMZEG00005018078)	SLC5A8 (ENSMZEG00005018056)	SLC5A8 (ENSMZEG00005018045)	lyrm5a (ENSMZEG00005018039)	dnai7 (ENSMZEG00005018035)	lrmp (ENSMZEG00005018015)	bcat1 (ENSMZEG00005018006)	sox5 (ENSMZEG00005017997)	ETNK1 (ENSMZEG00005017987)	pyroxd1 (ENSMZEG00005017981)	ENSMZEG00005017971	ENSMZEG00005016826	slco1d1 (ENSMZEG00005016761)	ENSMZEG00005015966	SLC2A13 (ENSMZEG00005015910)	ABCD2 (ENSMZEG00005015888) ##22	ENSMZEG00005015858	CPNE8 (ENSMZEG00005015833)	alg10 (ENSMZEG00005015825)	tprkb (ENSMZEG00005015816)	ENSMZEG00005015804	trmu (ENSMZEG00005015797)	ENSMZEG00005015715	GRAMD4 (ENSMZEG00005015613)	cerk (ENSMZEG00005015578)	tbc1d22a (ENSMZEG00005015551)	tafa5a (ENSMZEG00005015542)	ENSMZEG00005015509	ENSMZEG00005015499	BRD1 (ENSMZEG00005015483)	zbed4 (ENSMZEG00005015468)
Lyretail cichlid	MODERN SPECIES	291	sox5 (ENSNBRG00000021691)	ENSNBRG00000021724	ETNK1 (ENSNBRG00000021742)	pyroxd1 (ENSNBRG00000021801)	IAPP (ENSNBRG00000021832)	ENSNBRG00000021883	slco1d1 (ENSNBRG00000022106)	ENSNBRG00000022142	ENSNBRG00000022164	ENSNBRG00000022226	ENSNBRG00000022252	ENSNBRG00000022285	ENSNBRG00000022339	ENSNBRG00000022451	SLC2A13 (ENSNBRG00000022543)	ABCD2 (ENSNBRG00000022562) ##22	ENSNBRG00000022588	CPNE8 (ENSNBRG00000022624)	ENSNBRG00000022662	ENSNBRG00000022669	trmu (ENSNBRG00000022690)	ENSNBRG00000022749	GRAMD4 (ENSNBRG00000022794)	cerk (ENSNBRG00000022836)	tbc1d22a (ENSNBRG00000022929)	tafa5a (ENSNBRG00000022955)	ENSNBRG00000022963	BRD1 (ENSNBRG00000022978)	alg12 (ENSNBRG00000023011)	creld2 (ENSNBRG00000023035)	pim3 (ENSNBRG00000023049)
Nile tilapia	MODERN SPECIES	8	SLC5A8 (ENSONIG00000033955)	SLC5A8 (ENSONIG00000009901)	lyrm5a (ENSONIG00000042487)	dnai7 (ENSONIG00000009899)	lrmp (ENSONIG00000033143)	bcat1 (ENSONIG00000009889)	sox5 (ENSONIG00000009878)	ETNK1 (ENSONIG00000009876)	pyroxd1 (ENSONIG00000009873)	iapp (ENSONIG00000033694)	ENSONIG00000009860	slco1d1 (ENSONIG00000029482)	ENSONIG00000032415	ENSONIG00000009851	SLC2A13 (ENSONIG00000009848)	ABCD2 (ENSONIG00000009846) ##22	ENSONIG00000009841	CPNE8 (ENSONIG00000009828)	alg10 (ENSONIG00000031733)	tprkb (ENSONIG00000009824)	ENSONIG00000009823	trmu (ENSONIG00000009821)	ENSONIG00000009813	GRAMD4 (ENSONIG00000009808)	cerk (ENSONIG00000009804)	tbc1d22a (ENSONIG00000009800)	tafa5a (ENSONIG00000009799)	ENSONIG00000030901	BRD1 (ENSONIG00000009798)	zbed4 (ENSONIG00000009795)	alg12 (ENSONIG00000038559)
Midas cichlid	MODERN SPECIES	536		lrmp (ENSACIG00000023659)	bcat1 (ENSACIG00000023650)	sox5 (ENSACIG00000023648)	ETNK1 (ENSACIG00000023640)	pyroxd1 (ENSACIG00000023632)	IAPP (ENSACIG00000023627)	ENSACIG00000023318	slco1d1 (ENSACIG00000023197)	ENSACIG00000023136	ENSACIG00000023125	ENSACIG00000023087	ENSACIG00000023047	ENSACIG00000022893	SLC2A13 (ENSACIG00000022873)	ABCD2 (ENSACIG00000022864) ##22
Pomacentridae	ANCESTRAL SPECIES	40	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.c.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Pomacentridae_A	ANCESTRAL SPECIES	23	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000179204	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.c.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Amphiprion	ANCESTRAL SPECIES	19	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00390000009532.A.d.a	ENSGT00940000179204	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.c.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942
Orange clownfish	MODERN SPECIES	13	UTP20 (ENSAPEG00000011605)	SLC5A8 (ENSAPEG00000011408)	lyrm5a (ENSAPEG00000011393)	ENSAPEG00000011208	lrmp (ENSAPEG00000010917)	bcat1 (ENSAPEG00000010812)	ENSAPEG00000010796	sox5 (ENSAPEG00000010746)	ETNK1 (ENSAPEG00000010701)	pyroxd1 (ENSAPEG00000010624)	IAPP (ENSAPEG00000010591)	ENSAPEG00000009757	slco1d1 (ENSAPEG00000009648)	ENSAPEG00000009548	SLC2A13 (ENSAPEG00000009493)	ABCD2 (ENSAPEG00000009450) ##22	ENSAPEG00000009339	CPNE8 (ENSAPEG00000009053)	alg10 (ENSAPEG00000008990)	tprkb (ENSAPEG00000008986)	spic (ENSAPEG00000008947)	mybpc1 (ENSAPEG00000008858)	chpt1 (ENSAPEG00000008824)	gnptab (ENSAPEG00000008702)	dram1 (ENSAPEG00000008682)	washc3 (ENSAPEG00000008644)	ENSAPEG00000008628	ENSAPEG00000008602	ENSAPEG00000008581	ENSAPEG00000008564	mcat (ENSAPEG00000008552)
Clown anemonefish	MODERN SPECIES	1045													ENSAOCG00000008859	SLC2A13 (ENSAOCG00000008468)	ENSAOCG00000008423	ABCD2 (ENSAOCG00000008379) ##22	ENSAOCG00000008353
Spiny chromis	MODERN SPECIES	42	SLC5A8 (ENSAPOG00000002287)	SLC5A8 (ENSAPOG00000002252)	lyrm5a (ENSAPOG00000002229)	dnai7 (ENSAPOG00000002215)	lrmp (ENSAPOG00000002179)	bcat1 (ENSAPOG00000002125)	ENSAPOG00000002102	sox5 (ENSAPOG00000000041)	ETNK1 (ENSAPOG00000002053)	pyroxd1 (ENSAPOG00000002033)	IAPP (ENSAPOG00000001997)	ENSAPOG00000001983	slco1d1 (ENSAPOG00000001955)	ENSAPOG00000001911	SLC2A13 (ENSAPOG00000001765)	ABCD2 (ENSAPOG00000001731) ##22
Bicolor damselfish	MODERN SPECIES	1484														ENSSPAG00000016882	SLC2A13 (ENSSPAG00000016854)	ABCD2 (ENSSPAG00000016823) ##22	ENSSPAG00000016795
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000163235.E.l	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000163235.E.l	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Cyprinodontoidei	ANCESTRAL SPECIES	20	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b.i	ENSGT01080000257336.b.e.a.b.j	ENSGT00940000163235.E.l	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT00940000177875	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b.i	ENSGT01080000257336.b.e.a.b.j	ENSGT00940000163235.E.l	ENSGT00940000165245	ENSGT00940000155870.a.a.k	ENSGT00940000155870.a.a.l	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00940000175296	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B
Poecilia	ANCESTRAL SPECIES	28	ENSGT00940000155166.A.p	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b.i	ENSGT01080000257336.b.e.a.b.j	ENSGT00940000163235.E.l	ENSGT00940000165245	ENSGT00940000155870.a.a.k	ENSGT00940000155870.a.a.l	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00940000175296	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B
NAME_6	ANCESTRAL SPECIES	30	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b.j	ENSGT00940000163235.E.l	ENSGT00940000165245	ENSGT00940000155870.a.a.k	ENSGT00940000155870.a.a.l	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00940000175296	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B
Amazon molly	MODERN SPECIES	261	ENSPFOG00000003001	DENND11 (ENSPFOG00000003121)	arl1 (ENSPFOG00000003241)	UTP20 (ENSPFOG00000003312)	SLC5A8 (ENSPFOG00000004090)	lrmp (ENSPFOG00000004269)	bcat1 (ENSPFOG00000004445)	sox5 (ENSPFOG00000004694)	ETNK1 (ENSPFOG00000005087)	pyroxd1 (ENSPFOG00000005250)	ENSPFOG00000005414	slco1d1 (ENSPFOG00000005723)	ENSPFOG00000022386	ENSPFOG00000005852	SLC2A13 (ENSPFOG00000006285)	ABCD2 (ENSPFOG00000006544) ##22	ENSPFOG00000006795	CPNE8 (ENSPFOG00000007544)	ENSPFOG00000022453	alg10 (ENSPFOG00000008092)	tprkb (ENSPFOG00000008120)	ENSPFOG00000008158	trmu (ENSPFOG00000008197)	CELSR1 (ENSPFOG00000008354)	GRAMD4 (ENSPFOG00000009239)	cerk (ENSPFOG00000009295)	tbc1d22a (ENSPFOG00000009505)	tafa5a (ENSPFOG00000009800)	BRD1 (ENSPFOG00000009805)	zbed4 (ENSPFOG00000020326)	alg12 (ENSPFOG00000009885)
Sailfin molly	MODERN SPECIES	1823														ENSPLAG00000012962	ENSPLAG00000012943	ABCD2 (ENSPLAG00000012922) ##22	ENSPLAG00000012882
Guppy	MODERN SPECIES	454	pah (ENSPREG00000006984)	th2 (ENSPREG00000007023)	nup37 (ENSPREG00000007053)	parpbp (ENSPREG00000007077)	ENSPREG00000007091	igf1 (ENSPREG00000007109)	ENSPREG00000007135	ENSPREG00000007146	btbd11a (ENSPREG00000007168)	ENSPREG00000007220	slco1d1 (ENSPREG00000007258)	slco1d1 (ENSPREG00000007441)	ENSPREG00000007468	SLC2A13 (ENSPREG00000007504)	ENSPREG00000007544	ABCD2 (ENSPREG00000007569) ##22	ENSPREG00000007642	CPNE8 (ENSPREG00000007888)	ENSPREG00000007933	ENSPREG00000007942	alg10 (ENSPREG00000007949)	tprkb (ENSPREG00000007951)	ENSPREG00000007960	trmu (ENSPREG00000007980)	ENSPREG00000008022	GRAMD4 (ENSPREG00000008119)	cerk (ENSPREG00000008206)	tbc1d22a (ENSPREG00000008223)	tafa5a (ENSPREG00000008265)	BRD1 (ENSPREG00000008282)	zbed4 (ENSPREG00000008307)
Platyfish	MODERN SPECIES	8	bcat1 (ENSXMAG00000006534)	sox5 (ENSXMAG00000006550)	ETNK1 (ENSXMAG00000028217)	pyroxd1 (ENSXMAG00000006587)	ENSXMAG00000026420	ENSXMAG00000028968	ENSXMAG00000025811	ENSXMAG00000020831	ENSXMAG00000026700	ENSXMAG00000026747	ENSXMAG00000021670	ENSXMAG00000006603	slco1d1 (ENSXMAG00000006604)	slco1d1 (ENSXMAG00000006608)	SLC2A13 (ENSXMAG00000006611)	ABCD2 (ENSXMAG00000005009) ##22	ENSXMAG00000004964	ENSXMAG00000026640	CPNE8 (ENSXMAG00000006615)	ENSXMAG00000027544	alg10 (ENSXMAG00000006682)	ENSXMAG00000006692	tprkb (ENSXMAG00000023694)	trmu (ENSXMAG00000006697)	ENSXMAG00000006721	GRAMD4 (ENSXMAG00000006767)	cerk (ENSXMAG00000020875)	tbc1d22a (ENSXMAG00000021225)	tafa5a (ENSXMAG00000027981)	BRD1 (ENSXMAG00000004611)	zbed4 (ENSXMAG00000019580)
NAME_4	DUPLICATION
NAME_4	ANCESTRAL SPECIES	95	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b.i	ENSGT01080000257336.b.e.a.b.j	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b.q ##22	ENSGT00950000182955.a.b.b.r ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.g.a
Mummichog	MODERN SPECIES	2380	arl1 (ENSFHEG00000004171)	UTP20 (ENSFHEG00000004142)	SLC5A8 (ENSFHEG00000004009)	lrmp (ENSFHEG00000003907)	bcat1 (ENSFHEG00000003847)	sox5 (ENSFHEG00000003762)	ETNK1 (ENSFHEG00000003744)	ENSFHEG00000000890	ENSFHEG00000000675	slco1d1 (ENSFHEG00000003689)	slco1d1 (ENSFHEG00000003524)	ENSFHEG00000003496	ENSFHEG00000003487	ENSFHEG00000003471	SLC2A13 (ENSFHEG00000003412)	ABCD2 (ENSFHEG00000003386) ##22	ENSFHEG00000003363	CPNE8 (ENSFHEG00000003261)	alg10 (ENSFHEG00000003201)	tprkb (ENSFHEG00000003196)	ENSFHEG00000003183	trmu (ENSFHEG00000003162)
NAME_4	ANCESTRAL SPECIES	95	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b.i	ENSGT01080000257336.b.e.a.b.j	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b.q ##22	ENSGT00950000182955.a.b.b.r ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.g.a
Sheepshead minnow	MODERN SPECIES	140	ENSCVAG00000001656	sox5 (ENSCVAG00000001652)	ENSCVAG00000001639	ETNK1 (ENSCVAG00000001633)	pyroxd1 (ENSCVAG00000001628)	ENSCVAG00000001621	ENSCVAG00000001605	slco1d1 (ENSCVAG00000001515)	slco1d1 (ENSCVAG00000001504)	ENSCVAG00000001467	ENSCVAG00000001464	ENSCVAG00000001456	ENSCVAG00000001452	ENSCVAG00000001448	SLC2A13 (ENSCVAG00000001445)	ABCD2 (ENSCVAG00000001438) ##22	ENSCVAG00000001422	CPNE8 (ENSCVAG00000001387)	alg10 (ENSCVAG00000001379)	tprkb (ENSCVAG00000001376)	ENSCVAG00000001370	trmu (ENSCVAG00000001366)	ENSCVAG00000001349	GRAMD4 (ENSCVAG00000001319)	cerk (ENSCVAG00000001305)	tbc1d22a (ENSCVAG00000001301)
Mummichog	MODERN SPECIES	1743																ABCD2 (ENSFHEG00000008328) ##22
Aplocheiloidei	ANCESTRAL SPECIES	14	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Turquoise killifish	MODERN SPECIES	1610	UTP20 (ENSNFUG00015004096)	SLC5A8 (ENSNFUG00015004189)	lyrm5a (ENSNFUG00015004201)	dnai7 (ENSNFUG00015004205)	lrmp (ENSNFUG00015004217)	sox5 (ENSNFUG00015004261)	ENSNFUG00015004338	ETNK1 (ENSNFUG00015004343)	pyroxd1 (ENSNFUG00015004355)	ENSNFUG00015004379	ENSNFUG00015004383	ENSNFUG00015004389	Nfu_g_1_011771 (ENSNFUG00015004408)	SLC2A13 (ENSNFUG00015004451)	ENSNFUG00015004468	ABCD2 (ENSNFUG00015004485) ##22	ENSNFUG00015004638	CPNE8 (ENSNFUG00015005811)	ENSNFUG00015006223	ALG10 (ENSNFUG00015006231)	tprkb (ENSNFUG00015006234)	ENSNFUG00015006241	ENSNFUG00015006248	ENSNFUG00015000166	ENSNFUG00015000180	HIST1H2BD (ENSNFUG00015000196)	ENSNFUG00015000207	ENSNFUG00015000214	Nfu_g_1_000275 (ENSNFUG00015000221)	ENSNFUG00015000228	trmu (ENSNFUG00015000246)
Mangrove rivulus	MODERN SPECIES	129	arl1 (ENSKMAG00000005931)	UTP20 (ENSKMAG00000005972)	SLC5A8 (ENSKMAG00000006119)	SLC5A8 (ENSKMAG00000006201)	lyrm5a (ENSKMAG00000006221)	dnai7 (ENSKMAG00000006233)	lrmp (ENSKMAG00000006332)	sox5 (ENSKMAG00000006542)	ETNK1 (ENSKMAG00000006614)	pyroxd1 (ENSKMAG00000006649)	ENSKMAG00000006702	ENSKMAG00000006746	slco1d1 (ENSKMAG00000006888)	ENSKMAG00000007123	SLC2A13 (ENSKMAG00000007951)	ABCD2 (ENSKMAG00000007990) ##22	ENSKMAG00000008077	CPNE8 (ENSKMAG00000008347)	alg10 (ENSKMAG00000008444)	tprkb (ENSKMAG00000008458)	ENSKMAG00000008493	trmu (ENSKMAG00000008516)	ENSKMAG00000008576	GRAMD4 (ENSKMAG00000008634)	ENSKMAG00000008721	cerk (ENSKMAG00000008759)
Oryzias	ANCESTRAL SPECIES	20	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Oryzias_b	ANCESTRAL SPECIES	19													ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Indian medaka	MODERN SPECIES	2	podxl (ENSOMEG00000016610)	nfybb (ENSOMEG00000016595)	chst11 (ENSOMEG00000016562)	SLC41A2 (ENSOMEG00000016519)	nopchap1 (ENSOMEG00000016375)	ALDH1L2 (ENSOMEG00000016356)	ENSOMEG00000016310	samm50l (ENSOMEG00000016298)	scube1 (ENSOMEG00000016236)	MPPED1 (ENSOMEG00000016130)	ENSOMEG00000016095	ENSOMEG00000016081	slco1d1 (ENSOMEG00000016061)	ENSOMEG00000016003	SLC2A13 (ENSOMEG00000015929)	ABCD2 (ENSOMEG00000015878) ##22	ENSOMEG00000015812	CPNE8 (ENSOMEG00000015677)	alg10 (ENSOMEG00000015598)	tprkb (ENSOMEG00000015585)	ENSOMEG00000015563	trmu (ENSOMEG00000015541)	ENSOMEG00000015518	ENSOMEG00000015504	ENSOMEG00000015495	ENSOMEG00000015478	GRAMD4 (ENSOMEG00000015451)	cerk (ENSOMEG00000015387)	tbc1d22a (ENSOMEG00000000906)	ENSOMEG00000015317	tafa5a (ENSOMEG00000015288)
Javanese ricefish	MODERN SPECIES	8	GPBP1L1 (ENSOJAG00000010166)	TMEM69 (ENSOJAG00000010273)	IPP (ENSOJAG00000010283)	PIK3R3 (ENSOJAG00000010407)	SGIP1 (ENSOJAG00000010424)	ENSOJAG00000010437	mier1b (ENSOJAG00000010471)	slc35d1b (ENSOJAG00000010720)	ENSOJAG00000010738	hsd17b7 (ENSOJAG00000010747)	DDR2 (ENSOJAG00000010795)	ENSOJAG00000011342	rgs5b (ENSOJAG00000011347)	ENSOJAG00000011367	SLC2A13 (ENSOJAG00000011394)	ABCD2 (ENSOJAG00000011409) ##22	ENSOJAG00000012704	ENSOJAG00000012747	rgs18 (ENSOJAG00000012759)	RGS1 (ENSOJAG00000012769)	rgs13 (ENSOJAG00000012773)	RGS2 (ENSOJAG00000012784)	ro60 (ENSOJAG00000012838)	cdc73 (ENSOJAG00000012923)	ENSOJAG00000013018	ENSOJAG00000013024	ENSOJAG00000013028	SLC25A30 (ENSOJAG00000013071)	ENSOJAG00000013389	EDNRB (ENSOJAG00000013393)	ENSOJAG00000013408
Oryzias_a	ANCESTRAL SPECIES	125													ENSGT00940000163235.E.l	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b.d	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b
Japanese Medaka HdrR	MODERN SPECIES	15	pyroxd1 (ENSORLG00000008764)	ENSORLG00000008741	ENSORLG00000008736	ENSORLG00000024070	ENSORLG00000030319	ENSORLG00000027768	ENSORLG00000026492	ENSORLG00000025555	ENSORLG00000030161	ENSORLG00000029706	ENSORLG00000018665	ENSORLG00000028780	ENSORLG00000026977	ENSORLG00000029945	SLC2A13 (ENSORLG00000022973)	ABCD2 (ENSORLG00000008635) ##22	ENSORLG00000008604	CPNE8 (ENSORLG00000019057)	ENSORLG00000025436	alg10 (ENSORLG00000019038)	tprkb (ENSORLG00000028705)	ENSORLG00000024885	trmu (ENSORLG00000019015)	ENSORLG00000018319	ENSORLG00000025483	GRAMD4 (ENSORLG00000024702)
Chinese medaka	MODERN SPECIES	4675																ENSOSIG00000011903 ##22
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Zig-zag eel	MODERN SPECIES	15	ENSMAMG00000001926	arl1 (ENSMAMG00000001968)	ENSMAMG00000002063	SLC5A8 (ENSMAMG00000002374)	lyrm5a (ENSMAMG00000002406)	DNAI7 (ENSMAMG00000002418)	SOX5 (ENSMAMG00000002680)	ETNK1 (ENSMAMG00000002735)	ENSMAMG00000002758	ENSMAMG00000002815	ENSMAMG00000002843	ENSMAMG00000003635	ENSMAMG00000003948	SLC2A13 (ENSMAMG00000004487)	ENSMAMG00000024400	ABCD2 (ENSMAMG00000004520) ##22	ENSMAMG00000004560	CPNE8 (ENSMAMG00000004654)	alg10 (ENSMAMG00000028511)	tprkb (ENSMAMG00000004680)	ENSMAMG00000004691	trmu (ENSMAMG00000004717)	ENSMAMG00000004751	GRAMD4 (ENSMAMG00000005006)	cerk (ENSMAMG00000005044)	tbc1d22a (ENSMAMG00000005069)	tafa5a (ENSMAMG00000005139)	BRD1 (ENSMAMG00000005169)	zbed4 (ENSMAMG00000027285)	alg12 (ENSMAMG00000005249)	creld2 (ENSMAMG00000005260)
Anabantoidei	ANCESTRAL SPECIES	26	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Siamese fighting fish	MODERN SPECIES	20	ENSBSLG00000009697	ENSBSLG00000009352	ENSBSLG00000009343	ENSBSLG00000009332	ENSBSLG00000009323	ENSBSLG00000009317	ENSBSLG00000009308	ENSBSLG00000009273	ENSBSLG00000009222	ENSBSLG00000009208	ENSBSLG00000009196	ENSBSLG00000009190	ENSBSLG00000009184	SLC2A13 (ENSBSLG00000008972)	ENSBSLG00000008921	ABCD2 (ENSBSLG00000008279) ##22	ENSBSLG00000015569	CPNE8 (ENSBSLG00000015232)	alg10 (ENSBSLG00000014986)	tprkb (ENSBSLG00000014979)	ENSBSLG00000014972	trmu (ENSBSLG00000014929)	CELSR1 (ENSBSLG00000014572)	GRAMD4 (ENSBSLG00000014460)	cerk (ENSBSLG00000014392)	tbc1d22a (ENSBSLG00000014299)	tafa5a (ENSBSLG00000014277)	BRD1 (ENSBSLG00000014205)	zbed4 (ENSBSLG00000014201)	alg12 (ENSBSLG00000014173)	creld2 (ENSBSLG00000014133)
Climbing perch	MODERN SPECIES	14	ENSATEG00000009840	ENSATEG00000027329	ENSATEG00000009816	CDPF1 (ENSATEG00000027046)	pparaa (ENSATEG00000009775)	ENSATEG00000009746	atxn10 (ENSATEG00000009733)	ENSATEG00000009716	ENSATEG00000009638	ENSATEG00000009610	ENSATEG00000009044	ENSATEG00000008733	ENSATEG00000008416	SLC2A13 (ENSATEG00000008362)	ENSATEG00000008344	ABCD2 (ENSATEG00000008297) ##22	ENSATEG00000008057	CPNE8 (ENSATEG00000007900)	alg10 (ENSATEG00000007882)	tprkb (ENSATEG00000025668)	ENSATEG00000007851	trmu (ENSATEG00000007814)	ENSATEG00000007637	GRAMD4 (ENSATEG00000007527)	cerk (ENSATEG00000007510)	tbc1d22a (ENSATEG00000007447)	tafa5a (ENSATEG00000030034)	BRD1 (ENSATEG00000007371)	zbed4 (ENSATEG00000007363)	alg12 (ENSATEG00000007299)	creld2 (ENSATEG00000007257)
Carangaria	ANCESTRAL SPECIES	22	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Carangaria_A	ANCESTRAL SPECIES	21	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Seriola	ANCESTRAL SPECIES	9	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Yellowtail amberjack	MODERN SPECIES	3050	arl1 (ENSSLDG00000012946)	UTP20 (ENSSLDG00000012844)	SLC5A8 (ENSSLDG00000012789)	lyrm5a (ENSSLDG00000012767)	dnai7 (ENSSLDG00000012699)	lrmp (ENSSLDG00000012643)	bcat1 (ENSSLDG00000012613)	sox5 (ENSSLDG00000012578)	ETNK1 (ENSSLDG00000012504)	pyroxd1 (ENSSLDG00000012448)	IAPP (ENSSLDG00000012420)	ENSSLDG00000012343	slco1d1 (ENSSLDG00000012307)	ENSSLDG00000012231	SLC2A13 (ENSSLDG00000012186)	ABCD2 (ENSSLDG00000012149) ##22	ENSSLDG00000012065	CPNE8 (ENSSLDG00000011789)	alg10 (ENSSLDG00000011740)	tprkb (ENSSLDG00000011719)	ENSSLDG00000011708	trmu (ENSSLDG00000011684)	ENSSLDG00000011496	GRAMD4 (ENSSLDG00000011346)	cerk (ENSSLDG00000011307)	tbc1d22a (ENSSLDG00000011267)	tafa5a (ENSSLDG00000011213)
Greater amberjack	MODERN SPECIES	60	UTP20 (ENSSDUG00000013730)	SLC5A8 (ENSSDUG00000013665)	lyrm5a (ENSSDUG00000013651)	dnai7 (ENSSDUG00000013581)	lrmp (ENSSDUG00000013364)	bcat1 (ENSSDUG00000013327)	sox5 (ENSSDUG00000013290)	ETNK1 (ENSSDUG00000013270)	pyroxd1 (ENSSDUG00000013246)	ENSSDUG00000013234	ENSSDUG00000013167	slco1d1 (ENSSDUG00000012895)	ENSSDUG00000012383	SLC2A13 (ENSSDUG00000012309)	ENSSDUG00000012279	ABCD2 (ENSSDUG00000012258) ##22	ENSSDUG00000012071	CPNE8 (ENSSDUG00000012015)	alg10 (ENSSDUG00000012003)	tprkb (ENSSDUG00000011990)	ENSSDUG00000011978	trmu (ENSSDUG00000011913)	ENSSDUG00000011811	GRAMD4 (ENSSDUG00000011780)	cerk (ENSSDUG00000011763)	tbc1d22a (ENSSDUG00000011710)	tafa5a (ENSSDUG00000011688)	ENSSDUG00000011647	BRD1 (ENSSDUG00000011602)	zbed4 (ENSSDUG00000011586)	alg12 (ENSSDUG00000011539)
Barramundi perch	MODERN SPECIES	176	UTP20 (ENSLCAG00010014154)	SLC5A8 (ENSLCAG00010014378)	SLC5A8 (ENSLCAG00010014461)	lyrm5a (ENSLCAG00010014469)	dnai7 (ENSLCAG00010014477)	IRAG2 (ENSLCAG00010014484)	bcat1 (ENSLCAG00010014501)	sox5 (ENSLCAG00010014526)	ETNK1 (ENSLCAG00010014582)	pyroxd1 (ENSLCAG00010014591)	IAPP (ENSLCAG00010014595)	ENSLCAG00010014606	slco1d1 (ENSLCAG00010014632)	ENSLCAG00010014668	SLC2A13 (ENSLCAG00010014730)	ABCD2 (ENSLCAG00010014761) ##22	ENSLCAG00010014847	CPNE8 (ENSLCAG00010015101)	alg10 (ENSLCAG00010015152)	tprkb (ENSLCAG00010015156)	ENSLCAG00010015161	trmu (ENSLCAG00010015171)	ENSLCAG00010015266	GRAMD4 (ENSLCAG00010015565)	ENSLCAG00010015587	ENSLCAG00010015591	tbc1d22a (ENSLCAG00010015633)
Pleuronectoidei	ANCESTRAL SPECIES	16	ENSGT00900000143486	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Tongue sole	MODERN SPECIES	18	ENSCSEG00000014808	ENSCSEG00000014803	UTP20 (ENSCSEG00000014760)	SLC5A8 (ENSCSEG00000014725)	lyrm5a (ENSCSEG00000014721)	dnai7 (ENSCSEG00000014711)	lrmp (ENSCSEG00000014668)	sox5 (ENSCSEG00000014640)	ETNK1 (ENSCSEG00000014633)	pyroxd1 (ENSCSEG00000014598)	IAPP (ENSCSEG00000014586)	ENSCSEG00000014037	slco1d1 (ENSCSEG00000013991)	ENSCSEG00000012612	SLC2A13 (ENSCSEG00000012482)	ABCD2 (ENSCSEG00000012469) ##22	ENSCSEG00000012446	CPNE8 (ENSCSEG00000012416)	alg10 (ENSCSEG00000012410)	tprkb (ENSCSEG00000012408)	ENSCSEG00000012403	trmu (ENSCSEG00000012382)	CELSR1 (ENSCSEG00000012347)	GRAMD4 (ENSCSEG00000012292)	cerk (ENSCSEG00000012271)	tbc1d22a (ENSCSEG00000012264)	tafa5a (ENSCSEG00000012256)	BRD1 (ENSCSEG00000012204)	zbed4 (ENSCSEG00000012190)	alg12 (ENSCSEG00000012179)	creld2 (ENSCSEG00000012165)
Turbot	MODERN SPECIES	11	ENSSMAG00000016385	arl1 (ENSSMAG00000016416)	ENSSMAG00000016582	lyrm5a (ENSSMAG00000033642)	dnai7 (ENSSMAG00000016656)	ENSSMAG00000016668	bcat1 (ENSSMAG00000017005)	SOX5 (ENSSMAG00000017027)	ETNK1 (ENSSMAG00000017229)	ENSSMAG00000017259	ENSSMAG00000017305	ENSSMAG00000017312	ENSSMAG00000017328	ENSSMAG00000017340	ENSSMAG00000018108	ENSSMAG00000018129 ##22	ENSSMAG00000018142	ENSSMAG00000033445	ENSSMAG00000018150	ENSSMAG00000018174	ENSSMAG00000018203	cdpf1 (ENSSMAG00000025682)	pparaa (ENSSMAG00000018220)	ENSSMAG00000018304	atxn10 (ENSSMAG00000018295)	ENSSMAG00000018336	ENSSMAG00000018448	ENSSMAG00000018478	ENSSMAG00000018491	ENSSMAG00000018634	ENSSMAG00000018943
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Fugu	MODERN SPECIES	9	ENSTRUG00000006876	si:cabz01085950.1 (ENSTRUG00000023011)	ENSTRUG00000006575	DENND11 (ENSTRUG00000006400)	arl1 (ENSTRUG00000006254)	UTP20 (ENSTRUG00000005849)	slc5a8 (ENSTRUG00000004999)	ENSTRUG00000030144	lyrm5a (ENSTRUG00000004631)	dnai7 (ENSTRUG00000004184)	lrmp (ENSTRUG00000027129)	bcat1 (ENSTRUG00000003519)	ENSTRUG00000032102	SLC2A13 (ENSTRUG00000006207)	ENSTRUG00000022842	ABCD2 (ENSTRUG00000006477) ##22	ENSTRUG00000006777	CPNE8 (ENSTRUG00000007481)	ENSTRUG00000003403	GRAMD4 (ENSTRUG00000000609)	CELSR1 (ENSTRUG00000000706)	trmu (ENSTRUG00000001231)	cerk (ENSTRUG00000018590)	tbc1d22a (ENSTRUG00000000990)	tafa5a (ENSTRUG00000026206)	ENSTRUG00000031802	BRD1 (ENSTRUG00000001000)	zbed4 (ENSTRUG00000001221)	alg12 (ENSTRUG00000001245)	creld2 (ENSTRUG00000001351)	pim3 (ENSTRUG00000001489)
Tetraodon	MODERN SPECIES	11	SLC5A8 (ENSTNIG00000006923)	ENSTNIG00000001020	lyrm5a (ENSTNIG00000006924)	dnai7 (ENSTNIG00000006925)	IRAG2 (ENSTNIG00000006926)	bcat1 (ENSTNIG00000006927)	sox5 (ENSTNIG00000006928)	ETNK1 (ENSTNIG00000002740)	pyroxd1 (ENSTNIG00000002741)	ENSTNIG00000000409	IAPP (ENSTNIG00000002742)	slco1d1 (ENSTNIG00000002743)	ENSTNIG00000010493	SLC2A13 (ENSTNIG00000010492)	ENSTNIG00000010491	ABCD2 (ENSTNIG00000010490) ##22	ENSTNIG00000010489	CPNE8 (ENSTNIG00000010488)	alg10 (ENSTNIG00000010487)	tprkb (ENSTNIG00000010486)	ENSTNIG00000010485	trmu (ENSTNIG00000010484)	CELSR1 (ENSTNIG00000010483)	GRAMD4 (ENSTNIG00000010482)	cerk (ENSTNIG00000010481)	tbc1d22a (ENSTNIG00000010480)	tafa5a (ENSTNIG00000001252)	BRD1 (ENSTNIG00000006776)	zbed4 (ENSTNIG00000006775)	alg12 (ENSTNIG00000006774)	creld2 (ENSTNIG00000006773)
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Ballan wrasse	MODERN SPECIES	120	UTP20 (ENSLBEG00000000781)	SLC5A8 (ENSLBEG00000000701)	SLC5A8 (ENSLBEG00000000630)	lyrm5a (ENSLBEG00000000615)	dnai7 (ENSLBEG00000000589)	lrmp (ENSLBEG00000000478)	bcat1 (ENSLBEG00000000407)	sox5 (ENSLBEG00000000367)	ETNK1 (ENSLBEG00000000353)	pyroxd1 (ENSLBEG00000000297)	IAPP (ENSLBEG00000000289)	ENSLBEG00000000277	slco1d1 (ENSLBEG00000000222)	ENSLBEG00000000079	SLC2A13 (ENSLBEG00000000058)	ABCD2 (ENSLBEG00000000047) ##22	ENSLBEG00000000034	CPNE8 (ENSLBEG00000028637)	phtf2 (ENSLBEG00000028635)	TMEM60 (ENSLBEG00000028634)	RSBN1L (ENSLBEG00000028632)	ENSLBEG00000028630	zgc:113263 (ENSLBEG00000028629)	ENSLBEG00000028628	rassf8b (ENSLBEG00000028625)	pkp2 (ENSLBEG00000028621)	nudt4b (ENSLBEG00000028620)	ube2nb (ENSLBEG00000028619)	mrpl42 (ENSLBEG00000028618)	pwp1 (ENSLBEG00000028616)	ANO6 (ENSLBEG00000028615)
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Gilthead seabream	MODERN SPECIES	5	ENSSAUG00010025457	mapk11 (ENSSAUG00010025462)	mapk12b (ENSSAUG00010025495)	ENSSAUG00010025530	rpap3 (ENSSAUG00010025534)	atp23 (ENSSAUG00010025537)	lrig3 (ENSSAUG00010025548)	zgc:165507 (ENSSAUG00010025568)	ENSSAUG00010025570	si:ch73-252i11.1 (ENSSAUG00010025572)	SYN3 (ENSSAUG00010025580)	TIMP3 (ENSSAUG00010025611)	si:cabz01085950.1 (ENSSAUG00010025612)	ENSSAUG00010025614	SLC2A13 (ENSSAUG00010025615)	ABCD2 (ENSSAUG00010025618) ##22	ENSSAUG00010025673	CPNE8 (ENSSAUG00010026322)	alg10 (ENSSAUG00010026323)	tprkb (ENSSAUG00010026325)	ENSSAUG00010026326	trmu (ENSSAUG00010026328)	CELSR1 (ENSSAUG00010026346)	ENSSAUG00010001442	GRAMD4 (ENSSAUG00010001471)	cerk (ENSSAUG00010001812)	tbc1d22a (ENSSAUG00010001869)	ENSSAUG00010002100	tafa5a (ENSSAUG00010002104)	ENSSAUG00010002109	BRD1 (ENSSAUG00010002114)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	22	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00940000171055	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
European seabass	MODERN SPECIES	23	ENSDLAG00005022870	ENSDLAG00005022878	ETFRF1 (ENSDLAG00005027190)	dnai7 (ENSDLAG00005022908)	ENSDLAG00005022917	bcat1 (ENSDLAG00005022939)	SOX5 (ENSDLAG00005023258)	ETNK1 (ENSDLAG00005030352)	ENSDLAG00005002319	ENSDLAG00005002343	ENSDLAG00005002385	ENSDLAG00005003444	ENSDLAG00005003828	SLC2A13 (ENSDLAG00005031894)	ENSDLAG00005004415	ABCD2 (ENSDLAG00005004473) ##22	ENSDLAG00005004829	CPNE8 (ENSDLAG00005028386)	alg10 (ENSDLAG00005031459)	trmu (ENSDLAG00005009386)	ENSDLAG00005009488	GRAMD4 (ENSDLAG00005010118)	cerk (ENSDLAG00005010374)	tbc1d22a (ENSDLAG00005010430)	tafa5a (ENSDLAG00005031832)	BRD1 (ENSDLAG00005010809)	zbed4 (ENSDLAG00005010834)	alg12 (ENSDLAG00005010839)	creld2 (ENSDLAG00005010845)	ENSDLAG00005010900	ENSDLAG00005030239
Large yellow croaker	MODERN SPECIES	491	UTP20 (ENSLCRG00005023766)	SLC5A8 (ENSLCRG00005023761)	lyrm5a (ENSLCRG00005023757)	dnai7 (ENSLCRG00005023756)	lrmp (ENSLCRG00005023754)	bcat1 (ENSLCRG00005023751)	sox5 (ENSLCRG00005023745)	ETNK1 (ENSLCRG00005023741)	pyroxd1 (ENSLCRG00005023740)	IAPP (ENSLCRG00005023738)	ENSLCRG00005023736	slco1d1 (ENSLCRG00005023731)	ENSLCRG00005023730	SLC2A13 (ENSLCRG00005023729)	ENSLCRG00005023728	ABCD2 (ENSLCRG00005023726) ##22	ENSLCRG00005023643	CPNE8 (ENSLCRG00005023605)	alg10 (ENSLCRG00005023599)	tprkb (ENSLCRG00005023598)	ENSLCRG00005023596	trmu (ENSLCRG00005023594)	ENSLCRG00005023429	GRAMD4 (ENSLCRG00005023424)	cerk (ENSLCRG00005023421)	tbc1d22a (ENSLCRG00005023254)	tafa5a (ENSLCRG00005023247)	BRD1 (ENSLCRG00005023246)	zbed4 (ENSLCRG00005023245)	alg12 (ENSLCRG00005023244)	creld2 (ENSLCRG00005023243)
Perciformes	ANCESTRAL SPECIES	18	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Stickleback	MODERN SPECIES	3	ENSGACG00000019080	ENSGACG00000019079	bcat1 (ENSGACG00000019077)	sox5 (ENSGACG00000019075)	ETNK1 (ENSGACG00000019071)	pyroxd1 (ENSGACG00000019068)	ENSGACG00000019067	slco1d1 (ENSGACG00000019066)	ENSGACG00000019064	ENSGACG00000019063	ENSGACG00000019061	ENSGACG00000019056	ENSGACG00000019053	spg4 (ENSGACG00000019037)	SLC2A13 (ENSGACG00000019036)	ABCD2 (ENSGACG00000019034) ##22	ENSGACG00000019033	CPNE8 (ENSGACG00000019027)	alg10 (ENSGACG00000019026)	ENSGACG00000019025	trmu (ENSGACG00000019024)	CELSR1 (ENSGACG00000019020)	GRAMD4 (ENSGACG00000019018)	ENSGACG00000019017	cerk (ENSGACG00000019016)	tbc1d22a (ENSGACG00000019014)	tafa5a (ENSGACG00000019011)	BRD1 (ENSGACG00000019009)	zbed4 (ENSGACG00000019008)	alg12 (ENSGACG00000019007)	creld2 (ENSGACG00000019005)
Lumpfish	MODERN SPECIES	15	ucmaa (ENSCLMG00005021688)	UTP20 (ENSCLMG00005021689)	SLC5A8 (ENSCLMG00005021698)	lyrm5a (ENSCLMG00005021718)	dnai7 (ENSCLMG00005021720)	lrmp (ENSCLMG00005021723)	bcat1 (ENSCLMG00005021731)	sox5 (ENSCLMG00005021743)	ETNK1 (ENSCLMG00005021786)	pyroxd1 (ENSCLMG00005021788)	ENSCLMG00005021792	ENSCLMG00005021793	slco1d1 (ENSCLMG00005021796)	ENSCLMG00005021842	SLC2A13 (ENSCLMG00005022294)	ABCD2 (ENSCLMG00005022295) ##22	ENSCLMG00005022304	CPNE8 (ENSCLMG00005022401)	alg10 (ENSCLMG00005022402)	tprkb (ENSCLMG00005022404)	trmu (ENSCLMG00005022405)	CELSR1 (ENSCLMG00005022435)	GRAMD4 (ENSCLMG00005022515)	cerk (ENSCLMG00005022535)	tbc1d22a (ENSCLMG00005022605)	tafa5a (ENSCLMG00005022644)	BRD1 (ENSCLMG00005022646)	zbed4 (ENSCLMG00005010528)	creld2 (ENSCLMG00005010537)	pim3 (ENSCLMG00005010712)	ENSCLMG00005010713
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b	ENSGT00940000165245	ENSGT00940000155870.a.a	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.b	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00940000165678.b	ENSGT00390000014323	ENSGT00940000159839.d.a.b	ENSGT00390000010968.b	ENSGT00940000156976.fb	ENSGT00940000159840.h	ENSGT00940000160682.b.c.b	ENSGT00940000157236.i	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Pike perch	MODERN SPECIES	20	UTP20 (ENSSLUG00000012172)	SLC5A8 (ENSSLUG00000012038)	lyrm5a (ENSSLUG00000012027)	dnai7 (ENSSLUG00000012016)	lrmp (ENSSLUG00000011976)	bcat1 (ENSSLUG00000011658)	sox5 (ENSSLUG00000009896)	ETNK1 (ENSSLUG00000009760)	pyroxd1 (ENSSLUG00000009687)	ENSSLUG00000009664	ENSSLUG00000009601	slco1d1 (ENSSLUG00000009526)	ENSSLUG00000008732	ENSSLUG00000008268	SLC2A13 (ENSSLUG00000008110)	ABCD2 (ENSSLUG00000007974) ##22	ENSSLUG00000006225	CPNE8 (ENSSLUG00000006049)
Channel bull blenny	MODERN SPECIES	15	DENND11 (ENSCGOG00000016445)	arl1 (ENSCGOG00000016462)	SLC5A8 (ENSCGOG00000016582)	lyrm5a (ENSCGOG00000016588)	dnai7 (ENSCGOG00000016597)	lrmp (ENSCGOG00000016606)	bcat1 (ENSCGOG00000016629)	sox5 (ENSCGOG00000016671)	ETNK1 (ENSCGOG00000017514)	pyroxd1 (ENSCGOG00000017550)	IAPP (ENSCGOG00000017604)	ENSCGOG00000017622	slco1d1 (ENSCGOG00000017919)	ENSCGOG00000017956	SLC2A13 (ENSCGOG00000018121)	ABCD2 (ENSCGOG00000018161) ##22	ENSCGOG00000018310	CPNE8 (ENSCGOG00000020049)	alg10 (ENSCGOG00000020061)	tprkb (ENSCGOG00000020062)	ENSCGOG00000020065	trmu (ENSCGOG00000020072)	CELSR1 (ENSCGOG00000020265)	GRAMD4 (ENSCGOG00000021007)	cerk (ENSCGOG00000021034)	tbc1d22a (ENSCGOG00000021065)	tafa5a (ENSCGOG00000021546)	BRD1 (ENSCGOG00000021550)	zbed4 (ENSCGOG00000021562)	alg12 (ENSCGOG00000021563)	creld2 (ENSCGOG00000021566)
Osteoglossiformes	ANCESTRAL SPECIES	302												ENSGT00940000164528	ENSGT00940000165245	ENSGT00940000158267	ENSGT00940000155870.a.a.a.a	ENSGT00950000182955.a.b.b ##22	ENSGT00940000155323.a.j	ENSGT00940000159679.a	ENSGT00390000012942	ENSGT00940000159839.b	ENSGT00390000010968.a	ENSGT00940000156976.gb	ENSGT00940000160682.b.c.a	ENSGT00940000157236.h	ENSGT00940000161365.d	ENSGT00950000183090.B	ENSGT00940000160071.e	ENSGT00940000153394.c.b.b.b	ENSGT00940000162605.c
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	11	ENSSFOG00015023606	ENSSFOG00015027013	ADORA1 (ENSSFOG00015023604)	cpne5b (ENSSFOG00015023601)	KIF21B (ENSSFOG00015023566)	LHFPL5 (ENSSFOG00015023552)	srpk1b (ENSSFOG00015023536)	MAPK14 (ENSSFOG00015023518)	tmem167b (ENSSFOG00015028856)	GPR25 (ENSSFOG00015023506)	inavab (ENSSFOG00015023494)	ENSSFOG00015028066	ENSSFOG00015015939	lrrk2 (ENSSFOG00015015869)	SLC2A13 (ENSSFOG00015015834)	ABCD2 (ENSSFOG00015015804) ##22	KIF21A (ENSSFOG00015015586)	ENSSFOG00015015520	CPNE8 (ENSSFOG00015011574)	tprkb (ENSSFOG00015011656)	ENSSFOG00015011682	ccnd1 (ENSSFOG00015011800)	fgf19 (ENSSFOG00015011821)	fgf3 (ENSSFOG00015011896)	ENSSFOG00015011921	ano1a (ENSSFOG00015011940)	ENSSFOG00015011991	SPI1 (ENSSFOG00015012011)	mybpc3 (ENSSFOG00015012236)	MADD (ENSSFOG00015013242)	nr1h3 (ENSSFOG00015013662)
Asian bonytongue	MODERN SPECIES	13	nr2c1 (ENSSFOG00015021667)	fgd6 (ENSSFOG00015021648)	vezt (ENSSFOG00015021632)	ENSSFOG00015031614	metap2b (ENSSFOG00015021604)	usp44 (ENSSFOG00015021581)	ntn4 (ENSSFOG00015021542)	snrpf (ENSSFOG00015021523)	ENSSFOG00015021514	slc23a4 (ENSSFOG00015021504)	ENSSFOG00015029781	BICD1 (ENSSFOG00015021486)	ENSSFOG00015021427	dennd11 (ENSSFOG00015025202)	SLC2A13 (ENSSFOG00015021390)	ABCD2 (ENSSFOG00015027577) ##22	ENSSFOG00015021263	CPNE8 (ENSSFOG00015021205)	alg10 (ENSSFOG00015021190)	ENSSFOG00015020747	gtse1 (ENSSFOG00015020684)	ENSSFOG00015031219	trmu (ENSSFOG00015020664)	CELSR1 (ENSSFOG00015020621)	GRAMD4 (ENSSFOG00015020564)	cerk (ENSSFOG00015020541)	tbc1d22a (ENSSFOG00015020457)	TAFA5 (ENSSFOG00015020441)	BRD1 (ENSSFOG00015020416)	zbed4 (ENSSFOG00015020407)	creld2 (ENSSFOG00015020379)
P. kingsleyae	MODERN SPECIES	253								ENSPKIG00000012790	ENSPKIG00000012926	ENSPKIG00000013015	ENSPKIG00000013038	ENSPKIG00000013056	ENSPKIG00000013087	lrrk2 (ENSPKIG00000013223)	SLC2A13 (ENSPKIG00000013437)	ABCD2 (ENSPKIG00000013475) ##22	KIF21A (ENSPKIG00000013663)	CPNE8 (ENSPKIG00000014095)	tprkb (ENSPKIG00000014178)	CELSR1 (ENSPKIG00000014221)	ENSPKIG00000014314	GRAMD4 (ENSPKIG00000014442)	CERK (ENSPKIG00000014575)	TAFA5 (ENSPKIG00000014641)	BRD1 (ENSPKIG00000014688)	zbed4 (ENSPKIG00000014756)	alg12 (ENSPKIG00000014771)	creld2 (ENSPKIG00000014813)	pim3 (ENSPKIG00000014884)	ENSPKIG00000014924	acot19 (ENSPKIG00000014971)
Spotted gar	MODERN SPECIES	674	ENSLOCG00000017911	cnot4b (ENSLOCG00000016126)	tmem178ba (ENSLOCG00000016125)	mrps33 (ENSLOCG00000016124)	braf (ENSLOCG00000016118)	large1 (ENSLOCG00000016113)	ENSLOCG00000016111	ENSLOCG00000017910	KCNA1 (ENSLOCG00000017909)	ENSLOCG00000016110	ENSLOCG00000016108	ENSLOCG00000016106	ENSLOCG00000016103	lrrk2 (ENSLOCG00000016102)	slc2a13b (ENSLOCG00000016098)	ABCD2 (ENSLOCG00000016096) ##22	KIF21A (ENSLOCG00000016087)	CPNE8 (ENSLOCG00000016081)	alg10 (ENSLOCG00000016079)	tprkb (ENSLOCG00000016078)	GTSE1 (ENSLOCG00000016073)	ENSLOCG00000016071	trmu (ENSLOCG00000016066)	CELSR1 (ENSLOCG00000016061)	GRAMD4 (ENSLOCG00000016055)	cerk (ENSLOCG00000016052)	tbc1d22a (ENSLOCG00000016050)	tafa5a (ENSLOCG00000016048)	brd1b (ENSLOCG00000016047)	zbed4 (ENSLOCG00000017908)	alg12 (ENSLOCG00000016045)
Reedfish	MODERN SPECIES		ENSECRG00000001450	slc13a1 (ENSECRG00000001415)	CADPS2 (ENSECRG00000001395)	fezf1 (ENSECRG00000001380)	aass (ENSECRG00000001331)	PTPRZ1 (ENSECRG00000001283)	dldh (ENSECRG00000001227)	ENSECRG00000001203	ENSECRG00000001172	lamb4 (ENSECRG00000001107)	ENSECRG00000001047	ENSECRG00000000951	ENSECRG00000000713	LRRK2 (ENSECRG00000000605)	slc2a13b (ENSECRG00000000553)	ABCD2 (ENSECRG00000000532) ##22	ENSECRG00000000525	KIF21A (ENSECRG00000000475)	ENSECRG00000000449	ENSECRG00000000441	CPNE8 (ENSECRG00000000429)	ENSECRG00000000398	ENSECRG00000000395	alg10 (ENSECRG00000005043)	tprkb (ENSECRG00000005034)	ENSECRG00000005014	ENSECRG00000004998	trmu (ENSECRG00000004984)	CELSR1 (ENSECRG00000004960)	GRAMD4 (ENSECRG00000004937)	cerk (ENSECRG00000004925)
Elephant shark	MODERN SPECIES	1691															ENSCMIG00000007690	ABCD2 (ENSCMIG00000007693) ##22	ENSCMIG00000007891	CPNE8 (ENSCMIG00000008508)	ENSCMIG00000008596	alg10 (ENSCMIG00000008599)	tprkb (ENSCMIG00000008600)	ENSCMIG00000008608	trmu (ENSCMIG00000008614)	ENSCMIG00000008641
Ciona	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b #22
Ciona intestinalis	MODERN SPECIES	6	ENSCING00000017950	ENSCING00000004336	ENSCING00000020059	ENSCING00000004329	ENSCING00000020080	ENSCING00000011368	ENSCING00000011367	ENSCING00000004323	ENSCING00000007197	ENSCING00000022599	ENSCING00000010598	ENSCING00000021814	ENSCING00000023407	ENSCING00000018417	ENSCING00000011366	ENSCING00000007200 #22	ENSCING00000011365	ENSCING00000011364	ENSCING00000023484	ENSCING00000011363	ENSCING00000007202	ENSCING00000007203	ENSCING00000024988	ENSCING00000018195	ENSCING00000022170	ENSCING00000011369	ENSCING00000023540	ENSCING00000018628	ENSCING00000020011	ENSCING00000011370	ENSCING00000018075
Ciona savignyi	MODERN SPECIES	169									ENSCSAVG00000002457	ENSCSAVG00000002460	ENSCSAVG00000002462	ENSCSAVG00000002466	ENSCSAVG00000002521	ENSCSAVG00000002526	ENSCSAVG00000002529	ENSCSAVG00000002539 #22	ENSCSAVG00000002971	ENSCSAVG00000002979	ENSCSAVG00000002991	ENSCSAVG00000003016	ENSCSAVG00000003069	ENSCSAVG00000003091	ENSCSAVG00000003098	ENSCSAVG00000003102	ENSCSAVG00000003772
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00950000182955.a.b #22
Caenorhabditis elegans	MODERN SPECIES	3	elo-2 (WBGene00001240)	F11E6.6 (WBGene00008709)	F11E6.10 (WBGene00008713)	rif-1.1 (WBGene00008710)	F11E6.8 (WBGene00008711)	F11E6.11 (WBGene00023501)	F08A7.1 (WBGene00045013)	C06A12.19 (WBGene00255702)	C06A12.8 (WBGene00007359)	gcy-27 (WBGene00001550)	lact-6 (WBGene00007358)	C06A12.3 (WBGene00007357)	npr-26 (WBGene00011372)	T02D1.9 (WBGene00138714)	T02D1.7 (WBGene00011373)	pmp-4 (WBGene00004061) #22	T02D1.4 (WBGene00011371)	sru-15 (WBGene00005678)	T02D1.8 (WBGene00011374)	C30H6.12 (WBGene00044238)	C30H6.8 (WBGene00007825)	dlat-2 (WBGene00007824)	C30H6.9 (WBGene00007826)	haf-1 (WBGene00001811)	C30H6.5 (WBGene00007823)	trh-1 (WBGene00007827)	zipt-17 (WBGene00006487)	clec-202 (WBGene00007822)	clec-199 (WBGene00007820)	clec-198 (WBGene00008203)	clec-197 (WBGene00008202)
Fruitfly	MODERN SPECIES	20	dati (FBgn0262636)	Hcf (FBgn0039904)	PMCA (FBgn0259214)	Rnf11 (FBgn0052850)	Zip102B (FBgn0039902)	Rad23 (FBgn0026777)	Syt7 (FBgn0039900)	NfI (FBgn0042696)	RhoGAP102A (FBgn0259216)	dpr7 (FBgn0053481)	CG1674 (FBgn0039897)	yellow-h (FBgn0039896)	CG31999 (FBgn0051999)	Crk (FBgn0024811)	CG31998 (FBgn0051998)	Abcd1 (FBgn0039890) #22	Arl4 (FBgn0039889)	CG33978 (FBgn0053978)	CG31997 (FBgn0051997)	CG32006 (FBgn0052006)	anne (FBgn0052000)	Ank (FBgn0011747)	pan (FBgn0085432)	RpS3A (FBgn0017545)	ci (FBgn0004859)	PlexB (FBgn0025740) #23	JYalpha (FBgn0267363)
Bilateria	DUPLICATION
Bilateria	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.a ##22
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.a ##22
Caenorhabditis elegans	DUPLICATION
Caenorhabditis elegans	MODERN SPECIES	1	malt-1 (WBGene00017702)	flcn-1 (WBGene00017699)	F22D3.4 (WBGene00017700)	B0252.1 (WBGene00015087)	B0252.5 (WBGene00015089)	B0252.11 (WBGene00305086)	B0252.8 (WBGene00044615)	cyn-10 (WBGene00000886)	asm-1 (WBGene00000211)	B0252.3 (WBGene00015088)	psmd-9 (WBGene00016623)	hrpl-1 (WBGene00016624)	C44B7.11 (WBGene00016631)	adal-1 (WBGene00016632)	acer-1 (WBGene00016630)	pmp-2 (WBGene00004059) ##22	pmp-1 (WBGene00004058) ##22	C44B7.7 (WBGene00016629)	slc-36.5 (WBGene00016628)	C44B7.5 (WBGene00016627)	clhm-1 (WBGene00016626)	aff-1 (WBGene00016625)	dnj-5 (WBGene00001023)	C04A2.15 (WBGene00206529)	tbc-6 (WBGene00015410)	egl-27 (WBGene00001194)	snt-1 (WBGene00004921)	F31E8.5 (WBGene00017955)	tab-1 (WBGene00006380)	F31E8.4 (WBGene00017954)	T13C2.2 (WBGene00020478)
Caenorhabditis elegans	MODERN SPECIES	1	flcn-1 (WBGene00017699)	F22D3.4 (WBGene00017700)	B0252.1 (WBGene00015087)	B0252.5 (WBGene00015089)	B0252.11 (WBGene00305086)	B0252.8 (WBGene00044615)	cyn-10 (WBGene00000886)	asm-1 (WBGene00000211)	B0252.3 (WBGene00015088)	psmd-9 (WBGene00016623)	hrpl-1 (WBGene00016624)	C44B7.11 (WBGene00016631)	adal-1 (WBGene00016632)	acer-1 (WBGene00016630)	pmp-2 (WBGene00004059) ##22	pmp-1 (WBGene00004058) ##22	C44B7.7 (WBGene00016629)	slc-36.5 (WBGene00016628)	C44B7.5 (WBGene00016627)	clhm-1 (WBGene00016626)	aff-1 (WBGene00016625)	dnj-5 (WBGene00001023)	C04A2.15 (WBGene00206529)	tbc-6 (WBGene00015410)	egl-27 (WBGene00001194)	snt-1 (WBGene00004921)	F31E8.5 (WBGene00017955)	tab-1 (WBGene00006380)	F31E8.4 (WBGene00017954)	T13C2.2 (WBGene00020478)	T13C2.3 (WBGene00020479)
Fruitfly	MODERN SPECIES	26	CG14229 (FBgn0031059)	Cdc42 (FBgn0010341)	Tcs4 (FBgn0031060)	CG14232 (FBgn0031061)	CG14230 (FBgn0031062)	meso18E (FBgn0040089)	CG12531 (FBgn0031064)	AP-1-2beta (FBgn0010380)	CG14234 (FBgn0031065)	COX6B (FBgn0031066)	CG18809 (FBgn0042132)	CG33932 (FBgn0066303)	Rpp20 (FBgn0066304)	parvin (FBgn0052528)	Alr (FBgn0031068)	Abcd3 (FBgn0031069) ##22	CG12702 (FBgn0031070)	zld (FBgn0259789)	SkpD (FBgn0026174)	SkpC (FBgn0026175)	SkpE (FBgn0031074)	pico (FBgn0261811)	Nup205 (FBgn0031078)	THADA (FBgn0031077)	Hers (FBgn0052529)	amn (FBgn0086782)	CG45486 (FBgn0267042)	CG45487 (FBgn0267043)	CG45488 (FBgn0267044)	CG45489 (FBgn0267045)	CG45490 (FBgn0267046)
Chordata	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.a ##22
Vertebrata	ANCESTRAL SPECIES	1157															ENSGT00390000012668	ENSGT00950000182955.a.a.a ##22
Gnathostomata	ANCESTRAL SPECIES		ENSGT00940000153846.a.a	ENSGT00950000183210	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000153190.A	ENSGT00940000164612	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000016735	ENSGT00390000000053	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00980000198918	ENSGT00940000157704	ENSGT00390000012596
Euteleostomi	ANCESTRAL SPECIES	14	ENSGT00940000153846.a.a	ENSGT00950000183210	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000153190.A	ENSGT00940000164612	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.a.a	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00980000198918
Sarcopterygii	ANCESTRAL SPECIES	17	ENSGT00940000153846.a.a	ENSGT00950000183210	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000153190.A	ENSGT00940000164612	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.a.a	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Tetrapoda	ANCESTRAL SPECIES	8	ENSGT00940000153846.a.a	ENSGT00950000183210	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Amniota	ANCESTRAL SPECIES	9	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Sauria	ANCESTRAL SPECIES	7	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Archelosauria	ANCESTRAL SPECIES	9	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Archosauria	ANCESTRAL SPECIES	11	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Aves	ANCESTRAL SPECIES	7	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Neognathae	ANCESTRAL SPECIES	8	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT01090000263431	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Anatidae	ANCESTRAL SPECIES	5	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Pink-footed goose	MODERN SPECIES	78	EVI5 (ENSABRG00000015035)	RPL5 (ENSABRG00000014991)	DIPK1A (ENSABRG00000014977)	MTF2 (ENSABRG00000014841)	TMED5 (ENSABRG00000014825)	CCDC18 (ENSABRG00000014813)	ENSABRG00000014805	DR1 (ENSABRG00000014802)	FNBP1L (ENSABRG00000014488)	BCAR3 (ENSABRG00000014355)	ENSABRG00000014342	GCLM (ENSABRG00000014339)	ENSABRG00000014331	ABCA4 (ENSABRG00000006282)	ARHGAP29 (ENSABRG00000005649)	ABCD3 (ENSABRG00000000778) ##22	F3 (ENSABRG00000000389)	SLC44A3 (ENSABRG00000014978)	CNN3 (ENSABRG00000014970)	ALG14 (ENSABRG00000014955)	TLCD4 (ENSABRG00000014942)	HCCS (ENSABRG00000014937)	RWDD3 (ENSABRG00000014934)	PTBP2 (ENSABRG00000014916)	DPYD (ENSABRG00000014908)	SNX7 (ENSABRG00000014889)	PLPPR5 (ENSABRG00000014884)	PLPPR4 (ENSABRG00000014882)	PALMD (ENSABRG00000014880)	FRRS1 (ENSABRG00000014851)	AGL (ENSABRG00000014629)
Duck	MODERN SPECIES	26	RPAP2 (ENSAPLG00000015165)	GFI1 (ENSAPLG00000015700)	EVI5 (ENSAPLG00000015768)	RPL5 (ENSAPLG00000015966)	DIPK1A (ENSAPLG00000016170)	MTF2 (ENSAPLG00000016259)	TMED5 (ENSAPLG00000026535)	CCDC18 (ENSAPLG00000002499)	FNBP1L (ENSAPLG00000003118)	BCAR3 (ENSAPLG00000003983)	DNTTIP2 (ENSAPLG00000023175)	ENSAPLG00000029990	ENSAPLG00000007564	ABCA4 (ENSAPLG00000007981)	ARHGAP29 (ENSAPLG00000008546)	ABCD3 (ENSAPLG00000009113) ##22	F3 (ENSAPLG00000026724)	SLC44A3 (ENSAPLG00000010624)	CNN3 (ENSAPLG00000011050)	TLCD4 (ENSAPLG00000011302)	RWDD3 (ENSAPLG00000011469)	PTBP2 (ENSAPLG00000011687)	DPYD (ENSAPLG00000012045)	SNX7 (ENSAPLG00000012736)	PLPPR5 (ENSAPLG00000017777)	PLPPR4 (ENSAPLG00000013020)	PALMD (ENSAPLG00000013197)	FRRS1 (ENSAPLG00000013379)	AGL (ENSAPLG00000013474)	SLC35A3 (ENSAPLG00000014199)	MFSD14A (ENSAPLG00000014324)
Phasianidae	ANCESTRAL SPECIES	7	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b.e	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT01090000263431	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Phasianidae_b	ANCESTRAL SPECIES	7	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b.e	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT01090000263431	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Chicken	MODERN SPECIES	37	EVI5 (ENSGALG00010021817)	RPL5 (ENSGALG00010021788)	FAM69A (ENSGALG00010021768)	MTF2 (ENSGALG00010021753)	TMED5 (ENSGALG00010021728)	CCDC18 (ENSGALG00010021705)	ENSGALG00010024530	DR1 (ENSGALG00010021701)	FNBP1L (ENSGALG00010021254)	BCAR3 (ENSGALG00010021242)	DNTTIP2 (ENSGALG00010024522)	GCLM (ENSGALG00010021195)	ENSGALG00010021171	ABCA4 (ENSGALG00010021143)	ARHGAP29 (ENSGALG00010021139)	ABCD3 (ENSGALG00010020934) ##22	F3 (ENSGALG00010021018)	SLC44A3 (ENSGALG00010021002)	CNN3 (ENSGALG00010024510)	ALG14 (ENSGALG00010020991)	TLCD4 (ENSGALG00010020982)	HCCS (ENSGALG00010020975)	RWDD3 (ENSGALG00010024209)	PTBP2 (ENSGALG00010024204)	DPYD (ENSGALG00010024191)	SNX7 (ENSGALG00010024155)	ENSGALG00010024130	PLPPR4 (ENSGALG00010024123)	PLPPR5 (ENSGALG00010024104)	PALMD (ENSGALG00010024083)	FRRS1 (ENSGALG00010024060)
Turkey	MODERN SPECIES	1	ENSMGAG00000007077	ENSMGAG00000020192	AGL (ENSMGAG00000007108)	ENSMGAG00000007166	ENSMGAG00000007148	PLPPR4 (ENSMGAG00000007195)	ENSMGAG00000007233	ENSMGAG00000007218	ENSMGAG00000007308	ENSMGAG00000007346	ENSMGAG00000007349	ENSMGAG00000007387	ENSMGAG00000007396	ENSMGAG00000007428	ENSMGAG00000007472	ENSMGAG00000007488 ##22	ENSMGAG00000007556	ENSMGAG00000007608	ENSMGAG00000007764	ENSMGAG00000007822	ENSMGAG00000007843	ENSMGAG00000020782	ENSMGAG00000007855	ENSMGAG00000007893	ENSMGAG00000018571	ENSMGAG00000007977	ENSMGAG00000007990	ENSMGAG00000008032	ENSMGAG00000022542	MTF2 (ENSMGAG00000008037)	ENSMGAG00000008090
Japanese quail	MODERN SPECIES	26	EVI5 (ENSCJPG00005008161)	RPL5 (ENSCJPG00005008159)	DIPK1A (ENSCJPG00005008158)	MTF2 (ENSCJPG00005008156)	TMED5 (ENSCJPG00005008154)	CCDC18 (ENSCJPG00005008153)	ENSCJPG00005008151	DR1 (ENSCJPG00005008150)	FNBP1L (ENSCJPG00005008149)	BCAR3 (ENSCJPG00005008147)	DNTTIP2 (ENSCJPG00005008146)	GCLM (ENSCJPG00005008145)	ENSCJPG00005008143	ABCA4 (ENSCJPG00005004231)	ARHGAP29 (ENSCJPG00005004217)	ABCD3 (ENSCJPG00005000760) ##22	F3 (ENSCJPG00005000713)	SLC44A3 (ENSCJPG00005000427)	CNN3 (ENSCJPG00005000418)	ALG14 (ENSCJPG00005000415)	TLCD4 (ENSCJPG00005000411)	HCCS (ENSCJPG00005000410)	RWDD3 (ENSCJPG00005000407)	PTBP2 (ENSCJPG00005000379)	DPYD (ENSCJPG00005000340)	SNX7 (ENSCJPG00005000263)	PLPPR4 (ENSCJPG00005000251)	PLPPR5 (ENSCJPG00005000237)	PALMD (ENSCJPG00005000216)	FRRS1 (ENSCJPG00005000194)	AGL (ENSCJPG00005000148)
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Passeroidea	ANCESTRAL SPECIES	9	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Zebra finch	MODERN SPECIES	30	GFI1 (ENSTGUG00000006060)	EVI5 (ENSTGUG00000006013)	RPL5 (ENSTGUG00000005988)	DIPK1A (ENSTGUG00000020034)	MTF2 (ENSTGUG00000005964)	TMED5 (ENSTGUG00000025954)	CCDC18 (ENSTGUG00000005935)	ENSTGUG00000005931	DR1 (ENSTGUG00000005923)	FNBP1L (ENSTGUG00000005901)	BCAR3 (ENSTGUG00000005886)	DNTTIP2 (ENSTGUG00000027648)	ENSTGUG00000005827	ABCA4 (ENSTGUG00000005732)	ARHGAP29 (ENSTGUG00000005720)	ABCD3 (ENSTGUG00000005659) ##22	F3 (ENSTGUG00000005647)	CNN3 (ENSTGUG00000005620)	SLC44A3 (ENSTGUG00000005629)	ALG14 (ENSTGUG00000005611)	HCCS (ENSTGUG00000005585)	TLCD4 (ENSTGUG00000025957)	RWDD3 (ENSTGUG00000005583)	PTBP2 (ENSTGUG00000005558)	ENSTGUG00000028487	DPYD (ENSTGUG00000005495)	SNX7 (ENSTGUG00000005480)	PLPPR5 (ENSTGUG00000005466)	PLPPR4 (ENSTGUG00000028283)	PALMD (ENSTGUG00000005423)	FRRS1 (ENSTGUG00000005401)
Common canary	MODERN SPECIES	9	EVI5 (ENSSCAG00000013876)	RPL5 (ENSSCAG00000013846)	DIPK1A (ENSSCAG00000013842)	MTF2 (ENSSCAG00000013829)	TMED5 (ENSSCAG00000013827)	CCDC18 (ENSSCAG00000013794)	ENSSCAG00000013776	DR1 (ENSSCAG00000013772)	FNBP1L (ENSSCAG00000013624)	BCAR3 (ENSSCAG00000013573)	DNTTIP2 (ENSSCAG00000013558)	GCLM (ENSSCAG00000013521)	ENSSCAG00000013484	ABCA4 (ENSSCAG00000012791)	ARHGAP29 (ENSSCAG00000012633)	ABCD3 (ENSSCAG00000012606) ##22	F3 (ENSSCAG00000012591)	SLC44A3 (ENSSCAG00000012568)	CNN3 (ENSSCAG00000012555)	ALG14 (ENSSCAG00000012549)	ENSSCAG00000012541	TLCD4 (ENSSCAG00000012533)	HCCS (ENSSCAG00000012531)	RWDD3 (ENSSCAG00000012502)	PTBP2 (ENSSCAG00000012491)	DPYD (ENSSCAG00000012468)	SNX7 (ENSSCAG00000012459)	PLPPR5 (ENSSCAG00000012455)	PLPPR4 (ENSSCAG00000012446)	PALMD (ENSSCAG00000012443)	FRRS1 (ENSSCAG00000012423)
Medium ground finch	MODERN SPECIES	39	EVI5 (ENSGFOG00000006684)	RPL5 (ENSGFOG00000006719)	DIPK1A (ENSGFOG00000006729)	MTF2 (ENSGFOG00000006745)	TMED5 (ENSGFOG00000007135)	CCDC18 (ENSGFOG00000007159)	ENSGFOG00000007293	DR1 (ENSGFOG00000007302)	FNBP1L (ENSGFOG00000007310)	BCAR3 (ENSGFOG00000007331)	DNTTIP2 (ENSGFOG00000007341)	GCLM (ENSGFOG00000007353)	ENSGFOG00000007374	ABCA4 (ENSGFOG00000007406)	ARHGAP29 (ENSGFOG00000007603)	ABCD3 (ENSGFOG00000007623) ##22	F3 (ENSGFOG00000007644)	SLC44A3 (ENSGFOG00000007654)	CNN3 (ENSGFOG00000007675)	ALG14 (ENSGFOG00000007716)	TLCD4 (ENSGFOG00000007721)	HCCS (ENSGFOG00000007727)	RWDD3 (ENSGFOG00000007735)	PTBP2 (ENSGFOG00000007736)	DPYD (ENSGFOG00000007750)	SNX7 (ENSGFOG00000007780)	PLPPR5 (ENSGFOG00000007788)	PLPPR4 (ENSGFOG00000007822)	PALMD (ENSGFOG00000007832)	FRRS1 (ENSGFOG00000007845)	AGL (ENSGFOG00000007893)
Flycatcher	MODERN SPECIES	27	RPL5 (ENSFALG00000001722)	DIPK1A (ENSFALG00000001706)	MTF2 (ENSFALG00000025452)	TMED5 (ENSFALG00000024847)	CCDC18 (ENSFALG00000001687)	ENSFALG00000001678	DR1 (ENSFALG00000023380)	FNBP1L (ENSFALG00000002287)	BCAR3 (ENSFALG00000002288)	DNTTIP2 (ENSFALG00000002291)	GCLM (ENSFALG00000025340)	ENSFALG00000002295	ENSFALG00000002310	ENSFALG00000027400	ARHGAP29 (ENSFALG00000002340)	ABCD3 (ENSFALG00000002342) ##22	F3 (ENSFALG00000002344)	SLC44A3 (ENSFALG00000002351)	CNN3 (ENSFALG00000002369)	TLCD4 (ENSFALG00000002372)	HCCS (ENSFALG00000026774)	RWDD3 (ENSFALG00000023302)	PTBP2 (ENSFALG00000002383)	DPYD (ENSFALG00000002389)	SNX7 (ENSFALG00000002392)	PLPPR5 (ENSFALG00000025997)	ENSFALG00000026597	PLPPR4 (ENSFALG00000026215)	PALMD (ENSFALG00000002400)	FRRS1 (ENSFALG00000002402)	AGL (ENSFALG00000002403)
Great tit	MODERN SPECIES	28	EVI5 (ENSPMJG00000019391)	RPL5 (ENSPMJG00000019389)	DIPK1A (ENSPMJG00000019388)	MTF2 (ENSPMJG00000019386)	TMED5 (ENSPMJG00000019385)	CCDC18 (ENSPMJG00000019384)	ENSPMJG00000019383	DR1 (ENSPMJG00000019382)	FNBP1L (ENSPMJG00000019381)	BCAR3 (ENSPMJG00000019380)	DNTTIP2 (ENSPMJG00000019378)	GCLM (ENSPMJG00000019377)	ENSPMJG00000019376	ABCA4 (ENSPMJG00000019363)	ARHGAP29 (ENSPMJG00000019362)	ABCD3 (ENSPMJG00000019361) ##22	F3 (ENSPMJG00000019360)	SLC44A3 (ENSPMJG00000019359)	CNN3 (ENSPMJG00000019358)	ALG14 (ENSPMJG00000019357)	TLCD4 (ENSPMJG00000019355)	HCCS (ENSPMJG00000019354)	RWDD3 (ENSPMJG00000019353)	PTBP2 (ENSPMJG00000019348)	DPYD (ENSPMJG00000019347)	SNX7 (ENSPMJG00000019341)	PLPPR5 (ENSPMJG00000019340)	PLPPR4 (ENSPMJG00000019339)	PALMD (ENSPMJG00000019338)	FRRS1 (ENSPMJG00000019337)	AGL (ENSPMJG00000019336)
Neognathae_c	ANCESTRAL SPECIES	7	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Golden eagle	MODERN SPECIES	3	EVI5 (ENSACCG00020001507)	RPL5 (ENSACCG00020001431)	DIPK1A (ENSACCG00020001401)	MTF2 (ENSACCG00020001382)	TMED5 (ENSACCG00020001365)	CCDC18 (ENSACCG00020001301)	ENSACCG00020001211	DR1 (ENSACCG00020001197)	FNBP1L (ENSACCG00020001166)	BCAR3 (ENSACCG00020001116)	DNTTIP2 (ENSACCG00020001084)	GCLM (ENSACCG00020001064)	ENSACCG00020001044	ABCA4 (ENSACCG00020000968)	ARHGAP29 (ENSACCG00020000787)	ABCD3 (ENSACCG00020000721) ##22	F3 (ENSACCG00020000680)	SLC44A3 (ENSACCG00020000639)	CNN3 (ENSACCG00020000609)	TLCD4 (ENSACCG00020000570)	HCCS (ENSACCG00020009980)	RWDD3 (ENSACCG00020009972)	PTBP2 (ENSACCG00020009947)	DPYD (ENSACCG00020009913)	SNX7 (ENSACCG00020009879)	PLPPR5 (ENSACCG00020009849)	PLPPR4 (ENSACCG00020009824)	PALMD (ENSACCG00020009807)	FRRS1 (ENSACCG00020009767)	AGL (ENSACCG00020009708)	SLC35A3 (ENSACCG00020009677)
Kakapo	MODERN SPECIES	25	DPYD (ENSSHBG00005012021)	PTBP2 (ENSSHBG00005013870)	RWDD3 (ENSSHBG00005013880)	HCCS (ENSSHBG00005013889)	TLCD4 (ENSSHBG00005013899)	ALG14 (ENSSHBG00005013906)	CNN3 (ENSSHBG00005013919)	SLC44A3 (ENSSHBG00005013931)	F3 (ENSSHBG00005013945)	DNTTIP2 (ENSSHBG00005013975)	GCLM (ENSSHBG00005013995)	ENSSHBG00005014011	ENSSHBG00005014037	ENSSHBG00005014078	ARHGAP29 (ENSSHBG00005014100)	ABCD3 (ENSSHBG00005014154) ##22	ODF2L (ENSSHBG00005014211)	CLCA1 (ENSSHBG00005014229)	SH3GLB1 (ENSSHBG00005014257)	ENSSHBG00005014267	HS2ST1 (ENSSHBG00005014272)	LMO4 (ENSSHBG00005014278)	PKN2 (ENSSHBG00005014287)	GTF2B (ENSSHBG00005014300)	KYAT3 (ENSSHBG00005014312)	LRRC8B (ENSSHBG00005014327)	LRRC8C (ENSSHBG00005014355)	LRRC8D (ENSSHBG00005014361)	ZNF326 (ENSSHBG00005014378)	BARHL2 (ENSSHBG00005014389)	ZNF644 (ENSSHBG00005005132)
African ostrich	MODERN SPECIES	1012											BCAR3 (ENSSCUG00000014718)	DNTTIP2 (ENSSCUG00000014715)	ENSSCUG00000014712	ABCA4 (ENSSCUG00000014390)	ARHGAP29 (ENSSCUG00000014292)	ABCD3 (ENSSCUG00000014285) ##22	F3 (ENSSCUG00000014281)	SLC44A3 (ENSSCUG00000014278)	CNN3 (ENSSCUG00000014276)	TLCD4 (ENSSCUG00000014275)	HCCS (ENSSCUG00000014273)	RWDD3 (ENSSCUG00000014271)	PTBP2 (ENSSCUG00000014250)	DPYD (ENSSCUG00000014235)	SNX7 (ENSSCUG00000014224)	PLPPR5 (ENSSCUG00000014217)	PLPPR4 (ENSSCUG00000014215)	PALMD (ENSSCUG00000014211)	FRRS1 (ENSSCUG00000014203)	AGL (ENSSCUG00000014165)	SLC35A3 (ENSSCUG00000014135)
Australian saltwater crocodile	MODERN SPECIES	28	GFI1 (ENSCPRG00005016556)	EVI5 (ENSCPRG00005016539)	RPL5 (ENSCPRG00005016521)	DIPK1A (ENSCPRG00005016519)	ENSCPRG00005016517	ENSCPRG00005016514	TMED5 (ENSCPRG00005016513)	CCDC18 (ENSCPRG00005016502)	ENSCPRG00005016493	FNBP1L (ENSCPRG00005016484)	BCAR3 (ENSCPRG00005016478)	DNTTIP2 (ENSCPRG00005016464)	ENSCPRG00005016455	ABCA4 (ENSCPRG00005015301)	ARHGAP29 (ENSCPRG00005014916)	ABCD3 (ENSCPRG00005014903) ##22	F3 (ENSCPRG00005014884)	SLC44A3 (ENSCPRG00005014876)	CNN3 (ENSCPRG00005014817)	ALG14 (ENSCPRG00005014811)	HCCS (ENSCPRG00005014808)	RWDD3 (ENSCPRG00005014803)	PTBP2 (ENSCPRG00005014798)	DPYD (ENSCPRG00005014785)	SNX7 (ENSCPRG00005014762)	PLPPR5 (ENSCPRG00005014761)	PLPPR4 (ENSCPRG00005014757)	PALMD (ENSCPRG00005014754)	FRRS1 (ENSCPRG00005014750)	AGL (ENSCPRG00005014532)	ENSCPRG00005014504
Cryptodira	ANCESTRAL SPECIES	8	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b.a	ENSGT00500000044896.d	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Emydidae	ANCESTRAL SPECIES	24	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b.a	ENSGT00500000044896.c	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	97	ENSTMTG00000008201	ENSTMTG00000008160	ENSTMTG00000008106	ENSTMTG00000008069	ENSTMTG00000008061	ENSTMTG00000007934	ENSTMTG00000007904	ENSTMTG00000007895	ENSTMTG00000007458	ENSTMTG00000007395	ENSTMTG00000007376	ENSTMTG00000007336	ENSTMTG00000007309	ENSTMTG00000007231	ENSTMTG00000007208	ENSTMTG00000004643 ##22	ENSTMTG00000004336	ENSTMTG00000004252	ENSTMTG00000004227	ENSTMTG00000004216	ENSTMTG00000004168	ENSTMTG00000004158	ENSTMTG00000004145	ENSTMTG00000004110	ENSTMTG00000004017	ENSTMTG00000003838	ENSTMTG00000003793	ENSTMTG00000003769	ENSTMTG00000003744	ENSTMTG00000003194	ENSTMTG00000003087
Three-toed box turtle	MODERN SPECIES	98	ENSTMTG00000005152	ENSTMTG00000005121	ENSTMTG00000005115	ENSTMTG00000005073	ENSTMTG00000005054	ENSTMTG00000004907	ENSTMTG00000004864	ENSTMTG00000004854	ENSTMTG00000004815	ENSTMTG00000004764	ENSTMTG00000004742	ENSTMTG00000004667	ENSTMTG00000004629	ENSTMTG00000004556	ENSTMTG00000004483	ENSTMTG00000004191 ##22	ENSTMTG00000004134	ENSTMTG00000003963	ENSTMTG00000003932	ENSTMTG00000003919	ENSTMTG00000003861	ENSTMTG00000003841	ENSTMTG00000003831	ENSTMTG00000003811	ENSTMTG00000003796	ENSTMTG00000003658	ENSTMTG00000003598	ENSTMTG00000003572	ENSTMTG00000003531	ENSTMTG00000003501	ENSTMTG00000003178
painted turtle	MODERN SPECIES	2433		MTF2 (ENSCPBG00000017419)	TMED5 (ENSCPBG00000017416)	CCDC18 (ENSCPBG00000017414)	ENSCPBG00000017407	DR1 (ENSCPBG00000017406)	FNBP1L (ENSCPBG00000017401)	ENSCPBG00000017398	BCAR3 (ENSCPBG00000017396)	DNTTIP2 (ENSCPBG00000017394)	GCLM (ENSCPBG00000017392)	ENSCPBG00000017390	ENSCPBG00000017389	ABCA4 (ENSCPBG00000017387)	ARHGAP29 (ENSCPBG00000017386)	ABCD3 (ENSCPBG00000017384) ##22	F3 (ENSCPBG00000017382)	SLC44A3 (ENSCPBG00000017381)	CNN3 (ENSCPBG00000017378)	ALG14 (ENSCPBG00000017377)	TLCD4 (ENSCPBG00000017373)	HCCS (ENSCPBG00000017370)	RWDD3 (ENSCPBG00000017369)	PTBP2 (ENSCPBG00000017367)	ENSCPBG00000017366	SYT4 (ENSCPBG00000017364)
Testudinidae	ANCESTRAL SPECIES	23	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b.a	ENSGT00500000044896.d	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Abingdon island giant tortoise	MODERN SPECIES	578													ENSCABG00000014973	ARHGAP29 (ENSCABG00000014972)	ENSCABG00000014971	ABCD3 (ENSCABG00000014045) ##22	F3 (ENSCABG00000014025)	SLC44A3 (ENSCABG00000014019)	CNN3 (ENSCABG00000014016)
Goode s thornscrub tortoise	MODERN SPECIES	22	EVI5 (ENSGEVG00005004561)	RPL5 (ENSGEVG00005004377)	DIPK1A (ENSGEVG00005004307)	MTF2 (ENSGEVG00005004208)	TMED5 (ENSGEVG00005004173)	CCDC18 (ENSGEVG00005004072)	RDH8 (ENSGEVG00005015354)	DR1 (ENSGEVG00005015342)	FNBP1L (ENSGEVG00005015301)	BCAR3 (ENSGEVG00005015211)	DNTTIP2 (ENSGEVG00005015184)	GCLM (ENSGEVG00005015158)	ENSGEVG00005014852	ABCA4 (ENSGEVG00005014159)	ARHGAP29 (ENSGEVG00005014048)	ABCD3 (ENSGEVG00005013981) ##22	F3 (ENSGEVG00005013769)	SLC44A3 (ENSGEVG00005013534)	CNN3 (ENSGEVG00005013483)	ALG14 (ENSGEVG00005013456)	TLCD4 (ENSGEVG00005013277)	HCCS (ENSGEVG00005013246)	RWDD3 (ENSGEVG00005013205)	PTBP2 (ENSGEVG00005013125)	DPYD (ENSGEVG00005013003)	SNX7 (ENSGEVG00005012959)	PLPPR5 (ENSGEVG00005012894)	PLPPR4 (ENSGEVG00005012830)	PALMD (ENSGEVG00005012773)	ENSGEVG00005012727	FRRS1 (ENSGEVG00005012639)
Chinese turtle	MODERN SPECIES	377	EVI5 (ENSPSIG00000008714)	RPL5 (ENSPSIG00000008642)	DIPK1A (ENSPSIG00000008617)	MTF2 (ENSPSIG00000008513)	TMED5 (ENSPSIG00000008508)	CCDC18 (ENSPSIG00000008498)	ENSPSIG00000008453	DR1 (ENSPSIG00000008429)	FNBP1L (ENSPSIG00000008423)	BCAR3 (ENSPSIG00000008285)	DNTTIP2 (ENSPSIG00000008273)	GCLM (ENSPSIG00000008171)	ENSPSIG00000008120	ABCA4 (ENSPSIG00000007886)	ARHGAP29 (ENSPSIG00000007870)	ABCD3 (ENSPSIG00000007500) ##22	F3 (ENSPSIG00000007463)	SLC44A3 (ENSPSIG00000007191)	CNN3 (ENSPSIG00000007117)	ALG14 (ENSPSIG00000007099)	TLCD4 (ENSPSIG00000007089)	HCCS (ENSPSIG00000007023)	RWDD3 (ENSPSIG00000006972)	PTBP2 (ENSPSIG00000006634)
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
tuatara	MODERN SPECIES	491	RPL5 (ENSSPUG00000002771)	DIPK1A (ENSSPUG00000002753)	MTF2 (ENSSPUG00000002716)	TMED5 (ENSSPUG00000002706)	CCDC18 (ENSSPUG00000002648)	ENSSPUG00000002635	DR1 (ENSSPUG00000002629)	FNBP1L (ENSSPUG00000002597)	BCAR3 (ENSSPUG00000002490)	DNTTIP2 (ENSSPUG00000002461)	GCLM (ENSSPUG00000002445)	ENSSPUG00000002395	ENSSPUG00000002352	ENSSPUG00000002330	ARHGAP29 (ENSSPUG00000002124)	ABCD3 (ENSSPUG00000002055) ##22
Episquamata	ANCESTRAL SPECIES	1	ENSGT00950000182827.C	ENSGT00940000164178	ENSGT01060000249917	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Laterata	ANCESTRAL SPECIES	3	ENSGT00950000182827.C	ENSGT00940000164178	ENSGT01060000249917	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Common wall lizard	MODERN SPECIES	14	ENSPMRG00000011025	ENSPMRG00000011063	MTF2 (ENSPMRG00000011067)	TMED5 (ENSPMRG00000011076)	CCDC18 (ENSPMRG00000011097)	ENSPMRG00000011153	DR1 (ENSPMRG00000011158)	FNBP1L (ENSPMRG00000011163)	ENSPMRG00000011171	BCAR3 (ENSPMRG00000011174)	DNTTIP2 (ENSPMRG00000011182)	GCLM (ENSPMRG00000011187)	ENSPMRG00000011191	ABCA4 (ENSPMRG00000011527)	ARHGAP29 (ENSPMRG00000013861)	ABCD3 (ENSPMRG00000013882) ##22	F3 (ENSPMRG00000013903)	SLC44A3 (ENSPMRG00000013913)	CNN3 (ENSPMRG00000013923)	ALG14 (ENSPMRG00000013927)	TLCD4 (ENSPMRG00000013936)	HCCS (ENSPMRG00000013937)	RWDD3 (ENSPMRG00000013943)	PTBP2 (ENSPMRG00000013963)	DPYD (ENSPMRG00000014006)	SNX7 (ENSPMRG00000007100)	ENSPMRG00000007117	PLPPR5 (ENSPMRG00000007122)	ENSPMRG00000007129	PALMD (ENSPMRG00000007141)	FRRS1 (ENSPMRG00000007165)
Argentine black and white tegu	MODERN SPECIES	17	ENSSMRG00000014615	MTF2 (ENSSMRG00000014617)	TMED5 (ENSSMRG00000014619)	CCDC18 (ENSSMRG00000014621)	ENSSMRG00000014625	ENSSMRG00000014646	DR1 (ENSSMRG00000014649)	FNBP1L (ENSSMRG00000014651)	BCAR3 (ENSSMRG00000014654)	DNTTIP2 (ENSSMRG00000014661)	GCLM (ENSSMRG00000014663)	ENSSMRG00000014664	ABCA4 (ENSSMRG00000014700)	ARHGAP29 (ENSSMRG00000017802)	NUF2 (ENSSMRG00000017804)	ABCD3 (ENSSMRG00000017805) ##22	F3 (ENSSMRG00000017813)	SLC44A3 (ENSSMRG00000017814)	CNN3 (ENSSMRG00000017815)	ALG14 (ENSSMRG00000017821)	TLCD4 (ENSSMRG00000017823)	HCCS (ENSSMRG00000017825)	RWDD3 (ENSSMRG00000017833)	ENSSMRG00000017842	PTBP2 (ENSSMRG00000017853)	DPYD (ENSSMRG00000017864)	SNX7 (ENSSMRG00000018072)	PLPPR5 (ENSSMRG00000018073)	PLPPR4 (ENSSMRG00000018078)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00950000182827.C	ENSGT00940000164178	ENSGT01060000249917	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Lizard	MODERN SPECIES	3	ENSACAG00000039280	ENSACAG00000005794	MTF2 (ENSACAG00000005728)	TMED5 (ENSACAG00000005685)	CCDC18 (ENSACAG00000005571)	ENSACAG00000005553	DR1 (ENSACAG00000005545)	FNBP1L (ENSACAG00000005461)	BCAR3 (ENSACAG00000005406)	DNTTIP2 (ENSACAG00000005369)	GCLM (ENSACAG00000005305)	ENSACAG00000005267	ABCA4 (ENSACAG00000005200)	ARHGAP29 (ENSACAG00000005112)	ENSACAG00000043414	ABCD3 (ENSACAG00000004947) ##22	F3 (ENSACAG00000004924)	SLC44A3 (ENSACAG00000004877)	CNN3 (ENSACAG00000004856)	ALG14 (ENSACAG00000004845)	TLCD4 (ENSACAG00000037070)	ENSACAG00000004808	RWDD3 (ENSACAG00000004789)	PTH2R (ENSACAG00000011092)	PIKFYVE (ENSACAG00000009917)	IDH1 (ENSACAG00000009873)	ENSACAG00000029434	C2orf80 (ENSACAG00000028731)	POFUT2 (ENSACAG00000009812)	ENSACAG00000009710	ENSACAG00000009709
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000157395	ENSGT00950000182827.C	ENSGT00940000164178	ENSGT01060000249917	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a.e ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Indian cobra	MODERN SPECIES	2	SASS6 (ENSNNAG00000002989)	MFSD14A (ENSNNAG00000002972)	SLC35A3 (ENSNNAG00000002952)	ENSNNAG00000002925	MTF2 (ENSNNAG00000002882)	TMED5 (ENSNNAG00000002868)	CCDC18 (ENSNNAG00000002756)	DR1 (ENSNNAG00000002719)	FNBP1L (ENSNNAG00000002710)	BCAR3 (ENSNNAG00000002695)	ENSNNAG00000002687	GCLM (ENSNNAG00000002680)	ENSNNAG00000002655	ABCA4 (ENSNNAG00000002589)	ARHGAP29 (ENSNNAG00000002359)	ABCD3 (ENSNNAG00000002283) ##22	F3 (ENSNNAG00000002274)	SLC44A3 (ENSNNAG00000002245)	CNN3 (ENSNNAG00000002236)	ALG14 (ENSNNAG00000002228)	TLCD4 (ENSNNAG00000002222)	HCCS (ENSNNAG00000002214)	RWDD3 (ENSNNAG00000002199)	ENSNNAG00000002177	ENSNNAG00000002156	DPYD (ENSNNAG00000001862)	ENSNNAG00000001460	SNX7 (ENSNNAG00000001433)	PLPPR5 (ENSNNAG00000001414)	PLPPR4 (ENSNNAG00000001390)	PALMD (ENSNNAG00000001340)
Elapidae_a	ANCESTRAL SPECIES	7	ENSGT00390000006932	ENSGT00940000157395	ENSGT00950000182827.C	ENSGT01060000249917	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a.e ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596.c
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00390000006932	ENSGT00940000157395	ENSGT00950000182827.C	ENSGT01060000249917	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a.e ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596.c
Eastern brown snake	MODERN SPECIES	13	SASS6 (ENSPTXG00000004841)	MFSD14A (ENSPTXG00000004837)	SLC35A3 (ENSPTXG00000004836)	ENSPTXG00000004834	MTF2 (ENSPTXG00000004826)	TMED5 (ENSPTXG00000004824)	CCDC18 (ENSPTXG00000004823)	DR1 (ENSPTXG00000004822)	FNBP1L (ENSPTXG00000004821)	BCAR3 (ENSPTXG00000004820)	DNTTIP2 (ENSPTXG00000004819)	GCLM (ENSPTXG00000004818)	ENSPTXG00000004817	ABCA4 (ENSPTXG00000004813)	ARHGAP29 (ENSPTXG00000004807)	ABCD3 (ENSPTXG00000004799) ##22	F3 (ENSPTXG00000004703)	SLC44A3 (ENSPTXG00000004700)	CNN3 (ENSPTXG00000004698)	ALG14 (ENSPTXG00000004696)	TLCD4 (ENSPTXG00000004694)	HCCS (ENSPTXG00000004693)	RWDD3 (ENSPTXG00000004692)	PTBP2 (ENSPTXG00000004691)	DPYD (ENSPTXG00000003743)	SNX7 (ENSPTXG00000003737)	PLPPR5 (ENSPTXG00000006567)	PLPPR4 (ENSPTXG00000006565)	PALMD (ENSPTXG00000006562)	FRRS1 (ENSPTXG00000006505)	AGL (ENSPTXG00000006500)
Mainland tiger snake	MODERN SPECIES	39	SASS6 (ENSNSUG00000006851)	MFSD14A (ENSNSUG00000006855)	SLC35A3 (ENSNSUG00000006872)	ENSNSUG00000006896	MTF2 (ENSNSUG00000006897)	TMED5 (ENSNSUG00000006934)	CCDC18 (ENSNSUG00000006937)	DR1 (ENSNSUG00000006941)	FNBP1L (ENSNSUG00000006943)	BCAR3 (ENSNSUG00000007507)	DNTTIP2 (ENSNSUG00000007508)	GCLM (ENSNSUG00000007512)	ENSNSUG00000007514	ABCA4 (ENSNSUG00000007524)	ARHGAP29 (ENSNSUG00000007543)	ABCD3 (ENSNSUG00000007546) ##22	F3 (ENSNSUG00000008050)	SLC44A3 (ENSNSUG00000008051)	CNN3 (ENSNSUG00000008053)	ALG14 (ENSNSUG00000008054)	TLCD4 (ENSNSUG00000008056)	HCCS (ENSNSUG00000008061)	RWDD3 (ENSNSUG00000008063)
Blue-lipped sea krait	MODERN SPECIES	1047																ENSLLTG00000010858 ##22
Elapidae	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.a.f ##22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.a.f ##22
Blue-lipped sea krait	MODERN SPECIES	1754																ENSLLTG00000009667 ##22
Mammalia	ANCESTRAL SPECIES	5	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Theria	ANCESTRAL SPECIES	3	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00530000064299	ENSGT01030000234556.a.b.b	ENSGT00390000000566	ENSGT00390000001092	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b.vb.a	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00390000013287.db.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00530000064299	ENSGT01030000234556.a.b.b	ENSGT00390000000566	ENSGT00390000001092	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b.vb.a	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00390000013287.db.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Diprotodontia	ANCESTRAL SPECIES	5															ENSGT00950000183110.b.b.f	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b.vb.a	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00390000013287.db.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Diprotodontia_a	ANCESTRAL SPECIES	6															ENSGT00950000183110.b.b.f	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b.vb.a	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00390000013287.db.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Common wonbat	MODERN SPECIES	1008														ENSVURG00010001524	ENSVURG00010001512	ABCD3 (ENSVURG00010001493) ##22	F3 (ENSVURG00010001481)	SLC44A3 (ENSVURG00010001414)	ENSVURG00010001320	ALG14 (ENSVURG00010001292)	TLCD4 (ENSVURG00010001282)	RWDD3 (ENSVURG00010001260)	PTBP2 (ENSVURG00010001218)
koala	MODERN SPECIES	4															ENSPCIG00000037443	ABCD3 (ENSPCIG00000005905) ##22	F3 (ENSPCIG00000005903)	SLC44A3 (ENSPCIG00000005899)	CNN3 (ENSPCIG00000005898)	ALG14 (ENSPCIG00000005896)	TLCD4 (ENSPCIG00000031742)	RWDD3 (ENSPCIG00000028712)	PTBP2 (ENSPCIG00000028710)	ENSPCIG00000022135	DPYD (ENSPCIG00000022142)	SNX7 (ENSPCIG00000033372)	PLPPR5 (ENSPCIG00000004143)	ENSPCIG00000006422	PLPPR4 (ENSPCIG00000006423)	PALMD (ENSPCIG00000007729)	FRRS1 (ENSPCIG00000007725)
Wallaby	MODERN SPECIES	2650																ABCD3 (ENSMEUG00000006826) ##22
Tasmanian devil	MODERN SPECIES	3	HLX (ENSSHAG00000012054)	ENSSHAG00000021614	MTARC2 (ENSSHAG00000011042)	ENSSHAG00000022205	ENSSHAG00000021067	ENSSHAG00000023068	CCDC18 (ENSSHAG00000001343)	DR1 (ENSSHAG00000023492)	FNBP1L (ENSSHAG00000002341)	BCAR3 (ENSSHAG00000004089)	ENSSHAG00000032347	GCLM (ENSSHAG00000004946)	ENSSHAG00000005994	ABCA4 (ENSSHAG00000007079)	ENSSHAG00000000933	ABCD3 (ENSSHAG00000007114) ##22	F3 (ENSSHAG00000008043)	SLC44A3 (ENSSHAG00000001240)	CNN3 (ENSSHAG00000002670)	ENSSHAG00000005113	TLCD4 (ENSSHAG00000028714)	RWDD3 (ENSSHAG00000008611)	PTBP2 (ENSSHAG00000016208)	ENSSHAG00000031642	DPYD (ENSSHAG00000016972)	SNX7 (ENSSHAG00000002487)	PLPPR5 (ENSSHAG00000007007)	PLPPR4 (ENSSHAG00000011285)	PALMD (ENSSHAG00000013717)	FRRS1 (ENSSHAG00000014067)	AGL (ENSSHAG00000014596)
Opossum	MODERN SPECIES	1	MPZ (ENSMODG00000005043)	SDHC (ENSMODG00000005031)	CFAP126 (ENSMODG00000038977)	MTF2 (ENSMODG00000004971)	TMED5 (ENSMODG00000004892)	CCDC18 (ENSMODG00000004872)	DR1 (ENSMODG00000004835)	FNBP1L (ENSMODG00000004822)	BCAR3 (ENSMODG00000004777)	ENSMODG00000004761	GCLM (ENSMODG00000038558)	ENSMODG00000023262	ABCA4 (ENSMODG00000004723)	ENSMODG00000025710	ENSMODG00000037595	ABCD3 (ENSMODG00000004497) ##22	ENSMODG00000041108	F3 (ENSMODG00000038382)	SLC44A3 (ENSMODG00000004435)	ENSMODG00000004326	ALG14 (ENSMODG00000004291)	TLCD4 (ENSMODG00000004285)	ENSMODG00000041668	RWDD3 (ENSMODG00000004278)	PTBP2 (ENSMODG00000004211)	ENSMODG00000023257	DPYD (ENSMODG00000004065)	ENSMODG00000036645	ENSMODG00000043824	SNX7 (ENSMODG00000003993)	PLPPR5 (ENSMODG00000003951)
Eutheria	ANCESTRAL SPECIES		ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00740000117159	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Atlantogenata	ANCESTRAL SPECIES	26	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00740000117159	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Xenarthra	ANCESTRAL SPECIES	538									ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00740000117159	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668
Sloth	MODERN SPECIES	1633																ABCD3 (ENSCHOG00000004101) ##22
Armadillo	MODERN SPECIES	810							DR1 (ENSDNOG00000009812)	ENSDNOG00000043291	FNBP1L (ENSDNOG00000049109)	BCAR3 (ENSDNOG00000009043)	ENSDNOG00000040563	ENSDNOG00000041868	GCLM (ENSDNOG00000014027)	ABCA4 (ENSDNOG00000014529)	ARHGAP29 (ENSDNOG00000014610)	ABCD3 (ENSDNOG00000009642) ##22	F3 (ENSDNOG00000017530)
Afrotheria	ANCESTRAL SPECIES	112	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B
Tenrec	MODERN SPECIES	1815																ABCD3 (ENSETEG00000019428) ##22
Afrotheria_a	ANCESTRAL SPECIES	114	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B
Hyrax	MODERN SPECIES	1467																ABCD3 (ENSPCAG00000003868) ##22
Elephant	MODERN SPECIES	473	RPAP2 (ENSLAFG00000007789)	GFI1 (ENSLAFG00000018346)	EVI5 (ENSLAFG00000018348)	ENSLAFG00000011916	DIPK1A (ENSLAFG00000001048)	MTF2 (ENSLAFG00000015037)	TMED5 (ENSLAFG00000009076)	CCDC18 (ENSLAFG00000009687)	DR1 (ENSLAFG00000017540)	FNBP1L (ENSLAFG00000016688)	BCAR3 (ENSLAFG00000005936)	DNTTIP2 (ENSLAFG00000004636)	GCLM (ENSLAFG00000013541)	ABCA4 (ENSLAFG00000007408)	ARHGAP29 (ENSLAFG00000008218)	ABCD3 (ENSLAFG00000003729) ##22	F3 (ENSLAFG00000012412)	SLC44A3 (ENSLAFG00000003210)	CNN3 (ENSLAFG00000003212)	ALG14 (ENSLAFG00000010844)	TLCD4 (ENSLAFG00000014170)	RWDD3 (ENSLAFG00000013626)	PTBP2 (ENSLAFG00000017343)	ENSLAFG00000027938	DPYD (ENSLAFG00000001798)	SNX7 (ENSLAFG00000004147)	PLPPR5 (ENSLAFG00000009826)	PLPPR4 (ENSLAFG00000010381)
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00740000117159	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00740000117159	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00740000117159	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00740000117159	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT01090000263431	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Chiroptera	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000159377	ENSGT00530000063877.b	ENSGT00940000163720	ENSGT00950000182818.A	ENSGT00940000161470	ENSGT00940000155952	ENSGT00940000155115.a.a	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000162435	ENSGT00940000158819	ENSGT00390000017282	ENSGT00940000157751	ENSGT00390000016823	ENSGT00730000111361
Microbat	MODERN SPECIES	1157										ENSMLUG00000013426	ENSMLUG00000001921	GCLM (ENSMLUG00000013439)	ENSMLUG00000005175	ABCA4 (ENSMLUG00000013363)	ARHGAP29 (ENSMLUG00000013393)	ABCD3 (ENSMLUG00000000203) ##22	F3 (ENSMLUG00000016369)	DCDC2 (ENSMLUG00000002341)	NRSN1 (ENSMLUG00000002338)
Greater horseshoe bat	MODERN SPECIES	27	GFI1 (ENSRFEG00010007082)	EVI5 (ENSRFEG00010007148)	ENSRFEG00010007432	DIPK1A (ENSRFEG00010007529)	MTF2 (ENSRFEG00010007651)	TMED5 (ENSRFEG00010007758)	CCDC18 (ENSRFEG00010007835)	DR1 (ENSRFEG00010008311)	FNBP1L (ENSRFEG00010008377)	BCAR3 (ENSRFEG00010009045)	DNTTIP2 (ENSRFEG00010009153)	GCLM (ENSRFEG00010009208)	ABCA4 (ENSRFEG00010009317)	ARHGAP29 (ENSRFEG00010009985)	ENSRFEG00010010026	ABCD3 (ENSRFEG00010010082) ##22	F3 (ENSRFEG00010010181)	DCDC2 (ENSRFEG00010010206)	NRSN1 (ENSRFEG00010010264)	HDGFL1 (ENSRFEG00010010353)	PRL (ENSRFEG00010010446)	SOX4 (ENSRFEG00010010645)	CDKAL1 (ENSRFEG00010010692)	E2F3 (ENSRFEG00010010820)	MBOAT1 (ENSRFEG00010010971)	ID4 (ENSRFEG00010011011)	RNF144B (ENSRFEG00010011064)	DEK (ENSRFEG00010011159)	KDM1B (ENSRFEG00010011616)	TPMT (ENSRFEG00010011736)	NHLRC1 (ENSRFEG00010011789)
Megabat	MODERN SPECIES	138																ABCD3 (ENSPVAG00000017192) ##22
Equus	ANCESTRAL SPECIES	3	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000154802.fb	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT01090000263431	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Donkey	MODERN SPECIES	7	EVI5 (ENSEASG00005015514)	ENSEASG00005015515	DIPK1A (ENSEASG00005030243)	MTF2 (ENSEASG00005015530)	TMED5 (ENSEASG00005034283)	CCDC18 (ENSEASG00005015570)	ENSEASG00005015583	DR1 (ENSEASG00005025520)	ENSEASG00005015589	FNBP1L (ENSEASG00005015587)	BCAR3 (ENSEASG00005015591)	DNTTIP2 (ENSEASG00005015594)	GCLM (ENSEASG00005015597)	ABCA4 (ENSEASG00005015609)	ARHGAP29 (ENSEASG00005015647)	ABCD3 (ENSEASG00005015685) ##22	F3 (ENSEASG00005015695)	SLC44A3 (ENSEASG00005015701)	CNN3 (ENSEASG00005032123)	ALG14 (ENSEASG00005034081)	TLCD4 (ENSEASG00005026339)	RWDD3 (ENSEASG00005015716)	PTBP2 (ENSEASG00005015719)	DPYD (ENSEASG00005015723)	SNX7 (ENSEASG00005015730)	ENSEASG00005035832	PLPPR5 (ENSEASG00005015733)	PLPPR4 (ENSEASG00005015735)	PALMD (ENSEASG00005015736)	FRRS1 (ENSEASG00005015739)	AGL (ENSEASG00005015755)
Horse	MODERN SPECIES	26	DIPK1A (ENSECAG00000020711)	ENSECAG00000051377	MTF2 (ENSECAG00000017368)	TMED5 (ENSECAG00000016426)	ENSECAG00000057950	ENSECAG00000046837	CCDC18 (ENSECAG00000014091)	ENSECAG00000031491	DR1 (ENSECAG00000010209)	FNBP1L (ENSECAG00000004536)	BCAR3 (ENSECAG00000022721)	DNTTIP2 (ENSECAG00000022045)	GCLM (ENSECAG00000021993)	ABCA4 (ENSECAG00000013379)	ARHGAP29 (ENSECAG00000009393)	ABCD3 (ENSECAG00000023731) ##22	F3 (ENSECAG00000023416)	ENSECAG00000058691	SLC44A3 (ENSECAG00000021520)	CNN3 (ENSECAG00000020188)	ENSECAG00000054152	ALG14 (ENSECAG00000020146)	TLCD4 (ENSECAG00000019335)	RWDD3 (ENSECAG00000018873)	PTBP2 (ENSECAG00000015783)	DPYD (ENSECAG00000010881)	ENSECAG00000029345	SNX7 (ENSECAG00000008507)	PLPPR5 (ENSECAG00000008034)	PLPPR4 (ENSECAG00000004854)	PALMD (ENSECAG00000001074)
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00740000117159	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Caniformia	ANCESTRAL SPECIES	2	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00740000117159	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00740000117159	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000186000	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00950000183030.m.a.a.b.a.a.b	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Ursidae	ANCESTRAL SPECIES	32	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000186000	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00950000183030.m.a.a.b.a.a.b	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Ursus	ANCESTRAL SPECIES	119	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000186000	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00950000183030.m.a.a.b.a.a.b	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C	ENSGT00940000157395
American black bear	MODERN SPECIES	3150															ARHGAP29 (ENSUAMG00000021925)	ABCD3 (ENSUAMG00000021922) ##22	F3 (ENSUAMG00000021918)
Polar bear	MODERN SPECIES	208	RPAP2 (ENSUMAG00000011257)	ENSUMAG00000011251	EVI5 (ENSUMAG00000011159)	ENSUMAG00000011129	DIPK1A (ENSUMAG00000011127)	MTF2 (ENSUMAG00000011102)	TMED5 (ENSUMAG00000011101)	CCDC18 (ENSUMAG00000011014)	FNBP1L (ENSUMAG00000010351)	BCAR3 (ENSUMAG00000010214)	DNTTIP2 (ENSUMAG00000010202)	GCLM (ENSUMAG00000010195)	ABCA4 (ENSUMAG00000010104)	ENSUMAG00000010069	ARHGAP29 (ENSUMAG00000009961)	ABCD3 (ENSUMAG00000009085) ##22	F3 (ENSUMAG00000008977)	SLC44A3 (ENSUMAG00000008956)	CNN3 (ENSUMAG00000008950)	ALG14 (ENSUMAG00000008944)	TLCD4 (ENSUMAG00000008939)	RWDD3 (ENSUMAG00000008936)	PTBP2 (ENSUMAG00000008920)	ENSUMAG00000008914	DPYD (ENSUMAG00000008909)	ENSUMAG00000008887	ENSUMAG00000008880	SNX7 (ENSUMAG00000008873)	PLPPR4 (ENSUMAG00000008845)	PALMD (ENSUMAG00000008809)	FRRS1 (ENSUMAG00000008803)
Giant Panda	MODERN SPECIES	11	GFI1 (ENSAMEG00000031156)	EVI5 (ENSAMEG00000009896)	RPL5 (ENSAMEG00000009878)	DIPK1A (ENSAMEG00000009868)	MTF2 (ENSAMEG00000009820)	TMED5 (ENSAMEG00000009807)	CCDC18 (ENSAMEG00000009774)	DR1 (ENSAMEG00000009760)	FNBP1L (ENSAMEG00000009719)	BCAR3 (ENSAMEG00000009691)	DNTTIP2 (ENSAMEG00000009682)	GCLM (ENSAMEG00000009664)	ABCA4 (ENSAMEG00000009466)	ENSAMEG00000009510	ARHGAP29 (ENSAMEG00000009423)	ABCD3 (ENSAMEG00000009364) ##22	F3 (ENSAMEG00000009345)	SLC44A3 (ENSAMEG00000009325)	CNN3 (ENSAMEG00000016707)	ALG14 (ENSAMEG00000016703)	TLCD4 (ENSAMEG00000016699)	RWDD3 (ENSAMEG00000016693)	PTBP2 (ENSAMEG00000016677)	DPYD (ENSAMEG00000016662)	ENSAMEG00000027592	SNX7 (ENSAMEG00000000917)	PLPPR5 (ENSAMEG00000009177)	PLPPR4 (ENSAMEG00000009158)	PALMD (ENSAMEG00000009144)	FRRS1 (ENSAMEG00000009110)	AGL (ENSAMEG00000009054)
Mustelinae	ANCESTRAL SPECIES	60	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00740000117159	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000186000	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00950000183030.m.a.a.b.a.a.b	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Ferret	MODERN SPECIES	197	ENSMPUG00000004102	DIPK1A (ENSMPUG00000004095)	ENSMPUG00000004091	MTF2 (ENSMPUG00000004081)	TMED5 (ENSMPUG00000004079)	CCDC18 (ENSMPUG00000004059)	ENSMPUG00000004035	DR1 (ENSMPUG00000004025)	FNBP1L (ENSMPUG00000004018)	BCAR3 (ENSMPUG00000004013)	ENSMPUG00000004007	DNTTIP2 (ENSMPUG00000004000)	GCLM (ENSMPUG00000003928)	ABCA4 (ENSMPUG00000003394)	ARHGAP29 (ENSMPUG00000003377)	ABCD3 (ENSMPUG00000003362) ##22	F3 (ENSMPUG00000003357)	ENSMPUG00000003352	SLC44A3 (ENSMPUG00000003341)	ENSMPUG00000003332	ENSMPUG00000003322	ENSMPUG00000003314	RWDD3 (ENSMPUG00000003307)	PTBP2 (ENSMPUG00000003292)	DPYD (ENSMPUG00000003278)	ENSMPUG00000018785	SNX7 (ENSMPUG00000003273)	PLPPR5 (ENSMPUG00000003266)	PLPPR4 (ENSMPUG00000003259)
American mink	MODERN SPECIES	52	EVI5 (ENSNVIG00000018444)	ENSNVIG00000018477	DIPK1A (ENSNVIG00000018515)	MTF2 (ENSNVIG00000018537)	TMED5 (ENSNVIG00000018566)	CCDC18 (ENSNVIG00000018584)	DR1 (ENSNVIG00000018633)	ENSNVIG00000018642	FNBP1L (ENSNVIG00000018663)	BCAR3 (ENSNVIG00000018770)	DNTTIP2 (ENSNVIG00000018818)	GSH0 (ENSNVIG00000018834)	ABCA4 (ENSNVIG00000018869)	ENSNVIG00000018922	ARHGAP29 (ENSNVIG00000018927)	ABCD3 (ENSNVIG00000018976) ##22	F3 (ENSNVIG00000019055)	SLC44A3 (ENSNVIG00000019094)	ENSNVIG00000019226	ALG14 (ENSNVIG00000019287)	TMM56 (ENSNVIG00000019296)	RWDD3 (ENSNVIG00000019364)	PTBP2 (ENSNVIG00000019381)	DPYD (ENSNVIG00000019463)	SNX7 (ENSNVIG00000019491)	PLPPR5 (ENSNVIG00000019519)	ENSNVIG00000019540
Canidae	ANCESTRAL SPECIES	18	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Dog	MODERN SPECIES	34	RPAP2 (ENSCAFG00845015489)	GFI1 (ENSCAFG00845015425)	EVI5 (ENSCAFG00845015142)	RPL5 (ENSCAFG00845014925)	DIPK1A (ENSCAFG00845014860)	MTF2 (ENSCAFG00845014796)	TMED5 (ENSCAFG00845014750)	CCDC18 (ENSCAFG00845014633)	DR1 (ENSCAFG00845014570)	FNBP1L (ENSCAFG00845014505)	BCAR3 (ENSCAFG00845015973)	DNTTIP2 (ENSCAFG00845015837)	GCLM (ENSCAFG00845015741)	ABCA4 (ENSCAFG00845015579)	ARHGAP29 (ENSCAFG00845015082)	ABCD3 (ENSCAFG00845014838) ##22	F3 (ENSCAFG00845014757)	SLC44A3 (ENSCAFG00845014574)	CNN3 (ENSCAFG00845014488)	ALG14 (ENSCAFG00845014457)	TLCD4 (ENSCAFG00845014422)	RWDD3 (ENSCAFG00845014389)	PTBP2 (ENSCAFG00845014300)	DPYD (ENSCAFG00845014137)	SNX7 (ENSCAFG00845014011)	PLPPR5 (ENSCAFG00845013970)	ENSCAFG00845013954	PLPPR4 (ENSCAFG00845013925)	PALMD (ENSCAFG00845013819)	FRRS1 (ENSCAFG00845013726)	AGL (ENSCAFG00845013603)
Dingo	MODERN SPECIES	172	RPAP2 (ENSCAFG00020013392)	GFI1 (ENSCAFG00020013371)	EVI5 (ENSCAFG00020013278)	ENSCAFG00020013253	DIPK1A (ENSCAFG00020013251)	MTF2 (ENSCAFG00020012737)	TMED5 (ENSCAFG00020012713)	CCDC18 (ENSCAFG00020012641)	DR1 (ENSCAFG00020012625)	FNBP1L (ENSCAFG00020011963)	BCAR3 (ENSCAFG00020011927)	ENSCAFG00020011923	GCLM (ENSCAFG00020011914)	ABCA4 (ENSCAFG00020011889)	ARHGAP29 (ENSCAFG00020011859)	ABCD3 (ENSCAFG00020011849) ##22	F3 (ENSCAFG00020011846)	SLC44A3 (ENSCAFG00020011837)	CNN3 (ENSCAFG00020011835)	ALG14 (ENSCAFG00020011834)	ENSCAFG00020011832	TLCD4 (ENSCAFG00020011831)	RWDD3 (ENSCAFG00020011830)	PTBP2 (ENSCAFG00020011828)	ENSCAFG00020011821	ENSCAFG00020011815	DPYD (ENSCAFG00020011809)	SNX7 (ENSCAFG00020011791)	PLPPR5 (ENSCAFG00020011786)	PLPPR4 (ENSCAFG00020011785)	PALMD (ENSCAFG00020011783)
Red fox	MODERN SPECIES	21	RPAP2 (ENSVVUG00000020839)	ENSVVUG00000020858	EVI5 (ENSVVUG00000020869)	ENSVVUG00000020882	FAM69A (ENSVVUG00000020885)	MTF2 (ENSVVUG00000020888)	TMED5 (ENSVVUG00000021177)	CCDC18 (ENSVVUG00000021186)	DR1 (ENSVVUG00000021225)	FNBP1L (ENSVVUG00000021266)	BCAR3 (ENSVVUG00000021837)	DNTTIP2 (ENSVVUG00000021840)	GCLM (ENSVVUG00000021841)	ABCA4 (ENSVVUG00000021843)	ARHGAP29 (ENSVVUG00000021844)	ABCD3 (ENSVVUG00000021847) ##22	F3 (ENSVVUG00000021851)	SLC44A3 (ENSVVUG00000021857)	CNN3 (ENSVVUG00000021861)	ENSVVUG00000021862	ALG14 (ENSVVUG00000021865)	TLCD4 (ENSVVUG00000021866)	RWDD3 (ENSVVUG00000021868)	PTBP2 (ENSVVUG00000021875)	DPYD (ENSVVUG00000021876)	ENSVVUG00000021883	ENSVVUG00000021884	SNX7 (ENSVVUG00000021892)	PLPPR5 (ENSVVUG00000021896)	ENSVVUG00000021897	PLPPR4 (ENSVVUG00000021899)
Felidae	ANCESTRAL SPECIES	10	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315.i	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Panthera	ANCESTRAL SPECIES	4	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315.i	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315.i	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
lion	MODERN SPECIES	8	GFI1 (ENSPLOG00000006985)	ENSPLOG00000006956	EVI5 (ENSPLOG00000006749)	ENSPLOG00000006609	DIPK1A (ENSPLOG00000006533)	MTF2 (ENSPLOG00000006466)	TMED5 (ENSPLOG00000006419)	CCDC18 (ENSPLOG00000006235)	DR1 (ENSPLOG00000006150)	FNBP1L (ENSPLOG00000006102)	BCAR3 (ENSPLOG00000005986)	DNTTIP2 (ENSPLOG00000005915)	GCLM (ENSPLOG00000005862)	ABCA4 (ENSPLOG00000005665)	ARHGAP29 (ENSPLOG00000005595)	ABCD3 (ENSPLOG00000005397) ##22	F3 (ENSPLOG00000005281)	SLC44A3 (ENSPLOG00000005217)	CNN3 (ENSPLOG00000005152)	ALG14 (ENSPLOG00000005117)	TLCD4 (ENSPLOG00000005103)	RWDD3 (ENSPLOG00000005072)	PTBP2 (ENSPLOG00000005029)	ENSPLOG00000005007	DPYD (ENSPLOG00000004976)	SNX7 (ENSPLOG00000004925)	PLPPR5 (ENSPLOG00000004892)	ENSPLOG00000004816	PLPPR4 (ENSPLOG00000004794)	PALMD (ENSPLOG00000004755)	FRRS1 (ENSPLOG00000004737)
leopard	MODERN SPECIES	31							DR1 (ENSPPRG00000000301)	FNBP1L (ENSPPRG00000000171)	BCAR3 (ENSPPRG00000012781)	ENSPPRG00000012161	GCLM (ENSPPRG00000011183)	ABCA4 (ENSPPRG00000009986)	ARHGAP29 (ENSPPRG00000008434)	ENSPPRG00000007305	ENSPPRG00000006742	ABCD3 (ENSPPRG00000006341) ##22	F3 (ENSPPRG00000005544)	SLC44A3 (ENSPPRG00000004417)	CNN3 (ENSPPRG00000001588)	ENSPPRG00000000638	ALG14 (ENSPPRG00000000480)	TLCD4 (ENSPPRG00000000090)	RWDD3 (ENSPPRG00000022628)	PTBP2 (ENSPPRG00000022912)	DPYD (ENSPPRG00000023415)	ENSPPRG00000015522	PLPPR5 (ENSPPRG00000014564)	PLPPR4 (ENSPPRG00000013789)	PALMD (ENSPPRG00000013067)	FRRS1 (ENSPPRG00000012265)	AGL (ENSPPRG00000011480)
Tiger	MODERN SPECIES	19	RPAP2 (ENSPTIG00000021761)	ENSPTIG00000002680	EVI5 (ENSPTIG00000005019)	ENSPTIG00000007991	DIPK1A (ENSPTIG00000008277)	MTF2 (ENSPTIG00000010490)	TMED5 (ENSPTIG00000013456)	CCDC18 (ENSPTIG00000014221)	DR1 (ENSPTIG00000018611)	FNBP1L (ENSPTIG00000019290)	BCAR3 (ENSPTIG00000007755)	ENSPTIG00000014954	GCLM (ENSPTIG00000015360)	ABCA4 (ENSPTIG00000017238)	ARHGAP29 (ENSPTIG00000003366)	ABCD3 (ENSPTIG00000006742) ##22	F3 (ENSPTIG00000009684)	ENSPTIG00000011044
Cat	MODERN SPECIES	239	GFI1 (ENSFCAG00000005914)	EVI5 (ENSFCAG00000005915)	TCEB2 (ENSFCAG00000026327)	ENSFCAG00000037590	DIPK1A (ENSFCAG00000024680)	MTF2 (ENSFCAG00000015025)	TMED5 (ENSFCAG00000031097)	CCDC18 (ENSFCAG00000015028)	DR1 (ENSFCAG00000012458)	FNBP1L (ENSFCAG00000031485)	BCAR3 (ENSFCAG00000005535)	DNTTIP2 (ENSFCAG00000031703)	GCLM (ENSFCAG00000032882)	ABCA4 (ENSFCAG00000015512)	ARHGAP29 (ENSFCAG00000031621)	ABCD3 (ENSFCAG00000012766) ##22	F3 (ENSFCAG00000012767)	SLC44A3 (ENSFCAG00000015094)	ENSFCAG00000052327	CNN3 (ENSFCAG00000015097)	ENSFCAG00000047866	ALG14 (ENSFCAG00000006021)	TLCD4 (ENSFCAG00000022261)	RWDD3 (ENSFCAG00000028155)	PTBP2 (ENSFCAG00000027655)	DPYD (ENSFCAG00000039421)	SNX7 (ENSFCAG00000028713)	PLPPR5 (ENSFCAG00000001918)	PLPPR4 (ENSFCAG00000029735)	PALMD (ENSFCAG00000001015)	FRRS1 (ENSFCAG00000023493)
Artiodactyla	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Suina	ANCESTRAL SPECIES	32	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.c	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Chacoan peccary	MODERN SPECIES	216	GFI1 (ENSCWAG00000011229)	EVI5 (ENSCWAG00000010914)	ENSCWAG00000010805	DIPK1A (ENSCWAG00000010717)	MTF2 (ENSCWAG00000010620)	TMED5 (ENSCWAG00000010568)	CCDC18 (ENSCWAG00000010526)	DR1 (ENSCWAG00000010484)	FNBP1L (ENSCWAG00000010376)	ENSCWAG00000010352	BCAR3 (ENSCWAG00000010282)	DNTTIP2 (ENSCWAG00000010220)	GCLM (ENSCWAG00000010130)	ABCA4 (ENSCWAG00000008954)	ARHGAP29 (ENSCWAG00000008826)	ABCD3 (ENSCWAG00000008698) ##22	F3 (ENSCWAG00000008610)	SLC44A3 (ENSCWAG00000008028)	CNN3 (ENSCWAG00000007917)	ALG14 (ENSCWAG00000007862)	TLCD4 (ENSCWAG00000007797)	RWDD3 (ENSCWAG00000007768)	ENSCWAG00000007751	PTBP2 (ENSCWAG00000007516)	ENSCWAG00000007473	DPYD (ENSCWAG00000004886)	SNX7 (ENSCWAG00000004827)
Pig	MODERN SPECIES	12	RPAP2 (ENSSSCG00000006903)	GFI1 (ENSSSCG00000006902)	EVI5 (ENSSSCG00000006901)	RPL5 (ENSSSCG00000006899)	DIPK1A (ENSSSCG00000006900)	MTF2 (ENSSSCG00000006898)	TMED5 (ENSSSCG00000040439)	CCDC18 (ENSSSCG00000006897)	DR1 (ENSSSCG00000028310)	FNBP1L (ENSSSCG00000006894)	BCAR3 (ENSSSCG00000006893)	DNTTIP2 (ENSSSCG00000006892)	GCLM (ENSSSCG00000037549)	ABCA4 (ENSSSCG00000006890)	ARHGAP29 (ENSSSCG00000006889)	ABCD3 (ENSSSCG00000028620) ##22	F3 (ENSSSCG00000022447)	SLC44A3 (ENSSSCG00000006888)	CNN3 (ENSSSCG00000006887)	ALG14 (ENSSSCG00000006885)	TLCD4 (ENSSSCG00000039854)	RWDD3 (ENSSSCG00000036509)	ENSSSCG00000047388	ENSSSCG00000006881	PTBP2 (ENSSSCG00000006879)	ENSSSCG00000041080	ENSSSCG00000050401	ENSSSCG00000041339	DPYD (ENSSSCG00000006878)	SNX7 (ENSSSCG00000006877)	PLPPR5 (ENSSSCG00000006876)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Camelidae	ANCESTRAL SPECIES	29	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C.g
Arabian camel	MODERN SPECIES	35	EVI5 (ENSCDRG00005002514)	ENSCDRG00005002404	DIPK1A (ENSCDRG00005002361)	MTF2 (ENSCDRG00005002314)	ENSCDRG00005002283	TMED5 (ENSCDRG00005002264)	CCDC18 (ENSCDRG00005002211)	DR1 (ENSCDRG00005002183)	FNBP1L (ENSCDRG00005002139)	BCAR3 (ENSCDRG00005002103)	DNTTIP2 (ENSCDRG00005002089)	GCLM (ENSCDRG00005002067)	ABCA4 (ENSCDRG00005001970)	ENSCDRG00005001919	ENSCDRG00005001902	ABCD3 (ENSCDRG00005001791) ##22	F3 (ENSCDRG00005001755)	SLC44A3 (ENSCDRG00005001509)	CNN3 (ENSCDRG00005001443)	ALG14 (ENSCDRG00005001410)	TLCD4 (ENSCDRG00005001384)	RWDD3 (ENSCDRG00005001363)	ENSCDRG00005001342	ENSCDRG00005001326	PTBP2 (ENSCDRG00005001247)	DPYD (ENSCDRG00005001178)	SNX7 (ENSCDRG00005001104)	ENSCDRG00005001081	PLPPR5 (ENSCDRG00005001050)	PLPPR4 (ENSCDRG00005001016)	PALMD (ENSCDRG00005000990)
Alpaca	MODERN SPECIES	30																ABCD3 (ENSVPAG00000012590) ##22
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.f	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Cetacea	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.f	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000155028.q.a.c.a.b.b	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT00550000074801.h.a.a	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Odontoceti	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.f	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000155028.q.a.c.a.b.b	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT00550000074801.h.a.a	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.f	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000155028.q.a.c.a.b.b	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT00550000074801.h.a.a	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.f	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00390000018316.b.b.g.a	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000155028.q.a.c.a.b.b	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT00550000074801.h.a.a	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.f	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00390000018316.b.b.g.a	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000155028.q.a.c.a.b.b	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT00550000074801.h.a.a	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704
Beluga whale	MODERN SPECIES	74	GFI1 (ENSDLEG00000018240)	EVI5 (ENSDLEG00000018305)	ENSDLEG00000018375	FAM69A (ENSDLEG00000018413)	MTF2 (ENSDLEG00000018421)	TMED5 (ENSDLEG00000018438)	CCDC18 (ENSDLEG00000018447)	DR1 (ENSDLEG00000018468)	FNBP1L (ENSDLEG00000018478)	BCAR3 (ENSDLEG00000018515)	DNTTIP2 (ENSDLEG00000018555)	GCLM (ENSDLEG00000011520)	ABCA4 (ENSDLEG00000011575)	ARHGAP29 (ENSDLEG00000012019)	ENSDLEG00000012053	ABCD3 (ENSDLEG00000012078) ##22	F3 (ENSDLEG00000012154)	ENSDLEG00000012228	SLC44A3 (ENSDLEG00000012247)	CNN3 (ENSDLEG00000012318)	ALG14 (ENSDLEG00000012338)	TLCD4 (ENSDLEG00000012352)	RWDD3 (ENSDLEG00000012367)	ENSDLEG00000012379	PTBP2 (ENSDLEG00000012392)	DPYD (ENSDLEG00000012422)	ENSDLEG00000012519	SNX7 (ENSDLEG00000012525)	PLPPR5 (ENSDLEG00000012565)	PLPPR4 (ENSDLEG00000012576)	PALMD (ENSDLEG00000012598)
Narwhal	MODERN SPECIES	304	GFI1 (ENSMMNG00015008938)	EVI5 (ENSMMNG00015008827)	ENSMMNG00015008749	DIPK1A (ENSMMNG00015008730)	MTF2 (ENSMMNG00015008697)	TMED5 (ENSMMNG00015008669)	CCDC18 (ENSMMNG00015008563)	DR1 (ENSMMNG00015008503)	FNBP1L (ENSMMNG00015008478)	BCAR3 (ENSMMNG00015008436)	DNTTIP2 (ENSMMNG00015008396)	GCLM (ENSMMNG00015008377)	ABCA4 (ENSMMNG00015008302)	ARHGAP29 (ENSMMNG00015008231)	ENSMMNG00015008219	ABCD3 (ENSMMNG00015008194) ##22	F3 (ENSMMNG00015008161)	ENSMMNG00015008126	SLC44A3 (ENSMMNG00015008016)	CNN3 (ENSMMNG00015007951)	ENSMMNG00015007931	ALG14 (ENSMMNG00015007912)	TLCD4 (ENSMMNG00015007885)	RWDD3 (ENSMMNG00015007872)	ENSMMNG00015007844	PTBP2 (ENSMMNG00015007812)	DPYD (ENSMMNG00015007761)	SNX7 (ENSMMNG00015007692)	PLPPR5 (ENSMMNG00015007645)	PLPPR4 (ENSMMNG00015007597)	PALMD (ENSMMNG00015007555)
Vaquita	MODERN SPECIES		EVI5 (ENSPSNG00000016298)	ENSPSNG00000016777	DIPK1A (ENSPSNG00000016854)	MTF2 (ENSPSNG00000017009)	TMED5 (ENSPSNG00000017114)	CCDC18 (ENSPSNG00000017224)	DR1 (ENSPSNG00000017453)	FNBP1L (ENSPSNG00000017530)	BCAR3 (ENSPSNG00000017672)	DNTTIP2 (ENSPSNG00000017832)	GCLM (ENSPSNG00000017882)	ENSPSNG00000018004	ENSPSNG00000018081	ARHGAP29 (ENSPSNG00000018131)	ENSPSNG00000018194	ABCD3 (ENSPSNG00000018282) ##22	F3 (ENSPSNG00000018418)	ENSPSNG00000018569	SLC44A3 (ENSPSNG00000018692)	CNN3 (ENSPSNG00000019353)	ENSPSNG00000019437	TLCD4 (ENSPSNG00000019476)	RWDD3 (ENSPSNG00000019529)	ENSPSNG00000019555	PTBP2 (ENSPSNG00000019592)	DPYD (ENSPSNG00000019662)	SNX7 (ENSPSNG00000019731)	PLPPR5 (ENSPSNG00000019795)	PLPPR4 (ENSPSNG00000019921)	PALMD (ENSPSNG00000020050)	FRRS1 (ENSPSNG00000020108)
Dolphin	MODERN SPECIES	3619																ABCD3 (ENSTTRG00000008048) ##22	F3 (ENSTTRG00000008081)
Sperm whale	MODERN SPECIES	15	RPAP2 (ENSPCTG00005003192)	GFI1 (ENSPCTG00005003172)	EVI5 (ENSPCTG00005003071)	ENSPCTG00005003033	DIPK1A (ENSPCTG00005003008)	MTF2 (ENSPCTG00005002966)	TMED5 (ENSPCTG00005002942)	CCDC18 (ENSPCTG00005002918)	DR1 (ENSPCTG00005002905)	FNBP1L (ENSPCTG00005002834)	DNTTIP2 (ENSPCTG00005002811)	GCLM (ENSPCTG00005002786)	ENSPCTG00005002771	ABCA4 (ENSPCTG00005002692)	ARHGAP29 (ENSPCTG00005002478)	ABCD3 (ENSPCTG00005002427) ##22	F3 (ENSPCTG00005002402)	ENSPCTG00005002390	ENSPCTG00005002380	SLC44A3 (ENSPCTG00005002326)	ALG14 (ENSPCTG00005002252)	TLCD4 (ENSPCTG00005002209)	RWDD3 (ENSPCTG00005002182)	PTBP2 (ENSPCTG00005002152)	DPYD (ENSPCTG00005002078)	ENSPCTG00005002053	ENSPCTG00005002044	SNX7 (ENSPCTG00005002021)	PLPPR5 (ENSPCTG00005001998)	PLPPR4 (ENSPCTG00005001946)	PALMD (ENSPCTG00005001923)
Blue whale	MODERN SPECIES		GFI1 (ENSBMSG00010000632)	EVI5 (ENSBMSG00010000675)	ENSBMSG00010000785	DIPK1A (ENSBMSG00010000829)	MTF2 (ENSBMSG00010000876)	TMED5 (ENSBMSG00010000894)	CCDC18 (ENSBMSG00010000915)	DR1 (ENSBMSG00010000938)	ENSBMSG00010000952	FNBP1L (ENSBMSG00010000979)	BCAR3 (ENSBMSG00010001032)	DNTTIP2 (ENSBMSG00010001101)	GCLM (ENSBMSG00010001139)	ABCA4 (ENSBMSG00010001205)	ARHGAP29 (ENSBMSG00010001329)	ABCD3 (ENSBMSG00010001367) ##22	F3 (ENSBMSG00010001415)	ENSBMSG00010001479	ENSBMSG00010001493	SLC44A3 (ENSBMSG00010001529)	CNN3 (ENSBMSG00010002004)	ENSBMSG00010002031	TLCD4 (ENSBMSG00010002045)	RWDD3 (ENSBMSG00010002058)	ENSBMSG00010002073	PTBP2 (ENSBMSG00010002088)	ENSBMSG00010002112	ENSBMSG00010002136	ENSBMSG00010002158	SNX7 (ENSBMSG00010002180)	PLPPR5 (ENSBMSG00010002213)
Pecora	ANCESTRAL SPECIES	2	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.f	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Yarkand deer	MODERN SPECIES	12	ENSCHYG00000022310	DIPK1A (ENSCHYG00000022129)	MTF2 (ENSCHYG00000021903)	TMED5 (ENSCHYG00000021812)	ENSCHYG00000021781	CCDC18 (ENSCHYG00000021482)	DR1 (ENSCHYG00000021416)	FNBP1L (ENSCHYG00000021185)	BCAR3 (ENSCHYG00000020643)	ENSCHYG00000020582	DNTTIP2 (ENSCHYG00000020405)	GCLM (ENSCHYG00000020259)	ABCA4 (ENSCHYG00000019784)	ARHGAP29 (ENSCHYG00000019119)	ENSCHYG00000019054	ABCD3 (ENSCHYG00000018726) ##22	F3 (ENSCHYG00000018591)	SLC44A3 (ENSCHYG00000017793)	ENSCHYG00000017595	ALG14 (ENSCHYG00000017480)	TLCD4 (ENSCHYG00000017396)	RWDD3 (ENSCHYG00000017344)	PTBP2 (ENSCHYG00000017120)	ENSCHYG00000017060	DPYD (ENSCHYG00000015871)	ENSCHYG00000015703	ENSCHYG00000015638	ENSCHYG00000015306	PLPPR5 (ENSCHYG00000015124)	PLPPR4 (ENSCHYG00000014836)	PALMD (ENSCHYG00000014736)
Percora_a	ANCESTRAL SPECIES	1	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.f.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Siberian musk deer	MODERN SPECIES	338	ENSMMSG00000020392	EVI5 (ENSMMSG00000019942)	ENSMMSG00000019811	DIPK1A (ENSMMSG00000019720)	ENSMMSG00000019634	TMED5 (ENSMMSG00000019579)	CCDC18 (ENSMMSG00000019556)	ENSMMSG00000019529	FNBP1L (ENSMMSG00000019419)	BCAR3 (ENSMMSG00000019338)	DNTTIP2 (ENSMMSG00000019293)	GCLM (ENSMMSG00000019242)	ABCA4 (ENSMMSG00000018854)	ARHGAP29 (ENSMMSG00000018746)	ENSMMSG00000018668	ABCD3 (ENSMMSG00000018573) ##22	ENSMMSG00000018539	SLC44A3 (ENSMMSG00000018325)	ENSMMSG00000018185
Bovidae	ANCESTRAL SPECIES	1	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.f.a.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Bovinae	ANCESTRAL SPECIES	1	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.f.a.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b.t	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
American bison	MODERN SPECIES	3325	RPAP2 (ENSBBBG00000022008)	ENSBBBG00000021986	EVI5 (ENSBBBG00000021976)	ENSBBBG00000021904	DIPK1A (ENSBBBG00000005789)	MTF2 (ENSBBBG00000021850)	TMED5 (ENSBBBG00000021744)	CCDC18 (ENSBBBG00000021695)	DR1 (ENSBBBG00000005742)	FNBP1L (ENSBBBG00000021576)	BCAR3 (ENSBBBG00000021483)	DNTTIP2 (ENSBBBG00000021419)	GCLM (ENSBBBG00000021400)	ABCA4 (ENSBBBG00000021372)	ARHGAP29 (ENSBBBG00000005692)	ABCD3 (ENSBBBG00000021258) ##22	F3 (ENSBBBG00000005677)	SLC44A3 (ENSBBBG00000008523)	ENSBBBG00000021099	ALG14 (ENSBBBG00000021053)	TLCD4 (ENSBBBG00000021038)	RWDD3 (ENSBBBG00000021032)	PTBP2 (ENSBBBG00000008574)
Bos	ANCESTRAL SPECIES		ENSGT01100000263480.a.a.a.b.a.b.b.b	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.f.a.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.a.a.b.a.b.a	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.a.a.a.b.b	ENSGT00940000160336	ENSGT00940000154539.b.t	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Bos_b	ANCESTRAL SPECIES	1	ENSGT01100000263480.a.a.a.b.a.b.b.b	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.f.a.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.a.a.b.a.b.a	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.a.a.a.b.b	ENSGT00940000160336	ENSGT00940000154539.b.t	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Cow	MODERN SPECIES	22	GFI1 (ENSBTAG00000016723)	ENSBTAG00000055274	EVI5 (ENSBTAG00000011363)	RPL5 (ENSBTAG00000002026)	DIPK1A (ENSBTAG00000002028)	MTF2 (ENSBTAG00000001393)	TMED5 (ENSBTAG00000020180)	CCDC18 (ENSBTAG00000027321)	DR1 (ENSBTAG00000008737)	FNBP1L (ENSBTAG00000004383)	BCAR3 (ENSBTAG00000003245)	DNTTIP2 (ENSBTAG00000047679)	GCLM (ENSBTAG00000007842)	ABCA4 (ENSBTAG00000018010)	ARHGAP29 (ENSBTAG00000004190)	ABCD3 (ENSBTAG00000009698) ##22	F3 (ENSBTAG00000007101)	SLC44A3 (ENSBTAG00000020344)	CNN3 (ENSBTAG00000020345)	ALG14 (ENSBTAG00000004422)	TLCD4 (ENSBTAG00000044125)	RWDD3 (ENSBTAG00000021537)	PTBP2 (ENSBTAG00000008809)	DPYD (ENSBTAG00000031358)	SNX7 (ENSBTAG00000031461)	PLPPR5 (ENSBTAG00000004591)	PLPPR4 (ENSBTAG00000019031)	PALMD (ENSBTAG00000017655)	FRRS1 (ENSBTAG00000003440)	AGL (ENSBTAG00000006491)	SLC35A3 (ENSBTAG00000012454)
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005008044	DIPK1A (ENSBIXG00005008068)	MTF2 (ENSBIXG00005008140)	TMED5 (ENSBIXG00005008194)	CCDC18 (ENSBIXG00005008266)	ENSBIXG00005000148	ENSBIXG00005008323	DR1 (ENSBIXG00005008340)	FNBP1L (ENSBIXG00005008457)	BCAR3 (ENSBIXG00005008526)	DNTTIP2 (ENSBIXG00005008558)	GCLM (ENSBIXG00005008584)	ABCA4 (ENSBIXG00005008650)	ARHGAP29 (ENSBIXG00005008734)	ENSBIXG00005008777	ABCD3 (ENSBIXG00005005684) ##22	F3 (ENSBIXG00005008830)	ENSBIXG00005008845	SLC44A3 (ENSBIXG00005000318)	ENSBIXG00005005360	ALG14 (ENSBIXG00005005794)	TLCD4 (ENSBIXG00005006088)	RWDD3 (ENSBIXG00005009019)	PTBP2 (ENSBIXG00005009137)	ENSBIXG00005009182	ENSBIXG00005009189	DPYD (ENSBIXG00005000477)	ENSBIXG00005000495	SNX7 (ENSBIXG00005009472)	PLPPR5 (ENSBIXG00005009535)	PLPPR4 (ENSBIXG00005009651)
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.f.a.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.a.a.b.a.b.a	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT01100000263480.a.b.b.a.b.b.b.b.b.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.a.a.a.b.b	ENSGT00940000160336	ENSGT00940000154539.b.t	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954
Wild yak	MODERN SPECIES	2282														ARHGAP29 (ENSBMUG00000026280)	ENSBMUG00000026281	ABCD3 (ENSBMUG00000026290) ##22	F3 (ENSBMUG00000026293)	SLC44A3 (ENSBMUG00000026298)	CNN3 (ENSBMUG00000026303)	ALG14 (ENSBMUG00000026306)	TLCD4 (ENSBMUG00000026308)	RWDD3 (ENSBMUG00000026311)
Domestic yak	MODERN SPECIES	22	MTF2 (ENSBGRG00000000957)	TMED5 (ENSBGRG00000000898)	ENSBGRG00000000890	CCDC18 (ENSBGRG00000000861)	ENSBGRG00000000851	DR1 (ENSBGRG00000000843)	FNBP1L (ENSBGRG00000000657)	BCAR3 (ENSBGRG00000000591)	ENSBGRG00000000572	DNTTIP2 (ENSBGRG00000000534)	GCLM (ENSBGRG00000000503)	ABCA4 (ENSBGRG00000000369)	ARHGAP29 (ENSBGRG00000000321)	ENSBGRG00000000295	ENSBGRG00000000287	ABCD3 (ENSBGRG00000000245) ##22	F3 (ENSBGRG00000000221)	ENSBGRG00000000201	SLC44A3 (ENSBGRG00000016590)	ENSBGRG00000016412	ALG14 (ENSBGRG00000016310)	TLCD4 (ENSBGRG00000016247)	RWDD3 (ENSBGRG00000016161)	PDE4DIP (ENSBGRG00000013976)	ENSBGRG00000013889	ENSBGRG00000013856	SEC22B (ENSBGRG00000013753)	NOTCH2 (ENSBGRG00000013357)	ENSBGRG00000013234	ENSBGRG00000013175	REG4 (ENSBGRG00000013043)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.f.a.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Rambouillet Sheep	MODERN SPECIES		EVI5 (ENSOARG00020009564)	DIPK1A (ENSOARG00020010425)	MTF2 (ENSOARG00020010785)	ENSOARG00020011067	TMED5 (ENSOARG00020011102)	CCDC18 (ENSOARG00020011193)	DR1 (ENSOARG00020011400)	ENSOARG00020011450	ENSOARG00020011468	FNBP1L (ENSOARG00020011503)	BCAR3 (ENSOARG00020011724)	DNTTIP2 (ENSOARG00020011971)	GCLM (ENSOARG00020012157)	ABCA4 (ENSOARG00020000200)	ARHGAP29 (ENSOARG00020000343)	ABCD3 (ENSOARG00020000390) ##22	F3 (ENSOARG00020000473)	SLC44A3 (ENSOARG00020000556)	CNN3 (ENSOARG00020001067)	ALG14 (ENSOARG00020001092)	TLCD4 (ENSOARG00020001102)	RWDD3 (ENSOARG00020001116)	PTBP2 (ENSOARG00020001140)	DPYD (ENSOARG00020001219)	ENSOARG00020001504	SNX7 (ENSOARG00020001545)	PLPPR5 (ENSOARG00020001612)	ENSOARG00020001644	PLPPR4 (ENSOARG00020001662)	PALMD (ENSOARG00020001716)	FRRS1 (ENSOARG00020001745)
Goat	MODERN SPECIES	22	RPAP2 (ENSCHIG00000019522)	GFI1 (ENSCHIG00000016135)	EVI5 (ENSCHIG00000026426)	ENSCHIG00000015380	DIPK1A (ENSCHIG00000020350)	MTF2 (ENSCHIG00000024099)	TMED5 (ENSCHIG00000016065)	CCDC18 (ENSCHIG00000008731)	DR1 (ENSCHIG00000020958)	FNBP1L (ENSCHIG00000014859)	BCAR3 (ENSCHIG00000002020)	DNTTIP2 (ENSCHIG00000009770)	GCLM (ENSCHIG00000025257)	ABCA4 (ENSCHIG00000021104)	ARHGAP29 (ENSCHIG00000011428)	ABCD3 (ENSCHIG00000023422) ##22	F3 (ENSCHIG00000019946)	SLC44A3 (ENSCHIG00000025875)	CNN3 (ENSCHIG00000022213)	ALG14 (ENSCHIG00000011527)	TLCD4 (ENSCHIG00000024345)	RWDD3 (ENSCHIG00000012406)	PTBP2 (ENSCHIG00000024922)	DPYD (ENSCHIG00000016223)	ENSCHIG00000026469	ENSCHIG00000017438	ENSCHIG00000010564	PLPPR5 (ENSCHIG00000025970)	PLPPR4 (ENSCHIG00000010024)	PALMD (ENSCHIG00000026003)	FRRS1 (ENSCHIG00000026886)
Eulipotyphla	ANCESTRAL SPECIES	1009																ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668
Hedgehog	MODERN SPECIES	1916																ENSEEUG00000004156 ##22	F3 (ENSEEUG00000004381)
Common shrew	MODERN SPECIES	5965																ABCD3 (ENSSARG00000011050) ##22	F3 (ENSSARG00000011076)
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Primates	ANCESTRAL SPECIES	4	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000182965.a.b.b.b.g.b.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A.f	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b.db	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00940000157395
Cebidae	ANCESTRAL SPECIES	1	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000182965.a.b.b.b.g.b.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A.f	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b.db	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00940000157395
Cebidae_a	ANCESTRAL SPECIES	81	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000182965.a.b.b.b.g.b.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A.f	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b.db	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00390000000950.c.a.o.b
Capuchin	MODERN SPECIES	630																ABCD3 (ENSCCAG00000026275) ##22	F3 (ENSCCAG00000026754)	SLC44A3 (ENSCCAG00000024835)	ENSCCAG00000024125	ENSCCAG00000026303	ALG14 (ENSCCAG00000021631)
Bolivian squirrel monkey	MODERN SPECIES	97	EVI5 (ENSSBOG00000021898)	DIPK1A (ENSSBOG00000020486)	MTF2 (ENSSBOG00000021350)	TMED5 (ENSSBOG00000034141)	CCDC18 (ENSSBOG00000025896)	DR1 (ENSSBOG00000021041)	FNBP1L (ENSSBOG00000026856)	BCAR3 (ENSSBOG00000020011)	DNTTIP2 (ENSSBOG00000030305)	GCLM (ENSSBOG00000025418)	ENSSBOG00000019384	ABCA4 (ENSSBOG00000016235)	ARHGAP29 (ENSSBOG00000021522)	ENSSBOG00000018533	ENSSBOG00000024603	ABCD3 (ENSSBOG00000034744) ##22	F3 (ENSSBOG00000035506)	SLC44A3 (ENSSBOG00000021672)	ENSSBOG00000028324	ALG14 (ENSSBOG00000022812)	TLCD4 (ENSSBOG00000021328)	RWDD3 (ENSSBOG00000031332)	PTBP2 (ENSSBOG00000029258)	DPYD (ENSSBOG00000020116)	SNX7 (ENSSBOG00000033097)	PLPPR5 (ENSSBOG00000026735)	ENSSBOG00000024909	PLPPR4 (ENSSBOG00000034038)	PALMD (ENSSBOG00000031543)	FRRS1 (ENSSBOG00000028387)	ENSSBOG00000028465
Marmoset	MODERN SPECIES	19	ENSCJAG00000014949	ENSCJAG00000076513	ENSCJAG00000017673	DIPK1A (ENSCJAG00000017678)	ENSCJAG00000022564	MTF2 (ENSCJAG00000017687)	TMED5 (ENSCJAG00000017759)	CCDC18 (ENSCJAG00000017774)	FNBP1L (ENSCJAG00000017821)	BCAR3 (ENSCJAG00000017873)	DNTTIP2 (ENSCJAG00000017896)	GCLM (ENSCJAG00000017899)	ABCA4 (ENSCJAG00000017910)	ARHGAP29 (ENSCJAG00000018008)	ENSCJAG00000081033	ABCD3 (ENSCJAG00000018054) ##22	ENSCJAG00000018108	ENSCJAG00000081383	ENSCJAG00000080040	ENSCJAG00000076851	SLC44A3 (ENSCJAG00000018117)	CNN3 (ENSCJAG00000018128)	ALG14 (ENSCJAG00000058282)	TLCD4 (ENSCJAG00000018153)	RWDD3 (ENSCJAG00000018158)	ENSCJAG00000075424	PTBP2 (ENSCJAG00000018172)	DPYD (ENSCJAG00000018179)	ENSCJAG00000078566	SNX7 (ENSCJAG00000018195)	PLPPR5 (ENSCJAG00000018231)
Mas night monkey	MODERN SPECIES	373																ABCD3 (ENSANAG00000025685) ##22	F3 (ENSANAG00000023914)	ENSANAG00000021286	SLC44A3 (ENSANAG00000024088)	CNN3 (ENSANAG00000035408)	ALG14 (ENSANAG00000022314)	TLCD4 (ENSANAG00000023248)	ENSANAG00000023277	RWDD3 (ENSANAG00000033589)	PTBP2 (ENSANAG00000033752)	DPYD (ENSANAG00000036723)	ENSANAG00000029925	SNX7 (ENSANAG00000029255)	PLPPR5 (ENSANAG00000034408)	PLPPR4 (ENSANAG00000028786)	PALMD (ENSANAG00000026307)
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142.j	ENSGT00510000048142.i	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142.j	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315.m	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Hominidae	ANCESTRAL SPECIES	3	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142.j	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315.m	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142.j	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT00950000183029.B.c.a.r	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315.m	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Gorilla	MODERN SPECIES		GFI1 (ENSGGOG00000005320)	EVI5 (ENSGGOG00000024347)	RPL5 (ENSGGOG00000002699)	DIPK1A (ENSGGOG00000000881)	ENSGGOG00000043223	MTF2 (ENSGGOG00000001308)	TMED5 (ENSGGOG00000016111)	CCDC18 (ENSGGOG00000016744)	DR1 (ENSGGOG00000028511)	FNBP1L (ENSGGOG00000015943)	BCAR3 (ENSGGOG00000001635)	DNTTIP2 (ENSGGOG00000000575)	GCLM (ENSGGOG00000016426)	ABCA4 (ENSGGOG00000008804)	ARHGAP29 (ENSGGOG00000002269)	ABCD3 (ENSGGOG00000009815) ##22	F3 (ENSGGOG00000014683)	SLC44A3 (ENSGGOG00000013852)	CNN3 (ENSGGOG00000013870)	ALG14 (ENSGGOG00000004834)	TLCD4 (ENSGGOG00000023436)	RWDD3 (ENSGGOG00000024263)	ENSGGOG00000042721	PTBP2 (ENSGGOG00000000659)	ENSGGOG00000041430	ENSGGOG00000024435	ENSGGOG00000037574	ENSGGOG00000040450	SNX7 (ENSGGOG00000023577)	PLPPR5 (ENSGGOG00000007608)	PLPPR4 (ENSGGOG00000013487)
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142.j	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT00950000183029.B.c.a.r	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315.m	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Pan	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142.j	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT00950000183029.B.c.a.r	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315.m	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Bonobo	MODERN SPECIES		RPAP2 (ENSPPAG00000035306)	GFI1 (ENSPPAG00000042186)	EVI5 (ENSPPAG00000034071)	RPL5 (ENSPPAG00000027174)	DIPK1A (ENSPPAG00000043970)	MTF2 (ENSPPAG00000030002)	TMED5 (ENSPPAG00000027553)	CCDC18 (ENSPPAG00000029331)	DR1 (ENSPPAG00000027265)	FNBP1L (ENSPPAG00000029809)	BCAR3 (ENSPPAG00000029140)	DNTTIP2 (ENSPPAG00000044098)	GCLM (ENSPPAG00000042369)	ABCA4 (ENSPPAG00000035606)	ARHGAP29 (ENSPPAG00000020199)	ABCD3 (ENSPPAG00000039827) ##22	F3 (ENSPPAG00000033102)	SLC44A3 (ENSPPAG00000038864)	CNN3 (ENSPPAG00000027625)	ALG14 (ENSPPAG00000040936)	TLCD4 (ENSPPAG00000041461)	RWDD3 (ENSPPAG00000027405)	ENSPPAG00000034735	PTBP2 (ENSPPAG00000039951)	DPYD (ENSPPAG00000041846)	ENSPPAG00000009141	SNX7 (ENSPPAG00000031045)	PLPPR5 (ENSPPAG00000035265)	PLPPR4 (ENSPPAG00000026148)	PALMD (ENSPPAG00000041250)	FRRS1 (ENSPPAG00000038944)
Chimpanzee	MODERN SPECIES		RPAP2 (ENSPTRG00000000960)	GFI1 (ENSPTRG00000043053)	EVI5 (ENSPTRG00000000962)	RPL5 (ENSPTRG00000000963)	DIPK1A (ENSPTRG00000000964)	MTF2 (ENSPTRG00000000965)	TMED5 (ENSPTRG00000000966)	CCDC18 (ENSPTRG00000000967)	DR1 (ENSPTRG00000000969)	FNBP1L (ENSPTRG00000000970)	BCAR3 (ENSPTRG00000000971)	DNTTIP2 (ENSPTRG00000000972)	GCLM (ENSPTRG00000000973)	ABCA4 (ENSPTRG00000023377)	ARHGAP29 (ENSPTRG00000000975)	ABCD3 (ENSPTRG00000000976) ##22	F3 (ENSPTRG00000000977)	SLC44A3 (ENSPTRG00000000978)	CNN3 (ENSPTRG00000000979)	ALG14 (ENSPTRG00000000980)	TLCD4 (ENSPTRG00000000981)	RWDD3 (ENSPTRG00000000984)	PTBP2 (ENSPTRG00000000987)	DPYD (ENSPTRG00000000990)	SNX7 (ENSPTRG00000000992)	PLPPR5 (ENSPTRG00000000993)	PLPPR4 (ENSPTRG00000000994)	PALMD (ENSPTRG00000000995)	FRRS1 (ENSPTRG00000000996)	AGL (ENSPTRG00000000997)	MFSD14A (ENSPTRG00000000999)
Human	MODERN SPECIES		RPAP2 (ENSG00000122484)	GFI1 (ENSG00000162676)	EVI5 (ENSG00000067208)	RPL5 (ENSG00000122406)	DIPK1A (ENSG00000154511)	MTF2 (ENSG00000143033)	TMED5 (ENSG00000117500)	CCDC18 (ENSG00000122483)	DR1 (ENSG00000117505)	FNBP1L (ENSG00000137942)	BCAR3 (ENSG00000137936)	DNTTIP2 (ENSG00000067334)	GCLM (ENSG00000023909)	ABCA4 (ENSG00000198691)	ARHGAP29 (ENSG00000137962)	ABCD3 (ENSG00000117528) ##22	F3 (ENSG00000117525)	SLC44A3 (ENSG00000143036)	CNN3 (ENSG00000117519)	ALG14 (ENSG00000172339)	TLCD4 (ENSG00000152078)	TLCD4-RWDD3 (ENSG00000271092)	RWDD3 (ENSG00000122481)	PTBP2 (ENSG00000117569)	DPYD (ENSG00000188641)	SNX7 (ENSG00000162627)	PLPPR5 (ENSG00000117598)	PLPPR4 (ENSG00000117600)	PALMD (ENSG00000099260)	FRRS1 (ENSG00000156869)	AGL (ENSG00000162688)
Orangutan	MODERN SPECIES		RPAP2 (ENSPPYG00000001154)	GFI1 (ENSPPYG00000029385)	EVI5 (ENSPPYG00000001153)	RPL5 (ENSPPYG00000001152)	DIPK1A (ENSPPYG00000001151)	MTF2 (ENSPPYG00000001150)	TMED5 (ENSPPYG00000030133)	CCDC18 (ENSPPYG00000001148)	DR1 (ENSPPYG00000001147)	FNBP1L (ENSPPYG00000001146)	BCAR3 (ENSPPYG00000001145)	DNTTIP2 (ENSPPYG00000030204)	GCLM (ENSPPYG00000032580)	ABCA4 (ENSPPYG00000001142)	ARHGAP29 (ENSPPYG00000001141)	ABCD3 (ENSPPYG00000001140) ##22	F3 (ENSPPYG00000001139)	SLC44A3 (ENSPPYG00000001138)	CNN3 (ENSPPYG00000001137)	ALG14 (ENSPPYG00000001136)	TLCD4 (ENSPPYG00000001135)	RWDD3 (ENSPPYG00000001134)	ENSPPYG00000004339	PTBP2 (ENSPPYG00000001132)	ENSPPYG00000034329	DPYD (ENSPPYG00000001131)	SNX7 (ENSPPYG00000001129)	PLPPR5 (ENSPPYG00000001128)	PLPPR4 (ENSPPYG00000001127)	PALMD (ENSPPYG00000001126)	FRRS1 (ENSPPYG00000001125)
Gibbon	MODERN SPECIES	2	GFI1 (ENSNLEG00000010470)	EVI5 (ENSNLEG00000010486)	RPL5 (ENSNLEG00000010500)	DIPK1A (ENSNLEG00000010507)	ENSNLEG00000032162	MTF2 (ENSNLEG00000010513)	TMED5 (ENSNLEG00000010590)	CCDC18 (ENSNLEG00000010606)	DR1 (ENSNLEG00000010667)	FNBP1L (ENSNLEG00000010681)	BCAR3 (ENSNLEG00000010748)	DNTTIP2 (ENSNLEG00000010816)	GCLM (ENSNLEG00000010871)	ABCA4 (ENSNLEG00000010897)	ARHGAP29 (ENSNLEG00000010961)	ABCD3 (ENSNLEG00000011044) ##22	F3 (ENSNLEG00000011112)	SLC44A3 (ENSNLEG00000011128)	CNN3 (ENSNLEG00000030129)	ALG14 (ENSNLEG00000011233)	TLCD4 (ENSNLEG00000011246)	RWDD3 (ENSNLEG00000027153)	PTBP2 (ENSNLEG00000011253)	DPYD (ENSNLEG00000011315)	ENSNLEG00000028665	SNX7 (ENSNLEG00000011393)	PLPPR5 (ENSNLEG00000011435)	PLPPR4 (ENSNLEG00000011445)	ENSNLEG00000028674	PALMD (ENSNLEG00000011466)	ENSNLEG00000011491
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142.i	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142.i	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142.i.a	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Macaca	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142.i.a	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00510000047505.c.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142.i.a	ENSGT00510000047658	ENSGT01100000264112.a.b	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT01100000263539.b.b.b.b.a.a.a.a.b	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Crab-eating macaque	MODERN SPECIES		DIPK1A (ENSMFAG00000000290)	ENSMFAG00000030382	MTF2 (ENSMFAG00000037684)	TMED5 (ENSMFAG00000039021)	CCDC18 (ENSMFAG00000033283)	ENSMFAG00000048042	DR1 (ENSMFAG00000036672)	FNBP1L (ENSMFAG00000007905)	BCAR3 (ENSMFAG00000045481)	ENSMFAG00000042490	ENSMFAG00000003472	GCLM (ENSMFAG00000036066)	ENSMFAG00000054460	ABCA4 (ENSMFAG00000032139)	ARHGAP29 (ENSMFAG00000043826)	ABCD3 (ENSMFAG00000044222) ##22	F3 (ENSMFAG00000041937)	ENSMFAG00000060667	ENSMFAG00000064541	SLC44A3 (ENSMFAG00000030266)	TLCD4 (ENSMFAG00000037599)	CNN3 (ENSMFAG00000043860)	RWDD3 (ENSMFAG00000013715)	PTBP2 (ENSMFAG00000008183)	ENSMFAG00000048003	DPYD (ENSMFAG00000033409)	SNX7 (ENSMFAG00000028542)	PLPPR5 (ENSMFAG00000040875)	PLPPR4 (ENSMFAG00000045185)	PALMD (ENSMFAG00000001331)	FRRS1 (ENSMFAG00000036089)
Rhesus	MODERN SPECIES		MTF2 (ENSMMUG00000016808)	TMED5 (ENSMMUG00000045421)	ENSMMUG00000061598	CCDC18 (ENSMMUG00000016812)	FNBP1L (ENSMMUG00000015922)	BCAR3 (ENSMMUG00000015924)	ENSMMUG00000057430	ENSMMUG00000045959	ENSMMUG00000058244	DNTTIP2 (ENSMMUG00000008435)	GCLM (ENSMMUG00000013857)	ENSMMUG00000062580	ABCA4 (ENSMMUG00000013858)	ARHGAP29 (ENSMMUG00000006369)	ENSMMUG00000053915	ABCD3 (ENSMMUG00000014013) ##22	F3 (ENSMMUG00000056548)	ENSMMUG00000053221	SLC44A3 (ENSMMUG00000001686)	CNN3 (ENSMMUG00000001690)	TLCD4 (ENSMMUG00000004758)	PTBP2 (ENSMMUG00000016130)	ENSMMUG00000054681	DPYD (ENSMMUG00000020726)	SNX7 (ENSMMUG00000008515)	ENSMMUG00000056439	PLPPR5 (ENSMMUG00000008518)	PLPPR4 (ENSMMUG00000021030)	PALMD (ENSMMUG00000016335)	FRRS1 (ENSMMUG00000016388)	AGL (ENSMMUG00000021441)
Pig-tailed macaque	MODERN SPECIES	119	EVI5 (ENSMNEG00000015327)	DIPK1A (ENSMNEG00000030760)	ENSMNEG00000044138	ENSMNEG00000030641	MTF2 (ENSMNEG00000007161)	TMED5 (ENSMNEG00000035141)	CCDC18 (ENSMNEG00000038359)	DR1 (ENSMNEG00000028696)	FNBP1L (ENSMNEG00000043720)	BCAR3 (ENSMNEG00000039069)	ENSMNEG00000015935	ENSMNEG00000041699	GCLM (ENSMNEG00000044117)	ABCA4 (ENSMNEG00000032250)	ARHGAP29 (ENSMNEG00000032154)	ABCD3 (ENSMNEG00000032671) ##22	F3 (ENSMNEG00000032837)	ENSMNEG00000016707	SLC44A3 (ENSMNEG00000035323)	CNN3 (ENSMNEG00000038784)	ALG14 (ENSMNEG00000040144)	TLCD4 (ENSMNEG00000038599)	RWDD3 (ENSMNEG00000035030)	PTBP2 (ENSMNEG00000040081)	DPYD (ENSMNEG00000028972)	SNX7 (ENSMNEG00000030917)	PLPPR5 (ENSMNEG00000007828)	PLPPR4 (ENSMNEG00000027864)	PALMD (ENSMNEG00000031853)	FRRS1 (ENSMNEG00000034998)	AGL (ENSMNEG00000033444)
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142.i.a	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00620000089388	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Olive baboon	MODERN SPECIES		ENSPANG00000043375	ENSPANG00000007198	MTF2 (ENSPANG00000021262)	TMED5 (ENSPANG00000009369)	CCDC18 (ENSPANG00000000782)	ENSPANG00000050304	DR1 (ENSPANG00000030741)	FNBP1L (ENSPANG00000021911)	BCAR3 (ENSPANG00000003121)	ENSPANG00000016856	ENSPANG00000013362	GCLM (ENSPANG00000018022)	ABCA4 (ENSPANG00000005744)	ARHGAP29 (ENSPANG00000018247)	F3 (ENSPANG00000012475)	ABCD3 (ENSPANG00000008108) ##22	ENSPANG00000032578	SLC44A3 (ENSPANG00000015206)	CNN3 (ENSPANG00000013361)	TLCD4 (ENSPANG00000001040)	ENSPANG00000048456	RWDD3 (ENSPANG00000014369)	ENSPANG00000048578	PTBP2 (ENSPANG00000001229)	DPYD (ENSPANG00000001230)	SNX7 (ENSPANG00000013360)	PLPPR5 (ENSPANG00000004611)	ENSPANG00000040457	PLPPR4 (ENSPANG00000006691)	PALMD (ENSPANG00000007599)	FRRS1 (ENSPANG00000013359)
Cercopithecinae_d	ANCESTRAL SPECIES	127	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142.i.a	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000153503.a.b	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b
Drill	MODERN SPECIES	1067							DR1 (ENSMLEG00000011671)	FNBP1L (ENSMLEG00000039228)	BCAR3 (ENSMLEG00000036260)	ENSMLEG00000028620	ENSMLEG00000041327	GCLM (ENSMLEG00000035725)	ENSMLEG00000033458	ABCA4 (ENSMLEG00000029658)	ARHGAP29 (ENSMLEG00000033139)	ABCD3 (ENSMLEG00000021786) ##22	F3 (ENSMLEG00000029893)	ENSMLEG00000041660	SLC44A3 (ENSMLEG00000036163)	CNN3 (ENSMLEG00000038151)	ENSMLEG00000016533	ALG14 (ENSMLEG00000039772)	TLCD4 (ENSMLEG00000038475)	RWDD3 (ENSMLEG00000000097)	ENSMLEG00000037902	PTBP2 (ENSMLEG00000031749)
Sooty mangabey	MODERN SPECIES	146	ENSCATG00000041152	EVI5 (ENSCATG00000038124)	RPL5 (ENSCATG00000040807)	DIPK1A (ENSCATG00000042332)	MTF2 (ENSCATG00000042583)	TMED5 (ENSCATG00000045099)	CCDC18 (ENSCATG00000007601)	DR1 (ENSCATG00000032935)	FNBP1L (ENSCATG00000022281)	BCAR3 (ENSCATG00000035554)	ENSCATG00000036773	GCLM (ENSCATG00000044922)	ENSCATG00000045214	ABCA4 (ENSCATG00000012953)	ARHGAP29 (ENSCATG00000037934)	ABCD3 (ENSCATG00000036231) ##22	F3 (ENSCATG00000035768)	ENSCATG00000029532	SLC44A3 (ENSCATG00000037491)	CNN3 (ENSCATG00000041993)	ALG14 (ENSCATG00000044975)	TLCD4 (ENSCATG00000034099)	RWDD3 (ENSCATG00000036550)	PTBP2 (ENSCATG00000039005)
Vervet Monkey	MODERN SPECIES	12	ENSCSAG00000000156	EVI5 (ENSCSAG00000001470)	ENSCSAG00000001471	DIPK1A (ENSCSAG00000001472)	MTF2 (ENSCSAG00000001474)	TMED5 (ENSCSAG00000001475)	CCDC18 (ENSCSAG00000001476)	DR1 (ENSCSAG00000001477)	FNBP1L (ENSCSAG00000001478)	BCAR3 (ENSCSAG00000001479)	ENSCSAG00000000157	ENSCSAG00000001480	GCLM (ENSCSAG00000001481)	ABCA4 (ENSCSAG00000001482)	ARHGAP29 (ENSCSAG00000001483)	ABCD3 (ENSCSAG00000001484) ##22	F3 (ENSCSAG00000001485)	SLC44A3 (ENSCSAG00000001486)	CNN3 (ENSCSAG00000001487)	ALG14 (ENSCSAG00000001488)	ENSCSAG00000001489	TLCD4 (ENSCSAG00000001490)	RWDD3 (ENSCSAG00000001491)	ENSCSAG00000001493	PTBP2 (ENSCSAG00000001494)	DPYD (ENSCSAG00000001495)	SNX7 (ENSCSAG00000001496)	PLPPR5 (ENSCSAG00000001497)	PLPPR4 (ENSCSAG00000001498)	PALMD (ENSCSAG00000001499)	ENSCSAG00000001500
Rhinopithecus	ANCESTRAL SPECIES	212		ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.b.a.a	ENSGT00390000006452.b.b	ENSGT00940000165912.a	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142.i	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000153503.a.b	ENSGT00390000008751.b	ENSGT00390000018085.a.a.b.f	ENSGT00940000158469	ENSGT00940000154661.b	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954
Golden snub-nosed monkey	MODERN SPECIES	2514		ENSRROG00000040463	RPL5 (ENSRROG00000002878)	DIPK1A (ENSRROG00000029635)	ENSRROG00000035510	MTF2 (ENSRROG00000031267)	TMED5 (ENSRROG00000043857)	CCDC18 (ENSRROG00000035898)	DR1 (ENSRROG00000035147)	FNBP1L (ENSRROG00000034278)	BCAR3 (ENSRROG00000039810)	ENSRROG00000026979	GCLM (ENSRROG00000042983)	ABCA4 (ENSRROG00000034688)	ARHGAP29 (ENSRROG00000040986)	ABCD3 (ENSRROG00000040711) ##22	F3 (ENSRROG00000028240)	SLC44A3 (ENSRROG00000043718)	CNN3 (ENSRROG00000030641)	ALG14 (ENSRROG00000029069)	TLCD4 (ENSRROG00000044998)	RWDD3 (ENSRROG00000041369)	ENSRROG00000029012
Black snub-nosed monkey	MODERN SPECIES	627										FNBP1L (ENSRBIG00000041033)	BCAR3 (ENSRBIG00000031433)	ENSRBIG00000029381	GCLM (ENSRBIG00000038929)	ABCA4 (ENSRBIG00000038065)	ARHGAP29 (ENSRBIG00000014610)	ABCD3 (ENSRBIG00000036006) ##22	F3 (ENSRBIG00000011187)	ENSRBIG00000032973	SLC44A3 (ENSRBIG00000038547)	CNN3 (ENSRBIG00000036130)	ALG14 (ENSRBIG00000043389)	TLCD4 (ENSRBIG00000034902)	RWDD3 (ENSRBIG00000026951)
Tarsier	MODERN SPECIES	7295								DR1 (ENSTSYG00000026585)	ENSTSYG00000027897	FNBP1L (ENSTSYG00000003893)	BCAR3 (ENSTSYG00000012091)	ENSTSYG00000029055	GCLM (ENSTSYG00000004641)	ABCA4 (ENSTSYG00000013310)	ARHGAP29 (ENSTSYG00000002351)	ABCD3 (ENSTSYG00000014307) ##22	F3 (ENSTSYG00000014311)
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Lemuriformes	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315.k	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00940000157395
Lemuriformes_a	ANCESTRAL SPECIES	39	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315.k	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00940000157395
Coquerels sifaka	MODERN SPECIES	846	GFI1 (ENSPCOG00000020540)	ENSPCOG00000023529	EVI5 (ENSPCOG00000013584)	ENSPCOG00000012924	DIPK1A (ENSPCOG00000022059)	MTF2 (ENSPCOG00000021106)	TMED5 (ENSPCOG00000024672)	CCDC18 (ENSPCOG00000021464)	DR1 (ENSPCOG00000025924)	FNBP1L (ENSPCOG00000027233)	BCAR3 (ENSPCOG00000022810)	DNTTIP2 (ENSPCOG00000027395)	GCLM (ENSPCOG00000000314)	ABCA4 (ENSPCOG00000027304)	ARHGAP29 (ENSPCOG00000013337)	ABCD3 (ENSPCOG00000028862) ##22	F3 (ENSPCOG00000024393)	SLC44A3 (ENSPCOG00000017385)	CNN3 (ENSPCOG00000020554)	ALG14 (ENSPCOG00000012538)	TLCD4 (ENSPCOG00000028774)	RWDD3 (ENSPCOG00000028769)	PTBP2 (ENSPCOG00000020071)	ENSPCOG00000019033	DPYD (ENSPCOG00000003302)	ENSPCOG00000021253	PLPPR5 (ENSPCOG00000024493)	PLPPR4 (ENSPCOG00000021059)	PALMD (ENSPCOG00000020583)	FRRS1 (ENSPCOG00000019532)	ENSPCOG00000013222
Greater bamboo lemur	MODERN SPECIES	556	GFI1 (ENSPSMG00000015439)	EVI5 (ENSPSMG00000015410)	ENSPSMG00000015298	DIPK1A (ENSPSMG00000015215)	MTF2 (ENSPSMG00000015020)	TMED5 (ENSPSMG00000014878)	CCDC18 (ENSPSMG00000014808)	DR1 (ENSPSMG00000014696)	ENSPSMG00000014687	FNBP1L (ENSPSMG00000014651)	BCAR3 (ENSPSMG00000014546)	DNTTIP2 (ENSPSMG00000014510)	GCLM (ENSPSMG00000014490)	ABCA4 (ENSPSMG00000014392)	ARHGAP29 (ENSPSMG00000014189)	ABCD3 (ENSPSMG00000013980) ##22	F3 (ENSPSMG00000013868)
Mouse lemur	MODERN SPECIES	11	EVI5 (ENSMICG00000011788)	ENSMICG00000011805	DIPK1A (ENSMICG00000011814)	ENSMICG00000003126	TMED5 (ENSMICG00000000964)	ENSMICG00000043917	ENSMICG00000014932	ENSMICG00000032766	DR1 (ENSMICG00000028249)	FNBP1L (ENSMICG00000035486)	BCAR3 (ENSMICG00000010096)	ENSMICG00000013230	GCLM (ENSMICG00000035919)	ABCA4 (ENSMICG00000013270)	ARHGAP29 (ENSMICG00000016038)	ABCD3 (ENSMICG00000008904) ##22	F3 (ENSMICG00000008919)	ENSMICG00000005431	SLC44A3 (ENSMICG00000008927)	CNN3 (ENSMICG00000008945)	ALG14 (ENSMICG00000037559)	ENSMICG00000029952	TLCD4 (ENSMICG00000014720)	RWDD3 (ENSMICG00000044814)	PTBP2 (ENSMICG00000008543)	DPYD (ENSMICG00000003295)	ENSMICG00000012919	PLPPR5 (ENSMICG00000030430)	PLPPR4 (ENSMICG00000032022)	PALMD (ENSMICG00000007809)	FRRS1 (ENSMICG00000007816)
Bushbaby	MODERN SPECIES	125	GFI1 (ENSOGAG00000027913)	EVI5 (ENSOGAG00000013240)	RPL5 (ENSOGAG00000013246)	DIPK1A (ENSOGAG00000013249)	ENSOGAG00000030106	MTF2 (ENSOGAG00000002432)	TMED5 (ENSOGAG00000015057)	CCDC18 (ENSOGAG00000006059)	DR1 (ENSOGAG00000005967)	FNBP1L (ENSOGAG00000011225)	BCAR3 (ENSOGAG00000011230)	DNTTIP2 (ENSOGAG00000027537)	GCLM (ENSOGAG00000014630)	ABCA4 (ENSOGAG00000014632)	ARHGAP29 (ENSOGAG00000014656)	ABCD3 (ENSOGAG00000009581) ##22	F3 (ENSOGAG00000009588)	ENSOGAG00000031078	SLC44A3 (ENSOGAG00000012495)	CNN3 (ENSOGAG00000012498)	ALG14 (ENSOGAG00000012504)	TLCD4 (ENSOGAG00000002403)	RWDD3 (ENSOGAG00000002405)	ENSOGAG00000033330	PTBP2 (ENSOGAG00000000697)	DPYD (ENSOGAG00000000167)	SNX7 (ENSOGAG00000014579)	ENSOGAG00000031648	PLPPR5 (ENSOGAG00000002763)	PLPPR4 (ENSOGAG00000005399)	PALMD (ENSOGAG00000030570)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Glires	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Rodentia	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Rodentia_B	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.b	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Muroidea	ANCESTRAL SPECIES	6	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00940000164947	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a	ENSGT00950000183027.b	ENSGT00940000156337	ENSGT00530000064570	ENSGT00800000124172	ENSGT00940000155475	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00550000075003	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a	ENSGT00950000183027.b	ENSGT00940000156337	ENSGT00530000064570	ENSGT00800000124172.f	ENSGT00800000124172.e	ENSGT00940000155475	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b.ib.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00550000075003	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a	ENSGT00950000183027.b	ENSGT00940000156337	ENSGT00530000064570	ENSGT00800000124172.f	ENSGT00800000124172.e	ENSGT00940000155475	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b.ib.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Golden Hamster	MODERN SPECIES	685	Mettl14 (ENSMAUG00000014022)	Sec24d (ENSMAUG00000006147)	ENSMAUG00000003052	Myoz2 (ENSMAUG00000005996)	Usp53 (ENSMAUG00000001112)	1810037I17Rik (ENSMAUG00000000301)	Fabp2 (ENSMAUG00000005408)	Pde5a (ENSMAUG00000000342)	Fnbp1l (ENSMAUG00000000261)	Bcar3 (ENSMAUG00000017906)	Dnttip2 (ENSMAUG00000017681)	ENSMAUG00000014976	Abca4 (ENSMAUG00000013300)	ENSMAUG00000016162	Arhgap29 (ENSMAUG00000005936)	Abcd3 (ENSMAUG00000013960) ##22	F3 (ENSMAUG00000009782)	Slc44a3 (ENSMAUG00000011333)	Cnn3 (ENSMAUG00000010251)	ENSMAUG00000000741	ENSMAUG00000000681	Rwdd3 (ENSMAUG00000000095)	Ptbp2 (ENSMAUG00000019011)	Dpyd (ENSMAUG00000016874)	ENSMAUG00000017740	Snx7 (ENSMAUG00000015642)	Plppr5 (ENSMAUG00000016119)	Plppr4 (ENSMAUG00000015134)	4930455H04Rik (ENSMAUG00000014234)	Palmd (ENSMAUG00000000047)	Frrs1 (ENSMAUG00000015585)
Chinese hamster chok1gshd	MODERN SPECIES	66	Mettl14 (ENSCGRG00001019193)	Sec24d (ENSCGRG00001016224)	Synpo2 (ENSCGRG00001020984)	Myoz2 (ENSCGRG00001025062)	Usp53 (ENSCGRG00001017024)	ENSCGRG00001002393	ENSCGRG00001025055	Pde5a (ENSCGRG00001019282)	Fnbp1l (ENSCGRG00001024997)	ENSCGRG00001003069	Bcar3 (ENSCGRG00001014093)	Dnttip2 (ENSCGRG00001014053)	Gclm (ENSCGRG00001009508)	Abca4 (ENSCGRG00001017250)	Arhgap29 (ENSCGRG00001004416)	Abcd3 (ENSCGRG00001022285) ##22	F3 (ENSCGRG00001016638)	Slc44a3 (ENSCGRG00001016222)	Cnn3 (ENSCGRG00001016661)	Alg14 (ENSCGRG00001014685)	Tlcd4 (ENSCGRG00001017280)	Rwdd3 (ENSCGRG00001014186)	Ptbp2 (ENSCGRG00001012478)	ENSCGRG00001020247	ENSCGRG00001009606	Snx7 (ENSCGRG00001013988)	Plppr5 (ENSCGRG00001020652)	Plppr4 (ENSCGRG00001012705)	Palmd (ENSCGRG00001022454)	Frrs1 (ENSCGRG00001014946)	Agl (ENSCGRG00001009759)
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00550000075003	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a	ENSGT00950000183027.b	ENSGT00940000156337	ENSGT00530000064570	ENSGT00800000124172.f	ENSGT00800000124172.e	ENSGT00940000155475	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b.ib.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Northern American deer mouse	MODERN SPECIES	19	Synpo2 (ENSPEMG00000017188)	Myoz2 (ENSPEMG00000011164)	Usp53 (ENSPEMG00000022287)	1810037I17Rik (ENSPEMG00000024687)	ENSPEMG00000027603	ENSPEMG00000029997	Pde5a (ENSPEMG00000021406)	Fnbp1l (ENSPEMG00000021452)	Bcar3 (ENSPEMG00000022437)	ENSPEMG00000025046	Dnttip2 (ENSPEMG00000021990)	Gclm (ENSPEMG00000013091)	ENSPEMG00000020249	Abca4 (ENSPEMG00000017421)	Arhgap29 (ENSPEMG00000015130)	Abcd3 (ENSPEMG00000009790) ##22	F3 (ENSPEMG00000005387)	Slc44a3 (ENSPEMG00000002224)	Cnn3 (ENSPEMG00000000032)	ENSPEMG00000014126	Alg14 (ENSPEMG00000029811)	Tlcd4 (ENSPEMG00000016901)	Rwdd3 (ENSPEMG00000015928)	ENSPEMG00000029523	Ptbp2 (ENSPEMG00000014705)	Dpyd (ENSPEMG00000012380)	Snx7 (ENSPEMG00000009166)	ENSPEMG00000025309	Plppr5 (ENSPEMG00000008752)	Plppr4 (ENSPEMG00000028220)	4930455H04Rik (ENSPEMG00000015603)
Prairie vole	MODERN SPECIES	8	Synpo2 (ENSMOCG00000012146)	Myoz2 (ENSMOCG00000019483)	ENSMOCG00000012858	1810037I17Rik (ENSMOCG00000008059)	ENSMOCG00000002308	ENSMOCG00000000916	Pde5a (ENSMOCG00000000585)	Fnbp1l (ENSMOCG00000010737)	ENSMOCG00000015243	ENSMOCG00000022452	Dnttip2 (ENSMOCG00000020034)	Gclm (ENSMOCG00000001241)	Abca4 (ENSMOCG00000018516)	ENSMOCG00000022147	Arhgap29 (ENSMOCG00000019769)	Abcd3 (ENSMOCG00000011724) ##22	F3 (ENSMOCG00000019703)	Slc44a3 (ENSMOCG00000010033)	Cnn3 (ENSMOCG00000020122)	Alg14 (ENSMOCG00000018262)	Tlcd4 (ENSMOCG00000010826)	Rwdd3 (ENSMOCG00000016942)	Ptbp2 (ENSMOCG00000003216)	Dpyd (ENSMOCG00000019630)	Snx7 (ENSMOCG00000002748)	Plppr5 (ENSMOCG00000002212)	Plppr4 (ENSMOCG00000000579)	Palmd (ENSMOCG00000017830)	Frrs1 (ENSMOCG00000012319)	Agl (ENSMOCG00000005987)	Slc35a3 (ENSMOCG00000006761)
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a	ENSGT00950000183027.b	ENSGT00940000156337	ENSGT00530000064570	ENSGT00800000124172	ENSGT00940000155475	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT01050000248481	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704
Mus	ANCESTRAL SPECIES	7	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a	ENSGT00950000183027.b	ENSGT00940000156337	ENSGT00530000064570	ENSGT00800000124172	ENSGT00940000155475	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT01050000248481	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a	ENSGT00950000183027.b	ENSGT00940000156337	ENSGT00530000064570	ENSGT00800000124172	ENSGT00940000155475	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT01050000248481	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a	ENSGT00950000183027.b	ENSGT00940000156337	ENSGT00530000064570	ENSGT00800000124172	ENSGT00940000155475	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT01050000248481	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a	ENSGT00950000183027.b	ENSGT00940000156337	ENSGT00530000064570	ENSGT00800000124172	ENSGT00940000155475	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT01050000248481	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704
Steppe mouse	MODERN SPECIES	3277												Gclm (ENSMSIG00000016684)	Abca4 (ENSMSIG00000016698)	ENSMSIG00000016910	Arhgap29 (ENSMSIG00000016925)	Abcd3 (ENSMSIG00000017120) ##22	ENSMSIG00000017257	ENSMSIG00000017293	Slc44a3 (ENSMSIG00000017319)	Cnn3 (ENSMSIG00000017369)	Alg14 (ENSMSIG00000017412)	Tlcd4 (ENSMSIG00000017470)	ENSMSIG00000017540	ENSMSIG00000017579	Ptbp2 (ENSMSIG00000017623)	ENSMSIG00000017741
spretus	MODERN SPECIES	12	Prss12 (MGP_SPRETEiJ_G0026556)	Mettl14 (MGP_SPRETEiJ_G0026555)	Sec24d (MGP_SPRETEiJ_G0026554)	Synpo2 (MGP_SPRETEiJ_G0026553)	Myoz2 (MGP_SPRETEiJ_G0026552)	Usp53 (MGP_SPRETEiJ_G0026551)	1810037I17Rik (MGP_SPRETEiJ_G0026550)	MGP_SPRETEiJ_G0026549	Fabp2 (MGP_SPRETEiJ_G0026548)	Pde5a (MGP_SPRETEiJ_G0026547)	Fnbp1l (MGP_SPRETEiJ_G0026546)	Dnttip2 (MGP_SPRETEiJ_G0026544)	Gclm (MGP_SPRETEiJ_G0026543)	Abca4 (MGP_SPRETEiJ_G0026542)	Arhgap29 (MGP_SPRETEiJ_G0026541)	Abcd3 (MGP_SPRETEiJ_G0026540) ##22	MGP_SPRETEiJ_G0026539	MGP_SPRETEiJ_G0026538	Slc44a3 (MGP_SPRETEiJ_G0026537)	Cnn3 (MGP_SPRETEiJ_G0026536)	Alg14 (MGP_SPRETEiJ_G0026535)	Tlcd4 (MGP_SPRETEiJ_G0026534)	MGP_SPRETEiJ_G0026533	Ptbp2 (MGP_SPRETEiJ_G0026532)	Dpyd (MGP_SPRETEiJ_G0026531)	Snx7 (MGP_SPRETEiJ_G0026529)	Plppr5 (MGP_SPRETEiJ_G0026528)	Plppr4 (MGP_SPRETEiJ_G0026527)	4930455H04Rik (MGP_SPRETEiJ_G0026526)	Palmd (MGP_SPRETEiJ_G0026525)	MGP_SPRETEiJ_G0026524
Mouse	MODERN SPECIES	12	Prss12 (ENSMUSG00000027978)	Mettl14 (ENSMUSG00000028114)	Sec24d (ENSMUSG00000039234)	Synpo2 (ENSMUSG00000050315)	Myoz2 (ENSMUSG00000028116)	Usp53 (ENSMUSG00000039701)	1810037I17Rik (ENSMUSG00000054091)	Fabp2 (ENSMUSG00000023057)	Pde5a (ENSMUSG00000053965)	Fnbp1l (ENSMUSG00000039735)	Bcar3 (ENSMUSG00000028121)	Dnttip2 (ENSMUSG00000039756)	Gclm (ENSMUSG00000028124)	Abca4 (ENSMUSG00000028125)	Arhgap29 (ENSMUSG00000039831)	Abcd3 (ENSMUSG00000028127) ##22	F3 (ENSMUSG00000028128)	Slc44a3 (ENSMUSG00000039865)	Cnn3 (ENSMUSG00000053931)	Alg14 (ENSMUSG00000039887)	Tlcd4 (ENSMUSG00000028132)	Rwdd3 (ENSMUSG00000028133)	Ptbp2 (ENSMUSG00000028134)	Dpyd (ENSMUSG00000033308)	Snx7 (ENSMUSG00000028007)	Plppr5 (ENSMUSG00000033342)	Plppr4 (ENSMUSG00000044667)	4930455H04Rik (ENSMUSG00000080907)	Palmd (ENSMUSG00000033377)	Frrs1 (ENSMUSG00000033386)	Agl (ENSMUSG00000033400)
Ryukyu mouse	MODERN SPECIES	12	Ndst3 (MGP_CAROLIEiJ_G0025604)	Prss12 (MGP_CAROLIEiJ_G0025603)	Mettl14 (MGP_CAROLIEiJ_G0025602)	Sec24d (MGP_CAROLIEiJ_G0025601)	Synpo2 (MGP_CAROLIEiJ_G0025600)	Myoz2 (MGP_CAROLIEiJ_G0025599)	Usp53 (MGP_CAROLIEiJ_G0025598)	Fabp2 (MGP_CAROLIEiJ_G0025597)	Pde5a (MGP_CAROLIEiJ_G0025596)	Fnbp1l (MGP_CAROLIEiJ_G0025595)	Bcar3 (MGP_CAROLIEiJ_G0025594)	Dnttip2 (MGP_CAROLIEiJ_G0025593)	Gclm (MGP_CAROLIEiJ_G0025592)	MGP_CAROLIEiJ_G0025591	Arhgap29 (MGP_CAROLIEiJ_G0025590)	Abcd3 (MGP_CAROLIEiJ_G0025589) ##22	F3 (MGP_CAROLIEiJ_G0025588)	MGP_CAROLIEiJ_G0025587	Slc44a3 (MGP_CAROLIEiJ_G0025586)	Cnn3 (MGP_CAROLIEiJ_G0025585)	Alg14 (MGP_CAROLIEiJ_G0025584)	Tlcd4 (MGP_CAROLIEiJ_G0025583)	MGP_CAROLIEiJ_G0025582	Ptbp2 (MGP_CAROLIEiJ_G0025581)	Dpyd (MGP_CAROLIEiJ_G0025580)	Snx7 (MGP_CAROLIEiJ_G0025579)	Plppr5 (MGP_CAROLIEiJ_G0025578)	Plppr4 (MGP_CAROLIEiJ_G0025577)	4930455H04Rik (MGP_CAROLIEiJ_G0025576)	Palmd (MGP_CAROLIEiJ_G0025575)	Frrs1 (MGP_CAROLIEiJ_G0025574)
Shrew mouse	MODERN SPECIES	17	Prss12 (MGP_PahariEiJ_G0027050)	Mettl14 (MGP_PahariEiJ_G0027049)	Sec24d (MGP_PahariEiJ_G0027048)	Synpo2 (MGP_PahariEiJ_G0027047)	Myoz2 (MGP_PahariEiJ_G0027046)	Usp53 (MGP_PahariEiJ_G0027045)	1810037I17Rik (MGP_PahariEiJ_G0027044)	Fabp2 (MGP_PahariEiJ_G0027043)	Pde5a (MGP_PahariEiJ_G0027042)	Fnbp1l (MGP_PahariEiJ_G0027041)	Bcar3 (MGP_PahariEiJ_G0027040)	Dnttip2 (MGP_PahariEiJ_G0027039)	Gclm (MGP_PahariEiJ_G0027038)	Abca4 (MGP_PahariEiJ_G0027037)	Arhgap29 (MGP_PahariEiJ_G0027036)	Abcd3 (MGP_PahariEiJ_G0027035) ##22	F3 (MGP_PahariEiJ_G0027034)	MGP_PahariEiJ_G0027033	Slc44a3 (MGP_PahariEiJ_G0027032)	Cnn3 (MGP_PahariEiJ_G0027031)	Alg14 (MGP_PahariEiJ_G0027030)	Tlcd4 (MGP_PahariEiJ_G0027029)	MGP_PahariEiJ_G0027028	Ptbp2 (MGP_PahariEiJ_G0027027)	Dpyd (MGP_PahariEiJ_G0027026)	Snx7 (MGP_PahariEiJ_G0027025)	Plppr5 (MGP_PahariEiJ_G0027024)	Plppr4 (MGP_PahariEiJ_G0027023)	MGP_PahariEiJ_G0027022	Palmd (MGP_PahariEiJ_G0027021)	MGP_PahariEiJ_G0027020
Rat	MODERN SPECIES	11	Prss12 (ENSRNOG00000015353)	Mettl14 (ENSRNOG00000015250)	ENSRNOG00000070921	Sec24d (ENSRNOG00000014872)	Synpo2 (ENSRNOG00000014867)	Myoz2 (ENSRNOG00000014815)	Usp53 (ENSRNOG00000014660)	C2h4orf3 (ENSRNOG00000014654)	Fabp2 (ENSRNOG00000024947)	Pde5a (ENSRNOG00000014443)	Fnbp1l (ENSRNOG00000013798)	Bcar3 (ENSRNOG00000013737)	Dnttip2 (ENSRNOG00000025025)	Gclm (ENSRNOG00000013409)	Arhgap29 (ENSRNOG00000012563)	Abcd3 (ENSRNOG00000011929) ##22	F3 (ENSRNOG00000011800)	ENSRNOG00000063273	Slc44a3 (ENSRNOG00000011723)	Cnn3 (ENSRNOG00000011559)	Alg14 (ENSRNOG00000011528)	Tlcd4 (ENSRNOG00000025160)	Rwdd3 (ENSRNOG00000029893)	Ptbp2 (ENSRNOG00000010827)	AABR07013086.1 (ENSRNOG00000023365)	Dpyd (ENSRNOG00000017105)	Snx7 (ENSRNOG00000017077)	Plppr5 (ENSRNOG00000016878)	Plppr4 (ENSRNOG00000016872)	AABR07013065.1 (ENSRNOG00000055846)	AABR07013057.1 (ENSRNOG00000060159)
Upper Galilee mountains blind mole rat	MODERN SPECIES	852															Arhgap29 (ENSNGAG00000010839)	Abcd3 (ENSNGAG00000008942) ##22	F3 (ENSNGAG00000020188)	Slc44a3 (ENSNGAG00000021143)	Cnn3 (ENSNGAG00000019987)	Alg14 (ENSNGAG00000012336)	Tlcd4 (ENSNGAG00000018399)	ENSNGAG00000014212	Ptbp2 (ENSNGAG00000016941)	Dpyd (ENSNGAG00000010583)	Snx7 (ENSNGAG00000001377)	Plppr5 (ENSNGAG00000014389)	Plppr4 (ENSNGAG00000017030)	ENSNGAG00000017397	ENSNGAG00000020637	4930455H04Rik (ENSNGAG00000008851)	Palmd (ENSNGAG00000007178)
Lesser Egyptian jerboa	MODERN SPECIES	108	Ift57 (ENSJJAG00000012277)	Myh15 (ENSJJAG00000011364)	Cip2a (ENSJJAG00000000422)	Dzip3 (ENSJJAG00000021427)	ENSJJAG00000019280	Trat1 (ENSJJAG00000009638)	Morc1 (ENSJJAG00000003792)	Gm5485 (ENSJJAG00000024232)	ENSJJAG00000024057	ENSJJAG00000023886	Nectin3 (ENSJJAG00000023655)	Dnttip2 (ENSJJAG00000023209)	Gclm (ENSJJAG00000022852)	Abca4 (ENSJJAG00000019664)	Arhgap29 (ENSJJAG00000016273)	Abcd3 (ENSJJAG00000012890) ##22	F3 (ENSJJAG00000011091)	Slc44a3 (ENSJJAG00000010238)	Cnn3 (ENSJJAG00000009894)	Alg14 (ENSJJAG00000006879)	Tlcd4 (ENSJJAG00000012418)	ENSJJAG00000011561	Ptbp2 (ENSJJAG00000023985)	Dpyd (ENSJJAG00000023195)	ENSJJAG00000021970	ENSJJAG00000021559	Snx7 (ENSJJAG00000020217)	Plppr5 (ENSJJAG00000019001)	Plppr4 (ENSJJAG00000018478)	ENSJJAG00000014146	Palmd (ENSJJAG00000014018)
Kangaroo rat	MODERN SPECIES	358	ENSDORG00000012030	ENSDORG00000023443	Evi5 (ENSDORG00000004209)	Rpl5 (ENSDORG00000005674)	Dipk1a (ENSDORG00000005676)	Mtf2 (ENSDORG00000028633)	Tmed5 (ENSDORG00000029519)	Ccdc18 (ENSDORG00000004844)	Dr1 (ENSDORG00000029179)	Fnbp1l (ENSDORG00000006623)	Bcar3 (ENSDORG00000006624)	ENSDORG00000023662	Gclm (ENSDORG00000006111)	Abca4 (ENSDORG00000000345)	Arhgap29 (ENSDORG00000005953)	Abcd3 (ENSDORG00000003729) ##22	F3 (ENSDORG00000023704)	Slc44a3 (ENSDORG00000009459)	Cnn3 (ENSDORG00000009463)	Alg14 (ENSDORG00000008564)	Tlcd4 (ENSDORG00000011742)	Rwdd3 (ENSDORG00000011164)	ENSDORG00000028292	Ptbp2 (ENSDORG00000011260)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468.l.b	ENSGT00940000155468.l.a	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.w.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468.l.b.a.a	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.w.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468.l.b.b	ENSGT00940000155468.l.b.a.a	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Guinea pig	MODERN SPECIES	2	RPAP2 (ENSCPOG00000007163)	GFI1 (ENSCPOG00000011727)	EVI5 (ENSCPOG00000006917)	ENSCPOG00000032453	DIPK1A (ENSCPOG00000000700)	MTF2 (ENSCPOG00000012184)	ENSCPOG00000032129	CCDC18 (ENSCPOG00000037069)	DR1 (ENSCPOG00000033199)	FNBP1L (ENSCPOG00000005155)	BCAR3 (ENSCPOG00000005604)	ENSCPOG00000031630	ENSCPOG00000037468	ABCA4 (ENSCPOG00000015461)	ARHGAP29 (ENSCPOG00000015466)	ABCD3 (ENSCPOG00000002087) ##22	F3 (ENSCPOG00000002092)	SLC44A3 (ENSCPOG00000006860)	CNN3 (ENSCPOG00000006865)	ALG14 (ENSCPOG00000025239)	TLCD4 (ENSCPOG00000001904)	RWDD3 (ENSCPOG00000037817)	PTBP2 (ENSCPOG00000003762)	DPYD (ENSCPOG00000003769)	SNX7 (ENSCPOG00000012454)	PLPPR5 (ENSCPOG00000002369)	PLPPR4 (ENSCPOG00000006308)	PALMD (ENSCPOG00000020596)	FRRS1 (ENSCPOG00000004910)	AGL (ENSCPOG00000011683)	SLC35A3 (ENSCPOG00000009156)
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b.w.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468.l.b.b	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Long-tailed chinchilla	MODERN SPECIES	130	EVI5 (ENSCLAG00000008558)	ENSCLAG00000008425	DIPK1A (ENSCLAG00000008376)	ENSCLAG00000017681	ENSCLAG00000008285	MTF2 (ENSCLAG00000007846)	TMED5 (ENSCLAG00000007030)	CCDC18 (ENSCLAG00000004649)	DR1 (ENSCLAG00000009918)	FNBP1L (ENSCLAG00000008001)	BCAR3 (ENSCLAG00000007644)	DNTTIP2 (ENSCLAG00000006829)	GCLM (ENSCLAG00000005983)	ABCA4 (ENSCLAG00000005461)	ARHGAP29 (ENSCLAG00000004627)	ABCD3 (ENSCLAG00000007070) ##22	F3 (ENSCLAG00000006707)
Degu	MODERN SPECIES	115	ENSODEG00000019300	DR1 (ENSODEG00000006106)	ENSODEG00000019219	ENSODEG00000019152	FNBP1L (ENSODEG00000006211)	ENSODEG00000006845	ENSODEG00000006568	ENSODEG00000004740	ENSODEG00000004546	ENSODEG00000005598	ENSODEG00000005234	GCLM (ENSODEG00000005056)	ABCA4 (ENSODEG00000005171)	ARHGAP29 (ENSODEG00000004849)	ENSODEG00000007973	ABCD3 (ENSODEG00000007534) ##22	F3 (ENSODEG00000004515)	SLC44A3 (ENSODEG00000004662)	ENSODEG00000006162	ALG14 (ENSODEG00000005834)	TLCD4 (ENSODEG00000005267)	ENSODEG00000005174	ENSODEG00000007142	ENSODEG00000007079	PTBP2 (ENSODEG00000005497)	ENSODEG00000004996	DPYD (ENSODEG00000006033)	SNX7 (ENSODEG00000005689)	PLPPR5 (ENSODEG00000005320)	PLPPR4 (ENSODEG00000004761)	ENSODEG00000004552
Naked mole-rat female	MODERN SPECIES	10	ENSHGLG00000045561	ENSHGLG00000049269	ENSHGLG00000007932	ENSHGLG00000006551	ENSHGLG00000032551	CCDC18 (ENSHGLG00000004402)	ENSHGLG00000004219	FNBP1L (ENSHGLG00000033036)	BCAR3 (ENSHGLG00000009405)	ENSHGLG00000016483	GCLM (ENSHGLG00000049623)	ABCA4 (ENSHGLG00000016293)	ENSHGLG00000037982	ARHGAP29 (ENSHGLG00000013186)	ENSHGLG00000012570	ABCD3 (ENSHGLG00000009521) ##22	ENSHGLG00000034361	F3 (ENSHGLG00000008407)	SLC44A3 (ENSHGLG00000010239)	CNN3 (ENSHGLG00000008972)	ALG14 (ENSHGLG00000008610)	ENSHGLG00000007651	RWDD3 (ENSHGLG00000041595)	ENSHGLG00000036777	ENSHGLG00000047422	ENSHGLG00000041535	ENSHGLG00000005205	ENSHGLG00000033443	ENSHGLG00000034783	ENSHGLG00000004138	ENSHGLG00000045438
Sciuridae	ANCESTRAL SPECIES		ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468.l.a	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Marmotini	ANCESTRAL SPECIES	77	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00390000016988.a.a.a.a.a.a.b	ENSGT00950000183180.b	ENSGT00940000155468.l.a	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b.h.a	ENSGT00950000183110.b.b.g	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Alpin marmot	MODERN SPECIES	70	ENSMMMG00000024011	TMED5 (ENSMMMG00000024010)	CCDC18 (ENSMMMG00000024006)	ENSMMMG00000024004	DR1 (ENSMMMG00000024003)	FNBP1L (ENSMMMG00000024001)	BCAR3 (ENSMMMG00000024000)	ENSMMMG00000023999	DNTTIP2 (ENSMMMG00000023998)	GCLM (ENSMMMG00000023997)	ENSMMMG00000023996	ENSMMMG00000023995	ENSMMMG00000023994	ENSMMMG00000023993	ENSMMMG00000023992	ABCD3 (ENSMMMG00000023991) ##22	F3 (ENSMMMG00000023990)	SLC44A3 (ENSMMMG00000023989)	CNN3 (ENSMMMG00000023988)	ALG14 (ENSMMMG00000023987)	TLCD4 (ENSMMMG00000023986)	RWDD3 (ENSMMMG00000023985)	PTBP2 (ENSMMMG00000023982)	DPYD (ENSMMMG00000023979)	SNX7 (ENSMMMG00000023975)	PLPPR5 (ENSMMMG00000023974)	PLPPR4 (ENSMMMG00000023973)	PALMD (ENSMMMG00000023972)	FRRS1 (ENSMMMG00000023971)	AGL (ENSMMMG00000023969)
Marmotini_b	ANCESTRAL SPECIES	116	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00390000016988.a.a.a.a.a.a.b	ENSGT00950000183180.b	ENSGT00940000155468.l.a	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b.h.a	ENSGT00950000183110.b.b.g	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00860000136099	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596
Squirrel	MODERN SPECIES	137	EVI5 (ENSSTOG00000015190)	ENSSTOG00000010256	DIPK1A (ENSSTOG00000023846)	MTF2 (ENSSTOG00000000231)	TMED5 (ENSSTOG00000028196)	CCDC18 (ENSSTOG00000000234)	DR1 (ENSSTOG00000014720)	FNBP1L (ENSSTOG00000014723)	ENSSTOG00000014735	DNTTIP2 (ENSSTOG00000027499)	ENSSTOG00000030847	ABCA4 (ENSSTOG00000000294)	ENSSTOG00000034098	ENSSTOG00000033918	ENSSTOG00000000308	ABCD3 (ENSSTOG00000004520) ##22	F3 (ENSSTOG00000004566)	SLC44A3 (ENSSTOG00000014051)	CNN3 (ENSSTOG00000014061)	ENSSTOG00000033568	ALG14 (ENSSTOG00000025476)	TLCD4 (ENSSTOG00000008558)	RWDD3 (ENSSTOG00000026046)	PTBP2 (ENSSTOG00000011727)	DPYD (ENSSTOG00000008412)	SNX7 (ENSSTOG00000028634)	PLPPR5 (ENSSTOG00000009269)	PLPPR4 (ENSSTOG00000000783)	ENSSTOG00000032342	PALMD (ENSSTOG00000021042)	FRRS1 (ENSSTOG00000008869)
Arctic ground squirrel	MODERN SPECIES	433															ENSUPAG00010023336	ABCD3 (ENSUPAG00010023334) ##22	F3 (ENSUPAG00010023332)	SLC44A3 (ENSUPAG00010023331)	CNN3 (ENSUPAG00010023329)	ALG14 (ENSUPAG00010023327)	TLCD4 (ENSUPAG00010023325)	RWDD3 (ENSUPAG00010023324)
Eurasian red squirrel	MODERN SPECIES		DIPK1A (ENSSVLG00005004374)	ENSSVLG00005000089	ENSSVLG00005000125	MTF2 (ENSSVLG00005000167)	ENSSVLG00005000190	TMED5 (ENSSVLG00005000211)	CCDC18 (ENSSVLG00005000256)	DR1 (ENSSVLG00005000282)	FNBP1L (ENSSVLG00005000352)	ENSSVLG00005000405	BCAR3 (ENSSVLG00005000445)	DNTTIP2 (ENSSVLG00005000490)	GCLM (ENSSVLG00005000523)	ABCA4 (ENSSVLG00005000757)	ARHGAP29 (ENSSVLG00005001033)	ABCD3 (ENSSVLG00005001081) ##22	F3 (ENSSVLG00005001139)	SLC44A3 (ENSSVLG00005001228)	CNN3 (ENSSVLG00005001336)	ENSSVLG00005001359	ENSSVLG00005001370	ALG14 (ENSSVLG00005001385)	TLCD4 (ENSSVLG00005001401)	RWDD3 (ENSSVLG00005001426)	ENSSVLG00005001437	PTBP2 (ENSSVLG00005001449)	DPYD (ENSSVLG00005001470)	SNX7 (ENSSVLG00005001512)	PLPPR5 (ENSSVLG00005001555)	PLPPR4 (ENSSVLG00005001606)	PALMD (ENSSVLG00005001662)
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00390000017965	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210.d.a.c.a.a.b	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.b	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00950000182827.C
Rabbit	MODERN SPECIES	4	ENSOCUG00000010089	DIPK1A (ENSOCUG00000027778)	MTF2 (ENSOCUG00000013736)	TMED5 (ENSOCUG00000012427)	CCDC18 (ENSOCUG00000012434)	DR1 (ENSOCUG00000007398)	ENSOCUG00000038039	ENSOCUG00000028085	FNBP1L (ENSOCUG00000008277)	BCAR3 (ENSOCUG00000015440)	DNTTIP2 (ENSOCUG00000008212)	GCLM (ENSOCUG00000013796)	ABCA4 (ENSOCUG00000009797)	ARHGAP29 (ENSOCUG00000009819)	ENSOCUG00000007917	ABCD3 (ENSOCUG00000004820) ##22	F3 (ENSOCUG00000004834)	ENSOCUG00000030435	SLC44A3 (ENSOCUG00000006304)	ENSOCUG00000006321	TLCD4 (ENSOCUG00000014239)	RWDD3 (ENSOCUG00000014241)	ENSOCUG00000026104	ENSOCUG00000001222	PTBP2 (ENSOCUG00000017608)	DPYD (ENSOCUG00000008610)	SNX7 (ENSOCUG00000007655)	PLPPR5 (ENSOCUG00000017499)	PLPPR4 (ENSOCUG00000008930)	ENSOCUG00000000143	ENSOCUG00000031866
Pika	MODERN SPECIES	2230																ENSOPRG00000004758 ##22	F3 (ENSOPRG00000004800)	SLC44A3 (ENSOPRG00000004819)	CNN3 (ENSOPRG00000004849)	ALG14 (ENSOPRG00000004866)
Tree shrew	MODERN SPECIES	731																ABCD3 (ENSTBEG00000013161) ##22
Platypus	MODERN SPECIES	15	ENSOANG00000038097	EVI5 (ENSOANG00000001021)	RPL5 (ENSOANG00000004669)	DIPK1A (ENSOANG00000037155)	MTF2 (ENSOANG00000008849)	TMED5 (ENSOANG00000039591)	CCDC18 (ENSOANG00000001148)	DR1 (ENSOANG00000043185)	FNBP1L (ENSOANG00000001948)	BCAR3 (ENSOANG00000032140)	ENSOANG00000036621	GCLM (ENSOANG00000005984)	ENSOANG00000008840	ABCA4 (ENSOANG00000046377)	ENSOANG00000003532	ABCD3 (ENSOANG00000011392) ##22	ENSOANG00000022074	SLC44A3 (ENSOANG00000011157)	CNN3 (ENSOANG00000043696)	ALG14 (ENSOANG00000012719)	TLCD4 (ENSOANG00000029750)	RWDD3 (ENSOANG00000014052)	PTBP2 (ENSOANG00000004656)	DPYD (ENSOANG00000003850)	SNX7 (ENSOANG00000010123)	PLPPR5 (ENSOANG00000046221)	ENSOANG00000046137	PALMD (ENSOANG00000003191)	FRRS1 (ENSOANG00000001534)	AGL (ENSOANG00000003192)	ENSOANG00000032265
Anura	ANCESTRAL SPECIES	6	ENSGT00940000156166.a	ENSGT00940000153846.a.a	ENSGT00950000183210	ENSGT00390000006452.b.b	ENSGT00950000183180.b	ENSGT00940000155468	ENSGT00940000153190.A	ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000047658	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000156181.B	ENSGT00940000158610	ENSGT00940000155315	ENSGT00500000044896	ENSGT01050000244924.a.b	ENSGT00390000000954	ENSGT00390000004175	ENSGT01010000222313.A.b.a.d	ENSGT00390000002579	ENSGT00940000154539.b	ENSGT00940000160336	ENSGT00940000157718	ENSGT00940000157704	ENSGT00950000183081.a.a.a
Frog	MODERN SPECIES	4	mtf2 (ENSXETG00000023001)	tmed5 (ENSXETG00000023000)	ccdc18 (ENSXETG00000022999)	XB1000829 [provisional] (ENSXETG00000022991)	dr1 (ENSXETG00000022989)	fnbp1l (ENSXETG00000008227)	bcar3 (ENSXETG00000008226)	ENSXETG00000044522	ENSXETG00000008225	gclm (ENSXETG00000008224)	mgc146850 (ENSXETG00000038549)	abca4 (ENSXETG00000008223)	arhgap29 (ENSXETG00000008222)	ENSXETG00000043067	ENSXETG00000046529	abcd3 (ENSXETG00000008218) ##22	f3 (ENSXETG00000030465)	ENSXETG00000047916	ENSXETG00000035021	plppr4 (ENSXETG00000008215)	plppr5 (ENSXETG00000008604)	snx7 (ENSXETG00000008602)	ENSXETG00000046838	dpyd (ENSXETG00000008600)	ptbp2 (ENSXETG00000018926)	ENSXETG00000042334	rwdd3 (ENSXETG00000025843)	hccs (ENSXETG00000018924)	alg14 (ENSXETG00000035574)	tlcd4 (ENSXETG00000038507)	cnn3 (ENSXETG00000018919)
Leishan spiny toad	MODERN SPECIES	11	RALGPS2 (ENSLLEG00000022984)	ENSLLEG00000023486	ANGPTL1 (ENSLLEG00000023557)	ENSLLEG00000023601	FAM20B (ENSLLEG00000023664)	TOR3A (ENSLLEG00000023717)	ABL2 (ENSLLEG00000023780)	ARPC5 (ENSLLEG00000023941)	NCF2 (ENSLLEG00000024043)	SMG7 (ENSLLEG00000024224)	NMNAT2 (ENSLLEG00000024830)	LAMC2 (ENSLLEG00000025049)	LAMC1 (ENSLLEG00000025217)	ENSLLEG00000025494	ENSLLEG00000025524	ABCD3 (ENSLLEG00000025613) ##22	ENSLLEG00000026082	PLPPR4 (ENSLLEG00000026166)	PLPPR5 (ENSLLEG00000026249)	ENSLLEG00000026518	SNX7 (ENSLLEG00000026541)	ENSLLEG00000026664	ENSLLEG00000026693 ##9	DPYD (ENSLLEG00000026742)	ENSLLEG00000026988	ENSLLEG00000027033	ENSLLEG00000027086	RWDD3 (ENSLLEG00000027117)	ENSLLEG00000027206	HCCS (ENSLLEG00000027349)	TLCD4 (ENSLLEG00000028699)
Coelacanth	MODERN SPECIES	1426											GCLM (ENSLACG00000010894)	ENSLACG00000010586	tecrl2b (ENSLACG00000010287)	ABCA4 (ENSLACG00000008782)	ARHGAP29 (ENSLACG00000006557)	ABCD3 (ENSLACG00000004708) ##22	F3 (ENSLACG00000003127)
Actinopterygii	ANCESTRAL SPECIES	8	ENSGT00940000156132	ENSGT00940000164927	ENSGT00400000023530	ENSGT00940000155252	ENSGT00940000153601.a.b	ENSGT00940000160961	ENSGT00940000163532	ENSGT00940000163518	ENSGT00940000154802	ENSGT00530000063786.a	ENSGT00940000154535.D	ENSGT00940000156998	ENSGT00950000182886.a.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000012668	ENSGT00940000160336	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00980000198918	ENSGT00940000157704
Neopterygii	ANCESTRAL SPECIES	8	ENSGT00940000164927	ENSGT00400000023530	ENSGT00940000155252	ENSGT00940000153601.a.b	ENSGT00940000160961	ENSGT00940000163532	ENSGT00940000163518	ENSGT00940000154802	ENSGT00530000063786.a	ENSGT00940000154535.D	ENSGT00940000156998	ENSGT00950000182886.a.a.a	ENSGT00940000155624.a.a	ENSGT00940000155624.b	ENSGT00950000183110.b.b	ENSGT00950000182955.a.a.a ##22	ENSGT00390000016735	ENSGT00390000012668	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00980000198918	ENSGT00940000157704
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	175				ENSGT01030000234629.D	ENSGT00940000155252.fb.a	ENSGT00940000153601.a.b.c	ENSGT00940000160961	ENSGT00940000163532	ENSGT00940000163518	ENSGT00530000063786.a	ENSGT00940000154535.D.vb.a	ENSGT00940000156998	ENSGT00950000182886.a.a.a.c	ENSGT00940000155624.a.a	ENSGT00950000183110.b.b.k.a	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00940000155624.b	ENSGT00950000183110.b.b.k.b	ENSGT00950000182955.a.a.a.h ##22	ENSGT00390000012668	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT01050000244924.a.b.g	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610.c	ENSGT00390000000954	ENSGT01050000244924.a.b.h
Clupeocephala	ANCESTRAL SPECIES	36	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00940000155667.b.a	ENSGT00400000023530.b	ENSGT00940000155252.fb.a	ENSGT00940000153601.a.b.c	ENSGT00940000160961	ENSGT00940000163532	ENSGT00940000163518	ENSGT00530000063786.a	ENSGT00940000154535.D.vb.a	ENSGT00940000156998.j.a	ENSGT00950000182886.a.a.a.c	ENSGT00940000155624.a.a	ENSGT00950000183110.b.b.k.a	ENSGT00950000182955.a.a.a.g ##22	ENSGT00940000159979.a.b	ENSGT01030000234559.a.a.b.a.a.a	ENSGT00940000154687.A	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d.h	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610.c	ENSGT00940000156181.A	ENSGT00940000157718.d
Otomorpha	ANCESTRAL SPECIES	74	ENSGT00390000005140.b.b	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00940000155667.b.a	ENSGT00400000023530.b	ENSGT00940000155252.fb.a	ENSGT00940000153601.a.b.c	ENSGT00940000160961	ENSGT00940000163518	ENSGT00530000063786.a	ENSGT00940000154535.D.vb.a	ENSGT00940000156998.j.a	ENSGT00950000182886.a.a.a.c	ENSGT00940000155624.a.a	ENSGT00950000183110.b.b.k.a	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00390000002579	ENSGT00940000154539.a.a.f	ENSGT01010000222313.A.b.a.d.h	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610.c	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00980000198918	ENSGT00940000157704.a.b	ENSGT00390000012596.f
Otophysi	ANCESTRAL SPECIES	191	ENSGT00940000156146.`b.a	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00940000157532.a	ENSGT00390000001688	ENSGT00940000154824.e.b	ENSGT00940000154824.e.a	ENSGT00940000154968	ENSGT00940000156952.a.a	ENSGT00390000005140.b.b	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00390000002579	ENSGT00940000154539.a.a.f	ENSGT01010000222313.A.b.a.d.h	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610.c	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00980000198918.a	ENSGT00940000157704.a.b	ENSGT00390000012596.f
Characiphysae	ANCESTRAL SPECIES		ENSGT00940000156146.`b.a	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00940000157532.a	ENSGT00390000001688	ENSGT00940000154824.e.b	ENSGT00940000154824.e.a	ENSGT00940000154968	ENSGT00940000156952.a.a	ENSGT00390000005140.b.b	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00390000002579	ENSGT00940000154539.a.a.f	ENSGT01010000222313.A.b.a.d.h	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610.c	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00980000198918.a	ENSGT00940000157704.a.b	ENSGT01100000263542.A
Channel catfish	MODERN SPECIES		vim (ENSIPUG00000012238)	TRDMT1 (ENSIPUG00000012194)	CUBN (ENSIPUG00000012044)	rsu1 (ENSIPUG00000011971)	c1ql3 (ENSIPUG00000011952)	dtx3la (ENSIPUG00000011939)	ENSIPUG00000011911	STEAP1 (ENSIPUG00000011896)	STEAP2 (ENSIPUG00000011885)	mmp16 (ENSIPUG00000011816)	ENSIPUG00000011759	cpne3 (ENSIPUG00000011642)	ENSIPUG00000011612	ENSIPUG00000011558	fam168b (ENSIPUG00000011522)	abcd3 (ENSIPUG00000011349) ##22	ACP5 (ENSIPUG00000011313)	F3 (ENSIPUG00000011290)	alg14 (ENSIPUG00000011276)	cnn3a (ENSIPUG00000011264)	TLCD4 (ENSIPUG00000011253)	grhl2a (ENSIPUG00000011243)	Ncald (ENSIPUG00000011202)	id4 (ENSIPUG00000011179)	cep76 (ENSIPUG00000011126)	ptpn2a (ENSIPUG00000011092)	ENSIPUG00000011077	ENSIPUG00000010980	ENSIPUG00000010956	ENSIPUG00000010895	MRS2 (ENSIPUG00000010863)
Characiphysae_b	ANCESTRAL SPECIES	2	ENSGT00940000156146.`b.a	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00940000157532.a	ENSGT00390000001688	ENSGT00940000154824.e.b	ENSGT00940000154824.e.a	ENSGT00940000154968	ENSGT00940000156952.a.a	ENSGT00390000005140.b.b	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00390000002579	ENSGT00940000154539.a.a.f	ENSGT01010000222313.A.b.a.d.h	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610.c	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00980000198918.a	ENSGT00940000157704.a.b	ENSGT01100000263542.A
Electric eel	MODERN SPECIES	11	ppp1r17 (ENSEEEG00000009880)	PDE1C (ENSEEEG00000009882)	ENSEEEG00000009884	vim (ENSEEEG00000009887)	trdmt1 (ENSEEEG00000009889)	CUBN (ENSEEEG00000009911)	RSU1 (ENSEEEG00000010004)	C1QL3 (ENSEEEG00000010005)	STEAP1 (ENSEEEG00000010008)	STEAP2 (ENSEEEG00000010013)	MMP16 (ENSEEEG00000010014)	ENSEEEG00000010019	cpne3 (ENSEEEG00000010027)	CREM (ENSEEEG00000010200)	fam168b (ENSEEEG00000010202)	abcd3a (ENSEEEG00000010235) ##22	acp5b (ENSEEEG00000011305)	f3a (ENSEEEG00000011306)	alg14 (ENSEEEG00000011310)	cnn3a (ENSEEEG00000011312)	ENSEEEG00000011316	TLCD4 (ENSEEEG00000011318)	hccsb (ENSEEEG00000011321)	ptbp2a (ENSEEEG00000011324)	DPYD (ENSEEEG00000011391)	snx7 (ENSEEEG00000011700)	plppr5b (ENSEEEG00000011701)	ENSEEEG00000011702	PALMD (ENSEEEG00000011703)	ENSEEEG00000011705	FRRS1 (ENSEEEG00000011711)
Characoidei	ANCESTRAL SPECIES	7	ENSGT00940000156146.`b.a	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00940000157532.a	ENSGT00390000001688	ENSGT00940000154824.e.b	ENSGT00940000154824.e.a	ENSGT00940000154968	ENSGT00940000156952.a.a	ENSGT00390000005140.b.b	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00390000002579	ENSGT00940000154539.a.a.f	ENSGT01010000222313.A.b.a.d.h	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610.c	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00940000157704.a.b	ENSGT01100000263542.A	ENSGT00420000029769.a
Red-bellied piranha	MODERN SPECIES	67	trdmt1 (ENSPNAG00000023720)	CUBN (ENSPNAG00000023645)	RSU1 (ENSPNAG00000003735)	C1QL3 (ENSPNAG00000022757)	dtx3la (ENSPNAG00000022740)	ENSPNAG00000022731	STEAP1 (ENSPNAG00000022718)	STEAP2 (ENSPNAG00000022702)	MMP16 (ENSPNAG00000003731)	ENSPNAG00000022624	ENSPNAG00000022607	ENSPNAG00000022559	cpne3 (ENSPNAG00000022532)	CREM (ENSPNAG00000022390)	fam168b (ENSPNAG00000022373)	abcd3a (ENSPNAG00000022338) ##22	acp5b (ENSPNAG00000022218)	f3a (ENSPNAG00000022203)	alg14 (ENSPNAG00000022197)	cnn3a (ENSPNAG00000022171)	TLCD4 (ENSPNAG00000022114)	hccsb (ENSPNAG00000022087)	ptbp2a (ENSPNAG00000022060)	DPYD (ENSPNAG00000021996)	snx7 (ENSPNAG00000021914)	plppr5b (ENSPNAG00000021850)	ENSPNAG00000021789	ENSPNAG00000021710	FRRS1 (ENSPNAG00000021614)	entpd3 (ENSPNAG00000021595)	GASK1A (ENSPNAG00000021580)
Mexicana tetra	MODERN SPECIES	1	vim (ENSAMXG00000000055)	trdmt1 (ENSAMXG00000000066)	CUBN (ENSAMXG00000000074)	RSU1 (ENSAMXG00000000077)	C1QL3 (ENSAMXG00000006424)	dtx3la (ENSAMXG00000034286)	ENSAMXG00000037506	STEAP1 (ENSAMXG00000000081)	STEAP2 (ENSAMXG00000000086)	MMP16 (ENSAMXG00000036283)	ENSAMXG00000040150	ENSAMXG00000000107	cpne3 (ENSAMXG00000036125)	CREM (ENSAMXG00000042232)	fam168b (ENSAMXG00000030805)	abcd3a (ENSAMXG00000038385) ##22	acp5b (ENSAMXG00000043227)	f3a (ENSAMXG00000000120)	alg14 (ENSAMXG00000042228)	cnn3a (ENSAMXG00000035803)	TLCD4 (ENSAMXG00000038172)	hccsb (ENSAMXG00000000130)	ptbp2a (ENSAMXG00000035476)	DPYD (ENSAMXG00000000135)	snx7 (ENSAMXG00000000139)	plppr5b (ENSAMXG00000030824)	ENSAMXG00000044063	PALMD (ENSAMXG00000000146)	ENSAMXG00000031356	FRRS1 (ENSAMXG00000000149)	entpd3 (ENSAMXG00000000152)
Cyprinoidei	ANCESTRAL SPECIES	52	ENSGT00940000155331.A.e	ENSGT00940000156146.`b.a	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00390000008042.A.a.a	ENSGT00940000157532.a	ENSGT00390000001688	ENSGT00940000154824.e.b	ENSGT00940000154824.e.a	ENSGT00940000154968	ENSGT00940000156952.a.a	ENSGT00390000005140.b.b	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00390000002579	ENSGT00940000154539.a.a.f	ENSGT01010000222313.A.b.a.d.h	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g	ENSGT00390000000954	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610.c	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00980000198918.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	32	ENSGT00940000159827.f.c	ENSGT00940000161762.a.a	ENSGT00940000155331.A.e.b	ENSGT00940000156146.`b.a.b	ENSGT00390000016416.g	ENSGT00940000155299.A.s.b	ENSGT00940000158676.e	ENSGT00940000161639.e.a	ENSGT00940000170561.b.a	ENSGT00390000008042.A.a.a.a	ENSGT00940000157532.a.b	ENSGT00940000154824.e.b.d	ENSGT00940000154968.i.b	ENSGT00940000156952.a.a	ENSGT00390000005140.b.b.u	ENSGT00950000182955.a.a.a.g.a ##22	ENSGT00390000016735.kb.a	ENSGT00390000012668.g.a.a	ENSGT00390000002579.a.b	ENSGT00940000154539.a.a.f.b	ENSGT01010000222313.A.b.a.d.h.f	ENSGT01010000222313.A.b.a.d.h.e.b.a	ENSGT00390000004175.a.b	ENSGT01050000244924.a.b.g.b	ENSGT00500000044896.fb.b	ENSGT00940000155315.s	ENSGT00940000158610.c.a	ENSGT00940000156181.A.b	ENSGT00940000157718.d.c	ENSGT00940000157704.a.b.b	ENSGT00390000012596.f.a
Goldfish	MODERN SPECIES	6															fam168b (ENSCARG00000015096)	abcd3a (ENSCARG00000013217) ##22	acp5b (ENSCARG00000013121)	f3a (ENSCARG00000013116)	alg14 (ENSCARG00000013112)	cnn3a (ENSCARG00000013096)	ENSCARG00000013087	ift80 (ENSCARG00000012145)	smc4 (ENSCARG00000010356)	MFRP (ENSCARG00000010244)	ENSCARG00000010234	ENSCARG00000010231	ENSCARG00000010223	med17 (ENSCARG00000010204)	ENSCARG00000009210	ENSCARG00000009169	ENSCARG00000009167
Cyprininae_a	ANCESTRAL SPECIES	87	ENSGT00940000159827.f.c	ENSGT00940000161762.a.a	ENSGT00940000155331.A.e.b	ENSGT00940000156146.`b.a.b	ENSGT00390000016416.g	ENSGT00940000155299.A.s.b	ENSGT00940000158676.e	ENSGT00940000161639.e.a	ENSGT00940000170561.b.a	ENSGT00390000008042.A.a.a.a	ENSGT00940000157532.a.b	ENSGT00940000154824.e.b.d	ENSGT00940000154968.i.b	ENSGT00940000156952.a.a	ENSGT00390000005140.b.b.u	ENSGT00950000182955.a.a.a.g.a ##22	ENSGT00390000016735.kb.a	ENSGT00390000012668.g.a.a	ENSGT00390000002579.a.b	ENSGT00940000154539.a.a.f.b	ENSGT01010000222313.A.b.a.d.h.f	ENSGT01050000244924.a.b.g.a.b	ENSGT01010000222313.A.b.a.d.h.e.b.a	ENSGT00390000004175.a.b	ENSGT01050000244924.a.b.g.b	ENSGT00500000044896.fb.b	ENSGT00940000155315.s	ENSGT00940000158610.c.a	ENSGT00940000156181.A.b	ENSGT00940000157718.d.c	ENSGT00940000157704.a.b.b
Common carp reference	MODERN SPECIES	14	NEUROD6 (ENSCCRG00000070659)	ENSCCRG00000065267	PDE1C (ENSCCRG00000004647)	vim (ENSCCRG00000032394)	trdmt1 (ENSCCRG00000064441)	CUBN (ENSCCRG00000040085)	RSU1 (ENSCCRG00000009994)	C1QL3 (ENSCCRG00000070043)	ENSCCRG00000061487	ENSCCRG00000009999	ENSCCRG00000028842	ENSCCRG00000021185	cpne3 (ENSCCRG00000036213)	cremb (ENSCCRG00000056180)	fam168b (ENSCCRG00000061556)	abcd3a (ENSCCRG00000033958) ##22	acp5b (ENSCCRG00000072150)	f3a (ENSCCRG00000033912)	ENSCCRG00000036116	alg14 (ENSCCRG00000080741)	cnn3a (ENSCCRG00000036113)	TLCD4 (ENSCCRG00000066401)	hccsb (ENSCCRG00000054835)	ptbp2a (ENSCCRG00000019880)	DPYD (ENSCCRG00000066451)	snx7 (ENSCCRG00000066515)	plppr5b (ENSCCRG00000073271)	ENSCCRG00000017748	FRRS1 (ENSCCRG00000030263)	PALMD (ENSCCRG00000019363)	ENSCCRG00000017506
Golden-line barbel	MODERN SPECIES	125									ENSSGRG00000050209	STEAP2 (ENSSGRG00000050208)	MMP16 (ENSSGRG00000050206)	ENSSGRG00000050203	cpne3 (ENSSGRG00000049962)	CREM (ENSSGRG00000049961)	fam168b (ENSSGRG00000049960)	abcd3a (ENSSGRG00000049949) ##22	acp5b (ENSSGRG00000049945)	f3a (ENSSGRG00000049944)	cnn3a (ENSSGRG00000049943)	TLCD4 (ENSSGRG00000049941)	ENSSGRG00000049940	ptbp2a (ENSSGRG00000049939)	DPYD (ENSSGRG00000049922)	snx7 (ENSSGRG00000049920)	plppr5b (ENSSGRG00000049919)	ENSSGRG00000049916	ENSSGRG00000049914	FRRS1 (ENSSGRG00000049906)	AGL (ENSSGRG00000049850)	ENSSGRG00000049843	ENSSGRG00000049842
Cyprininae	ANCESTRAL SPECIES	452	ENSGT00940000156146.`b.a.a	ENSGT00390000016416.h	ENSGT00940000155299.A.s.a	ENSGT00940000158676.f	ENSGT00940000161639.e.b	ENSGT00940000170561.b.b	ENSGT00390000008042.A.a.a.b	ENSGT00940000157532.a.a	ENSGT00390000001688	ENSGT00940000154824.e.b.c	ENSGT00940000154824.e.a	ENSGT00940000154968.j.b	ENSGT00940000154968.j.a	ENSGT00940000167264.h.b.a	ENSGT00390000005140.b.b.v	ENSGT00950000182955.a.a.a.g.b ##22	ENSGT00390000016735.kb.b	ENSGT00390000012668.g.a.b	ENSGT00390000002579.a.a	ENSGT00940000154539.a.a.f.a	ENSGT01010000222313.A.b.a.d.h.e.a	ENSGT00390000004175.a.a	ENSGT01050000244924.a.b.g.a.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	16	ENSCARG00000019522	PDE1C (ENSCARG00000019617)	vim (ENSCARG00000022156)	trdmt1 (ENSCARG00000022297)	CUBN (ENSCARG00000022470)	RSU1 (ENSCARG00000024890)	C1QL3 (ENSCARG00000024916)	ENSCARG00000024922	STEAP2 (ENSCARG00000024928)	MMP16 (ENSCARG00000024943)	ENSCARG00000024972	ENSCARG00000024987	ENSCARG00000025441	cpne3 (ENSCARG00000025674)	cremb (ENSCARG00000029291)	abcd3a (ENSCARG00000029311) ##22	acp5b (ENSCARG00000029474)	f3a (ENSCARG00000029487)	alg14 (ENSCARG00000029498)	cnn3a (ENSCARG00000029510)	TLCD4 (ENSCARG00000029538)	hccsb (ENSCARG00000029544)	vim (ENSCARG00000029570)	trdmt1 (ENSCARG00000029700)	CUBN (ENSCARG00000029752)	RSU1 (ENSCARG00000030235)	C1QL3 (ENSCARG00000030261)	RB1CC1 (ENSCARG00000030277)	ENSCARG00000030337	pcmtd1 (ENSCARG00000030928)	SNTG1 (ENSCARG00000030942)
Goldfish	MODERN SPECIES	453														ENSCARG00000051219	fam168b (ENSCARG00000051192)	abcd3a (ENSCARG00000050722) ##22	acp5b (ENSCARG00000050673)	f3a (ENSCARG00000050661)	alg14 (ENSCARG00000050637)	cnn3a (ENSCARG00000050590)	TLCD4 (ENSCARG00000050568)
Cyprininae_a	ANCESTRAL SPECIES	628															ENSGT00390000005140.b.b.v	ENSGT00950000182955.a.a.a.g.b ##22	ENSGT00390000016735.kb.b	ENSGT00390000012668.g.a.b	ENSGT00390000002579.a.a	ENSGT00940000154539.a.a.f.a	ENSGT01010000222313.A.b.a.d.h.e.a	ENSGT00390000004175.a.a	ENSGT01050000244924.a.b.g.a.a
Common carp reference	MODERN SPECIES	40	PDE1C (ENSCCRG00000013259)	vim (ENSCCRG00000039995)	trdmt1 (ENSCCRG00000040034)	CUBN (ENSCCRG00000009884)	RSU1 (ENSCCRG00000074227)	C1QL3 (ENSCCRG00000077073)	ENSCCRG00000050412	ENSCCRG00000021195	MMP16 (ENSCCRG00000067800)	ENSCCRG00000064593	ENSCCRG00000058568	ENSCCRG00000021179	cpne3 (ENSCCRG00000021137)	cremb (ENSCCRG00000077862)	fam168b (ENSCCRG00000037683)	abcd3a (ENSCCRG00000049705) ##22	acp5b (ENSCCRG00000049674)	f3a (ENSCCRG00000050185)	alg14 (ENSCCRG00000010288)	cnn3a (ENSCCRG00000010293)	TLCD4 (ENSCCRG00000053696)	hccsb (ENSCCRG00000072255)	ptbp2a (ENSCCRG00000019615)	ENSCCRG00000063014	ENSCCRG00000079487	snx7 (ENSCCRG00000045013)	plppr5b (ENSCCRG00000004511)	ENSCCRG00000072308	PALMD (ENSCCRG00000028145)	FRRS1 (ENSCCRG00000017586)	ENSCCRG00000082881
Golden-line barbel	MODERN SPECIES	735													ENSSGRG00000035909	ENSSGRG00000035910	fam168b (ENSSGRG00000035911)	abcd3a (ENSSGRG00000035916) ##22	acp5b (ENSSGRG00000035970)	f3a (ENSSGRG00000035971)	alg14 (ENSSGRG00000035972)	cnn3a (ENSSGRG00000035975)	TLCD4 (ENSSGRG00000035985)	hccsb (ENSSGRG00000036021)	ENSSGRG00000036038	ptbp2a (ENSSGRG00000036039)	ENSSGRG00000036042	dpyda.1 (ENSSGRG00000036044)	ENSSGRG00000036046
Zebrafish	MODERN SPECIES	16	ppp1r17 (ENSDARG00000093677)	vim (ENSDARG00000010008)	trdmt1 (ENSDARG00000034518)	CUBN (ENSDARG00000087013)	RSU1 (ENSDARG00000102885)	C1QL3 (ENSDARG00000010350)	dtx3la (ENSDARG00000089511)	STEAP2 (ENSDARG00000062887)	ENSDARG00000116438	ENSDARG00000091489	ENSDARG00000101368	ENSDARG00000101225	cpne3 (ENSDARG00000104177)	cremb (ENSDARG00000102899)	fam168b (ENSDARG00000101733)	abcd3a (ENSDARG00000104085) ##22	acp5b (ENSDARG00000101456)	f3a (ENSDARG00000099124)	alg14 (ENSDARG00000103093)	cnn3a (ENSDARG00000099510)	TLCD4 (ENSDARG00000098451)	hccsb (ENSDARG00000099358)	ptbp2a (ENSDARG00000101947)	ENSDARG00000109869	DPYD (ENSDARG00000086853)	dpyda.1 (ENSDARG00000102671)	snx7 (ENSDARG00000105185)	ENSDARG00000101934	plppr5b (ENSDARG00000101348)	ENSDARG00000078755	ENSDARG00000034321
Clupeiformes	ANCESTRAL SPECIES	51	ENSGT00390000005140.b.b	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00940000155667.b.a	ENSGT00400000023530.b	ENSGT00940000155252.fb.a	ENSGT00940000153601.a.b.c	ENSGT00940000160961	ENSGT00940000163518	ENSGT00530000063786.a	ENSGT00940000154535.D.vb.a	ENSGT00940000156998.j.a	ENSGT00950000182886.a.a.a.c	ENSGT00940000155624.a.a	ENSGT00950000183110.b.b.k.a	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00390000002579	ENSGT00940000154539.a.a.f	ENSGT01010000222313.A.b.a.d.h	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610.c	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00980000198918	ENSGT00940000157704.a.b	ENSGT01030000234531.B
Denticle herring	MODERN SPECIES	11	nrros (ENSDCDG00000014566)	ENSDCDG00000014564	sh3glb1a (ENSDCDG00000014340)	ENSDCDG00000014289	VAV3 (ENSDCDG00000013988)	NTNG1 (ENSDCDG00000013847)	prmt6 (ENSDCDG00000025898)	ENSDCDG00000025189	rnpc3 (ENSDCDG00000025176)	ENSDCDG00000025173	col11a1a (ENSDCDG00000025131)	olfm3a (ENSDCDG00000025113)	ENSDCDG00000025109	abca4a (ENSDCDG00000023293)	ARHGAP29 (ENSDCDG00000023181)	abcd3a (ENSDCDG00000020755) ##22	acp5b (ENSDCDG00000020736)	f3a (ENSDCDG00000020734)	alg14 (ENSDCDG00000020733)	cnn3a (ENSDCDG00000020723)	TLCD4 (ENSDCDG00000020722)	hccsb (ENSDCDG00000020720)	ENSDCDG00000020718	ptbp2a (ENSDCDG00000020309)	DPYD (ENSDCDG00000018309)	ENSDCDG00000018241	snx7 (ENSDCDG00000018235)	plppr5b (ENSDCDG00000018232)	ENSDCDG00000018229	PALMD (ENSDCDG00000018228)	ENSDCDG00000018227
Atlantic herring	MODERN SPECIES	8	fam168b (ENSCHAG00000025555)	fbxo45 (ENSCHAG00000025550)	nrros (ENSCHAG00000025548)	sh3glb1a (ENSCHAG00000025487)	ENSCHAG00000025480	VAV3 (ENSCHAG00000025339)	NTNG1 (ENSCHAG00000025304)	prmt6 (ENSCHAG00000025300)	ENSCHAG00000025015	rnpc3 (ENSCHAG00000024961)	col11a1a (ENSCHAG00000024891)	olfm3a (ENSCHAG00000024885)	ENSCHAG00000024679	abca4a (ENSCHAG00000014943)	ARHGAP29 (ENSCHAG00000014473)	abcd3a (ENSCHAG00000011959) ##22	acp5b (ENSCHAG00000011891)	f3a (ENSCHAG00000011884)	alg14 (ENSCHAG00000011881)	cnn3a (ENSCHAG00000011819)	TLCD4 (ENSCHAG00000011814)	hccsb (ENSCHAG00000011788)	ptbp2a (ENSCHAG00000010672)	DPYD (ENSCHAG00000010019)	snx7 (ENSCHAG00000009950)	plppr5b (ENSCHAG00000009914)	ENSCHAG00000009873	PALMD (ENSCHAG00000009863)	ENSCHAG00000009834	FRRS1 (ENSCHAG00000009719)	ENSCHAG00000009677
Euteleosteomorpha	ANCESTRAL SPECIES	36	ENSGT00940000160622.ab	ENSGT00390000005140.b.b	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00940000155667.b.a	ENSGT00400000023530.b	ENSGT00940000155252.fb.a	ENSGT00940000153601.a.b.c	ENSGT00940000160961	ENSGT00530000063786.a	ENSGT00940000154535.D.vb.a	ENSGT00940000156998.j.a	ENSGT00950000182886.a.a.a.c	ENSGT00940000155624.a.a	ENSGT00950000183110.b.b.k.a	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d.h	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610.c	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00980000198918	ENSGT00940000157704.a.b	ENSGT00390000012596.f	ENSGT00940000164178
Acanthomorphata	ANCESTRAL SPECIES	240		ENSGT00390000005140.b.b	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00940000155667.b.a	ENSGT00400000023530.b	ENSGT00940000155252.fb.a	ENSGT00940000153601.a.b.c	ENSGT00940000160961	ENSGT00530000063786.a	ENSGT00940000154535.D.vb.a	ENSGT00940000156998.j.a	ENSGT00950000182886.a.a.a.c	ENSGT00940000155624.a.a	ENSGT00950000183110.b.b.k.a	ENSGT00950000182955.a.a.a.g ##22
Euacanthomorphacea	ANCESTRAL SPECIES	62											ENSGT00940000155331.A.e	ENSGT00940000161762	ENSGT00940000159827.f	ENSGT00940000164178	ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000172372	ENSGT00390000007109	ENSGT00940000161278	ENSGT00520000055637.B	ENSGT00940000153769.B	ENSGT01090000260052.b.b.b	ENSGT00940000160556	ENSGT00940000158294.g.a	ENSGT00940000154014.a	ENSGT00390000015821	ENSGT00530000063186.b.a
Percomorphaceae	ANCESTRAL SPECIES	130											ENSGT00940000155331.A.e	ENSGT00940000161762	ENSGT00940000159827.f	ENSGT00940000164178	ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a
Tiger tail seahorse	MODERN SPECIES	195														ENSHCOG00000006091	ENSHCOG00000006084	abcd3a (ENSHCOG00000006057) ##22	f3a (ENSHCOG00000006002)	alg14 (ENSHCOG00000005968)	vipr1b (ENSHCOG00000005962)	ENSHCOG00000000189	ENSHCOG00000005906	ENSHCOG00000005856	ENSHCOG00000005226	KPNA1 (ENSHCOG00000005212)	fam162a (ENSHCOG00000005186)	mix23 (ENSHCOG00000005179)	ENSHCOG00000005168	ENSHCOG00000005163	ENSHCOG00000005150	ENSHCOG00000005146	ENSHCOG00000005142
Percomorphaceae_B	ANCESTRAL SPECIES	20						ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00940000155331.A.e	ENSGT00940000161762	ENSGT00940000159827.f	ENSGT00940000164178	ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00940000175356	ENSGT00980000198918	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c
Ovalentaria	ANCESTRAL SPECIES	21	ENSGT01050000244924.a.b.g	ENSGT00940000155315.v	ENSGT00940000158610.c	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00940000157704.a.b	ENSGT00390000010285.d	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00940000155331.A.e	ENSGT00940000161762	ENSGT00940000159827.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab
Atherinomorphae	ANCESTRAL SPECIES	19											ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v	ENSGT01050000244924.a.b.g
Oryzias	ANCESTRAL SPECIES	18	ENSGT00940000157116.f	ENSGT00940000157866	ENSGT00940000164060.n.l	ENSGT00940000155105	ENSGT00940000165403.a	ENSGT00940000159301.c.a	ENSGT00390000010557	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00940000155281.cb	ENSGT00390000020445	ENSGT00940000158304	ENSGT00950000183019.f.a.c.a	ENSGT00980000198678.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.b.a.b.e	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00950000183207.a	ENSGT00440000038972	ENSGT00940000155829	ENSGT00940000159846.a.b	ENSGT01030000235637	ENSGT00940000159742.sb	ENSGT00390000007109	ENSGT00940000172372	ENSGT00520000055637.B	ENSGT00940000153769.B	ENSGT01090000260052.b.b.b.j	ENSGT00940000160556
Oryzias_b	ANCESTRAL SPECIES	16	ENSGT00940000157866	ENSGT00950000182923.B.a	ENSGT00940000164060.n.l	ENSGT00940000155105	ENSGT00940000165403.a	ENSGT00940000159301.c.a	ENSGT00390000010557	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00940000155281.cb	ENSGT00390000020445	ENSGT00940000158304	ENSGT00950000183019.f.a.c.a	ENSGT00980000198678.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.b.a.b.e	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00950000183207.a	ENSGT00440000038972	ENSGT00940000155829	ENSGT00940000179315	ENSGT00940000159846.a.b	ENSGT00940000159742.sb	ENSGT00390000007109	ENSGT00520000055637.B	ENSGT00940000153769.B	ENSGT01090000260052.b.b.b.j	ENSGT00940000160556	ENSGT00940000158294.g.a
Javanese ricefish	MODERN SPECIES	12	ENSOJAG00000023549	xylb (ENSOJAG00000023527)	acvr2ba (ENSOJAG00000023521)	ENSOJAG00000023518	ENSOJAG00000023516	actr3b (ENSOJAG00000023504)	ENSOJAG00000023489	ENSOJAG00000023486	ENSOJAG00000023484	ENSOJAG00000023479	ENSOJAG00000023476	ENSOJAG00000023472	ENSOJAG00000023470	ENSOJAG00000023423	ENSOJAG00000023402	abcd3a (ENSOJAG00000022905) ##22	f3a (ENSOJAG00000022811)	cnn3b (ENSOJAG00000022796)	alg14 (ENSOJAG00000022791)	aoc1 (ENSOJAG00000022784)	ENSOJAG00000022597	KCNH2 (ENSOJAG00000022129)	ENSOJAG00000022070	ENSOJAG00000022028	ENSOJAG00000022007	ENSOJAG00000021998	ift74 (ENSOJAG00000021964)	ENSOJAG00000021944	ENSOJAG00000021931	ENSOJAG00000021928	vstm2a (ENSOJAG00000021918)
Indian medaka	MODERN SPECIES	14	ENSOMEG00000001266	nlk2 (ENSOMEG00000001262)	SMCO4 (ENSOMEG00000001257)	ENSOMEG00000001254	OMG (ENSOMEG00000001250)	ENSOMEG00000001247	slc2a15a (ENSOMEG00000001244)	fgf8a (ENSOMEG00000001237)	ENSOMEG00000001235	fbxw4 (ENSOMEG00000001232)	ENSOMEG00000001228	ENSOMEG00000001219	ENSOMEG00000001212	ENSOMEG00000001209	ENSOMEG00000001205	abcd3a (ENSOMEG00000001199) ##22	F3 (ENSOMEG00000001193)	cnn3b (ENSOMEG00000001191)	alg14 (ENSOMEG00000001187)	aoc1 (ENSOMEG00000001182)	ENSOMEG00000001179	ENSOMEG00000001177	ENSOMEG00000001175	ENSOMEG00000001172	KCNH2 (ENSOMEG00000001168)	ENSOMEG00000001155	ift74 (ENSOMEG00000001150)	ENSOMEG00000001146	ENSOMEG00000001142	ENSOMEG00000001138	ENSOMEG00000022495
Oryzias_a	ANCESTRAL SPECIES	55	ENSGT00940000155450.d	ENSGT00940000157116.f	ENSGT00940000157866	ENSGT00940000164060.n.l	ENSGT00940000155105	ENSGT00940000165403.a	ENSGT00940000159301.c.a	ENSGT00390000010557	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00940000155281.cb	ENSGT00390000020445	ENSGT00940000158304	ENSGT00950000183019.f.a.c.a	ENSGT00980000198678.a	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00950000183207.a	ENSGT00940000155829	ENSGT00940000159846.a.b	ENSGT01030000235637	ENSGT00940000159742.sb	ENSGT00390000007109	ENSGT00940000172372	ENSGT00520000055637.B	ENSGT00940000153769.B	ENSGT00940000158294.g.a	ENSGT00940000154653	ENSGT00390000014526
Japanese Medaka HdrR	MODERN SPECIES	12	ENSORLG00000023496	ENSORLG00000003639	ENSORLG00000022135	ENSORLG00000003644	eci2 (ENSORLG00000003659)	ENSORLG00000025819	crygn2 (ENSORLG00000003704)	ENSORLG00000003729	xylb (ENSORLG00000003755)	acvr2ba (ENSORLG00000003784)	ENSORLG00000027146	ENSORLG00000025423	actr3b (ENSORLG00000003906)	ENSORLG00000003934	ENSORLG00000022401	abcd3a (ENSORLG00000003998) ##22	ENSORLG00000004009	aoc1 (ENSORLG00000004048)	cnn3b (ENSORLG00000021940)	alg14 (ENSORLG00000004026)	ENSORLG00000004121	ENSORLG00000022532	ENSORLG00000004137	ENSORLG00000004140	ENSORLG00000023733	ift74 (ENSORLG00000004150)	ENSORLG00000004152	vstm2a (ENSORLG00000019963)	ENSORLG00000029686	ENSORLG00000028777	HECW1 (ENSORLG00000004224)
Chinese medaka	MODERN SPECIES	2306																abcd3a (ENSOSIG00000001370) ##22
Cyprinodontiformes	ANCESTRAL SPECIES	63											ENSGT00390000016416	ENSGT00940000155299.A.l	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v	ENSGT01050000244924.a.b.g
Aplocheiloidei	DUPLICATION
Aplocheiloidei	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.a.g.c ##22
Turquoise killifish	MODERN SPECIES	1031																abcd3a (ENSNFUG00015014406) ##22	F3A (ENSNFUG00015014342)
Aplocheiloidei	ANCESTRAL SPECIES	155															ENSGT01030000236784	ENSGT00950000182955.a.a.a.g.d ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v	ENSGT01050000244924.a.b.g
Mangrove rivulus	MODERN SPECIES	27	nceh1b.1 (ENSKMAG00000021898)	tnfsf10 (ENSKMAG00000021902)	msl2b (ENSKMAG00000021909)	ENSKMAG00000021913	ENSKMAG00000021915	ENSKMAG00000021917	ENSKMAG00000021921	ENSKMAG00000021937	HECW1 (ENSKMAG00000021975)	ENSKMAG00000022008	ENSKMAG00000022013	C1QL3 (ENSKMAG00000022017)	RSU1 (ENSKMAG00000022022)	trdmt1 (ENSKMAG00000022026)	CUBN (ENSKMAG00000022034)	abcd3a (ENSKMAG00000022059) ##22	f3a (ENSKMAG00000022065)	cnn3b (ENSKMAG00000022071)	alg14 (ENSKMAG00000000170)	STEAP2 (ENSKMAG00000000191)	mos (ENSKMAG00000000250)	plag1 (ENSKMAG00000000294)	chchd7 (ENSKMAG00000000308)	ENSKMAG00000000322	ENSKMAG00000000364	FRRS1 (ENSKMAG00000000510)	ENSKMAG00000000602	ENSKMAG00000000640	plppr5b (ENSKMAG00000000656)	snx7 (ENSKMAG00000000695)	ENSKMAG00000000701
Turquoise killifish	MODERN SPECIES	271														ENSNFUG00015018241	ENSNFUG00015018244	ENSNFUG00015018246 ##22
Cyprinodontoidei	ANCESTRAL SPECIES	107												ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579
Poeciliinae	ANCESTRAL SPECIES	53	ENSGT00390000015821	ENSGT00530000063186.b.a	ENSGT00940000156394	ENSGT00390000018540	ENSGT00980000198918	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v	ENSGT00390000004175.a	ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000155299.A.l	ENSGT00940000170561.b	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00940000160233	ENSGT00390000008042.A.a.a	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab
Poecilia	ANCESTRAL SPECIES	104										ENSGT00390000004175.a	ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000155299.A.l	ENSGT00940000170561.b	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00940000160233	ENSGT00390000008042.A.a.a	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab
NAME_6	ANCESTRAL SPECIES	370														ENSGT00940000155299.A.l	ENSGT00940000170561.b	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00940000160233	ENSGT00390000008042.A.a.a	ENSGT00940000159246	ENSGT00390000001029
Sailfin molly	MODERN SPECIES	1606														ENSPLAG00000017484	ENSPLAG00000017467	abcd3a (ENSPLAG00000017442) ##22
Amazon molly	MODERN SPECIES	660															ENSPFOG00000024093	abcd3a (ENSPFOG00000008917) ##22	F3 (ENSPFOG00000009184)	cnn3b (ENSPFOG00000009256)	alg14 (ENSPFOG00000009335)	mos (ENSPFOG00000009336)	mos (ENSPFOG00000009339)	STEAP2 (ENSPFOG00000009356)	plag1 (ENSPFOG00000009456)	chchd7 (ENSPFOG00000009470)	ENSPFOG00000009473	ENSPFOG00000023593	ENSPFOG00000024273	ENSPFOG00000009483	ENSPFOG00000009491	ENSPFOG00000023439	ENSPFOG00000022304
Guppy	MODERN SPECIES	451								ENSPREG00000004941	hccsb (ENSPREG00000004956)	trdmt1 (ENSPREG00000004979)	RSU1 (ENSPREG00000005059)	C1QL3 (ENSPREG00000005107)	ENSPREG00000005117	CUBN (ENSPREG00000005166)	ENSPREG00000005432	abcd3a (ENSPREG00000005454) ##22	f3a (ENSPREG00000005553)	cnn3b (ENSPREG00000005572)	alg14 (ENSPREG00000005599)	mos (ENSPREG00000005615)	STEAP2 (ENSPREG00000005630)	plag1 (ENSPREG00000005658)	chchd7 (ENSPREG00000005670)	ENSPREG00000005687	mkxa (ENSPREG00000005739)	ODAD2 (ENSPREG00000005875)	rab18a (ENSPREG00000005923)	itgb1a (ENSPREG00000005964)	nrp1a (ENSPREG00000006008)	ENSPREG00000006083	CUL2 (ENSPREG00000006125)
Platyfish	MODERN SPECIES	13	ENSXMAG00000026909	ENSXMAG00000022195	plppr5b (ENSXMAG00000025534)	ENSXMAG00000029050	ENSXMAG00000029379	ENSXMAG00000021792	snx7 (ENSXMAG00000011241)	ENSXMAG00000024515	hccsb (ENSXMAG00000000067)	trdmt1 (ENSXMAG00000002807)	RSU1 (ENSXMAG00000002794)	C1QL3 (ENSXMAG00000002792)	SLC15A1 (ENSXMAG00000010624)	CUBN (ENSXMAG00000002734)	ENSXMAG00000024925	abcd3a (ENSXMAG00000015201) ##22	f3a (ENSXMAG00000002497)	cnn3b (ENSXMAG00000017081)	alg14 (ENSXMAG00000003478)	mos (ENSXMAG00000000985)	STEAP2 (ENSXMAG00000000978)	plag1 (ENSXMAG00000017832)	chchd7 (ENSXMAG00000004420)	ENSXMAG00000029442	ENSXMAG00000023758	ENSXMAG00000013619
NAME_4	ANCESTRAL SPECIES	377													ENSGT00940000175356	ENSGT00390000010285.d	ENSGT00940000160622.ab	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579
Mummichog	MODERN SPECIES	520												ENSFHEG00000019789	ENSFHEG00000019863	ENSFHEG00000019901	ENSFHEG00000019908	abcd3a (ENSFHEG00000020063) ##22	f3a (ENSFHEG00000020096)	ENSFHEG00000020113	ENSFHEG00000020140
Sheepshead minnow	MODERN SPECIES	2210																abcd3a (ENSCVAG00000012663) ##22
Ovalentaria_B	ANCESTRAL SPECIES	39							ENSGT00940000164178	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00940000155331.A.e	ENSGT00940000161762	ENSGT00940000159827.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00940000175356	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v
Cichlidae	ANCESTRAL SPECIES	59	ENSGT00390000015821	ENSGT00530000063186.b.a	ENSGT00940000158929	ENSGT00940000158264.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000157047.m.a.a	ENSGT00940000157124	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00940000155331.A.e	ENSGT00940000161762	ENSGT00940000159827.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00940000156394	ENSGT00390000018540	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g	ENSGT00940000155315.v	ENSGT00940000158610.c	ENSGT00940000156181.A
Pseudocrenilabrinae	ANCESTRAL SPECIES	40														ENSGT00940000161762	ENSGT00940000159827.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246.e	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00940000175356	ENSGT00940000157718.d	ENSGT00940000156394	ENSGT00390000018540	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g
Nile tilapia	MODERN SPECIES	21				ENSONIG00000020591	ENSONIG00000035282	ENSONIG00000029092	ENSONIG00000034214	ENSONIG00000038478	ENSONIG00000038070	ENSONIG00000039289	ENSONIG00000028792	ENSONIG00000039725	ENSONIG00000041716	ENSONIG00000035066	neurod6a (ENSONIG00000021273)	abcd3a (ENSONIG00000009673) ##22	acp5b (ENSONIG00000009671)	f3a (ENSONIG00000009666)	cnn3b (ENSONIG00000009662)	STEAP2 (ENSONIG00000009658)	mos (ENSONIG00000021272)	plag1 (ENSONIG00000009655)	chchd7 (ENSONIG00000032065)	ENSONIG00000036019	ENSONIG00000009654	ENSONIG00000041051	ENSONIG00000041793	ENSONIG00000036804	tgfbr1b (ENSONIG00000009648)	RECK (ENSONIG00000009646)	hccsb (ENSONIG00000009644)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	52															ENSGT01030000236784	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246.e	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00940000175356	ENSGT00940000157718.d	ENSGT00940000156394	ENSGT00390000018540	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g
Haplochromini	ANCESTRAL SPECIES	83															ENSGT01030000236784	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246.e	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00940000175356	ENSGT00940000157718.d	ENSGT00940000156394	ENSGT00390000018540	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g
Burton s mouthbrooder	MODERN SPECIES	534																abcd3a (ENSHBUG00000008185) ##22	acp5b (ENSHBUG00000000206)	f3a (ENSHBUG00000008230)	cnn3b (ENSHBUG00000008300)	STEAP2 (ENSHBUG00000008320)	mos (ENSHBUG00000008342)	plag1 (ENSHBUG00000008348)	chchd7 (ENSHBUG00000008357)	ENSHBUG00000008379	ENSHBUG00000008428	ENSHBUG00000000833	ENSHBUG00000008482	tgfbr1a (ENSHBUG00000008493)	RECK (ENSHBUG00000008585)	hccsb (ENSHBUG00000008601)	ptbp2a (ENSHBUG00000008662)
Haplochromini_A	ANCESTRAL SPECIES	88															ENSGT01030000236784	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246.e	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00940000175356	ENSGT00940000177593	ENSGT00940000156394	ENSGT00390000018540	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g
P. nyererei	MODERN SPECIES	667															neurod6a (ENSPNYG00000008982)	abcd3a (ENSPNYG00000009031) ##22	acp5b (ENSPNYG00000009159)	f3a (ENSPNYG00000009174)	cnn3b (ENSPNYG00000009207)	alg14 (ENSPNYG00000009229)	STEAP2 (ENSPNYG00000009242)	mos (ENSPNYG00000009255)	plag1 (ENSPNYG00000009268)	chchd7 (ENSPNYG00000009282)	ENSPNYG00000009292
Haplochromini_B	ANCESTRAL SPECIES	94															ENSGT01030000236784	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246.e	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00940000175356	ENSGT00940000177593	ENSGT00940000156394	ENSGT00390000018540	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g
Zebra mbuna	MODERN SPECIES	246														neurod6a (ENSMZEG00005014628)	ENSMZEG00005014632	abcd3a (ENSMZEG00005014643) ##22	acp5b (ENSMZEG00005014700)	f3a (ENSMZEG00005014708)	ENSMZEG00005014717	cnn3b (ENSMZEG00005014726)	alg14 (ENSMZEG00005014746)	STEAP2 (ENSMZEG00005014758)	mos (ENSMZEG00005014765)	plag1 (ENSMZEG00005014774)	chchd7 (ENSMZEG00005014780)
Eastern happy	MODERN SPECIES	21	ENSACLG00000006558	ENSACLG00000006548	ENSACLG00000006543	ENSACLG00000006538	ENSACLG00000006293	ENSACLG00000006285	ENSACLG00000006278	ENSACLG00000006262	ENSACLG00000006257	ENSACLG00000006248	ENSACLG00000006242	ENSACLG00000006231	ENSACLG00000006213	ENSACLG00000006205	ENSACLG00000006201	abcd3a (ENSACLG00000006073) ##22	acp5b (ENSACLG00000006061)	f3a (ENSACLG00000006051)	cnn3b (ENSACLG00000005868)	alg14 (ENSACLG00000005862)	STEAP2 (ENSACLG00000005838)	mos (ENSACLG00000005834)	plag1 (ENSACLG00000005828)	CHCHD7 (ENSACLG00000005825)	ENSACLG00000005813	ENSACLG00000005777	ENSACLG00000005769	tgfbr1b (ENSACLG00000005755)	ENSACLG00000005746	RECK (ENSACLG00000005658)	hccsb (ENSACLG00000005545)
Lyretail cichlid	MODERN SPECIES	425														ENSNBRG00000015280	ENSNBRG00000015287	abcd3a (ENSNBRG00000015297) ##22	acp5b (ENSNBRG00000015340)	f3a (ENSNBRG00000015346)	cnn3b (ENSNBRG00000015363)	alg14 (ENSNBRG00000015379)	STEAP2 (ENSNBRG00000015383)	mos (ENSNBRG00000015404)	plag1 (ENSNBRG00000015413)	CHCHD7 (ENSNBRG00000015422)	ENSNBRG00000015429	ENSNBRG00000015451	ENSNBRG00000015463	tgfbr1b (ENSNBRG00000015485)	RECK (ENSNBRG00000015519)	hccsb (ENSNBRG00000015558)	ptbp2a (ENSNBRG00000015650)
Midas cichlid	MODERN SPECIES	746	EPB41L3 (ENSACIG00000022917)	ENSACIG00000022897	lama1 (ENSACIG00000022855)	CUBN (ENSACIG00000022789)	trdmt1 (ENSACIG00000022773)	RSU1 (ENSACIG00000022767)	ENSACIG00000022757	C1QL3 (ENSACIG00000022751)	ENSACIG00000022746	ENSACIG00000022736	ENSACIG00000022726	ENSACIG00000022719	ENSACIG00000022708	neurod6a (ENSACIG00000022701)	ENSACIG00000022695	abcd3a (ENSACIG00000022677) ##22	ENSACIG00000022660	f3a (ENSACIG00000022649)	cnn3b (ENSACIG00000022581)	alg14 (ENSACIG00000022549)	STEAP2 (ENSACIG00000022540)	mos (ENSACIG00000022533)	plag1 (ENSACIG00000022515)	CHCHD7 (ENSACIG00000022473)	ENSACIG00000022453	ENSACIG00000022384
Pomacentridae	ANCESTRAL SPECIES	112	ENSGT00940000158294.g.a.d	ENSGT00940000160556	ENSGT01090000260052.b.b.b.i.d	ENSGT01090000260052.b.b.b.i.c	ENSGT01010000223449	ENSGT00940000153769.B	ENSGT00520000055637.B	ENSGT00390000007109	ENSGT00940000164178	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00940000155331.A.e	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00940000175356	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v
Pomacentridae_A	ANCESTRAL SPECIES	137		ENSGT00940000158294.g.a.d	ENSGT00940000160556	ENSGT01090000260052.b.b.b.i.d	ENSGT01090000260052.b.b.b.i.c	ENSGT01010000223449	ENSGT00940000153769.B	ENSGT00520000055637.B	ENSGT00390000007109	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00940000155331.A.e	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000175356	ENSGT00940000157704.a.b	ENSGT00940000157718.d
Amphiprion	ANCESTRAL SPECIES	139		ENSGT00940000158294.g.a.d	ENSGT00940000160556	ENSGT01090000260052.b.b.b.i.d	ENSGT01090000260052.b.b.b.i.c	ENSGT01010000223449	ENSGT00940000153769.B	ENSGT00520000055637.B	ENSGT00390000007109	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00940000155331.A.e	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000166207.c	ENSGT00940000157704.a.b	ENSGT00940000175356	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c
Orange clownfish	MODERN SPECIES	14	vstm2a (ENSAPEG00000012338)	ENSAPEG00000012328	ENSAPEG00000012291	ENSAPEG00000012277	ENSAPEG00000012245	ENSAPEG00000012128	ENSAPEG00000012103	ift74 (ENSAPEG00000012086)	ENSAPEG00000012030	CUBN (ENSAPEG00000011265)	trdmt1 (ENSAPEG00000011173)	RSU1 (ENSAPEG00000011108)	C1QL3 (ENSAPEG00000011045)	ENSAPEG00000011017	ENSAPEG00000010947	abcd3a (ENSAPEG00000010846) ##22	f3a (ENSAPEG00000010834)	cnn3b (ENSAPEG00000010788)	alg14 (ENSAPEG00000010765)	STEAP2 (ENSAPEG00000010736)	mos (ENSAPEG00000010713)	plag1 (ENSAPEG00000010672)	chchd7 (ENSAPEG00000010668)	ENSAPEG00000010619	ENSAPEG00000010580	ENSAPEG00000010550	ENSAPEG00000010542	ENSAPEG00000010526	FRRS1 (ENSAPEG00000010488)	PALMD (ENSAPEG00000010437)	ENSAPEG00000010360
Clown anemonefish	MODERN SPECIES	3433									ENSAOCG00000014252	CUBN (ENSAOCG00000014816)	trdmt1 (ENSAOCG00000002410)	RSU1 (ENSAOCG00000014908)	C1QL3 (ENSAOCG00000014947)	ENSAOCG00000014961	ENSAOCG00000014996	abcd3a (ENSAOCG00000015106) ##22	f3a (ENSAOCG00000015124)	cnn3b (ENSAOCG00000015163)	alg14 (ENSAOCG00000015185)	STEAP2 (ENSAOCG00000015234)	mos (ENSAOCG00000015264)	plag1 (ENSAOCG00000015326)	chchd7 (ENSAOCG00000015342)	ENSAOCG00000015382	ENSAOCG00000015417	ENSAOCG00000015435
Spiny chromis	MODERN SPECIES	1287																abcd3a (ENSAPOG00000007972) ##22	f3a (ENSAPOG00000007914)	cnn3b (ENSAPOG00000007900)	alg14 (ENSAPOG00000007865)	STEAP2 (ENSAPOG00000007839)	mos (ENSAPOG00000007831)	plag1 (ENSAPOG00000007819)	chchd7 (ENSAPOG00000007780)
Bicolor damselfish	MODERN SPECIES	2462																abcd3a (ENSSPAG00000008839) ##22	f3a (ENSSPAG00000008822)
Percomorphaceae_C	ANCESTRAL SPECIES	21					ENSGT00910000145890	ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00940000155331.A.e	ENSGT00940000161762	ENSGT00940000159827.f	ENSGT00940000155299.A	ENSGT00940000164178	ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00980000198918	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v
Percomorphaceae_D	ANCESTRAL SPECIES	21						ENSGT00940000159827.f	ENSGT00940000161762	ENSGT00940000155331.A.e	ENSGT00940000170561.b	ENSGT00940000161639.e	ENSGT00940000158676	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000164178	ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v	ENSGT01050000244924.a.b.g
Anabantaria	ANCESTRAL SPECIES	22						ENSGT00940000159827.f	ENSGT00940000161762	ENSGT00970000197884	ENSGT00940000155331.A.e	ENSGT00940000170561.b	ENSGT00940000161639.e	ENSGT00940000158676	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000164178	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000155807.a	ENSGT00940000175338	ENSGT00940000158667	ENSGT00670000098076	ENSGT00550000075074	ENSGT00400000023815	ENSGT00390000011379	ENSGT00940000160982	ENSGT00940000165685	ENSGT00940000158768	ENSGT00940000156920	ENSGT00390000016974	ENSGT00390000003564	ENSGT00940000157040
Anabantoidei	ANCESTRAL SPECIES	20	ENSGT00390000018540	ENSGT00940000156394	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00940000154014.a	ENSGT00940000159827.f	ENSGT00940000161762	ENSGT00970000197884	ENSGT00940000155331.A.e	ENSGT00940000170561.b	ENSGT00940000161639.e	ENSGT00940000158676	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000164178	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000175338	ENSGT00940000155807.a	ENSGT00940000158667	ENSGT00670000098076	ENSGT00550000075074	ENSGT00400000023815	ENSGT00940000160982	ENSGT00940000165685	ENSGT00940000158768	ENSGT00940000156920	ENSGT00390000016974	ENSGT00390000003564	ENSGT00940000157040	ENSGT00940000163681
Climbing perch	MODERN SPECIES	11	ENSATEG00000017996	ENSATEG00000017976	NEUROD6 (ENSATEG00000026070)	ENSATEG00000025245	ENSATEG00000028058	PDE1C (ENSATEG00000017833)	ENSATEG00000017808	ENSATEG00000026178	ENSATEG00000017800	ENSATEG00000017773	ENSATEG00000017746	ENSATEG00000017527	ENSATEG00000017504	ENSATEG00000017451	ENSATEG00000017407	ENSATEG00000017325 ##22	ENSATEG00000017311	ENSATEG00000017287	ENSATEG00000017212	ENSATEG00000017189	nanog (ENSATEG00000017118)	ENSATEG00000017082	si:ch211-196f5.2 (ENSATEG00000017061)	ENSATEG00000017042	pdcd6 (ENSATEG00000017031)	zgc:101569 (ENSATEG00000017019)	bmp6 (ENSATEG00000016989)	txndc5 (ENSATEG00000016955)	bloc1s5 (ENSATEG00000026637)	EEF1E1 (ENSATEG00000016890)	slc35b3 (ENSATEG00000016859)
Siamese fighting fish	MODERN SPECIES	15	snx7 (ENSBSLG00000002133)	plppr5b (ENSBSLG00000002196)	ENSBSLG00000002217	ENSBSLG00000002268	ENSBSLG00000002319	CIBAR2 (ENSBSLG00000002419)	ENSBSLG00000002564	ENSBSLG00000002922	C1QL3 (ENSBSLG00000002927)	RSU1 (ENSBSLG00000002933)	trdmt1 (ENSBSLG00000002944)	ENSBSLG00000003594	ENSBSLG00000003650	ENSBSLG00000003703	ENSBSLG00000003721	abcd3a (ENSBSLG00000003929) ##22	f3a (ENSBSLG00000004226)	fen1 (ENSBSLG00000004233)	tm9sf1 (ENSBSLG00000004873)	ENSBSLG00000005386	IPO4 (ENSBSLG00000005509)	si:ch211-196f5.2 (ENSBSLG00000005977)	pdcd6 (ENSBSLG00000005980)	zgc:101569 (ENSBSLG00000006281)	bmp6 (ENSBSLG00000006349)	txndc5 (ENSBSLG00000006684)	bloc1s5 (ENSBSLG00000007164)	EEF1E1 (ENSBSLG00000007170)	slc35b3 (ENSBSLG00000007183)	ENSBSLG00000007300	tfap2a (ENSBSLG00000007333)
Zig-zag eel	MODERN SPECIES	12	tgfbr1b (ENSMAMG00000021763)	ENSMAMG00000021765	ENSMAMG00000021784	ENSMAMG00000021819	ENSMAMG00000021831	aoc1 (ENSMAMG00000021873)	ENSMAMG00000021874	ENSMAMG00000021882	ENSMAMG00000021894	ENSMAMG00000024328	ENSMAMG00000021904	ENSMAMG00000025326	ENSMAMG00000028512	ENSMAMG00000021931	ENSMAMG00000021951	ENSMAMG00000021956 ##22	ENSMAMG00000021961	ENSMAMG00000021966	ENSMAMG00000021968	TM9SF1 (ENSMAMG00000021972)	nanog (ENSMAMG00000021974)	IPO4 (ENSMAMG00000021976)	si:ch211-196f5.2 (ENSMAMG00000021980)	rec8b (ENSMAMG00000021983)	bmp6 (ENSMAMG00000021989)	txndc5 (ENSMAMG00000021997)	bloc1s5 (ENSMAMG00000022003)	EEF1E1 (ENSMAMG00000026341)	slc35b3 (ENSMAMG00000022008)	ENSMAMG00000022011	tfap2a (ENSMAMG00000022021)
Carangaria	ANCESTRAL SPECIES	21						ENSGT00940000159827.f	ENSGT00940000161762	ENSGT00940000155331.A.e	ENSGT00940000170561.b	ENSGT00940000161639.e	ENSGT00940000158676	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000164178	ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v	ENSGT01050000244924.a.b.g
Pleuronectoidei	ANCESTRAL SPECIES	75											ENSGT00940000158676	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000164178	ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000171175.c	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v
Tongue sole	MODERN SPECIES	13										ENSCSEG00000009044	CUBN (ENSCSEG00000009071)	ENSCSEG00000009169	ENSCSEG00000009183	ENSCSEG00000009215	ENSCSEG00000009221	abcd3a (ENSCSEG00000009258) ##22	acp5b (ENSCSEG00000009359)	f3a (ENSCSEG00000009377)	ENSCSEG00000009403	trdmt1 (ENSCSEG00000009418)	RSU1 (ENSCSEG00000009452)	ENSCSEG00000009467	ENSCSEG00000009478	ENSCSEG00000009493	ENSCSEG00000009517	chchd7 (ENSCSEG00000009525)	plag1 (ENSCSEG00000009528)	STEAP2 (ENSCSEG00000009540)	alg14 (ENSCSEG00000009546)	cnn3b (ENSCSEG00000009562)	ENSCSEG00000006913
Turbot	MODERN SPECIES	13	ENSSMAG00000005730	ENSSMAG00000005717	rdh12l (ENSSMAG00000005643)	ca2 (ENSSMAG00000005625)	ENSSMAG00000005622	ENSSMAG00000028004	ENSSMAG00000029018	ENSSMAG00000029983	ENSSMAG00000005549	ENSSMAG00000005539	ENSSMAG00000005529	ENSSMAG00000005495	ENSSMAG00000005423	ENSSMAG00000005180	ENSSMAG00000005142	ABCD3 (ENSSMAG00000005053) ##22	f3b (ENSSMAG00000005030)	CNN3 (ENSSMAG00000005011)	ALG14 (ENSSMAG00000036549)	ENSSMAG00000004973	MOS (ENSSMAG00000004968)	ENSSMAG00000004948	CHCHD7 (ENSSMAG00000004872)	ENSSMAG00000004782	ENSSMAG00000004770	FRRS1 (ENSSMAG00000004720)	ENSSMAG00000023344	ENSSMAG00000031014	plppr5b (ENSSMAG00000004656)	snx7 (ENSSMAG00000004631)	ptbp2a (ENSSMAG00000004576)
Carangaria_A	ANCESTRAL SPECIES	15						ENSGT00940000159827.f	ENSGT00940000161762	ENSGT00940000155331.A.e	ENSGT00940000170561.b	ENSGT00940000161639.e	ENSGT00940000158676	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000164178	ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.u.a
Seriola	ANCESTRAL SPECIES	151															ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c
Yellowtail amberjack	MODERN SPECIES	3017															AGL (ENSSLDG00000013135)	abcd3a (ENSSLDG00000012984) ##22	acp5b (ENSSLDG00000012955)	f3a (ENSSLDG00000012908)	cnn3b (ENSSLDG00000012843)	alg14 (ENSSLDG00000012816)	STEAP2 (ENSSLDG00000012785)	plag1 (ENSSLDG00000012765)	chchd7 (ENSSLDG00000012751)	ENSSLDG00000012359	CIBAR2 (ENSSLDG00000012104)	ENSSLDG00000012039
Greater amberjack	MODERN SPECIES	211															AGL (ENSSDUG00000022757)	abcd3a (ENSSDUG00000022733) ##22	acp5b (ENSSDUG00000022726)	f3a (ENSSDUG00000022723)	cnn3b (ENSSDUG00000022713)	alg14 (ENSSDUG00000022712)	STEAP2 (ENSSDUG00000022705)	ENSSDUG00000022703	mos (ENSSDUG00000022699)	plag1 (ENSSDUG00000022694)	chchd7 (ENSSDUG00000022676)	ENSSDUG00000022667	ENSSDUG00000022645	FRRS1 (ENSSDUG00000022638)	PALMD (ENSSDUG00000022631)	ENSSDUG00000022625	plppr5b (ENSSDUG00000022618)
Barramundi perch	MODERN SPECIES	380								ENSLCAG00010020692	ENSLCAG00010020651	C1QL3 (ENSLCAG00010020646)	RSU1 (ENSLCAG00010020642)	trdmt1 (ENSLCAG00010020627)	CUBN (ENSLCAG00010020610)	ENSLCAG00010020592	AGL (ENSLCAG00010020130)	abcd3a (ENSLCAG00010019319) ##22	acp5b (ENSLCAG00010019134)	f3a (ENSLCAG00010019124)	cnn3b (ENSLCAG00010019119)	alg14 (ENSLCAG00010019113)	STEAP2 (ENSLCAG00010019106)	mos (ENSLCAG00010019103)	plag1 (ENSLCAG00010019100)	CHCHD7 (ENSLCAG00010019095)	ENSLCAG00010019078	CIBAR2 (ENSLCAG00010019068)	ENSLCAG00010019059
Eupercaria	ANCESTRAL SPECIES	20						ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00940000155331.A.e	ENSGT00940000161762	ENSGT00940000159827.f	ENSGT00940000164178	ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00980000198918	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v
Tetraodontidae	ANCESTRAL SPECIES	219												ENSGT00390000002579	ENSGT00390000012668.g.a	ENSGT00390000016416	ENSGT00940000158676	ENSGT00950000182955.a.a.a.g ##22
Fugu	MODERN SPECIES	70	ENSTRUG00000026003	ENSTRUG00000022130	mos (ENSTRUG00000002896)	plag1 (ENSTRUG00000030383)	chchd7 (ENSTRUG00000024856)	alg14 (ENSTRUG00000028975)	f3a (ENSTRUG00000003042)	f3a (ENSTRUG00000030995)	ENSTRUG00000026582	ENSTRUG00000029749	ENSTRUG00000022818	trdmt1 (ENSTRUG00000030761)	RSU1 (ENSTRUG00000027692)	ENSTRUG00000026461	ENSTRUG00000029193	abcd3a (ENSTRUG00000027250) ##22	ENSTRUG00000028323	plppr5b (ENSTRUG00000000079)	ENSTRUG00000029373	ENSTRUG00000033015	snx7 (ENSTRUG00000001341)	ENSTRUG00000033189	ENSTRUG00000028086	ENSTRUG00000028199	ENSTRUG00000032092	ENSTRUG00000030539	ENSTRUG00000022404	ENSTRUG00000027462	trdmt1 (ENSTRUG00000026271)	ENSTRUG00000030592	vstm2a (ENSTRUG00000026258)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000018958	ENSTNIG00000018957	vstm2a (ENSTNIG00000018956)	ENSTNIG00000018955	stk17a (ENSTNIG00000018954)	ENSTNIG00000018953	lancl2 (ENSTNIG00000018952)	tgfbr1b (ENSTNIG00000018951)	ptbp2a (ENSTNIG00000018950)	ENSTNIG00000003861	ENSTNIG00000000730	trdmt1 (ENSTNIG00000003862)	RSU1 (ENSTNIG00000005279)	ENSTNIG00000005280	ENSTNIG00000005281	abcd3a (ENSTNIG00000005282) ##22	ENSTNIG00000005283	plppr5b (ENSTNIG00000005284)	ENSTNIG00000003812	ENSTNIG00000003811	ENSTNIG00000003810	atad1b (ENSTNIG00000003809)	PODN (ENSTNIG00000018674)	ryk (ENSTNIG00000018673)	SLCO2A1 (ENSTNIG00000018672)	zgc:109982 (ENSTNIG00000007155)	dr1 (ENSTNIG00000007154)	med8 (ENSTNIG00000007153)	tmco1 (ENSTNIG00000007152)	magoh (ENSTNIG00000007151)	cpt2 (ENSTNIG00000007150)
Eupecaria_A	ANCESTRAL SPECIES	19						ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00940000155331.A.e	ENSGT00940000161762	ENSGT00940000159827.f	ENSGT00940000164178	ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00980000198918	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v
Ballan wrasse	MODERN SPECIES	117				plppr5b (ENSLBEG00000025093)	ENSLBEG00000025136	ENSLBEG00000025170	CIBAR2 (ENSLBEG00000025268)	ENSLBEG00000025446	chchd7 (ENSLBEG00000025502)	plag1 (ENSLBEG00000025522)	mos (ENSLBEG00000025528)	STEAP2 (ENSLBEG00000025542)	alg14 (ENSLBEG00000025563)	cnn3b (ENSLBEG00000025584)	f3a (ENSLBEG00000025608)	abcd3a (ENSLBEG00000025647) ##22	ENSLBEG00000025736	SLC12A7 (ENSLBEG00000026022)	GFOD1 (ENSLBEG00000026689)	KIF5B (ENSLBEG00000026709)	ARHGAP12 (ENSLBEG00000026764)	zeb1b (ENSLBEG00000026840)	znf438 (ENSLBEG00000026853)	ENSLBEG00000026879	MAP3K8 (ENSLBEG00000026950)	MTPAP (ENSLBEG00000026965)	ENSLBEG00000026988	ENSLBEG00000027009	ENSLBEG00000027025	ENSLBEG00000027042	trdmt1 (ENSLBEG00000027059)
Eupecaria_B	ANCESTRAL SPECIES	19						ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00940000155331.A.e	ENSGT00940000161762	ENSGT00940000159827.f	ENSGT00940000164178	ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00980000198918	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v
Perciformes	ANCESTRAL SPECIES	41	ENSGT00390000018540	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g	ENSGT00940000155315.v	ENSGT00940000158610.c	ENSGT00940000156181.A	ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00940000155331.A.e	ENSGT00940000161762	ENSGT00940000159827.f	ENSGT00940000164178	ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00940000157718.d	ENSGT00940000155299.A
Cottioidei	ANCESTRAL SPECIES	82							ENSGT00940000155466.f	ENSGT00940000160556	ENSGT01090000260052.b.b.b.i	ENSGT00940000153769.B	ENSGT00520000055637.B	ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157718.d	ENSGT00940000155299.A
Lumpfish	MODERN SPECIES	12	snx7 (ENSCLMG00005019304)	plppr5b (ENSCLMG00005019307)	ENSCLMG00005019308	ENSCLMG00005019309	stk17a (ENSCLMG00005019313)	ENSCLMG00005019439	vstm2a (ENSCLMG00005019588)	ENSCLMG00005019589	ENSCLMG00005019590	ENSCLMG00005019591	trdmt1 (ENSCLMG00005019592)	RSU1 (ENSCLMG00005019597)	C1QL3 (ENSCLMG00005019598)	ENSCLMG00005019599	ENSCLMG00005019600	abcd3a (ENSCLMG00005019602) ##22	f3a (ENSCLMG00005019988)	cnn3b (ENSCLMG00005019990)	alg14 (ENSCLMG00005019991)	STEAP2 (ENSCLMG00005019999)	mos (ENSCLMG00005020108)	plag1 (ENSCLMG00005020109)	chchd7 (ENSCLMG00005020118)	ENSCLMG00005020122	CIBAR2 (ENSCLMG00005020124)	ENSCLMG00005020125	CUBN (ENSCLMG00005020132)	ENSCLMG00005020136	ENSCLMG00005020137	ENSCLMG00005020138 ##9
Stickleback	MODERN SPECIES	606														ENSGACG00000000076	ENSGACG00000000077	abcd3a (ENSGACG00000000078) ##22	f3a (ENSGACG00000000087)	cnn3b (ENSGACG00000000098)	STEAP2 (ENSGACG00000000100)	mos (ENSGACG00000000102)	chchd7 (ENSGACG00000000104)	ENSGACG00000000105	ENSGACG00000000108	CUBN (ENSGACG00000000111)	ENSGACG00000000120
Perciformes_a	ANCESTRAL SPECIES	60														ENSGT00940000164178	ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00940000157718.d	ENSGT00940000155299.A	ENSGT00940000159827.f	ENSGT00940000161762	ENSGT00940000155331.A.e
Channel bull blenny	MODERN SPECIES	12	kbtbd2 (ENSCGOG00000021865)	avl9 (ENSCGOG00000021874)	lsm5 (ENSCGOG00000021972)	psme2 (ENSCGOG00000021977)	ENSCGOG00000021978	irf9 (ENSCGOG00000021985)	emc9 (ENSCGOG00000021987)	nceh1b.1 (ENSCGOG00000021998)	tnfsf10 (ENSCGOG00000022000)	msl2b (ENSCGOG00000022004)	ENSCGOG00000022009	ENSCGOG00000022057	ENSCGOG00000023228	GABRR3 (ENSCGOG00000023233)	ENSCGOG00000023234	abcd3a (ENSCGOG00000023286) ##22	acp5b (ENSCGOG00000023698)	f3a (ENSCGOG00000023699)	cnn3b (ENSCGOG00000023700)	alg14 (ENSCGOG00000023707)	STEAP2 (ENSCGOG00000023709)	mos (ENSCGOG00000023710)	plag1 (ENSCGOG00000023711)	chchd7 (ENSCGOG00000023712)	ENSCGOG00000023713	CIBAR2 (ENSCGOG00000023715)	ENSCGOG00000023717	ENSCGOG00000023718	ENSCGOG00000023721	CUBN (ENSCGOG00000023724)	neurod6a (ENSCGOG00000023733)
Pike perch	MODERN SPECIES	217													ENSSLUG00000024455	ENSSLUG00000024454	AGL (ENSSLUG00000024425)	abcd3a (ENSSLUG00000023588) ##22	f3a (ENSSLUG00000023409)	cnn3b (ENSSLUG00000023405)	alg14 (ENSSLUG00000023396)	ENSSLUG00000023392	STEAP2 (ENSSLUG00000023285)	mos (ENSSLUG00000023262)	plag1 (ENSSLUG00000023254)	chchd7 (ENSSLUG00000023247)	ENSSLUG00000023084	ENSSLUG00000023058
Eupecaria_C	ANCESTRAL SPECIES	19									ENSGT00940000161762	ENSGT00940000155331.A.e	ENSGT00940000170561.b	ENSGT00940000161639.e	ENSGT00940000158676	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00980000198918	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v
Gilthead seabream	MODERN SPECIES	10	ENSSAUG00010019067	chchd7 (ENSSAUG00010019697)	plag1 (ENSSAUG00010019702)	mos (ENSSAUG00010019704)	ENSSAUG00010019705	STEAP2 (ENSSAUG00010019706)	alg14 (ENSSAUG00010019707)	cnn3b (ENSSAUG00010019709)	f3a (ENSSAUG00010019712)	CUBN (ENSSAUG00010019746)	trdmt1 (ENSSAUG00010019788)	RSU1 (ENSSAUG00010019791)	C1QL3 (ENSSAUG00010019793)	ENSSAUG00010019795	ENSSAUG00010019809	abcd3a (ENSSAUG00010019841) ##22	ENSSAUG00010022686	znf438 (ENSSAUG00010024910)	zeb1b (ENSSAUG00010024914)	ARHGAP12 (ENSSAUG00010024927)	KIF5B (ENSSAUG00010025131)	GFOD1 (ENSSAUG00010025198)	SLC12A7 (ENSSAUG00010025206)	aoc1 (ENSSAUG00010025246)	ENSSAUG00010025249	KCNH2 (ENSSAUG00010025264)	ENSSAUG00010025472	ENSSAUG00010025473	ENSSAUG00010025474	ift74 (ENSSAUG00010025475)	ENSSAUG00010025476
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	17							ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000158676	ENSGT00940000161639.e	ENSGT00940000170561.b	ENSGT00940000155331.A.e	ENSGT00940000159827.f	ENSGT00940000164178	ENSGT00390000012596.f	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a	ENSGT00390000008042.A.a.a	ENSGT00940000160233	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000160622.ab	ENSGT00390000010285.d	ENSGT00940000157704.a.b	ENSGT00980000198918	ENSGT00940000157718.d	ENSGT00940000156181.A	ENSGT00940000158610.c	ENSGT00940000155315.v	ENSGT01050000244924.a.b.g
European seabass	MODERN SPECIES	8					ENSDLAG00005030205	ENSDLAG00005002432	ENSDLAG00005000448	ENSDLAG00005031322	ENSDLAG00005000410	ENSDLAG00005000578	ENSDLAG00005017795	ENSDLAG00005017755	ENSDLAG00005033922	ENSDLAG00005008103	ENSDLAG00005019673	abcd3a (ENSDLAG00005016714) ##22	ENSDLAG00005030640	f3a (ENSDLAG00005016611)	CNN3 (ENSDLAG00005016500)	ENSDLAG00005016456	MOS (ENSDLAG00005016447)	ENSDLAG00005016440	CHCHD7 (ENSDLAG00005033450)	ENSDLAG00005016344	ENSDLAG00005034281	FRRS1 (ENSDLAG00005016276)	ENSDLAG00005016236	ENSDLAG00005033395	plppr5b (ENSDLAG00005031695)	snx7 (ENSDLAG00005002440)	ENSDLAG00005006789
Large yellow croaker	MODERN SPECIES	481	STIM2 (ENSLCRG00005017288)	ENSLCRG00005017291	ENSLCRG00005017292	crmp1 (ENSLCRG00005017311)	WFS1 (ENSLCRG00005020444)	ppp2r2ca (ENSLCRG00005020446)	ENSLCRG00005020451	hpf1 (ENSLCRG00005020456)	ENSLCRG00005020483	camk2d2 (ENSLCRG00005022490)	ENSLCRG00005022995	CXCL8 (ENSLCRG00005022997)	polr1e (ENSLCRG00005022998)	UBA6 (ENSLCRG00005023013)	POLQ (ENSLCRG00005023449)	abcd3a (ENSLCRG00005023539) ##22	f3a (ENSLCRG00005023653)	cnn3b (ENSLCRG00005023655)	STEAP2 (ENSLCRG00005002394)	mos (ENSLCRG00005002399)	plag1 (ENSLCRG00005002403)	chchd7 (ENSLCRG00005002409)	ENSLCRG00005002429	ENSLCRG00005002444	ENSLCRG00005002454	ENSLCRG00005002463	ENSLCRG00005002467	ENSLCRG00005002473	ENSLCRG00005002478	ENSLCRG00005002482	ENSLCRG00005002488
Pinecone sodierfish	MODERN SPECIES	12	ENSMMDG00005024997	MMP16 (ENSMMDG00005024998)	pomp (ENSMMDG00005025000)	RSU1 (ENSMMDG00005025001)	C1QL3 (ENSMMDG00005025002)	ENSMMDG00005025003	CUBN (ENSMMDG00005025004)	trdmt1 (ENSMMDG00005025005)	vim (ENSMMDG00005025006)	ENSMMDG00005025007	PDE1C (ENSMMDG00005025008)	ENSMMDG00005025009	neurod6a (ENSMMDG00005025010)	ENSMMDG00005025011	AGL (ENSMMDG00005025012)	abcd3a (ENSMMDG00005025014) ##22	f3a (ENSMMDG00005025048)	cnn3b (ENSMMDG00005025049)	alg14 (ENSMMDG00005025050)	STEAP2 (ENSMMDG00005025051)	ift74 (ENSMMDG00005025052)	ENSMMDG00005025053	ENSMMDG00005025054	ENSMMDG00005025055	ENSMMDG00005025056	vstm2a (ENSMMDG00005025057)	HECW1 (ENSMMDG00005025058)	stk17a (ENSMMDG00005025059)	ENSMMDG00005025060	ENSMMDG00005025061	lancl2 (ENSMMDG00005025062)
Cod	MODERN SPECIES	15	ENSGMOG00000024567	ENSGMOG00000013775	ENSGMOG00000013761	ENSGMOG00000017113	VAV3 (ENSGMOG00000016597)	NTNG1 (ENSGMOG00000016565)	prmt6 (ENSGMOG00000025856)	rnpc3 (ENSGMOG00000019213)	col11a1a (ENSGMOG00000019164)	olfm3a (ENSGMOG00000022760)	ENSGMOG00000019143	abca4a (ENSGMOG00000019107)	ENSGMOG00000019084	ENSGMOG00000025319	ENSGMOG00000031704	ABCD3 (ENSGMOG00000015172) ##22	ENSGMOG00000015215	ENSGMOG00000003813	pde7a (ENSGMOG00000029592)	ENSGMOG00000033861	armc1 (ENSGMOG00000009251)	bhlhe22 (ENSGMOG00000014009)	ythdf3 (ENSGMOG00000014950)	tagln3b (ENSGMOG00000014986)	ENSGMOG00000025355	ENSGMOG00000032713	c1qtnf9 (ENSGMOG00000014997)	ENSGMOG00000027947	ENSGMOG00000029467	ENSGMOG00000015009	ENSGMOG00000015036
Protacanthopterygii	ANCESTRAL SPECIES	65	ENSGT00390000005140.b.b	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00940000155667.b.a	ENSGT00400000023530.b	ENSGT00940000155252.fb.a	ENSGT00940000153601.a.b.c	ENSGT00940000160961	ENSGT00940000163532	ENSGT00530000063786.a	ENSGT00940000154535.D.vb.a	ENSGT00940000156998.j.a	ENSGT00950000182886.a.a.a.c	ENSGT00940000155624.a.a	ENSGT00950000183110.b.b.k.a	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000012668.g.a	ENSGT00940000154539.a.a.c	ENSGT00390000002579.c	ENSGT01010000222313.A.b.a.d.h	ENSGT00390000004175.a	ENSGT01050000244924.a.b.g	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610.c.c.a	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00980000198918	ENSGT00940000157704.a.b	ENSGT00390000012596.f	ENSGT00940000164178
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	745													ENSGT00940000156998.j.a.d	ENSGT00950000182886.a.a.a.c.h	ENSGT00950000183110.b.b.k.a.f.a	ENSGT00950000182955.a.a.a.g.e ##22	ENSGT00390000016735.gb.b.b	ENSGT00390000012668.g.a.f	ENSGT00940000154539.a.a.c.a	ENSGT00390000002579.c	ENSGT01010000222313.A.b.a.d.h.d	ENSGT00390000004175.a.d	ENSGT01050000244924.a.b.g.f
Salmoninae_a	ANCESTRAL SPECIES	35	ENSGT00940000161292.h	ENSGT00940000157649.f	ENSGT00390000010687.a.a.b	ENSGT00940000160622.ab.c	ENSGT00390000005140.b.b.m.a	ENSGT01030000234629.D.c	ENSGT00940000157975.y.b	ENSGT00940000155667.b.a.d	ENSGT00940000153601.a.b.c.d	ENSGT00940000160961.i.b	ENSGT01100000264448.a	ENSGT00940000154535.D.vb.a.p	ENSGT00940000156998.j.a.d	ENSGT00950000182886.a.a.a.c.h	ENSGT00950000183110.b.b.k.a.f.a	ENSGT00950000182955.a.a.a.g.e ##22	ENSGT00390000016735.gb.b.b	ENSGT00390000012668.g.a.f	ENSGT00940000154539.a.a.c.a	ENSGT00390000002579.c	ENSGT01010000222313.A.b.a.d.g.d	ENSGT00940000159454.i	ENSGT00950000183021.a.a.a.a.i.a	ENSGT00510000046470.a.a.a.h	ENSGT01090000260093.a.c	ENSGT00950000182978.A.a.b.a.d	ENSGT00940000160438.d.a	ENSGT00940000156118.d.b.c	ENSGT00940000161902.a.b.b	ENSGT00390000008325.b.b	ENSGT00950000182878.b.a.l
Salmo	ANCESTRAL SPECIES	67	ENSGT00940000160622.ab.c	ENSGT00390000005140.b.b.m.a	ENSGT01030000234629.D.c	ENSGT00940000157975.y.b	ENSGT00940000155667.b.a.d	ENSGT01100000263837.A	ENSGT00940000155252.fb.a.f.b	ENSGT00940000153601.a.b.c.d	ENSGT00940000160961.i.b	ENSGT01100000264772.a	ENSGT01100000264448.a	ENSGT00940000154535.D.vb.a.p	ENSGT00940000156998.j.a.d	ENSGT00950000182886.a.a.a.c.h	ENSGT00950000183110.b.b.k.a.f.a	ENSGT00950000182955.a.a.a.g.e ##22	ENSGT00390000016735.gb.b.b	ENSGT00390000012668.g.a.f	ENSGT00940000154539.a.a.c.a	ENSGT00390000002579.c	ENSGT01010000222313.A.b.a.d.h.d	ENSGT00390000004175.a.d	ENSGT01050000244924.a.b.g.f	ENSGT00940000158610.c.c.b	ENSGT01030000234583.a.a.d.m.b.a	ENSGT00940000159454.i	ENSGT00950000183021.a.a.a.a.i.a	ENSGT00510000046470.a.a.a.h	ENSGT01090000260093.a.c	ENSGT00950000182978.A.a.b.a.c.b.a.b	ENSGT00940000160438.d.a
Atlantic salmon	MODERN SPECIES	21	ENSSSAG00000067081	ENSSSAG00000113722	arhg4 (ENSSSAG00000067603)	ENSSSAG00000091470	ENSSSAG00000116299	ENSSSAG00000067646	ENSSSAG00000112101	VAV3 (ENSSSAG00000067657)	NTNG1 (ENSSSAG00000093541)	ENSSSAG00000067688	ENSSSAG00000067700	col11a1a (ENSSSAG00000091663)	olfm3a (ENSSSAG00000067706)	ENSSSAG00000009320	ARHGAP29 (ENSSSAG00000067720)	ABCD3 (ENSSSAG00000103268) ##22	F3 (ENSSSAG00000067842)	CNN3 (ENSSSAG00000102239)	alg14 (ENSSSAG00000067846)	TLCD4 (ENSSSAG00000121092)	ENSSSAG00000109070	ENSSSAG00000008866	ENSSSAG00000008941	ENSSSAG00000009216	ENSSSAG00000096294	ENSSSAG00000120558	ENSSSAG00000010589	ENSSSAG00000010485	prdm14 (ENSSSAG00000009261)	ncoa2 (ENSSSAG00000121544)	tr1l1 (ENSSSAG00000113653)
River trout	MODERN SPECIES	36	ENSSTUG00000019807	ENSSTUG00000019803	VAV3 (ENSSTUG00000019568)	ENSSTUG00000019543	ENSSTUG00000019541	ENSSTUG00000019538	NTNG1 (ENSSTUG00000019528)	prmt6 (ENSSTUG00000019505)	ENSSTUG00000019471	ENSSTUG00000019460	ENSSTUG00000019443	col11a1a (ENSSTUG00000019428)	olfm3a (ENSSTUG00000019402)	ENSSTUG00000019399	ARHGAP29 (ENSSTUG00000018833)	abcd3a (ENSSTUG00000015045) ##22	acp5b (ENSSTUG00000014915)	f3a (ENSSTUG00000014909)	CNN3 (ENSSTUG00000014863)	alg14 (ENSSTUG00000014839)	TLCD4 (ENSSTUG00000014826)	HCCS (ENSSTUG00000014727)	ptbp2a (ENSSTUG00000014622)	ENSSTUG00000014612	ENSSTUG00000014610	ENSSTUG00000014607	ENSSTUG00000014595	plppr5b (ENSSTUG00000014588)	ENSSTUG00000014578	ENSSTUG00000014569	ENSSTUG00000014553
Oncorhynchus	ANCESTRAL SPECIES	27	ENSGT00500000044993.f	ENSGT00940000158760.d	ENSGT00940000161292.h	ENSGT00940000179453	ENSGT00940000157649.f	ENSGT00390000010687.a.a.b	ENSGT00940000160622.ab.c	ENSGT00390000005140.b.b.m.a	ENSGT01030000234629.D.c	ENSGT00940000157975.y.b	ENSGT00940000153601.a.b.c.d	ENSGT01100000264448.a	ENSGT00940000154535.D.vb.a.p	ENSGT00940000156998.j.a.d	ENSGT00950000182886.a.a.a.c.h	ENSGT00950000182955.a.a.a.g.e ##22	ENSGT00390000016735.gb.b.b	ENSGT00390000012668.g.a.f	ENSGT00940000154539.a.a.c.a	ENSGT00390000002579.c	ENSGT01010000222313.A.b.a.d.h.d	ENSGT01050000244924.a.b.g.f	ENSGT01100000264200.a	ENSGT00940000158610.c.c.b	ENSGT01030000234583.a.a.d.m.b.d	ENSGT00940000159454.i	ENSGT00510000046470.b	ENSGT01090000260093.a.c	ENSGT00950000182978.A.a.b.a.d	ENSGT00940000160438.d.a	ENSGT00940000156118.d.b.c
Oncorhynchus_a	ANCESTRAL SPECIES	89	ENSGT00500000044993.f	ENSGT00940000158760.d	ENSGT00940000161292.h	ENSGT00940000179453	ENSGT00940000157649.f	ENSGT00390000010687.a.a.b	ENSGT00940000160622.ab.c	ENSGT00390000005140.b.b.m.a	ENSGT01030000234629.D.c	ENSGT00940000157975.y.b	ENSGT00940000153601.a.b.c.d	ENSGT01100000264448.a	ENSGT00940000154535.D.vb.a.p	ENSGT00940000156998.j.a.d	ENSGT00950000182886.a.a.a.c.h	ENSGT00950000182955.a.a.a.g.e ##22	ENSGT00390000016735.gb.b.b	ENSGT00390000012668.g.a.f	ENSGT00940000154539.a.a.c.a	ENSGT00390000002579.c	ENSGT01010000222313.A.b.a.d.h.d	ENSGT01050000244924.a.b.g.f	ENSGT01100000264200.a	ENSGT00940000158610.c.c.b	ENSGT00940000159454.i	ENSGT00510000046470.b	ENSGT01090000260093.a.c	ENSGT00950000182978.A.a.b.a.d	ENSGT00940000160438.c	ENSGT00940000156118.d.b.c	ENSGT00940000161902.a.b.b
Chinook salmon	MODERN SPECIES	21	SOCS6 (ENSOTSG00005004141)	dok6 (ENSOTSG00005004138)	CHST2 (ENSOTSG00005004137)	ENSOTSG00005004136	pcolce2b (ENSOTSG00005003864)	u2surp (ENSOTSG00005003858)	ENSOTSG00005003856	fam168b (ENSOTSG00005003853)	fbxo45 (ENSOTSG00005003852)	nrros (ENSOTSG00005003850)	ENSOTSG00005003849	ENSOTSG00005003848	NTNG1 (ENSOTSG00005003847)	ENSOTSG00005003815	ENSOTSG00005003684	abcd3a (ENSOTSG00005003509) ##22	acp5b (ENSOTSG00005003496)	f3a (ENSOTSG00005003494)	CNN3 (ENSOTSG00005003492)	alg14 (ENSOTSG00005003490)	TLCD4 (ENSOTSG00005003488)	ENSOTSG00005003487	ENSOTSG00005003485	plppr5b (ENSOTSG00005003484)	ENSOTSG00005003481	ENSOTSG00005003480	ENSOTSG00005003478	rpl7 (ENSOTSG00005003349)	dipk2ab (ENSOTSG00005003347)	plod2 (ENSOTSG00005003345)	ENSOTSG00005003340
Coho salmon	MODERN SPECIES	2	PCOLCE2 (ENSOKIG00005002533)	U2SURP (ENSOKIG00005002680)	ENSOKIG00005002778	FAM168B (ENSOKIG00005002836)	fbxo45 (ENSOKIG00005002866)	nrros (ENSOKIG00005002882)	VAV3 (ENSOKIG00005002923)	ENSOKIG00005002950	NTNG1 (ENSOKIG00005002957)	ENSOKIG00005002971	ENSOKIG00005002977	col11a1a (ENSOKIG00005003044)	ENSOKIG00005003204	OLFM3 (ENSOKIG00005003217)	ENSOKIG00005003243	abcd3a (ENSOKIG00005003552) ##22	acp5b (ENSOKIG00005005732)	f3a (ENSOKIG00005005751)	CNN3 (ENSOKIG00005005767)	alg14 (ENSOKIG00005005799)	TLCD4 (ENSOKIG00005005812)	PTBP2 (ENSOKIG00005005836)	ENSOKIG00005005917	ENSOKIG00005005928	PLPPR5 (ENSOKIG00005005943)	ENSOKIG00005005961	ENSOKIG00005005973	prdm14 (ENSOKIG00005005983)	ENSOKIG00005006002	ncoa2 (ENSOKIG00005006042)	ENSOKIG00005006304
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000076655	ENSOMYG00000050281	ENSOMYG00000017838	ENSOMYG00000010932	ENSOMYG00000076399	ENSOMYG00000017809	ENSOMYG00000017747	ENSOMYG00000059391	ENSOMYG00000059588	ENSOMYG00000077746	col11a1a (ENSOMYG00000064854)	ENSOMYG00000021889	ENSOMYG00000071604	ENSOMYG00000021866	ENSOMYG00000059315	abcd3a (ENSOMYG00000018547) ##22	ENSOMYG00000057096	f3a (ENSOMYG00000018368)	ENSOMYG00000061200	CNN3 (ENSOMYG00000018327)	ALG14 (ENSOMYG00000018306)	TLCD4 (ENSOMYG00000075015)	PTBP2 (ENSOMYG00000057378)	ENSOMYG00000049549	ENSOMYG00000063440	ENSOMYG00000018275	ENSOMYG00000050707	ENSOMYG00000018248	prdm14 (ENSOMYG00000018239)	ENSOMYG00000066853	ENSOMYG00000057180
Huchen	MODERN SPECIES	1981												olfm3a (ENSHHUG00000001732)	ENSHHUG00000001751	ARHGAP29 (ENSHHUG00000001902)	ENSHHUG00000001912	abcd3a (ENSHHUG00000001920) ##22	acp5b (ENSHHUG00000002343)	f3a (ENSHHUG00000002373)	CNN3 (ENSHHUG00000002385)
Salmoninae	ANCESTRAL SPECIES	33	ENSGT01030000234629.D.d	ENSGT00940000157975.y.a	ENSGT00940000155667.b.a.c	ENSGT00400000023530.b	ENSGT00940000155252.fb.a.f.a	ENSGT00940000155252.fb.a.e	ENSGT00940000153601.a.b.c.c	ENSGT00940000160961.j	ENSGT00940000163532	ENSGT00530000063786.a	ENSGT00940000154535.D.vb.a	ENSGT00940000156998.j.a.c	ENSGT00950000182886.a.a.a.c.g	ENSGT00940000155624.a.a	ENSGT00950000183110.b.b.k.a.e	ENSGT00950000182955.a.a.a.g.f ##22	ENSGT00390000016735.gb.b.a	ENSGT00390000012668.g.a.e	ENSGT00940000154539.a.a.c.b	ENSGT00390000002579.d	ENSGT01010000222313.A.b.a.d.h.c	ENSGT00390000004175.a.c	ENSGT01050000244924.a.b.g.e	ENSGT00500000044896.ab	ENSGT00940000155315	ENSGT00940000158610.c.c.a	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00980000198918	ENSGT00940000157704.a.b	ENSGT00390000012596.f
Salmoninae_a	ANCESTRAL SPECIES	32	ENSGT00390000005140.b.b.m.b	ENSGT01030000234629.D.d	ENSGT00940000157975.y.a	ENSGT00940000155667.b.a.c	ENSGT00400000023530.b	ENSGT00940000155252.fb.a.f.a	ENSGT00940000153601.a.b.c.c	ENSGT00940000160961.j	ENSGT00940000163532	ENSGT00530000063786.a	ENSGT00940000154535.D.vb.a.o	ENSGT00940000156998.j.a.c	ENSGT00950000182886.a.a.a.c.g	ENSGT00940000155624.a.a	ENSGT00950000183110.b.b.k.a.e	ENSGT00950000182955.a.a.a.g.f ##22	ENSGT00390000016735.gb.b.a	ENSGT00390000012668.g.a.e	ENSGT00940000154539.a.a.c.b	ENSGT00390000002579.d	ENSGT01010000222313.A.b.a.d.h.c	ENSGT00390000004175.a.c	ENSGT01050000244924.a.b.g.e	ENSGT00500000044896.ab	ENSGT00940000155315	ENSGT00940000158610.c.c.a	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00980000198918	ENSGT00940000157704.a.b	ENSGT00390000012596.f
Oncorhynchus	ANCESTRAL SPECIES	28	ENSGT00390000005140.b.b.m.b	ENSGT01030000234629.D.d	ENSGT00940000157975.y.a	ENSGT00940000155667.b.a.c	ENSGT00400000023530.b	ENSGT00940000155252.fb.a.f.a	ENSGT00940000153601.a.b.c.c	ENSGT00940000160961.j	ENSGT00940000163532	ENSGT00530000063786.a	ENSGT00940000154535.D.vb.a.o	ENSGT00940000156998.j.a.c	ENSGT00950000182886.a.a.a.c.g	ENSGT00940000155624.a.a	ENSGT00950000183110.b.b.k.a.e	ENSGT00950000182955.a.a.a.g.f ##22	ENSGT00390000016735.gb.b.a	ENSGT00390000012668.g.a.e	ENSGT00940000154539.a.a.c.b	ENSGT00390000002579.d	ENSGT01010000222313.A.b.a.d.h.c	ENSGT00390000004175.a.c	ENSGT01050000244924.a.b.g.e	ENSGT00500000044896.ab	ENSGT00940000155315	ENSGT00940000158610.c.c.a	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00980000198918	ENSGT00940000157704.a.b	ENSGT00390000012596.f
Rainbow trout	MODERN SPECIES	2	ENSOMYG00000013436	VAV3 (ENSOMYG00000013457)	NTNG1 (ENSOMYG00000013465)	prmt6 (ENSOMYG00000013468)	ENSOMYG00000056104	ENSOMYG00000013615	rnpc3 (ENSOMYG00000015006)	ENSOMYG00000060369	ENSOMYG00000015117	olfm3a (ENSOMYG00000015130)	ENSOMYG00000015149	abca4a (ENSOMYG00000015319)	ENSOMYG00000072005	ARHGAP29 (ENSOMYG00000015673)	ENSOMYG00000063292	abcd3a (ENSOMYG00000015974) ##22	ENSOMYG00000019125	f3a (ENSOMYG00000019166)	cnn3b (ENSOMYG00000019187)	ENSOMYG00000057909	ALG14 (ENSOMYG00000019199)	ENSOMYG00000057232	TLCD4 (ENSOMYG00000019212)	hccsb (ENSOMYG00000019246)	ptbp2a (ENSOMYG00000019400)	DPYD (ENSOMYG00000020023)	ENSOMYG00000074995	snx7 (ENSOMYG00000021016)	plppr5b (ENSOMYG00000021173)	ENSOMYG00000065946	ENSOMYG00000021191
Oncorhynchus_a	ANCESTRAL SPECIES	23	ENSGT00390000005140.b.b.m.b	ENSGT01030000234629.D.d	ENSGT00940000157975.y.a	ENSGT00940000155667.b.a.c	ENSGT00400000023530.b	ENSGT00940000155252.fb.a.f.a	ENSGT00940000153601.a.b.c.c	ENSGT00940000160961.j	ENSGT00940000163532	ENSGT00530000063786.a	ENSGT00940000154535.D.vb.a.o	ENSGT00940000156998.j.a.c	ENSGT00950000182886.a.a.a.c.g	ENSGT00940000155624.a.a	ENSGT00950000183110.b.b.k.a.e	ENSGT00950000182955.a.a.a.g.f ##22	ENSGT00390000016735.gb.b.a	ENSGT00390000012668.g.a.e	ENSGT00940000154539.a.a.c.b	ENSGT00390000002579.d	ENSGT01010000222313.A.b.a.d.h.c	ENSGT00390000004175.a.c	ENSGT01050000244924.a.b.g.e	ENSGT00500000044896.ab	ENSGT00940000155315	ENSGT00940000158610.c.c.a	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00980000198918	ENSGT00940000157704.a.b	ENSGT00390000012596.f
Coho salmon	MODERN SPECIES	9	fbxo45 (ENSOKIG00005046736)	nrros (ENSOKIG00005046733)	sh3glb1a (ENSOKIG00005046637)	ENSOKIG00005046608	ENSOKIG00005046604	VAV3 (ENSOKIG00005046520)	NTNG1 (ENSOKIG00005046492)	prmt6 (ENSOKIG00005046484)	amy2a (ENSOKIG00005045759)	rnpc3 (ENSOKIG00005045693)	ENSOKIG00005045652	olfm3a (ENSOKIG00005045636)	ENSOKIG00005045606	abca4a (ENSOKIG00005045425)	ARHGAP29 (ENSOKIG00005045311)	abcd3a (ENSOKIG00005042771) ##22	ENSOKIG00005042576	f3a (ENSOKIG00005042527)	cnn3b (ENSOKIG00005042467)	ALG14 (ENSOKIG00005042457)	TLCD4 (ENSOKIG00005042447)	hccsb (ENSOKIG00005042403)	ENSOKIG00005042393	ptbp2a (ENSOKIG00005041981)	ENSOKIG00005041957	DPYD (ENSOKIG00005039284)	snx7 (ENSOKIG00005038987)	plppr5b (ENSOKIG00005038928)	ENSOKIG00005038905	PALMD (ENSOKIG00005038890)	ENSOKIG00005038869
Chinook salmon	MODERN SPECIES	7	fam168b (ENSOTSG00005024201)	fbxo45 (ENSOTSG00005024203)	nrros (ENSOTSG00005024204)	sh3glb1a (ENSOTSG00005024213)	ENSOTSG00005024358	VAV3 (ENSOTSG00005024359)	NTNG1 (ENSOTSG00005024366)	prmt6 (ENSOTSG00005024367)	amy2a (ENSOTSG00005024379)	rnpc3 (ENSOTSG00005025861)	col11a1a (ENSOTSG00005025866)	olfm3a (ENSOTSG00005025875)	ENSOTSG00005025877	abca4a (ENSOTSG00005025904)	ARHGAP29 (ENSOTSG00005026300)	abcd3a (ENSOTSG00005026310) ##22	acp5b (ENSOTSG00005032462)	f3a (ENSOTSG00005032463)	cnn3b (ENSOTSG00005032474)	alg14 (ENSOTSG00005032476)	TLCD4 (ENSOTSG00005032477)	hccsb (ENSOTSG00005032478)	ptbp2a (ENSOTSG00005032483)	DPYD (ENSOTSG00005033292)	snx7 (ENSOTSG00005035608)	plppr5b (ENSOTSG00005035610)	ENSOTSG00005035611	PALMD (ENSOTSG00005035612)	ENSOTSG00005035614	FRRS1 (ENSOTSG00005035621)	AGL (ENSOTSG00005035700)
Salmo	ANCESTRAL SPECIES	3	ENSGT00390000005140.b.b.n	ENSGT01030000234629.D.d	ENSGT00940000157975.y.a	ENSGT00940000155667.b.a.c	ENSGT00400000023530.b	ENSGT00940000155252.fb.a.f.a	ENSGT00940000153601.a.b.c.c	ENSGT00940000160961.i.a	ENSGT00940000163532	ENSGT00530000063786.a	ENSGT00940000154535.D.vb.a.o	ENSGT00940000156998.j.a.c	ENSGT00950000182886.a.a.a.c.g	ENSGT00940000155624.a.a	ENSGT00950000183110.b.b.k.a.e	ENSGT00950000182955.a.a.a.g.f ##22	ENSGT00390000016735.gb.b.a	ENSGT00390000012668.g.a.e.a	ENSGT00390000012668.g.a.e.b	ENSGT00940000154539.a.a.c.b	ENSGT00390000002579.d	ENSGT01010000222313.A.b.a.d.h.c	ENSGT00390000004175.a.c	ENSGT01050000244924.a.b.g.e	ENSGT00500000044896.ab	ENSGT00940000155315	ENSGT00940000158610.c.c.a	ENSGT00940000156181.A	ENSGT00940000157718.d	ENSGT00980000198918	ENSGT00940000157704.a.b
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000094163	ENSSSAG00000110660	ENSSSAG00000067624	fbxo45 (ENSSSAG00000103200)	LRC33 (ENSSSAG00000045541)	ENSSSAG00000045550	VAV3 (ENSSSAG00000045787)	NTNG1 (ENSSSAG00000113237)	prmt6 (ENSSSAG00000122141)	ENSSSAG00000052787	col11a1a (ENSSSAG00000055939)	olfm3 (ENSSSAG00000055961)	ENSSSAG00000116431	abca4a (ENSSSAG00000093050)	ARHGAP29 (ENSSSAG00000056008)	ABCD3 (ENSSSAG00000115338) ##22	f3a (ENSSSAG00000087871)	f3a (ENSSSAG00000064227)	cnn3b (ENSSSAG00000064236)	ALG14 (ENSSSAG00000064239)	TLCD4 (ENSSSAG00000098226)	hccsb (ENSSSAG00000085392)	ptbp2a (ENSSSAG00000064262)	DPYD (ENSSSAG00000064538)	snx7 (ENSSSAG00000068631)	plppr5b (ENSSSAG00000068640)	ENSSSAG00000105285	ENSSSAG00000100688	ENSSSAG00000116412	PALMD (ENSSSAG00000068661)	ENSSSAG00000068669
River trout	MODERN SPECIES	11	fbxo45 (ENSSTUG00000001885)	nrros (ENSSTUG00000001893)	sh3glb1a (ENSSTUG00000001902)	ENSSTUG00000001942	VAV3 (ENSSTUG00000002005)	ENSSTUG00000002392	NTNG1 (ENSSTUG00000002404)	prmt6 (ENSSTUG00000002410)	amy2a (ENSSTUG00000002464)	rnpc3 (ENSSTUG00000003257)	col11a1a (ENSSTUG00000003319)	olfm3a (ENSSTUG00000003354)	ENSSTUG00000003380	abca4a (ENSSTUG00000003493)	ARHGAP29 (ENSSTUG00000004335)	abcd3a (ENSSTUG00000004616) ##22	acp5b (ENSSTUG00000005017)	f3a (ENSSTUG00000005026)	ENSSTUG00000005041	TLCD4 (ENSSTUG00000005070)	f3a (ENSSTUG00000005084)	ENSSTUG00000005171	cnn3b (ENSSTUG00000005173)	ENSSTUG00000005178	hccsb (ENSSTUG00000005184)	ptbp2a (ENSSTUG00000005204)	DPYD (ENSSTUG00000005749)	snx7 (ENSSTUG00000007966)	plppr5b (ENSSTUG00000008007)	ENSSTUG00000008039	PALMD (ENSSTUG00000008052)
Huchen	MODERN SPECIES	3				ENSHHUG00000018092	GFRA1 (ENSHHUG00000018100)	ATRNL1 (ENSHHUG00000018134)	ENSHHUG00000018357	amy2a (ENSHHUG00000018365)	rnpc3 (ENSHHUG00000018458)	ENSHHUG00000018477	ENSHHUG00000018491	olfm3a (ENSHHUG00000018494)	ENSHHUG00000018499	abca4a (ENSHHUG00000018530)	ARHGAP29 (ENSHHUG00000018977)	abcd3a (ENSHHUG00000019055) ##22	acp5b (ENSHHUG00000019313)	f3a (ENSHHUG00000019329)	CNN3 (ENSHHUG00000019343)	alg14 (ENSHHUG00000019374)	TLCD4 (ENSHHUG00000019385)	hccsb (ENSHHUG00000019394)	ptbp2a (ENSHHUG00000019401)	DPYD (ENSHHUG00000019474)	snx7 (ENSHHUG00000019602)	plppr5b (ENSHHUG00000019639)	ENSHHUG00000019692	PALMD (ENSHHUG00000019702)	FRRS1 (ENSHHUG00000019720)	AGL (ENSHHUG00000019862)	ENSHHUG00000020030
Northern pike	MODERN SPECIES	20	fam168b (ENSELUG00000002179)	nrros (ENSELUG00000002183)	sh3glb1a (ENSELUG00000002192)	ENSELUG00000002200	VAV3 (ENSELUG00000002208)	NTNG1 (ENSELUG00000002232)	prmt6 (ENSELUG00000002245)	ENSELUG00000002253	ENSELUG00000002247	rnpc3 (ENSELUG00000002264)	ENSELUG00000002283	olfm3a (ENSELUG00000002299)	ENSELUG00000002311	abca4a (ENSELUG00000002360)	ARHGAP29 (ENSELUG00000002388)	abcd3a (ENSELUG00000002416) ##22	ppa5 (ENSELUG00000002437)	f3a (ENSELUG00000002446)	cnn3b (ENSELUG00000002456)	alg14 (ENSELUG00000031719)	TLCD4 (ENSELUG00000002492)	ptbp2a (ENSELUG00000002502)	DPYD (ENSELUG00000002581)	snx7 (ENSELUG00000002623)	plppr5b (ENSELUG00000002639)	ENSELUG00000002658	PALMD (ENSELUG00000002673)	ENSELUG00000031750	FRRS1 (ENSELUG00000002693)	ENSELUG00000002707	eif1b (ENSELUG00000026894)
Osteoglossiformes	ANCESTRAL SPECIES	5						ENSGT00390000018540.f	ENSGT00940000164061.c.a	ENSGT00940000160837	ENSGT00940000157657.d	ENSGT00950000183207.a	ENSGT00940000155829	ENSGT00940000159846.a.b	ENSGT00940000159742.rb.f	ENSGT00940000155624.a.a	ENSGT00950000183110.b.b.k.a	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00390000012668.i.a	ENSGT00940000154539.a.a.g.a	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT01050000244924.a.b.g	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610.c	ENSGT00940000156181.B.n	ENSGT00940000157718.d	ENSGT00940000157704.a.b	ENSGT00940000164178	ENSGT00390000012166.c.a	ENSGT00390000012166.c.b
P. kingsleyae	MODERN SPECIES	75				RECK (ENSPKIG00000009881)	col15a1b (ENSPKIG00000009806)	GFOD1 (ENSPKIG00000009779)	SLC12A7 (ENSPKIG00000009615)	aoc1 (ENSPKIG00000009531)	ENSPKIG00000009511	ENSPKIG00000009351	KCNH2 (ENSPKIG00000009282)	ENSPKIG00000009102	ENSPKIG00000008997	ENSPKIG00000008970	ARHGAP29 (ENSPKIG00000008902)	abcd3a (ENSPKIG00000008743) ##22	acp5b (ENSPKIG00000008674)	f3a (ENSPKIG00000008650)	CNN3 (ENSPKIG00000008616)	alg14 (ENSPKIG00000008593)	TLCD4 (ENSPKIG00000008560)	ptbp2a (ENSPKIG00000008503)	DPYD (ENSPKIG00000008228)	snx7 (ENSPKIG00000008019)	plppr5b (ENSPKIG00000007935)	PLPPR4 (ENSPKIG00000007861)	ENSPKIG00000007822	FRRS1 (ENSPKIG00000007771)	ENSPKIG00000007755	ENSPKIG00000007731	ENSPKIG00000007685
Asian bonytongue	MODERN SPECIES	24	stk17a (ENSSFOG00015010305)	ENSSFOG00015010296	lancl2 (ENSSFOG00015031252)	tgfbr1b (ENSSFOG00015027494)	RECK (ENSSFOG00015010141)	ENSSFOG00015010077	GFOD1 (ENSSFOG00015010067)	ENSSFOG00015010014	ENSSFOG00015009896	aoc1 (ENSSFOG00015009863)	ENSSFOG00015009643	KCNH2 (ENSSFOG00015009491)	ENSSFOG00015009354	abca4a (ENSSFOG00015009236)	ARHGAP29 (ENSSFOG00015009173)	abcd3a (ENSSFOG00015009071) ##22	acp5b (ENSSFOG00015009046)	f3a (ENSSFOG00015031987)	CNN3 (ENSSFOG00015029995)	alg14 (ENSSFOG00015008991)	TLCD4 (ENSSFOG00015033186)	ptbp2a (ENSSFOG00015008931)	ENSSFOG00015030431	DPYD (ENSSFOG00015008674)	snx7 (ENSSFOG00015029194)	plppr5b (ENSSFOG00015008600)	PLPPR4 (ENSSFOG00015008558)	PALMD (ENSSFOG00015025676)	ENSSFOG00015008497	FRRS1 (ENSSFOG00015008454)	ENSSFOG00015005792
Osteoglossocephalai	ANCESTRAL SPECIES	175	ENSGT00940000155252.fb.a	ENSGT00940000153601.a.b.c	ENSGT00940000160961	ENSGT00940000163532	ENSGT00940000163518	ENSGT00530000063786.a	ENSGT00940000154535.D.vb.a	ENSGT00940000156998	ENSGT00950000182886.a.a.a.c	ENSGT00940000155624.a.a	ENSGT00950000183110.b.b.k.a	ENSGT00950000182955.a.a.a.g ##22	ENSGT00390000016735	ENSGT00940000155624.b	ENSGT00950000183110.b.b.k.b	ENSGT00950000182955.a.a.a.h ##22	ENSGT00390000012668	ENSGT00940000154539.a.a	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT01050000244924.a.b.g	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610.c	ENSGT00390000000954	ENSGT01050000244924.a.b.h	ENSGT00940000158610.d	ENSGT00940000156181.B	ENSGT00940000157718.c	ENSGT00940000157704.a.a
Clupeocephala	ANCESTRAL SPECIES	252						ENSGT00940000155667.b.b	ENSGT00400000023530.a	ENSGT00940000155252.fb.b	ENSGT00940000153601.a.b.d	ENSGT00940000154802	ENSGT00940000154535.D.vb.b.b	ENSGT00940000156998.j.b	ENSGT00950000182886.a.a.a.d	ENSGT00940000155624.a.b	ENSGT00950000183110.b.b.k.b	ENSGT00950000182955.a.a.a.h ##22	ENSGT00390000012668.g.b	ENSGT01010000222313.A.b.a.d.g	ENSGT00390000004175.b	ENSGT00390000000954	ENSGT01050000244924.a.b.h	ENSGT00940000158610.d	ENSGT00940000156181.B	ENSGT00940000157718.c	ENSGT00940000157704.a.a	ENSGT00390000012596.e	ENSGT00940000164640	ENSGT00940000157757.g.b	ENSGT00940000173026
Otomorpha	ANCESTRAL SPECIES	212						ENSGT00940000155667.b.b	ENSGT00400000023530.a	ENSGT00940000155252.fb.b	ENSGT00940000153601.a.b.d	ENSGT00940000163532	ENSGT00940000154535.D.vb.b.a.b	ENSGT00940000156998.j.b	ENSGT00950000182886.a.a.a.d	ENSGT00940000155624.a.b	ENSGT00950000183110.b.b.k.b	ENSGT00950000182955.a.a.a.h ##22	ENSGT00390000012668.g.b	ENSGT00940000154539.a.a.e	ENSGT01010000222313.A.b.a.d.g	ENSGT00390000004175.b	ENSGT00390000000954	ENSGT01050000244924.a.b.h	ENSGT00940000158610.d	ENSGT00940000156181.B	ENSGT00940000157718.c	ENSGT00940000175356	ENSGT00940000157704.a.a	ENSGT00390000012596.e	ENSGT00940000164640	ENSGT00940000157757.g.b	ENSGT00930000151041
Otophysi	ANCESTRAL SPECIES	5	ENSGT00940000155511.n.b	ENSGT00940000155807.b	ENSGT00940000155714	ENSGT00530000063529.C	ENSGT00940000160622.ab.b	ENSGT00940000155667.b.b	ENSGT00400000023530.a	ENSGT00940000155252.fb.b	ENSGT00940000153601.a.b.d	ENSGT00940000163532	ENSGT00940000154535.D.vb.b.a.b	ENSGT00940000156998.j.b	ENSGT00950000182886.a.a.a.d	ENSGT00940000155624.a.b	ENSGT00950000183110.b.b.k.b	ENSGT00950000182955.a.a.a.h ##22	ENSGT00390000012668.g.b	ENSGT00940000154539.a.a.e	ENSGT01010000222313.A.b.a.d.g.a	ENSGT00390000004175.b	ENSGT00390000000954	ENSGT01050000244924.a.b.h	ENSGT00940000158610.d	ENSGT00940000156181.B	ENSGT00940000157718.c	ENSGT00940000175356	ENSGT00940000157704.a.a	ENSGT00390000012596.e	ENSGT00940000178091	ENSGT00940000164640	ENSGT00940000157757.g.b
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.a.h.a ##22
Cyprininae	ANCESTRAL SPECIES	660										ENSGT00940000154535.D.vb.b.a.a.b.a	ENSGT00940000156998.j.b.e	ENSGT00940000155624.a.b.a	ENSGT00950000183110.b.b.k.b.a	ENSGT00950000182955.a.a.a.h.b.b ##22	ENSGT00940000171175	ENSGT00950000182955.a.a.a.h.a ##22	ENSGT00390000012668.g.b.b	ENSGT00940000154539.a.a.e.b	ENSGT01010000222313.A.b.a.d.g.a.a	ENSGT00390000004175.b.a	ENSGT00390000000954	ENSGT01050000244924.a.b.h.a	ENSGT00500000044896.gb.a.a
Cyprininae_a	ANCESTRAL SPECIES	4	ENSGT00940000155807.b.b	ENSGT00940000155714.l	ENSGT00940000160622.ab.b.a	ENSGT00940000155667.b.b.a	ENSGT00400000023530.a.b	ENSGT00940000155252.fb.b.c	ENSGT00940000153601.a.b.d.c	ENSGT00940000163518.k.b.e	ENSGT00940000154535.D.vb.b.a.a.a	ENSGT00940000156998.j.b.e	ENSGT00950000182886.a.a.a.d.b	ENSGT00940000155624.a.b.a	ENSGT00950000183110.b.b.k.b.a	ENSGT00950000182955.a.a.a.h.b.b ##22	ENSGT00940000171175	ENSGT00950000182955.a.a.a.h.a ##22	ENSGT00390000012668.g.b.b	ENSGT00940000154539.a.a.e.b	ENSGT01010000222313.A.b.a.d.g.a.a	ENSGT00390000004175.b.a	ENSGT00390000000954	ENSGT01050000244924.a.b.h.a	ENSGT00500000044896.gb.a.a	ENSGT00940000158610.d.c	ENSGT00940000156181.B.f	ENSGT00940000157718.c.a	ENSGT00940000175356.g	ENSGT00940000157704.a.a.c	ENSGT00390000012596.e.a.b	ENSGT00940000178091	ENSGT00940000164640.i
Golden-line barbel	MODERN SPECIES	187							vav3b (ENSSGRG00000031278)	NTNG1 (ENSSGRG00000031277)	ENSSGRG00000031276	ENSSGRG00000031164	ENSSGRG00000031157	ENSSGRG00000031144	tecrl2b (ENSSGRG00000031143)	ABCA4 (ENSSGRG00000030702)	arhgap29b (ENSSGRG00000030631)	ENSSGRG00000030630 ##22	F3 (ENSSGRG00000030629)	cnn3b (ENSSGRG00000030627)	si:dkey-10f21.4 (ENSSGRG00000030625)	hccsa.1 (ENSSGRG00000030624)	RWDD3 (ENSSGRG00000030623)	ptbp2b (ENSSGRG00000030245)	dpydb (ENSSGRG00000029381)	plppr5a (ENSSGRG00000029346)	PLPPR4 (ENSSGRG00000029344)	ENSSGRG00000029343	ENSSGRG00000029341	FRRS1 (ENSSGRG00000029339)	agla (ENSSGRG00000029261)	ENSSGRG00000029260	ENSSGRG00000029259
Cyprinoidei	ANCESTRAL SPECIES	21	ENSGT00940000155714.k	ENSGT00530000063529.C	ENSGT00940000160622.ab.b	ENSGT00940000155667.b.b	ENSGT00400000023530.a	ENSGT00940000155252.gb	ENSGT00940000174945	ENSGT00940000155252.fb.b	ENSGT00940000153601.a.b.d	ENSGT00940000163532	ENSGT00940000154535.D.vb.b.a.b	ENSGT00940000156998.j.b	ENSGT00950000182886.a.a.a.d	ENSGT00940000155624.a.b	ENSGT00950000183110.b.b.k.b	ENSGT00950000182955.a.a.a.h.b ##22	ENSGT00390000012668.g.b	ENSGT00940000154539.a.a.e	ENSGT01010000222313.A.b.a.d.g.a	ENSGT00390000004175.b.a	ENSGT00940000158610.d	ENSGT00940000156181.B	ENSGT00940000157718.c	ENSGT00940000175356	ENSGT00980000198918.b	ENSGT00940000157704.a.a	ENSGT00390000012596.e.a	ENSGT00940000178091	ENSGT00940000164640	ENSGT00940000157757.g.b	ENSGT00930000151041
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	8	ENSGT00940000155511.n.b.b	ENSGT00940000155807.b.a	ENSGT00940000155714.k	ENSGT00530000063529.C	ENSGT00940000160622.ab.b.b	ENSGT00940000155667.b.b.b	ENSGT00400000023530.a.a	ENSGT00940000155252.fb.b.d	ENSGT00940000153601.a.b.d.d	ENSGT00940000163518.k.b.f	ENSGT00940000154535.D.vb.b.a.b	ENSGT00940000156998.j.b.f	ENSGT00950000182886.a.a.a.d	ENSGT00940000155624.a.b.b	ENSGT00950000183110.b.b.k.b.b	ENSGT00950000182955.a.a.a.h.b.a ##22	ENSGT00390000012668.g.b.a	ENSGT00940000154539.a.a.e.a	ENSGT01010000222313.A.b.a.d.g.a.b	ENSGT01050000244924.a.b.h.b	ENSGT00500000044896.gb.a.b	ENSGT00940000158610.d.d	ENSGT00940000156181.B.e	ENSGT00940000157718.c.b	ENSGT00940000175356.h	ENSGT00940000157704.a.a.d	ENSGT00390000012596.e.a.a	ENSGT00940000164178.eb	ENSGT00940000164640.j	ENSGT00940000157757.g.b.c	ENSGT00930000151041.d
Cyprininae_a	ANCESTRAL SPECIES	65	ENSGT00940000155807.b.a	ENSGT00940000155714.k	ENSGT00530000063529.C	ENSGT00940000160622.ab.b.b	ENSGT00940000155667.b.b.b	ENSGT00400000023530.a.a	ENSGT00940000174945	ENSGT00940000155252.fb.b.d	ENSGT00940000153601.a.b.d.d	ENSGT00940000163518.k.b.f	ENSGT00940000154535.D.vb.b.a.a.b.b	ENSGT00940000156998.j.b.f	ENSGT00950000182886.a.a.a.d.a	ENSGT00940000155624.a.b.b	ENSGT00950000183110.b.b.k.b.b	ENSGT00950000182955.a.a.a.h.b.a ##22	ENSGT00390000012668.g.b.a	ENSGT00940000154539.a.a.e.a	ENSGT01010000222313.A.b.a.d.g.a.b	ENSGT01050000244924.a.b.h.b	ENSGT00500000044896.gb.a.b	ENSGT00940000158610.d.d	ENSGT00940000156181.B.e	ENSGT00940000157718.c.b	ENSGT00940000175356.h	ENSGT00940000157704.a.a.d	ENSGT00390000012596.e.a.a	ENSGT00940000164640.j	ENSGT00940000157757.g.b.c	ENSGT00930000151041.d	ENSGT00940000166019.k.b.b
Golden-line barbel	MODERN SPECIES	943									ENSSGRG00000001288	ENSSGRG00000001281	OLFM3 (ENSSGRG00000050380)	tecrl2b (ENSSGRG00000050378)	ABCA4 (ENSSGRG00000050113)	ENSSGRG00000050105	arhgap29b (ENSSGRG00000050103)	abcd3b (ENSSGRG00000049156) ##22	F3 (ENSSGRG00000049150)
Common carp reference	MODERN SPECIES	21	ENSCCRG00000049283	ENSCCRG00000075410	ENSCCRG00000009147	sh3glb1b (ENSCCRG00000008938)	selenoj (ENSCCRG00000018133)	ENSCCRG00000064844	vav3b (ENSCCRG00000074751)	ENSCCRG00000072416	ENSCCRG00000080492	ENSCCRG00000005680	ENSCCRG00000023540	ENSCCRG00000028841	tecrl2b (ENSCCRG00000028827)	ABCA4 (ENSCCRG00000047947)	arhgap29b (ENSCCRG00000017324)	abcd3b (ENSCCRG00000023293) ##22	F3 (ENSCCRG00000023253)	cnn3b (ENSCCRG00000082627)	si:dkey-10f21.4 (ENSCCRG00000033161)	hccsa.1 (ENSCCRG00000029057)	ENSCCRG00000021006	ptbp2b (ENSCCRG00000006192)	dpydb (ENSCCRG00000025490)	plppr5a (ENSCCRG00000055655)	PLPPR4 (ENSCCRG00000063229)	PALMD (ENSCCRG00000081527)	ENSCCRG00000041963	FRRS1 (ENSCCRG00000041965)	agla (ENSCCRG00000041986)	ENSCCRG00000063112	ENSCCRG00000042438
Goldfish	MODERN SPECIES	11	zgc:110269 (ENSCARG00000015801)	ATR (ENSCARG00000015831)	ENSCARG00000016221	ENSCARG00000016247	sh3glb1b (ENSCARG00000016750)	selenoj (ENSCARG00000016878)	vav3b (ENSCARG00000016903)	NTNG1 (ENSCARG00000017716)	ENSCARG00000017721	ENSCARG00000017737	col11a1b (ENSCARG00000017857)	OLFM3 (ENSCARG00000017873)	tecrl2b (ENSCARG00000017899)	ABCA4b (ENSCARG00000018056)	arhgap29b (ENSCARG00000018671)	abcd3b (ENSCARG00000019296) ##22	F3 (ENSCARG00000023123)	cnn3b (ENSCARG00000023129)	si:dkey-10f21.4 (ENSCARG00000023152)	ENSCARG00000023158	ptbp2b (ENSCARG00000023183)	ENSCARG00000023462	dpydb (ENSCARG00000023587)	plppr5a (ENSCARG00000026893)	PLPPR4 (ENSCARG00000026898)	PALMD (ENSCARG00000026906)	ENSCARG00000026933	agla (ENSCARG00000026974)	ENSCARG00000027360	OLFML2B (ENSCARG00000027442)	dusp12 (ENSCARG00000027463)
Cyprininae	ANCESTRAL SPECIES	660												ENSGT00940000154535.D.vb.b.a.a.b.a	ENSGT00940000156998.j.b.e	ENSGT00940000155624.a.b.a	ENSGT00950000183110.b.b.k.b.a	ENSGT00950000182955.a.a.a.h.b.b ##22	ENSGT00940000171175	ENSGT00950000182955.a.a.a.h.a ##22	ENSGT00390000012668.g.b.b	ENSGT00940000154539.a.a.e.b	ENSGT01010000222313.A.b.a.d.g.a.a	ENSGT00390000004175.b.a	ENSGT00390000000954	ENSGT01050000244924.a.b.h.a	ENSGT00500000044896.gb.a.a
Cyprininae_a	ANCESTRAL SPECIES	4	ENSGT00390000001015.c.b	ENSGT00940000155511.n.b.a	ENSGT00940000155807.b.b	ENSGT00940000155714.l	ENSGT00940000160622.ab.b.a	ENSGT00940000155667.b.b.a	ENSGT00400000023530.a.b	ENSGT00940000155252.fb.b.c	ENSGT00940000153601.a.b.d.c	ENSGT00940000163518.k.b.e	ENSGT00940000154535.D.vb.b.a.a.a	ENSGT00940000156998.j.b.e	ENSGT00950000182886.a.a.a.d.b	ENSGT00940000155624.a.b.a	ENSGT00950000183110.b.b.k.b.a	ENSGT00950000182955.a.a.a.h.b.b ##22	ENSGT00940000171175	ENSGT00950000182955.a.a.a.h.a ##22	ENSGT00390000012668.g.b.b	ENSGT00940000154539.a.a.e.b	ENSGT01010000222313.A.b.a.d.g.a.a	ENSGT00390000004175.b.a	ENSGT00390000000954	ENSGT01050000244924.a.b.h.a	ENSGT00500000044896.gb.a.a	ENSGT00940000158610.d.c	ENSGT00940000156181.B.f	ENSGT00940000157718.c.a	ENSGT00940000175356.g	ENSGT00940000157704.a.a.c	ENSGT00390000012596.e.a.b
Common carp reference	MODERN SPECIES	29	ENSCCRG00000035249	fbxo36b (ENSCCRG00000049396)	agfg1b (ENSCCRG00000072418)	zgc:110269 (ENSCCRG00000058726)	ENSCCRG00000009215	ENSCCRG00000009211	sh3glb1b (ENSCCRG00000058137)	selenoj (ENSCCRG00000008925)	vav3b (ENSCCRG00000060612)	ENSCCRG00000044010	ENSCCRG00000071788	col11a1b (ENSCCRG00000064686)	ENSCCRG00000029888	ABCA4 (ENSCCRG00000017424)	arhgap29b (ENSCCRG00000032261)	abcd3b (ENSCCRG00000032301) ##22	f3b (ENSCCRG00000034632)	cnn3b (ENSCCRG00000029062)	si:dkey-10f21.4 (ENSCCRG00000053379)	ENSCCRG00000017210	ptbp2b (ENSCCRG00000081309)	dpydb (ENSCCRG00000077534)	plppr5a (ENSCCRG00000059217)	PLPPR4 (ENSCCRG00000064666)	ENSCCRG00000061088	PALMD (ENSCCRG00000069713)	ENSCCRG00000016786	FRRS1 (ENSCCRG00000016779)	agla (ENSCCRG00000016392)	ENSCCRG00000016252	ENSCCRG00000016245
Zebrafish	MODERN SPECIES	11	zgc:110269 (ENSDARG00000012325)	ATR (ENSDARG00000079625)	ENSDARG00000095819	ENSDARG00000012914	sh3glb1b (ENSDARG00000010956)	selenoj (ENSDARG00000087277)	vav3b (ENSDARG00000075962)	NTNG1 (ENSDARG00000073713)	amy2a (ENSDARG00000013856)	ENSDARG00000099759	col11a1b (ENSDARG00000009014)	OLFM3 (ENSDARG00000039174)	tecrl2b (ENSDARG00000039979)	ABCA4 (ENSDARG00000062661)	arhgap29b (ENSDARG00000017748)	abcd3b (ENSDARG00000002947) ##22	f3b (ENSDARG00000005673)	cnn3b (ENSDARG00000029856)	si:dkey-10f21.4 (ENSDARG00000057743)	hccsa.1 (ENSDARG00000028131)	ENSDARG00000057769	HCCS (ENSDARG00000095776)	ENSDARG00000092949	ENSDARG00000115547	PDE4B (ENSDARG00000074233)	ENSDARG00000101215	dynlt5 (ENSDARG00000103545)	cpdp (ENSDARG00000099519)	ENSDARG00000109226	ZBTB41 (ENSDARG00000054984)	ebna1bp2 (ENSDARG00000054980)
Characiphysae	ANCESTRAL SPECIES	55	ENSGT00940000155511.n.b	ENSGT00940000155807.b	ENSGT00940000155714	ENSGT00530000063529.C	ENSGT00940000160622.ab.b	ENSGT00940000155667.b.b	ENSGT00400000023530.a	ENSGT00940000155252.fb.b	ENSGT00940000153601.a.b.d	ENSGT00940000154535.D.vb.b.b	ENSGT00940000156998.j.b	ENSGT00950000182886.a.a.a.d	ENSGT00940000155624.a.b	ENSGT00940000155624.b	ENSGT00950000183110.b.b.k.b	ENSGT00950000182955.a.a.a.h ##22	ENSGT00390000012668.g.b
Channel catfish	MODERN SPECIES	12								angptl4 (ENSIPUG00000016382)	ENSIPUG00000016376	ENSIPUG00000016351	ENSIPUG00000016339	ENSIPUG00000016322	itm2ca (ENSIPUG00000016315)	ENSIPUG00000016290	arhgap29b (ENSIPUG00000016244)	abcd3b (ENSIPUG00000016198) ##22	f3b (ENSIPUG00000016168)	actn4 (ENSIPUG00000016114)	gpr184 (ENSIPUG00000016047)	eif3k (ENSIPUG00000016055)	H33 (ENSIPUG00000016027)	ngef (ENSIPUG00000016000)	gpr55a (ENSIPUG00000015970)	ENSIPUG00000015954	ENSIPUG00000015724	tecrl2b (ENSIPUG00000015694)	ENSIPUG00000015663	sh3glb1b (ENSIPUG00000015636)	arhgef4 (ENSIPUG00000015529)	amer3 (ENSIPUG00000015518)	ATR (ENSIPUG00000015422)
Characiphysae_b	ANCESTRAL SPECIES	48	ENSGT00390000001015.c	ENSGT00940000155511.n.b	ENSGT00940000155807.b	ENSGT00940000155714	ENSGT00530000063529.C	ENSGT00940000160622.ab.b	ENSGT00940000155667.b.b	ENSGT00400000023530.a	ENSGT00940000155252.fb.b	ENSGT00940000153601.a.b.d	ENSGT00940000154535.D.vb.b.b	ENSGT00940000156998.j.b	ENSGT00950000182886.a.a.a.d	ENSGT00940000155624.a.b	ENSGT00950000183110.b.b.k.b	ENSGT00950000182955.a.a.a.h ##22	ENSGT00390000012668.g.b	ENSGT00940000165978	ENSGT00390000009409	ENSGT00390000000417.a.a.b.b	ENSGT01030000234571.b.b.a.a.a	ENSGT01040000240444.A.b.b
Characoidei	ANCESTRAL SPECIES	141	ENSGT00940000160511.a	ENSGT00990000204283	ENSGT00390000001015.c	ENSGT00940000155511.n.b	ENSGT00940000155807.b	ENSGT00940000155714	ENSGT00530000063529.C	ENSGT00940000160622.ab.b	ENSGT00940000155667.b.b	ENSGT00940000174945.b	ENSGT00940000153601.a.b.d	ENSGT00940000156998.j.b	ENSGT00950000182886.a.a.a.d	ENSGT00940000155624.a.b	ENSGT00950000183110.b.b.k.b	ENSGT00950000182955.a.a.a.h ##22	ENSGT00390000012668.g.b	ENSGT00940000165978	ENSGT00390000009409	ENSGT00390000000417.a.a.b.b	ENSGT01030000234571.b.b.a.a.a	ENSGT01040000240444.A.b.b
Red-bellied piranha	MODERN SPECIES	1864																ENSPNAG00000011590 ##22	ENSPNAG00000011599
Mexicana tetra	MODERN SPECIES	35	ENSAMXG00000038482	ENSAMXG00000005143	NTNG1 (ENSAMXG00000005175)	ENSAMXG00000039056	amy2a (ENSAMXG00000001942)	amy2a (ENSAMXG00000036692)	amy2a (ENSAMXG00000043444)	amy2a (ENSAMXG00000037877)	ENSAMXG00000019859	ENSAMXG00000044024	OLFM3 (ENSAMXG00000037826)	tecrl2b (ENSAMXG00000043760)	ABCA4 (ENSAMXG00000009875)	arhgap29b (ENSAMXG00000000706)	ENSAMXG00000035467	ENSAMXG00000042683 ##22	F3 (ENSAMXG00000000760)	actn4 (ENSAMXG00000000780)	zgc:85932 (ENSAMXG00000000825)	eif3k (ENSAMXG00000039638)	si:ch1073-429i10.3 (ENSAMXG00000041532)	ENSAMXG00000000828	NGEF (ENSAMXG00000043985)	gpr55a (ENSAMXG00000025367)
Electric eel	MODERN SPECIES	21	zgc:110269 (ENSEEEG00000015812)	ATR (ENSEEEG00000015815)	ENSEEEG00000015817	ENSEEEG00000015826	sh3glb1b (ENSEEEG00000015959)	selenoj (ENSEEEG00000016021)	ENSEEEG00000016024	ENSEEEG00000016027	NTNG1 (ENSEEEG00000016031)	amy2a (ENSEEEG00000016037)	col11a1b (ENSEEEG00000016063)	OLFM3 (ENSEEEG00000016078)	tecrl2b (ENSEEEG00000016080)	ABCA4 (ENSEEEG00000016111)	arhgap29b (ENSEEEG00000016291)	abcd3b (ENSEEEG00000016317) ##22	F3 (ENSEEEG00000017002)	actn4 (ENSEEEG00000017013)	zgc:85932 (ENSEEEG00000017482)	eif3k (ENSEEEG00000017493)	ENSEEEG00000017496	ENSEEEG00000017503	NGEF (ENSEEEG00000017507)	gpr55a (ENSEEEG00000017512)	itm2ca (ENSEEEG00000017514)	cab39 (ENSEEEG00000017516)	ENSEEEG00000017520	nr2f6a (ENSEEEG00000017521)	ENSEEEG00000017523	ENSEEEG00000017525	angptl4 (ENSEEEG00000017528)
Clupeiformes	ANCESTRAL SPECIES	626																ENSGT00950000182955.a.a.a.h ##22	ENSGT00390000012668.g.b	ENSGT01010000222313.A.b.a.d.g	ENSGT00390000004175.b
Atlantic herring	MODERN SPECIES	1	BPHL (ENSCHAG00000024409)	ENSCHAG00000024406	exoc2 (ENSCHAG00000024323)	foxq1b (ENSCHAG00000024317)	gmds (ENSCHAG00000024276)	MYLK4 (ENSCHAG00000024261)	serpinb1 (ENSCHAG00000024258)	ENSCHAG00000024241	ENSCHAG00000024233	dpydb (ENSCHAG00000023806)	ptbp2b (ENSCHAG00000023680)	RWDD3 (ENSCHAG00000023669)	arhgap29b (ENSCHAG00000023629)	ABCA4 (ENSCHAG00000016806)	tecrl2b (ENSCHAG00000016418)	abcd3b (ENSCHAG00000013563) ##22	ENSCHAG00000013484	si:dkey-10f21.4 (ENSCHAG00000013476)	hccsa.1 (ENSCHAG00000013469)	znf414 (ENSCHAG00000013437)	csnk1g2a (ENSCHAG00000012434)	mfsd12a (ENSCHAG00000012214)	SUCO (ENSCHAG00000010745)	tmed5 (ENSCHAG00000010706)	pigc (ENSCHAG00000010700)	ENSCHAG00000010645	prdx6 (ENSCHAG00000010533)	plpp6 (ENSCHAG00000010509)	ENSCHAG00000010427	ENSCHAG00000010388	ENSCHAG00000009601
Euteleosteomorpha	ANCESTRAL SPECIES	552																ENSGT00950000182955.a.a.a.h ##22	ENSGT00390000012668.g.b
Protacanthopterygii	ANCESTRAL SPECIES	189																ENSGT00950000182955.a.a.a.h ##22	ENSGT00390000012668.g.b	ENSGT00940000154539.a.a.d	ENSGT01010000222313.A.b.a.d.g	ENSGT00390000004175.b	ENSGT00390000000954	ENSGT01050000244924.a.b.h	ENSGT00940000158610.d	ENSGT00940000156181.B	ENSGT00940000157718.c	ENSGT00940000175356	ENSGT00940000157704.a.a	ENSGT00390000012596.e	ENSGT00940000164640	ENSGT00940000157757.g.b	ENSGT00940000173026
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	526	ENSGT00940000156304.c.b	ENSGT00940000159203.h	ENSGT00940000164519.c.a.a	ENSGT00940000155899.e.b	ENSGT00940000153141.B.a.l	ENSGT00950000183056.B.b.g.b	ENSGT00940000160216.a	ENSGT00950000183149.A.f.f	ENSGT00940000156731.q.b.b.a	ENSGT00940000156600.e.a	ENSGT00940000156200.A.c	ENSGT00940000153304.C	ENSGT00950000182915.b.b.a.a.bb.a	ENSGT00940000155751.b.b	ENSGT00440000037733.e.c	ENSGT00950000182955.a.a.a.h.c ##22	ENSGT00940000171175	ENSGT00940000154539.a.a.d.a	ENSGT01010000222313.A.b.a.d.g.c.b
Huchen	MODERN SPECIES	767						sdr16c5a (ENSHHUG00000022137)	SLC44A5 (ENSHHUG00000021806)	lhx8a (ENSHHUG00000021788)	ENSHHUG00000021753	ENSHHUG00000021723	ACOT11 (ENSHHUG00000021668)	mrpl37 (ENSHHUG00000021660)	ENSHHUG00000021578	ENSHHUG00000021561	sap130b (ENSHHUG00000021215)	abcd3b (ENSHHUG00000020762) ##22	f3b (ENSHHUG00000020740)	cnn3b (ENSHHUG00000020724)	si:dkey-10f21.4 (ENSHHUG00000020703)
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000159203.h	ENSGT00940000164519.c.a.a	ENSGT00940000155899.e.b	ENSGT00940000153141.B.a.l	ENSGT00950000183056.B.b.g.b	ENSGT00940000160216.a	ENSGT00950000183149.A.f.f	ENSGT00940000156731.q.b.b.a	ENSGT00940000156600.e.a	ENSGT00940000156200.A.c	ENSGT00940000153304.C	ENSGT00940000156460.A.a	ENSGT00950000182915.b.b.a.a.bb.a	ENSGT00940000155751.b.b	ENSGT00440000037733.e.c	ENSGT00950000182955.a.a.a.h.c ##22	ENSGT00940000171175	ENSGT00940000154539.a.a.d.a	ENSGT01010000222313.A.b.a.d.g.c.b	ENSGT01050000244924.a.b.h.c	ENSGT00500000044896.`b.a	ENSGT00940000158610.d.a	ENSGT00940000156181.B.h	ENSGT00940000157718.c.c	ENSGT00940000175356.f	ENSGT00940000157704.a.a	ENSGT00390000012596.e.c	ENSGT00940000164640	ENSGT00940000157757.g.b.b	ENSGT00940000159221.k.a	ENSGT00930000151041.g.b
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00940000155899.e.b	ENSGT00940000153141.B.a.l	ENSGT00950000183056.B.b.g.b	ENSGT00940000160216.a	ENSGT00950000183149.A.f.f	ENSGT00940000156731.q.b.b.a	ENSGT00940000156600.e.a	ENSGT00940000156200.A.c	ENSGT00940000153304.C	ENSGT00940000170376.b	ENSGT00940000154882.b	ENSGT00940000156460.A.a	ENSGT00950000182915.b.b.a.a.bb.a	ENSGT00940000155751.b.b	ENSGT00440000037733.e.c	ENSGT00950000182955.a.a.a.h.c ##22	ENSGT00940000171175	ENSGT00940000154539.a.a.d.a	ENSGT01010000222313.A.b.a.d.g.c.b	ENSGT01050000244924.a.b.h.c	ENSGT00500000044896.`b.a	ENSGT00940000158610.d.a	ENSGT00940000156181.B.h	ENSGT00940000157718.c.c	ENSGT00940000175356.f	ENSGT00940000157704.a.a	ENSGT00390000012596.e.c	ENSGT00940000164640	ENSGT00940000157757.g.b.b	ENSGT00940000159221.k.a	ENSGT01020000231030
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000024733	BPNT2 (ENSOMYG00000024713)	penka (ENSOMYG00000024686)	sdr16c5a (ENSOMYG00000024621)	ENSOMYG00000018256	SLC44A5 (ENSOMYG00000024180)	lhx8a (ENSOMYG00000023960)	ENSOMYG00000023946	cryz (ENSOMYG00000023936)	ENSOMYG00000038197	ENSOMYG00000023600	ENSOMYG00000023368	ENSOMYG00000023353	ENSOMYG00000069995	ENSOMYG00000021707	abcd3b (ENSOMYG00000017214) ##22	tf (ENSOMYG00000017022)	cnn3b (ENSOMYG00000016995)	si:dkey-10f21.4 (ENSOMYG00000016977)	ptbp2b (ENSOMYG00000016765)	ENSOMYG00000060911	ENSOMYG00000036319	dpydb (ENSOMYG00000016649)	plppr5a (ENSOMYG00000016640)	PLPPR4 (ENSOMYG00000016632)	PALMD (ENSOMYG00000016620)	ENSOMYG00000016613	FRRS1 (ENSOMYG00000016519)	ENSOMYG00000057363	agla (ENSOMYG00000009196)	ENSOMYG00000006549
Oncorhynchus_a	ANCESTRAL SPECIES	37	ENSGT00940000159203.h	ENSGT00940000164519.c.a.a	ENSGT00940000155899.e.b	ENSGT00940000153141.B.a.l	ENSGT00950000183056.B.b.g.b	ENSGT00940000160216.a	ENSGT00950000183149.A.f.f	ENSGT00940000156731.q.b.b.a	ENSGT00940000156600.e.a	ENSGT00940000156200.A.c	ENSGT00940000153304.C	ENSGT00940000156460.A.a	ENSGT00950000182915.b.b.a.a.bb.a	ENSGT00940000155751.b.b	ENSGT00440000037733.e.c	ENSGT00950000182955.a.a.a.h.c ##22	ENSGT00940000171175	ENSGT00940000154539.a.a.d.a	ENSGT01010000222313.A.b.a.d.g.c.b	ENSGT01050000244924.a.b.h.c	ENSGT00500000044896.`b.a	ENSGT00940000158610.d.a	ENSGT00940000156181.B.h	ENSGT00940000157718.c.c	ENSGT00940000175356.f	ENSGT00940000157704.a.a	ENSGT00390000012596.e.c	ENSGT00940000164640	ENSGT00940000157757.g.b.b	ENSGT00940000159221.k.a	ENSGT01020000231030
Chinook salmon	MODERN SPECIES	1	cyp7a1 (ENSOTSG00005030254)	FAM110B (ENSOTSG00005030251)	BPNT2 (ENSOTSG00005030249)	penka (ENSOTSG00005030239)	sdr16c5a (ENSOTSG00005030238)	ENSOTSG00005030237	ENSOTSG00005030183	lhx8a (ENSOTSG00005030178)	ENSOTSG00005030177	ENSOTSG00005030176	ENSOTSG00005030175	ACOT11 (ENSOTSG00005028829)	CALR (ENSOTSG00005028814)	ENSOTSG00005028813	sap130b (ENSOTSG00005025129)	abcd3b (ENSOTSG00005024708) ##22	f3b (ENSOTSG00005024707)	cnn3b (ENSOTSG00005024706)	si:dkey-10f21.4 (ENSOTSG00005024704)	ptbp2b (ENSOTSG00005024386)	dpydb (ENSOTSG00005024270)	plppr5a (ENSOTSG00005024246)	PLPPR4 (ENSOTSG00005024243)	PALMD (ENSOTSG00005024240)	ENSOTSG00005024237	FRRS1 (ENSOTSG00005024234)	agla (ENSOTSG00005024032)	ENSOTSG00005035744	ENSOTSG00005035742	OLFML2B (ENSOTSG00005035741)	ENSOTSG00005035740
Coho salmon	MODERN SPECIES	23	CYP7A1 (ENSOKIG00005031429)	FAM110B (ENSOKIG00005031419)	BPNT2 (ENSOKIG00005031411)	penka (ENSOKIG00005031406)	sdr16c5a (ENSOKIG00005031315)	sdr16c5a (ENSOKIG00005031302)	ENSOKIG00005031283	SLC44A5 (ENSOKIG00005030976)	lhx8a (ENSOKIG00005030935)	tyw3 (ENSOKIG00005030903)	ENSOKIG00005030891	ACOT11 (ENSOKIG00005029361)	ENSOKIG00005029246	ENSOKIG00005029224	sap130b (ENSOKIG00005026356)	abcd3b (ENSOKIG00005025761) ##22	f3b (ENSOKIG00005025709)	cnn3b (ENSOKIG00005025670)	si:dkey-10f21.4 (ENSOKIG00005025639)	ENSOKIG00005025614	ptbp2b (ENSOKIG00005024844)	ENSOKIG00005024809	ENSOKIG00005024804	dpydb (ENSOKIG00005023519)	plppr5a (ENSOKIG00005023448)	PLPPR4 (ENSOKIG00005023440)	PALMD (ENSOKIG00005023435)	ENSOKIG00005023420	FRRS1 (ENSOKIG00005023359)	agla (ENSOKIG00005039381)	ENSOKIG00005039204
Salmo	ANCESTRAL SPECIES	35	ENSGT00940000164519.c.a.a	ENSGT00940000155899.e.b	ENSGT00940000153141.B.a.l	ENSGT00950000183056.B.b.g.b	ENSGT00940000160216.a	ENSGT00950000183149.A.f.f	ENSGT00940000156731.q.b.b.a	ENSGT00940000156600.e.a	ENSGT00940000156200.A.c	ENSGT00940000170376.b	ENSGT00940000154882.b	ENSGT00940000156460.A.a	ENSGT00950000182915.b.b.a.a.bb.a	ENSGT00940000155751.b.b	ENSGT00440000037733.e.c	ENSGT00950000182955.a.a.a.h.c ##22	ENSGT00940000171175	ENSGT00940000154539.a.a.d.a	ENSGT01010000222313.A.b.a.d.g.c.b	ENSGT01050000244924.a.b.h.c	ENSGT00500000044896.`b.a	ENSGT00940000158610.d.a	ENSGT00940000156181.B.h	ENSGT00940000157718.c.c	ENSGT00940000175356.f	ENSGT00940000157704.a.a	ENSGT00390000012596.e.c	ENSGT00940000164640	ENSGT00940000157757.g.b.b	ENSGT00940000159221.k.a	ENSGT00930000151041.g.b
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000074103	ENSSSAG00000073257	ENSSSAG00000073200	ENSSSAG00000120023	BPNT2 (ENSSSAG00000101217)	penka (ENSSSAG00000101555)	sdr16c5a (ENSSSAG00000073183)	SLC44A5 (ENSSSAG00000071065)	lhx8a (ENSSSAG00000073174)	ENSSSAG00000070937	cryz (ENSSSAG00000088084)	acot11a (ENSSSAG00000070400)	ENSSSAG00000070336	ENSSSAG00000070333	ENSSSAG00000067678	abcd3b (ENSSSAG00000057454) ##22	f3b (ENSSSAG00000084652)	ENSSSAG00000090021	cnn3 (ENSSSAG00000057230)	si:dkey-10f21.4 (ENSSSAG00000084055)	ptbp2b (ENSSSAG00000056037)	ENSSSAG00000096151	dpydb (ENSSSAG00000055729)	plppr5a (ENSSSAG00000055672)	PLPPR4 (ENSSSAG00000101356)	PALMD (ENSSSAG00000119372)	ENSSSAG00000055609	FRRS1 (ENSSSAG00000055540)	agla (ENSSSAG00000045102)	ENSSSAG00000044641	OLFML2B (ENSSSAG00000044607)
River trout	MODERN SPECIES	13	ENSSTUG00000041344	cyp7a1 (ENSSTUG00000041243)	FAM110B (ENSSTUG00000041227)	BPNT2 (ENSSTUG00000041203)	penka (ENSSTUG00000041177)	sdr16c5a (ENSSTUG00000041153)	SLC44A5 (ENSSTUG00000039347)	lhx8a (ENSSTUG00000039289)	ENSSTUG00000039282	cryz (ENSSTUG00000039263)	ENSSTUG00000039257	ACOT11 (ENSSTUG00000038782)	CALR (ENSSTUG00000038607)	ENSSTUG00000038589	sap130b (ENSSTUG00000038081)	abcd3b (ENSSTUG00000032729) ##22	f3b (ENSSTUG00000032609)	cnn3b (ENSSTUG00000032550)	si:dkey-10f21.4 (ENSSTUG00000032536)	ENSSTUG00000032517	ptbp2b (ENSSTUG00000031967)	dpydb (ENSSTUG00000029381)	plppr5a (ENSSTUG00000029308)	PLPPR4 (ENSSTUG00000029300)	PALMD (ENSSTUG00000029283)	ENSSTUG00000029275	FRRS1 (ENSSTUG00000029229)	agla (ENSSTUG00000028240)	ENSSTUG00000028070	OLFML2B (ENSSTUG00000028057)	ENSSTUG00000028039
Salmoninae	ANCESTRAL SPECIES	131	ENSGT00940000156731.q.b.a	ENSGT00940000156600.e.b	ENSGT00940000156200.A.d	ENSGT00940000170376	ENSGT00940000154882.b	ENSGT00940000164586.h	ENSGT00940000154882.a	ENSGT00940000161095	ENSGT00530000063681.b.b	ENSGT00940000156460.A.b	ENSGT00390000000867	ENSGT00940000163467.a.b.b.a.b.e.a	ENSGT00950000182915.b.b.a.a.bb.b	ENSGT00940000155751.b.a	ENSGT00440000037733.e.d	ENSGT00950000182955.a.a.a.h.d ##22	ENSGT00390000012668.g.b	ENSGT00940000154539.a.a.d.b	ENSGT01010000222313.A.b.a.d.g.c.a	ENSGT00390000004175.b	ENSGT00390000000954	ENSGT01050000244924.a.b.h.d	ENSGT00500000044896.`b.b	ENSGT00940000158610.d.b	ENSGT00940000156181.B.g	ENSGT00940000157718.c.d	ENSGT00940000175356.e	ENSGT00390000012596.e.d	ENSGT00940000157757.g.b.a	ENSGT00940000173026	ENSGT00940000159221.k.b
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00940000160216.b	ENSGT00950000183149.A.f.e	ENSGT00940000156731.q.b.a	ENSGT00940000156600.e.b	ENSGT00940000156200.A.d	ENSGT00940000170376.a	ENSGT00940000154882.a	ENSGT00940000161095	ENSGT00530000063681.b.b	ENSGT00940000156460.A.b	ENSGT00390000000867	ENSGT00940000163467.a.b.b.a.b.e.a	ENSGT00950000182915.b.b.a.a.bb.b	ENSGT00940000155751.b.a	ENSGT00440000037733.e.d	ENSGT00950000182955.a.a.a.h.d ##22	ENSGT00390000012668.g.b	ENSGT00940000154539.a.a.d.b	ENSGT01010000222313.A.b.a.d.g.c.a	ENSGT00390000004175.b	ENSGT00390000000954	ENSGT01050000244924.a.b.h.d	ENSGT00500000044896.`b.b	ENSGT00940000158610.d.b	ENSGT00940000156181.B.g	ENSGT00940000157718.c.d	ENSGT00940000175356.e	ENSGT00390000012596.e.d	ENSGT00940000157757.g.b.a	ENSGT00940000159221.k.b	ENSGT00930000151041.g.a
Salmo	ANCESTRAL SPECIES	5	ENSGT00950000183056.B.b.g.a	ENSGT00940000160216.b	ENSGT00940000182346	ENSGT00940000156731.q.b.a	ENSGT00940000156600.e.b	ENSGT00940000156200.A.d	ENSGT00940000154882.a	ENSGT00940000161095	ENSGT00530000063681.b.b	ENSGT00940000156460.A.b	ENSGT00390000000867	ENSGT00940000163467.a.b.b.a.b.e.a	ENSGT00950000182915.b.b.a.a.bb.b	ENSGT00940000155751.b.a	ENSGT00440000037733.e.d	ENSGT00950000182955.a.a.a.h.d ##22	ENSGT00390000012668.g.b	ENSGT00940000154539.a.a.d.b	ENSGT01010000222313.A.b.a.d.g.c.a	ENSGT00390000004175.b	ENSGT00390000000954	ENSGT01050000244924.a.b.h.d	ENSGT00500000044896.`b.b	ENSGT00940000169422	ENSGT00940000158610.d.b	ENSGT00940000156181.B.g	ENSGT00940000157718.c.d	ENSGT00940000175356.e	ENSGT00390000012596.e.d	ENSGT00940000157757.g.b.a	ENSGT00940000159221.k.b
River trout	MODERN SPECIES	24	BPNT2 (ENSSTUG00000047058)	ENSSTUG00000047077	sdr16c5a (ENSSTUG00000047088)	SLC44A5 (ENSSTUG00000047109)	ENSSTUG00000047192	lhx8a (ENSSTUG00000047196)	cryz (ENSSTUG00000047207)	ENSSTUG00000047219	fam151a (ENSSTUG00000047223)	acot11a (ENSSTUG00000047246)	mrpl37 (ENSSTUG00000047542)	ENSSTUG00000047549	CALR (ENSSTUG00000047565)	ENSSTUG00000047601	sap130b (ENSSTUG00000047634)	abcd3b (ENSSTUG00000048641) ##22	F3 (ENSSTUG00000049389)	cnn3b (ENSSTUG00000049393)	si:dkey-10f21.4 (ENSSTUG00000049397)	hccsa.1 (ENSSTUG00000049403)	RWDD3 (ENSSTUG00000049408)	ptbp2b (ENSSTUG00000049415)	ENSSTUG00000049459	ENSSTUG00000049460	plppr5a (ENSSTUG00000036633)	PLPPR4 (ENSSTUG00000036643)	PALMD (ENSSTUG00000036664)	ENSSTUG00000036672	agla (ENSSTUG00000036708)	OLFML2B (ENSSTUG00000037573)	ENSSTUG00000037585
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000051395	ENSSSAG00000051384	sdr16c5a (ENSSSAG00000051369)	SLC44A5 (ENSSSAG00000048493)	lhx8a (ENSSSAG00000048374)	cryz (ENSSSAG00000048348)	ENSSSAG00000102517	ENSSSAG00000115536	fam151a (ENSSSAG00000104196)	ACOT11 (ENSSSAG00000047944)	mrpl37 (ENSSSAG00000047920)	ENSSSAG00000047917	ENSSSAG00000047126	ENSSSAG00000047097	ENSSSAG00000043313	abcd3b (ENSSSAG00000017253) ##22	F3 (ENSSSAG00000015951)	cnn3b (ENSSSAG00000015909)	tm56b (ENSSSAG00000015876)	hccsa.1 (ENSSSAG00000015859)	RWDD3 (ENSSSAG00000086442)	ptbp2b (ENSSSAG00000012516)	dpydb (ENSSSAG00000011632)	ENSSSAG00000104800	plppr5a (ENSSSAG00000011526)	PLPPR4 (ENSSSAG00000093931)	PALMD (ENSSSAG00000011369)	ENSSSAG00000011202	ENSSSAG00000093973	agla (ENSSSAG00000008141)	OLFML2B (ENSSSAG00000008042)
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT00950000183149.A.f.e	ENSGT00940000156731.q.b.a	ENSGT00940000156600.e.b	ENSGT00940000156200.A.d	ENSGT00940000170376.a	ENSGT00940000154882.a	ENSGT00940000161095	ENSGT00530000063681.b.b	ENSGT00940000156460.A.b	ENSGT00390000000867	ENSGT00940000163467.a.b.b.a.b.e.a	ENSGT00950000182915.b.b.a.a.bb.b	ENSGT01030000234965.d.b	ENSGT00940000155751.b.a	ENSGT00440000037733.e.d	ENSGT00950000182955.a.a.a.h.d ##22	ENSGT00390000012668.g.b	ENSGT00940000154539.a.a.d.b	ENSGT01010000222313.A.b.a.d.g.c.a	ENSGT00390000004175.b	ENSGT00390000000954	ENSGT01050000244924.a.b.h.d	ENSGT00940000158610.d.b	ENSGT00940000156181.B.g	ENSGT00940000157718.c.d	ENSGT00940000175356.e	ENSGT00390000012596.e.d	ENSGT00940000157757.g.b.a	ENSGT00940000159221.k.b	ENSGT00930000151041.g.a	ENSGT00940000166019.m.b
Rainbow trout	MODERN SPECIES	20	ENSOMYG00000047814	ENSOMYG00000037603	ENSOMYG00000077583	ENSOMYG00000037626	penka (ENSOMYG00000037632)	sdr16c5a (ENSOMYG00000037663)	SLC44A5 (ENSOMYG00000037940)	lhx8a (ENSOMYG00000038175)	cryz (ENSOMYG00000038188)	fam151a (ENSOMYG00000038204)	acot11a (ENSOMYG00000038467)	mrpl37 (ENSOMYG00000039653)	ENSOMYG00000039662	ENSOMYG00000039716	ENSOMYG00000039947	abcd3b (ENSOMYG00000041289) ##22	F3 (ENSOMYG00000043189)	cnn3b (ENSOMYG00000071417)	ENSOMYG00000050691	si:dkey-10f21.4 (ENSOMYG00000043203)	hccsa.1 (ENSOMYG00000043209)	RWDD3 (ENSOMYG00000043212)	ptbp2b (ENSOMYG00000043227)	ENSOMYG00000061893	plppr5a (ENSOMYG00000043252)	PLPPR4 (ENSOMYG00000043257)	PALMD (ENSOMYG00000043269)	ENSOMYG00000043285	agla (ENSOMYG00000043694)	OLFML2B (ENSOMYG00000045136)	ENSOMYG00000045141
Oncorhynchus_a	ANCESTRAL SPECIES	22	ENSGT00940000160216.b	ENSGT00950000183149.A.f.e	ENSGT00940000156731.q.b.a	ENSGT00940000156600.e.b	ENSGT00940000156200.A.d	ENSGT00940000170376.a	ENSGT00940000154882.a	ENSGT00940000161095	ENSGT00530000063681.b.b	ENSGT00940000156460.A.b	ENSGT00390000000867	ENSGT00940000163467.a.b.b.a.b.e.a	ENSGT01030000234965.d.b	ENSGT00940000155751.b.a	ENSGT00440000037733.e.d	ENSGT00950000182955.a.a.a.h.d ##22	ENSGT00390000012668.g.b	ENSGT00940000154539.a.a.d.b	ENSGT01010000222313.A.b.a.d.g.c.a	ENSGT00390000004175.b	ENSGT00390000000954	ENSGT01050000244924.a.b.h.d	ENSGT00940000158610.d.b	ENSGT00940000156181.B.g	ENSGT00940000157718.c.d	ENSGT00940000175356.e	ENSGT00390000012596.e.d	ENSGT00940000157757.g.b.a	ENSGT00940000159221.k.b	ENSGT00930000151041.g.a	ENSGT00940000166019.m.b
Coho salmon	MODERN SPECIES	19	FAM110B (ENSOKIG00005048548)	ENSOKIG00005048551	penka (ENSOKIG00005048555)	sdr16c5a (ENSOKIG00005048562)	SLC44A5 (ENSOKIG00005048579)	lhx8a (ENSOKIG00005048611)	cryz (ENSOKIG00005048619)	ENSOKIG00005048624	fam151a (ENSOKIG00005048628)	acot11a (ENSOKIG00005048642)	mrpl37 (ENSOKIG00005048657)	ENSOKIG00005048669	ENSOKIG00005048698	ENSOKIG00005048713	SAP130 (ENSOKIG00005048775)	abcd3b (ENSOKIG00005049186) ##22	F3 (ENSOKIG00005049298)	cnn3b (ENSOKIG00005049304)	si:dkey-10f21.4 (ENSOKIG00005049312)	hccsa.1 (ENSOKIG00005049315)	RWDD3 (ENSOKIG00005049325)	ptbp2b (ENSOKIG00005049343)	plppr5a (ENSOKIG00005049438)	PLPPR4 (ENSOKIG00005049452)	PALMD (ENSOKIG00005049472)	ENSOKIG00005049483	agla (ENSOKIG00005049622)	OLFML2B (ENSOKIG00005049969)	ENSOKIG00005049977	dusp12 (ENSOKIG00005049983)	ENSOKIG00005050015
Chinook salmon	MODERN SPECIES	20	FAM110B (ENSOTSG00005003951)	ENSOTSG00005003953	penka (ENSOTSG00005003955)	SLC44A5 (ENSOTSG00005003993)	lhx8a (ENSOTSG00005006463)	ENSOTSG00005006464	cryz (ENSOTSG00005006465)	ENSOTSG00005006467	fam151a (ENSOTSG00005006468)	acot11a (ENSOTSG00005006470)	mrpl37 (ENSOTSG00005007393)	ENSOTSG00005007395	ENSOTSG00005007400	ENSOTSG00005007408	sap130b (ENSOTSG00005007409)	abcd3b (ENSOTSG00005008374) ##22	F3 (ENSOTSG00005013617)	cnn3b (ENSOTSG00005013618)	si:dkey-10f21.4 (ENSOTSG00005013621)	hccsa.1 (ENSOTSG00005013622)	RWDD3 (ENSOTSG00005013623)	ptbp2b (ENSOTSG00005013626)	plppr5a (ENSOTSG00005013669)	PLPPR4 (ENSOTSG00005013671)	PALMD (ENSOTSG00005013674)	ENSOTSG00005013677	agla (ENSOTSG00005013697)	OLFML2B (ENSOTSG00005020073)	ENSOTSG00005020076	dusp12 (ENSOTSG00005020082)	ENSOTSG00005020086
Huchen	MODERN SPECIES	626	FAM110B (ENSHHUG00000029720)	BPNT2 (ENSHHUG00000029716)	penka (ENSHHUG00000029703)	sdr16c5a (ENSHHUG00000029691)	SLC44A5 (ENSHHUG00000029568)	lhx8a (ENSHHUG00000029555)	cryz (ENSHHUG00000029546)	ENSHHUG00000029537	fam151a (ENSHHUG00000029530)	acot11a (ENSHHUG00000029476)	mrpl37 (ENSHHUG00000029464)	ENSHHUG00000029450	CALR (ENSHHUG00000044062)	ENSHHUG00000044059	sap130b (ENSHHUG00000044008)	abcd3b (ENSHHUG00000043865) ##22	F3 (ENSHHUG00000043858)	cnn3b (ENSHHUG00000043854)	si:dkey-10f21.4 (ENSHHUG00000043843)	hccsa.1 (ENSHHUG00000043840)	RWDD3 (ENSHHUG00000043834)	nr3c2 (ENSHHUG00000043824)	ENSHHUG00000043822
Osteoglossiformes	ANCESTRAL SPECIES	51	ENSGT00940000155714	ENSGT00530000063529.C	ENSGT00940000160622.bb.a	ENSGT00390000005140.b.b.k	ENSGT00940000157975.fb.b	ENSGT00940000155667.b.b	ENSGT00400000023530	ENSGT00940000155252.fb.b	ENSGT00940000153601.a.b.d	ENSGT00940000154802	ENSGT00940000154535.D.vb.b	ENSGT00940000156998.g	ENSGT00950000182886.a.a.a.d	ENSGT00940000155624.a.b	ENSGT00950000183110.b.b.k.b	ENSGT00950000182955.a.a.a.h ##22	ENSGT00390000012668.i.b	ENSGT00940000154539.a.a.h	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b.h	ENSGT00940000158610.d	ENSGT00940000156181.B.m	ENSGT00940000157718.c	ENSGT00940000175356	ENSGT00940000157704.a.a	ENSGT00390000012596	ENSGT00940000164640	ENSGT00390000012166.d	ENSGT00940000157757.g.a.a	ENSGT00940000159221.e
Asian bonytongue	MODERN SPECIES	18	ENSSFOG00015008414	ENSSFOG00015008388	fam168b (ENSSFOG00015030729)	NRROS (ENSSFOG00015008339)	sh3glb1b (ENSSFOG00015008292)	selenoj (ENSSFOG00015008263)	vav3b (ENSSFOG00015008158)	NTNG1 (ENSSFOG00015008117)	AMY1C (ENSSFOG00015008070)	ENSSFOG00015007966	OLFM3 (ENSSFOG00015026147)	ENSSFOG00015007933	tecrl2b (ENSSFOG00015007817)	ABCA4 (ENSSFOG00015007687)	arhgap29b (ENSSFOG00015007651)	abcd3b (ENSSFOG00015007602) ##22	F3 (ENSSFOG00015007558)	CNN3 (ENSSFOG00015007536)	TLCD4 (ENSSFOG00015027351)	hccsb (ENSSFOG00015007493)	RWDD3 (ENSSFOG00015007458)	ptbp2b (ENSSFOG00015007373)	plppr5a (ENSSFOG00015007359)	PLPPR4 (ENSSFOG00015007321)	ENSSFOG00015032483	ENSSFOG00015007292	FRRS1 (ENSSFOG00015007270)	ENSSFOG00015007197	ENSSFOG00015007266	ENSSFOG00015007182	ENSSFOG00015007096
P. kingsleyae	MODERN SPECIES	351														ABCA4 (ENSPKIG00000015224)	ARHGAP29 (ENSPKIG00000015167)	abcd3b (ENSPKIG00000015100) ##22	F3 (ENSPKIG00000015079)	CNN3 (ENSPKIG00000015059)	TLCD4 (ENSPKIG00000015041)	hccsb (ENSPKIG00000015011)	RWDD3 (ENSPKIG00000014985)	ptbp2b (ENSPKIG00000014933)	plppr5a (ENSPKIG00000014910)	PLPPR4 (ENSPKIG00000014875)	PALMD (ENSPKIG00000014794)	ENSPKIG00000014750	FRRS1 (ENSPKIG00000014717)	agla (ENSPKIG00000014487)
Spotted gar	MODERN SPECIES	648	fam102bb (ENSLOCG00000007897)	slc25a24 (ENSLOCG00000007910)	selenoj (ENSLOCG00000007922)	vav3b (ENSLOCG00000007934)	NTNG1 (ENSLOCG00000007954)	prmt6 (ENSLOCG00000017743)	AMY1C (ENSLOCG00000007972)	rnpc3 (ENSLOCG00000007986)	col11a1a (ENSLOCG00000008000)	olfm3a (ENSLOCG00000008015)	tecrl2b (ENSLOCG00000008031)	ENSLOCG00000008047	ENSLOCG00000008060	ENSLOCG00000008070	ENSLOCG00000008082	abcd3a (ENSLOCG00000008096) ##22	acp5b (ENSLOCG00000008124)	f3a (ENSLOCG00000008142)	cnn3a (ENSLOCG00000008165)	alg14 (ENSLOCG00000008176)	TLCD4 (ENSLOCG00000008185)	hccsb (ENSLOCG00000008198)	RWDD3 (ENSLOCG00000008213)	ptbp2a (ENSLOCG00000008224)	dpydb (ENSLOCG00000008253)	snx7 (ENSLOCG00000008275)	plppr5a (ENSLOCG00000008289)	PLPPR4 (ENSLOCG00000008301)	ENSLOCG00000008312	DNASE2B (ENSLOCG00000008324)	uox (ENSLOCG00000008337)
Reedfish	MODERN SPECIES	1	slc25a24 (ENSECRG00000012985)	selenoj (ENSECRG00000013019)	ENSECRG00000013077	ENSECRG00000013119	NTNG1 (ENSECRG00000013156)	ENSECRG00000013181	prmt6 (ENSECRG00000013189)	ENSECRG00000013199	AMY1C (ENSECRG00000013223)	rnpc3 (ENSECRG00000013249)	col11a1a (ENSECRG00000013358)	olfm3a (ENSECRG00000013604)	tecrl2b (ENSECRG00000013611)	abca4a (ENSECRG00000013674)	arhgap29b (ENSECRG00000013844)	abcd3a (ENSECRG00000013900) ##22	F3 (ENSECRG00000014029)	SLC44A3 (ENSECRG00000014073)	cnn3a (ENSECRG00000014167)	alg14 (ENSECRG00000014219)	TLCD4 (ENSECRG00000014248)	hccsb (ENSECRG00000014288)	RWDD3 (ENSECRG00000014326)	ENSECRG00000014341	ptbp2a (ENSECRG00000014378)	dpydb (ENSECRG00000014663)	snx7 (ENSECRG00000016669)	plppr5a (ENSECRG00000016708)	PLPPR4 (ENSECRG00000016754)	PALMD (ENSECRG00000016772)	ENSECRG00000016790
Elephant shark	MODERN SPECIES	1492	EVI5 (ENSCMIG00000007802)	ENSCMIG00000007794	dipk1aa (ENSCMIG00000007787)	mtf2 (ENSCMIG00000007771)	CCDC18 (ENSCMIG00000007754)	scinla (ENSCMIG00000007638)	zgc:109982 (ENSCMIG00000007593)	dr1 (ENSCMIG00000007589)	fnbp1l (ENSCMIG00000007582)	bcar3 (ENSCMIG00000007556)	ENSCMIG00000007545	gclm (ENSCMIG00000007539)	ENSCMIG00000007512	abca4a (ENSCMIG00000006637)	arhgap29b (ENSCMIG00000006177)	abcd3a (ENSCMIG00000005854) ##22	acp5b (ENSCMIG00000005659)	ENSCMIG00000005641	SLC44A3 (ENSCMIG00000005618)	CNN3 (ENSCMIG00000005595)	alg14 (ENSCMIG00000005584)	si:dkey-10f21.4 (ENSCMIG00000005577)	hccsb (ENSCMIG00000005567)	RWDD3 (ENSCMIG00000005561)	ptbp2a (ENSCMIG00000005303)	dpydb (ENSCMIG00000004966)	snx7 (ENSCMIG00000004874)	plppr5a (ENSCMIG00000004864)	PLPPR4 (ENSCMIG00000004851)	PALMD (ENSCMIG00000004846)	ENSCMIG00000004840
Cyclostomata	ANCESTRAL SPECIES	1271															ENSGT00390000012668	ENSGT00950000182955.a.a.a ##22
Hagfish	MODERN SPECIES	729				ENSEBUG00000003344	ENSEBUG00000003023	ENSEBUG00000002000	ENSEBUG00000001017	ENSEBUG00000003880	dhps (ENSEBUG00000011320)	ENSEBUG00000015894	ENSEBUG00000007162	ENSEBUG00000001298	ENSEBUG00000013006	cactin (ENSEBUG00000013931)	ENSEBUG00000004311	abcd3a (ENSEBUG00000002093) ##22	ndufb7 (ENSEBUG00000004190)	ENSEBUG00000013090	ENSEBUG00000010389	ENSEBUG00000017037	ENSEBUG00000003952	YJU2B (ENSEBUG00000014191)	ENSEBUG00000002558	AGL (ENSEBUG00000008315)	ENSEBUG00000010328	ENSEBUG00000009750	ENSEBUG00000006917
Ciona	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.a ##22
Ciona intestinalis	MODERN SPECIES	361														ENSCING00000000199	ENSCING00000016897	ENSCING00000000204 ##22	nfrkb (ENSCING00000016904)
Bilateria	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.b ##22
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.b ##22
Caenorhabditis elegans	DUPLICATION
Caenorhabditis elegans	MODERN SPECIES	5	C53A5.11 (WBGene00008269)	gar-3 (WBGene00001519)	Y40H4A.2 (WBGene00012741)	pes-9 (WBGene00003982)	R11H6.2 (WBGene00011250)	glb-22 (WBGene00011251)	R11H6.4 (WBGene00011252)	R11H6.5 (WBGene00011253)	ccnk-1 (WBGene00009650)	hot-1 (WBGene00001986)	F43D2.6 (WBGene00044191)	F43D2.3 (WBGene00009652)	F43D2.7 (WBGene00045516)	C54G10.1 (WBGene00008319)	rfc-1 (WBGene00004337)	pmp-3 (WBGene00004060) ##22	slc-25A29 (WBGene00008320)	srh-17 (WBGene00005242)	C47E8.9 (WBGene00008146)	C47E8.1 (WBGene00008141)	C47E8.3 (WBGene00008142)	C47E8.4 (WBGene00008143)	hsp-90 (WBGene00000915)	C47E8.11 (WBGene00044180)	gasr-8 (WBGene00008144)	unc-112 (WBGene00006836)	set-5 (WBGene00008145)	R08A2.9 (WBGene00219318)	ssp-33 (WBGene00011134)	R08A2.5 (WBGene00011136)	R08A2.2 (WBGene00011133)
Caenorhabditis elegans	MODERN SPECIES	5	ZC487.2 (WBGene00022624)	srg-30 (WBGene00005187)	sna-1 (WBGene00020951)	dlst-1 (WBGene00020950)	W02F12.4 (WBGene00020949)	era-1 (WBGene00020948)	W02F12.2 (WBGene00020947)	W02F12.8 (WBGene00175027)	mtl-1 (WBGene00003473)	K11G9.5 (WBGene00019655)	egl-46 (WBGene00001210)	cest-34 (WBGene00019652)	cest-31 (WBGene00019653)	cest-28 (WBGene00019654)	str-180 (WBGene00006224)	pmp-5 (WBGene00004062) ##22	snb-1 (WBGene00004897)	syx-18 (WBGene00020425)	T10H9.8 (WBGene00044779)	T10H9.1 (WBGene00020424)	scd-2 (WBGene00004740)	ppt-1 (WBGene00004092)	nhr-37 (WBGene00018412)	cpr-4 (WBGene00000784)	gon-14 (WBGene00002148)	ZK1055.7 (WBGene00022848)	ZK1055.6 (WBGene00022847)	hcp-1 (WBGene00001829)	ZK1055.2 (WBGene00022843)	ZK1055.4 (WBGene00022845)	EGAP9.3 (WBGene00017151)
Chordata	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.b ##22
Ciona	ANCESTRAL SPECIES	630														ENSGT00550000075100	ENSGT00940000153348.C	ENSGT00950000182955.a.a.b ##22
Ciona intestinalis	MODERN SPECIES	1	ENSCING00000020019	ENSCING00000005587	ENSCING00000005576	ENSCING00000005564	ENSCING00000019650	ENSCING00000004741	ENSCING00000013977	ENSCING00000024916	ENSCING00000013978	ENSCING00000024114	ENSCING00000023320	ENSCING00000004788	ENSCING00000004789	ENSCING00000024852	ENSCING00000005595	ENSCING00000005591 ##22	ENSCING00000024360	ENSCING00000025057	ENSCING00000019822	ENSCING00000004739	ENSCING00000020347	ENSCING00000019039	ENSCING00000013975	ENSCING00000023255	ENSCING00000021809	ENSCING00000021309	ENSCING00000020427	ENSCING00000019118	ENSCING00000024523	ENSCING00000024238	ENSCING00000004710
Ciona savignyi	MODERN SPECIES	1	ENSCSAVG00000008834	ENSCSAVG00000008839	ENSCSAVG00000008846	ENSCSAVG00000008847	ENSCSAVG00000008851	ENSCSAVG00000008887	ENSCSAVG00000008889	ENSCSAVG00000008892	ENSCSAVG00000008898	ENSCSAVG00000008901	ENSCSAVG00000008908	ENSCSAVG00000008910	ENSCSAVG00000008916	ENSCSAVG00000009006	ENSCSAVG00000009009	ENSCSAVG00000009010 ##22	ENSCSAVG00000009055	ENSCSAVG00000009082	ENSCSAVG00000009089	ENSCSAVG00000009114	ENSCSAVG00000009117	ENSCSAVG00000009120	ENSCSAVG00000009130	ENSCSAVG00000009138	ENSCSAVG00000009141	ENSCSAVG00000009147	ENSCSAVG00000009151	ENSCSAVG00000009153	ENSCSAVG00000009161	ENSCSAVG00000009199	ENSCSAVG00000009201
Vertebrata	ANCESTRAL SPECIES	120																ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT01100000263540.A.a
Cyclostomata	ANCESTRAL SPECIES	15																ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT01100000263540.A.a.a	ENSGT00390000011180	ENSGT00940000155345	ENSGT00390000012029
Lamprey	MODERN SPECIES	1363																abcd4 (ENSPMAG00000002073) ##22
Hagfish	MODERN SPECIES	1064														ENSEBUG00000007667	APMAP (ENSEBUG00000008942)	abcd4 (ENSEBUG00000005807) ##22	ENSEBUG00000001260	ENSEBUG00000007932	eif1ad (ENSEBUG00000011023)	ENSEBUG00000016375	ENSEBUG00000012078	ENSEBUG00000001666	ENSEBUG00000006707	DLL4 (ENSEBUG00000003586)	ENSEBUG00000013330	timm50 (ENSEBUG00000010754)	cmtr1 (ENSEBUG00000007471)	ENSEBUG00000015667	slc25a29 (ENSEBUG00000015318)	UNC79 (ENSEBUG00000000936)	ENSEBUG00000011574
Gnathostomata	ANCESTRAL SPECIES	320																ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098
Elephant shark	MODERN SPECIES	1638					rpusd2 (ENSCMIG00000017193)	ENSCMIG00000017191	ENSCMIG00000017171	ENSCMIG00000017154	lrrc57 (ENSCMIG00000017151)	ENSCMIG00000017149	ENSCMIG00000017145	ENSCMIG00000017142	ENSCMIG00000017138	ENSCMIG00000017137	ENSCMIG00000017127	abcd4 (ENSCMIG00000017113) ##22	ENSCMIG00000017065	vsx2 (ENSCMIG00000017053)	lin52 (ENSCMIG00000017042)	aldh6a1 (ENSCMIG00000017034)	bbof1 (ENSCMIG00000017026)	ENTPD5 (ENSCMIG00000016894)	coq6 (ENSCMIG00000016839)	ENSCMIG00000016829	ENSCMIG00000016827	ENSCMIG00000016815	ahsa1a (ENSCMIG00000016805)	vipas39 (ENSCMIG00000016798)	ak7b (ENSCMIG00000016791)	papola (ENSCMIG00000016751)	sptlc2a (ENSCMIG00000016595)
Euteleostomi	ANCESTRAL SPECIES	293												ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098
Sarcopterygii	ANCESTRAL SPECIES	43	ENSGT00940000156765	ENSGT00940000166395	ENSGT00940000160358	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	226	ccdc88c (ENSLACG00000018962)	GPR68 (ENSLACG00000018951)	ENSLACG00000018931	RPS6KL1 (ENSLACG00000018929)	DLST (ENSLACG00000018918)	PROX2 (ENSLACG00000018909)	YLPM1 (ENSLACG00000018883)	fcf1 (ENSLACG00000018879)	AREL1 (ENSLACG00000018866)	ENSLACG00000018740	NPC2 (ENSLACG00000018729)	ISCA2 (ENSLACG00000018726)	SYNDIG1L (ENSLACG00000018632)	ENSLACG00000018629	VRTN (ENSLACG00000018560)	abcd4 (ENSLACG00000018527) ##22	ENSLACG00000018500	VSX2 (ENSLACG00000018477)	ALDH6A1 (ENSLACG00000018413)	BBOF1 (ENSLACG00000018403)	ENTPD5 (ENSLACG00000018392)	COQ6 (ENSLACG00000018382)	FAM161B (ENSLACG00000018376)	ZNF410 (ENSLACG00000018355)	EIF2B2 (ENSLACG00000018341)	MLH3 (ENSLACG00000018327)	ENSLACG00000018312	ENSLACG00000018306	NEK9 (ENSLACG00000018276)	TMED10 (ENSLACG00000018204)	FOS (ENSLACG00000018157)
Coelacanth	MODERN SPECIES	4222																ENSLACG00000000392 ##22
Tetrapoda	ANCESTRAL SPECIES	71	ENSGT00940000160599	ENSGT00940000166395	ENSGT00940000160358	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098
Anura	ANCESTRAL SPECIES	46	ENSGT00940000161630	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000156145	ENSGT00940000160947	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000159815	ENSGT00930000151014	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000010698
Leishan spiny toad	MODERN SPECIES	4	MDGA2 (ENSLLEG00000014636)	ENSLLEG00000015062	ENSLLEG00000015087	ENSLLEG00000015129	ENSLLEG00000015158	MRPL17 (ENSLLEG00000015487)	ENSLLEG00000015701	ENSLLEG00000015879	COQ6 (ENSLLEG00000015946)	ENTPD5 (ENSLLEG00000016244)	ALDH6A1 (ENSLLEG00000016549)	LIN52 (ENSLLEG00000019127)	VSX2 (ENSLLEG00000019267)	ENSLLEG00000019300	ISCA2 (ENSLLEG00000019338)	ABCD4 (ENSLLEG00000019459) ##22	ENSLLEG00000019633	ENSLLEG00000019733	WDHD1 (ENSLLEG00000019791)	SOCS4 (ENSLLEG00000020658)	ENSLLEG00000020680	ENSLLEG00000020708	SAMD4A (ENSLLEG00000020761)	ENSLLEG00000021257	PTGER2 (ENSLLEG00000021267)	FANCM (ENSLLEG00000021315)	ENSLLEG00000021492	FKBP3 (ENSLLEG00000021542)	ENSLLEG00000021679	PRPF39 (ENSLLEG00000021744)	C14orf28 (ENSLLEG00000021858)
Frog	MODERN SPECIES	8	fos (ENSXETG00000013238)	nek9 (ENSXETG00000013239)	ENSXETG00000013249	ENSXETG00000040528	mlh3 (ENSXETG00000013252)	eif2b2 (ENSXETG00000013261)	rps6kl1 (ENSXETG00000013263)	dlst (ENSXETG00000013264)	tmed10 (ENSXETG00000013236)	ENSXETG00000041959	ylpm1 (ENSXETG00000013269)	fcf1 (ENSXETG00000027288)	arel1 (ENSXETG00000013271)	isca2 (ENSXETG00000031871)	npc2 (ENSXETG00000013295)	abcd4 (ENSXETG00000027291) ##22	vsx2 (ENSXETG00000013302)	lin52 (ENSXETG00000027292)	aldh6a1 (ENSXETG00000013304)	bbof1 (ENSXETG00000002847)	entpd5 (ENSXETG00000030591)	coq6 (ENSXETG00000002853)	fam161b (ENSXETG00000030574)	znf410 (ENSXETG00000002861)	mrpl17 (ENSXETG00000039586)	ENSXETG00000002864	capns2 (ENSXETG00000002865)	dlc (ENSXETG00000002875)	adad2 (ENSXETG00000030929)	timm50 (ENSXETG00000002882)	il28b.1 (ENSXETG00000044892)
Amniota	ANCESTRAL SPECIES	8	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01040000244584	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098
Sauria	ANCESTRAL SPECIES	3	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01040000244584	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00390000012948.b
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00960000189443	ENSGT00390000012948.b
Archosauria	ANCESTRAL SPECIES	5	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00960000189443	ENSGT00390000012948.b
Aves	ANCESTRAL SPECIES	2	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00960000189443	ENSGT00390000012948.b
Neognathae	ANCESTRAL SPECIES	4	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00960000189443	ENSGT00390000012948.b
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00730000111160	ENSGT00960000189443	ENSGT00390000012948.b	ENSGT00390000013814
Anatidae	ANCESTRAL SPECIES	9	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00730000111160	ENSGT00960000189443	ENSGT00390000012948.b	ENSGT00390000013814	ENSGT00390000006916.d
Duck	MODERN SPECIES	23	FOS (ENSAPLG00000020281)	TMED10 (ENSAPLG00000020865)	NEK9 (ENSAPLG00000010802)	ENSAPLG00000010239	EIF2B2 (ENSAPLG00000010140)	DLST (ENSAPLG00000009194)	PROX2 (ENSAPLG00000024082)	YLPM1 (ENSAPLG00000002844)	FCF1 (ENSAPLG00000002613)	AREL1 (ENSAPLG00000001964)	LTBP2 (ENSAPLG00000015140)	NPC2 (ENSAPLG00000017454)	ISCA2 (ENSAPLG00000022258)	SYNDIG1L (ENSAPLG00000015081)	VRTN (ENSAPLG00000015007)	ABCD4 (ENSAPLG00000014842) ##22	LIN52 (ENSAPLG00000014829)	ALDH6A1 (ENSAPLG00000019703)	BBOF1 (ENSAPLG00000014370)	ENTPD5 (ENSAPLG00000014079)	COQ6 (ENSAPLG00000013830)	FAM161B (ENSAPLG00000013697)	ZNF410 (ENSAPLG00000013581)	FBXO33 (ENSAPLG00000013423)	ENSAPLG00000012614	TRAPPC6B (ENSAPLG00000012319)	GEMIN2 (ENSAPLG00000012052)	SEC23A (ENSAPLG00000011245)	CLEC14A (ENSAPLG00000017031)	SSTR1 (ENSAPLG00000011241)	TTC6 (ENSAPLG00000011230)
Pink-footed goose	MODERN SPECIES	23	ENSABRG00000005837	MLH3 (ENSABRG00000005858)	EIF2B2 (ENSABRG00000005958)	PGF (ENSABRG00000006020)	RPS6KL1 (ENSABRG00000006027)	DLST (ENSABRG00000006045)	PROX2 (ENSABRG00000006090)	YLPM1 (ENSABRG00000006121)	FCF1 (ENSABRG00000006245)	AREL1 (ENSABRG00000006312)	LTBP2 (ENSABRG00000006674)	NPC2 (ENSABRG00000007540)	ISCA2 (ENSABRG00000007546)	SYNDIG1L (ENSABRG00000007553)	VRTN (ENSABRG00000007556)	ABCD4 (ENSABRG00000007564) ##22	VSX2 (ENSABRG00000007568)	LIN52 (ENSABRG00000007580)	ALDH6A1 (ENSABRG00000007631)	BBOF1 (ENSABRG00000008070)	ENTPD5 (ENSABRG00000008136)	COQ6 (ENSABRG00000008491)	FAM161B (ENSABRG00000008618)	ZNF410 (ENSABRG00000008634)	FBXO33 (ENSABRG00000008655)	ENSABRG00000008675	PNN (ENSABRG00000008763)	ENSABRG00000008948	TRAPPC6B (ENSABRG00000008951)	GEMIN2 (ENSABRG00000008959)	SEC23A (ENSABRG00000009494)
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00730000111160	ENSGT00960000189443	ENSGT00390000012948.b	ENSGT00390000013814
Japanese quail	MODERN SPECIES	23	ENSCJPG00005019246	MLH3 (ENSCJPG00005019245)	EIF2B2 (ENSCJPG00005019244)	PGF (ENSCJPG00005019243)	RPS6KL1 (ENSCJPG00005019242)	DLST (ENSCJPG00005019241)	PROX2 (ENSCJPG00005019240)	YLPM1 (ENSCJPG00005019228)	FCF1 (ENSCJPG00005019226)	AREL1 (ENSCJPG00005019225)	LTBP2 (ENSCJPG00005019223)	NPC2 (ENSCJPG00005019222)	ISCA2 (ENSCJPG00005019221)	SYNDIG1L (ENSCJPG00005019220)	VRTN (ENSCJPG00005019218)	ABCD4 (ENSCJPG00005019217) ##22	ENSCJPG00005019216	VSX2 (ENSCJPG00005019215)	LIN52 (ENSCJPG00005019214)	ALDH6A1 (ENSCJPG00005019187)	ENSCJPG00005019186	ENTPD5 (ENSCJPG00005019103)	COQ6 (ENSCJPG00005019102)	FAM161B (ENSCJPG00005019101)	ZNF410 (ENSCJPG00005019100)	FBXO33 (ENSCJPG00005019099)	ENSCJPG00005019098	PNN (ENSCJPG00005019097)	ENSCJPG00005019096	TRAPPC6B (ENSCJPG00005019095)	GEMIN2 (ENSCJPG00005019094)
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814	ENSGT00390000006916.d
Chicken	MODERN SPECIES	34	ACYP1 (ENSGALG00010006128)	MLH3 (ENSGALG00010006123)	EIF2B2 (ENSGALG00010006113)	PGF (ENSGALG00010006107)	RPS6KL1 (ENSGALG00010006100)	DLST (ENSGALG00010006085)	PROX2 (ENSGALG00010005943)	YLPM1 (ENSGALG00010005998)	FCF1 (ENSGALG00010005989)	AREL1 (ENSGALG00010005981)	LTBP2 (ENSGALG00010004325)	NPC2 (ENSGALG00010004307)	ISCA2 (ENSGALG00010004380)	SYNDIG1L (ENSGALG00010006328)	VRTN (ENSGALG00010006280)	ABCD4 (ENSGALG00010006311) ##22	ENSGALG00010006291	VSX2 (ENSGALG00010006231)	LIN52 (ENSGALG00010006619)	ALDH6A1 (ENSGALG00010006580)	ENTPD5 (ENSGALG00010006568)	COQ6 (ENSGALG00010006557)	FAM161B (ENSGALG00010006531)	ZNF410 (ENSGALG00010006521)	FBXO33 (ENSGALG00010006515)	ENSGALG00010006478	PNN (ENSGALG00010006382)	TRAPPC6A (ENSGALG00010006363)	GEMIN2 (ENSGALG00010006352)	SEC23A (ENSGALG00010006343)	CLEC14A (ENSGALG00010006219)
Turkey	MODERN SPECIES	25	ENSMGAG00000012741	MLH3 (ENSMGAG00000012735)	EIF2B2 (ENSMGAG00000012733)	ENSMGAG00000021471	RPS6KL1 (ENSMGAG00000012729)	DLST (ENSMGAG00000012717)	PROX2 (ENSMGAG00000012715)	YLPM1 (ENSMGAG00000012707)	FCF1 (ENSMGAG00000012704)	AREL1 (ENSMGAG00000012699)	LTBP2 (ENSMGAG00000012684)	ENSMGAG00000012679	ENSMGAG00000012674	SYNDIG1L (ENSMGAG00000012668)	VRTN (ENSMGAG00000012667)	ABCD4 (ENSMGAG00000012657) ##22	ENSMGAG00000012650	VSX2 (ENSMGAG00000012646)	LIN52 (ENSMGAG00000012638)	ALDH6A1 (ENSMGAG00000012632)	BBOF1 (ENSMGAG00000012627)	ENTPD5 (ENSMGAG00000012613)	COQ6 (ENSMGAG00000017199)	FAM161B (ENSMGAG00000012611)	ZNF410 (ENSMGAG00000012603)	FBXO33 (ENSMGAG00000012602)	ENSMGAG00000012585	PNN (ENSMGAG00000012573)	TRAPPC6B (ENSMGAG00000012571)	GEMIN2 (ENSMGAG00000012566)	SEC23A (ENSMGAG00000012547)
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814
Golden eagle	MODERN SPECIES	11	ENSACCG00020002134	MLH3 (ENSACCG00020002145)	EIF2B2 (ENSACCG00020002164)	PGF (ENSACCG00020002218)	RPS6KL1 (ENSACCG00020002260)	DLST (ENSACCG00020002299)	PROX2 (ENSACCG00020002325)	YLPM1 (ENSACCG00020002356)	FCF1 (ENSACCG00020002385)	AREL1 (ENSACCG00020002407)	LTBP2 (ENSACCG00020002582)	NPC2 (ENSACCG00020002688)	ISCA2 (ENSACCG00020002695)	SYNDIG1L (ENSACCG00020002699)	VRTN (ENSACCG00020002717)	ABCD4 (ENSACCG00020002740) ##22	ENSACCG00020002758	VSX2 (ENSACCG00020002778)	LIN52 (ENSACCG00020002790)	ALDH6A1 (ENSACCG00020002831)	BBOF1 (ENSACCG00020002890)	ENTPD5 (ENSACCG00020002921)	COQ6 (ENSACCG00020002937)	ENSACCG00020002954	FAM161B (ENSACCG00020002973)	ZNF410 (ENSACCG00020002988)	FBXO33 (ENSACCG00020003011)	ENSACCG00020003040	PNN (ENSACCG00020003070)	TRAPPC6B (ENSACCG00020003083)	GEMIN2 (ENSACCG00020003102)
Kakapo	MODERN SPECIES	21	ENSSHBG00005001871	EIF2B2 (ENSSHBG00005001888)	PGF (ENSSHBG00005001915)	RPS6KL1 (ENSSHBG00005001934)	DLST (ENSSHBG00005001954)	PROX2 (ENSSHBG00005001976)	ENSSHBG00005001994	ENSSHBG00005002015	FCF1 (ENSSHBG00005002041)	AREL1 (ENSSHBG00005002081)	ENSSHBG00005002127	NPC2 (ENSSHBG00005002154)	ISCA2 (ENSSHBG00005002165)	SYNDIG1L (ENSSHBG00005002175)	VRTN (ENSSHBG00005002185)	ABCD4 (ENSSHBG00005002203) ##22	VSX2 (ENSSHBG00005002229)	LIN52 (ENSSHBG00005002241)	ALDH6A1 (ENSSHBG00005002249)	ENTPD5 (ENSSHBG00005002275)	COQ6 (ENSSHBG00005002286)	FAM161B (ENSSHBG00005002305)	ZNF410 (ENSSHBG00005002330)	FBXO33 (ENSSHBG00005002345)	ENSSHBG00005002379	ENSSHBG00005002411	PNN (ENSSHBG00005002426)	TRAPPC6B (ENSSHBG00005002446)	GEMIN2 (ENSSHBG00005002466)	SEC23A (ENSSHBG00005002506)	CLEC14A (ENSSHBG00005002548)
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814	ENSGT00390000006916.d	ENSGT00930000151088
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814	ENSGT00390000006916.d	ENSGT00940000161442
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814	ENSGT00390000006916.d	ENSGT00940000161442
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814	ENSGT00390000006916.d	ENSGT00940000161442
Common canary	MODERN SPECIES	3	ENSSCAG00000009801	MLH3 (ENSSCAG00000009812)	EIF2B2 (ENSSCAG00000009821)	PGF (ENSSCAG00000009832)	RPS6KL1 (ENSSCAG00000009834)	DLST (ENSSCAG00000009837)	PROX2 (ENSSCAG00000009845)	YLPM1 (ENSSCAG00000009864)	FCF1 (ENSSCAG00000009987)	AREL1 (ENSSCAG00000009993)	LTBP2 (ENSSCAG00000010015)	NPC2 (ENSSCAG00000010103)	ISCA2 (ENSSCAG00000010111)	SYNDIG1L (ENSSCAG00000010118)	VRTN (ENSSCAG00000010157)	ABCD4 (ENSSCAG00000010160) ##22	ENSSCAG00000010166	VSX2 (ENSSCAG00000010180)	LIN52 (ENSSCAG00000010182)	ALDH6A1 (ENSSCAG00000010194)	ENTPD5 (ENSSCAG00000010262)	COQ6 (ENSSCAG00000010275)	FAM161B (ENSSCAG00000010313)	ZNF410 (ENSSCAG00000010317)	FBXO33 (ENSSCAG00000010325)	ENSSCAG00000010329	PNN (ENSSCAG00000010348)	TRAPPC6B (ENSSCAG00000010370)	GEMIN2 (ENSSCAG00000010377)	SEC23A (ENSSCAG00000010381)	SSTR1 (ENSSCAG00000010385)
Zebra finch	MODERN SPECIES	27	ACYP1 (ENSTGUG00000012209)	MLH3 (ENSTGUG00000012203)	EIF2B2 (ENSTGUG00000012191)	PGF (ENSTGUG00000019217)	RPS6KL1 (ENSTGUG00000012186)	DLST (ENSTGUG00000012171)	PROX2 (ENSTGUG00000012170)	YLPM1 (ENSTGUG00000012165)	FCF1 (ENSTGUG00000020479)	AREL1 (ENSTGUG00000012150)	LTBP2 (ENSTGUG00000012131)	NPC2 (ENSTGUG00000016271)	ISCA2 (ENSTGUG00000016281)	SYNDIG1L (ENSTGUG00000022036)	VRTN (ENSTGUG00000012125)	ABCD4 (ENSTGUG00000012116) ##22	VSX2 (ENSTGUG00000012109)	LIN52 (ENSTGUG00000023527)	ALDH6A1 (ENSTGUG00000014114)	ENTPD5 (ENSTGUG00000023657)	COQ6 (ENSTGUG00000012085)	FAM161B (ENSTGUG00000012081)	ZNF410 (ENSTGUG00000012076)	FBXO33 (ENSTGUG00000012074)	ENSTGUG00000012056	ENSTGUG00000012054	PNN (ENSTGUG00000012046)	TRAPPC6B (ENSTGUG00000012044)	GEMIN2 (ENSTGUG00000012039)	SEC23A (ENSTGUG00000012026)	SSTR1 (ENSTGUG00000012024)
Medium ground finch	MODERN SPECIES	4	ZC2HC1C (ENSGFOG00000002249)	ENSGFOG00000002259	MLH3 (ENSGFOG00000002274)	EIF2B2 (ENSGFOG00000002313)	PGF (ENSGFOG00000002365)	RPS6KL1 (ENSGFOG00000002379)	DLST (ENSGFOG00000002394)	PROX2 (ENSGFOG00000002426)	YLPM1 (ENSGFOG00000002443)	FCF1 (ENSGFOG00000002486)	AREL1 (ENSGFOG00000002509)	NPC2 (ENSGFOG00000002662)	ISCA2 (ENSGFOG00000002678)	SYNDIG1L (ENSGFOG00000002688)	VRTN (ENSGFOG00000002699)	ABCD4 (ENSGFOG00000002710) ##22	ENSGFOG00000002748	VSX2 (ENSGFOG00000002875)	ALDH6A1 (ENSGFOG00000002901)	ENTPD5 (ENSGFOG00000002920)	COQ6 (ENSGFOG00000002978)	FAM161B (ENSGFOG00000003198)	ZNF410 (ENSGFOG00000003223)	FBXO33 (ENSGFOG00000003277)	ENSGFOG00000003291	ENSGFOG00000003365	PNN (ENSGFOG00000003391)	TRAPPC6B (ENSGFOG00000003420)	GEMIN2 (ENSGFOG00000003452)	SEC23A (ENSGFOG00000003519)	SSTR1 (ENSGFOG00000003541)
Flycatcher	MODERN SPECIES	24	MLH3 (ENSFALG00000006344)	EIF2B2 (ENSFALG00000006338)	PGF (ENSFALG00000028486)	RPS6KL1 (ENSFALG00000006331)	DLST (ENSFALG00000006316)	PROX2 (ENSFALG00000006312)	YLPM1 (ENSFALG00000006304)	FCF1 (ENSFALG00000006301)	AREL1 (ENSFALG00000006298)	ENSFALG00000026806	LTBP2 (ENSFALG00000006295)	ENSFALG00000006290	ENSFALG00000028034	SYNDIG1L (ENSFALG00000006284)	VRTN (ENSFALG00000015230)	ABCD4 (ENSFALG00000006280) ##22	ENSFALG00000006277	VSX2 (ENSFALG00000006274)	LIN52 (ENSFALG00000028779)	ALDH6A1 (ENSFALG00000024159)	ENTPD5 (ENSFALG00000006251)	FAM161B (ENSFALG00000006231)	COQ6 (ENSFALG00000006227)	FBXO33 (ENSFALG00000026462)	ENSFALG00000006201	TRAPPC6B (ENSFALG00000023215)	GEMIN2 (ENSFALG00000006169)	ENSFALG00000026212	SEC23A (ENSFALG00000006164)	SSTR1 (ENSFALG00000015219)	FOXA1 (ENSFALG00000028229)
Great tit	MODERN SPECIES	25	MLH3 (ENSPMJG00000016733)	EIF2B2 (ENSPMJG00000016732)	PGF (ENSPMJG00000016731)	RPS6KL1 (ENSPMJG00000016730)	DLST (ENSPMJG00000016729)	PROX2 (ENSPMJG00000016728)	ENSPMJG00000016727	YLPM1 (ENSPMJG00000016705)	FCF1 (ENSPMJG00000016704)	AREL1 (ENSPMJG00000016703)	LTBP2 (ENSPMJG00000016702)	NPC2 (ENSPMJG00000016701)	ISCA2 (ENSPMJG00000016700)	SYNDIG1L (ENSPMJG00000016699)	VRTN (ENSPMJG00000016698)	ABCD4 (ENSPMJG00000016697) ##22	ENSPMJG00000016696	VSX2 (ENSPMJG00000016695)	LIN52 (ENSPMJG00000016694)	ALDH6A1 (ENSPMJG00000016693)	ENTPD5 (ENSPMJG00000016692)	COQ6 (ENSPMJG00000016691)	FAM161B (ENSPMJG00000016690)	ZNF410 (ENSPMJG00000016689)	FBXO33 (ENSPMJG00000016688)	ENSPMJG00000016687	PNN (ENSPMJG00000016686)	TRAPPC6B (ENSPMJG00000016685)	GEMIN2 (ENSPMJG00000016684)	SEC23A (ENSPMJG00000016683)	CLEC14A (ENSPMJG00000016681)
African ostrich	MODERN SPECIES	477	ENSSCUG00000005308	MLH3 (ENSSCUG00000005309)	EIF2B2 (ENSSCUG00000005313)	PGF (ENSSCUG00000005314)	RPS6KL1 (ENSSCUG00000005315)	DLST (ENSSCUG00000005316)	PROX2 (ENSSCUG00000005317)	YLPM1 (ENSSCUG00000005318)	FCF1 (ENSSCUG00000005319)	AREL1 (ENSSCUG00000005320)	LTBP2 (ENSSCUG00000005321)	NPC2 (ENSSCUG00000005322)	ENSSCUG00000005324	SYNDIG1L (ENSSCUG00000005325)	VRTN (ENSSCUG00000005326)	ABCD4 (ENSSCUG00000005327) ##22	ENSSCUG00000005330	LIN52 (ENSSCUG00000005334)	ALDH6A1 (ENSSCUG00000005337)	BBOF1 (ENSSCUG00000005343)	ENTPD5 (ENSSCUG00000005345)	COQ6 (ENSSCUG00000005347)	FAM161B (ENSSCUG00000005355)	ZNF410 (ENSSCUG00000005358)	FBXO33 (ENSSCUG00000005361)	ENSSCUG00000005363	PNN (ENSSCUG00000005368)	TRAPPC6B (ENSSCUG00000005370)	GEMIN2 (ENSSCUG00000005372)	SEC23A (ENSSCUG00000005375)	SSTR1 (ENSSCUG00000005377)
Australian saltwater crocodile	MODERN SPECIES	64	ENSCPRG00005004949	MLH3 (ENSCPRG00005004921)	EIF2B2 (ENSCPRG00005004792)	PGF (ENSCPRG00005004776)	RPS6KL1 (ENSCPRG00005004756)	DLST (ENSCPRG00005004713)	PROX2 (ENSCPRG00005004701)	ENSCPRG00005004699	FCF1 (ENSCPRG00005004669)	AREL1 (ENSCPRG00005004372)	LTBP2 (ENSCPRG00005004192)	NPC2 (ENSCPRG00005004174)	ENSCPRG00005004172	SYNDIG1L (ENSCPRG00005004169)	VRTN (ENSCPRG00005004144)	ABCD4 (ENSCPRG00005004118) ##22	ENSCPRG00005004091	VSX2 (ENSCPRG00005004087)	LIN52 (ENSCPRG00005004069)	ALDH6A1 (ENSCPRG00005004064)	BBOF1 (ENSCPRG00005004060)	ENTPD5 (ENSCPRG00005004057)	FAM161B (ENSCPRG00005004054)	ZNF410 (ENSCPRG00005004040)	FBXO33 (ENSCPRG00005004034)	ENSCPRG00005004010	ENSCPRG00005004000	PNN (ENSCPRG00005003967)	ENSCPRG00005003961	TRAPPC6B (ENSCPRG00005003954)	GEMIN2 (ENSCPRG00005003941)
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00960000189443	ENSGT00390000012948.b
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098.g	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00960000189443	ENSGT00390000012948.b
Emydidae	ANCESTRAL SPECIES	2	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098.g	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814	ENSGT00390000006916.d
Three-toed box turtle	MODERN SPECIES	40	EIF2B2 (ENSTMTG00000014462)	PGF (ENSTMTG00000014442)	RPS6KL1 (ENSTMTG00000014348)	DLST (ENSTMTG00000014310)	PROX2 (ENSTMTG00000014292)	YLPM1 (ENSTMTG00000014275)	FCF1 (ENSTMTG00000014262)	AREL1 (ENSTMTG00000012332)	LTBP2 (ENSTMTG00000011882)	NPC2 (ENSTMTG00000011846)	ISCA2 (ENSTMTG00000011837)	ENSTMTG00000011818	ENSTMTG00000011800	SYNDIG1L (ENSTMTG00000011761)	VRTN (ENSTMTG00000011752)	ABCD4 (ENSTMTG00000011713) ##22	ENSTMTG00000011595	VSX2 (ENSTMTG00000011538)	LIN52 (ENSTMTG00000011525)	ALDH6A1 (ENSTMTG00000011517)	BBOF1 (ENSTMTG00000011492)	ENTPD5 (ENSTMTG00000011385)	COQ6 (ENSTMTG00000011354)	FAM161B (ENSTMTG00000011292)	ENSTMTG00000011257	ENSTMTG00000011248	FBXO33 (ENSTMTG00000011241)	ENSTMTG00000011200	PNN (ENSTMTG00000011177)	TRAPPC6B (ENSTMTG00000011161)	GEMIN2 (ENSTMTG00000011135)
painted turtle	MODERN SPECIES	13	ENSCPBG00000026240	MLH3 (ENSCPBG00000026238)	EIF2B2 (ENSCPBG00000026237)	PGF (ENSCPBG00000026236)	RPS6KL1 (ENSCPBG00000026235)	DLST (ENSCPBG00000026234)	PROX2 (ENSCPBG00000026233)	YLPM1 (ENSCPBG00000026232)	FCF1 (ENSCPBG00000026231)	AREL1 (ENSCPBG00000026230)	LTBP2 (ENSCPBG00000026229)	NPC2 (ENSCPBG00000026228)	ISCA2 (ENSCPBG00000026227)	SYNDIG1L (ENSCPBG00000026226)	VRTN (ENSCPBG00000026225)	ABCD4 (ENSCPBG00000026224) ##22	ENSCPBG00000026223	VSX2 (ENSCPBG00000026221)	LIN52 (ENSCPBG00000026219)	ALDH6A1 (ENSCPBG00000026218)	BBOF1 (ENSCPBG00000026217)	ENTPD5 (ENSCPBG00000026216)	COQ6 (ENSCPBG00000026215)	FAM161B (ENSCPBG00000026214)	ZNF410 (ENSCPBG00000026213)	FBXO33 (ENSCPBG00000026212)	ENSCPBG00000026211	PNN (ENSCPBG00000026209)	TRAPPC6B (ENSCPBG00000026208)	GEMIN2 (ENSCPBG00000026207)	SEC23A (ENSCPBG00000026206)
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098.g	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00960000189443	ENSGT00390000012948.b
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	2201	MLH3 (ENSCABG00000022738)	EIF2B2 (ENSCABG00000022733)	PGF (ENSCABG00000022732)	RPS6KL1 (ENSCABG00000022731)	DLST (ENSCABG00000022730)	PROX2 (ENSCABG00000022729)	YLPM1 (ENSCABG00000022719)	FCF1 (ENSCABG00000022715)	AREL1 (ENSCABG00000022711)	LTBP2 (ENSCABG00000022709)	NPC2 (ENSCABG00000022707)	ISCA2 (ENSCABG00000022706)	ENSCABG00000022705	SYNDIG1L (ENSCABG00000022702)	VRTN (ENSCABG00000022701)	ENSCABG00000022698 ##22	ENSCABG00000022697 ##22	ENSCABG00000022695 ##22	ENSCABG00000022694	VSX2 (ENSCABG00000022693)	LIN52 (ENSCABG00000022689)	ALDH6A1 (ENSCABG00000022686)	BBOF1 (ENSCABG00000022678)	ENTPD5 (ENSCABG00000022676)	COQ6 (ENSCABG00000022675)	FAM161B (ENSCABG00000022674)	ENSCABG00000022673	FBXO33 (ENSCABG00000022672)	ENSCABG00000022670	ENSCABG00000022669	PNN (ENSCABG00000022668)
Abingdon island giant tortoise	MODERN SPECIES	2201	PGF (ENSCABG00000022732)	RPS6KL1 (ENSCABG00000022731)	DLST (ENSCABG00000022730)	PROX2 (ENSCABG00000022729)	YLPM1 (ENSCABG00000022719)	FCF1 (ENSCABG00000022715)	AREL1 (ENSCABG00000022711)	LTBP2 (ENSCABG00000022709)	NPC2 (ENSCABG00000022707)	ISCA2 (ENSCABG00000022706)	ENSCABG00000022705	SYNDIG1L (ENSCABG00000022702)	VRTN (ENSCABG00000022701)	ENSCABG00000022698 ##22	ENSCABG00000022697 ##22	ENSCABG00000022695 ##22	ENSCABG00000022694	VSX2 (ENSCABG00000022693)	LIN52 (ENSCABG00000022689)	ALDH6A1 (ENSCABG00000022686)	BBOF1 (ENSCABG00000022678)	ENTPD5 (ENSCABG00000022676)	COQ6 (ENSCABG00000022675)	FAM161B (ENSCABG00000022674)	ENSCABG00000022673	FBXO33 (ENSCABG00000022672)	ENSCABG00000022670	ENSCABG00000022669	PNN (ENSCABG00000022668)	ENSCABG00000022667	TRAPPC6B (ENSCABG00000022666)
Abingdon island giant tortoise	MODERN SPECIES	2201	EIF2B2 (ENSCABG00000022733)	PGF (ENSCABG00000022732)	RPS6KL1 (ENSCABG00000022731)	DLST (ENSCABG00000022730)	PROX2 (ENSCABG00000022729)	YLPM1 (ENSCABG00000022719)	FCF1 (ENSCABG00000022715)	AREL1 (ENSCABG00000022711)	LTBP2 (ENSCABG00000022709)	NPC2 (ENSCABG00000022707)	ISCA2 (ENSCABG00000022706)	ENSCABG00000022705	SYNDIG1L (ENSCABG00000022702)	VRTN (ENSCABG00000022701)	ENSCABG00000022698 ##22	ENSCABG00000022697 ##22	ENSCABG00000022695 ##22	ENSCABG00000022694	VSX2 (ENSCABG00000022693)	LIN52 (ENSCABG00000022689)	ALDH6A1 (ENSCABG00000022686)	BBOF1 (ENSCABG00000022678)	ENTPD5 (ENSCABG00000022676)	COQ6 (ENSCABG00000022675)	FAM161B (ENSCABG00000022674)	ENSCABG00000022673	FBXO33 (ENSCABG00000022672)	ENSCABG00000022670	ENSCABG00000022669	PNN (ENSCABG00000022668)	ENSCABG00000022667
Goode s thornscrub tortoise	MODERN SPECIES	18	MLH3 (ENSGEVG00005002234)	EIF2B2 (ENSGEVG00005002271)	PGF (ENSGEVG00005002282)	RPS6KL1 (ENSGEVG00005002304)	DLST (ENSGEVG00005002330)	PROX2 (ENSGEVG00005002365)	ENSGEVG00005002378	YLPM1 (ENSGEVG00005002397)	FCF1 (ENSGEVG00005002437)	AREL1 (ENSGEVG00005002458)	LTBP2 (ENSGEVG00005002485)	NPC2 (ENSGEVG00005002529)	ISCA2 (ENSGEVG00005002545)	SYNDIG1L (ENSGEVG00005002558)	VRTN (ENSGEVG00005002571)	ABCD4 (ENSGEVG00005002587) ##22	ENSGEVG00005002626	VSX2 (ENSGEVG00005002657)	LIN52 (ENSGEVG00005002674)	ALDH6A1 (ENSGEVG00005002696)	BBOF1 (ENSGEVG00005002737)	ENTPD5 (ENSGEVG00005002761)	COQ6 (ENSGEVG00005002788)	FAM161B (ENSGEVG00005002808)	ENSGEVG00005002825	FBXO33 (ENSGEVG00005002839)	ENSGEVG00005002889	ENSGEVG00005002986	PNN (ENSGEVG00005002998)	TRAPPC6B (ENSGEVG00005003016)	GEMIN2 (ENSGEVG00005003038)
Chinese turtle	MODERN SPECIES	666	ENSPSIG00000017500	MLH3 (ENSPSIG00000017451)	EIF2B2 (ENSPSIG00000017425)	PGF (ENSPSIG00000017412)	RPS6KL1 (ENSPSIG00000017157)	DLST (ENSPSIG00000017022)	PROX2 (ENSPSIG00000017015)	YLPM1 (ENSPSIG00000016931)	FCF1 (ENSPSIG00000016906)	AREL1 (ENSPSIG00000016885)	LTBP2 (ENSPSIG00000016524)	NPC2 (ENSPSIG00000016428)	ISCA2 (ENSPSIG00000016409)	SYNDIG1L (ENSPSIG00000016403)	VRTN (ENSPSIG00000000381)	ABCD4 (ENSPSIG00000016190) ##22	ENSPSIG00000015706	VSX2 (ENSPSIG00000015600)	LIN52 (ENSPSIG00000015591)	ALDH6A1 (ENSPSIG00000015581)	BBOF1 (ENSPSIG00000015556)	ENTPD5 (ENSPSIG00000015281)	COQ6 (ENSPSIG00000014886)	FAM161B (ENSPSIG00000014710)	ZNF410 (ENSPSIG00000014551)	FBXO33 (ENSPSIG00000014543)	ENSPSIG00000014511	ENSPSIG00000013938	PNN (ENSPSIG00000013724)	TRAPPC6B (ENSPSIG00000013716)	GEMIN2 (ENSPSIG00000013560)
Lepidosauria	ANCESTRAL SPECIES	24	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01040000244584	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00390000012948.b
Episquamata	ANCESTRAL SPECIES		ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01040000244584	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00390000012948.b
Laterata	ANCESTRAL SPECIES	2	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a.f	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814
Common wall lizard	MODERN SPECIES		EIF2B2 (ENSPMRG00000007566)	PGF (ENSPMRG00000007576)	RPS6KL1 (ENSPMRG00000007595)	DLST (ENSPMRG00000007614)	PROX2 (ENSPMRG00000007626)	YLPM1 (ENSPMRG00000007645)	FCF1 (ENSPMRG00000007667)	AREL1 (ENSPMRG00000007679)	LTBP2 (ENSPMRG00000007807)	NPC2 (ENSPMRG00000008478)	ISCA2 (ENSPMRG00000008488)	ENSPMRG00000008501	SYNDIG1L (ENSPMRG00000008514)	ENSPMRG00000008522	ENSPMRG00000008526	ABCD4 (ENSPMRG00000008533) ##22	ENSPMRG00000008552	VSX2 (ENSPMRG00000008567)	LIN52 (ENSPMRG00000008577)	ALDH6A1 (ENSPMRG00000008590)	BBOF1 (ENSPMRG00000008600)	ENTPD5 (ENSPMRG00000008631)	COQ6 (ENSPMRG00000008700)	FAM161B (ENSPMRG00000008753)	ZNF410 (ENSPMRG00000008762)	FBXO33 (ENSPMRG00000008775)	ENSPMRG00000008788	ENSPMRG00000008801	ENSPMRG00000008811	TRAPPC6B (ENSPMRG00000008822)	GEMIN2 (ENSPMRG00000008836)
Argentine black and white tegu	MODERN SPECIES	14	ENSSMRG00000012585	ENSSMRG00000012587	EIF2B2 (ENSSMRG00000012590)	PGF (ENSSMRG00000012606)	RPS6KL1 (ENSSMRG00000012608)	DLST (ENSSMRG00000012609)	PROX2 (ENSSMRG00000012610)	YLPM1 (ENSSMRG00000012612)	FCF1 (ENSSMRG00000012613)	AREL1 (ENSSMRG00000012614)	LTBP2 (ENSSMRG00000012625)	NPC2 (ENSSMRG00000012626)	ISCA2 (ENSSMRG00000012627)	SYNDIG1L (ENSSMRG00000012632)	VRTN (ENSSMRG00000012633)	ABCD4 (ENSSMRG00000012634) ##22	ENSSMRG00000012641	VSX2 (ENSSMRG00000012645)	LIN52 (ENSSMRG00000012646)	ALDH6A1 (ENSSMRG00000012649)	BBOF1 (ENSSMRG00000012650)	ENTPD5 (ENSSMRG00000012653)	COQ6 (ENSSMRG00000012656)	FAM161B (ENSSMRG00000012657)	ZNF410 (ENSSMRG00000012658)	FBXO33 (ENSSMRG00000012663)	ENSSMRG00000012666	ENSSMRG00000012681	PNN (ENSSMRG00000012685)	TRAPPC6B (ENSSMRG00000012687)	GEMIN2 (ENSSMRG00000012689)
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837.e	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01040000244584	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00390000012948.b
Elapidae	ANCESTRAL SPECIES	3	ENSGT00390000011103.B	ENSGT00800000124176.x	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837.e	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814
Indian cobra	MODERN SPECIES		PGF (ENSNNAG00000016923)	RPS6KL1 (ENSNNAG00000016916)	DLST (ENSNNAG00000016902)	PROX2 (ENSNNAG00000016891)	ENSNNAG00000016875	ENSNNAG00000016859	FCF1 (ENSNNAG00000016842)	AREL1 (ENSNNAG00000016798)	LTBP2 (ENSNNAG00000012406)	NPC2 (ENSNNAG00000012028)	ISCA2 (ENSNNAG00000011983)	ENSNNAG00000011959	ENSNNAG00000011932	ENSNNAG00000011902	VRTN (ENSNNAG00000011891)	ABCD4 (ENSNNAG00000011119) ##22	ENSNNAG00000010718	VSX2 (ENSNNAG00000010585)	LIN52 (ENSNNAG00000010550)	ALDH6A1 (ENSNNAG00000010506)	BBOF1 (ENSNNAG00000010431)	ENTPD5 (ENSNNAG00000010377)	COQ6 (ENSNNAG00000010339)	FAM161B (ENSNNAG00000010214)	ZNF410 (ENSNNAG00000010140)	FBXO33 (ENSNNAG00000010090)	ENSNNAG00000009838	ENSNNAG00000009777	PNN (ENSNNAG00000009755)	TRAPPC6B (ENSNNAG00000009722)	PROSER1 (ENSNNAG00000009485)
Elapidae_a	ANCESTRAL SPECIES	4	ENSGT00390000011103.B	ENSGT00800000124176.x	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837.e	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814
Acanthophiinae	ANCESTRAL SPECIES	6	ENSGT00390000011103.B	ENSGT00800000124176.x	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837.e	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00950000182767.b.a.b.a	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814
Mainland tiger snake	MODERN SPECIES	8	ZC2HC1C (ENSNSUG00000002058)	ENSNSUG00000002067	MLH3 (ENSNSUG00000002069)	EIF2B2 (ENSNSUG00000002350)	RPS6KL1 (ENSNSUG00000002351)	DLST (ENSNSUG00000002388)	PROX2 (ENSNSUG00000002395)	YLPM1 (ENSNSUG00000002397)	FCF1 (ENSNSUG00000002881)	AREL1 (ENSNSUG00000002884)	LTBP2 (ENSNSUG00000002986)	NPC2 (ENSNSUG00000003016)	ISCA2 (ENSNSUG00000003017)	SYNDIG1L (ENSNSUG00000003021)	VRTN (ENSNSUG00000003032)	ABCD4 (ENSNSUG00000003033) ##22	ENSNSUG00000003039	VSX2 (ENSNSUG00000003040)	LIN52 (ENSNSUG00000003041)	ALDH6A1 (ENSNSUG00000003043)	BBOF1 (ENSNSUG00000003051)	ENTPD5 (ENSNSUG00000003064)	COQ6 (ENSNSUG00000003068)	FAM161B (ENSNSUG00000003113)	ZNF410 (ENSNSUG00000003115)	FBXO33 (ENSNSUG00000003120)	ENSNSUG00000003125	ENSNSUG00000003133	ENSNSUG00000003136	PNN (ENSNSUG00000003138)	TRAPPC6B (ENSNSUG00000003141)
Eastern brown snake	MODERN SPECIES	1	ENSPTXG00000004470	EIF2B2 (ENSPTXG00000004467)	PGF (ENSPTXG00000004465)	ENSPTXG00000004462	RPS6KL1 (ENSPTXG00000004436)	DLST (ENSPTXG00000004417)	PROX2 (ENSPTXG00000004414)	YLPM1 (ENSPTXG00000004411)	FCF1 (ENSPTXG00000004410)	AREL1 (ENSPTXG00000004408)	LTBP2 (ENSPTXG00000004404)	NPC2 (ENSPTXG00000004402)	ISCA2 (ENSPTXG00000004401)	SYNDIG1L (ENSPTXG00000004399)	VRTN (ENSPTXG00000004398)	ABCD4 (ENSPTXG00000004395) ##22	ENSPTXG00000004394	VSX2 (ENSPTXG00000004393)	LIN52 (ENSPTXG00000004392)	ALDH6A1 (ENSPTXG00000004391)	BBOF1 (ENSPTXG00000004390)	ENTPD5 (ENSPTXG00000004388)	COQ6 (ENSPTXG00000004387)	FAM161B (ENSPTXG00000004386)	ZNF410 (ENSPTXG00000004385)	FBXO33 (ENSPTXG00000004384)	ENSPTXG00000004380	ENSPTXG00000004375	PNN (ENSPTXG00000015970)	TRAPPC6B (ENSPTXG00000015968)	GEMIN2 (ENSPTXG00000015966)
Blue-lipped sea krait	MODERN SPECIES	6324																ABCD4 (ENSLLTG00000012084) ##22
Lizard	MODERN SPECIES		ENSACAG00000016844	MLH3 (ENSACAG00000016842)	EIF2B2 (ENSACAG00000016798)	PGF (ENSACAG00000016795)	RPS6KL1 (ENSACAG00000016769)	DLST (ENSACAG00000016718)	PROX2 (ENSACAG00000016714)	YLPM1 (ENSACAG00000016685)	FCF1 (ENSACAG00000037262)	AREL1 (ENSACAG00000016610)	LTBP2 (ENSACAG00000016494)	NPC2 (ENSACAG00000040505)	ENSACAG00000016482	SYNDIG1L (ENSACAG00000016466)	VRTN (ENSACAG00000016464)	ABCD4 (ENSACAG00000016423) ##22	ENSACAG00000016356	VSX2 (ENSACAG00000016343)	LIN52 (ENSACAG00000016339)	ALDH6A1 (ENSACAG00000016307)	BBOF1 (ENSACAG00000016293)	ENSACAG00000043498	ENTPD5 (ENSACAG00000016225)	COQ6 (ENSACAG00000016164)	FAM161B (ENSACAG00000016157)	ENSACAG00000022813	ZNF410 (ENSACAG00000016111)	FBXO33 (ENSACAG00000016101)	ENSACAG00000015954	ENSACAG00000043212	PNN (ENSACAG00000015894)
tuatara	MODERN SPECIES	522	ZC2HC1C (ENSSPUG00000014480)	ENSSPUG00000014488	MLH3 (ENSSPUG00000014576)	EIF2B2 (ENSSPUG00000014804)	ENSSPUG00000014813	RPS6KL1 (ENSSPUG00000014833)	DLST (ENSSPUG00000014913)	ENSSPUG00000014927	ENSSPUG00000014971	ENSSPUG00000015096	FCF1 (ENSSPUG00000015109)	AREL1 (ENSSPUG00000015123)	LTBP2 (ENSSPUG00000015468)	NPC2 (ENSSPUG00000016951)	ISCA2 (ENSSPUG00000016966)	ABCD4 (ENSSPUG00000017009) ##22	ENSSPUG00000017032	VSX2 (ENSSPUG00000017050)	LIN52 (ENSSPUG00000017058)	ALDH6A1 (ENSSPUG00000017066)	BBOF1 (ENSSPUG00000017078)	ENTPD5 (ENSSPUG00000017101)	COQ6 (ENSSPUG00000017115)	FAM161B (ENSSPUG00000017129)	ZNF410 (ENSSPUG00000017137)	FBXO33 (ENSSPUG00000017148)	ENSSPUG00000017161	ENSSPUG00000017176	ENSSPUG00000017191	ENSSPUG00000017196	TRAPPC6B (ENSSPUG00000017207)
Mammalia	ANCESTRAL SPECIES	16	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00940000167687	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01040000244584	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00390000016904	ENSGT01010000222336.a.a.a	ENSGT00390000013207	ENSGT00390000000083.a
Platypus	MODERN SPECIES		TMED10 (ENSOANG00000045312)	NEK9 (ENSOANG00000007750)	ENSOANG00000039964	ENSOANG00000043220	EIF2B2 (ENSOANG00000043193)	PGF (ENSOANG00000047675)	RPS6KL1 (ENSOANG00000048500)	DLST (ENSOANG00000039815)	ENSOANG00000009815	YLPM1 (ENSOANG00000009814)	FCF1 (ENSOANG00000039099)	AREL1 (ENSOANG00000002627)	ENSOANG00000051080	ENSOANG00000036503	ENSOANG00000042721	ABCD4 (ENSOANG00000045221) ##22	LIN52 (ENSOANG00000048133)	ALDH6A1 (ENSOANG00000043355)	BBOF1 (ENSOANG00000008768)	COQ6 (ENSOANG00000040258)	ZNF410 (ENSOANG00000040286)	PTGR2 (ENSOANG00000048501)	ENSOANG00000049648	MIDEAS (ENSOANG00000044931)	DNAL1 (ENSOANG00000045825)	ENSOANG00000037587	ENSOANG00000042764	ENSOANG00000042629	ENSOANG00000049924	ENSOANG00000037472	ENSOANG00000037772
Theria	ANCESTRAL SPECIES	14	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01040000244584	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00390000016904	ENSGT01010000222336.a.a.a	ENSGT00390000013207	ENSGT00390000000083.a
Marsupialia	ANCESTRAL SPECIES		ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01040000244584	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00390000016904	ENSGT01010000222336.a.a.a.nb	ENSGT01010000222336.a.a.a.mb.a	ENSGT00390000013207
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01040000244584	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00390000016904	ENSGT01010000222336.a.a.a.nb	ENSGT01010000222336.a.a.a.mb.b	ENSGT01010000222336.a.a.a.mb.a
Diprotodontia	ANCESTRAL SPECIES		ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01040000244584	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793.i.a	ENSGT00940000156793.j	ENSGT00940000157459	ENSGT00390000016904	ENSGT01010000222336.a.a.a.nb	ENSGT01010000222336.a.a.a.mb.b
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00390000008992.b #26	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01040000244584	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793.j	ENSGT00940000157459	ENSGT00390000016904	ENSGT01010000222336.a.a.a.nb	ENSGT01010000222336.a.a.a.mb.b
koala	MODERN SPECIES	24	ENSPCIG00000008743	MLH3 (ENSPCIG00000036351)	EIF2B2 (ENSPCIG00000008741)	PGF (ENSPCIG00000008740)	RPS6KL1 (ENSPCIG00000008738)	DLST (ENSPCIG00000008737)	ENSPCIG00000008736	YLPM1 (ENSPCIG00000008730)	FCF1 (ENSPCIG00000008728)	AREL1 (ENSPCIG00000008724)	LTBP2 (ENSPCIG00000008717)	ENSPCIG00000033435	ENSPCIG00000008706	SYNDIG1L (ENSPCIG00000008703)	VRTN (ENSPCIG00000008700)	ABCD4 (ENSPCIG00000010614) ##22	VSX2 (ENSPCIG00000010627)	LIN52 (ENSPCIG00000034115)	ENSPCIG00000010654 #26	ALDH6A1 (ENSPCIG00000010683)	BBOF1 (ENSPCIG00000015946)	ENTPD5 (ENSPCIG00000011325)	COQ6 (ENSPCIG00000011329)	FAM161B (ENSPCIG00000011338)	ZNF410 (ENSPCIG00000011341)	ENSPCIG00000022693	ENSPCIG00000034997	ENSPCIG00000005571	MIDEAS (ENSPCIG00000024091)	DNAL1 (ENSPCIG00000024092)	ENSPCIG00000024093
Common wonbat	MODERN SPECIES	1131	ENSVURG00010018133	MLH3 (ENSVURG00010018146)	EIF2B2 (ENSVURG00010018164)	PGF (ENSVURG00010018167)	RPS6KL1 (ENSVURG00010018173)	DLST (ENSVURG00010018183)	ENSVURG00010018192	YLPM1 (ENSVURG00010018201)	FCF1 (ENSVURG00010018218)	AREL1 (ENSVURG00010018228)	LTBP2 (ENSVURG00010018263)	ENSVURG00010018290	NPC2 (ENSVURG00010018300)	SYNDIG1L (ENSVURG00010018306)	VRTN (ENSVURG00010018318)	ABCD4 (ENSVURG00010018325) ##22	VSX2 (ENSVURG00010018334)	LIN52 (ENSVURG00010018345)	ENSVURG00010018361 #26	ALDH6A1 (ENSVURG00010018373)	ENSVURG00010018393	ENSVURG00010018395	ENTPD5 (ENSVURG00010018406)	COQ6 (ENSVURG00010018429)	FAM161B (ENSVURG00010018456)	ZNF410 (ENSVURG00010018464)	PTGR2 (ENSVURG00010018483)	MIDEAS (ENSVURG00010018511)	DNAL1 (ENSVURG00010018526)	ENSVURG00010018542	ENSVURG00010018553
Wallaby	MODERN SPECIES	2807																ABCD4 (ENSMEUG00000001750) ##22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000029322	MLH3 (ENSSHAG00000018012)	EIF2B2 (ENSSHAG00000023868)	PGF (ENSSHAG00000029245)	RPS6KL1 (ENSSHAG00000027019)	DLST (ENSSHAG00000031624)	YLPM1 (ENSSHAG00000018328)	ENSSHAG00000018304	FCF1 (ENSSHAG00000018398)	AREL1 (ENSSHAG00000018445)	LTBP2 (ENSSHAG00000018569)	ISCA2 (ENSSHAG00000025770)	ENSSHAG00000018714	SYNDIG1L (ENSSHAG00000018764)	VRTN (ENSSHAG00000021665)	ABCD4 (ENSSHAG00000018805) ##22	VSX2 (ENSSHAG00000028523)	LIN52 (ENSSHAG00000021401)	ALDH6A1 (ENSSHAG00000018886)	BBOF1 (ENSSHAG00000018550)	ENTPD5 (ENSSHAG00000022376)	COQ6 (ENSSHAG00000003508)	FAM161B (ENSSHAG00000003982)	ZNF410 (ENSSHAG00000004595)	PTGR2 (ENSSHAG00000005465)	MIDEAS (ENSSHAG00000031948)	ENSSHAG00000008828	ENSSHAG00000025570	ENSSHAG00000009654	HEATR4 (ENSSHAG00000009817)	RIOX1 (ENSSHAG00000010401)
Opossum	MODERN SPECIES		MLH3 (ENSMODG00000006037)	ENSMODG00000006061	ENSMODG00000006071	RPS6KL1 (ENSMODG00000006093)	DLST (ENSMODG00000006129)	ENSMODG00000006137	YLPM1 (ENSMODG00000006168)	FCF1 (ENSMODG00000006179)	AREL1 (ENSMODG00000006202)	ENSMODG00000029071	LTBP2 (ENSMODG00000006244)	ISCA2 (ENSMODG00000006248)	ENSMODG00000006270	ENSMODG00000024016	VRTN (ENSMODG00000006340)	ABCD4 (ENSMODG00000006369) ##22	VSX2 (ENSMODG00000006374)	LIN52 (ENSMODG00000006397)	ALDH6A1 (ENSMODG00000006429)	BBOF1 (ENSMODG00000006384)	ENTPD5 (ENSMODG00000006552)	COQ6 (ENSMODG00000006592)	FAM161B (ENSMODG00000006602)	ZNF410 (ENSMODG00000006622)	PTGR2 (ENSMODG00000006640)	MIDEAS (ENSMODG00000006656)	ENSMODG00000006662	ENSMODG00000006686	ENSMODG00000025737	ENSMODG00000024012	NUMB (ENSMODG00000006741)
Eutheria	ANCESTRAL SPECIES	12	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01050000245403
Atlantogenata	ANCESTRAL SPECIES	8	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Xenarthra	ANCESTRAL SPECIES	20	ENSGT00940000160947	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00530000064848	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a	ENSGT00390000000083.a
Sloth	MODERN SPECIES	1766																ABCD4 (ENSCHOG00000002433) ##22
Armadillo	MODERN SPECIES	1229	NEK9 (ENSDNOG00000001965)	ZC2HC1C (ENSDNOG00000046626)	ENSDNOG00000047029	MLH3 (ENSDNOG00000048962)	EIF2B2 (ENSDNOG00000032838)	PGF (ENSDNOG00000042336)	RPS6KL1 (ENSDNOG00000045055)	DLST (ENSDNOG00000033083)	PROX2 (ENSDNOG00000005528)	YLPM1 (ENSDNOG00000039154)	AREL1 (ENSDNOG00000003340)	LTBP2 (ENSDNOG00000016211)	ISCA2 (ENSDNOG00000034125)	ENSDNOG00000016210	SYNDIG1L (ENSDNOG00000032053)	ABCD4 (ENSDNOG00000008122) ##22	ENSDNOG00000032858	VSX2 (ENSDNOG00000005036)	LIN52 (ENSDNOG00000038226)	ALDH6A1 (ENSDNOG00000024213)	BBOF1 (ENSDNOG00000024781)	ENTPD5 (ENSDNOG00000039070)	COQ6 (ENSDNOG00000015448)	FAM161B (ENSDNOG00000015442)	ZNF410 (ENSDNOG00000015436)	PTGR2 (ENSDNOG00000037646)	MIDEAS (ENSDNOG00000008916)	DNAL1 (ENSDNOG00000008897)	ENSDNOG00000047944	ACOT4 (ENSDNOG00000035435)	ENSDNOG00000047237
Afrotheria	ANCESTRAL SPECIES	6	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Afrotheria_a	ANCESTRAL SPECIES	6	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Elephant	MODERN SPECIES	602	ENSLAFG00000016628	MLH3 (ENSLAFG00000022310)	EIF2B2 (ENSLAFG00000016616)	PGF (ENSLAFG00000016611)	RPS6KL1 (ENSLAFG00000032632)	DLST (ENSLAFG00000012552)	PROX2 (ENSLAFG00000012545)	YLPM1 (ENSLAFG00000012536)	ENSLAFG00000000724	AREL1 (ENSLAFG00000002793)	LTBP2 (ENSLAFG00000001609)	ISCA2 (ENSLAFG00000001607)	NPC2 (ENSLAFG00000002876)	SYNDIG1L (ENSLAFG00000004416)	VRTN (ENSLAFG00000026239)	ABCD4 (ENSLAFG00000002865) ##22	VSX2 (ENSLAFG00000002863)	LIN52 (ENSLAFG00000002534)	ALDH6A1 (ENSLAFG00000002533)	BBOF1 (ENSLAFG00000002530)	ENTPD5 (ENSLAFG00000010902)	COQ6 (ENSLAFG00000018122)	FAM161B (ENSLAFG00000030128)	ZNF410 (ENSLAFG00000018117)	PTGR2 (ENSLAFG00000018111)	MIDEAS (ENSLAFG00000001240)	ENSLAFG00000001238 ##9	DNAL1 (ENSLAFG00000001236)	ACOT6 (ENSLAFG00000027710)	ACOT4 (ENSLAFG00000013639)	ENSLAFG00000013635
Hyrax	MODERN SPECIES	1580																ABCD4 (ENSPCAG00000008149) ##22
Tenrec	MODERN SPECIES	1950															ENSETEG00000000874	ABCD4 (ENSETEG00000000872) ##22
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01050000245403.b
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01050000245403.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.b ##22
Hedgehog	MODERN SPECIES	14317																ABCD4 (ENSEEUG00000006235) ##22	ENSEEUG00000006431
Common shrew	MODERN SPECIES	1454																ENSSARG00000010100 ##22
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00530000064848	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01050000245403.b
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00530000064848	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.pb	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00530000064848	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.pb	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Equus	ANCESTRAL SPECIES	17	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Horse	MODERN SPECIES	16	ZC2HC1C (ENSECAG00000017661)	MLH3 (ENSECAG00000008011)	EIF2B2 (ENSECAG00000000332)	PGF (ENSECAG00000031273)	RPS6KL1 (ENSECAG00000014056)	DLST (ENSECAG00000000273)	ENSECAG00000023529	YLPM1 (ENSECAG00000016305)	FCF1 (ENSECAG00000008261)	AREL1 (ENSECAG00000059545)	LTBP2 (ENSECAG00000018631)	ISCA2 (ENSECAG00000018007)	NPC2 (ENSECAG00000018345)	SYNDIG1L (ENSECAG00000018296)	VRTN (ENSECAG00000038256)	ABCD4 (ENSECAG00000000282) ##22	VSX2 (ENSECAG00000023780)	ENSECAG00000048527	LIN52 (ENSECAG00000022953)	ALDH6A1 (ENSECAG00000009453)	ENSECAG00000057994	ENSECAG00000058911	BBOF1 (ENSECAG00000005420)	ENTPD5 (ENSECAG00000013212)	COQ6 (ENSECAG00000051009)	FAM161B (ENSECAG00000021896)	ZNF410 (ENSECAG00000014531)	PTGR2 (ENSECAG00000013284)	MIDEAS (ENSECAG00000005161)	PNMA1 (ENSECAG00000004251) ##9	DNAL1 (ENSECAG00000033122)
Donkey	MODERN SPECIES	27	MLH3 (ENSEASG00005012041)	EIF2B2 (ENSEASG00005012035)	PGF (ENSEASG00005012033)	RPS6KL1 (ENSEASG00005012030)	DLST (ENSEASG00005012025)	ENSEASG00005032702	YLPM1 (ENSEASG00005012016)	FCF1 (ENSEASG00005012011)	AREL1 (ENSEASG00005012006)	ENSEASG00005012000	LTBP2 (ENSEASG00005011719)	ISCA2 (ENSEASG00005032166)	NPC2 (ENSEASG00005023991)	SYNDIG1L (ENSEASG00005011683)	VRTN (ENSEASG00005011680)	ABCD4 (ENSEASG00005011677) ##22	VSX2 (ENSEASG00005011673)	LIN52 (ENSEASG00005031315)	ALDH6A1 (ENSEASG00005011664)	BBOF1 (ENSEASG00005011653)	ENTPD5 (ENSEASG00005011645)	COQ6 (ENSEASG00005011638)	FAM161B (ENSEASG00005011633)	ZNF410 (ENSEASG00005011626)	PTGR2 (ENSEASG00005011622)	MIDEAS (ENSEASG00005011617)	PNMA1 (ENSEASG00005011614) ##9	DNAL1 (ENSEASG00005011612)	ENSEASG00005037069	ENSEASG00005033187	ENSEASG00005036740
Chiroptera	ANCESTRAL SPECIES	15	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00530000064848	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.pb	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Megabat	MODERN SPECIES	922	MLH3 (ENSPVAG00000000664)	EIF2B2 (ENSPVAG00000000663)	PGF (ENSPVAG00000000662)	RPS6KL1 (ENSPVAG00000000661)	DLST (ENSPVAG00000000660)	PROX2 (ENSPVAG00000000659)	YLPM1 (ENSPVAG00000000658)	FCF1 (ENSPVAG00000000657)	ENSPVAG00000000656	AREL1 (ENSPVAG00000000655)	LTBP2 (ENSPVAG00000000653)	ISCA2 (ENSPVAG00000000652)	NPC2 (ENSPVAG00000000651)	SYNDIG1L (ENSPVAG00000000650)	VRTN (ENSPVAG00000000649)	ABCD4 (ENSPVAG00000000648) ##22	VSX2 (ENSPVAG00000000647)	LIN52 (ENSPVAG00000000646)	ALDH6A1 (ENSPVAG00000000645)	BBOF1 (ENSPVAG00000000644)	ENTPD5 (ENSPVAG00000000643)	COQ6 (ENSPVAG00000000642)	FAM161B (ENSPVAG00000000641)	ZNF410 (ENSPVAG00000000640)	PTGR2 (ENSPVAG00000000638)
Microchiroptera	ANCESTRAL SPECIES	19	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.pb	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Greater horseshoe bat	MODERN SPECIES	24	ZC2HC1C (ENSRFEG00010001234)	MLH3 (ENSRFEG00010001317)	EIF2B2 (ENSRFEG00010001498)	PGF (ENSRFEG00010001542)	RPS6KL1 (ENSRFEG00010001576)	DLST (ENSRFEG00010001634)	ENSRFEG00010001697	YLPM1 (ENSRFEG00010001752)	ENSRFEG00010001893	AREL1 (ENSRFEG00010001938)	LTBP2 (ENSRFEG00010002042)	ISCA2 (ENSRFEG00010002215)	NPC2 (ENSRFEG00010002250)	SYNDIG1L (ENSRFEG00010002259)	VRTN (ENSRFEG00010002267)	ABCD4 (ENSRFEG00010002301) ##22	VSX2 (ENSRFEG00010002363)	LIN52 (ENSRFEG00010002408)	ALDH6A1 (ENSRFEG00010002445)	BBOF1 (ENSRFEG00010002580)	ENTPD5 (ENSRFEG00010002649)	COQ6 (ENSRFEG00010002723)	FAM161B (ENSRFEG00010002768)	ZNF410 (ENSRFEG00010002841)	ENSRFEG00010002938	PTGR2 (ENSRFEG00010002957)	ENSRFEG00010002979	MIDEAS (ENSRFEG00010003038)	PNMA1 (ENSRFEG00010003104) ##9	DNAL1 (ENSRFEG00010003125)	ENSRFEG00010003184
Microbat	MODERN SPECIES	1172	NEK9 (ENSMLUG00000010541)	ZC2HC1C (ENSMLUG00000010524)	ENSMLUG00000007742	MLH3 (ENSMLUG00000005949)	ENSMLUG00000005942	ENSMLUG00000005931	RPS6KL1 (ENSMLUG00000005917)	DLST (ENSMLUG00000005909)	PROX2 (ENSMLUG00000005898)	YLPM1 (ENSMLUG00000004983)	ENSMLUG00000022193	ENSMLUG00000012381	ENSMLUG00000029419	NPC2 (ENSMLUG00000004558)	SYNDIG1L (ENSMLUG00000004551)	ABCD4 (ENSMLUG00000004541) ##22	VSX2 (ENSMLUG00000010090)
Carnivora	ANCESTRAL SPECIES		ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.pb	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Felidae	ANCESTRAL SPECIES	1	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00670000098076.y	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00390000004322.a.b.j.f.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.pb	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Panthera	ANCESTRAL SPECIES	3	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00670000098076.y	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00390000004322.a.b.j.f.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.pb	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Tiger	MODERN SPECIES	490	MLH3 (ENSPTIG00000015702)	EIF2B2 (ENSPTIG00000015724)	PGF (ENSPTIG00000015737)	RPS6KL1 (ENSPTIG00000015758)	DLST (ENSPTIG00000015793)	PROX2 (ENSPTIG00000015867)	YLPM1 (ENSPTIG00000015893)	ENSPTIG00000015948	AREL1 (ENSPTIG00000015968)	ENSPTIG00000015991	ISCA2 (ENSPTIG00000016002)	NPC2 (ENSPTIG00000016030)	SYNDIG1L (ENSPTIG00000016165)	VRTN (ENSPTIG00000016173)	ENSPTIG00000006594	ABCD4 (ENSPTIG00000016181) ##22	VSX2 (ENSPTIG00000016197)	LIN52 (ENSPTIG00000016204)	ALDH6A1 (ENSPTIG00000016228)	BBOF1 (ENSPTIG00000016264)	ENTPD5 (ENSPTIG00000016301)	COQ6 (ENSPTIG00000016344)	FAM161B (ENSPTIG00000016429)	ZNF410 (ENSPTIG00000016457)	PTGR2 (ENSPTIG00000016591)	MIDEAS (ENSPTIG00000016612)	PNMA1 (ENSPTIG00000006614) ##9	DNAL1 (ENSPTIG00000016650)	ENSPTIG00000016670	ENSPTIG00000016688	HEATR4 (ENSPTIG00000016707)
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00670000098076.y	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00390000004322.a.b.j.f.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.pb	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
lion	MODERN SPECIES	6	EIF2B2 (ENSPLOG00000001880)	PGF (ENSPLOG00000001839)	RPS6KL1 (ENSPLOG00000001818)	DLST (ENSPLOG00000001785)	ENSPLOG00000001770	YLPM1 (ENSPLOG00000001726)	ENSPLOG00000001674	AREL1 (ENSPLOG00000001636)	ENSPLOG00000001618	LTBP2 (ENSPLOG00000001497)	ISCA2 (ENSPLOG00000001378)	NPC2 (ENSPLOG00000001365)	SYNDIG1L (ENSPLOG00000001355)	VRTN (ENSPLOG00000001350)	ENSPLOG00000001333	ABCD4 (ENSPLOG00000001310) ##22	VSX2 (ENSPLOG00000001284)	LIN52 (ENSPLOG00000001251)	ALDH6A1 (ENSPLOG00000001208)	BBOF1 (ENSPLOG00000001180)	ENTPD5 (ENSPLOG00000001145)	COQ6 (ENSPLOG00000001111)	FAM161B (ENSPLOG00000001079)	ZNF410 (ENSPLOG00000001034)	PTGR2 (ENSPLOG00000000929)	MIDEAS (ENSPLOG00000000882)	PNMA1 (ENSPLOG00000000861) ##9	DNAL1 (ENSPLOG00000000836)	ENSPLOG00000000753	ACOT6 (ENSPLOG00000000692)	ACOT4 (ENSPLOG00000000671)
leopard	MODERN SPECIES	109	MLH3 (ENSPPRG00000022709)	EIF2B2 (ENSPPRG00000000321)	PGF (ENSPPRG00000001100)	RPS6KL1 (ENSPPRG00000003181)	DLST (ENSPPRG00000004226)	ENSPPRG00000004385	ENSPPRG00000004808	YLPM1 (ENSPPRG00000005704)	ENSPPRG00000006398	AREL1 (ENSPPRG00000006846)	LTBP2 (ENSPPRG00000010146)	ISCA2 (ENSPPRG00000011662)	NPC2 (ENSPPRG00000012026)	SYNDIG1L (ENSPPRG00000012500)	ENSPPRG00000020217	ABCD4 (ENSPPRG00000014193) ##22	VSX2 (ENSPPRG00000014452)	LIN52 (ENSPPRG00000014701)	ALDH6A1 (ENSPPRG00000016252)	BBOF1 (ENSPPRG00000018080)	ENTPD5 (ENSPPRG00000021643)	COQ6 (ENSPPRG00000025059)	FAM161B (ENSPPRG00000025014)	ZNF410 (ENSPPRG00000024973)	PTGR2 (ENSPPRG00000024906)	MIDEAS (ENSPPRG00000024652)	PNMA1 (ENSPPRG00000020738) ##9	DNAL1 (ENSPPRG00000024432)	ENSPPRG00000024290	ACOT4 (ENSPPRG00000024125)	ENSPPRG00000024078
Cat	MODERN SPECIES	237	EIF2B2 (ENSFCAG00000028235)	PGF (ENSFCAG00000036808)	RPS6KL1 (ENSFCAG00000000756)	DLST (ENSFCAG00000006372)	PROX2 (ENSFCAG00000028658)	YLPM1 (ENSFCAG00000033466)	FCF1 (ENSFCAG00000022753)	AREL1 (ENSFCAG00000006368)	ENSFCAG00000053735	LTBP2 (ENSFCAG00000006366)	ISCA2 (ENSFCAG00000040858)	NPC2 (ENSFCAG00000029894)	SYNDIG1L (ENSFCAG00000006364)	VRTN (ENSFCAG00000006363)	ENSFCAG00000041962	ABCD4 (ENSFCAG00000006206) ##22	VSX2 (ENSFCAG00000041695)	LIN52 (ENSFCAG00000042593)	ALDH6A1 (ENSFCAG00000006202)	BBOF1 (ENSFCAG00000006200)	COQ6 (ENSFCAG00000021892)	FAM161B (ENSFCAG00000012227)	ZNF410 (ENSFCAG00000030643)	PTGR2 (ENSFCAG00000024703)	MIDEAS (ENSFCAG00000012220)	PNMA1 (ENSFCAG00000012218) ##9	DNAL1 (ENSFCAG00000031313)	ENSFCAG00000034073	ENSFCAG00000037046	RIOX1 (ENSFCAG00000042968)	HEATR4 (ENSFCAG00000008136)
Caniformia	ANCESTRAL SPECIES	15	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.pb	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Canidae	ANCESTRAL SPECIES	4	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00670000098076.ab	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223.q	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Red fox	MODERN SPECIES	71	MLH3 (ENSVVUG00000005236)	ENSVVUG00000005229	PGF (ENSVVUG00000005220)	RPS6KL1 (ENSVVUG00000005216)	DLST (ENSVVUG00000005214)	PROX2 (ENSVVUG00000005203)	ENSVVUG00000005198	YLPM1 (ENSVVUG00000005181)	AREL1 (ENSVVUG00000005173)	ENSVVUG00000005169	LTBP2 (ENSVVUG00000005123)	ISCA2 (ENSVVUG00000005108)	NPC2 (ENSVVUG00000005100)	SYNDIG1L (ENSVVUG00000005089)	VRTN (ENSVVUG00000005086)	ABCD4 (ENSVVUG00000005058) ##22	VSX2 (ENSVVUG00000005042)	LIN52 (ENSVVUG00000005034)	ALDH6A1 (ENSVVUG00000005031)	BBOF1 (ENSVVUG00000004994)	ENTPD5 (ENSVVUG00000004984)	COQ6 (ENSVVUG00000004972)	FAM161B (ENSVVUG00000004966)	ZNF410 (ENSVVUG00000004918)	PTGR2 (ENSVVUG00000004897)	MIDEAS (ENSVVUG00000004878)	PNMA1 (ENSVVUG00000004868) ##9	ENSVVUG00000004860	ACOT6 (ENSVVUG00000004848)	ACOT4 (ENSVVUG00000004826)	RIOX1 (ENSVVUG00000004822)
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00670000098076.ab	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223.q	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Dingo	DUPLICATION
Dingo	MODERN SPECIES	161	ZC2HC1C (ENSCAFG00020002433)	ENSCAFG00020002438	MLH3 (ENSCAFG00020002443)	EIF2B2 (ENSCAFG00020002450)	PGF (ENSCAFG00020002459)	RPS6KL1 (ENSCAFG00020002467)	DLST (ENSCAFG00020002488)	PROX2 (ENSCAFG00020002501)	YLPM1 (ENSCAFG00020002557)	ENSCAFG00020003053	AREL1 (ENSCAFG00020003085)	LTBP2 (ENSCAFG00020003464)	ISCA2 (ENSCAFG00020003579)	ENSCAFG00020003586	VRTN (ENSCAFG00020003595)	ENSCAFG00020003619 ##22	ENSCAFG00020003625 ##22	VSX2 (ENSCAFG00020003629)	LIN52 (ENSCAFG00020003644)	ALDH6A1 (ENSCAFG00020003666)	BBOF1 (ENSCAFG00020004003)	ENTPD5 (ENSCAFG00020004058)	COQ6 (ENSCAFG00020004166)	FAM161B (ENSCAFG00020004178)	ZNF410 (ENSCAFG00020004185)	PTGR2 (ENSCAFG00020004198)	MIDEAS (ENSCAFG00020004292)	PNMA1 (ENSCAFG00020004385) ##9	DNAL1 (ENSCAFG00020004388)	ENSCAFG00020004395	ACOT6 (ENSCAFG00020004396)
Dingo	MODERN SPECIES	161	ENSCAFG00020002438	MLH3 (ENSCAFG00020002443)	EIF2B2 (ENSCAFG00020002450)	PGF (ENSCAFG00020002459)	RPS6KL1 (ENSCAFG00020002467)	DLST (ENSCAFG00020002488)	PROX2 (ENSCAFG00020002501)	YLPM1 (ENSCAFG00020002557)	ENSCAFG00020003053	AREL1 (ENSCAFG00020003085)	LTBP2 (ENSCAFG00020003464)	ISCA2 (ENSCAFG00020003579)	ENSCAFG00020003586	VRTN (ENSCAFG00020003595)	ENSCAFG00020003619 ##22	ENSCAFG00020003625 ##22	VSX2 (ENSCAFG00020003629)	LIN52 (ENSCAFG00020003644)	ALDH6A1 (ENSCAFG00020003666)	BBOF1 (ENSCAFG00020004003)	ENTPD5 (ENSCAFG00020004058)	COQ6 (ENSCAFG00020004166)	FAM161B (ENSCAFG00020004178)	ZNF410 (ENSCAFG00020004185)	PTGR2 (ENSCAFG00020004198)	MIDEAS (ENSCAFG00020004292)	PNMA1 (ENSCAFG00020004385) ##9	DNAL1 (ENSCAFG00020004388)	ENSCAFG00020004395	ACOT6 (ENSCAFG00020004396)	ACOT4 (ENSCAFG00020004399)
Dog	DUPLICATION
Dog	MODERN SPECIES	36	EIF2B2 (ENSCAFG00845014894)	ENSCAFG00845014841	RPS6KL1 (ENSCAFG00845014807)	DLST (ENSCAFG00845014735)	ENSCAFG00845014690	ENSCAFG00845014672	YLPM1 (ENSCAFG00845014628)	FCF1 (ENSCAFG00845014562)	AREL1 (ENSCAFG00845014520)	LTBP2 (ENSCAFG00845014362)	ISCA2 (ENSCAFG00845014307)	NPC2 (ENSCAFG00845014286)	ENSCAFG00845014257	ENSCAFG00845014241	ENSCAFG00845014218	ENSCAFG00845014165 ##22	VSX2 (ENSCAFG00845014112)	LIN52 (ENSCAFG00845014059)	ALDH6A1 (ENSCAFG00845013992)	BBOF1 (ENSCAFG00845013911)	ENTPD5 (ENSCAFG00845013833)	COQ6 (ENSCAFG00845013722)	FAM161B (ENSCAFG00845013672)	ZNF410 (ENSCAFG00845013533)	ENSCAFG00845013463	PTGR2 (ENSCAFG00845013371)	ELMSAN1 (ENSCAFG00845013233)	PNMA1 (ENSCAFG00845013185) ##9	DNAL1 (ENSCAFG00845013115)	ACOT6 (ENSCAFG00845013022)	RIOX1 (ENSCAFG00845012971)
Dog	MODERN SPECIES	141														ENSCAFG00845025058	ENSCAFG00845025020	ENSCAFG00845024787 ##22
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.pb	ENSGT01010000222336.a.a.a.ob.b	ENSGT01050000245403.b
Mustelinae	ANCESTRAL SPECIES	14	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b
Ferret	MODERN SPECIES	164	ENSMPUG00000009236	EIF2B2 (ENSMPUG00000009241)	MLH3 (ENSMPUG00000009249)	PGF (ENSMPUG00000009258)	RPS6KL1 (ENSMPUG00000009264)	DLST (ENSMPUG00000009271)	PROX2 (ENSMPUG00000009289)	YLPM1 (ENSMPUG00000009308)	FCF1 (ENSMPUG00000009321)	AREL1 (ENSMPUG00000009357)	LTBP2 (ENSMPUG00000009367)	ISCA2 (ENSMPUG00000009385)	NPC2 (ENSMPUG00000009402)	SYNDIG1L (ENSMPUG00000009458)	VRTN (ENSMPUG00000019665)	ABCD4 (ENSMPUG00000009467) ##22	VSX2 (ENSMPUG00000009490)	LIN52 (ENSMPUG00000009501)	ALDH6A1 (ENSMPUG00000009514)	BBOF1 (ENSMPUG00000009527)	ENTPD5 (ENSMPUG00000009544)	COQ6 (ENSMPUG00000009554)	FAM161B (ENSMPUG00000009566)	ZNF410 (ENSMPUG00000009582)	PTGR2 (ENSMPUG00000009594)	MIDEAS (ENSMPUG00000009645)	DNAL1 (ENSMPUG00000009657)	ACOT6 (ENSMPUG00000009704)
American mink	MODERN SPECIES		MLH3 (ENSNVIG00000015467)	ENSNVIG00000015550	PGF (ENSNVIG00000015578)	RPS6KL1 (ENSNVIG00000015611)	DLST (ENSNVIG00000015642)	ENSNVIG00000015674	YLPM1 (ENSNVIG00000015689)	FCF1 (ENSNVIG00000015797)	K0317 (ENSNVIG00000015832)	ENSNVIG00000015839	LTBP2 (ENSNVIG00000015855)	ISCA2 (ENSNVIG00000015997)	NPC2 (ENSNVIG00000016016)	SYNDIG1L (ENSNVIG00000016048)	VRTN (ENSNVIG00000016057)	ABCD4 (ENSNVIG00000016067) ##22	VSX2 (ENSNVIG00000016140)	ENSNVIG00000016153	ALDH6A1 (ENSNVIG00000016166)	CN045 (ENSNVIG00000016193)	ENTP5 (ENSNVIG00000016247)	COQ6 (ENSNVIG00000016297)	FAM161B (ENSNVIG00000016324)	ZN410 (ENSNVIG00000016346)	PTGR2 (ENSNVIG00000016532)	MIDEAS (ENSNVIG00000016586)	PNMA1 (ENSNVIG00000016683) ##9	DNAL1 (ENSNVIG00000016686)
Ursidae	ANCESTRAL SPECIES	10	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223.t	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.pb	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Giant Panda	MODERN SPECIES	5	ENSAMEG00000025824	MLH3 (ENSAMEG00000018320)	EIF2B2 (ENSAMEG00000018315)	ENSAMEG00000026677	RPS6KL1 (ENSAMEG00000018311)	DLST (ENSAMEG00000018307)	ENSAMEG00000029719	YLPM1 (ENSAMEG00000018299)	FCF1 (ENSAMEG00000018296)	AREL1 (ENSAMEG00000018293)	LTBP2 (ENSAMEG00000018286)	ISCA2 (ENSAMEG00000018270)	NPC2 (ENSAMEG00000024412)	SYNDIG1L (ENSAMEG00000024409)	VRTN (ENSAMEG00000027533)	ABCD4 (ENSAMEG00000018272) ##22	VSX2 (ENSAMEG00000018271)	LIN52 (ENSAMEG00000026519)	ALDH6A1 (ENSAMEG00000018257)	BBOF1 (ENSAMEG00000018255)	ENTPD5 (ENSAMEG00000018251)	COQ6 (ENSAMEG00000018242)	FAM161B (ENSAMEG00000018241)	ZNF410 (ENSAMEG00000029608)	PTGR2 (ENSAMEG00000018232)	MIDEAS (ENSAMEG00000018230)	PNMA1 (ENSAMEG00000019053) ##9	DNAL1 (ENSAMEG00000018225)	ENSAMEG00000025452	ACOT6 (ENSAMEG00000018224)	ACOT4 (ENSAMEG00000027361)
Ursus	ANCESTRAL SPECIES	11	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223.t	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.pb	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Polar bear	MODERN SPECIES	100	ENSUMAG00000008119	MLH3 (ENSUMAG00000008145)	EIF2B2 (ENSUMAG00000008256)	ENSUMAG00000008261	ENSUMAG00000008264	RPS6KL1 (ENSUMAG00000008272)	DLST (ENSUMAG00000008287)	PROX2 (ENSUMAG00000008333)	YLPM1 (ENSUMAG00000008386)	ENSUMAG00000008797	AREL1 (ENSUMAG00000008802)	LTBP2 (ENSUMAG00000008811)	ISCA2 (ENSUMAG00000008826)	NPC2 (ENSUMAG00000008831)	SYNDIG1L (ENSUMAG00000008850)	ABCD4 (ENSUMAG00000008856) ##22	LIN52 (ENSUMAG00000008858)	ALDH6A1 (ENSUMAG00000008875)	BBOF1 (ENSUMAG00000008882)	ENTPD5 (ENSUMAG00000008900)	COQ6 (ENSUMAG00000008906)	FAM161B (ENSUMAG00000008908)	ZNF410 (ENSUMAG00000008911)	PTGR2 (ENSUMAG00000008918)	MIDEAS (ENSUMAG00000008947)	PNMA1 (ENSUMAG00000008991) ##9	DNAL1 (ENSUMAG00000008993)	ENSUMAG00000008999	ACOT6 (ENSUMAG00000009002)	ENSUMAG00000009007	ENSUMAG00000009015
American black bear	MODERN SPECIES	7610																ENSUAMG00000011780 ##22
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.a	ENSGT00940000153117.B.c.b	ENSGT00530000064848	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01050000245403.b
Suina	ANCESTRAL SPECIES	24	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Chacoan peccary	MODERN SPECIES	885	MLH3 (ENSCWAG00000021039)	EIF2B2 (ENSCWAG00000021011)	PGF (ENSCWAG00000020978)	RPS6KL1 (ENSCWAG00000020956)	DLST (ENSCWAG00000020938)	ENSCWAG00000020923	YLPM1 (ENSCWAG00000020891)	FCF1 (ENSCWAG00000020846)	AREL1 (ENSCWAG00000020824)	ENSCWAG00000020814	LTBP2 (ENSCWAG00000020735)	ENSCWAG00000020697	NPC2 (ENSCWAG00000020691)	SYNDIG1L (ENSCWAG00000020686)	VRTN (ENSCWAG00000020682)	ABCD4 (ENSCWAG00000020632) ##22	VSX2 (ENSCWAG00000020616)	LIN52 (ENSCWAG00000020608)	ALDH6A1 (ENSCWAG00000020593)	BBOF1 (ENSCWAG00000020575)	ENTPD5 (ENSCWAG00000020536)	COQ6 (ENSCWAG00000020500)	FAM161B (ENSCWAG00000020474)	ZNF410 (ENSCWAG00000020396)	PTGR2 (ENSCWAG00000020361)	MIDEAS (ENSCWAG00000020304)	PNMA1 (ENSCWAG00000020295) ##9	DNAL1 (ENSCWAG00000020227)	ENSCWAG00000020210	ENSCWAG00000020201	ENSCWAG00000020187
Pig	MODERN SPECIES	15	ENSSSCG00000051291	EIF2B2 (ENSSSCG00000002377)	PGF (ENSSSCG00000050616)	RPS6KL1 (ENSSSCG00000002375)	DLST (ENSSSCG00000002374)	PROX2 (ENSSSCG00000002373)	YLPM1 (ENSSSCG00000002372)	FCF1 (ENSSSCG00000039202)	AREL1 (ENSSSCG00000002370)	ENSSSCG00000031305	LTBP2 (ENSSSCG00000002368)	ISCA2 (ENSSSCG00000002367)	NPC2 (ENSSSCG00000002366)	SYNDIG1L (ENSSSCG00000025000)	VRTN (ENSSSCG00000002361)	ABCD4 (ENSSSCG00000038231) ##22	VSX2 (ENSSSCG00000002363)	LIN52 (ENSSSCG00000055314)	ALDH6A1 (ENSSSCG00000002357)	BBOF1 (ENSSSCG00000002356)	ENTPD5 (ENSSSCG00000002355)	COQ6 (ENSSSCG00000002354)	FAM161B (ENSSSCG00000002353)	ZNF410 (ENSSSCG00000002352)	PTGR2 (ENSSSCG00000002351)	MIDEAS (ENSSSCG00000002350)	PNMA1 (ENSSSCG00000062320) ##9	DNAL1 (ENSSSCG00000039469)	ACOT6 (ENSSSCG00000002348)	ENSSSCG00000002349	ENSSSCG00000056471
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.a	ENSGT00940000153117.B.c.b	ENSGT00530000064848	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01050000245403.b
Camelidae	ANCESTRAL SPECIES	8	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00530000064848	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.b
Arabian camel	MODERN SPECIES	32	ENSCDRG00005001055	MLH3 (ENSCDRG00005000924)	EIF2B2 (ENSCDRG00005000865)	PGF (ENSCDRG00005000818)	RPS6KL1 (ENSCDRG00005000787)	DLST (ENSCDRG00005000759)	ENSCDRG00005000746	YLPM1 (ENSCDRG00005000671)	FCF1 (ENSCDRG00005000630)	AREL1 (ENSCDRG00005000590)	LTBP2 (ENSCDRG00005000468)	ISCA2 (ENSCDRG00005000399)	NPC2 (ENSCDRG00005000375)	SYNDIG1L (ENSCDRG00005000359)	VRTN (ENSCDRG00005000338)	ABCD4 (ENSCDRG00005000282) ##22	VSX2 (ENSCDRG00005000228)	LIN52 (ENSCDRG00005000203)	ALDH6A1 (ENSCDRG00005000113)	BBOF1 (ENSCDRG00005008989)	ENTPD5 (ENSCDRG00005008760)	COQ6 (ENSCDRG00005008512)	FAM161B (ENSCDRG00005008454)	ZNF410 (ENSCDRG00005008036)	PTGR2 (ENSCDRG00005007915)	MIDEAS (ENSCDRG00005007531)	PNMA1 (ENSCDRG00005007500) ##9	DNAL1 (ENSCDRG00005007353)	ENSCDRG00005007214	RIOX1 (ENSCDRG00005007193)	HEATR4 (ENSCDRG00005007067)
Alpaca	MODERN SPECIES	746													ISCA2 (ENSVPAG00000000817)	NPC2 (ENSVPAG00000000816)	ENSVPAG00000000814	ABCD4 (ENSVPAG00000000811) ##22	ENSVPAG00000000810	LIN52 (ENSVPAG00000000808)	ALDH6A1 (ENSVPAG00000000805)	BBOF1 (ENSVPAG00000000802)	ENTPD5 (ENSVPAG00000000800)	COQ6 (ENSVPAG00000000798)	ENSVPAG00000000796	ZNF410 (ENSVPAG00000000794)	PTGR2 (ENSVPAG00000000792)
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01050000245403.b
Pecora	ANCESTRAL SPECIES	6	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01050000245403.b
Yarkand deer	MODERN SPECIES	3	MLH3 (ENSCHYG00000006695)	EIF2B2 (ENSCHYG00000006598)	ENSCHYG00000006497	RPS6KL1 (ENSCHYG00000006336)	DLST (ENSCHYG00000006173)	PROX2 (ENSCHYG00000006125)	YLPM1 (ENSCHYG00000005805)	FCF1 (ENSCHYG00000005712)	AREL1 (ENSCHYG00000005628)	ENSCHYG00000005614	LTBP2 (ENSCHYG00000005208)	ISCA2 (ENSCHYG00000004587)	ENSCHYG00000004570	SYNDIG1L (ENSCHYG00000023714)	VRTN (ENSCHYG00000023697)	ABCD4 (ENSCHYG00000023537) ##22	VSX2 (ENSCHYG00000023493)	ENSCHYG00000023471	LIN52 (ENSCHYG00000023413)	ALDH6A1 (ENSCHYG00000023203)	BBOF1 (ENSCHYG00000023091)	ENTPD5 (ENSCHYG00000022954)	COQ6 (ENSCHYG00000022859)	FAM161B (ENSCHYG00000022799)	ZNF410 (ENSCHYG00000022523)	PTGR2 (ENSCHYG00000022406)	MIDEAS (ENSCHYG00000022251)	PNMA1 (ENSCHYG00000022219) ##9	DNAL1 (ENSCHYG00000022094)	ACOT6 (ENSCHYG00000021951)	RIOX1 (ENSCHYG00000021826)
Percora_a	ANCESTRAL SPECIES	8	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b.e.a	ENSGT01050000245403.b
Siberian musk deer	MODERN SPECIES	260	MLH3 (ENSMMSG00000022075)	EIF2B2 (ENSMMSG00000022041)	PGF (ENSMMSG00000022015)	RPS6KL1 (ENSMMSG00000021985)	DLST (ENSMMSG00000021926)	ENSMMSG00000021897	YLPM1 (ENSMMSG00000021806)	FCF1 (ENSMMSG00000021755)	AREL1 (ENSMMSG00000021715)	ENSMMSG00000021702	LTBP2 (ENSMMSG00000021618)	ISCA2 (ENSMMSG00000021564)	NPC2 (ENSMMSG00000021533)	SYNDIG1L (ENSMMSG00000021508)	VRTN (ENSMMSG00000021493)	ABCD4 (ENSMMSG00000021448) ##22	VSX2 (ENSMMSG00000021411)	LIN52 (ENSMMSG00000021369)	ALDH6A1 (ENSMMSG00000021323)	BBOF1 (ENSMMSG00000021217)	ENTPD5 (ENSMMSG00000021133)	COQ6 (ENSMMSG00000021004)	FAM161B (ENSMMSG00000020978)	ZNF410 (ENSMMSG00000020927)	PTGR2 (ENSMMSG00000020873)	MIDEAS (ENSMMSG00000020815)	PNMA1 (ENSMMSG00000020797) ##9	DNAL1 (ENSMMSG00000020722)	ACOT6 (ENSMMSG00000020688)	ENSMMSG00000020660	ENSMMSG00000020634
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00990000210987	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904.a.a	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b.e.a	ENSGT01050000245403.b
Bovinae	ANCESTRAL SPECIES	11	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00990000210987	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793.e	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904.a.a	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b.f.a	ENSGT01010000222336.a.a.a.ob.a.a.r
Bos	ANCESTRAL SPECIES	13	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00990000210987	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793.e	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904.a.a	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b.e.a	ENSGT01010000222336.a.a.a.ob.a.b.f.a
Bos_b	ANCESTRAL SPECIES	11	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000165826.i	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793.e	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b.e.a	ENSGT01010000222336.a.a.a.ob.a.a.r
Cow	MODERN SPECIES	1	MLH3 (ENSBTAG00000019279)	EIF2B2 (ENSBTAG00000008664)	PGF (ENSBTAG00000013688)	RPS6KL1 (ENSBTAG00000006688)	DLST (ENSBTAG00000006463)	PROX2 (ENSBTAG00000015052)	YLPM1 (ENSBTAG00000008287)	FCF1 (ENSBTAG00000020381)	AREL1 (ENSBTAG00000020379)	ENSBTAG00000050205	LTBP2 (ENSBTAG00000021957)	ISCA2 (ENSBTAG00000021956)	NPC2 (ENSBTAG00000021955)	SYNDIG1L (ENSBTAG00000052950)	VRTN (ENSBTAG00000005774)	ABCD4 (ENSBTAG00000014633) ##22	VSX2 (ENSBTAG00000014632)	LIN52 (ENSBTAG00000030557)	ALDH6A1 (ENSBTAG00000018469)	ENSBTAG00000053938	BBOF1 (ENSBTAG00000018467)	ENTPD5 (ENSBTAG00000020334)	COQ6 (ENSBTAG00000020331)	FAM161B (ENSBTAG00000020329)	ZNF410 (ENSBTAG00000020327)	PTGR2 (ENSBTAG00000003747)	MIDEAS (ENSBTAG00000009272)	PNMA1 (ENSBTAG00000009271) ##9	ENSBTAG00000009783 ##18	DNAL1 (ENSBTAG00000015930)	ENSBTAG00000010270
Hybrid Bos Indicus	MODERN SPECIES	1	EIF2B2 (ENSBIXG00005025394)	PGF (ENSBIXG00005025480)	RPS6KL1 (ENSBIXG00005025559)	DLST (ENSBIXG00005007402)	ENSBIXG00005025629	YLPM1 (ENSBIXG00005025680)	ENSBIXG00005004386	ENSBIXG00005025743	AREL1 (ENSBIXG00005006183)	ENSBIXG00005025782	LTBP2 (ENSBIXG00005025977)	ENSBIXG00005026039	NPC2 (ENSBIXG00005026057)	SYNDIG1L (ENSBIXG00005026092)	VRTN (ENSBIXG00005026108)	ABCD4 (ENSBIXG00005026163) ##22	VSX2 (ENSBIXG00005026200)	LIN52 (ENSBIXG00005026222)	ALDH6A1 (ENSBIXG00005026295)	ENSBIXG00005026312	BBOF1 (ENSBIXG00005005787)	ENTPD5 (ENSBIXG00005026381)	COQ6 (ENSBIXG00005026440)	FAM161B (ENSBIXG00005026463)	ZNF410 (ENSBIXG00005026565)	ENSBIXG00005004549	MIDEAS (ENSBIXG00005026640)	PNMA1 (ENSBIXG00005026657) ##9	ACOT6 (ENSBIXG00005026754)	ACOT4 (ENSBIXG00005026831)	RIOX1 (ENSBIXG00005026859)
Bos_a	ANCESTRAL SPECIES	1	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00990000210987	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793.e	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904.a.a	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b.f.a	ENSGT01010000222336.a.a.a.ob.a.a.r
Domestic yak	MODERN SPECIES	2	PGF (ENSBGRG00000008113)	RPS6KL1 (ENSBGRG00000007964)	DLST (ENSBGRG00000007671)	ENSBGRG00000007645	ENSBGRG00000007592	YLPM1 (ENSBGRG00000007101)	ENSBGRG00000006917	AREL1 (ENSBGRG00000006814)	ENSBGRG00000006783	ENSBGRG00000006766	LTBP2 (ENSBGRG00000006692)	ISCA2 (ENSBGRG00000006642)	NPC2 (ENSBGRG00000006618)	SYNDIG1L (ENSBGRG00000006594)	VRTN (ENSBGRG00000006578)	ABCD4 (ENSBGRG00000006381) ##22	VSX2 (ENSBGRG00000006307)	LIN52 (ENSBGRG00000006226)	ALDH6A1 (ENSBGRG00000006095)	BBOF1 (ENSBGRG00000005994)	ENTPD5 (ENSBGRG00000005910)	COQ6 (ENSBGRG00000018611)	FAM161B (ENSBGRG00000018523)	ZNF410 (ENSBGRG00000018207)	ENSBGRG00000018082	MIDEAS (ENSBGRG00000017732)	PNMA1 (ENSBGRG00000017709) ##9	ENSBGRG00000017562	ENSBGRG00000017483 ##18	ENSBGRG00000017419 ##18	ENSBGRG00000017382
Wild yak	MODERN SPECIES	1230	ENSBMUG00000007560	MLH3 (ENSBMUG00000007555)	EIF2B2 (ENSBMUG00000007544)	PGF (ENSBMUG00000007539)	RPS6KL1 (ENSBMUG00000007535)	DLST (ENSBMUG00000007522)	ENSBMUG00000007517	YLPM1 (ENSBMUG00000007507)	ENSBMUG00000007493	AREL1 (ENSBMUG00000007478)	ENSBMUG00000007472	LTBP2 (ENSBMUG00000007454)	ISCA2 (ENSBMUG00000007353)	NPC2 (ENSBMUG00000007338)	SYNDIG1L (ENSBMUG00000007323)	ABCD4 (ENSBMUG00000007298) ##22	VSX2 (ENSBMUG00000007282)
American bison	MODERN SPECIES	3282	ENSBBBG00000014347	MLH3 (ENSBBBG00000014333)	EIF2B2 (ENSBBBG00000003247)	PGF (ENSBBBG00000014283)	DLST (ENSBBBG00000003225)	ENSBBBG00000014217	PROX2 (ENSBBBG00000002886)	YLPM1 (ENSBBBG00000014199)	ENSBBBG00000014171	AREL1 (ENSBBBG00000003202)	LTBP2 (ENSBBBG00000003189)	ISCA2 (ENSBBBG00000014070)	NPC2 (ENSBBBG00000014061)	SYNDIG1L (ENSBBBG00000014055)	VRTN (ENSBBBG00000003129)	ABCD4 (ENSBBBG00000003123) ##22	VSX2 (ENSBBBG00000014020)	LIN52 (ENSBBBG00000003104)	ALDH6A1 (ENSBBBG00000003099)	BBOF1 (ENSBBBG00000003080)	ENTPD5 (ENSBBBG00000013986)	COQ6 (ENSBBBG00000003060)	FAM161B (ENSBBBG00000013948)	ZNF410 (ENSBBBG00000003035)	PTGR2 (ENSBBBG00000002974)	MIDEAS (ENSBBBG00000013823)	PNMA1 (ENSBBBG00000013798) ##9	DNAL1 (ENSBBBG00000013792)	ACOT6 (ENSBBBG00000013759)	ENSBBBG00000013752	ENSBBBG00000002936
Caprinae	ANCESTRAL SPECIES	11	ENSGT00390000010172.y	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00990000210987	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904.a.a	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b.e.a	ENSGT01010000222336.a.a.a.ob.a.b.e.b
Rambouillet Sheep	MODERN SPECIES	23	ENSOARG00020017002	PGF (ENSOARG00020016856)	RPS6KL1 (ENSOARG00020016765)	DLST (ENSOARG00020016709)	ENSOARG00020016649	YLPM1 (ENSOARG00020016026)	FCF1 (ENSOARG00020015954)	AREL1 (ENSOARG00020015742)	ENSOARG00020015685	ENSOARG00020015656	LTBP2 (ENSOARG00020014686)	ISCA2 (ENSOARG00020014514)	NPC2 (ENSOARG00020014455)	SYNDIG1L (ENSOARG00020014401)	VRTN (ENSOARG00020014385)	ABCD4 (ENSOARG00020014282) ##22	VSX2 (ENSOARG00020014208)	LIN52 (ENSOARG00020014138)	ALDH6A1 (ENSOARG00020014015)	BBOF1 (ENSOARG00020013850)	ENTPD5 (ENSOARG00020013612)	COQ6 (ENSOARG00020013490)	FAM161B (ENSOARG00020013369)	ZNF410 (ENSOARG00020013087)	PTGR2 (ENSOARG00020012884)	MIDEAS (ENSOARG00020012681)	PNMA1 (ENSOARG00020012650) ##9	ENSOARG00020012555	ENSOARG00020012528	ACOT6 (ENSOARG00020012471)	ENSOARG00020012431
Goat	MODERN SPECIES	1	EIF2B2 (ENSCHIG00000020696)	ENSCHIG00000007844	PGF (ENSCHIG00000021989)	RPS6KL1 (ENSCHIG00000016739)	DLST (ENSCHIG00000015687)	PROX2 (ENSCHIG00000010770)	YLPM1 (ENSCHIG00000016765)	FCF1 (ENSCHIG00000012196)	AREL1 (ENSCHIG00000023661)	ENSCHIG00000021080	LTBP2 (ENSCHIG00000008338)	ISCA2 (ENSCHIG00000006650)	NPC2 (ENSCHIG00000019346)	SYNDIG1L (ENSCHIG00000019047)	VRTN (ENSCHIG00000022707)	ABCD4 (ENSCHIG00000017269) ##22	VSX2 (ENSCHIG00000015233)	LIN52 (ENSCHIG00000024176)	ALDH6A1 (ENSCHIG00000011927)	BBOF1 (ENSCHIG00000009138)	ENTPD5 (ENSCHIG00000026804)	COQ6 (ENSCHIG00000000785)	FAM161B (ENSCHIG00000018206)	ZNF410 (ENSCHIG00000002289)	PTGR2 (ENSCHIG00000018563)	MIDEAS (ENSCHIG00000025351)	PNMA1 (ENSCHIG00000005409) ##9	ENSCHIG00000012677	ENSCHIG00000025534	ENSCHIG00000015407	ENSCHIG00000026395
Cetacea	ANCESTRAL SPECIES	2	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223.p	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223.p	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000008092.a.k.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223.p	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000008092.a.k.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223.p	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000008092.a.k.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00910000147973	ENSGT00390000013771.d	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223.p	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000008092.a.k.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Narwhal	MODERN SPECIES	308	EIF2B2 (ENSMMNG00015017142)	PGF (ENSMMNG00015017047)	RPS6KL1 (ENSMMNG00015017009)	DLST (ENSMMNG00015016974)	ENSMMNG00015016949	YLPM1 (ENSMMNG00015016889)	ENSMMNG00015016846	FCF1 (ENSMMNG00015016775)	AREL1 (ENSMMNG00015016706)	ENSMMNG00015016679	LTBP2 (ENSMMNG00015016409)	ISCA2 (ENSMMNG00015016275)	ENSMMNG00015016236	SYNDIG1L (ENSMMNG00015016210)	VRTN (ENSMMNG00015016199)	ABCD4 (ENSMMNG00015016106) ##22	VSX2 (ENSMMNG00015016032)	LIN52 (ENSMMNG00015015990)	ALDH6A1 (ENSMMNG00015015950)	ENSMMNG00015015913	BBOF1 (ENSMMNG00015015862)	ENTPD5 (ENSMMNG00015015799)	COQ6 (ENSMMNG00015015740)	FAM161B (ENSMMNG00015015710)	ZNF410 (ENSMMNG00015015646)	PTGR2 (ENSMMNG00015015571)	MIDEAS (ENSMMNG00015015547)	PNMA1 (ENSMMNG00015015536) ##9	DNAL1 (ENSMMNG00015015521)	ENSMMNG00015015508	ACOT4 (ENSMMNG00015015501)
Beluga whale	MODERN SPECIES	24	PGF (ENSDLEG00000004519)	RPS6KL1 (ENSDLEG00000004528)	DLST (ENSDLEG00000004541)	PROX2 (ENSDLEG00000004556)	YLPM1 (ENSDLEG00000004568)	FCF1 (ENSDLEG00000004582)	AREL1 (ENSDLEG00000004596)	ENSDLEG00000004609	ENSDLEG00000004614	ENSDLEG00000004617	ENSDLEG00000004618	ISCA2 (ENSDLEG00000004621)	NPC2 (ENSDLEG00000004626)	SYNDIG1L (ENSDLEG00000004630)	VRTN (ENSDLEG00000004633)	ABCD4 (ENSDLEG00000004639) ##22	VSX2 (ENSDLEG00000004663)	ENSDLEG00000004670	LIN52 (ENSDLEG00000004674)	ALDH6A1 (ENSDLEG00000004681)	BBOF1 (ENSDLEG00000004689)	ENSDLEG00000004696	ENTPD5 (ENSDLEG00000004699)	COQ6 (ENSDLEG00000004706)	FAM161B (ENSDLEG00000004716)	ENSDLEG00000004722	PTGR2 (ENSDLEG00000004727)	ELMSAN1 (ENSDLEG00000004742)	PNMA1 (ENSDLEG00000004762) ##9	DNAL1 (ENSDLEG00000004767)	ACOT6 (ENSDLEG00000004777)
Vaquita	MODERN SPECIES	11	MLH3 (ENSPSNG00000010427)	EIF2B2 (ENSPSNG00000010274)	PGF (ENSPSNG00000010102)	RPS6KL1 (ENSPSNG00000010039)	DLST (ENSPSNG00000009959)	ENSPSNG00000009885	YLPM1 (ENSPSNG00000009718)	FCF1 (ENSPSNG00000017954)	AREL1 (ENSPSNG00000017910)	ENSPSNG00000017877	LTBP2 (ENSPSNG00000017786)	ENSPSNG00000017665	ENSPSNG00000017639	SYNDIG1L (ENSPSNG00000017585)	VRTN (ENSPSNG00000017561)	ABCD4 (ENSPSNG00000017443) ##22	VSX2 (ENSPSNG00000017375)	LIN52 (ENSPSNG00000017321)	ALDH6A1 (ENSPSNG00000017217)	ENSPSNG00000017159	BBOF1 (ENSPSNG00000016939)	ENTPD5 (ENSPSNG00000016874)	COQ6 (ENSPSNG00000016733)	FAM161B (ENSPSNG00000016683)	ZNF410 (ENSPSNG00000016492)	ENSPSNG00000016386	ENSPSNG00000016323	MIDEAS (ENSPSNG00000016252)	PNMA1 (ENSPSNG00000016212) ##9	DNAL1 (ENSPSNG00000016080)	ENSPSNG00000016028
Dolphin	MODERN SPECIES	653																ABCD4 (ENSTTRG00000006447) ##22	VSX2 (ENSTTRG00000006446)	LIN52 (ENSTTRG00000006444)	ALDH6A1 (ENSTTRG00000006442)	BBOF1 (ENSTTRG00000006441)	ENTPD5 (ENSTTRG00000006438)	COQ6 (ENSTTRG00000006436)	FAM161B (ENSTTRG00000006434)	ZNF410 (ENSTTRG00000006431)	PTGR2 (ENSTTRG00000006429)
Sperm whale	MODERN SPECIES	2	ACYP1 (ENSPCTG00005022706)	EIF2B2 (ENSPCTG00005022702)	PGF (ENSPCTG00005022697)	ENSPCTG00005022692	DLST (ENSPCTG00005022685)	ENSPCTG00005022683	YLPM1 (ENSPCTG00005022679)	FCF1 (ENSPCTG00005022674)	AREL1 (ENSPCTG00005022673)	ENSPCTG00005022671	LTBP2 (ENSPCTG00005022652)	ISCA2 (ENSPCTG00005022629)	NPC2 (ENSPCTG00005022616)	SYNDIG1L (ENSPCTG00005022606)	VRTN (ENSPCTG00005022596)	ABCD4 (ENSPCTG00005022592) ##22	VSX2 (ENSPCTG00005022587)	LIN52 (ENSPCTG00005022555)	ALDH6A1 (ENSPCTG00005022500)	ENSPCTG00005022468	BBOF1 (ENSPCTG00005022417)	ENTPD5 (ENSPCTG00005022235)	COQ6 (ENSPCTG00005022055)	FAM161B (ENSPCTG00005021920)	ZNF410 (ENSPCTG00005021580)	PTGR2 (ENSPCTG00005021277)	ELMSAN1 (ENSPCTG00005021121)	PNMA1 (ENSPCTG00005021041) ##9	DNAL1 (ENSPCTG00005020845)	ACOT6 (ENSPCTG00005020732)	ACOT4 (ENSPCTG00005020651)
Blue whale	MODERN SPECIES	11	ENSBMSG00010007280	MLH3 (ENSBMSG00010007225)	EIF2B2 (ENSBMSG00010007177)	PGF (ENSBMSG00010007155)	RPS6KL1 (ENSBMSG00010007119)	DLST (ENSBMSG00010007068)	ENSBMSG00010007040	YLPM1 (ENSBMSG00010007012)	ENSBMSG00010006988	ENSBMSG00010006980	AREL1 (ENSBMSG00010006958)	LTBP2 (ENSBMSG00010006856)	ISCA2 (ENSBMSG00010006777)	ENSBMSG00010006750	SYNDIG1L (ENSBMSG00010006725)	ABCD4 (ENSBMSG00010006684) ##22	VSX2 (ENSBMSG00010006660)	LIN52 (ENSBMSG00010006623)	ENSBMSG00010006546	BBOF1 (ENSBMSG00010006525)	ENTPD5 (ENSBMSG00010006501)	COQ6 (ENSBMSG00010006401)	FAM161B (ENSBMSG00010006375)	ZNF410 (ENSBMSG00010006528)	PTGR2 (ENSBMSG00010006503)	ENSBMSG00010006484	MIDEAS (ENSBMSG00010006405)	PNMA1 (ENSBMSG00010006363) ##9	DNAL1 (ENSBMSG00010006338)	ACOT6 (ENSBMSG00010006298)	ACOT4 (ENSBMSG00010006272)
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Primates	ANCESTRAL SPECIES	2	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Tarsier	MODERN SPECIES	4818										FCF1 (ENSTSYG00000006327)	AREL1 (ENSTSYG00000011716)	LTBP2 (ENSTSYG00000029013)	ISCA2 (ENSTSYG00000000379)	NPC2 (ENSTSYG00000000378)	SYNDIG1L (ENSTSYG00000014525)	ABCD4 (ENSTSYG00000000004) ##22	VSX2 (ENSTSYG00000004403)
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000159815	ENSGT00930000151014	ENSGT00830000128380.q.a	ENSGT00390000000227.g.a	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700.a.b	ENSGT00390000006223	ENSGT00940000160251.h	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00390000000227.g.a	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b.a	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700.a.a	ENSGT00390000006223	ENSGT00940000160251.h.a	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b.k ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Cebidae	ANCESTRAL SPECIES	3	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00390000000227.g.a	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b.a	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700.a.a	ENSGT00940000160251.h.a	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b.k ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00390000000227.g.a	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b.a	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700.a.a	ENSGT00940000160251.h.a	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b.k ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Bolivian squirrel monkey	MODERN SPECIES	52	ENSSBOG00000030708	MLH3 (ENSSBOG00000018430)	EIF2B2 (ENSSBOG00000009267)	PGF (ENSSBOG00000021274)	RPS6KL1 (ENSSBOG00000021119)	DLST (ENSSBOG00000020050)	PROX2 (ENSSBOG00000035644)	YLPM1 (ENSSBOG00000020052)	ENSSBOG00000024765	AREL1 (ENSSBOG00000031683)	LTBP2 (ENSSBOG00000025865)	ENSSBOG00000031449	ENSSBOG00000028294	NPC2 (ENSSBOG00000023280)	SYNDIG1L (ENSSBOG00000034851)	ABCD4 (ENSSBOG00000033353) ##22	VSX2 (ENSSBOG00000031713)	ENSSBOG00000022778	LIN52 (ENSSBOG00000034707)	ALDH6A1 (ENSSBOG00000023484)	BBOF1 (ENSSBOG00000032274)	ENTPD5 (ENSSBOG00000026410)	COQ6 (ENSSBOG00000028801)	ENSSBOG00000034409	ZNF410 (ENSSBOG00000032182)	PTGR2 (ENSSBOG00000026681)	MIDEAS (ENSSBOG00000029806)	ENSSBOG00000025995	ENSSBOG00000022744	ENSSBOG00000021771	ACOT4 (ENSSBOG00000011298)
Capuchin	MODERN SPECIES	54	PGF (ENSCCAG00000019441)	RPS6KL1 (ENSCCAG00000029866)	ENSCCAG00000027520	ENSCCAG00000035622	PROX2 (ENSCCAG00000026255)	YLPM1 (ENSCCAG00000024788)	FCF1 (ENSCCAG00000032200)	AREL1 (ENSCCAG00000037317)	ENSCCAG00000029235	LTBP2 (ENSCCAG00000027073)	ISCA2 (ENSCCAG00000029795)	ENSCCAG00000022939	ENSCCAG00000036597	SYNDIG1L (ENSCCAG00000030697)	VRTN (ENSCCAG00000019702)	ENSCCAG00000032477 ##22	VSX2 (ENSCCAG00000023324)	LIN52 (ENSCCAG00000031296)	ALDH6A1 (ENSCCAG00000033515)	BBOF1 (ENSCCAG00000025685)	ENTPD5 (ENSCCAG00000027798)	COQ6 (ENSCCAG00000032550)	FAM161B (ENSCCAG00000032037)	ZNF410 (ENSCCAG00000030057)	PTGR2 (ENSCCAG00000033557)	MIDEAS (ENSCCAG00000037089)	PNMA1 (ENSCCAG00000015385) ##9	DNAL1 (ENSCCAG00000024968)	ACOT6 (ENSCCAG00000030425)	ENSCCAG00000028536	ACOT4 (ENSCCAG00000026334)
Marmoset	MODERN SPECIES	1	EIF2B2 (ENSCJAG00000044557)	PGF (ENSCJAG00000020572)	RPS6KL1 (ENSCJAG00000020566)	DLST (ENSCJAG00000020551)	PROX2 (ENSCJAG00000020548)	YLPM1 (ENSCJAG00000020522)	FCF1 (ENSCJAG00000020518)	AREL1 (ENSCJAG00000020497)	LTBP2 (ENSCJAG00000020480)	ENSCJAG00000020479	ENSCJAG00000057253	NPC2 (ENSCJAG00000020476)	SYNDIG1L (ENSCJAG00000072523)	ENSCJAG00000075451	ENSCJAG00000055155	ABCD4 (ENSCJAG00000020446) ##22	VSX2 (ENSCJAG00000020442)	LIN52 (ENSCJAG00000047702)	ALDH6A1 (ENSCJAG00000020412)	BBOF1 (ENSCJAG00000020404)	ENTPD5 (ENSCJAG00000020391)	COQ6 (ENSCJAG00000065534)	FAM161B (ENSCJAG00000020363)	ZNF410 (ENSCJAG00000020308)	ENSCJAG00000085540	PTGR2 (ENSCJAG00000011505)	MIDEAS (ENSCJAG00000009935)	PNMA1 (ENSCJAG00000042056) ##9	DNAL1 (ENSCJAG00000009922)	ENSCJAG00000037095	ACOT4 (ENSCJAG00000009911)
Mas night monkey	DUPLICATION
Mas night monkey	DUPLICATION
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	906	ARMC5 (ENSANAG00000035888)	TGFB1I1 (ENSANAG00000024534)	SLC5A2 (ENSANAG00000034352)	RUSF1 (ENSANAG00000027786)	AHSP (ENSANAG00000010533)	ENSANAG00000037397	ENSANAG00000020429	ENSANAG00000022403	ENSANAG00000024644	ENSANAG00000038261	KRBOX5 (ENSANAG00000027751)	ENSANAG00000024839	ENSANAG00000038269	ENSANAG00000016721	ENSANAG00000038393	ENSANAG00000035834 ##22	ENSANAG00000036084	ENSANAG00000035233
Mas night monkey	MODERN SPECIES	620																ENSANAG00000024092 ##22	ENSANAG00000022789	ZNF248 (ENSANAG00000026311)	ENSANAG00000024768
Mas night monkey	MODERN SPECIES	621											ENSANAG00000031446	ENSANAG00000023989	ENSANAG00000017014	ENSANAG00000026361	ENSANAG00000031212	ENSANAG00000021187 ##22
Mas night monkey	MODERN SPECIES	825	MLH3 (ENSANAG00000022727)	EIF2B2 (ENSANAG00000025345)	PGF (ENSANAG00000032847)	RPS6KL1 (ENSANAG00000030516)	DLST (ENSANAG00000035966)	PROX2 (ENSANAG00000038021)	YLPM1 (ENSANAG00000024403)	ENSANAG00000026765	AREL1 (ENSANAG00000027921)	ENSANAG00000023213	LTBP2 (ENSANAG00000036688)	ENSANAG00000028498	NPC2 (ENSANAG00000035008)	ENSANAG00000021950	SYNDIG1L (ENSANAG00000024522)	ENSANAG00000022365 ##22	VSX2 (ENSANAG00000023147)	LIN52 (ENSANAG00000022775)	ALDH6A1 (ENSANAG00000027801)	BBOF1 (ENSANAG00000023794)	ENTPD5 (ENSANAG00000024903)	COQ6 (ENSANAG00000031639)	FAM161B (ENSANAG00000032869)	ZNF410 (ENSANAG00000030872)	PTGR2 (ENSANAG00000037046)	MIDEAS (ENSANAG00000029623)	PNMA1 (ENSANAG00000019370) ##9	DNAL1 (ENSANAG00000030053)	ACOT6 (ENSANAG00000011051)	ACOT4 (ENSANAG00000020773)	ENSANAG00000025037
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.b.l ##22
Cebidae	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.b.l ##22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.b.l ##22
Capuchin	MODERN SPECIES	783							ENSCCAG00000024210	ENSCCAG00000023705	ENSCCAG00000031292	ZNF267 (ENSCCAG00000029096)	ENSCCAG00000032097	ENSCCAG00000023655	ENSCCAG00000030073	ENSCCAG00000033550	ENSCCAG00000023910	ENSCCAG00000035133 ##22
Mas night monkey	MODERN SPECIES	760																ENSANAG00000029038 ##22	ENSANAG00000028169	ENSANAG00000035571	ENSANAG00000019045	ENSANAG00000033721	USP18 (ENSANAG00000038004)	TUBA8 (ENSANAG00000020993)	PEX26 (ENSANAG00000033468)	ENSANAG00000024037	MICAL3 (ENSANAG00000021919)	BID (ENSANAG00000035339)	BCL2L13 (ENSANAG00000017578)	ENSANAG00000037241	SLC25A18 (ENSANAG00000036909)	ENSANAG00000021362	CECR2 (ENSANAG00000035159)
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00390000000227.g.a	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b	ENSGT00390000006223	ENSGT00940000160251.h	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00900000143785	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014.h.a	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00910000148032	ENSGT00390000005700.a.b	ENSGT00390000006223	ENSGT00940000160251.h	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00900000143785	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Hominidae	ANCESTRAL SPECIES	14	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014.h.a	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00910000148032	ENSGT00390000005700.a.b	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00900000143785	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014.h.a	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00910000148032	ENSGT00390000005700.a.b	ENSGT00940000160251.h	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000164709.a.b.b.a.a.b.b.b.a.a.a.b.b	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00900000143785	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014.h.a	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00910000148032	ENSGT00390000005700.a.b	ENSGT00940000160251.h	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000164709.a.b.b.a.a.b.b.b.a.a.a.b.b	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00900000143785	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b
Pan	ANCESTRAL SPECIES	8	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014.h.a	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00910000148032	ENSGT00390000005700.a.b	ENSGT00940000160251.h	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000164709.a.b.b.a.a.b.b.b.a.a.a.b.b	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT00550000076451.a.b.a	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00900000143785	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904
Bonobo	MODERN SPECIES	5	EIF2B2 (ENSPPAG00000031197)	ENSPPAG00000031002	RPS6KL1 (ENSPPAG00000030997)	DLST (ENSPPAG00000031259)	PROX2 (ENSPPAG00000043369)	YLPM1 (ENSPPAG00000013242)	FCF1 (ENSPPAG00000042313)	AREL1 (ENSPPAG00000029208)	LTBP2 (ENSPPAG00000037513)	ENSPPAG00000017395	ISCA2 (ENSPPAG00000023891)	ENSPPAG00000040331	ENSPPAG00000039350	SYNDIG1L (ENSPPAG00000038287)	VRTN (ENSPPAG00000016158)	ABCD4 (ENSPPAG00000041355) ##22	ENSPPAG00000028020	LIN52 (ENSPPAG00000029287)	ALDH6A1 (ENSPPAG00000030111)	BBOF1 (ENSPPAG00000034088)	ENSPPAG00000028641	ENTPD5 (ENSPPAG00000029076)	COQ6 (ENSPPAG00000037999)	FAM161B (ENSPPAG00000036655)	ZNF410 (ENSPPAG00000038897)	PTGR2 (ENSPPAG00000043789)	ENSPPAG00000010721	MIDEAS (ENSPPAG00000043022)	PNMA1 (ENSPPAG00000016978) ##9	DNAL1 (ENSPPAG00000038940)	ENSPPAG00000012443
Chimpanzee	MODERN SPECIES	5	MLH3 (ENSPTRG00000006548)	EIF2B2 (ENSPTRG00000006547)	PGF (ENSPTRG00000006545)	RPS6KL1 (ENSPTRG00000024146)	DLST (ENSPTRG00000006543)	PROX2 (ENSPTRG00000006542)	YLPM1 (ENSPTRG00000006541)	FCF1 (ENSPTRG00000006540)	AREL1 (ENSPTRG00000006539)	LTBP2 (ENSPTRG00000006538)	ISCA2 (ENSPTRG00000006536)	ENSPTRG00000045441	NPC2 (ENSPTRG00000006535)	SYNDIG1L (ENSPTRG00000006534)	VRTN (ENSPTRG00000030698)	ABCD4 (ENSPTRG00000006533) ##22	VSX2 (ENSPTRG00000006532)	LIN52 (ENSPTRG00000030700)	ENSPTRG00000041719	ALDH6A1 (ENSPTRG00000006531)	BBOF1 (ENSPTRG00000006530)	ENSPTRG00000043054	ENTPD5 (ENSPTRG00000006528)	COQ6 (ENSPTRG00000006527)	FAM161B (ENSPTRG00000006526)	ZNF410 (ENSPTRG00000006525)	PTGR2 (ENSPTRG00000006524)	MIDEAS (ENSPTRG00000006523)	PNMA1 (ENSPTRG00000006521) ##9	DNAL1 (ENSPTRG00000006520)	ACOT6 (ENSPTRG00000030702)
Human	MODERN SPECIES	5	ACYP1 (ENSG00000119640)	MLH3 (ENSG00000119684)	EIF2B2 (ENSG00000119718)	PGF (ENSG00000119630)	RPS6KL1 (ENSG00000198208)	DLST (ENSG00000119689)	PROX2 (ENSG00000119608)	YLPM1 (ENSG00000119596)	FCF1 (ENSG00000119616)	AREL1 (ENSG00000119682)	LTBP2 (ENSG00000119681)	ISCA2 (ENSG00000165898)	NPC2 (ENSG00000119655)	SYNDIG1L (ENSG00000183379)	VRTN (ENSG00000133980)	ABCD4 (ENSG00000119688) ##22	VSX2 (ENSG00000119614)	LIN52 (ENSG00000205659)	ALDH6A1 (ENSG00000119711)	BBOF1 (ENSG00000119636)	ENTPD5 (ENSG00000187097)	COQ6 (ENSG00000119723)	FAM161B (ENSG00000156050)	ZNF410 (ENSG00000119725)	PTGR2 (ENSG00000140043)	MIDEAS (ENSG00000156030)	PNMA1 (ENSG00000176903) ##9	DNAL1 (ENSG00000119661)	ACOT6 (ENSG00000205669)	ACOT4 (ENSG00000177465)	ACOT2 (ENSG00000119673)
Gorilla	MODERN SPECIES	5	EIF2B2 (ENSGGOG00000000514)	ENSGGOG00000014737	RPS6KL1 (ENSGGOG00000011607)	DLST (ENSGGOG00000011591)	PROX2 (ENSGGOG00000022893)	YLPM1 (ENSGGOG00000014195)	ENSGGOG00000016318	AREL1 (ENSGGOG00000008612)	ENSGGOG00000037625	LTBP2 (ENSGGOG00000012899)	ISCA2 (ENSGGOG00000027499)	ENSGGOG00000036134	ENSGGOG00000012886	SYNDIG1L (ENSGGOG00000008787)	VRTN (ENSGGOG00000000437)	ABCD4 (ENSGGOG00000002587) ##22	VSX2 (ENSGGOG00000002583)	ENSGGOG00000038348	ENSGGOG00000022958	ALDH6A1 (ENSGGOG00000009060)	BBOF1 (ENSGGOG00000009049)	ENTPD5 (ENSGGOG00000014368)	COQ6 (ENSGGOG00000014355)	FAM161B (ENSGGOG00000014345)	ZNF410 (ENSGGOG00000000715)	PTGR2 (ENSGGOG00000015300)	ENSGGOG00000040793	MIDEAS (ENSGGOG00000006163)	PNMA1 (ENSGGOG00000006159) ##9	DNAL1 (ENSGGOG00000015989)	ACOT6 (ENSGGOG00000014111)
Orangutan	MODERN SPECIES	5	ENSPPYG00000033140	MLH3 (ENSPPYG00000005997)	EIF2B2 (ENSPPYG00000005996)	ENSPPYG00000005995	RPS6KL1 (ENSPPYG00000005994)	DLST (ENSPPYG00000005993)	ENSPPYG00000005992	YLPM1 (ENSPPYG00000029595)	FCF1 (ENSPPYG00000005991)	AREL1 (ENSPPYG00000005990)	LTBP2 (ENSPPYG00000005989)	ISCA2 (ENSPPYG00000005988)	ENSPPYG00000005987	SYNDIG1L (ENSPPYG00000005986)	VRTN (ENSPPYG00000005985)	ABCD4 (ENSPPYG00000005983) ##22	VSX2 (ENSPPYG00000005982)	LIN52 (ENSPPYG00000032254)	ALDH6A1 (ENSPPYG00000005980)	BBOF1 (ENSPPYG00000005979)	ENTPD5 (ENSPPYG00000030358)	ENSPPYG00000005978	FAM161B (ENSPPYG00000038071)	ZNF410 (ENSPPYG00000037257)	PTGR2 (ENSPPYG00000005976)	MIDEAS (ENSPPYG00000005975)	PNMA1 (ENSPPYG00000005974) ##9	DNAL1 (ENSPPYG00000005973)	ENSPPYG00000029646	ACOT4 (ENSPPYG00000029617)	ENSPPYG00000005971
Gibbon	MODERN SPECIES	14	MLH3 (ENSNLEG00000016412)	EIF2B2 (ENSNLEG00000016383)	ENSNLEG00000016375	RPS6KL1 (ENSNLEG00000016363)	DLST (ENSNLEG00000016330)	PROX2 (ENSNLEG00000016325)	YLPM1 (ENSNLEG00000016312)	ENSNLEG00000016311	AREL1 (ENSNLEG00000016294)	LTBP2 (ENSNLEG00000016271)	ENSNLEG00000016269	ISCA2 (ENSNLEG00000016268)	ENSNLEG00000033895	ENSNLEG00000032793	SYNDIG1L (ENSNLEG00000016258)	ABCD4 (ENSNLEG00000016217) ##22	VSX2 (ENSNLEG00000016214)	LIN52 (ENSNLEG00000016207)	ALDH6A1 (ENSNLEG00000016181)	BBOF1 (ENSNLEG00000016175)	ENTPD5 (ENSNLEG00000016159)	COQ6 (ENSNLEG00000016122)	FAM161B (ENSNLEG00000016114)	ZNF410 (ENSNLEG00000016090)	PTGR2 (ENSNLEG00000016076)	MIDEAS (ENSNLEG00000016069)	ENSNLEG00000033162	PNMA1 (ENSNLEG00000016068) ##9	DNAL1 (ENSNLEG00000016062)	ENSNLEG00000030750	ACOT4 (ENSNLEG00000016052)
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00390000000227.g.a	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00900000143785	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Rhinopithecus	ANCESTRAL SPECIES	42	ENSGT00390000011103.B.i	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00900000143785	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Golden snub-nosed monkey	MODERN SPECIES	2365	MLH3 (ENSRROG00000029699)	EIF2B2 (ENSRROG00000042761)	PGF (ENSRROG00000034324)	RPS6KL1 (ENSRROG00000033229)	DLST (ENSRROG00000045190)	PROX2 (ENSRROG00000033966)	YLPM1 (ENSRROG00000039845)	ENSRROG00000037201	AREL1 (ENSRROG00000031099)	ENSRROG00000045039	LTBP2 (ENSRROG00000036111)	ISCA2 (ENSRROG00000030258)	NPC2 (ENSRROG00000037959)	SYNDIG1L (ENSRROG00000041128)	VRTN (ENSRROG00000010435)	ABCD4 (ENSRROG00000036607) ##22	VSX2 (ENSRROG00000035399)	LIN52 (ENSRROG00000038659)	ALDH6A1 (ENSRROG00000035589)	BBOF1 (ENSRROG00000039245)	ENTPD5 (ENSRROG00000041922)	COQ6 (ENSRROG00000045708)	ENSRROG00000035842	ZNF410 (ENSRROG00000031456)	PTGR2 (ENSRROG00000034050)	ENSRROG00000041797	MIDEAS (ENSRROG00000042693)	PNMA1 (ENSRROG00000018099) ##9	DNAL1 (ENSRROG00000028552)	ACOT6 (ENSRROG00000041609)	ACOT4 (ENSRROG00000035674)
Black snub-nosed monkey	MODERN SPECIES	656	ENSRBIG00000028316	MLH3 (ENSRBIG00000031546)	EIF2B2 (ENSRBIG00000040243)	PGF (ENSRBIG00000031738)	RPS6KL1 (ENSRBIG00000040806)	DLST (ENSRBIG00000044815)	PROX2 (ENSRBIG00000034329)	YLPM1 (ENSRBIG00000042494)	ENSRBIG00000035012	AREL1 (ENSRBIG00000042880)	LTBP2 (ENSRBIG00000029959)	ISCA2 (ENSRBIG00000038871)	NPC2 (ENSRBIG00000030802)	SYNDIG1L (ENSRBIG00000032309)	VRTN (ENSRBIG00000024397)	ABCD4 (ENSRBIG00000031434) ##22	VSX2 (ENSRBIG00000030815)	LIN52 (ENSRBIG00000040121)	ALDH6A1 (ENSRBIG00000034701)	BBOF1 (ENSRBIG00000031361)	ENTPD5 (ENSRBIG00000032979)	COQ6 (ENSRBIG00000039056)	FAM161B (ENSRBIG00000036131)	ZNF410 (ENSRBIG00000029693)	PTGR2 (ENSRBIG00000036431)	ENSRBIG00000032893	MIDEAS (ENSRBIG00000036636)	PNMA1 (ENSRBIG00000018022) ##9	DNAL1 (ENSRBIG00000037570)	ACOT6 (ENSRBIG00000031474)
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00390000000227.g.a.d	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00900000143785	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Vervet Monkey	MODERN SPECIES	16	ZC2HC1C (ENSCSAG00000012169)	ENSCSAG00000012173	MLH3 (ENSCSAG00000012181)	EIF2B2 (ENSCSAG00000012187)	PGF (ENSCSAG00000012223)	RPS6KL1 (ENSCSAG00000012263)	DLST (ENSCSAG00000012278)	PROX2 (ENSCSAG00000012283)	YLPM1 (ENSCSAG00000012291)	AREL1 (ENSCSAG00000012298)	LTBP2 (ENSCSAG00000012456)	ISCA2 (ENSCSAG00000012521)	NPC2 (ENSCSAG00000012527)	SYNDIG1L (ENSCSAG00000012533)	VRTN (ENSCSAG00000019573)	ABCD4 (ENSCSAG00000012543) ##22	VSX2 (ENSCSAG00000012566)	LIN52 (ENSCSAG00000012576)	ALDH6A1 (ENSCSAG00000012592)	BBOF1 (ENSCSAG00000012603)	ENTPD5 (ENSCSAG00000012613)	COQ6 (ENSCSAG00000012631)	FAM161B (ENSCSAG00000012650)	ZNF410 (ENSCSAG00000012661)	PTGR2 (ENSCSAG00000012670)	MIDEAS (ENSCSAG00000012679)	PNMA1 (ENSCSAG00000019572) ##9	DNAL1 (ENSCSAG00000012693)	ENSCSAG00000019571	ACOT4 (ENSCSAG00000012700)	ENSCSAG00000012717
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00390000000227.g.a.d	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000017443.s.a.a	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00900000143785	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b
Macaca	ANCESTRAL SPECIES	1	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00390000000227.g.a.d	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000017443.s.a.a	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT01100000263539.b.a.a.a.b.b.a.b.a.a.a.b.a.a.b.a.a	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000017443.s.a.a	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT00940000153052.c.b.a.a.a.a.a.b
Crab-eating macaque	MODERN SPECIES	17	EIF2B2 (ENSMFAG00000043749)	PGF (ENSMFAG00000044494)	RPS6KL1 (ENSMFAG00000037597)	DLST (ENSMFAG00000030177)	PROX2 (ENSMFAG00000032039)	YLPM1 (ENSMFAG00000034471)	ENSMFAG00000050358	FCF1 (ENSMFAG00000043357)	AREL1 (ENSMFAG00000034133)	LTBP2 (ENSMFAG00000039527)	ISCA2 (ENSMFAG00000049400)	NPC2 (ENSMFAG00000035734)	SYNDIG1L (ENSMFAG00000039919)	VRTN (ENSMFAG00000011666)	ENSMFAG00000056780	ABCD4 (ENSMFAG00000031273) ##22	ENSMFAG00000050925	VSX2 (ENSMFAG00000050163)	ENSMFAG00000058590	LIN52 (ENSMFAG00000062510)	ALDH6A1 (ENSMFAG00000039673)	BBOF1 (ENSMFAG00000037820)	ENTPD5 (ENSMFAG00000001083)	COQ6 (ENSMFAG00000046089)	FAM161B (ENSMFAG00000038086)	ZNF410 (ENSMFAG00000000428)	PTGR2 (ENSMFAG00000045904)	MIDEAS (ENSMFAG00000034140)	ENSMFAG00000063574	PNMA1 (ENSMFAG00000007972) ##9	DNAL1 (ENSMFAG00000035392)
Rhesus	MODERN SPECIES	17	ZC2HC1C (ENSMMUG00000015165)	MLH3 (ENSMMUG00000002911)	EIF2B2 (ENSMMUG00000002910)	PGF (ENSMMUG00000002909)	RPS6KL1 (ENSMMUG00000004263)	DLST (ENSMMUG00000004260)	PROX2 (ENSMMUG00000004259)	YLPM1 (ENSMMUG00000004255)	ENSMMUG00000056376	FCF1 (ENSMMUG00000008887)	LTBP2 (ENSMMUG00000018015)	ISCA2 (ENSMMUG00000050430)	NPC2 (ENSMMUG00000006563)	SYNDIG1L (ENSMMUG00000038996)	VRTN (ENSMMUG00000012383)	ABCD4 (ENSMMUG00000004041) ##22	VSX2 (ENSMMUG00000029272)	LIN52 (ENSMMUG00000052506)	ALDH6A1 (ENSMMUG00000012684)	BBOF1 (ENSMMUG00000012683)	COQ6 (ENSMMUG00000011148)	FAM161B (ENSMMUG00000029273)	ZNF410 (ENSMMUG00000011144)	PTGR2 (ENSMMUG00000018146)	MIDEAS (ENSMMUG00000004913)	PNMA1 (ENSMMUG00000004911) ##9	DNAL1 (ENSMMUG00000004910)	ENSMMUG00000006855	ENSMMUG00000049894	ENSMMUG00000053481	RIOX1 (ENSMMUG00000000315)
Pig-tailed macaque	MODERN SPECIES	225	MLH3 (ENSMNEG00000032615)	EIF2B2 (ENSMNEG00000034034)	PGF (ENSMNEG00000030055)	RPS6KL1 (ENSMNEG00000043637)	DLST (ENSMNEG00000035472)	ENSMNEG00000037226	PROX2 (ENSMNEG00000034494)	YLPM1 (ENSMNEG00000036638)	ENSMNEG00000033468	AREL1 (ENSMNEG00000031507)	LTBP2 (ENSMNEG00000036133)	ISCA2 (ENSMNEG00000036042)	NPC2 (ENSMNEG00000040141)	SYNDIG1L (ENSMNEG00000028619)	VRTN (ENSMNEG00000001103)	ABCD4 (ENSMNEG00000039159) ##22	VSX2 (ENSMNEG00000041246)	LIN52 (ENSMNEG00000044208)	ALDH6A1 (ENSMNEG00000030097)	BBOF1 (ENSMNEG00000019451)	ENSMNEG00000027624	ENTPD5 (ENSMNEG00000040538)	COQ6 (ENSMNEG00000036778)	FAM161B (ENSMNEG00000012575)	ZNF410 (ENSMNEG00000029329)	PTGR2 (ENSMNEG00000019952)	MIDEAS (ENSMNEG00000040771)	ENSMNEG00000041241
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00390000000227.g.a.d	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000017443.s.a.a	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00900000143785	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b
Cercopithecinae_d	ANCESTRAL SPECIES	11	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00390000000227.g.a.d	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000017443.s.a.a	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000164709.a.b.b.a.a.b.b.b.a.a.a.b.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00900000143785	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904
Drill	MODERN SPECIES	827	MLH3 (ENSMLEG00000009239)	EIF2B2 (ENSMLEG00000041601)	PGF (ENSMLEG00000028938)	RPS6KL1 (ENSMLEG00000037049)	DLST (ENSMLEG00000037511)	ENSMLEG00000031552	PROX2 (ENSMLEG00000044172)	YLPM1 (ENSMLEG00000041226)	ENSMLEG00000043413	AREL1 (ENSMLEG00000017085)	LTBP2 (ENSMLEG00000036452)	ISCA2 (ENSMLEG00000031882)	NPC2 (ENSMLEG00000043459)	SYNDIG1L (ENSMLEG00000034438)	VRTN (ENSMLEG00000011469)	ABCD4 (ENSMLEG00000041560) ##22	VSX2 (ENSMLEG00000003115)	LIN52 (ENSMLEG00000032006)	ALDH6A1 (ENSMLEG00000041110)	ENSMLEG00000040250	BBOF1 (ENSMLEG00000030984)	ENTPD5 (ENSMLEG00000029960)	COQ6 (ENSMLEG00000044044)	FAM161B (ENSMLEG00000029761)	ZNF410 (ENSMLEG00000034194)	PTGR2 (ENSMLEG00000040135)	ENSMLEG00000034566	MIDEAS (ENSMLEG00000013306)	PNMA1 (ENSMLEG00000015269) ##9
Sooty mangabey	MODERN SPECIES	165	ENSCATG00000044270	MLH3 (ENSCATG00000037886)	EIF2B2 (ENSCATG00000044945)	PGF (ENSCATG00000021773)	RPS6KL1 (ENSCATG00000030155)	DLST (ENSCATG00000021002)	PROX2 (ENSCATG00000005114)	YLPM1 (ENSCATG00000029765)	ENSCATG00000038174	AREL1 (ENSCATG00000024599)	LTBP2 (ENSCATG00000037020)	ISCA2 (ENSCATG00000039296)	NPC2 (ENSCATG00000034248)	SYNDIG1L (ENSCATG00000034933)	VRTN (ENSCATG00000016010)	ABCD4 (ENSCATG00000044007) ##22	VSX2 (ENSCATG00000042328)	ENSCATG00000031234	LIN52 (ENSCATG00000030477)	ENSCATG00000008507	ALDH6A1 (ENSCATG00000020482)	BBOF1 (ENSCATG00000038044)	ENTPD5 (ENSCATG00000038005)	COQ6 (ENSCATG00000017691)	FAM161B (ENSCATG00000044961)	ZNF410 (ENSCATG00000041121)	PTGR2 (ENSCATG00000041307)	MIDEAS (ENSCATG00000034640)	PNMA1 (ENSCATG00000015246) ##9	DNAL1 (ENSCATG00000031825)	ENSCATG00000031050
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES	17	MLH3 (ENSPANG00000016738)	EIF2B2 (ENSPANG00000006825)	PGF (ENSPANG00000017556)	RPS6KL1 (ENSPANG00000016739)	DLST (ENSPANG00000024086)	PROX2 (ENSPANG00000024084)	YLPM1 (ENSPANG00000006982)	FCF1 (ENSPANG00000013437)	AREL1 (ENSPANG00000018774)	LTBP2 (ENSPANG00000012340)	ISCA2 (ENSPANG00000006983)	NPC2 (ENSPANG00000013438)	SYNDIG1L (ENSPANG00000001022)	VRTN (ENSPANG00000012341)	ABCD4 (ENSPANG00000007033) ##22	ENSPANG00000042755 ##22	VSX2 (ENSPANG00000012707)	ENSPANG00000038524	LIN52 (ENSPANG00000000642)	ALDH6A1 (ENSPANG00000000641)	BBOF1 (ENSPANG00000009281)	ENTPD5 (ENSPANG00000024304)	COQ6 (ENSPANG00000022438)	FAM161B (ENSPANG00000018775)	ZNF410 (ENSPANG00000013439)	PTGR2 (ENSPANG00000015767)	ENSPANG00000029412	ENSPANG00000015765	PNMA1 (ENSPANG00000003663) ##9	DNAL1 (ENSPANG00000015764)	ENSPANG00000031897
Olive baboon	MODERN SPECIES	17	ENSPANG00000006824	MLH3 (ENSPANG00000016738)	EIF2B2 (ENSPANG00000006825)	PGF (ENSPANG00000017556)	RPS6KL1 (ENSPANG00000016739)	DLST (ENSPANG00000024086)	PROX2 (ENSPANG00000024084)	YLPM1 (ENSPANG00000006982)	FCF1 (ENSPANG00000013437)	AREL1 (ENSPANG00000018774)	LTBP2 (ENSPANG00000012340)	ISCA2 (ENSPANG00000006983)	NPC2 (ENSPANG00000013438)	SYNDIG1L (ENSPANG00000001022)	VRTN (ENSPANG00000012341)	ABCD4 (ENSPANG00000007033) ##22	ENSPANG00000042755 ##22	VSX2 (ENSPANG00000012707)	ENSPANG00000038524	LIN52 (ENSPANG00000000642)	ALDH6A1 (ENSPANG00000000641)	BBOF1 (ENSPANG00000009281)	ENTPD5 (ENSPANG00000024304)	COQ6 (ENSPANG00000022438)	FAM161B (ENSPANG00000018775)	ZNF410 (ENSPANG00000013439)	PTGR2 (ENSPANG00000015767)	ENSPANG00000029412	ENSPANG00000015765	PNMA1 (ENSPANG00000003663) ##9	DNAL1 (ENSPANG00000015764)
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Bushbaby	MODERN SPECIES	135	ENSOGAG00000029028	MLH3 (ENSOGAG00000008240)	EIF2B2 (ENSOGAG00000008234)	PGF (ENSOGAG00000008229)	RPS6KL1 (ENSOGAG00000001332)	DLST (ENSOGAG00000027931)	PROX2 (ENSOGAG00000001327)	YLPM1 (ENSOGAG00000001323)	ENSOGAG00000002711	AREL1 (ENSOGAG00000002706)	LTBP2 (ENSOGAG00000002703)	ISCA2 (ENSOGAG00000002698)	NPC2 (ENSOGAG00000002697)	SYNDIG1L (ENSOGAG00000030617)	VRTN (ENSOGAG00000024981)	ABCD4 (ENSOGAG00000013557) ##22	VSX2 (ENSOGAG00000013552)	LIN52 (ENSOGAG00000003009)	ALDH6A1 (ENSOGAG00000003006)	ENTPD5 (ENSOGAG00000006408)	COQ6 (ENSOGAG00000006406)	FAM161B (ENSOGAG00000006404)	ZNF410 (ENSOGAG00000025936)	PTGR2 (ENSOGAG00000014524)	MIDEAS (ENSOGAG00000004053)	PNMA1 (ENSOGAG00000004052) ##9	DNAL1 (ENSOGAG00000032854)	ACOT6 (ENSOGAG00000003958)	ACOT4 (ENSOGAG00000032824)	RIOX1 (ENSOGAG00000027192)
Lemuriformes	ANCESTRAL SPECIES	28	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014.n	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Mouse lemur	MODERN SPECIES	22	ZC2HC1C (ENSMICG00000015986)	ENSMICG00000026687	MLH3 (ENSMICG00000037718)	EIF2B2 (ENSMICG00000006100)	PGF (ENSMICG00000006094)	RPS6KL1 (ENSMICG00000006086)	DLST (ENSMICG00000006080)	ENSMICG00000006078	YLPM1 (ENSMICG00000006067)	ENSMICG00000006061	AREL1 (ENSMICG00000006054)	LTBP2 (ENSMICG00000006026)	ISCA2 (ENSMICG00000043470)	NPC2 (ENSMICG00000006008)	SYNDIG1L (ENSMICG00000027038)	ABCD4 (ENSMICG00000008482) ##22	VSX2 (ENSMICG00000037778)	LIN52 (ENSMICG00000008474)	ALDH6A1 (ENSMICG00000008467)	BBOF1 (ENSMICG00000008464)	ENSMICG00000033736	ENTPD5 (ENSMICG00000003012)	COQ6 (ENSMICG00000003007)	FAM161B (ENSMICG00000002998)	ZNF410 (ENSMICG00000002992)	PTGR2 (ENSMICG00000029962)	MIDEAS (ENSMICG00000002805)	PNMA1 (ENSMICG00000002795) ##9	DNAL1 (ENSMICG00000032196)	ACOT6 (ENSMICG00000033023)	ENSMICG00000036692
Lemuriformes_a	ANCESTRAL SPECIES	11	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014.n	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Coquerels sifaka	MODERN SPECIES	653	ZC2HC1C (ENSPCOG00000017757)	ACYP1 (ENSPCOG00000028631)	MLH3 (ENSPCOG00000002921)	EIF2B2 (ENSPCOG00000016320)	PGF (ENSPCOG00000016435)	RPS6KL1 (ENSPCOG00000026169)	ENSPCOG00000023446	PROX2 (ENSPCOG00000016556)	YLPM1 (ENSPCOG00000015405)	FCF1 (ENSPCOG00000012922)	AREL1 (ENSPCOG00000025544)	LTBP2 (ENSPCOG00000026819)	ISCA2 (ENSPCOG00000018511)	NPC2 (ENSPCOG00000023731)	SYNDIG1L (ENSPCOG00000019267)	ABCD4 (ENSPCOG00000013720) ##22	VSX2 (ENSPCOG00000020252)	LIN52 (ENSPCOG00000002646)	ALDH6A1 (ENSPCOG00000023367)	BBOF1 (ENSPCOG00000009977)	ENTPD5 (ENSPCOG00000019244)	COQ6 (ENSPCOG00000023336)	FAM161B (ENSPCOG00000002979)	ZNF410 (ENSPCOG00000021079)	PTGR2 (ENSPCOG00000023980)	MIDEAS (ENSPCOG00000022588)	PNMA1 (ENSPCOG00000013444) ##9	DNAL1 (ENSPCOG00000025043)	ENSPCOG00000020943	ENSPCOG00000020459	ACOT4 (ENSPCOG00000026670)
Greater bamboo lemur	MODERN SPECIES	1128								ENSPSMG00000018110	AREL1 (ENSPSMG00000018096)	ENSPSMG00000018070	LTBP2 (ENSPSMG00000018034)	ISCA2 (ENSPSMG00000017853)	NPC2 (ENSPSMG00000017829)	SYNDIG1L (ENSPSMG00000017823)	VRTN (ENSPSMG00000017820)	ABCD4 (ENSPSMG00000017808) ##22	VSX2 (ENSPSMG00000017773)	LIN52 (ENSPSMG00000017765)	ALDH6A1 (ENSPSMG00000017740)	BBOF1 (ENSPSMG00000017703)	ENTPD5 (ENSPSMG00000017675)	COQ6 (ENSPSMG00000017654)	FAM161B (ENSPSMG00000017628)	ZNF410 (ENSPSMG00000017421)	PTGR2 (ENSPSMG00000017248)	MIDEAS (ENSPSMG00000017214)	PNMA1 (ENSPSMG00000017192) ##9
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Tree shrew	MODERN SPECIES	820																ABCD4 (ENSTBEG00000009457) ##22	VSX2 (ENSTBEG00000009134)
Glires	ANCESTRAL SPECIES	12	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a
Lagomorpha	ANCESTRAL SPECIES	25	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.a.a	ENSGT00390000013207	ENSGT00390000000083.a	ENSGT00940000156005
Pika	MODERN SPECIES	1660															ENSOPRG00000004716	ABCD4 (ENSOPRG00000004659) ##22	VSX2 (ENSOPRG00000004633)	LIN52 (ENSOPRG00000004622)	ALDH6A1 (ENSOPRG00000004594)	ENSOPRG00000004579
Rabbit	MODERN SPECIES	12	MLH3 (ENSOCUG00000010182)	EIF2B2 (ENSOCUG00000010175)	PGF (ENSOCUG00000026354)	RPS6KL1 (ENSOCUG00000013819)	DLST (ENSOCUG00000015606)	PROX2 (ENSOCUG00000021246)	YLPM1 (ENSOCUG00000008083)	ENSOCUG00000014120	AREL1 (ENSOCUG00000014107)	LTBP2 (ENSOCUG00000014077)	ISCA2 (ENSOCUG00000014072)	NPC2 (ENSOCUG00000014067)	ENSOCUG00000035144	SYNDIG1L (ENSOCUG00000015989)	VRTN (ENSOCUG00000027081)	ABCD4 (ENSOCUG00000003484) ##22	VSX2 (ENSOCUG00000017496)	LIN52 (ENSOCUG00000017491)	ALDH6A1 (ENSOCUG00000025121)	BBOF1 (ENSOCUG00000017487)	ENSOCUG00000006803	COQ6 (ENSOCUG00000006799)	FAM161B (ENSOCUG00000006791)	ZNF410 (ENSOCUG00000006787)	PTGR2 (ENSOCUG00000006785)	MIDEAS (ENSOCUG00000007290)	DNAL1 (ENSOCUG00000007284)	ENSOCUG00000029229	ENSOCUG00000022543	ENSOCUG00000030890	HEATR4 (ENSOCUG00000005994)
Rodentia	ANCESTRAL SPECIES	3	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000016292.g.a.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000016292.g.a.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402.f	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a.c.b
Marmotini	ANCESTRAL SPECIES	27	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402.f	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a.c.b.n
Marmotini_b	ANCESTRAL SPECIES	31	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402.f	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a.c.b.n
Arctic ground squirrel	MODERN SPECIES	8	MLH3 (ENSUPAG00010014100)	EIF2B2 (ENSUPAG00010014118)	PGF (ENSUPAG00010014126)	RPS6KL1 (ENSUPAG00010014140)	DLST (ENSUPAG00010014158)	PROX2 (ENSUPAG00010014197)	YLPM1 (ENSUPAG00010014207)	ENSUPAG00010014237	AREL1 (ENSUPAG00010014265)	ENSUPAG00010014316	LTBP2 (ENSUPAG00010014320)	ISCA2 (ENSUPAG00010014470)	NPC2 (ENSUPAG00010014477)	SYNDIG1L (ENSUPAG00010014486)	VRTN (ENSUPAG00010014491)	ABCD4 (ENSUPAG00010014503) ##22	VSX2 (ENSUPAG00010014562)	LIN52 (ENSUPAG00010014569)	ALDH6A1 (ENSUPAG00010014582)	BBOF1 (ENSUPAG00010014608)	ENTPD5 (ENSUPAG00010014644)	COQ6 (ENSUPAG00010014809)	FAM161B (ENSUPAG00010014838)	ZNF410 (ENSUPAG00010014867)	PTGR2 (ENSUPAG00010014963)	ENSUPAG00010014987	MIDEAS (ENSUPAG00010014994)	PNMA1 (ENSUPAG00010015061) ##9	DNAL1 (ENSUPAG00010015067)	ACOT6 (ENSUPAG00010015106)	ACOT4 (ENSUPAG00010015117)
Squirrel	MODERN SPECIES	88	MLH3 (ENSSTOG00000027479)	EIF2B2 (ENSSTOG00000007283)	PGF (ENSSTOG00000023041)	RPS6KL1 (ENSSTOG00000014613)	DLST (ENSSTOG00000014603)	PROX2 (ENSSTOG00000023253)	YLPM1 (ENSSTOG00000014581)	FCF1 (ENSSTOG00000008083)	AREL1 (ENSSTOG00000008036)	ENSSTOG00000034311	LTBP2 (ENSSTOG00000007996)	ISCA2 (ENSSTOG00000020219)	NPC2 (ENSSTOG00000007987)	SYNDIG1L (ENSSTOG00000007981)	VRTN (ENSSTOG00000021434)	ABCD4 (ENSSTOG00000009827) ##22	VSX2 (ENSSTOG00000008114)	LIN52 (ENSSTOG00000029773)	ALDH6A1 (ENSSTOG00000028534)	ENSSTOG00000008087	ENTPD5 (ENSSTOG00000008069)	COQ6 (ENSSTOG00000016439)	FAM161B (ENSSTOG00000029202)	ZNF410 (ENSSTOG00000024235)	PTGR2 (ENSSTOG00000008590)	MIDEAS (ENSSTOG00000000423)	PNMA1 (ENSSTOG00000000422) ##9	ENSSTOG00000029464	DNAL1 (ENSSTOG00000000420)	ACOT6 (ENSSTOG00000003091)	ACOT4 (ENSSTOG00000003338)
Alpin marmot	MODERN SPECIES	1	MLH3 (ENSMMMG00000018877)	EIF2B2 (ENSMMMG00000018871)	ENSMMMG00000018834	RPS6KL1 (ENSMMMG00000018824)	DLST (ENSMMMG00000018811)	PROX2 (ENSMMMG00000018802)	ENSMMMG00000018793	YLPM1 (ENSMMMG00000016573)	FCF1 (ENSMMMG00000016553)	AREL1 (ENSMMMG00000016543)	LTBP2 (ENSMMMG00000016333)	ISCA2 (ENSMMMG00000016320)	NPC2 (ENSMMMG00000016316)	SYNDIG1L (ENSMMMG00000016305)	VRTN (ENSMMMG00000016304)	ABCD4 (ENSMMMG00000016264) ##22	VSX2 (ENSMMMG00000016247)	LIN52 (ENSMMMG00000016244)	ALDH6A1 (ENSMMMG00000016229)	BBOF1 (ENSMMMG00000016213)	ENTPD5 (ENSMMMG00000016134)	COQ6 (ENSMMMG00000016120)	FAM161B (ENSMMMG00000016102)	ZNF410 (ENSMMMG00000016081)	ENSMMMG00000016079	PTGR2 (ENSMMMG00000016067)	MIDEAS (ENSMMMG00000016040)	PNMA1 (ENSMMMG00000016038) ##9	DNAL1 (ENSMMMG00000016024)	ENSMMMG00000016020	ENSMMMG00000015998
Eurasian red squirrel	MODERN SPECIES	11	MLH3 (ENSSVLG00005023158)	EIF2B2 (ENSSVLG00005023236)	PGF (ENSSVLG00005023268)	RPS6KL1 (ENSSVLG00005023325)	DLST (ENSSVLG00005023360)	ENSSVLG00005023416	YLPM1 (ENSSVLG00005023475)	FCF1 (ENSSVLG00005023579)	AREL1 (ENSSVLG00005023654)	ENSSVLG00005023700	LTBP2 (ENSSVLG00005023777)	ISCA2 (ENSSVLG00005005331)	NPC2 (ENSSVLG00005005374)	SYNDIG1L (ENSSVLG00005005404)	VRTN (ENSSVLG00005005435)	ABCD4 (ENSSVLG00005005450) ##22	VSX2 (ENSSVLG00005005496)	ENSSVLG00005005534	ENSSVLG00005005569	ALDH6A1 (ENSSVLG00005005600)	BBOF1 (ENSSVLG00005005756)	ENTPD5 (ENSSVLG00005005845)	COQ6 (ENSSVLG00005006026)	FAM161B (ENSSVLG00005006140)	ZNF410 (ENSSVLG00005006231)	PTGR2 (ENSSVLG00005006327)	MIDEAS (ENSSVLG00005006379)	PNMA1 (ENSSVLG00005006415) ##9	DNAL1 (ENSSVLG00005006438)	ENSSVLG00005006522	ACOT4 (ENSSVLG00005006548)
Hystricomorpha	ANCESTRAL SPECIES	33	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000016292.g.a.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Naked mole-rat female	MODERN SPECIES	18	ENSHGLG00000050804	ENSHGLG00000018678	ENSHGLG00000013243	RPS6KL1 (ENSHGLG00000013483)	DLST (ENSHGLG00000009814)	PROX2 (ENSHGLG00000011710)	ENSHGLG00000046547	YLPM1 (ENSHGLG00000018654)	ENSHGLG00000017869	AREL1 (ENSHGLG00000018582)	ENSHGLG00000047171	LTBP2 (ENSHGLG00000015861)	ISCA2 (ENSHGLG00000049377)	NPC2 (ENSHGLG00000013107)	SYNDIG1L (ENSHGLG00000013920)	ABCD4 (ENSHGLG00000019040) ##22	VSX2 (ENSHGLG00000010609)	LIN52 (ENSHGLG00000045214)	ALDH6A1 (ENSHGLG00000008121)	ENSHGLG00000045022	ENTPD5 (ENSHGLG00000044767)	COQ6 (ENSHGLG00000006532)	FAM161B (ENSHGLG00000007604)	ZNF410 (ENSHGLG00000008562)	PTGR2 (ENSHGLG00000009670)	MIDEAS (ENSHGLG00000012075)	PNMA1 (ENSHGLG00000050390) ##9	DNAL1 (ENSHGLG00000013059)	ENSHGLG00000013635	ACOT6 (ENSHGLG00000040633)	ENSHGLG00000048609
Hystricomorpha_a	ANCESTRAL SPECIES	27	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000016292.g.a.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b
Guinea pig	MODERN SPECIES	20	ENSCPOG00000036680	MLH3 (ENSCPOG00000024679)	EIF2B2 (ENSCPOG00000008155)	PGF (ENSCPOG00000038491)	RPS6KL1 (ENSCPOG00000011776)	ENSCPOG00000009316	PROX2 (ENSCPOG00000009322)	YLPM1 (ENSCPOG00000027568)	ENSCPOG00000001149	AREL1 (ENSCPOG00000001146)	LTBP2 (ENSCPOG00000001143)	ISCA2 (ENSCPOG00000035413)	NPC2 (ENSCPOG00000001141)	SYNDIG1L (ENSCPOG00000012367)	VRTN (ENSCPOG00000038635)	ABCD4 (ENSCPOG00000004776) ##22	VSX2 (ENSCPOG00000003172)	LIN52 (ENSCPOG00000003170)	ALDH6A1 (ENSCPOG00000000015)	RNF113A (ENSCPOG00000038517)	ENSCPOG00000015588	ENTPD5 (ENSCPOG00000009621)	COQ6 (ENSCPOG00000009610)	FAM161B (ENSCPOG00000040022)	ZNF410 (ENSCPOG00000009601)	PTGR2 (ENSCPOG00000027073)	MIDEAS (ENSCPOG00000010659)	PNMA1 (ENSCPOG00000010657) ##9	DNAL1 (ENSCPOG00000010655)	ACOT6 (ENSCPOG00000032534)	ACOT4 (ENSCPOG00000036993)
Hystricomorpha_b	ANCESTRAL SPECIES	46	ENSGT00390000011103.B	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.b	ENSGT01010000222336.a.a.a.ob.a.a.c.b	ENSGT00390000013207
Long-tailed chinchilla	MODERN SPECIES	230	ENSCLAG00000003079	MLH3 (ENSCLAG00000003183)	EIF2B2 (ENSCLAG00000003404)	PGF (ENSCLAG00000003475)	RPS6KL1 (ENSCLAG00000004091)	DLST (ENSCLAG00000004328)	PROX2 (ENSCLAG00000004620)	YLPM1 (ENSCLAG00000004848)	FCF1 (ENSCLAG00000005606)	AREL1 (ENSCLAG00000005714)	LTBP2 (ENSCLAG00000005951)	ISCA2 (ENSCLAG00000006410)	NPC2 (ENSCLAG00000006435)	SYNDIG1L (ENSCLAG00000006492)	VRTN (ENSCLAG00000006514)	ABCD4 (ENSCLAG00000006557) ##22	VSX2 (ENSCLAG00000006640)	LIN52 (ENSCLAG00000003236)	ALDH6A1 (ENSCLAG00000003304)	ENSCLAG00000003357	ENTPD5 (ENSCLAG00000003418)	COQ6 (ENSCLAG00000003521)	FAM161B (ENSCLAG00000003575)	ZNF410 (ENSCLAG00000003640)	PTGR2 (ENSCLAG00000003701)	MIDEAS (ENSCLAG00000003802)	DNAL1 (ENSCLAG00000003917)	ENSCLAG00000003947	ENSCLAG00000004019	ACOT4 (ENSCLAG00000004063)	ENSCLAG00000004124
Degu	MODERN SPECIES	48	ZC2HC1C (ENSODEG00000015376)	ENSODEG00000015487	ENSODEG00000015428	ENSODEG00000015442	RPS6KL1 (ENSODEG00000015734)	ENSODEG00000016718	PROX2 (ENSODEG00000015273)	YLPM1 (ENSODEG00000015362)	ENSODEG00000015318	AREL1 (ENSODEG00000015900)	LTBP2 (ENSODEG00000015966)	ENSODEG00000015593	NPC2 (ENSODEG00000015454)	SYNDIG1L (ENSODEG00000015191)	VRTN (ENSODEG00000015577)	ABCD4 (ENSODEG00000015190) ##22	VSX2 (ENSODEG00000015486)	ENSODEG00000015046	ALDH6A1 (ENSODEG00000015807)	ENSODEG00000015055	ENTPD5 (ENSODEG00000015910)	COQ6 (ENSODEG00000016014)	FAM161B (ENSODEG00000014840)	ENSODEG00000015333	ENSODEG00000015245	ENSODEG00000014976	ENSODEG00000020268	MIDEAS (ENSODEG00000015501)	ACOT6 (ENSODEG00000015420)	ENSODEG00000015224	ACOT4 (ENSODEG00000015555)
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000016292.g.a.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a
Kangaroo rat	MODERN SPECIES	321	Nek9 (ENSDORG00000004896)	Zc2hc1c (ENSDORG00000004895)	Acyp1 (ENSDORG00000029459)	ENSDORG00000004893	Pgf (ENSDORG00000029841)	Rps6kl1 (ENSDORG00000002155)	Dlst (ENSDORG00000002153)	Prox2 (ENSDORG00000027296)	Ylpm1 (ENSDORG00000016716)	Fcf1 (ENSDORG00000009970)	Arel1 (ENSDORG00000027985)	Ltbp2 (ENSDORG00000014858)	Isca2 (ENSDORG00000027372)	Syndig1l (ENSDORG00000014474)	Vrtn (ENSDORG00000010914)	Abcd4 (ENSDORG00000010912) ##22	Vsx2 (ENSDORG00000010911)	Lin52 (ENSDORG00000025156)	Aldh6a1 (ENSDORG00000005224)	ENSDORG00000005218	Rnf113a2 (ENSDORG00000027624)	ENSDORG00000001878	Coq6 (ENSDORG00000009297)	Fam161b (ENSDORG00000009295)	Zfp410 (ENSDORG00000009293)	Ptgr2 (ENSDORG00000024075)	Mideas (ENSDORG00000015681)	ENSDORG00000025611 ##9	Dnal1 (ENSDORG00000015187)	ENSDORG00000000064	ENSDORG00000013097
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000016292.g.a.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a
Lesser Egyptian jerboa	MODERN SPECIES	41	ENSJJAG00000017233	Eif2b2 (ENSJJAG00000015912)	Pgf (ENSJJAG00000017768)	Rps6kl1 (ENSJJAG00000013675)	Dlst (ENSJJAG00000016242)	Prox2 (ENSJJAG00000017786)	Ylpm1 (ENSJJAG00000017599)	Fcf1 (ENSJJAG00000015320)	Arel1 (ENSJJAG00000023937)	ENSJJAG00000011505	Ltbp2 (ENSJJAG00000016908)	Isca2 (ENSJJAG00000015802)	Npc2 (ENSJJAG00000017648)	Syndig1l (ENSJJAG00000012505)	Vrtn (ENSJJAG00000008057)	Abcd4 (ENSJJAG00000014302) ##22	Vsx2 (ENSJJAG00000011877)	ENSJJAG00000015460	Aldh6a1 (ENSJJAG00000005519)	Bbof1 (ENSJJAG00000012977)	Entpd5 (ENSJJAG00000012303)	Coq6 (ENSJJAG00000013225)	Fam161b (ENSJJAG00000010436)	Zfp410 (ENSJJAG00000011182)	Ptgr2 (ENSJJAG00000004075)	Mideas (ENSJJAG00000012181)	Pnma1 (ENSJJAG00000002278) ##9	Dnal1 (ENSJJAG00000017347)	ENSJJAG00000011596	ENSJJAG00000014618	Heatr4 (ENSJJAG00000018627)
Muroidea	ANCESTRAL SPECIES	16	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000016292.g.a.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a
Upper Galilee mountains blind mole rat	MODERN SPECIES	1502	Zc2hc1c (ENSNGAG00000019419)	Acyp1 (ENSNGAG00000007984)	Mlh3 (ENSNGAG00000014700)	Eif2b2 (ENSNGAG00000012270)	Pgf (ENSNGAG00000000539)	Rps6kl1 (ENSNGAG00000013728)	Dlst (ENSNGAG00000012679)	Prox2 (ENSNGAG00000019326)	Ylpm1 (ENSNGAG00000013855)	Fcf1 (ENSNGAG00000004711)	Arel1 (ENSNGAG00000013039)	Ltbp2 (ENSNGAG00000019830)	ENSNGAG00000001197	Npc2 (ENSNGAG00000012246)	Syndig1l (ENSNGAG00000013742)	Abcd4 (ENSNGAG00000017662) ##22	Vsx2 (ENSNGAG00000011608)	Lin52 (ENSNGAG00000014697)	Aldh6a1 (ENSNGAG00000000245)	Bbof1 (ENSNGAG00000013123)	Entpd5 (ENSNGAG00000011773)	Coq6 (ENSNGAG00000015962)	Fam161b (ENSNGAG00000016812)	Zfp410 (ENSNGAG00000000633)	Ptgr2 (ENSNGAG00000016685)	ENSNGAG00000000298	Mideas (ENSNGAG00000008541)	Pnma1 (ENSNGAG00000015203) ##9	Dnal1 (ENSNGAG00000010152)	Acot6 (ENSNGAG00000015805)	ENSNGAG00000016652
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000016292.g.a.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.g.a	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a	ENSGT01010000222336.a.a.a.ob.a.a.c.b.b
Cricetidae_B	ANCESTRAL SPECIES	18	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.g.a	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a	ENSGT01010000222336.a.a.a.ob.a.a.c.b.b
Prairie vole	MODERN SPECIES		ENSMOCG00000006235	Eif2b2 (ENSMOCG00000003698)	Pgf (ENSMOCG00000002312)	ENSMOCG00000002159	Rps6kl1 (ENSMOCG00000020851)	Dlst (ENSMOCG00000022960)	Prox2 (ENSMOCG00000019247)	Ylpm1 (ENSMOCG00000022334)	ENSMOCG00000001860	Arel1 (ENSMOCG00000014662)	Ltbp2 (ENSMOCG00000007456)	Isca2 (ENSMOCG00000000566)	Npc2 (ENSMOCG00000013949)	Syndig1l (ENSMOCG00000013518)	Vrtn (ENSMOCG00000011795)	Abcd4 (ENSMOCG00000022046) ##22	Vsx2 (ENSMOCG00000020119)	Lin52 (ENSMOCG00000017855)	Aldh6a1 (ENSMOCG00000018307)	Bbof1 (ENSMOCG00000001378)	Entpd5 (ENSMOCG00000020144)	Coq6 (ENSMOCG00000006495)	Fam161b (ENSMOCG00000001828)	Zfp410 (ENSMOCG00000017363)	Ptgr2 (ENSMOCG00000010724)	Mideas (ENSMOCG00000019740)	Pnma1 (ENSMOCG00000006996) ##9	Dnal1 (ENSMOCG00000022267)	Acot6 (ENSMOCG00000004025)	Acot5 (ENSMOCG00000000977)	ENSMOCG00000018416
Northern American deer mouse	MODERN SPECIES	5	Mlh3 (ENSPEMG00000005719)	Eif2b2 (ENSPEMG00000007004)	Pgf (ENSPEMG00000017060)	Rps6kl1 (ENSPEMG00000011503)	Dlst (ENSPEMG00000009929)	Prox2 (ENSPEMG00000020502)	Ylpm1 (ENSPEMG00000020843)	Fcf1 (ENSPEMG00000012596)	Arel1 (ENSPEMG00000020566)	ENSPEMG00000029842	Ltbp2 (ENSPEMG00000015484)	Isca2 (ENSPEMG00000028312)	Npc2 (ENSPEMG00000030688)	Syndig1l (ENSPEMG00000030499)	Vrtn (ENSPEMG00000020660)	Abcd4 (ENSPEMG00000021386) ##22	Vsx2 (ENSPEMG00000014515)	Lin52 (ENSPEMG00000016158)	Aldh6a1 (ENSPEMG00000021209)	Bbof1 (ENSPEMG00000020680)	Entpd5 (ENSPEMG00000023217)	Coq6 (ENSPEMG00000020368)	Fam161b (ENSPEMG00000021215)	Zfp410 (ENSPEMG00000022416)	Ptgr2 (ENSPEMG00000020776)	Mideas (ENSPEMG00000020623)	Pnma1 (ENSPEMG00000001767) ##9	ENSPEMG00000025553	ENSPEMG00000030670	ENSPEMG00000027213	Acot6 (ENSPEMG00000020726)
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d.g.a	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a	ENSGT01010000222336.a.a.a.ob.a.a.c.b.b
Chinese hamster chok1gshd	MODERN SPECIES	2	Eif2b2 (ENSCGRG00001019280)	Pgf (ENSCGRG00001023393)	Rps6kl1 (ENSCGRG00001024635)	Dlst (ENSCGRG00001020056)	Prox2 (ENSCGRG00001021630)	Ylpm1 (ENSCGRG00001015671)	ENSCGRG00001017796	Arel1 (ENSCGRG00001023498)	ENSCGRG00001000601	ENSCGRG00001003181	Ltbp2 (ENSCGRG00001012474)	Isca2 (ENSCGRG00001010257)	Npc2 (ENSCGRG00001012790)	Syndig1l (ENSCGRG00001013830)	Vrtn (ENSCGRG00001013127)	Abcd4 (ENSCGRG00001022187) ##22	Vsx2 (ENSCGRG00001023191)	Lin52 (ENSCGRG00001023668)	Aldh6a1 (ENSCGRG00001024154)	Bbof1 (ENSCGRG00001001301)	Entpd5 (ENSCGRG00001021581)	Coq6 (ENSCGRG00001024043)	Fam161b (ENSCGRG00001024553)	Zfp410 (ENSCGRG00001014072)	Ptgr2 (ENSCGRG00001015947)	Mideas (ENSCGRG00001021773)	Pnma1 (ENSCGRG00001010465) ##9	Dnal1 (ENSCGRG00001016988)	Acot6 (ENSCGRG00001019681)	ENSCGRG00001020145	ENSCGRG00001023275
Golden Hamster	MODERN SPECIES	835	ENSMAUG00000000844	Eif2b2 (ENSMAUG00000015945)	Pgf (ENSMAUG00000000890)	Rps6kl1 (ENSMAUG00000010833)	Dlst (ENSMAUG00000000864)	Prox2 (ENSMAUG00000008593)	Ylpm1 (ENSMAUG00000000879)	Fcf1 (ENSMAUG00000014155)	ENSMAUG00000003058	Ltbp2 (ENSMAUG00000015694)	ENSMAUG00000017408	Isca2 (ENSMAUG00000019928)	Npc2 (ENSMAUG00000020689)	Syndig1l (ENSMAUG00000013945)	ENSMAUG00000017258	Abcd4 (ENSMAUG00000011789) ##22	Vsx2 (ENSMAUG00000017695)	Lin52 (ENSMAUG00000011456)	Aldh6a1 (ENSMAUG00000016891)	Bbof1 (ENSMAUG00000012362)	Entpd5 (ENSMAUG00000014342)	Coq6 (ENSMAUG00000011130)	Fam161b (ENSMAUG00000001201)	Zfp410 (ENSMAUG00000018652)	Ptgr2 (ENSMAUG00000010550)	Mideas (ENSMAUG00000018194)	Pnma1 (ENSMAUG00000017335) ##9	Dnal1 (ENSMAUG00000017147)	Acot6 (ENSMAUG00000019222)	Acot5 (ENSMAUG00000020838)	ENSMAUG00000020834
Murinae	ANCESTRAL SPECIES	8	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000016292.g.a.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a
Mus	ANCESTRAL SPECIES	10	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000016292.g.a.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a
Mus_A	ANCESTRAL SPECIES	17	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000016292.g.a.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a
Mus_B	ANCESTRAL SPECIES	17	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000016292.g.a.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a
Mus_C	ANCESTRAL SPECIES	11	ENSGT00800000124176	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700	ENSGT00390000006223	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00390000016292.g.a.b	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00940000156793	ENSGT00940000157459	ENSGT01030000234522.C.b.e.b.a.a.a ##9	ENSGT00390000016904	ENSGT01010000222336.a.a.a.ob.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a
spretus	MODERN SPECIES	3	Mlh3 (MGP_SPRETEiJ_G0018807)	Eif2b2 (MGP_SPRETEiJ_G0018806)	Pgf (MGP_SPRETEiJ_G0018805)	Rps6kl1 (MGP_SPRETEiJ_G0018804)	Dlst (MGP_SPRETEiJ_G0018803)	Prox2 (MGP_SPRETEiJ_G0018802)	Ylpm1 (MGP_SPRETEiJ_G0018801)	Fcf1 (MGP_SPRETEiJ_G0018800)	MGP_SPRETEiJ_G0018799	MGP_SPRETEiJ_G0018798	Ltbp2 (MGP_SPRETEiJ_G0018797)	Isca2 (MGP_SPRETEiJ_G0018796)	Npc2 (MGP_SPRETEiJ_G0018795)	Syndig1l (MGP_SPRETEiJ_G0018794)	Vrtn (MGP_SPRETEiJ_G0018793)	Abcd4 (MGP_SPRETEiJ_G0018792) ##22	Vsx2 (MGP_SPRETEiJ_G0018791)	MGP_SPRETEiJ_G0018790	Aldh6a1 (MGP_SPRETEiJ_G0018789)	Rnf113a2 (MGP_SPRETEiJ_G0018788)	Bbof1 (MGP_SPRETEiJ_G0018787)	Entpd5 (MGP_SPRETEiJ_G0018786)	Coq6 (MGP_SPRETEiJ_G0018785)	Fam161b (MGP_SPRETEiJ_G0018784)	Zfp410 (MGP_SPRETEiJ_G0018783)	Ptgr2 (MGP_SPRETEiJ_G0018782)	Mideas (MGP_SPRETEiJ_G0018781)	Pnma1 (MGP_SPRETEiJ_G0018780) ##9	Dnal1 (MGP_SPRETEiJ_G0018779)	MGP_SPRETEiJ_G0018778	Acot5 (MGP_SPRETEiJ_G0018777)
Steppe mouse	MODERN SPECIES	3303			Pgf (ENSMSIG00000005142)	Rps6kl1 (ENSMSIG00000005067)	Dlst (ENSMSIG00000005032)	Prox2 (ENSMSIG00000005003)	Ylpm1 (ENSMSIG00000004817)	ENSMSIG00000004690	Arel1 (ENSMSIG00000004619)	ENSMSIG00000004608	Ltbp2 (ENSMSIG00000004256)	Isca2 (ENSMSIG00000004207)	Npc2 (ENSMSIG00000004195)	ENSMSIG00000004137	Vrtn (ENSMSIG00000004123)	Abcd4 (ENSMSIG00000003952) ##22	Vsx2 (ENSMSIG00000003898)	ENSMSIG00000003864	Aldh6a1 (ENSMSIG00000003829)	Bbof1 (ENSMSIG00000003750)	Entpd5 (ENSMSIG00000003494)	Coq6 (ENSMSIG00000003335)	ENSMSIG00000003267	Zfp410 (ENSMSIG00000003181)	Ptgr2 (ENSMSIG00000003090)	Mideas (ENSMSIG00000003037)	Pnma1 (ENSMSIG00000003016) ##9	Dnal1 (ENSMSIG00000002943)	Acot6 (ENSMSIG00000002911)	Acot5 (ENSMSIG00000002856)	ENSMSIG00000002825
Mouse	MODERN SPECIES	3	Acyp1 (ENSMUSG00000008822)	Mlh3 (ENSMUSG00000021245)	Eif2b2 (ENSMUSG00000004788)	Pgf (ENSMUSG00000004791)	Rps6kl1 (ENSMUSG00000019235)	Dlst (ENSMUSG00000004789)	Prox2 (ENSMUSG00000042320)	Ylpm1 (ENSMUSG00000021244)	Fcf1 (ENSMUSG00000021243)	Arel1 (ENSMUSG00000042350)	Ltbp2 (ENSMUSG00000002020)	Isca2 (ENSMUSG00000021241)	Npc2 (ENSMUSG00000021242)	Syndig1l (ENSMUSG00000071234)	Vrtn (ENSMUSG00000071235)	Abcd4 (ENSMUSG00000021240) ##22	Vsx2 (ENSMUSG00000021239)	Lin52 (ENSMUSG00000085793)	Aldh6a1 (ENSMUSG00000021238)	Rnf113a2 (ENSMUSG00000098134)	Bbof1 (ENSMUSG00000057265)	Entpd5 (ENSMUSG00000021236)	Coq6 (ENSMUSG00000021235)	Fam161b (ENSMUSG00000021234)	Zfp410 (ENSMUSG00000042472)	Ptgr2 (ENSMUSG00000072946)	Mideas (ENSMUSG00000042507)	Pnma1 (ENSMUSG00000054383) ##9	Dnal1 (ENSMUSG00000042523)	Acot6 (ENSMUSG00000043487)	Acot5 (ENSMUSG00000042540)
Ryukyu mouse	MODERN SPECIES	3	Mlh3 (MGP_CAROLIEiJ_G0017962)	Eif2b2 (MGP_CAROLIEiJ_G0017961)	Pgf (MGP_CAROLIEiJ_G0017960)	Rps6kl1 (MGP_CAROLIEiJ_G0017959)	Dlst (MGP_CAROLIEiJ_G0017958)	Prox2 (MGP_CAROLIEiJ_G0017957)	Ylpm1 (MGP_CAROLIEiJ_G0017956)	Fcf1 (MGP_CAROLIEiJ_G0017955)	Arel1 (MGP_CAROLIEiJ_G0017954)	MGP_CAROLIEiJ_G0017953	Ltbp2 (MGP_CAROLIEiJ_G0017952)	Isca2 (MGP_CAROLIEiJ_G0017951)	Npc2 (MGP_CAROLIEiJ_G0017950)	Syndig1l (MGP_CAROLIEiJ_G0017949)	Vrtn (MGP_CAROLIEiJ_G0017948)	Abcd4 (MGP_CAROLIEiJ_G0017947) ##22	Vsx2 (MGP_CAROLIEiJ_G0017946)	MGP_CAROLIEiJ_G0017945	Aldh6a1 (MGP_CAROLIEiJ_G0017944)	Rnf113a2 (MGP_CAROLIEiJ_G0017943)	Bbof1 (MGP_CAROLIEiJ_G0017942)	Entpd5 (MGP_CAROLIEiJ_G0017941)	Coq6 (MGP_CAROLIEiJ_G0017940)	Fam161b (MGP_CAROLIEiJ_G0017939)	Zfp410 (MGP_CAROLIEiJ_G0017938)	Ptgr2 (MGP_CAROLIEiJ_G0017937)	Mideas (MGP_CAROLIEiJ_G0017936)	Pnma1 (MGP_CAROLIEiJ_G0017935) ##9	Dnal1 (MGP_CAROLIEiJ_G0017934)	Acot6 (MGP_CAROLIEiJ_G0017933)	Acot5 (MGP_CAROLIEiJ_G0017932)
Shrew mouse	MODERN SPECIES	20	Mlh3 (MGP_PahariEiJ_G0029721)	Eif2b2 (MGP_PahariEiJ_G0029720)	Pgf (MGP_PahariEiJ_G0029719)	Rps6kl1 (MGP_PahariEiJ_G0029718)	Dlst (MGP_PahariEiJ_G0029717)	Prox2 (MGP_PahariEiJ_G0029716)	Ylpm1 (MGP_PahariEiJ_G0029715)	Fcf1 (MGP_PahariEiJ_G0029714)	MGP_PahariEiJ_G0029713	MGP_PahariEiJ_G0029712	Ltbp2 (MGP_PahariEiJ_G0029711)	Isca2 (MGP_PahariEiJ_G0029710)	Npc2 (MGP_PahariEiJ_G0029709)	Syndig1l (MGP_PahariEiJ_G0029708)	Vrtn (MGP_PahariEiJ_G0029707)	Abcd4 (MGP_PahariEiJ_G0029706) ##22	Vsx2 (MGP_PahariEiJ_G0029705)	MGP_PahariEiJ_G0029704	Aldh6a1 (MGP_PahariEiJ_G0029703)	Rnf113a2 (MGP_PahariEiJ_G0029702)	Bbof1 (MGP_PahariEiJ_G0029701)	Entpd5 (MGP_PahariEiJ_G0029700)	Coq6 (MGP_PahariEiJ_G0029699)	Fam161b (MGP_PahariEiJ_G0029698)	Zfp410 (MGP_PahariEiJ_G0029697)	Ptgr2 (MGP_PahariEiJ_G0029696)	Mideas (MGP_PahariEiJ_G0029695)	Pnma1 (MGP_PahariEiJ_G0029694) ##9	Dnal1 (MGP_PahariEiJ_G0029693)	Acot6 (MGP_PahariEiJ_G0029692)	Acot5 (MGP_PahariEiJ_G0029691)
Rat	MODERN SPECIES	16	Mlh3 (ENSRNOG00000006699)	Eif2b2 (ENSRNOG00000006467)	Pgf (ENSRNOG00000005650)	Rps6kl1 (ENSRNOG00000005530)	Dlst (ENSRNOG00000005061)	Prox2 (ENSRNOG00000005054)	Lsm5 (ENSRNOG00000027305)	Ylpm1 (ENSRNOG00000027317)	Fcf1 (ENSRNOG00000004723)	Arel1 (ENSRNOG00000004382)	Ltbp2 (ENSRNOG00000012094)	Isca2 (ENSRNOG00000012085)	Npc2 (ENSRNOG00000012062)	Syndig1l (ENSRNOG00000027645)	Vrtn (ENSRNOG00000048378)	Abcd4 (ENSRNOG00000011964) ##22	Vsx2 (ENSRNOG00000011918)	Lin52 (ENSRNOG00000043441)	Aldh6a1 (ENSRNOG00000011419)	Rnf113a2 (ENSRNOG00000067995)	Bbof1 (ENSRNOG00000011376)	Entpd5 (ENSRNOG00000033206)	Coq6 (ENSRNOG00000011164)	Fam161b (ENSRNOG00000011112)	Zfp410 (ENSRNOG00000010985)	Ptgr2 (ENSRNOG00000038166)	Mideas (ENSRNOG00000010653)	Pnma1 (ENSRNOG00000010553) ##9	Dnal1 (ENSRNOG00000042333)	Acot6 (ENSRNOG00000029637)	Acot3 (ENSRNOG00000053460)
Actinopterygii	ANCESTRAL SPECIES	77	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00970000197141	ENSGT00940000156829	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b	ENSGT00630000089942	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a	ENSGT00390000009517	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00510000048375	ENSGT00940000159072	ENSGT00730000111268	ENSGT00510000048522	ENSGT00940000160164
Reedfish	MODERN SPECIES	7	fcf1 (ENSECRG00000017173)	AREL1 (ENSECRG00000016999)	LTBP2 (ENSECRG00000015364)	ENSECRG00000015129	pomt2 (ENSECRG00000015052)	gstz1 (ENSECRG00000014979)	zgc:163014 (ENSECRG00000014930)	tmed8 (ENSECRG00000014905)	ENSECRG00000014869	NOXRED1 (ENSECRG00000014839)	ATG2B (ENSECRG00000014756)	gskip (ENSECRG00000017056)	npc2.1 (ENSECRG00000017040)	isca2 (ENSECRG00000017018)	vrtn (ENSECRG00000017002)	abcd4 (ENSECRG00000016313) ##22	ENSECRG00000016155	vsx2 (ENSECRG00000016110)	lin52 (ENSECRG00000016087)	aldh6a1 (ENSECRG00000016005)	bbof1 (ENSECRG00000015944)	ENTPD5 (ENSECRG00000015903)	coq6 (ENSECRG00000015855)	FAM161B (ENSECRG00000015828)	znf410 (ENSECRG00000015760)	ngb (ENSECRG00000015729)	tmem63c (ENSECRG00000015623)	zdhhc22 (ENSECRG00000015570)	cipca (ENSECRG00000015552)	ENSECRG00000015521	ENSECRG00000015490
Neopterygii	ANCESTRAL SPECIES		ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00970000197141	ENSGT00940000156829	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a	ENSGT00390000009517	ENSGT00390000006223	ENSGT00390000005700	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b	ENSGT00390000015152	ENSGT00940000159998	ENSGT00940000158098	ENSGT00510000048375	ENSGT00940000159072	ENSGT00730000111268	ENSGT00510000048522	ENSGT00940000160164	ENSGT00910000144250
Osteoglossocephalai	ANCESTRAL SPECIES	13																ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156829	ENSGT00940000160884	ENSGT00940000156723	ENSGT00940000153117.B	ENSGT00390000012703.b	ENSGT00940000159057	ENSGT00940000154297.A.g.a	ENSGT00940000155454	ENSGT00940000159815	ENSGT00930000151014	ENSGT00940000154790.b.a.b	ENSGT00940000153433.A.f
Osteoglossiformes	ANCESTRAL SPECIES	705															ENSGT00950000183147.A.a.g.b	ENSGT00950000182955.a.a.b ##22
P. kingsleyae	MODERN SPECIES	134	ENSPKIG00000021248	naa30 (ENSPKIG00000021260)	ENSPKIG00000021272	ENSPKIG00000021283	H3C11 (ENSPKIG00000021291)	ENSPKIG00000021304	ENSPKIG00000021314	ENSPKIG00000021326	ENSPKIG00000021371	wdr21 (ENSPKIG00000021382)	pigh (ENSPKIG00000021400)	ino80 (ENSPKIG00000021450)	chac1 (ENSPKIG00000021542)	dll4 (ENSPKIG00000021562)	syndig1l (ENSPKIG00000021585)	abcd4 (ENSPKIG00000021635) ##22	ENSPKIG00000021756	ENSPKIG00000021826	esrrb (ENSPKIG00000021874)	TGFB3 (ENSPKIG00000021894)	ENSPKIG00000021909	ENSPKIG00000021914	FLVCR2 (ENSPKIG00000021940)	BATF (ENSPKIG00000021976)	JDP2 (ENSPKIG00000021990)	ENSPKIG00000022002	fosab (ENSPKIG00000022013)	tmed10 (ENSPKIG00000022024)
Asian bonytongue	MODERN SPECIES	18	ENSSFOG00015032740	ENSSFOG00015008573	RPS3A (ENSSFOG00015033020)	ENSSFOG00015033078	FHIP1A (ENSSFOG00015027161)	FBXW7 (ENSSFOG00015008564)	FHDC1 (ENSSFOG00015008598)	ENSSFOG00015008641	rnf175 (ENSSFOG00015008678)	SFRP2 (ENSSFOG00015008727)	plrg1 (ENSSFOG00015008745)	fgb (ENSSFOG00015008800)	fga (ENSSFOG00015008811)	fgg (ENSSFOG00015008855)	syndig1l (ENSSFOG00015008898)	abcd4 (ENSSFOG00015030444) ##22	DCLK2 (ENSSFOG00015009017)	NR3C2 (ENSSFOG00015009037)	ARHGAP10 (ENSSFOG00015009072)	tmem184c (ENSSFOG00015009117)	ednrab (ENSSFOG00015025904)	TTC29 (ENSSFOG00015009429)	pou4f2 (ENSSFOG00015031288)	slc10a7 (ENSSFOG00015009515)	REELD1 (ENSSFOG00015009578)	ZNF827 (ENSSFOG00015009634)	ENSSFOG00015009770	ENSSFOG00015025114	ENSSFOG00015010076	anapc10 (ENSSFOG00015013182)	hhip (ENSSFOG00015013203)
Clupeocephala	ANCESTRAL SPECIES	17																ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00940000157776.c.b	ENSGT00390000008402	ENSGT00940000156829	ENSGT00940000160884	ENSGT00940000156723	ENSGT00940000153117.B	ENSGT00390000012703.b	ENSGT00940000159057	ENSGT00940000154297.A.g.a	ENSGT00940000155454.w.b	ENSGT00940000155454.w.a	ENSGT00940000159815	ENSGT00930000151014.q
Otomorpha	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.b ##22
Clupeiformes	ANCESTRAL SPECIES	168	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00950000182863.B.a	ENSGT00940000154681.a	ENSGT00740000115534.a.b	ENSGT00940000154511.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b	ENSGT00940000153897.a	ENSGT00940000166855	ENSGT00940000159556	ENSGT00390000001263	ENSGT00950000182955.a.a.b ##22	ENSGT00940000155601.h
Denticle herring	MODERN SPECIES	14	asap1a (ENSDCDG00000016806)	fam49ba (ENSDCDG00000016053)	ENSDCDG00000015995	ENSDCDG00000015989	ankhb (ENSDCDG00000015960)	otulinb (ENSDCDG00000015911)	amph (ENSDCDG00000015718)	ENSDCDG00000015696	ENSDCDG00000015694	cebpd (ENSDCDG00000015370)	ENSDCDG00000015366	mapre2 (ENSDCDG00000015363)	dtna (ENSDCDG00000015359)	KLHL14 (ENSDCDG00000015350)	pak1ip1 (ENSDCDG00000015343)	abcd4 (ENSDCDG00000014926) ##22	CACNA1E (ENSDCDG00000001393)	pter (ENSDCDG00000000902)	ENSDCDG00000000897	gpt (ENSDCDG00000000453)	ENSDCDG00000000190	tsen15 (ENSDCDG00000000179)	ENSDCDG00000004501	imp3 (ENSDCDG00000004499)	slc35a3b (ENSDCDG00000004496)	ENSDCDG00000004493	CMPK1 (ENSDCDG00000004485)	bcl6ab (ENSDCDG00000004483)	ENSDCDG00000004480	dynlt5 (ENSDCDG00000004479)	SGIP1 (ENSDCDG00000004477)
Atlantic herring	MODERN SPECIES	17	RB1CC1 (ENSCHAG00000010136)	ENSCHAG00000010340	pcmtd1 (ENSCHAG00000010358)	SNTG1 (ENSCHAG00000010397)	snai2 (ENSCHAG00000010581)	snai2 (ENSCHAG00000010631)	ube2v2 (ENSCHAG00000010655)	mcm4 (ENSCHAG00000010865)	cebpd (ENSCHAG00000011537)	SPIDR (ENSCHAG00000011551)	mapre2 (ENSCHAG00000011563)	dtna (ENSCHAG00000011606)	ENSCHAG00000011834	KLHL14 (ENSCHAG00000011871)	pak1ip1 (ENSCHAG00000011894)	abcd4 (ENSCHAG00000012156) ##22	ENSCHAG00000014131	pter (ENSCHAG00000021349)	c1ql3b (ENSCHAG00000021389)	gpt (ENSCHAG00000021408)	samd13 (ENSCHAG00000021797)	gng5 (ENSCHAG00000021817)	ENSCHAG00000021841	FZR1 (ENSCHAG00000022116)	prdx1 (ENSCHAG00000022399)	zte38 (ENSCHAG00000022416)	aldh9a1b (ENSCHAG00000022438)	uck2b (ENSCHAG00000022543)	czib (ENSCHAG00000022576)	scp2a (ENSCHAG00000022653)	ENSCHAG00000023543
Otophysi	ANCESTRAL SPECIES	246	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b	ENSGT00940000153897.a	ENSGT00940000166855	ENSGT00940000171212	ENSGT00940000159556	ENSGT00950000182955.a.a.b ##22	ENSGT00390000001263
Characiphysae	ANCESTRAL SPECIES	146	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a	ENSGT00740000115534.a.b	ENSGT00940000154511.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b	ENSGT00940000153897.a	ENSGT00940000166855	ENSGT00940000171212	ENSGT00940000159556	ENSGT00950000182955.a.a.b ##22	ENSGT00940000154756.B.o.a	ENSGT00940000154756.A	ENSGT00940000168428.b.b.b	ENSGT00940000154756.B.p	ENSGT00940000177273	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000154772.a.a	ENSGT00390000001263
Characiphysae_b	ANCESTRAL SPECIES	137	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b	ENSGT00940000153897.a	ENSGT00940000166855	ENSGT00940000171212	ENSGT00940000159556	ENSGT00950000182955.a.a.b ##22	ENSGT00940000154756.B.o.a	ENSGT00940000154756.A	ENSGT00940000154772.a.a	ENSGT00390000001263	ENSGT00390000001912.e	ENSGT00950000183098.b.a.a
Characoidei	ANCESTRAL SPECIES	60	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b	ENSGT00940000153897.a	ENSGT00940000166855	ENSGT00940000171212	ENSGT00940000159556	ENSGT00950000182955.a.a.b ##22	ENSGT00940000154756.B.o.a	ENSGT00940000154756.A
Red-bellied piranha	MODERN SPECIES	323		mbtps2 (ENSPNAG00000012515)	phex (ENSPNAG00000012478)	PTCHD1 (ENSPNAG00000012408)	ENSPNAG00000002240	ENSPNAG00000012377	ube2v2 (ENSPNAG00000012343)	mcm4 (ENSPNAG00000012318)	ENSPNAG00000012251	cebpd (ENSPNAG00000012227)	mapre2 (ENSPNAG00000012207)	dtna (ENSPNAG00000002134)	ENSPNAG00000004810	ENSPNAG00000002092	KLHL14 (ENSPNAG00000002088)	abcd4 (ENSPNAG00000012057) ##22	ENSPNAG00000011962	ENSPNAG00000002022	ENSPNAG00000011940	ENSPNAG00000011923	ENSPNAG00000011913	ENSPNAG00000001994
Mexicana tetra	MODERN SPECIES	25	ENSAMXG00000043688	RB1CC1 (ENSAMXG00000004228)	ENSAMXG00000041785	ENSAMXG00000035774	pcmtd1 (ENSAMXG00000004269)	SNTG1 (ENSAMXG00000032073)	snai2 (ENSAMXG00000038235)	ube2v2 (ENSAMXG00000041649)	mcm4 (ENSAMXG00000004298)	cebpd (ENSAMXG00000037523)	SPIDR (ENSAMXG00000034318)	mapre2 (ENSAMXG00000033250)	dtna (ENSAMXG00000004333)	ENSAMXG00000044115	KLHL14 (ENSAMXG00000043692)	abcd4 (ENSAMXG00000004384) ##22	OBSCN (ENSAMXG00000004421)	ENSAMXG00000039627	ENSAMXG00000035374	ENSAMXG00000006218	pak1ip1 (ENSAMXG00000004470)	pck2 (ENSAMXG00000004486)	psme1 (ENSAMXG00000039644)	ENSAMXG00000030381	tgif1 (ENSAMXG00000038592)	DLGAP1 (ENSAMXG00000031066)	pdcd6 (ENSAMXG00000038741)	rec8b (ENSAMXG00000032839)	si:ch211-196f5.2 (ENSAMXG00000015420)	IPO4 (ENSAMXG00000037878)	nanog (ENSAMXG00000032305)
Electric eel	MODERN SPECIES	271				RB1CC1 (ENSEEEG00000010917)	ST18 (ENSEEEG00000010915)	pcmtd1 (ENSEEEG00000010913)	SNTG1 (ENSEEEG00000010912)	snai2 (ENSEEEG00000010911)	ube2v2 (ENSEEEG00000010905)	mcm4 (ENSEEEG00000010819)	cebpd (ENSEEEG00000010813)	ENSEEEG00000010811	mapre2 (ENSEEEG00000010810)	dtna (ENSEEEG00000010794)	KLHL14 (ENSEEEG00000010786)	abcd4 (ENSEEEG00000010660) ##22	ENSEEEG00000010642	ENSEEEG00000010634	ENSEEEG00000010448	ENSEEEG00000010443	TMEM132C (ENSEEEG00000010439)
Channel catfish	MODERN SPECIES		agap3 (ENSIPUG00000000137)	rb1cc1 (ENSIPUG00000000136)	ST18 (ENSIPUG00000000135)	ENSIPUG00000000134	pcmtd1 (ENSIPUG00000000133)	sntg1 (ENSIPUG00000000132)	snai2 (ENSIPUG00000000131)	ube2v2 (ENSIPUG00000000130)	mcm4 (ENSIPUG00000000129)	mapre2 (ENSIPUG00000000128)	spidr (ENSIPUG00000000127)	cebpd (ENSIPUG00000000126)	dtna (ENSIPUG00000000125)	ENSIPUG00000000124	ENSIPUG00000000123	klhl14 (ENSIPUG00000000122) ##22	ENSIPUG00000000121	ENSIPUG00000000120	ENSIPUG00000000119	ENSIPUG00000000117	ENSIPUG00000000116	ENSIPUG00000000115	ENSIPUG00000000114	ENSIPUG00000000113	tmem14cb (ENSIPUG00000000112)	pak1ip1 (ENSIPUG00000000111)	psme1 (ENSIPUG00000000110)	pck2 (ENSIPUG00000000109)	Arf2 (ENSIPUG00000000108)	ENSIPUG00000000107	grn (ENSIPUG00000000106)
Cyprinoidei	ANCESTRAL SPECIES	133	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a	ENSGT00740000115534.a.b.k.a	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b	ENSGT00940000153897.a	ENSGT00940000166855	ENSGT00940000171212	ENSGT00940000159556	ENSGT00950000182955.a.a.b ##22	ENSGT00940000154756.B.o.a	ENSGT00390000001263
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	32	ENSGT00940000154681.a.a	ENSGT00940000154365.a.a.b.b	ENSGT00940000159586.cb	ENSGT00390000015871.f	ENSGT00940000159905.bb	ENSGT00950000183032.A.b.b.a.a	ENSGT00950000182863.B.a.c	ENSGT00940000154681.a.b	ENSGT00740000115534.a.b.k.a	ENSGT01050000244824.A.r	ENSGT01050000244824.A.q	ENSGT00940000163032.q	ENSGT00490000043329.a.a.b.i	ENSGT00940000153897.a.w	ENSGT00940000159556.c	ENSGT00950000182955.a.a.b.o ##22	ENSGT00940000154756.A	ENSGT00940000154756.B.p.i.a.b.a	ENSGT00940000177473	ENSGT00940000154756.B.p.i.a.b.b	ENSGT00940000155271.wb.b	ENSGT00940000154772.a.a	ENSGT00390000001263.a	ENSGT00940000157762.m	ENSGT00940000154756.B.p.i.a.a	ENSGT00940000155271.wb.a	ENSGT00390000001263.b	ENSGT00940000157762.n	ENSGT00530000063835.b	ENSGT00400000022086.a.l	ENSGT00940000173219
Goldfish	MODERN SPECIES	1513	asic1c (ENSCARG00000040992)	asb10 (ENSCARG00000040960)	gbx1 (ENSCARG00000040936)	AGAP3 (ENSCARG00000039649)	RB1CC1 (ENSCARG00000036018)	ENSCARG00000035643	pcmtd1 (ENSCARG00000035588)	SNTG1 (ENSCARG00000035513)	snai2 (ENSCARG00000035497)	UBE2V2 (ENSCARG00000035421)	mcm4 (ENSCARG00000034639)	cebpd (ENSCARG00000034600)	mapre2 (ENSCARG00000034587)	dtna (ENSCARG00000034409)	KLHL14 (ENSCARG00000034391)	abcd4 (ENSCARG00000032531) ##22	ENSCARG00000032439	ENSCARG00000032411	ENSCARG00000032400	ENSCARG00000032396	ENSCARG00000032367	ENSCARG00000032325	ENSCARG00000030472	tmem14cb (ENSCARG00000030396)	pak1ip1 (ENSCARG00000030377)	ENSCARG00000030358	ENSCARG00000030351	riok3 (ENSCARG00000030219)	ENSCARG00000030208	ENSCARG00000030187	coasy (ENSCARG00000030172)
Cyprininae_a	ANCESTRAL SPECIES	100	ENSGT00390000014839.a.f	ENSGT00940000164727.b.c.b	ENSGT00940000158974.m.a	ENSGT00940000154365.a.a.b.a	ENSGT00940000159586.bb	ENSGT00390000015871.e	ENSGT00940000159905.cb	ENSGT00950000183032.A.b.b.a.b	ENSGT00950000182863.B.a.d	ENSGT00940000154681.a.a	ENSGT01050000244824.A.q	ENSGT00940000163032.q	ENSGT00490000043329.a.a.b.i	ENSGT00940000153897.a.w	ENSGT00940000159556.c	ENSGT00950000182955.a.a.b.o ##22	ENSGT00390000001263.a	ENSGT00940000157762.m	ENSGT00400000022086.a.l	ENSGT00940000173219	ENSGT00510000048348	ENSGT00940000157008.f	ENSGT00940000163949.a.e.b	ENSGT00550000075078.b	ENSGT00390000005900	ENSGT00950000183160.A.b	ENSGT00940000175331	ENSGT00470000042293.a.b.a.b	ENSGT00940000156497.b.a	ENSGT00940000163657.r	ENSGT00940000158710.c
Common carp reference	MODERN SPECIES	14	ENSCCRG00000060417	asb10 (ENSCCRG00000078815)	gbx1 (ENSCCRG00000033066)	AGAP3 (ENSCCRG00000072061)	ENSCCRG00000016855	ST18 (ENSCCRG00000010794)	pcmtd1 (ENSCCRG00000066894)	snai2 (ENSCCRG00000059025)	ENSCCRG00000032719	ube2v2 (ENSCCRG00000072674)	mcm4 (ENSCCRG00000065776)	cebpd (ENSCCRG00000070146)	mapre2 (ENSCCRG00000071866)	dtna (ENSCCRG00000052403)	KLHL14 (ENSCCRG00000069707)	abcd4 (ENSCCRG00000010117) ##22	ENSCCRG00000074043	ENSCCRG00000074704	tmem14cb (ENSCCRG00000036484)	ENSCCRG00000032489	tmem14cb (ENSCCRG00000047004)	ENSCCRG00000076074	ENSCCRG00000004715	riok3 (ENSCCRG00000009503)	ENSCCRG00000004619	coasy (ENSCCRG00000005281)	pus3 (ENSCCRG00000059480)	si:ch211-40k21.9 (ENSCCRG00000005295)	grnb (ENSCCRG00000005303)	ENSCCRG00000056255	ENSCCRG00000022469
Golden-line barbel	MODERN SPECIES	269	asb10 (ENSSGRG00000046116)	ENSSGRG00000046117	AGAP3 (ENSSGRG00000046120)	RB1CC1 (ENSSGRG00000046155)	ENSSGRG00000047333	pcmtd1 (ENSSGRG00000047335)	SNTG1 (ENSSGRG00000047336)	snai2 (ENSSGRG00000047357)	UBE2V2 (ENSSGRG00000047358)	mcm4 (ENSSGRG00000047360)	cebpd (ENSSGRG00000047395)	mapre2 (ENSSGRG00000047398)	dtna (ENSSGRG00000047399)	KLHL14 (ENSSGRG00000047402)	ENSSGRG00000047403	abcd4 (ENSSGRG00000047404) ##22	pak1ip1 (ENSSGRG00000048135)	ENSSGRG00000048136	ENSSGRG00000048138	ENSSGRG00000048139	riok3 (ENSSGRG00000048140)	TMEM241 (ENSSGRG00000048166)	coasy (ENSSGRG00000048170)	NAGLU (ENSSGRG00000048171)	pus3 (ENSSGRG00000048172)	si:ch211-40k21.9 (ENSSGRG00000048173)	grnb (ENSSGRG00000048174)	ENSSGRG00000048177	ENSSGRG00000048178	GRB7 (ENSSGRG00000048179)	srcin1b (ENSSGRG00000048180)
Cyprininae	ANCESTRAL SPECIES	862										ENSGT00940000163032.r	ENSGT00390000014654	ENSGT00490000043329.a.a.b.j	ENSGT00940000153897.a.x	ENSGT00940000166855	ENSGT00940000159556.d	ENSGT00950000182955.a.a.b.p ##22
Cyprininae_a	ANCESTRAL SPECIES	140	ENSGT00940000154365.a.a.b.b	ENSGT00940000159586.cb	ENSGT00390000015871.f	ENSGT00940000159905.bb	ENSGT00950000183032.A.b.b.a.a	ENSGT00950000182863.B.a.c	ENSGT00940000154681.a.b	ENSGT00740000115534.a.b.k.a	ENSGT01050000244824.A.r	ENSGT00940000163032.r	ENSGT00990000204685	ENSGT00490000043329.a.a.b.j	ENSGT00940000153897.a.x	ENSGT00940000166855	ENSGT00940000159556.d	ENSGT00950000182955.a.a.b.p ##22	ENSGT00940000154756.A	ENSGT00940000154756.B.p.i.a.b.a	ENSGT00940000177473	ENSGT00940000154756.B.p.i.a.b.b	ENSGT00940000155271.xb	ENSGT00940000155271.wb.b	ENSGT00940000154772.a.a	ENSGT00390000001263.b	ENSGT00940000157762.n	ENSGT00530000063835.b	ENSGT00940000157008.e	ENSGT00940000163949.a.f	ENSGT00550000075078.a	ENSGT00950000183160.A.a	ENSGT00470000042293.a.b.a.a.o
Common carp reference	MODERN SPECIES	40	gbx1 (ENSCCRG00000064481)	AGAP3 (ENSCCRG00000033152)	RB1CC1 (ENSCCRG00000016336)	ENSCCRG00000010767	pcmtd1 (ENSCCRG00000080487)	SNTG1 (ENSCCRG00000006477)	snai2 (ENSCCRG00000006444)	ube2v2 (ENSCCRG00000080995)	mcm4 (ENSCCRG00000022924)	cebpd (ENSCCRG00000022921)	ENSCCRG00000022913	mapre2 (ENSCCRG00000003670)	dtna (ENSCCRG00000052363)	ENSCCRG00000052387	KLHL14 (ENSCCRG00000071561)	abcd4 (ENSCCRG00000030339) ##22	ENSCCRG00000057552	ENSCCRG00000076750	pak1ip1 (ENSCCRG00000020664)	ENSCCRG00000020658	rbbp8 (ENSCCRG00000062274)	ENSCCRG00000076199	riok3 (ENSCCRG00000001500)	ENSCCRG00000074505	ENSCCRG00000065976	coasy (ENSCCRG00000060220)	pus3 (ENSCCRG00000046053)	ENSCCRG00000046048	ENSCCRG00000073782	ENSCCRG00000075755	ccr10 (ENSCCRG00000078278)
Golden-line barbel	MODERN SPECIES	18	gbx1 (ENSSGRG00000014629)	AGAP3 (ENSSGRG00000014420)	RB1CC1 (ENSSGRG00000013124)	ENSSGRG00000013117	pcmtd1 (ENSSGRG00000013115)	SNTG1 (ENSSGRG00000013112)	snai2 (ENSSGRG00000013111)	ube2v2 (ENSSGRG00000013000)	mcm4 (ENSSGRG00000012897)	cebpd (ENSSGRG00000012896)	ENSSGRG00000012894	mapre2 (ENSSGRG00000012892)	dtna (ENSSGRG00000012627)	ENSSGRG00000012611	ENSSGRG00000012609	abcd4 (ENSSGRG00000012506) ##22	ENSSGRG00000012494	ENSSGRG00000012490	ENSSGRG00000012488	ENSSGRG00000012487	ENSSGRG00000012484	ENSSGRG00000012480	ENSSGRG00000012377	tmem14cb (ENSSGRG00000012374)	pak1ip1 (ENSSGRG00000012356)	ENSSGRG00000012355	rbbp8 (ENSSGRG00000012353)	ENSSGRG00000012352	riok3 (ENSSGRG00000011407)	ENSSGRG00000011369	ENSSGRG00000011368
Zebrafish	MODERN SPECIES	16	ctnna1 (ENSDARG00000102441)	LRRTM2 (ENSDARG00000071374)	ENSDARG00000036117	RB1CC1 (ENSDARG00000076559)	pcmtd1 (ENSDARG00000053152)	SNTG1 (ENSDARG00000061832)	snai2 (ENSDARG00000040046)	ube2v2 (ENSDARG00000028198)	mcm4 (ENSDARG00000040041)	cebpd (ENSDARG00000087303)	mapre2 (ENSDARG00000099943)	dtna (ENSDARG00000031015)	ENSDARG00000090429	ENSDARG00000093709	KLHL14 (ENSDARG00000045275)	abcd4 (ENSDARG00000061770) ##22	ENSDARG00000022101	ENSDARG00000075850	ENSDARG00000102797	tmem14cb (ENSDARG00000114991)	pak1ip1 (ENSDARG00000044488)	ENSDARG00000077057	rbbp8 (ENSDARG00000043480)	TMEM241 (ENSDARG00000090685)	riok3 (ENSDARG00000042751)	si:ch211-40k21.5 (ENSDARG00000097264)	coasy (ENSDARG00000042747)	NAGLU (ENSDARG00000030156)	pus3 (ENSDARG00000028976)	si:ch211-40k21.9 (ENSDARG00000097546)	grnb (ENSDARG00000025081)
Euteleosteomorpha	ANCESTRAL SPECIES	454																ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a
Acanthomorphata	ANCESTRAL SPECIES	59	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745
Aplocheiloidei	ANCESTRAL SPECIES	36	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430
Mangrove rivulus	MODERN SPECIES	100														ENSKMAG00000014316	SGPP1 (ENSKMAG00000014303)	abcd4 (ENSKMAG00000014246) ##22	ENSKMAG00000014166	vsx2 (ENSKMAG00000014143)	eif2b2 (ENSKMAG00000014088)	pomca (ENSKMAG00000014073)	tmed10 (ENSKMAG00000014045)	fosab (ENSKMAG00000014021)	ENSKMAG00000014003	jdp2b (ENSKMAG00000013974)	ENSKMAG00000013946	ENSKMAG00000013878	esrrb (ENSKMAG00000013840)	TGFB3 (ENSKMAG00000013827)	FLVCR2 (ENSKMAG00000013797)	batf (ENSKMAG00000013768)	zc3h14 (ENSKMAG00000013693)
Turquoise killifish	MODERN SPECIES	1613	ENSNFUG00015004139	ENSNFUG00015004132	SNX9 (ENSNFUG00015004002)	KCNK2B (ENSNFUG00015003932)	ABHD1 (ENSNFUG00015003927)	ctsbb (ENSNFUG00015003917)	FDFT1 (ENSNFUG00015003910)	gata4 (ENSNFUG00015003901)	NCOA7 (ENSNFUG00015003895)	ENSNFUG00015003889	ENSNFUG00015003887	DAAM1B (ENSNFUG00015003756)	CABZ01039235.1 (ENSNFUG00015003724)	kcnh5a (ENSNFUG00015003719)	SGPP1 (ENSNFUG00015003712)	ABCD4 (ENSNFUG00015003638) ##22	ENSNFUG00015003592	ENSNFUG00015003577	UTRN (ENSNFUG00015003325)	EPM2A (ENSNFUG00015003246)	ENSNFUG00015003224	fbxo30b (ENSNFUG00015003214)	GRM1 (ENSNFUG00015003205)	RAB32A (ENSNFUG00015003194)	stxbp5a (ENSNFUG00015003084)	SAMD5 (ENSNFUG00015003021)	sash1a (ENSNFUG00015002986)	ENSNFUG00015002974	UST (ENSNFUG00015002971)	ENSNFUG00015002967	stx11b.2 (ENSNFUG00015002963)
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00550000074908
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.x	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00550000074908
Poecilia	ANCESTRAL SPECIES	9	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837.k	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a.f	ENSGT00940000155693.a.a.e	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00550000074908
NAME_6	ANCESTRAL SPECIES	2	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000168254	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837.k	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a.f	ENSGT00940000155693.a.a.e	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00550000074908
Sailfin molly	MODERN SPECIES	322										ENSPLAG00000014921	ppp1r13bb (ENSPLAG00000014905)	daam1b (ENSPLAG00000000519)	L3HYPDH (ENSPLAG00000014791)	kcnh5a (ENSPLAG00000014782)	SGPP1 (ENSPLAG00000014751)	abcd4 (ENSPLAG00000014741) ##22	ENSPLAG00000014699	ENSPLAG00000014652	batf (ENSPLAG00000014633)	FLVCR2 (ENSPLAG00000014624)	TGFB3 (ENSPLAG00000014592)	esrrb (ENSPLAG00000014582)	ENSPLAG00000014558
Amazon molly	MODERN SPECIES	304	SNX9 (ENSPFOG00000004400)	ENSPFOG00000004737	kcnk2b (ENSPFOG00000004806)	ENSPFOG00000005024	ENSPFOG00000005269	ctsbb (ENSPFOG00000005337)	fdft1 (ENSPFOG00000005358)	gata4 (ENSPFOG00000022572)	NCOA7 (ENSPFOG00000005513)	ENSPFOG00000005680	ppp1r13bb (ENSPFOG00000005703)	daam1b (ENSPFOG00000005990)	L3HYPDH (ENSPFOG00000006416)	kcnh5a (ENSPFOG00000006503)	ENSPFOG00000006631	abcd4 (ENSPFOG00000006709) ##22	ENSPFOG00000006934	batf (ENSPFOG00000007199)	FLVCR2 (ENSPFOG00000007223)	TGFB3 (ENSPFOG00000007494)	esrrb (ENSPFOG00000007540)	YLPM1 (ENSPFOG00000007687)	ENSPFOG00000007812	ENSPFOG00000024079	DLST (ENSPFOG00000007814)	JDP2 (ENSPFOG00000007886)	JDP2 (ENSPFOG00000007903)	ENSPFOG00000007924	fosab (ENSPFOG00000008004)	tmed10 (ENSPFOG00000008076)	eif2b2 (ENSPFOG00000008104)
Guppy	MODERN SPECIES	452	ENSPREG00000000624	kcnk2b (ENSPREG00000020326)	ENSPREG00000020313	ENSPREG00000020292	ABHD1 (ENSPREG00000020269)	ctsbb (ENSPREG00000020258)	fdft1 (ENSPREG00000020248)	gata4 (ENSPREG00000020235)	NCOA7 (ENSPREG00000020213)	ENSPREG00000020200	ppp1r13bb (ENSPREG00000020137)	daam1b (ENSPREG00000020021)	L3HYPDH (ENSPREG00000019977)	kcnh5a (ENSPREG00000019954)	ENSPREG00000019931	abcd4 (ENSPREG00000019886) ##22	ENSPREG00000019814	vsx2 (ENSPREG00000019795)	ENSPREG00000019767	batf (ENSPREG00000019749)	FLVCR2 (ENSPREG00000019720)	ENSPREG00000019682	TGFB3 (ENSPREG00000019674)	esrrb (ENSPREG00000019646)	YLPM1 (ENSPREG00000019611)	ENSPREG00000019593	DLST (ENSPREG00000019575)	JDP2 (ENSPREG00000019566)	ENSPREG00000019546	fosab (ENSPREG00000019537)	tmed10 (ENSPREG00000019502)
Platyfish	MODERN SPECIES	6	KCNK2 (ENSXMAG00000021485)	ENSXMAG00000024204	ABHD1 (ENSXMAG00000003774)	ctsbb (ENSXMAG00000003780)	fdft1 (ENSXMAG00000003786)	ENSXMAG00000024126	gata4 (ENSXMAG00000009238)	ENSXMAG00000022620	ENSXMAG00000030054	ENSXMAG00000003810	ppp1r13bb (ENSXMAG00000003812)	daam1b (ENSXMAG00000003836)	L3HYPDH (ENSXMAG00000003859)	kcnh5a (ENSXMAG00000003864)	SGPP1 (ENSXMAG00000022329)	abcd4 (ENSXMAG00000003885) ##22	ENSXMAG00000029801	vsx2 (ENSXMAG00000024293)	batf (ENSXMAG00000025113)	FLVCR2 (ENSXMAG00000003955)	TGFB3 (ENSXMAG00000003970)	esrrb (ENSXMAG00000003978)	YLPM1 (ENSXMAG00000003988)	ENSXMAG00000004000	DLST (ENSXMAG00000022519)	JDP2 (ENSXMAG00000025219)	ENSXMAG00000013196	fosab (ENSXMAG00000004017)	tmed10 (ENSXMAG00000027668)	eif2b2 (ENSXMAG00000004027)	zc3h14 (ENSXMAG00000004041)
NAME_4	ANCESTRAL SPECIES	8	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00550000074908	ENSGT00440000038430
Sheepshead minnow	MODERN SPECIES	116	ENSCVAG00000022220	kcnk2b (ENSCVAG00000022243)	ENSCVAG00000022279	ABHD1 (ENSCVAG00000022287)	ctsbb (ENSCVAG00000022308)	fdft1 (ENSCVAG00000022314)	gata4 (ENSCVAG00000022324)	ENSCVAG00000022331	ENSCVAG00000022346	ENSCVAG00000000732	ppp1r13bb (ENSCVAG00000022434)	daam1b (ENSCVAG00000022472)	L3HYPDH (ENSCVAG00000022480)	kcnh5a (ENSCVAG00000022520)	SGPP1 (ENSCVAG00000022532)	abcd4 (ENSCVAG00000022611) ##22	ENSCVAG00000022663	vsx2 (ENSCVAG00000022693)	batf (ENSCVAG00000022701)	FLVCR2 (ENSCVAG00000022708)	TGFB3 (ENSCVAG00000022713)	esrrb (ENSCVAG00000022733)	YLPM1 (ENSCVAG00000022796)	ENSCVAG00000022806	DLST (ENSCVAG00000022836)	jdp2b (ENSCVAG00000022845)	ENSCVAG00000022851	fosab (ENSCVAG00000022858)	tmed10 (ENSCVAG00000022868)	eif2b2 (ENSCVAG00000022891)	zc3h14 (ENSCVAG00000000590)
Mummichog	MODERN SPECIES	2240	ENSFHEG00000000050	kcnk2b (ENSFHEG00000001196)	ENSFHEG00000001199	ENSFHEG00000001201	ENSFHEG00000001206	ctsbb (ENSFHEG00000001209)	fdft1 (ENSFHEG00000001212)	gata4 (ENSFHEG00000001214)	NCOA7 (ENSFHEG00000001220)	ENSFHEG00000001227	ppp1r13bb (ENSFHEG00000001247)	daam1b (ENSFHEG00000001262)	L3HYPDH (ENSFHEG00000001273)	kcnh5a (ENSFHEG00000001276)	SGPP1 (ENSFHEG00000001281)	abcd4 (ENSFHEG00000001288) ##22	ENSFHEG00000001297	vsx2 (ENSFHEG00000001302)	batf (ENSFHEG00000001304)	FLVCR2 (ENSFHEG00000001312)	TGFB3 (ENSFHEG00000001318)	esrrb (ENSFHEG00000001330)	YLPM1 (ENSFHEG00000001344)	ENSFHEG00000001353	DLST (ENSFHEG00000001363)	JDP2 (ENSFHEG00000001367)	ENSFHEG00000001372	fosab (ENSFHEG00000001375)	tmed10 (ENSFHEG00000001378)	eif2b2 (ENSFHEG00000001385)	ENSFHEG00000001391
Oryzias	ANCESTRAL SPECIES	69	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00530000063775.a.b	ENSGT00940000154550.a	ENSGT00950000182852.A.a.a.a
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00950000182852.A.a.a.a	ENSGT00940000154550.a	ENSGT00530000063775.a.b	ENSGT00940000155693.a.a	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000155724.r	ENSGT00940000156078.d	ENSGT00530000063503.a.b.g.a.e	ENSGT01010000222287.B.b.a.b.b.a	ENSGT00390000013856
Javanese ricefish	MODERN SPECIES	16	SNX9 (ENSOJAG00000008311)	ENSOJAG00000008835	kcnk2b (ENSOJAG00000008846)	ENSOJAG00000008865	ABHD1 (ENSOJAG00000008887)	ctsbb (ENSOJAG00000008909)	fdft1 (ENSOJAG00000009013)	gata4 (ENSOJAG00000009077)	NCOA7 (ENSOJAG00000009107)	ENSOJAG00000009132	ppp1r13bb (ENSOJAG00000009319)	daam1b (ENSOJAG00000010373)	L3HYPDH (ENSOJAG00000010931)	kcnh5a (ENSOJAG00000010939)	SGPP1 (ENSOJAG00000010992)	abcd4 (ENSOJAG00000011060) ##22	ENSOJAG00000011695	vsx2 (ENSOJAG00000012286)	eif2b2 (ENSOJAG00000012403)	FILIP1 (ENSOJAG00000012428)	COX7A2 (ENSOJAG00000012433)	NT5E (ENSOJAG00000012499)	jdp2b (ENSOJAG00000013063)	ENSOJAG00000013078	fosab (ENSOJAG00000013093)	tmed10 (ENSOJAG00000013126)	SENP6 (ENSOJAG00000013200)	myo6a (ENSOJAG00000013278)	ENSOJAG00000013566	HTR1B (ENSOJAG00000013616)	mei4 (ENSOJAG00000013636)
Indian medaka	MODERN SPECIES	22	KCNK2 (ENSOMEG00000020822)	ENSOMEG00000020847	ENSOMEG00000020852	ABHD1 (ENSOMEG00000020885)	ctsbb (ENSOMEG00000020921)	fdft1 (ENSOMEG00000020947)	gata4 (ENSOMEG00000020993)	ENSOMEG00000021005	ENSOMEG00000021020	ENSOMEG00000021030	ENSOMEG00000021063	ppp1r13bb (ENSOMEG00000021175)	daam1b (ENSOMEG00000021362)	L3HYPDH (ENSOMEG00000021423)	kcnh5a (ENSOMEG00000021461)	abcd4 (ENSOMEG00000021555) ##22	ENSOMEG00000021630	vsx2 (ENSOMEG00000021724)	eif2b2 (ENSOMEG00000021791)	FILIP1 (ENSOMEG00000021826)	COX7A2 (ENSOMEG00000021844)	NT5E (ENSOMEG00000021931)	lrp11 (ENSOMEG00000021973)	pcmt (ENSOMEG00000021999)	nup43 (ENSOMEG00000022035)	lats1 (ENSOMEG00000022074)	rab10 (ENSOMEG00000022106)	KIF3C (ENSOMEG00000022156)	ENSOMEG00000022173	ENSOMEG00000022190	dtnba (ENSOMEG00000022344)
Oryzias_a	ANCESTRAL SPECIES	39	ENSGT00950000182902.a.d	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00530000063775.a.b	ENSGT00940000154550.a	ENSGT00950000182852.A.a.a.a	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d
Japanese Medaka HdrR	MODERN SPECIES	16	ABHD1 (ENSORLG00000017314)	SNX9 (ENSORLG00000017321)	ENSORLG00000017323	ENSORLG00000017331	ENSORLG00000017340	ctsbb (ENSORLG00000017347)	fdft1 (ENSORLG00000017362)	gata4 (ENSORLG00000017374)	ENSORLG00000017384	ENSORLG00000027447	ppp1r13bb (ENSORLG00000017405)	daam1b (ENSORLG00000017437)	ENSORLG00000017447	ENSORLG00000027814	ENSORLG00000017450	abcd4 (ENSORLG00000017458) ##22	ENSORLG00000017485	ENSORLG00000022205	eif2b2 (ENSORLG00000017494)	tmed10 (ENSORLG00000017499)	fosab (ENSORLG00000024739)	ENSORLG00000017504	jdp2b (ENSORLG00000017506)	NT5E (ENSORLG00000017511)	COX7A2 (ENSORLG00000017514)	FILIP1 (ENSORLG00000017517)	ENSORLG00000017520	hsp90aa1.2 (ENSORLG00000025267)	ppp2r5cb (ENSORLG00000017553)	DIO3 (ENSORLG00000017559)	ENSORLG00000023816
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT01030000234625.B.d.c.b
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000159745
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00730000111174.f	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00730000111174.f	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00940000165510	ENSGT00950000182902.a.d.c	ENSGT00950000182902.a.d.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349.p	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00730000111174.f	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00940000165510	ENSGT00950000182902.a.d.c	ENSGT00950000182902.a.d.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349.p	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00730000111174.f	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.a
Haplochromini_B	ANCESTRAL SPECIES	22	ENSGT00940000165510	ENSGT00950000182902.a.d.c	ENSGT00950000182902.a.d.d	ENSGT00940000166128.c	ENSGT00390000016034	ENSGT00940000158349.p	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00730000111174.f	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.a
Zebra mbuna	MODERN SPECIES	1097	ENSMZEG00005016721	ENSMZEG00005016701	ctsbb (ENSMZEG00005016694)	ctsbb (ENSMZEG00005016681)	fdft1 (ENSMZEG00005016673)	gata4 (ENSMZEG00005016668)	ENSMZEG00005016663	ENSMZEG00005016662	cfap45 (ENSMZEG00005016659)	ENSMZEG00005016655	ppp1r13bb (ENSMZEG00005016646)	daam1b (ENSMZEG00005016609)	L3HYPDH (ENSMZEG00005016595)	ENSMZEG00005016585	ENSMZEG00005016583	abcd4 (ENSMZEG00005016566) ##22	ENSMZEG00005016539	vsx2 (ENSMZEG00005016530)	eif2b2 (ENSMZEG00005016450)	tmed10 (ENSMZEG00005016445)	fosab (ENSMZEG00005016439)	ENSMZEG00005016427	jdp2b (ENSMZEG00005016423)	ENSMZEG00005016419	DLST (ENSMZEG00005016409)	ENSMZEG00005016401	YLPM1 (ENSMZEG00005016383)	esrrb (ENSMZEG00005016372)	ENSMZEG00005016362	TGFB3 (ENSMZEG00005016356)	FLVCR2 (ENSMZEG00005016338)
Eastern happy	MODERN SPECIES	6	ENSACLG00000014418	ENSACLG00000014401	ENSACLG00000014393	ctsbb (ENSACLG00000014361)	fdft1 (ENSACLG00000014331)	gata4 (ENSACLG00000014316)	ENSACLG00000014282	ENSACLG00000014265	cfap45 (ENSACLG00000014253)	ENSACLG00000014246	ppp1r13bb (ENSACLG00000013884)	daam1b (ENSACLG00000013675)	L3HYPDH (ENSACLG00000013408)	ENSACLG00000013387	SGPP1 (ENSACLG00000013382)	abcd4 (ENSACLG00000013349) ##22	ENSACLG00000013330	vsx2 (ENSACLG00000013323)	eif2b2 (ENSACLG00000013294)	tmed10 (ENSACLG00000013280)	ENSACLG00000013275	fosab (ENSACLG00000013269)	ENSACLG00000013262	jdp2b (ENSACLG00000013258)	ENSACLG00000013199	DLST (ENSACLG00000013180)	ENSACLG00000013177	YLPM1 (ENSACLG00000013109)	esrrb (ENSACLG00000012797)	TGFB3 (ENSACLG00000012784)	FLVCR2 (ENSACLG00000012759)
P. nyererei	MODERN SPECIES	353	ENSPNYG00000009021	kcnk2b (ENSPNYG00000008908)	ENSPNYG00000008873	ENSPNYG00000008838	fdft1 (ENSPNYG00000008796)	gata4 (ENSPNYG00000008780)	ENSPNYG00000008766	ENSPNYG00000008713	ENSPNYG00000008699	cfap45 (ENSPNYG00000008667)	ppp1r13bb (ENSPNYG00000008590)	daam1b (ENSPNYG00000008482)	L3HYPDH (ENSPNYG00000008417)	kcnh5a (ENSPNYG00000008374)	SGPP1 (ENSPNYG00000008350)	abcd4 (ENSPNYG00000008312) ##22	ENSPNYG00000008264	vsx2 (ENSPNYG00000008171)	eif2b2 (ENSPNYG00000008123)	tmed10 (ENSPNYG00000008096)	fosab (ENSPNYG00000008073)	ENSPNYG00000007896	jdp2b (ENSPNYG00000007866)	DLST (ENSPNYG00000007848)	ENSPNYG00000007842	YLPM1 (ENSPNYG00000007791)	esrrb (ENSPNYG00000007760)	TGFB3 (ENSPNYG00000007736)	ENSPNYG00000007714	FLVCR2 (ENSPNYG00000007684)	batf (ENSPNYG00000007662)
Burton s mouthbrooder	MODERN SPECIES	276	ENSHBUG00000011462	ENSHBUG00000011479	ctsbb (ENSHBUG00000011508)	fdft1 (ENSHBUG00000000314)	gata4 (ENSHBUG00000011525)	ENSHBUG00000011535	ENSHBUG00000011597	ENSHBUG00000011601	cfap45 (ENSHBUG00000011608)	ENSHBUG00000011631	ppp1r13bb (ENSHBUG00000011733)	daam1b (ENSHBUG00000011796)	L3HYPDH (ENSHBUG00000011810)	kcnh5a (ENSHBUG00000011838)	ENSHBUG00000011846	abcd4 (ENSHBUG00000011978) ##22	ENSHBUG00000012052	vsx2 (ENSHBUG00000012075)	eif2b2 (ENSHBUG00000012113)	tmed10 (ENSHBUG00000012126)	fosab (ENSHBUG00000012155)	ENSHBUG00000012204	jdp2b (ENSHBUG00000012218)	ENSHBUG00000012234	DLST (ENSHBUG00000012267)	ENSHBUG00000012272	YLPM1 (ENSHBUG00000012325)	esrrb (ENSHBUG00000012379)	TGFB3 (ENSHBUG00000012406)	ENSHBUG00000012486	batf (ENSHBUG00000012500)
Lyretail cichlid	MODERN SPECIES	338	ENSNBRG00000018096	ENSNBRG00000018131	ENSNBRG00000018182	ctsbb (ENSNBRG00000018306)	fdft1 (ENSNBRG00000018326)	gata4 (ENSNBRG00000018383)	NCOA7 (ENSNBRG00000018393)	ENSNBRG00000018411	cfap45 (ENSNBRG00000018424)	ENSNBRG00000018451	ppp1r13bb (ENSNBRG00000018494)	daam1b (ENSNBRG00000018527)	L3HYPDH (ENSNBRG00000018569)	ENSNBRG00000018603	SGPP1 (ENSNBRG00000018629)	abcd4 (ENSNBRG00000018653) ##22	ENSNBRG00000018707	vsx2 (ENSNBRG00000018743)	eif2b2 (ENSNBRG00000018798)	tmed10 (ENSNBRG00000018828)	fosab (ENSNBRG00000018852)	ENSNBRG00000018888	jdp2b (ENSNBRG00000018983)	DLST (ENSNBRG00000019002)	ENSNBRG00000019031	ENSNBRG00000019044	YLPM1 (ENSNBRG00000019064)	esrrb (ENSNBRG00000019101)	ENSNBRG00000019123	FLVCR2 (ENSNBRG00000019135)	ENSNBRG00000019153
Nile tilapia	MODERN SPECIES	6	ENSONIG00000013541	ABHD1 (ENSONIG00000013550)	ctsbb (ENSONIG00000040884)	ctsbb (ENSONIG00000038588)	fdft1 (ENSONIG00000013551)	gata4 (ENSONIG00000013554)	NCOA7 (ENSONIG00000013557)	HINT3 (ENSONIG00000013561)	ENSONIG00000041404	ENSONIG00000013564	ppp1r13bb (ENSONIG00000013567)	daam1b (ENSONIG00000013573)	L3HYPDH (ENSONIG00000013579)	KCNH5 (ENSONIG00000013580)	SGPP1 (ENSONIG00000030916)	abcd4 (ENSONIG00000013589) ##22	ENSONIG00000013592	vsx2 (ENSONIG00000013597)	eif2b2 (ENSONIG00000015252)	tmed10 (ENSONIG00000015257)	fosab (ENSONIG00000036571)	ENSONIG00000015266	jdp2b (ENSONIG00000015268)	ENSONIG00000015269	DLST (ENSONIG00000015272)	ENSONIG00000038853	YLPM1 (ENSONIG00000015280)	esrrb (ENSONIG00000015282)	TGFB3 (ENSONIG00000015284)	ENSONIG00000015287	ENSONIG00000027931
Midas cichlid	MODERN SPECIES	271	kcnk2b (ENSACIG00000005070)	ENSACIG00000005027	ENSACIG00000004910	ctsbb (ENSACIG00000004873)	fdft1 (ENSACIG00000004817)	gata4 (ENSACIG00000004792)	ENSACIG00000004787	ENSACIG00000004773	ENSACIG00000004761	ENSACIG00000004714	ppp1r13bb (ENSACIG00000004683)	daam1b (ENSACIG00000004636)	L3HYPDH (ENSACIG00000004618)	kcnh5a (ENSACIG00000004587)	ENSACIG00000004575	abcd4 (ENSACIG00000004535) ##22	ENSACIG00000004498	vsx2 (ENSACIG00000004475)	eif2b2 (ENSACIG00000004446)	tmed10 (ENSACIG00000004425)	fosab (ENSACIG00000004214)	ENSACIG00000004076	jdp2b (ENSACIG00000004052)	DLST (ENSACIG00000004017)	ENSACIG00000004001	YLPM1 (ENSACIG00000003919)	esrrb (ENSACIG00000003902)	TGFB3 (ENSACIG00000003799)	ENSACIG00000003765	batf (ENSACIG00000003744)	zc3h14 (ENSACIG00000003703)
Pomacentridae	ANCESTRAL SPECIES	34	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253.e	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT01030000234625.B.d.c.b
Pomacentridae_A	ANCESTRAL SPECIES	33	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253.e	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT01030000234625.B.d.c.b
Amphiprion	ANCESTRAL SPECIES	51	ENSGT00950000182856.a.b.b	ENSGT00530000063775.a.b	ENSGT00390000013856	ENSGT01010000222287.B.b.a.b.b.a	ENSGT00530000063503.a.b.g.a.f	ENSGT00530000063503.a.b.g.a.e	ENSGT00940000156078.d	ENSGT00940000155724.r	ENSGT00950000182852.A.a.a.a	ENSGT00390000004660.C.a.a.d	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253.e	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT01030000234625.B.d.c.b
Clown anemonefish	MODERN SPECIES	677							SENP6 (ENSAOCG00000001966)	FILIP1 (ENSAOCG00000007092)	tmem30ab (ENSAOCG00000007061)	ercc4 (ENSAOCG00000007043)	ppp1r13bb (ENSAOCG00000006986)	daam1b (ENSAOCG00000006875)	L3HYPDH (ENSAOCG00000006795)	kcnh5a (ENSAOCG00000006770)	SGPP1 (ENSAOCG00000006736)	abcd4 (ENSAOCG00000006717) ##22	ENSAOCG00000006637	vsx2 (ENSAOCG00000006547)	eif2b2 (ENSAOCG00000006456)
Orange clownfish	MODERN SPECIES	2	NT5E (ENSAPEG00000021409)	mei4 (ENSAPEG00000021444)	HTR1B (ENSAPEG00000000304)	ENSAPEG00000000362	ENSAPEG00000000371	myo6a (ENSAPEG00000000388)	SENP6 (ENSAPEG00000000551)	FILIP1 (ENSAPEG00000000574)	tmem30ab (ENSAPEG00000000604)	ercc4 (ENSAPEG00000000628)	ppp1r13bb (ENSAPEG00000000846)	daam1b (ENSAPEG00000000913)	L3HYPDH (ENSAPEG00000000958)	kcnh5a (ENSAPEG00000001002)	SGPP1 (ENSAPEG00000001044)	abcd4 (ENSAPEG00000001064) ##22	ENSAPEG00000001198	ENSAPEG00000001297	vsx2 (ENSAPEG00000001332)	eif2b2 (ENSAPEG00000001351)	tmed10 (ENSAPEG00000001388)	fosab (ENSAPEG00000001415)	ENSAPEG00000001432	jdp2b (ENSAPEG00000001618)	ENSAPEG00000001634	DLST (ENSAPEG00000001698)	ENSAPEG00000001710	YLPM1 (ENSAPEG00000001749)	esrrb (ENSAPEG00000001797)	TGFB3 (ENSAPEG00000001818)	FLVCR2 (ENSAPEG00000001849)
Spiny chromis	MODERN SPECIES	653									NCOA7 (ENSAPOG00000020115)	ENSAPOG00000020023	ppp1r13bb (ENSAPOG00000020002)	daam1b (ENSAPOG00000019861)	L3HYPDH (ENSAPOG00000019797)	kcnh5a (ENSAPOG00000019781)	SGPP1 (ENSAPOG00000019711)	abcd4 (ENSAPOG00000019702) ##22	ENSAPOG00000019610	vsx2 (ENSAPOG00000019555)	eif2b2 (ENSAPOG00000000548)	tmed10 (ENSAPOG00000000540)	fosab (ENSAPOG00000019454)	ENSAPOG00000019449
Bicolor damselfish	MODERN SPECIES	1033	ABHD1 (ENSSPAG00000005331)	ENSSPAG00000005319	ENSSPAG00000005311	ctsbb (ENSSPAG00000005283)	fdft1 (ENSSPAG00000005236)	gata4 (ENSSPAG00000005162)	ENSSPAG00000005149	ENSSPAG00000005121	ENSSPAG00000005110	ENSSPAG00000005094	ppp1r13bb (ENSSPAG00000004966)	daam1b (ENSSPAG00000004896)	L3HYPDH (ENSSPAG00000004865)	kcnh5a (ENSSPAG00000004834)	ENSSPAG00000004824	abcd4 (ENSSPAG00000004762) ##22	ENSSPAG00000004711
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.b
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.a
Tetraodontidae	ANCESTRAL SPECIES	15	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000168254	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00940000154790.b.b	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745
Fugu	MODERN SPECIES	7	SNX9 (ENSTRUG00000013436)	ENSTRUG00000013428	kcnk2b (ENSTRUG00000013276)	ENSTRUG00000012659	ABHD1 (ENSTRUG00000012547)	ctsbb (ENSTRUG00000012315)	fdft1 (ENSTRUG00000012217)	gata4 (ENSTRUG00000012112)	NCOA7 (ENSTRUG00000012001)	ENSTRUG00000025277	ENSTRUG00000011980	ppp1r13bb (ENSTRUG00000011779)	daam1b (ENSTRUG00000011584)	ENSTRUG00000011415	SGPP1 (ENSTRUG00000011371)	abcd4 (ENSTRUG00000011285) ##22	ENSTRUG00000011086	ENSTRUG00000026930	eif2b2 (ENSTRUG00000010849)	tmed10 (ENSTRUG00000010739)	fos (ENSTRUG00000010579)	ENSTRUG00000010431	jdp2b (ENSTRUG00000021670)	ENSTRUG00000010067	ENSTRUG00000028021	esrrb (ENSTRUG00000009721)	TGFB3 (ENSTRUG00000009598)	FLVCR2 (ENSTRUG00000019781)	batf (ENSTRUG00000027959)	zc3h14 (ENSTRUG00000009079)	ENSTRUG00000024798
Tetraodon	MODERN SPECIES	5	rps6kc1 (ENSTNIG00000016377)	ENSTNIG00000016376	SNX9 (ENSTNIG00000016375)	ENSTNIG00000016374	kcnk2b (ENSTNIG00000016373)	ENSTNIG00000016372	ABHD1 (ENSTNIG00000016371)	fdft1 (ENSTNIG00000016370)	gata4 (ENSTNIG00000016369)	NCOA7 (ENSTNIG00000016368)	ENSTNIG00000016367	ppp1r13bb (ENSTNIG00000016366)	daam1b (ENSTNIG00000016365)	kcnh5a (ENSTNIG00000016364)	SGPP1 (ENSTNIG00000016363)	abcd4 (ENSTNIG00000016362) ##22	ENSTNIG00000016361	ENSTNIG00000016360	eif2b2 (ENSTNIG00000016359)	tmed10 (ENSTNIG00000016358)	fosab (ENSTNIG00000016357)	ENSTNIG00000016356	jdp2b (ENSTNIG00000016355)	ENSTNIG00000016354	ENSTNIG00000016353	esrrb (ENSTNIG00000016352)	TGFB3 (ENSTNIG00000016351)	FLVCR2 (ENSTNIG00000016350)	batf (ENSTNIG00000016349)	zc3h14 (ENSTNIG00000016348)	ptk2bb (ENSTNIG00000016347)
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.a
Ballan wrasse	MODERN SPECIES	281	ENSLBEG00000012058	kcnk2b (ENSLBEG00000012028)	ENSLBEG00000011980	ABHD1 (ENSLBEG00000011941)	ctsbb (ENSLBEG00000011916)	fdft1 (ENSLBEG00000011877)	gata4 (ENSLBEG00000011847)	NCOA7 (ENSLBEG00000011818)	ENSLBEG00000011798	ENSLBEG00000011756	ppp1r13bb (ENSLBEG00000011620)	daam1b (ENSLBEG00000011322)	L3HYPDH (ENSLBEG00000011185)	kcnh5a (ENSLBEG00000011125)	SGPP1 (ENSLBEG00000011100)	abcd4 (ENSLBEG00000011018) ##22	ENSLBEG00000010926	vsx2 (ENSLBEG00000010732)
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.a
Perciformes	ANCESTRAL SPECIES	14	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.td	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.a
Cottioidei	ANCESTRAL SPECIES	23	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745
Lumpfish	MODERN SPECIES	16	ENSCLMG00005007418	kcnk2b (ENSCLMG00005020436)	ABHD1 (ENSCLMG00005020431)	ctsbb (ENSCLMG00005020430)	fdft1 (ENSCLMG00005020429)	gata4 (ENSCLMG00005020428)	NCOA7 (ENSCLMG00005020409)	ENSCLMG00005020408	ENSCLMG00005020407	ppp1r13bb (ENSCLMG00005019938)	ENSCLMG00005019926	daam1b (ENSCLMG00005019800)	L3HYPDH (ENSCLMG00005019792)	KCNH5 (ENSCLMG00005019791)	SGPP1 (ENSCLMG00005019790)	abcd4 (ENSCLMG00005019603) ##22	ENSCLMG00005019594	VSX2 (ENSCLMG00005019574)	eif2b2 (ENSCLMG00005019569)	tmed10 (ENSCLMG00005019567)	fosab (ENSCLMG00005019566)	ENSCLMG00005019544	JDP2 (ENSCLMG00005019541)	ENSCLMG00005019540	DLST (ENSCLMG00005019329)	ENSCLMG00005019321	YLPM1 (ENSCLMG00005019318)	ESRRB (ENSCLMG00005019316)	TGFB3 (ENSCLMG00005019292)	FLVCR2 (ENSCLMG00005019286)	batf (ENSCLMG00005019284)
Stickleback	MODERN SPECIES	18	SNX9 (ENSGACG00000010171)	ENSGACG00000010188	kcnk2b (ENSGACG00000010191)	ENSGACG00000010204	ABHD1 (ENSGACG00000010221)	ctsbb (ENSGACG00000010234)	fdft1 (ENSGACG00000010266)	gata4 (ENSGACG00000010274)	NCOA7 (ENSGACG00000010278)	ENSGACG00000010284	ppp1r13bb (ENSGACG00000010288)	daam1b (ENSGACG00000010299)	L3HYPDH (ENSGACG00000010318)	kcnh5a (ENSGACG00000010336)	SGPP1 (ENSGACG00000010351)	abcd4 (ENSGACG00000010354) ##22	ENSGACG00000010367	eif2b2 (ENSGACG00000010441)	tmed10 (ENSGACG00000010450)	fosab (ENSGACG00000010476)	ENSGACG00000010481	jdp2b (ENSGACG00000010513)	ENSGACG00000010524	DLST (ENSGACG00000010529)	ENSGACG00000010545	YLPM1 (ENSGACG00000010546)	esrrb (ENSGACG00000010561)	TGFB3 (ENSGACG00000010565)	FLVCR2 (ENSGACG00000010588)	batf (ENSGACG00000010594)	zc3h14 (ENSGACG00000010599)
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.td	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.a
Channel bull blenny	MODERN SPECIES	16	kcnk2b (ENSCGOG00000010602)	ENSCGOG00000010605	ABHD1 (ENSCGOG00000010606)	ctsbb (ENSCGOG00000010609)	fdft1 (ENSCGOG00000010611)	gata4 (ENSCGOG00000010645)	NCOA7 (ENSCGOG00000010652)	ENSCGOG00000010738	ENSCGOG00000010745	ppp1r13bb (ENSCGOG00000010751)	ENSCGOG00000010907	daam1b (ENSCGOG00000010945)	ENSCGOG00000011111	KCNH5 (ENSCGOG00000011116)	SGPP1 (ENSCGOG00000011124)	abcd4 (ENSCGOG00000011151) ##22	ENSCGOG00000011773	vsx2 (ENSCGOG00000013018)	eif2b2 (ENSCGOG00000013036)	tmed10 (ENSCGOG00000013100)	fosab (ENSCGOG00000013115)	ENSCGOG00000013119	jdp2b (ENSCGOG00000013123)	DLST (ENSCGOG00000013131)	ENSCGOG00000013159	YLPM1 (ENSCGOG00000013163)	esrrb (ENSCGOG00000013178)	TGFB3 (ENSCGOG00000013212)	ENSCGOG00000013254	batf (ENSCGOG00000013647)	snx17 (ENSCGOG00000013651)
Pike perch	MODERN SPECIES	4	ENSSLUG00000024883	KCNK2 (ENSSLUG00000024884)	ENSSLUG00000024885	ABHD1 (ENSSLUG00000024886)	ctsbb (ENSSLUG00000024893)	fdft1 (ENSSLUG00000024901)	gata4 (ENSSLUG00000024907)	NCOA7 (ENSSLUG00000024913)	ENSSLUG00000024916	ENSSLUG00000024920	ppp1r13bb (ENSSLUG00000024949)	daam1b (ENSSLUG00000025047)	L3HYPDH (ENSSLUG00000025088)	ENSSLUG00000025091	SGPP1 (ENSSLUG00000025093)	abcd4 (ENSSLUG00000025106) ##22	ENSSLUG00000025145	vsx2 (ENSSLUG00000025176)	eif2b2 (ENSSLUG00000025183)	tmed10 (ENSSLUG00000025188)	fosab (ENSSLUG00000025189)	ENSSLUG00000025193	JDP2 (ENSSLUG00000025202)	ENSSLUG00000025204	DLST (ENSSLUG00000025216)	ENSSLUG00000025235	ENSSLUG00000025239	ENSSLUG00000025243	esrrb (ENSSLUG00000025248)	TGFB3 (ENSSLUG00000025252)	FLVCR2 (ENSSLUG00000025259)
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000159745
Gilthead seabream	MODERN SPECIES	14	ENSSAUG00010002790	kcnk2b (ENSSAUG00010002808)	ENSSAUG00010002831	ABHD1 (ENSSAUG00010002895)	ctsbb (ENSSAUG00010003083)	fdft1 (ENSSAUG00010003090)	gata4 (ENSSAUG00010003096)	NCOA7 (ENSSAUG00010003134)	ENSSAUG00010004528	ENSSAUG00010004531	ppp1r13bb (ENSSAUG00010004582)	daam1b (ENSSAUG00010006758)	L3HYPDH (ENSSAUG00010006928)	kcnh5a (ENSSAUG00010006956)	SGPP1 (ENSSAUG00010007715)	abcd4 (ENSSAUG00010007771) ##22	ENSSAUG00010008793	vsx2 (ENSSAUG00010008905)	eif2b2 (ENSSAUG00010008912)	tmed10 (ENSSAUG00010008915)	fosab (ENSSAUG00010008920)	ENSSAUG00010008923	jdp2b (ENSSAUG00010008924)	ENSSAUG00010008926	DLST (ENSSAUG00010008933)	ENSSAUG00010009351	YLPM1 (ENSSAUG00010009355)	YLPM1 (ENSSAUG00010009369)	esrrb (ENSSAUG00010009387)	TGFB3 (ENSSAUG00010009390)	FLVCR2 (ENSSAUG00010009399)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000159745	ENSGT00440000038430
Large yellow croaker	MODERN SPECIES	482	ENSLCRG00005009510	kcnk2b (ENSLCRG00005009511)	ENSLCRG00005009512	ABHD1 (ENSLCRG00005009513)	ctsbb (ENSLCRG00005009524)	fdft1 (ENSLCRG00005009578)	gata4 (ENSLCRG00005009583)	NCOA7 (ENSLCRG00005009596)	si:dkey-25e12.3 (ENSLCRG00005010447)	ENSLCRG00005010449	ppp1r13bb (ENSLCRG00005010456)	daam1b (ENSLCRG00005011689)	L3HYPDH (ENSLCRG00005011845)	kcnh5a (ENSLCRG00005011847)	SGPP1 (ENSLCRG00005011873)	abcd4 (ENSLCRG00005011891) ##22	ENSLCRG00005012750	vsx2 (ENSLCRG00005013203)	eif2b2 (ENSLCRG00005013207)	tmed10 (ENSLCRG00005013219)	ENSLCRG00005013223	fosab (ENSLCRG00005013224)	ENSLCRG00005013225	jdp2b (ENSLCRG00005013226)	ENSLCRG00005013227	ENSLCRG00005013228	ENSLCRG00005013229	esrrb (ENSLCRG00005013231)	TGFB3 (ENSLCRG00005013233)	FLVCR2 (ENSLCRG00005013234)	batf (ENSLCRG00005013237)
European seabass	MODERN SPECIES	7	ENSDLAG00005013558	ENSDLAG00005028616	ENSDLAG00005013494	ENSDLAG00005013383	ctsbb (ENSDLAG00005013196)	ENSDLAG00005013169	gata4 (ENSDLAG00005013161)	ENSDLAG00005012798	ENSDLAG00005029515	ENSDLAG00005012214	ENSDLAG00005012000	ENSDLAG00005011986	ENSDLAG00005031391	ENSDLAG00005011850	ENSDLAG00005034267	ENSDLAG00005011058 ##22	ENSDLAG00005021841	ENSDLAG00005016948	eif2b2 (ENSDLAG00005032222)	tmed10 (ENSDLAG00005010986)	fosab (ENSDLAG00005010958)	ENSDLAG00005010932	ENSDLAG00005026347	ENSDLAG00005010885	ENSDLAG00005027128	ENSDLAG00005010630	ENSDLAG00005010599	ENSDLAG00005010587	ENSDLAG00005029128	ENSDLAG00005028314	ENSDLAG00005010517
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745
Carangaria	ANCESTRAL SPECIES	18	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745
Pleuronectoidei	ANCESTRAL SPECIES	11	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430
Turbot	MODERN SPECIES	12	ENSSMAG00000013039	ENSSMAG00000012973	ENSSMAG00000012945	ENSSMAG00000012915	ENSSMAG00000012908	ctsbb (ENSSMAG00000012842)	ENSSMAG00000012802	gata4 (ENSSMAG00000012793)	ENSSMAG00000012775	ENSSMAG00000012765	ENSSMAG00000012751	ENSSMAG00000012682	ENSSMAG00000012563	ENSSMAG00000012524	ENSSMAG00000012504	ENSSMAG00000012436 ##22	ENSSMAG00000012400	ENSSMAG00000012357	eif2b2 (ENSSMAG00000012038)	tmed10 (ENSSMAG00000022433)	fosab (ENSSMAG00000012082)	ENSSMAG00000012096	ENSSMAG00000012103	DLST (ENSSMAG00000012118)	ENSSMAG00000012176	YLPM1 (ENSSMAG00000012182)	ENSSMAG00000012264	ENSSMAG00000033798	ENSSMAG00000012299	ENSSMAG00000021677	ENSSMAG00000011976
Tongue sole	MODERN SPECIES	32			ENSCSEG00000013856	FNDC4 (ENSCSEG00000013840)	ENSCSEG00000013833	ENSCSEG00000013823	znf513a (ENSCSEG00000013815)	snx17 (ENSCSEG00000013792)	atraid (ENSCSEG00000013777)	eif2b4 (ENSCSEG00000013734)	nme6 (ENSCSEG00000013723)	ENSCSEG00000013719	CHRNA2 (ENSCSEG00000013700)	ptk2bb (ENSCSEG00000013676)	zc3h14 (ENSCSEG00000013652)	abcd4 (ENSCSEG00000013636) ##22	ENSCSEG00000013617	vsx2 (ENSCSEG00000013609)
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.x	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745
Seriola	ANCESTRAL SPECIES	4	ENSGT00940000165540	ENSGT00940000165084	ENSGT00940000158687.a.a	ENSGT00950000183212.B	ENSGT00390000017252	ENSGT00550000075009	ENSGT00940000160284	ENSGT00390000013853	ENSGT00940000158299.a	ENSGT00940000157269.a.a	ENSGT00940000173326	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745
Greater amberjack	MODERN SPECIES	10	FNDC4 (ENSSDUG00000014323)	ENSSDUG00000014334	znf513a (ENSSDUG00000014347)	snx17 (ENSSDUG00000014375)	atraid (ENSSDUG00000014431)	eif2b4 (ENSSDUG00000014451)	nme6 (ENSSDUG00000014494)	ENSSDUG00000014521	CHRNA2 (ENSSDUG00000014529)	ptk2bb (ENSSDUG00000014546)	ENSSDUG00000014582	daam1b (ENSSDUG00000014610)	L3HYPDH (ENSSDUG00000014690)	kcnh5a (ENSSDUG00000014701)	SGPP1 (ENSSDUG00000014727)	abcd4 (ENSSDUG00000014738) ##22	ENSSDUG00000014824	vsx2 (ENSSDUG00000014864)	eif2b2 (ENSSDUG00000014892)	tmed10 (ENSSDUG00000014920)	fosab (ENSSDUG00000014939)	fosab (ENSSDUG00000015050)	ENSSDUG00000015080	jdp2b (ENSSDUG00000015263)	ENSSDUG00000015277	DLST (ENSSDUG00000015306)	ENSSDUG00000015329	YLPM1 (ENSSDUG00000015345)	esrrb (ENSSDUG00000015388)	TGFB3 (ENSSDUG00000015416)	FLVCR2 (ENSSDUG00000015509)
Yellowtail amberjack	MODERN SPECIES	2579			znf513a (ENSSLDG00000013483)	snx17 (ENSSLDG00000013436)	atraid (ENSSLDG00000013407)	eif2b4 (ENSSLDG00000013386)	nme6 (ENSSLDG00000013345)	ENSSLDG00000013331	CHRNA2 (ENSSLDG00000013323)	ptk2bb (ENSSLDG00000013211)	ENSSLDG00000013181	daam1b (ENSSLDG00000013098)	L3HYPDH (ENSSLDG00000013034)	kcnh5a (ENSSLDG00000013002)	ENSSLDG00000012980	abcd4 (ENSSLDG00000012878) ##22	ENSSLDG00000012826
Barramundi perch	MODERN SPECIES	162	kcnk2b (ENSLCAG00010008840)	ENSLCAG00010008833	ABHD1 (ENSLCAG00010008827)	ctsbb (ENSLCAG00010008813)	fdft1 (ENSLCAG00010008793)	ENSLCAG00010008788	gata4 (ENSLCAG00010008778)	NCOA7 (ENSLCAG00010008775)	si:dkey-25e12.3 (ENSLCAG00010008769)	ENSLCAG00010008765	ppp1r13bb (ENSLCAG00010008755)	daam1b (ENSLCAG00010008688)	L3HYPDH (ENSLCAG00010008674)	KCNH5 (ENSLCAG00010008671)	SGPP1 (ENSLCAG00010008665)	abcd4 (ENSLCAG00010008552) ##22	ENSLCAG00010008524	vsx2 (ENSLCAG00010008520)	eif2b2 (ENSLCAG00010008491)	tmed10 (ENSLCAG00010008470)	fosab (ENSLCAG00010008466)	ENSLCAG00010008465	jdp2b (ENSLCAG00010008462)	ENSLCAG00010008454	DLST (ENSLCAG00010008407)	ENSLCAG00010008381	YLPM1 (ENSLCAG00010008365)	esrrb (ENSLCAG00010008351)	TGFB3 (ENSLCAG00010008342)	ENSLCAG00010008338	ENSLCAG00010008334
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b	ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00440000038430
Climbing perch	MODERN SPECIES	15	ENSATEG00000009730	ENSATEG00000009677	ENSATEG00000009586	ENSATEG00000009575	ctsbb (ENSATEG00000008504)	ENSATEG00000008409	gata4 (ENSATEG00000008328)	ENSATEG00000029505	ENSATEG00000008225	HINT3 (ENSATEG00000026864)	ENSATEG00000008155	ENSATEG00000027953	ENSATEG00000007294	ENSATEG00000007263	ENSATEG00000007202	ENSATEG00000007157 ##22	ENSATEG00000007206	ENSATEG00000007137	eif2b2 (ENSATEG00000007102)	tmed10 (ENSATEG00000027216)	fosab (ENSATEG00000006737)	ENSATEG00000006400	ENSATEG00000006378	ENSATEG00000025438	DLST (ENSATEG00000006339)	ENSATEG00000006311	YLPM1 (ENSATEG00000006214)	ENSATEG00000006182	ENSATEG00000029956	ENSATEG00000006072	ENSATEG00000029792
Siamese fighting fish	MODERN SPECIES	13	kcnk2b (ENSBSLG00000013371)	ENSBSLG00000013217	ABHD1 (ENSBSLG00000013108)	ctsbb (ENSBSLG00000011798)	fdft1 (ENSBSLG00000011660)	gata4 (ENSBSLG00000011585)	NCOA7 (ENSBSLG00000010837)	ENSBSLG00000010745	ENSBSLG00000010642	ppp1r13bb (ENSBSLG00000009560)	ENSBSLG00000009534	daam1b (ENSBSLG00000009464)	L3HYPDH (ENSBSLG00000009452)	kcnh5a (ENSBSLG00000009363)	SGPP1 (ENSBSLG00000009354)	abcd4 (ENSBSLG00000008462) ##22	vsx2 (ENSBSLG00000008381)	eif2b2 (ENSBSLG00000008254)	tmed10 (ENSBSLG00000008221)	fosab (ENSBSLG00000008210)	ENSBSLG00000008204	JDP2 (ENSBSLG00000008200)	ENSBSLG00000008123	DLST (ENSBSLG00000007996)	ENSBSLG00000007977	YLPM1 (ENSBSLG00000007846)	esrrb (ENSBSLG00000007771)	TGFB3 (ENSBSLG00000007722)	ENSBSLG00000006790	batf (ENSBSLG00000006452)	zc3h14 (ENSBSLG00000006376)
Zig-zag eel	MODERN SPECIES	16	ENSMAMG00000020549	ENSMAMG00000025008	ENSMAMG00000020534	ctsbb (ENSMAMG00000020531)	ENSMAMG00000020523	gata4 (ENSMAMG00000020506)	ENSMAMG00000020498	ENSMAMG00000020489	ENSMAMG00000020482	ENSMAMG00000020447	ENSMAMG00000018056	ENSMAMG00000017978	ENSMAMG00000017966	ENSMAMG00000017947	ENSMAMG00000017937	ENSMAMG00000017858 ##22	ENSMAMG00000017836	eif2b2 (ENSMAMG00000017801)	tmed10 (ENSMAMG00000017781)	fosab (ENSMAMG00000024747)	ENSMAMG00000017536	ENSMAMG00000026076	ENSMAMG00000017509	DLST (ENSMAMG00000027751)	ENSMAMG00000017474	YLPM1 (ENSMAMG00000017450)	ENSMAMG00000017424	ENSMAMG00000017415	ENSMAMG00000025513	ENSMAMG00000017405	ENSMAMG00000017394
Tiger tail seahorse	MODERN SPECIES	340	FLVCR2 (ENSHCOG00000000262)	esrrb (ENSHCOG00000007835)	ENSHCOG00000007850	ENSHCOG00000007858	ENSHCOG00000007864	jdp2b (ENSHCOG00000007868)	ENSHCOG00000007878	fosab (ENSHCOG00000007886)	tmed10 (ENSHCOG00000007895)	eif2b2 (ENSHCOG00000007914)	ppp1r13bb (ENSHCOG00000007945)	daam1b (ENSHCOG00000008052)	L3HYPDH (ENSHCOG00000008061)	kcnh5a (ENSHCOG00000008109)	SGPP1 (ENSHCOG00000008121)	abcd4 (ENSHCOG00000008159) ##22	ENSHCOG00000008207	vsx2 (ENSHCOG00000008242)	ENSHCOG00000008251	psmb6 (ENSHCOG00000008258)	spint1b (ENSHCOG00000008268)	ENSHCOG00000008285	CEP170B (ENSHCOG00000008298)	ENSHCOG00000008311	ckbb (ENSHCOG00000008329)	cdc42bpb (ENSHCOG00000008423)	vipas39 (ENSHCOG00000008444)	ENSHCOG00000008466	ENSHCOG00000008481	ENSHCOG00000008514	ENSHCOG00000008527
Pinecone sodierfish	MODERN SPECIES	16	ENSMMDG00005022952	kcnk2b (ENSMMDG00005022955)	ABHD1 (ENSMMDG00005022961)	fdft1 (ENSMMDG00005023104)	gata4 (ENSMMDG00005023111)	ctsbb (ENSMMDG00005023115)	ENSMMDG00005023117	NCOA7 (ENSMMDG00005023120)	ENSMMDG00005023124	ENSMMDG00005023126	ppp1r13bb (ENSMMDG00005023164)	daam1b (ENSMMDG00005023665)	L3HYPDH (ENSMMDG00005023696)	kcnh5a (ENSMMDG00005023702)	ENSMMDG00005023704	abcd4 (ENSMMDG00005023733) ##22	ENSMMDG00005023918	vsx2 (ENSMMDG00005023942)	eif2b2 (ENSMMDG00005023950)	tmed10 (ENSMMDG00005023955)	fosab (ENSMMDG00005023962)	ENSMMDG00005023972	JDP2 (ENSMMDG00005024081)	DLST (ENSMMDG00005024090)	ENSMMDG00005024112	ENSMMDG00005024114	YLPM1 (ENSMMDG00005024116)	esrrb (ENSMMDG00005024121)	eif2b4 (ENSMMDG00005024126)	atraid (ENSMMDG00005024130)	snx17 (ENSMMDG00005024135)
Cod	MODERN SPECIES	13	ENSGMOG00000031975	ENSGMOG00000004081	ENSGMOG00000018136	ENSGMOG00000010799	ENSGMOG00000010807	ctsbb (ENSGMOG00000010815)	ENSGMOG00000010822	gata4 (ENSGMOG00000010832)	ENSGMOG00000010842	ENSGMOG00000010867	ENSGMOG00000010873	ENSGMOG00000010891	ENSGMOG00000010917	ENSGMOG00000010926	ENSGMOG00000010945	ENSGMOG00000010957 ##22	ENSGMOG00000010975	eif2b2 (ENSGMOG00000011032)	tmed10 (ENSGMOG00000011041)	fosab (ENSGMOG00000032190)	ENSGMOG00000011052	ENSGMOG00000011063	ENSGMOG00000025816	DLST (ENSGMOG00000011068)	ENSGMOG00000011081	YLPM1 (ENSGMOG00000011089)	ENSGMOG00000011117	ENSGMOG00000011125	ENSGMOG00000015362	ENSGMOG00000011150	ENSGMOG00000011154
Protacanthopterygii	ANCESTRAL SPECIES	215										ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a
Northern pike	MODERN SPECIES	17	ENSELUG00000009229	vrtn (ENSELUG00000009185)	emilin1a (ENSELUG00000009133)	stmn4 (ENSELUG00000009061)	il17a/f3 (ENSELUG00000009048)	mcm3 (ENSELUG00000009016)	paqr8 (ENSELUG00000008884)	znf395b (ENSELUG00000008831)	pnocb (ENSELUG00000008865)	ENSELUG00000008786	ENSELUG00000008760	si:ch211-63o20.7 (ENSELUG00000027051)	elp3 (ENSELUG00000008716)	KIF13B (ENSELUG00000008682)	HMBOX1 (ENSELUG00000008628)	abcd4 (ENSELUG00000008610) ##22	ENSELUG00000008557	vsx2 (ENSELUG00000008538)	tfap2d (ENSELUG00000008515)	hadhb (ENSELUG00000008448)	GAREM2 (ENSELUG00000024865)	rab10 (ENSELUG00000008334)	KIF3C (ENSELUG00000008250)	dtnba (ENSELUG00000008203)	dnmt3aa (ENSELUG00000008170)	dpysl5b (ENSELUG00000008137)	mapre3b (ENSELUG00000008103)	tmem214 (ENSELUG00000008066)	agbl5 (ENSELUG00000008027)	ost4 (ENSELUG00000007999)	selenoi (ENSELUG00000007979)
Salmoninae	ANCESTRAL SPECIES	672						ENSGT01030000234597.a.b.a.b.a.a	ENSGT01050000244824.B.m.b	ENSGT00940000159860.e	ENSGT00940000157136.b.h	ENSGT00950000183149.C.b.b	ENSGT01100000263491.a.b.a.a.a.b.a.n	ENSGT00940000166937	ENSGT00390000013141.d	ENSGT00940000155500.f.f	ENSGT00940000154928.c.a.b.a	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a.c
Salmoninae_a	ANCESTRAL SPECIES	30	ENSGT00940000167177.c.b	ENSGT00950000183147.A.a.g.b.d	ENSGT01100000265031	ENSGT00390000007874.d	ENSGT01030000234597.a.b.a.b.a.a	ENSGT01050000244824.B.m.b	ENSGT00940000159860.e	ENSGT00940000157136.b.h	ENSGT00950000183149.C.b.b	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.a.b	ENSGT00940000166937	ENSGT00390000013141.d	ENSGT00940000155500.f.f	ENSGT00940000154928.c.a.b.a	ENSGT00940000155621.wc	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a.c	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r.c	ENSGT00940000154790.b.a.a.b	ENSGT00440000039837.u.a.a	ENSGT00940000153433.A.e.e	ENSGT00940000155747.g.b.a	ENSGT01030000234625.B.d.c.b.c	ENSGT00940000159745.c.a	ENSGT00940000155693.a.a.c.b	ENSGT00940000164930.b.c	ENSGT00940000159276.h	ENSGT00550000074954.p.b	ENSGT00550000074908.o
Salmo	ANCESTRAL SPECIES	12	ENSGT01100000265031	ENSGT00390000007874.d	ENSGT01060000253605	ENSGT01030000234597.a.b.a.b.a.a	ENSGT01050000244824.B.m.b	ENSGT00940000159860.e	ENSGT00940000157136.b.h	ENSGT00950000183149.C.b.b	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.a.b	ENSGT00940000166937	ENSGT00390000013141.d	ENSGT00940000155500.f.f.c	ENSGT00940000155500.f.f.d	ENSGT00940000154928.c.a.b.a	ENSGT00940000155621.wc	ENSGT00950000182955.a.a.b ##22	ENSGT00940000165253	ENSGT00940000157776.c.a.c	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r.c	ENSGT00940000154790.b.a.a.b	ENSGT00440000039837.u.a.a	ENSGT00940000153433.A.e.e	ENSGT00940000155747.g.b.a	ENSGT01060000250365	ENSGT01030000234625.B.d.c.b.c	ENSGT00940000159745.c.a	ENSGT00940000155693.a.a.c.b	ENSGT00940000164930.b.c	ENSGT00940000159276.h	ENSGT00550000074954.p.b
River trout	MODERN SPECIES		syndig1l (ENSSTUG00000009299)	ENSSTUG00000009289	vrtn (ENSSTUG00000008961)	ENSSTUG00000008950	stmn4 (ENSSTUG00000008893)	paqr8 (ENSSTUG00000008862)	znf395b (ENSSTUG00000008848)	pnocb (ENSSTUG00000008844)	ENSSTUG00000008830	si:ch211-63o20.7 (ENSSTUG00000008818)	elp3 (ENSSTUG00000008675)	ENSSTUG00000008633	KIF13B (ENSSTUG00000006625)	HMBOX1 (ENSSTUG00000006541)	ENSSTUG00000006508	abcd4 (ENSSTUG00000005458) ##22	ENSSTUG00000004541	vsx2 (ENSSTUG00000004435)	ENSSTUG00000004417	DLST (ENSSTUG00000004322)	ENSSTUG00000004293	YLPM1 (ENSSTUG00000004188)	esrrb (ENSSTUG00000004129)	ENSSTUG00000004100	TGFB3 (ENSSTUG00000004067)	ENSSTUG00000004052	FLVCR2 (ENSSTUG00000003627)	batf (ENSSTUG00000003592)	jdp2b (ENSSTUG00000003563)	ENSSTUG00000003557	fosab (ENSSTUG00000003545)
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000103833	stmn4 (ENSSSAG00000092698)	ENSSSAG00000095104	ENSSSAG00000043476	mcm3 (ENSSSAG00000043532)	paqr8 (ENSSSAG00000106493)	znf395b (ENSSSAG00000043583)	pnocb (ENSSSAG00000115566)	ENSSSAG00000117071	si:ch211-63o20.7 (ENSSSAG00000043610)	elp3 (ENSSSAG00000043627)	ENSSSAG00000044344	ENSSSAG00000050640	ENSSSAG00000109642	ENSSSAG00000050666	ENSSSAG00000062923 ##22	ENSSSAG00000050699	ENSSSAG00000050757	ENSSSAG00000050768	DLST (ENSSSAG00000103763)	ENSSSAG00000089828	ENSSSAG00000050821	YLPM1 (ENSSSAG00000050827)	ENSSSAG00000110761	ENSSSAG00000119991	ENSSSAG00000110988	ENSSSAG00000116256	ENSSSAG00000050848	ENSSSAG00000119318	FLVCR2 (ENSSSAG00000121196)	ENSSSAG00000111782
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.b.q ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000182955.a.a.b.q ##22
Chinook salmon	MODERN SPECIES	2285																ENSOTSG00005020100 ##22
Oncorhynchus	ANCESTRAL SPECIES	30	ENSGT00940000167177.c.b	ENSGT00950000183147.A.a.g.b.d	ENSGT01100000265031	ENSGT00390000007874.d	ENSGT01030000234597.a.b.a.b.a.a	ENSGT00940000159860.e	ENSGT00940000157136.b.h	ENSGT00950000183149.C.b.b	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.a.b	ENSGT00940000166937	ENSGT00390000013141.d	ENSGT01030000235770	ENSGT00940000155500.f.f	ENSGT00940000154928.c.a.b.a	ENSGT00940000155621.wc	ENSGT00950000182955.a.a.b.r ##22	ENSGT00940000165253	ENSGT00940000157776.c.a.c	ENSGT00930000151014.r.c	ENSGT00940000154790.b.a.a.b	ENSGT00440000039837.u.a.a	ENSGT00940000153433.A.e.e	ENSGT00940000155747.g.b.a	ENSGT01030000234625.B.d.c.b.c	ENSGT00940000159745.d	ENSGT00940000155693.a.a.c.b	ENSGT00940000164930.b.c	ENSGT00940000159276.h	ENSGT00550000074954.p.b	ENSGT00550000074908.o	ENSGT00440000038430
Oncorhynchus_a	ANCESTRAL SPECIES	65	ENSGT00390000003855.b.e.b	ENSGT00940000167177.c.b	ENSGT00950000183147.A.a.g.b.d	ENSGT01100000265031	ENSGT00390000007874.d	ENSGT01030000234597.a.b.a.b.a.a	ENSGT00940000159860.e	ENSGT00940000157136.b.h	ENSGT00950000183149.C.b.b	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.a.b	ENSGT00940000166937	ENSGT00390000013141.d	ENSGT01030000235770	ENSGT00940000154928.c.a.b.a	ENSGT00940000155621.wc	ENSGT00950000182955.a.a.b.r ##22	ENSGT00940000165253	ENSGT00940000157776.c.a.c	ENSGT00930000151014.r.c	ENSGT00940000154790.b.a.a.b	ENSGT00440000039837.u.a.a	ENSGT00940000153433.A.e.e	ENSGT00940000155747.g.b.a	ENSGT01060000250365	ENSGT01030000234625.B.d.c.b.c	ENSGT00940000159745.d	ENSGT00940000159745.c.a	ENSGT00940000155693.a.a.c.b	ENSGT00940000164930.b.c	ENSGT00940000159276.h	ENSGT00550000074954.p.b
Coho salmon	MODERN SPECIES	13	syndig1l (ENSOKIG00005019243)	ENSOKIG00005019254	vrtn (ENSOKIG00005019305)	stmn4 (ENSOKIG00005019319)	paqr8 (ENSOKIG00005019342)	znf395b (ENSOKIG00005019351)	pnocb (ENSOKIG00005019355)	ENSOKIG00005019361	elp3 (ENSOKIG00005019388)	si:ch211-63o20.7 (ENSOKIG00005019467)	ENSOKIG00005019482	KIF13B (ENSOKIG00005019550)	ENSOKIG00005035639	HMBOX1 (ENSOKIG00005035647)	ENSOKIG00005035671	abcd4 (ENSOKIG00005035738) ##22	ENSOKIG00005036441	VSX2 (ENSOKIG00005036925)	DLST (ENSOKIG00005036997)	ENSOKIG00005037169	YLPM1 (ENSOKIG00005037183)	ENSOKIG00005037218	TGFB3 (ENSOKIG00005037277)	ENSOKIG00005037302	FLVCR2 (ENSOKIG00005037342)	ENSOKIG00005037448	ENSOKIG00005037454	ENSOKIG00005037463	BATF (ENSOKIG00005037479)	jdp2b (ENSOKIG00005037560)	ENSOKIG00005037581
Chinook salmon	MODERN SPECIES	291														HMBOX1 (ENSOTSG00005028429)	ENSOTSG00005028432	abcd4 (ENSOTSG00005028433) ##22	ENSOTSG00005028672	vsx2 (ENSOTSG00005028831)
Rainbow trout	MODERN SPECIES	25	ENSOMYG00000026829	ENSOMYG00000026839	vrtn (ENSOMYG00000026889)	stmn4 (ENSOMYG00000028415)	paqr8 (ENSOMYG00000028432)	znf395b (ENSOMYG00000028442)	pnocb (ENSOMYG00000028482)	ENSOMYG00000028530	si:ch211-63o20.7 (ENSOMYG00000028549)	elp3 (ENSOMYG00000028579)	ENSOMYG00000065766	ENSOMYG00000028638	ENSOMYG00000069168	ENSOMYG00000028674	ENSOMYG00000057616	ENSOMYG00000028708 ##22	ENSOMYG00000028732	ENSOMYG00000028747	DLST (ENSOMYG00000029020)	ENSOMYG00000070351	YLPM1 (ENSOMYG00000029570)	ENSOMYG00000059526	ENSOMYG00000029645	FLVCR2 (ENSOMYG00000029756)	ENSOMYG00000062253	JDP2 (ENSOMYG00000029811)	ENSOMYG00000075604	ENSOMYG00000055608	fosab (ENSOMYG00000029885)	tmed10 (ENSOMYG00000058487)	eif2b2 (ENSOMYG00000029925)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	4560														ENSHHUG00000040299	HMBOX1 (ENSHHUG00000040292)	ENSHHUG00000040288 ##22	ENSHHUG00000040268	ENSHHUG00000040266
Huchen	MODERN SPECIES	4276																ENSHHUG00000047156 ##22	ENSHHUG00000047157	vsx2 (ENSHHUG00000047181)
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	673	prox2 (ENSLOCG00000010701)	YLPM1 (ENSLOCG00000010710)	fcf1 (ENSLOCG00000010728)	AREL1 (ENSLOCG00000010734)	LTBP2 (ENSLOCG00000010749)	pomt2 (ENSLOCG00000010763)	gstz1 (ENSLOCG00000010781)	zgc:163014 (ENSLOCG00000010791)	ENSLOCG00000010816	ATG2B (ENSLOCG00000010820)	gskip (ENSLOCG00000010833)	npc2.1 (ENSLOCG00000010850)	isca2 (ENSLOCG00000010860)	syndig1l (ENSLOCG00000010870)	vrtn (ENSLOCG00000017704)	abcd4 (ENSLOCG00000010882) ##22	ENSLOCG00000010890 ##22	ENSLOCG00000010897	ENSLOCG00000010909	lin52 (ENSLOCG00000010928)	aldh6a1 (ENSLOCG00000010934)	bbof1 (ENSLOCG00000010949)	ENTPD5 (ENSLOCG00000010967)	coq6 (ENSLOCG00000010998)	FAM161B (ENSLOCG00000011006)	znf410 (ENSLOCG00000011015)	ngb (ENSLOCG00000011029)	ENSLOCG00000011039	tmem63c (ENSLOCG00000011047)	zdhhc22 (ENSLOCG00000011073)	cipca (ENSLOCG00000011077)
Spotted gar	MODERN SPECIES	673	YLPM1 (ENSLOCG00000010710)	fcf1 (ENSLOCG00000010728)	AREL1 (ENSLOCG00000010734)	LTBP2 (ENSLOCG00000010749)	pomt2 (ENSLOCG00000010763)	gstz1 (ENSLOCG00000010781)	zgc:163014 (ENSLOCG00000010791)	ENSLOCG00000010816	ATG2B (ENSLOCG00000010820)	gskip (ENSLOCG00000010833)	npc2.1 (ENSLOCG00000010850)	isca2 (ENSLOCG00000010860)	syndig1l (ENSLOCG00000010870)	vrtn (ENSLOCG00000017704)	abcd4 (ENSLOCG00000010882) ##22	ENSLOCG00000010890 ##22	ENSLOCG00000010897	ENSLOCG00000010909	lin52 (ENSLOCG00000010928)	aldh6a1 (ENSLOCG00000010934)	bbof1 (ENSLOCG00000010949)	ENTPD5 (ENSLOCG00000010967)	coq6 (ENSLOCG00000010998)	FAM161B (ENSLOCG00000011006)	znf410 (ENSLOCG00000011015)	ngb (ENSLOCG00000011029)	ENSLOCG00000011039	tmem63c (ENSLOCG00000011047)	zdhhc22 (ENSLOCG00000011073)	cipca (ENSLOCG00000011077)	actr10 (ENSLOCG00000011094)
Bilateria	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Chordata	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Mammalia	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Theria	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Glires	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Rodentia	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Sciuridae	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Marmotini	ANCESTRAL SPECIES																	ENSGT00950000182955.b ##22
Alpin marmot	MODERN SPECIES	402															ENSMMMG00000010295	ENSMMMG00000010296 ##22