Rodentia	ANCESTRAL SPECIES	7	ENSGT00730000111121	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949 #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00730000111121	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949 #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00730000111121	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949 #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Muroidea	ANCESTRAL SPECIES	4	ENSGT00730000111121	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949 #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00730000111121	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949 #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00730000111121	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949 #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00730000111121	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949 #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Chinese hamster chok1gshd	MODERN SPECIES	1	Zbed3 (ENSCGRG00001010271) #7	Pde8b (ENSCGRG00001015606) #8	Wdr41 (ENSCGRG00001008129) #9	ENSCGRG00001008932 #10	Otp (ENSCGRG00001022392) #11	Tbca (ENSCGRG00001021971) #12	Ap3b1 (ENSCGRG00001009397) #13	Scamp1 (ENSCGRG00001004428) #14	Lhfpl2 (ENSCGRG00001003627) #15	Arsb (ENSCGRG00001015736) #16	Dmgdh (ENSCGRG00001014647) #17	Bhmt2 (ENSCGRG00001007704) #18	ENSCGRG00001019116 #19	Jmy (ENSCGRG00001018071) #20	Homer1 (ENSCGRG00001013582) #21	Tent2 (ENSCGRG00001009951) #22	Cmya5 (ENSCGRG00001003968) #23	ENSCGRG00001008349 #24	Mtx3 (ENSCGRG00001011412) #25	Thbs4 (ENSCGRG00001016664) #26	Serinc5 (ENSCGRG00001018453) #27	Spz1 (ENSCGRG00001008238) #28	Zfyve16 (ENSCGRG00001010507) #29	Fam151b (ENSCGRG00001014403) #30	Ankrd34b (ENSCGRG00001007953) #31	DHFR (ENSCGRG00001012555) #32	Msh3 (ENSCGRG00001012207) #33	Rasgrf2 (ENSCGRG00001001184) #34	Ckmt2 (ENSCGRG00001019134) #35	Zcchc9 (ENSCGRG00001018367) #36	Acot12 (ENSCGRG00001010985) #37
Golden Hamster	MODERN SPECIES	620	Crhbp (ENSMAUG00000010702)	Aggf1 (ENSMAUG00000012678)	Pde8b (ENSMAUG00000015472) #8	Wdr41 (ENSMAUG00000004461) #9	Otp (ENSMAUG00000007760) #11	Tbca (ENSMAUG00000018233) #12	Ap3b1 (ENSMAUG00000001490) #13	Scamp1 (ENSMAUG00000018961) #14	Lhfpl2 (ENSMAUG00000020241) #15	Arsb (ENSMAUG00000005115) #16	Dmgdh (ENSMAUG00000011337) #17	Bhmt2 (ENSMAUG00000008057) #18	ENSMAUG00000004226 #19	Jmy (ENSMAUG00000015175) #20	Homer1 (ENSMAUG00000011151) #21	Tent2 (ENSMAUG00000012442) #22	Mtx3 (ENSMAUG00000022165) #25	Thbs4 (ENSMAUG00000009316) #26	Serinc5 (ENSMAUG00000009651) #27	Zfyve16 (ENSMAUG00000001716) #29	Fam151b (ENSMAUG00000022170) #30	Ankrd34b (ENSMAUG00000015327) #31	ENSMAUG00000020170 #32	Msh3 (ENSMAUG00000021619) #33	Rasgrf2 (ENSMAUG00000016036) #34	Ckmt2 (ENSMAUG00000008773) #35	Zcchc9 (ENSMAUG00000022026) #36	Acot12 (ENSMAUG00000019809) #37	Ssbp2 (ENSMAUG00000010660)	Atg10 (ENSMAUG00000011026)	ENSMAUG00000011243
Cricetidae_B	ANCESTRAL SPECIES	40	ENSGT00730000111121	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949 #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Northern American deer mouse	MODERN SPECIES	6	Aggf1 (ENSPEMG00000015659)	Pde8b (ENSPEMG00000020359) #8	ENSPEMG00000023412 #9	Tbca (ENSPEMG00000015419) #12	Ap3b1 (ENSPEMG00000021014) #13	Scamp1 (ENSPEMG00000029280) #14	Lhfpl2 (ENSPEMG00000029932) #15	Arsb (ENSPEMG00000020554) #16	Dmgdh (ENSPEMG00000021307) #17	Bhmt2 (ENSPEMG00000021198) #18	ENSPEMG00000020841 #19	ENSPEMG00000030474	ENSPEMG00000026488	Jmy (ENSPEMG00000021018) #20	Homer1 (ENSPEMG00000016563) #21	Tent2 (ENSPEMG00000022209) #22	Cmya5 (ENSPEMG00000020808) #23	ENSPEMG00000028963	Mtx3 (ENSPEMG00000020867) #25	Thbs4 (ENSPEMG00000021194) #26	Serinc5 (ENSPEMG00000020960) #27	Spz1 (ENSPEMG00000007489) #28	Zfyve16 (ENSPEMG00000020714) #29	ENSPEMG00000024785	Ankrd34b (ENSPEMG00000016771) #31	Dhfr (ENSPEMG00000029212) #32	Msh3 (ENSPEMG00000000200) #33	ENSPEMG00000026083 #34	Ckmt2 (ENSPEMG00000011299) #35	Zcchc9 (ENSPEMG00000016614) #36	Acot12 (ENSPEMG00000024088) #37
Prairie vole	MODERN SPECIES	6	Wdr41 (ENSMOCG00000006320) #9	ENSMOCG00000006214	Otp (ENSMOCG00000019228) #11	Tbca (ENSMOCG00000005814) #12	ENSMOCG00000006493	ENSMOCG00000005321	Ap3b1 (ENSMOCG00000017264) #13	Scamp1 (ENSMOCG00000001373) #14	Lhfpl2 (ENSMOCG00000001998) #15	Arsb (ENSMOCG00000000278) #16	Dmgdh (ENSMOCG00000004222) #17	Bhmt2 (ENSMOCG00000018570) #18	ENSMOCG00000012797 #19	Jmy (ENSMOCG00000000972) #20	Homer1 (ENSMOCG00000003233) #21	Tent2 (ENSMOCG00000013416) #22	Cmya5 (ENSMOCG00000020302) #23	Mtx3 (ENSMOCG00000017246) #25	Thbs4 (ENSMOCG00000017937) #26	Serinc5 (ENSMOCG00000017376) #27	Zfyve16 (ENSMOCG00000016512) #29	Fam151b (ENSMOCG00000012595) #30	Ankrd34b (ENSMOCG00000013232) #31	Dhfr (ENSMOCG00000014691) #32	Msh3 (ENSMOCG00000018492) #33	Rasgrf2 (ENSMOCG00000015751) #34	Ckmt2 (ENSMOCG00000003563) #35	Zcchc9 (ENSMOCG00000012433) #36	Acot12 (ENSMOCG00000015615) #37	Ssbp2 (ENSMOCG00000022756)	ENSMOCG00000011514
Murinae	ANCESTRAL SPECIES	24	ENSGT00730000111121	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949 #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Mus	ANCESTRAL SPECIES	22	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00900000143364	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949 #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00900000143364	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949 #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Mus_B	ANCESTRAL SPECIES	13	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00900000143364	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949 #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Mouse	MODERN SPECIES	4	Aggf1 (ENSMUSG00000021681)	Zbed3 (ENSMUSG00000041995) #7	Pde8b (ENSMUSG00000021684) #8	Wdr41 (ENSMUSG00000042015) ##9	Otp (ENSMUSG00000021685) #11	Tbca (ENSMUSG00000042043) #12	Ap3b1 (ENSMUSG00000021686) #13	Scamp1 (ENSMUSG00000021687) #14	Lhfpl2 (ENSMUSG00000045312) #15	Arsb (ENSMUSG00000042082) #16	Dmgdh (ENSMUSG00000042102) #17	Bhmt2 (ENSMUSG00000042118) #18	Bhmt (ENSMUSG00000074768) #19	Jmy (ENSMUSG00000021690) #20	Homer1 (ENSMUSG00000007617) #21	Tent2 (ENSMUSG00000042167) #22	Cmya5 (ENSMUSG00000047419) #23	Mtx3 (ENSMUSG00000021704) #25	Thbs4 (ENSMUSG00000021702) #26	Serinc5 (ENSMUSG00000021703) #27	Spz1 (ENSMUSG00000046957) #28	Zfyve16 (ENSMUSG00000021706) #29	Fam151b (ENSMUSG00000034334) #30	Ankrd34b (ENSMUSG00000045034) #31	Dhfr (ENSMUSG00000021707) #32	Gm20379 (ENSMUSG00000100622)	Msh3 (ENSMUSG00000014850) #33	Rasgrf2 (ENSMUSG00000021708) #34	Ckmt2 (ENSMUSG00000021622) #35	Zcchc9 (ENSMUSG00000021621) #36	Acot12 (ENSMUSG00000021620) #37
Mus_C	ANCESTRAL SPECIES	10	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00900000143364	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949 #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Steppe mouse	MODERN SPECIES	3412	ENSMSIG00000011421 #9	Otp (ENSMSIG00000011481) #11	ENSMSIG00000011491 #12	Ap3b1 (ENSMSIG00000011521) #13	Scamp1 (ENSMSIG00000011596) #14	Lhfpl2 (ENSMSIG00000011618) #15	Arsb (ENSMSIG00000011652) #16	Dmgdh (ENSMSIG00000011670) #17	Bhmt2 (ENSMSIG00000011736) #18	ENSMSIG00000011793	Jmy (ENSMSIG00000011806) #20	ENSMSIG00000011824	ENSMSIG00000011858	ENSMSIG00000011865	Homer1 (ENSMSIG00000011873) #21	Tent2 (ENSMSIG00000012117) #22	Cmya5 (ENSMSIG00000012218) #23	Mtx3 (ENSMSIG00000012405) #25	Thbs4 (ENSMSIG00000012423) #26	Serinc5 (ENSMSIG00000012451) #27	Spz1 (ENSMSIG00000012499) #28	Zfyve16 (ENSMSIG00000012506) #29	ENSMSIG00000012548 #30	Ankrd34b (ENSMSIG00000012559) #31	Dhfr (ENSMSIG00000012568) #32	Msh3 (ENSMSIG00000012586) #33
spretus	MODERN SPECIES	4	Zbed3 (MGP_SPRETEiJ_G0019677) #7	Pde8b (MGP_SPRETEiJ_G0019676) #8	MGP_SPRETEiJ_G0019675 #9	Otp (MGP_SPRETEiJ_G0019674) #11	Tbca (MGP_SPRETEiJ_G0019673) #12	Ap3b1 (MGP_SPRETEiJ_G0019672) #13	MGP_SPRETEiJ_G0019671	Scamp1 (MGP_SPRETEiJ_G0019670) #14	Lhfpl2 (MGP_SPRETEiJ_G0019669) #15	Arsb (MGP_SPRETEiJ_G0019668) #16	Dmgdh (MGP_SPRETEiJ_G0019667) #17	Bhmt2 (MGP_SPRETEiJ_G0019666) #18	MGP_SPRETEiJ_G0019665 #19	Jmy (MGP_SPRETEiJ_G0019664) #20	Homer1 (MGP_SPRETEiJ_G0019663) #21	Tent2 (MGP_SPRETEiJ_G0019662) #22	Cmya5 (MGP_SPRETEiJ_G0019661) #23	Mtx3 (MGP_SPRETEiJ_G0019660) #25	Thbs4 (MGP_SPRETEiJ_G0019659) #26	Serinc5 (MGP_SPRETEiJ_G0019658) #27	Spz1 (MGP_SPRETEiJ_G0019657) #28	Zfyve16 (MGP_SPRETEiJ_G0019656) #29	Fam151b (MGP_SPRETEiJ_G0019655) #30	Ankrd34b (MGP_SPRETEiJ_G0019654) #31	Dhfr (MGP_SPRETEiJ_G0019653) #32	MGP_SPRETEiJ_G0019652	Msh3 (MGP_SPRETEiJ_G0019651) #33	Rasgrf2 (MGP_SPRETEiJ_G0019650) #34	Ckmt2 (MGP_SPRETEiJ_G0019649) #35	Zcchc9 (MGP_SPRETEiJ_G0019648) #36	Acot12 (MGP_SPRETEiJ_G0019647) #37
Ryukyu mouse	MODERN SPECIES	4	MGP_CAROLIEiJ_G0018792 #9	Otp (MGP_CAROLIEiJ_G0018791) #11	Tbca (MGP_CAROLIEiJ_G0018790) #12	Ap3b1 (MGP_CAROLIEiJ_G0018789) #13	MGP_CAROLIEiJ_G0018788	Scamp1 (MGP_CAROLIEiJ_G0018787) #14	Lhfpl2 (MGP_CAROLIEiJ_G0018786) #15	MGP_CAROLIEiJ_G0018785	Arsb (MGP_CAROLIEiJ_G0018784) #16	MGP_CAROLIEiJ_G0018783	Dmgdh (MGP_CAROLIEiJ_G0018782) #17	Bhmt2 (MGP_CAROLIEiJ_G0018781) #18	MGP_CAROLIEiJ_G0018780 #19	Jmy (MGP_CAROLIEiJ_G0018779) #20	Homer1 (MGP_CAROLIEiJ_G0018778) #21	Tent2 (MGP_CAROLIEiJ_G0018777) #22	MGP_CAROLIEiJ_G0018776 #23	Mtx3 (MGP_CAROLIEiJ_G0018775) #25	Thbs4 (MGP_CAROLIEiJ_G0018774) #26	Serinc5 (MGP_CAROLIEiJ_G0018773) #27	Spz1 (MGP_CAROLIEiJ_G0018772) #28	Zfyve16 (MGP_CAROLIEiJ_G0018771) #29	Fam151b (MGP_CAROLIEiJ_G0018770) #30	Ankrd34b (MGP_CAROLIEiJ_G0018769) #31	Dhfr (MGP_CAROLIEiJ_G0018768) #32	Msh3 (MGP_CAROLIEiJ_G0018767) #33	Rasgrf2 (MGP_CAROLIEiJ_G0018766) #34	Ckmt2 (MGP_CAROLIEiJ_G0018765) #35	Zcchc9 (MGP_CAROLIEiJ_G0018764) #36	Acot12 (MGP_CAROLIEiJ_G0018763) #37	Ssbp2 (MGP_CAROLIEiJ_G0018762)
Shrew mouse	MODERN SPECIES	2	Zbed3 (MGP_PahariEiJ_G0015871) #7	Pde8b (MGP_PahariEiJ_G0015870) #8	MGP_PahariEiJ_G0015869 #9	Otp (MGP_PahariEiJ_G0015868) #11	Tbca (MGP_PahariEiJ_G0015867) #12	Ap3b1 (MGP_PahariEiJ_G0015866) #13	MGP_PahariEiJ_G0015865	Scamp1 (MGP_PahariEiJ_G0015864) #14	Lhfpl2 (MGP_PahariEiJ_G0015863) #15	Arsb (MGP_PahariEiJ_G0015862) #16	Dmgdh (MGP_PahariEiJ_G0015861) #17	MGP_PahariEiJ_G0015860 ##18	MGP_PahariEiJ_G0015859 #19	Jmy (MGP_PahariEiJ_G0015858) #20	Homer1 (MGP_PahariEiJ_G0015857) #21	Tent2 (MGP_PahariEiJ_G0015856) #22	Cmya5 (MGP_PahariEiJ_G0015855) #23	Mtx3 (MGP_PahariEiJ_G0015854) #25	Thbs4 (MGP_PahariEiJ_G0015853) #26	Serinc5 (MGP_PahariEiJ_G0015852) #27	Spz1 (MGP_PahariEiJ_G0015851) #28	Zfyve16 (MGP_PahariEiJ_G0015850) #29	Fam151b (MGP_PahariEiJ_G0015849) #30	Ankrd34b (MGP_PahariEiJ_G0015848) #31	Dhfr (MGP_PahariEiJ_G0015847) #32	Msh3 (MGP_PahariEiJ_G0015846) #33	Rasgrf2 (MGP_PahariEiJ_G0015845) #34	Ckmt2 (MGP_PahariEiJ_G0015844) #35	Zcchc9 (MGP_PahariEiJ_G0015843) #36	Acot12 (MGP_PahariEiJ_G0015842) #37	Ssbp2 (MGP_PahariEiJ_G0015841)
Rat	MODERN SPECIES	11	Wdr41 (ENSRNOG00000025462) #9	Otp (ENSRNOG00000010560) #11	Tbca (ENSRNOG00000048342) #12	ENSRNOG00000068970	Ap3b1 (ENSRNOG00000010624) #13	Scamp1 (ENSRNOG00000061582) #14	Lhfpl2 (ENSRNOG00000011032) #15	Arsb (ENSRNOG00000011150) #16	Dmgdh (ENSRNOG00000023588) #17	Bhmt2 (ENSRNOG00000040120) #18	LOC103691423 (ENSRNOG00000029988)	AABR07007675.2 (ENSRNOG00000058886)	Bhmt (ENSRNOG00000011200) #19	Jmy (ENSRNOG00000050343) #20	Homer1 (ENSRNOG00000047014) #21	Tent2 (ENSRNOG00000012099) #22	Cmya5 (ENSRNOG00000023803) #23	Mtx3 (ENSRNOG00000023837) #25	Thbs4 (ENSRNOG00000012471) #26	Serinc5 (ENSRNOG00000024039) #27	Spz1 (ENSRNOG00000013050) #28	Zfyve16 (ENSRNOG00000013055) #29	Fam151b (ENSRNOG00000024136) #30	Ankrd34b (ENSRNOG00000040166) #31	Dhfr (ENSRNOG00000013521) #32	ENSRNOG00000069130	ENSRNOG00000064838	Rasgrf2 (ENSRNOG00000056151) #34	Ckmt2 (ENSRNOG00000055450) #35	Zcchc9 (ENSRNOG00000051682) #36	Acot12 (ENSRNOG00000061414) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1658								Scamp1 (ENSNGAG00000014989) #14	Lhfpl2 (ENSNGAG00000000969) #15	Arsb (ENSNGAG00000000124) #16	Dmgdh (ENSNGAG00000016798) #17	Bhmt2 (ENSNGAG00000013853) #18	ENSNGAG00000020657 #19	Jmy (ENSNGAG00000019761) #20	Homer1 (ENSNGAG00000010741) #21	Tent2 (ENSNGAG00000014869) #22	Cmya5 (ENSNGAG00000019733) #23	Mtx3 (ENSNGAG00000017121) #25	Thbs4 (ENSNGAG00000003456) #26	Serinc5 (ENSNGAG00000000574) #27	Zfyve16 (ENSNGAG00000019708) #29	Fam151b (ENSNGAG00000005930) #30	Ankrd34b (ENSNGAG00000000386) #31	ENSNGAG00000019496	Dhfr (ENSNGAG00000018704) #32	Msh3 (ENSNGAG00000014298) #33	Rasgrf2 (ENSNGAG00000008843) #34	Ckmt2 (ENSNGAG00000020619) #35	Zcchc9 (ENSNGAG00000017736) #36	Acot12 (ENSNGAG00000009467) #37	Ssbp2 (ENSNGAG00000011787)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	45	Zbed3 (ENSJJAG00000018785) #7	Pde8b (ENSJJAG00000023506) #8	ENSJJAG00000014477 #9	Otp (ENSJJAG00000018309) #11	ENSJJAG00000010595 #12	Ap3b1 (ENSJJAG00000017048) #13	Scamp1 (ENSJJAG00000015531) #14	Lhfpl2 (ENSJJAG00000016377) #15	Arsb (ENSJJAG00000011676) #16	Dmgdh (ENSJJAG00000011285) #17	Bhmt2 (ENSJJAG00000011883) #18	ENSJJAG00000022436 #19	Jmy (ENSJJAG00000015924) #20	Homer1 (ENSJJAG00000014750) #21	ENSJJAG00000012875	Tent2 (ENSJJAG00000015469) #22	Cmya5 (ENSJJAG00000020442) #23	Mtx3 (ENSJJAG00000022368) #25	Thbs4 (ENSJJAG00000014572) #26	Serinc5 (ENSJJAG00000011189) #27	Zfyve16 (ENSJJAG00000019491) #29	Fam151b (ENSJJAG00000012833) #30	Ankrd34b (ENSJJAG00000000619) #31	ENSJJAG00000011657 #32	Msh3 (ENSJJAG00000021941) #33	Rasgrf2 (ENSJJAG00000016070) #34	Ckmt2 (ENSJJAG00000016214) #35	Zcchc9 (ENSJJAG00000015479) #36	Acot12 (ENSJJAG00000010888) #37	Ssbp2 (ENSJJAG00000010960)	Atg10 (ENSJJAG00000013587)
Lesser Egyptian jerboa	MODERN SPECIES	53	ENSJJAG00000005075	Ocrl (ENSJJAG00000023666)	Smarca1 (ENSJJAG00000002593)	ENSJJAG00000008872	ENSJJAG00000007116	ENSJJAG00000023370	ENSJJAG00000013754	ENSJJAG00000018368	Prr32 (ENSJJAG00000016058)	ENSJJAG00000009849	ENSJJAG00000018053	Tenm1 (ENSJJAG00000014199)	Sh2d1a (ENSJJAG00000000227)	ENSJJAG00000012879	Stag2 (ENSJJAG00000020364)	ENSJJAG00000023301 #22	Xiap (ENSJJAG00000006601)	Thoc2 (ENSJJAG00000017282)	Gria3 (ENSJJAG00000011967)	ENSJJAG00000008089	ENSJJAG00000021787	Mcts1 (ENSJJAG00000000514)	Cul4b (ENSJJAG00000012005)	Lamp2 (ENSJJAG00000004795)	Tex13c3 (ENSJJAG00000021107)	Atp1b4 (ENSJJAG00000012799)	ENSJJAG00000024118	Tmem255a (ENSJJAG00000011698)	Zbtb33 (ENSJJAG00000005119)	ENSJJAG00000019780
Kangaroo rat	MODERN SPECIES	347	Trappc13 (ENSDORG00000008478)	Trim23 (ENSDORG00000008476)	Aggf1 (ENSDORG00000005780)	Pde8b (ENSDORG00000006070) #8	ENSDORG00000006071 #9	Otp (ENSDORG00000014140) #11	Tbca (ENSDORG00000026937) #12	Ap3b1 (ENSDORG00000009609) #13	Scamp1 (ENSDORG00000011767) #14	Lhfpl2 (ENSDORG00000027446) #15	Arsb (ENSDORG00000009219) #16	Dmgdh (ENSDORG00000000991) #17	ENSDORG00000025667 #19	Jmy (ENSDORG00000005525) #20	Homer1 (ENSDORG00000009374) #21	Tent2 (ENSDORG00000007850) #22	Cmya5 (ENSDORG00000026339) #23	Mtx3 (ENSDORG00000028356) #25	Thbs4 (ENSDORG00000005073) #26	Serinc5 (ENSDORG00000005075) #27	Zfyve16 (ENSDORG00000002451) #29	Fam151b (ENSDORG00000015177) #30	Ankrd34b (ENSDORG00000026971) #31	Dhfr (ENSDORG00000024821) #32	Msh3 (ENSDORG00000005509) #33	Rasgrf2 (ENSDORG00000001359) #34	Ckmt2 (ENSDORG00000015691) #35	Zcchc9 (ENSDORG00000001300) #36	Acot12 (ENSDORG00000001303) #37	Ssbp2 (ENSDORG00000001305)	ENSDORG00000024485
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00730000111121	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949 #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Hystricomorpha	ANCESTRAL SPECIES	31	ENSGT00390000001362	ENSGT00730000111121	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26
Hystricomorpha_a	ANCESTRAL SPECIES	72	ENSGT00390000001362	ENSGT00730000111121	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26
Guinea pig	MODERN SPECIES	83		AGGF1 (ENSCPOG00000003545)	PDE8B (ENSCPOG00000001181) #8	WDR41 (ENSCPOG00000001183) #9	OTP (ENSCPOG00000009888) #11	TBCA (ENSCPOG00000035914) #12	AP3B1 (ENSCPOG00000000479) #13	SCAMP1 (ENSCPOG00000038700) #14	LHFPL2 (ENSCPOG00000035182) #15	ARSB (ENSCPOG00000040291) #16	DMGDH (ENSCPOG00000001913) #17	BHMT2 (ENSCPOG00000004265) #18	BHMT (ENSCPOG00000039971) #19	JMY (ENSCPOG00000008290) #20	HOMER1 (ENSCPOG00000007454) #21	TENT2 (ENSCPOG00000005462) #22	CMYA5 (ENSCPOG00000036038) #23	MTX3 (ENSCPOG00000024084) #25	THBS4 (ENSCPOG00000004926) #26	PARP4 (ENSCPOG00000014672)	ASPH (ENSCPOG00000007346)	CLVS1 (ENSCPOG00000007342)	CHD7 (ENSCPOG00000013385)	RAB2A (ENSCPOG00000035393)	CA8 (ENSCPOG00000025176)	TOX (ENSCPOG00000010812)	NSMAF (ENSCPOG00000013618)	SDCBP (ENSCPOG00000013616)	CYP7A1 (ENSCPOG00000003388)	UBXN2B (ENSCPOG00000023569)	ENSCPOG00000013830
Hystricomorpha_b	ANCESTRAL SPECIES	95	ENSGT00390000001362	ENSGT00730000111121	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26
Degu	MODERN SPECIES	279	ENSODEG00000018773	ENSODEG00000001711	AP3B1 (ENSODEG00000001757) #13	ENSODEG00000001855	ENSODEG00000001866	SCAMP1 (ENSODEG00000001895) #14	LHFPL2 (ENSODEG00000003251) #15	ENSODEG00000003273	ARSB (ENSODEG00000003302) #16	DMGDH (ENSODEG00000003394) #17	BHMT2 (ENSODEG00000003503) #18	BHMT (ENSODEG00000003547) #19	JMY (ENSODEG00000003622) #20	ENSODEG00000003653	HOMER1 (ENSODEG00000003750) #21	TENT2 (ENSODEG00000003946) #22	MTX3 (ENSODEG00000004002) #25	ENSODEG00000004025	THBS4 (ENSODEG00000004087) #26
Long-tailed chinchilla	MODERN SPECIES	132	PDE8B (ENSCLAG00000011619) #8	WDR41 (ENSCLAG00000010095) #9	OTP (ENSCLAG00000011647) #11	TBCA (ENSCLAG00000011463) #12	AP3B1 (ENSCLAG00000017374) #13	ENSCLAG00000017966	SCAMP1 (ENSCLAG00000010430) #14	LHFPL2 (ENSCLAG00000010028) #15	ENSCLAG00000009820	ARSB (ENSCLAG00000013316) #16	DMGDH (ENSCLAG00000014854) #17	BHMT2 (ENSCLAG00000013633) #18	BHMT (ENSCLAG00000010253) #19	JMY (ENSCLAG00000009333) #20	HOMER1 (ENSCLAG00000010571) #21	TENT2 (ENSCLAG00000010023) #22	CMYA5 (ENSCLAG00000009334) #23	MTX3 (ENSCLAG00000011076) #25	THBS4 (ENSCLAG00000009452) #26	CCAR1 (ENSCLAG00000011807)	SLC25A16 (ENSCLAG00000015512)	DNA2 (ENSCLAG00000012086)	RUFY2 (ENSCLAG00000012405)	HNRNPH3 (ENSCLAG00000010680)	PBLD (ENSCLAG00000010284)	ENSCLAG00000014026	MYPN (ENSCLAG00000011004)	HERC4 (ENSCLAG00000016138)	SIRT1 (ENSCLAG00000015502)	DNAJC12 (ENSCLAG00000012847)	LRRTM3 (ENSCLAG00000011661)
Naked mole-rat female	MODERN SPECIES	7	OTP (ENSHGLG00000003908) #11	ENSHGLG00000000425 #12	ENSHGLG00000019786	AP3B1 (ENSHGLG00000001480) #13	SCAMP1 (ENSHGLG00000048514) #14	ENSHGLG00000035099	ENSHGLG00000040355	ENSHGLG00000000380	ARSB (ENSHGLG00000000586) #16	DMGDH (ENSHGLG00000000837) #17	BHMT2 (ENSHGLG00000036952) #18	BHMT (ENSHGLG00000050585) #19	ENSHGLG00000045617	JMY (ENSHGLG00000002781) #20	HOMER1 (ENSHGLG00000001109) #21	TENT2 (ENSHGLG00000008742) #22	CMYA5 (ENSHGLG00000011995) #23	MTX3 (ENSHGLG00000034356) #25	ENSHGLG00000041734	ENSHGLG00000002153 #26	ENSHGLG00000019982	ENSHGLG00000045404	ENSHGLG00000025275	ENSHGLG00000034932	ENSHGLG00000034451	ENSHGLG00000045248	ENSHGLG00000020952	ENSHGLG00000037791	ENSHGLG00000008456	ENSHGLG00000008417	ENSHGLG00000032865
Sciuridae	ANCESTRAL SPECIES	18	ENSGT00730000111121	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949.f #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Marmotini	ANCESTRAL SPECIES	23	ENSGT00730000111121	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00530000063681.b.a #30	ENSGT00390000012355.A.a #31	ENSGT00390000010283 #32	ENSGT00550000074949.f #33	ENSGT00940000155679 #34	ENSGT00950000182772.B.a.a #35	ENSGT00950000183041.C #36	ENSGT00940000160328 #37	ENSGT00950000183049.A
Alpin marmot	MODERN SPECIES	48	ENSMMMG00000003082	AGGF1 (ENSMMMG00000003093)	ZBED3 (ENSMMMG00000003120) #7	PDE8B (ENSMMMG00000003165) #8	WDR41 (ENSMMMG00000003481) #9	TBCA (ENSMMMG00000003516) #12	AP3B1 (ENSMMMG00000003600) #13	SCAMP1 (ENSMMMG00000006853) #14	LHFPL2 (ENSMMMG00000006878) #15	ARSB (ENSMMMG00000006892) #16	DMGDH (ENSMMMG00000006902) #17	BHMT2 (ENSMMMG00000006929) #18	BHMT (ENSMMMG00000006936) #19	JMY (ENSMMMG00000006956) #20	HOMER1 (ENSMMMG00000006979) #21	TENT2 (ENSMMMG00000007231) #22	CMYA5 (ENSMMMG00000007285) #23	MTX3 (ENSMMMG00000007317) #25	THBS4 (ENSMMMG00000007323) #26	SERINC5 (ENSMMMG00000007357) #27	ENSMMMG00000007362 #28	ENSMMMG00000007367 #29	FAM151B (ENSMMMG00000007697) #30	ANKRD34B (ENSMMMG00000007710) #31	ENSMMMG00000007718 #32	MSH3 (ENSMMMG00000007726) #33	ENSMMMG00000007796 #34	CKMT2 (ENSMMMG00000007828) #35	ZCCHC9 (ENSMMMG00000007846) #36	ACOT12 (ENSMMMG00000007863) #37	SSBP2 (ENSMMMG00000007897)
Marmotini_b	ANCESTRAL SPECIES	92	ENSGT00730000111121	ENSGT00940000164103 #7	ENSGT00940000157817 #8	ENSGT00390000017026.c #9	ENSGT00940000159952 #11	ENSGT00390000009710 #12	ENSGT00940000157603 #13	ENSGT00940000157310 #14	ENSGT00990000203589.b.b #15	ENSGT00940000158270 #16	ENSGT00940000158176 #17	ENSGT00390000003122.c.b #18	ENSGT00390000003122.c.a #19	ENSGT00510000046704.b.a #20	ENSGT00940000156354 #21	ENSGT00940000156640 #22	ENSGT00940000159696 #23	ENSGT00950000182919.B.b #25	ENSGT00940000155227 #26	ENSGT01030000234623.a.b.a #27	ENSGT00950000182767.a.b.b #28	ENSGT00940000154290.b #29	ENSGT00960000189962
Squirrel	MODERN SPECIES	149	AGGF1 (ENSSTOG00000021590)	ZBED3 (ENSSTOG00000003989) #7	PDE8B (ENSSTOG00000001468) #8	WDR41 (ENSSTOG00000028633) #9	OTP (ENSSTOG00000007544) #11	TBCA (ENSSTOG00000009840) #12	AP3B1 (ENSSTOG00000014099) #13	SCAMP1 (ENSSTOG00000023531) #14	LHFPL2 (ENSSTOG00000004457) #15	ARSB (ENSSTOG00000005818) #16	DMGDH (ENSSTOG00000005837) #17	BHMT2 (ENSSTOG00000005871) #18	BHMT (ENSSTOG00000005887) #19	JMY (ENSSTOG00000021490) #20	HOMER1 (ENSSTOG00000003164) #21	TENT2 (ENSSTOG00000027293) #22	MTX3 (ENSSTOG00000023002) #25	THBS4 (ENSSTOG00000009080) #26	SERINC5 (ENSSTOG00000009098) #27	ENSSTOG00000025704 #29
Eurasian red squirrel	MODERN SPECIES	15	PDE8B (ENSSVLG00005004357) #8	WDR41 (ENSSVLG00005014989) #9	OTP (ENSSVLG00005014921) #11	TBCA (ENSSVLG00005014739) #12	AP3B1 (ENSSVLG00005014385) #13	SCAMP1 (ENSSVLG00005014260) #14	LHFPL2 (ENSSVLG00005014202) #15	ARSB (ENSSVLG00005013953) #16	DMGDH (ENSSVLG00005013801) #17	BHMT2 (ENSSVLG00005013681) #18	ENSSVLG00005013529	BHMT (ENSSVLG00005013463) #19	JMY (ENSSVLG00005013142) #20	ENSSVLG00005013053	HOMER1 (ENSSVLG00005012639) #21	TENT2 (ENSSVLG00005012556) #22	CMYA5 (ENSSVLG00005012391) #23	MTX3 (ENSSVLG00005012299) #25	THBS4 (ENSSVLG00005011815) #26	SERINC5 (ENSSVLG00005011745) #27	ENSSVLG00005011728 #28	ENSSVLG00005011673 #29	FAM151B (ENSSVLG00005011621) #30	ENSSVLG00005011570	ANKRD34B (ENSSVLG00005011548) #31	ENSSVLG00005011452 #32	MSH3 (ENSSVLG00005010940) #33	RASGRF2 (ENSSVLG00005010807) #34	CKMT2 (ENSSVLG00005010620) #35	ZCCHC9 (ENSSVLG00005010577) #36	ACOT12 (ENSSVLG00005010445) #37