Hystricomorpha	ANCESTRAL SPECIES	26	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861 #18	ENSGT00530000063371.A #19	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043.f #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #30	ENSGT00940000160120 #31	ENSGT00940000157217 #32	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00940000164052 #36	ENSGT00510000046908.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	23	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861 #18	ENSGT00530000063371.A #19	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043.f #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #30	ENSGT00940000160120 #31	ENSGT00940000157217 #32	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00940000164052 #36	ENSGT00390000002216 #37
Hystricomorpha_b	ANCESTRAL SPECIES	37	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861 #18	ENSGT00530000063371.A #19	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043.f #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #30	ENSGT00940000160120 #31	ENSGT00940000157217 #32	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00940000164052 #36	ENSGT00390000002216 #37
Long-tailed chinchilla	MODERN SPECIES	221	TMEM175 (ENSCLAG00000010483) #7	DGKQ (ENSCLAG00000011985) #8	SLC26A1 (ENSCLAG00000006725) #9	IDUA (ENSCLAG00000011871) #10	FGFRL1 (ENSCLAG00000007552) #11	ENSCLAG00000008587 #12	ENSCLAG00000010654 #13	SPON2 (ENSCLAG00000006806) #14	CTBP1 (ENSCLAG00000008653) #15	MAEA (ENSCLAG00000013403) #16	UVSSA (ENSCLAG00000008812) #17	ENSCLAG00000007213 #18	FAM53A (ENSCLAG00000007294) #19	SLBP (ENSCLAG00000008157) #20	TMEM129 (ENSCLAG00000010127) #21	TACC3 (ENSCLAG00000011683) #22	FGFR3 (ENSCLAG00000006986) #23	LETM1 (ENSCLAG00000010785) #24	NSD2 (ENSCLAG00000014450) #25	NELFA (ENSCLAG00000012299) #26	C4orf48 (ENSCLAG00000009344) #27	ENSCLAG00000009488 #28	POLN (ENSCLAG00000010355) #29	HAUS3 (ENSCLAG00000010866) #30	MXD4 (ENSCLAG00000011445) #31	ZFYVE28 (ENSCLAG00000009540) #32	CFAP99 (ENSCLAG00000012930) #33	RNF4 (ENSCLAG00000014072) #34	FAM193A (ENSCLAG00000014296) #35	ENSCLAG00000006931 #36	SH3BP2 (ENSCLAG00000008009) #37
Degu	MODERN SPECIES	47	TMEM175 (ENSODEG00000013374) #7	DGKQ (ENSODEG00000012712) #8	SLC26A1 (ENSODEG00000015117) #9	IDUA (ENSODEG00000012062) #10	FGFRL1 (ENSODEG00000011612) #11	ENSODEG00000012265 #12	ENSODEG00000012726 #13	SPON2 (ENSODEG00000012066) #14	ENSODEG00000013011 #15	MAEA (ENSODEG00000012556) #16	UVSSA (ENSODEG00000011757) #17	FAM53A (ENSODEG00000011180) #19	ENSODEG00000012272	SLBP (ENSODEG00000012641) #20	ENSODEG00000011155 #21	ENSODEG00000012973 #22	ENSODEG00000012582 #23	LETM1 (ENSODEG00000012866) #24	NSD2 (ENSODEG00000012080) #25	NELFA (ENSODEG00000011122) #26	C4orf48 (ENSODEG00000011093) #27	ENSODEG00000011723 #28	ENSODEG00000011259	POLN (ENSODEG00000011265) #29	HAUS3 (ENSODEG00000011986) #30	MXD4 (ENSODEG00000011512) #31	ENSODEG00000011568 #32	CFAP99 (ENSODEG00000011882) #33	RNF4 (ENSODEG00000011133) #34	ENSODEG00000010562	FAM193A (ENSODEG00000010949) #35
Guinea pig	MODERN SPECIES	24													FAM53A (ENSCPOG00000033116) #19	SLBP (ENSCPOG00000000031) #20	TMEM129 (ENSCPOG00000000032) #21	TACC3 (ENSCPOG00000023531) #22	FGFR3 (ENSCPOG00000025595) #23	LETM1 (ENSCPOG00000011337) #24	NSD2 (ENSCPOG00000007513) #25	NELFA (ENSCPOG00000019715) #26	C4orf48 (ENSCPOG00000031206) #27	ENSCPOG00000038761 #28	POLN (ENSCPOG00000001665) #29	HAUS3 (ENSCPOG00000021994) #30	MXD4 (ENSCPOG00000022492) #31	ZFYVE28 (ENSCPOG00000027392) #32	CFAP99 (ENSCPOG00000040209) #33	RNF4 (ENSCPOG00000030545) #34	FAM193A (ENSCPOG00000004013) #35	ENSCPOG00000024404 #36	SH3BP2 (ENSCPOG00000009421) #37
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	1	AMTN (ENSHGLG00000003589)	ENSHGLG00000045507	ODAM (ENSHGLG00000001598)	ENSHGLG00000038103	ENSHGLG00000028349	SULT1E1 (ENSHGLG00000000404)	ENSHGLG00000000269	ENSHGLG00000003092	ENSHGLG00000002184	ENSHGLG00000047874	ENSHGLG00000002082	ENSHGLG00000001108	ENSHGLG00000006663 #19	ENSHGLG00000005955 #20	TMEM129 (ENSHGLG00000046034) #21	ENSHGLG00000004881 #22	FGFR3 (ENSHGLG00000004816) #23	LETM1 (ENSHGLG00000004719) #24	ENSHGLG00000044127	NELFA (ENSHGLG00000004622) #26	ENSHGLG00000020481	ENSHGLG00000010063 ##27	POLN (ENSHGLG00000009000) #29	HAUS3 (ENSHGLG00000051007) #30	ENSHGLG00000047915	RNF4 (ENSHGLG00000046605) #34	ENSHGLG00000006269	ENSHGLG00000037168	TNIP2 (ENSHGLG00000005230)	SH3BP2 (ENSHGLG00000005188) #37	ADD1 (ENSHGLG00000005103)
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000019892	ENSHGLG00000047327	ENSHGLG00000044426	ENSHGLG00000041060	ENSHGLG00000038259	ENSHGLG00000046083	ENSHGLG00000000188	ENSHGLG00000007029	ENSHGLG00000042678	ENSHGLG00000032834	ENSHGLG00000037631	ENSHGLG00000000175	ENSHGLG00000038645	ENSHGLG00000034367	ENSHGLG00000042766	ENSHGLG00000032924 #22	ENSHGLG00000000161	ENSHGLG00000032127	ENSHGLG00000039781	PABPC5 (ENSHGLG00000047468)	ENSHGLG00000035133	ENSHGLG00000000267	ENSHGLG00000020027	ENSHGLG00000032760	ENSHGLG00000044864	ENSHGLG00000000237	ENSHGLG00000051013	ENSHGLG00000000569	ENSHGLG00000046264	ENSHGLG00000014839	ENSHGLG00000049697