Sarcopterygii	ANCESTRAL SPECIES	146	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000009871	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00390000011904 #31	ENSGT00940000159015 #29	ENSGT00910000148102	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Amniota	ANCESTRAL SPECIES	2	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Mammalia	ANCESTRAL SPECIES	1	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Theria	ANCESTRAL SPECIES	6	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00510000047107.B	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Eutheria	ANCESTRAL SPECIES	2	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000165250	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Artiodactyla_b	ANCESTRAL SPECIES	30	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES	15	ENSGT00950000182938.b.b.b.a	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858.a #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Percora_a	ANCESTRAL SPECIES	18	ENSGT00950000182938.b.b.b.a	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858.a #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Bovidae	ANCESTRAL SPECIES	18	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858.a #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Bovinae	ANCESTRAL SPECIES	15	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858.a #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Bos	ANCESTRAL SPECIES	15	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858.a #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Bos_a	ANCESTRAL SPECIES	61	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00990000210994 #10	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT01100000263480.a.a.a.a.b.a.a.a.b.a.b #18	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858.a #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Domestic yak	MODERN SPECIES	25	SLC26A1 (ENSBGRG00000019694) #7	IDUA (ENSBGRG00000019585) #8	FGFRL1 (ENSBGRG00000019493) #9	ENSBGRG00000019433 #10	ENSBGRG00000019312 #11	ENSBGRG00000019257 #12	ENSBGRG00000019141 #13	ENSBGRG00000018881 #14	MAEA (ENSBGRG00000018651) #15	UVSSA (ENSBGRG00000018583) #16	NKX1-1 (ENSBGRG00000018511) #17	ENSBGRG00000018496 #18	ENSBGRG00000018427 #19	SLBP (ENSBGRG00000018109) #20	TMEM129 (ENSBGRG00000017981) #21	TACC3 (ENSBGRG00000017804) #22	FGFR3 (ENSBGRG00000017575) #23	LETM1 (ENSBGRG00000017241) #24	ENSBGRG00000017205 #25	NELFA (ENSBGRG00000017020) #26	C4orf48 (ENSBGRG00000016955) #27	ENSBGRG00000016908 #28	POLN (ENSBGRG00000016638) #29	ENSBGRG00000016598 #30	HAUS3 (ENSBGRG00000016524) #31	ENSBGRG00000016319 #32	ENSBGRG00000016224 #33	ENSBGRG00000016089 #34	CFAP99 (ENSBGRG00000015852) #35	RNF4 (ENSBGRG00000015725) #36	FAM193A (ENSBGRG00000015247) #37
Wild yak	MODERN SPECIES	798										MAEA (ENSBMUG00000021584) #15	UVSSA (ENSBMUG00000021556) #16	ENSBMUG00000021513 #19	ENSBMUG00000021511	SLBP (ENSBMUG00000021468) #20	TMEM129 (ENSBMUG00000021381) #21	TACC3 (ENSBMUG00000021368) #22	FGFR3 (ENSBMUG00000020745) #23	LETM1 (ENSBMUG00000019981) #24	NSD2 (ENSBMUG00000019910) #25	NELFA (ENSBMUG00000019729) #26	POLN (ENSBMUG00000019557) #29	ENSBMUG00000019531
Bos_b	ANCESTRAL SPECIES	14	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00390000001735.e.b	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858.a #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Hybrid Bos Indicus	MODERN SPECIES	25	GAK (ENSBIXG00005008079)	TMEM175 (ENSBIXG00005008181)	DGKQ (ENSBIXG00005008250)	SLC26A1 (ENSBIXG00005006076) #7	IDUA (ENSBIXG00005008330) #8	FGFRL1 (ENSBIXG00005008365) #9	ENSBIXG00005008383	ENSBIXG00005005681 #12	SPON2 (ENSBIXG00005006081) #13	CTBP1 (ENSBIXG00005008435) #14	MAEA (ENSBIXG00005008499) #15	UVSSA (ENSBIXG00005008522) #16	NKX1-1 (ENSBIXG00005008534) #17	ENSBIXG00005008565 #20	TMEM129 (ENSBIXG00005000225) #21	TACC3 (ENSBIXG00005008616) #22	FGFR3 (ENSBIXG00005008663) #23	LETM1 (ENSBIXG00005008685) #24	NSD2 (ENSBIXG00005008768) #25	NELFA (ENSBIXG00005008819) #26	C4orf48 (ENSBIXG00005006404) #27	NAT8L (ENSBIXG00005008838) #28	ENSBIXG00005006191	POLN (ENSBIXG00005000322) #29	ENSBIXG00005008965 #31	MXD4 (ENSBIXG00005008980) #32	ENSBIXG00005009002 #33	ENSBIXG00005009025 #33	CFAP99 (ENSBIXG00005009067) #35	RNF4 (ENSBIXG00005005461) #36	FAM193A (ENSBIXG00005009399) #37
Cow	MODERN SPECIES	25	TMEM175 (ENSBTAG00000018379)	DGKQ (ENSBTAG00000017240)	SLC26A1 (ENSBTAG00000007001) #7	IDUA (ENSBTAG00000007002) #8	FGFRL1 (ENSBTAG00000027464) #9	ENSBTAG00000049784	ENSBTAG00000002247 #12	SPON2 (ENSBTAG00000004261) #13	CTBP1 (ENSBTAG00000008480) #14	MAEA (ENSBTAG00000012575) #15	UVSSA (ENSBTAG00000012577) #16	NKX1-1 (ENSBTAG00000048789) #17	ENSBTAG00000048974 #18	SLBP (ENSBTAG00000001328) #20	TMEM129 (ENSBTAG00000011042) #21	TACC3 (ENSBTAG00000011044) #22	FGFR3 (ENSBTAG00000007164) #23	LETM1 (ENSBTAG00000020108) #24	NSD2 (ENSBTAG00000007986) #25	NELFA (ENSBTAG00000017921) #26	C6H4orf48 (ENSBTAG00000031395) #27	ENSBTAG00000053874 #28	POLN (ENSBTAG00000017296) #29	HAUS3 (ENSBTAG00000024787) #31	MXD4 (ENSBTAG00000015209) #32	ZFYVE28 (ENSBTAG00000006683) #33	CFAP99 (ENSBTAG00000054376) #35	RNF4 (ENSBTAG00000027453) #36	FAM193A (ENSBTAG00000009744) #37	TNIP2 (ENSBTAG00000015126)	SH3BP2 (ENSBTAG00000013996)
American bison	MODERN SPECIES	1497														SLBP (ENSBBBG00000023644) #20	TMEM129 (ENSBBBG00000023618) #21	ENSBBBG00000023610 #22
Caprinae	ANCESTRAL SPECIES	13	ENSGT00950000182938.b.b.b.a	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858.a #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.k #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Rambouillet Sheep	MODERN SPECIES	22	ENSOARG00020011547	ENSOARG00020011415	TMEM175 (ENSOARG00020011312)	DGKQ (ENSOARG00020011039)	SLC26A1 (ENSOARG00020011004) #7	IDUA (ENSOARG00020010816) #8	FGFRL1 (ENSOARG00020010713) #9	ENSOARG00020010628 #12	SPON2 (ENSOARG00020010589) #13	CTBP1 (ENSOARG00020010402) #14	MAEA (ENSOARG00020009920) #15	UVSSA (ENSOARG00020009863) #16	NKX1-1 (ENSOARG00020009848) #17	SLBP (ENSOARG00020023875) #20	TMEM129 (ENSOARG00020023839) #21	ENSOARG00020023797 #22	FGFR3 (ENSOARG00020023492) #23	LETM1 (ENSOARG00020023387) #24	NSD2 (ENSOARG00020023148) #25	NELFA (ENSOARG00020023088) #26	C4orf48 (ENSOARG00020023033) #27	NAT8L (ENSOARG00020023001) #28	ENSOARG00020022986	POLN (ENSOARG00020022890) #29	HAUS3 (ENSOARG00020022851) #31	MXD4 (ENSOARG00020022801) #32	ENSOARG00020022734 #33	ENSOARG00020022674 #33	CFAP99 (ENSOARG00020022601) #35	RNF4 (ENSOARG00020022503) #36	FAM193A (ENSOARG00020022278) #37
Goat	MODERN SPECIES	25	FAM193A (ENSCHIG00000022591) #37	RNF4 (ENSCHIG00000003435) #36	CFAP99 (ENSCHIG00000015798) #35	ZFYVE28 (ENSCHIG00000011539) #33	MXD4 (ENSCHIG00000024119) #32	ENSCHIG00000014089 #31	ENSCHIG00000007680	NAT8L (ENSCHIG00000015781) #28	C4orf48 (ENSCHIG00000002106) #27	NELFA (ENSCHIG00000018283) #26	NSD2 (ENSCHIG00000009431) #25	LETM1 (ENSCHIG00000019054) #24	ENSCHIG00000013237	TMEM129 (ENSCHIG00000024846) #21	SLBP (ENSCHIG00000019364) #20	ENSCHIG00000013117 #22	HGFAC (ENSCHIG00000026186)	RGS12 (ENSCHIG00000019778)	LRPAP1 (ENSCHIG00000012569)	ENSCHIG00000024026	ADRA2C (ENSCHIG00000008674)	HMX1 (ENSCHIG00000012036)	CPZ (ENSCHIG00000022665)	TRMT44 (ENSCHIG00000019204)	ENSCHIG00000004823	ACOX3 (ENSCHIG00000015179)	HTRA3 (ENSCHIG00000023003)	SH3TC1 (ENSCHIG00000009657)	ABLIM2 (ENSCHIG00000019315)	AFAP1 (ENSCHIG00000006390)	ENSCHIG00000018509
Siberian musk deer	MODERN SPECIES	354	ENSMMSG00000010270	ENSMMSG00000010313	TMEM175 (ENSMMSG00000010338)	DGKQ (ENSMMSG00000010406)	IDUA (ENSMMSG00000010506) #8	SLC26A1 (ENSMMSG00000010599) #7	FGFRL1 (ENSMMSG00000010628) #9	ENSMMSG00000010668 #12	SPON2 (ENSMMSG00000010709) #13	CTBP1 (ENSMMSG00000010749) #14	MAEA (ENSMMSG00000010850) #15	UVSSA (ENSMMSG00000011083) #16	NKX1-1 (ENSMMSG00000011124) #17	SLBP (ENSMMSG00000011149) #20	TMEM129 (ENSMMSG00000011303) #21	ENSMMSG00000011328 #22	FGFR3 (ENSMMSG00000011411) #23	LETM1 (ENSMMSG00000011470) #24	NSD2 (ENSMMSG00000011600) #25	NELFA (ENSMMSG00000011766) #26	C4orf48 (ENSMMSG00000011837) #27	NAT8L (ENSMMSG00000011858) #28	POLN (ENSMMSG00000011904) #29	HAUS3 (ENSMMSG00000011973) #31	MXD4 (ENSMMSG00000012003) #32	ENSMMSG00000012038 #33	ENSMMSG00000012065 #33	CFAP99 (ENSMMSG00000012099) #35	RNF4 (ENSMMSG00000015797) #36	FAM193A (ENSMMSG00000015827) #37	TNIP2 (ENSMMSG00000015869)
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	3	ENSCHYG00000009566	TMED8 (ENSCHYG00000009895)	ENSCHYG00000009939	NOXRED1 (ENSCHYG00000009984)	VIPAS39 (ENSCHYG00000010129)	AHSA1 (ENSCHYG00000011350)	SPTLC2 (ENSCHYG00000011431)	ALKBH1 (ENSCHYG00000011528)	ENSCHYG00000011584	SNW1 (ENSCHYG00000011666)	ADCK1 (ENSCHYG00000011807)	NRXN3 (ENSCHYG00000011979)	ENSCHYG00000013000	ENSCHYG00000013020	CEP128 (ENSCHYG00000013062)	ENSCHYG00000013517 #22	TSHR (ENSCHYG00000013561)	GTF2A1 (ENSCHYG00000013875)	STON2 (ENSCHYG00000013987)	SEL1L (ENSCHYG00000014129)	ENSCHYG00000014325	FLRT2 (ENSCHYG00000014379)	ENSCHYG00000014392	ENSCHYG00000014421	GALC (ENSCHYG00000014473)	GPR65 (ENSCHYG00000014874)	KCNK10 (ENSCHYG00000014917)	SPATA7 (ENSCHYG00000015292)	PTPN21 (ENSCHYG00000015537)	ENSCHYG00000015707	EML5 (ENSCHYG00000016433)
Yarkand deer	MODERN SPECIES	29	CPLX1 (ENSCHYG00000000642)	GAK (ENSCHYG00000000449)	TMEM175 (ENSCHYG00000000372)	DGKQ (ENSCHYG00000000312)	SLC26A1 (ENSCHYG00000000284) #7	ENSCHYG00000000225 #8	FGFRL1 (ENSCHYG00000000201) #9	ENSCHYG00000000191 #12	SPON2 (ENSCHYG00000026323) #13	ENSCHYG00000026312	CTBP1 (ENSCHYG00000026282) #14	MAEA (ENSCHYG00000026208) #15	UVSSA (ENSCHYG00000026183) #16	SLBP (ENSCHYG00000026159) #20	TMEM129 (ENSCHYG00000026136) #21	ENSCHYG00000026110 #22	ENSCHYG00000026079 #23	LETM1 (ENSCHYG00000026028) #24	ENSCHYG00000025972 #25	NELFA (ENSCHYG00000025867) #26	NAT8L (ENSCHYG00000025851) #28	POLN (ENSCHYG00000025750) #29	HAUS3 (ENSCHYG00000025719) #31	ENSCHYG00000025702 #33	ENSCHYG00000025686	CFAP99 (ENSCHYG00000025667) #35	RNF4 (ENSCHYG00000025555) #36	ENSCHYG00000025523	FAM193A (ENSCHYG00000025484) #37	TNIP2 (ENSCHYG00000025444)	SH3BP2 (ENSCHYG00000025298)
Pecora	ANCESTRAL SPECIES																	ENSGT00940000158858.b ##22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000158858.b ##22
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000158858.b ##22
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000158858.b ##22
Bos	ANCESTRAL SPECIES																	ENSGT00940000158858.b ##22
Bos_b	ANCESTRAL SPECIES																	ENSGT00940000158858.b ##22
Cow	DUPLICATION
Cow	MODERN SPECIES	14																ENSBTAG00000053760 ##22	ENSBTAG00000049586	MRPS24 (ENSBTAG00000007398)	URGCP (ENSBTAG00000009453)	UBE2D4 (ENSBTAG00000003997)	DBNL (ENSBTAG00000017547)	PGAM2 (ENSBTAG00000014547)	VOPP1 (ENSBTAG00000012073)	LANCL2 (ENSBTAG00000018026)	EGFR (ENSBTAG00000011628)	SEC61G (ENSBTAG00000014971)	NEK10 (ENSBTAG00000000220)	SLC4A7 (ENSBTAG00000018227)	EOMES (ENSBTAG00000016920)	CMC1 (ENSBTAG00000035286)	AZI2 (ENSBTAG00000004117)
Cow	MODERN SPECIES	12	GABRP (ENSBTAG00000002779)	KCNIP1 (ENSBTAG00000002865)	KCNMB1 (ENSBTAG00000002985)	LCP2 (ENSBTAG00000009381)	FOXI1 (ENSBTAG00000014620)	INSYN2B (ENSBTAG00000002134)	DOCK2 (ENSBTAG00000014612)	SPDL1 (ENSBTAG00000008180)	SLIT3 (ENSBTAG00000017746)	PANK3 (ENSBTAG00000011895)	SPZ1 (ENSBTAG00000024593)	OR5I1FP (ENSBTAG00000000617)	ENSBTAG00000047333	ENSBTAG00000045579	ENSBTAG00000045666	ENSBTAG00000052135 ##22
American bison	MODERN SPECIES	3257																ENSBBBG00000024163 ##22	ENSBBBG00000006287	SPZ1 (ENSBBBG00000008701)	PANK3 (ENSBBBG00000008986)	SLIT3 (ENSBBBG00000024241)	SPDL1 (ENSBBBG00000024260)	INSYN2B (ENSBBBG00000024274)	DOCK2 (ENSBBBG00000006373)	FOXI1 (ENSBBBG00000000270)	C5orf58 (ENSBBBG00000024487)	LCP2 (ENSBBBG00000009034)	KCNMB1 (ENSBBBG00000008210)	KCNIP1 (ENSBBBG00000000215)	GABRP (ENSBBBG00000000159)	ENSBBBG00000006511	TAFA4 (ENSBBBG00000024801)
Siberian musk deer	MODERN SPECIES	339	ASB17 (ENSMMSG00000011928)	ST6GALNAC3 (ENSMMSG00000011892)	ST6GALNAC5 (ENSMMSG00000011878)	PIGK (ENSMMSG00000011800)	AK5 (ENSMMSG00000011685)	ZZZ3 (ENSMMSG00000011593)	USP33 (ENSMMSG00000011272)	MIGA1 (ENSMMSG00000010968)	NEXN (ENSMMSG00000010876)	ENSMMSG00000010797	DNAJB4 (ENSMMSG00000010765)	GIPC2 (ENSMMSG00000010713)	ENSMMSG00000010696	ENSMMSG00000010641	PTGFR (ENSMMSG00000010621)	ENSMMSG00000010598 ##22	ADGRL4 (ENSMMSG00000010416)	ENSMMSG00000010359	ENSMMSG00000010349	ADGRL2 (ENSMMSG00000010108)	ENSMMSG00000009992	ENSMMSG00000009973	TTLL7 (ENSMMSG00000009936)	PRKACB (ENSMMSG00000007994)	SAMD13 (ENSMMSG00000007874)	ENSMMSG00000007862	ENSMMSG00000007774	DNASE2B (ENSMMSG00000007733)	ENSMMSG00000007703	ENSMMSG00000007684	ENSMMSG00000007667
Cetacea	ANCESTRAL SPECIES	12	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000154158.k.b	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00550000074784.a.b	ENSGT01030000234916	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36
Odontoceti_a	ANCESTRAL SPECIES	22	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000154158.k.b	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.r #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00550000074784.a.b	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000154158.k.b	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.r #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00550000074784.a.b	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000154158.k.b	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.r #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00550000074784.a.b	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Narwhal	MODERN SPECIES	307	TMEM175 (ENSMMNG00015009155)	DGKQ (ENSMMNG00015009133)	SLC26A1 (ENSMMNG00015009113) #7	IDUA (ENSMMNG00015009092) #8	FGFRL1 (ENSMMNG00015009082) #9	ENSMMNG00015009070 #12	SPON2 (ENSMMNG00015009059) #13	CTBP1 (ENSMMNG00015009032) #14	ENSMMNG00015009007	MAEA (ENSMMNG00015008969) #15	UVSSA (ENSMMNG00015008918) #16	NKX1-1 (ENSMMNG00015008894) #17	FAM53A (ENSMMNG00015008881)	SLBP (ENSMMNG00015008857) #20	TMEM129 (ENSMMNG00015008823) #21	TACC3 (ENSMMNG00015008798) #22	FGFR3 (ENSMMNG00015008748) #23	LETM1 (ENSMMNG00015008712) #24	ENSMMNG00015008696	NSD2 (ENSMMNG00015008622) #25	NELFA (ENSMMNG00015008560) #26	C4orf48 (ENSMMNG00015008532) #27	ENSMMNG00015008518 #28	POLN (ENSMMNG00015008466) #29	HAUS3 (ENSMMNG00015008433) #31	MXD4 (ENSMMNG00015008416) #32	ENSMMNG00015008390 #33	ENSMMNG00015008379 #33	CFAP99 (ENSMMNG00015008357) #35	RNF4 (ENSMMNG00015008314) #36	FAM193A (ENSMMNG00015008181) #37
Beluga whale	MODERN SPECIES	77	TMEM175 (ENSDLEG00000016926)	DGKQ (ENSDLEG00000016886)	SLC26A1 (ENSDLEG00000016873) #7	IDUA (ENSDLEG00000016854) #8	FGFRL1 (ENSDLEG00000016841) #9	ENSDLEG00000016829 #12	SPON2 (ENSDLEG00000016801) #13	CTBP1 (ENSDLEG00000016785) #14	ENSDLEG00000016755	MAEA (ENSDLEG00000016731) #15	UVSSA (ENSDLEG00000016715) #16	NKX1-1 (ENSDLEG00000016706) #17	FAM53A (ENSDLEG00000016696)	SLBP (ENSDLEG00000016673) #20	TMEM129 (ENSDLEG00000016657) #21	ENSDLEG00000016641 #22	FGFR3 (ENSDLEG00000016588) #23	LETM1 (ENSDLEG00000016566) #24	ENSDLEG00000016553	NSD2 (ENSDLEG00000016523) #25	NELFA (ENSDLEG00000016475) #26	C4orf48 (ENSDLEG00000016453) #27	NAT8L (ENSDLEG00000016443) #28	POLN (ENSDLEG00000016047) #29	HAUS3 (ENSDLEG00000016006) #31	MXD4 (ENSDLEG00000015987) #32	ENSDLEG00000015973	ENSDLEG00000015957 #33	CFAP99 (ENSDLEG00000015790) #35	RNF4 (ENSDLEG00000015767) #36	FAM193A (ENSDLEG00000015632) #37
Dolphin	MODERN SPECIES	2008													ENSTTRG00000010877	ENSTTRG00000010901 #20	TMEM129 (ENSTTRG00000010917) #21	TACC3 (ENSTTRG00000010930) #22	ENSTTRG00000010941 #23	LETM1 (ENSTTRG00000010947) #24
Sperm whale	MODERN SPECIES	18	GAK (ENSPCTG00005007907)	CPLX1 (ENSPCTG00005007813)	PCGF3 (ENSPCTG00005007779)	ENSPCTG00005007664 #8	FGFRL1 (ENSPCTG00005007637) #9	ENSPCTG00005007620 #12	SPON2 (ENSPCTG00005007593) #13	CTBP1 (ENSPCTG00005007566) #14	ENSPCTG00005007552	MAEA (ENSPCTG00005007348) #15	UVSSA (ENSPCTG00005007289) #16	NKX1-1 (ENSPCTG00005007269) #17	FAM53A (ENSPCTG00005007252)	SLBP (ENSPCTG00005007183) #20	TMEM129 (ENSPCTG00005007122) #21	TACC3 (ENSPCTG00005007081) #22	FGFR3 (ENSPCTG00005006670) #23	LETM1 (ENSPCTG00005006566) #24	ENSPCTG00005006543	ENSPCTG00005006514	NSD2 (ENSPCTG00005006400) #25	NELFA (ENSPCTG00005006320) #26	ENSPCTG00005006283 #27	NAT8L (ENSPCTG00005006259) #28	ENSPCTG00005006248	POLN (ENSPCTG00005006144) #29	HAUS3 (ENSPCTG00005006113) #31	ENSPCTG00005019696	MXD4 (ENSPCTG00005019644) #32	ENSPCTG00005019596 #33	ENSPCTG00005019514 #33
Blue whale	MODERN SPECIES	16	GAK (ENSBMSG00010010498)	TMEM175 (ENSBMSG00010010458)	DGKQ (ENSBMSG00010010384)	SLC26A1 (ENSBMSG00010010350) #7	IDUA (ENSBMSG00010010336) #8	FGFRL1 (ENSBMSG00010010322) #9	ENSBMSG00010010309 #12	CTBP1 (ENSBMSG00010010280) #14	MAEA (ENSBMSG00010010210) #15	UVSSA (ENSBMSG00010010170) #16	NKX1-1 (ENSBMSG00010010159) #17	FAM53A (ENSBMSG00010010143)	SLBP (ENSBMSG00010010021) #20	TMEM129 (ENSBMSG00010009983) #21	ENSBMSG00010009968	ENSBMSG00010009945 #22	FGFR3 (ENSBMSG00010009892) #23	LETM1 (ENSBMSG00010009849) #24	ENSBMSG00010009841	ENSBMSG00010009831 #25	ENSBMSG00010009815 #25	NELFA (ENSBMSG00010009791) #26	C4orf48 (ENSBMSG00010009769) #27	NAT8L (ENSBMSG00010009755) #28	POLN (ENSBMSG00010009707) #29	HAUS3 (ENSBMSG00010009672) #31	MXD4 (ENSBMSG00010009650) #32	ENSBMSG00010009628 #33	CFAP99 (ENSBMSG00010009605) #35	RNF4 (ENSBMSG00010009582) #36	FAM193A (ENSBMSG00010009552) #37
Camelidae	ANCESTRAL SPECIES	22	ENSGT00950000182938.b.b.b.a	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT01100000267033	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Arabian camel	MODERN SPECIES	11	CPLX1 (ENSCDRG00005006266)	GAK (ENSCDRG00005006048)	TMEM175 (ENSCDRG00005005998)	DGKQ (ENSCDRG00005005859)	SLC26A1 (ENSCDRG00005005838) #7	IDUA (ENSCDRG00005005765) #8	FGFRL1 (ENSCDRG00005005733) #9	ENSCDRG00005005690 #12	SPON2 (ENSCDRG00005005679) #13	CTBP1 (ENSCDRG00005005616) #14	MAEA (ENSCDRG00005005461) #15	UVSSA (ENSCDRG00005005400) #16	NKX1-1 (ENSCDRG00005005367) #17	SLBP (ENSCDRG00005005313) #20	TMEM129 (ENSCDRG00005005274) #21	TACC3 (ENSCDRG00005005231) #22	LETM1 (ENSCDRG00005005053) #24	ENSCDRG00005005023 #25	ENSCDRG00005004993	NELFA (ENSCDRG00005004890) #26	C4orf48 (ENSCDRG00005004867) #27	ENSCDRG00005004858 #28	POLN (ENSCDRG00005004833) #29	HAUS3 (ENSCDRG00005004806) #31	MXD4 (ENSCDRG00005004719) #32	ENSCDRG00005004698 #33	ENSCDRG00005004685 #33	CFAP99 (ENSCDRG00005004620) #35	RNF4 (ENSCDRG00005004592) #36	FAM193A (ENSCDRG00005004529) #37	TNIP2 (ENSCDRG00005004514)
Alpaca	MODERN SPECIES	3439																ENSVPAG00000006833 #22
Suina	ANCESTRAL SPECIES	33	ENSGT00390000015667	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Pig	MODERN SPECIES	16	TMEM175 (ENSSSCG00000038234)	DGKQ (ENSSSCG00000027286)	IDUA (ENSSSCG00000032262) #8	SLC26A1 (ENSSSCG00000035739) #7	FGFRL1 (ENSSSCG00000036512) #9	ENSSSCG00000045703 #11	ENSSSCG00000032808 #12	SPON2 (ENSSSCG00000039488) #13	CTBP1 (ENSSSCG00000031302) #14	MAEA (ENSSSCG00000032304) #15	UVSSA (ENSSSCG00000037035) #16	NKX1-1 (ENSSSCG00000038573) #17	FAM53A (ENSSSCG00000032633)	SLBP (ENSSSCG00000055957) #20	TMEM129 (ENSSSCG00000008678) #21	ENSSSCG00000008677 #22	FGFR3 (ENSSSCG00000030827) #23	LETM1 (ENSSSCG00000008675) #24	NSD2 (ENSSSCG00000008682) #25	NELFA (ENSSSCG00000008681) #26	C4orf48 (ENSSSCG00000063120) #27	NAT8L (ENSSSCG00000033541) #28	POLN (ENSSSCG00000027718) #29	MXD4 (ENSSSCG00000008687) #32	ZFYVE28 (ENSSSCG00000008689) #33	CFAP99 (ENSSSCG00000034633) #35	ENSSSCG00000054601	RNF4 (ENSSSCG00000008690) #36	FAM193A (ENSSSCG00000029745) #37	TNIP2 (ENSSSCG00000008691)	SH3BP2 (ENSSSCG00000022004)
Chacoan peccary	MODERN SPECIES	970														SLBP (ENSCWAG00000021163) #20	TMEM129 (ENSCWAG00000021206) #21	ENSCWAG00000021222 #22
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Carnivora	ANCESTRAL SPECIES	5	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Caniformia	ANCESTRAL SPECIES	7	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Ursidae	ANCESTRAL SPECIES	29	ENSGT00390000015667	ENSGT00940000159492	ENSGT00390000015494.e #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494.f #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Ursus	ANCESTRAL SPECIES	105	ENSGT00950000182938.b.b.b.a	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT00390000015494.f #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00940000164052	ENSGT00390000002216	ENSGT00940000158581
American black bear	MODERN SPECIES	3633													FAM53A (ENSUAMG00000012996)	SLBP (ENSUAMG00000012990) #20	TMEM129 (ENSUAMG00000012988) #21	TACC3 (ENSUAMG00000012984) #22
Polar bear	MODERN SPECIES	111	PCGF3 (ENSUMAG00000005777)	ENSUMAG00000005790	ENSUMAG00000005806	ENSUMAG00000005996	TMEM175 (ENSUMAG00000006032)	DGKQ (ENSUMAG00000006042)	IDUA (ENSUMAG00000006064) #8	SLC26A1 (ENSUMAG00000006068) #7	ENSUMAG00000006071 #12	CTBP1 (ENSUMAG00000006076) #14	ENSUMAG00000006084 #15	UVSSA (ENSUMAG00000006091) #16	ENSUMAG00000006104	SLBP (ENSUMAG00000006119) #20	TMEM129 (ENSUMAG00000006128) #21	TACC3 (ENSUMAG00000006135) #22	LETM1 (ENSUMAG00000006168) #24	ENSUMAG00000006396 #25	ENSUMAG00000006404 #25	NELFA (ENSUMAG00000006418) #26	ENSUMAG00000006510 #28	POLN (ENSUMAG00000006517) #29	HAUS3 (ENSUMAG00000006573) #31	ENSUMAG00000006575 #32	ZFYVE28 (ENSUMAG00000006582) #33	CFAP99 (ENSUMAG00000006604) #35	RNF4 (ENSUMAG00000006614) #36	FAM193A (ENSUMAG00000006616) #37	ENSUMAG00000006620	SH3BP2 (ENSUMAG00000006627)	ENSUMAG00000006661
Giant Panda	MODERN SPECIES	2	PCGF3 (ENSAMEG00000016748)	ENSAMEG00000016756	GAK (ENSAMEG00000016761)	TMEM175 (ENSAMEG00000016795)	DGKQ (ENSAMEG00000016800)	SLC26A1 (ENSAMEG00000026648) #7	IDUA (ENSAMEG00000016812) #8	ENSAMEG00000029356 #11	ENSAMEG00000024953 #12	SPON2 (ENSAMEG00000023804) #13	CTBP1 (ENSAMEG00000016883) #14	ENSAMEG00000016890 #15	UVSSA (ENSAMEG00000016899) #16	ENSAMEG00000016915 #20	TMEM129 (ENSAMEG00000016921) #21	TACC3 (ENSAMEG00000016924) #22	FGFR3 (ENSAMEG00000014119) #23	LETM1 (ENSAMEG00000014210) #24	NSD2 (ENSAMEG00000014221) #25	NELFA (ENSAMEG00000014240) #26	NAT8L (ENSAMEG00000014278) #28	POLN (ENSAMEG00000014290) #29	HAUS3 (ENSAMEG00000014332) #31	MXD4 (ENSAMEG00000014340) #32	ZFYVE28 (ENSAMEG00000014349) #33	CFAP99 (ENSAMEG00000028653) #35	FAM193A (ENSAMEG00000014383) #37	TNIP2 (ENSAMEG00000014405)	SH3BP2 (ENSAMEG00000014415)	ADD1 (ENSAMEG00000014449)	MFSD10 (ENSAMEG00000014523)
Mustelinae	ANCESTRAL SPECIES	69	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Ferret	DUPLICATION
Ferret	MODERN SPECIES	334	TMEM175 (ENSMPUG00000011300)	DGKQ (ENSMPUG00000011237)	SLC26A1 (ENSMPUG00000011230) #7	IDUA (ENSMPUG00000011225) #8	FGFRL1 (ENSMPUG00000011220) #9	RNF212 (ENSMPUG00000011212) #11	ENSMPUG00000011191 #12	SPON2 (ENSMPUG00000011185) #13	CTBP1 (ENSMPUG00000011182) #14	MAEA (ENSMPUG00000011174) #15	UVSSA (ENSMPUG00000011171) #16	ENSMPUG00000011168	FAM53A (ENSMPUG00000011145)	SLBP (ENSMPUG00000011139) #20	TMEM129 (ENSMPUG00000011130) #21	ENSMPUG00000011062 #22	FGFR3 (ENSMPUG00000011055) #23	LETM1 (ENSMPUG00000011045) #24	NSD2 (ENSMPUG00000011036) #25	NELFA (ENSMPUG00000011031) #26	ENSMPUG00000011023	NAT8L (ENSMPUG00000011019) #28	HAUS3 (ENSMPUG00000011011) #31	MXD4 (ENSMPUG00000010989) #32	ZFYVE28 (ENSMPUG00000010981) #33	CFAP99 (ENSMPUG00000010977) #35	RNF4 (ENSMPUG00000010957) #36	FAM193A (ENSMPUG00000010949) #37	TNIP2 (ENSMPUG00000010947)	SH3BP2 (ENSMPUG00000010942)	ADD1 (ENSMPUG00000010933)
Ferret	MODERN SPECIES	233	ENSMPUG00000002858	ENSMPUG00000002853	ACAA1 (ENSMPUG00000002761)	MYD88 (ENSMPUG00000002755)	OXSR1 (ENSMPUG00000002669)	SLC22A13 (ENSMPUG00000002651)	SLC22A14 (ENSMPUG00000002632)	XYLB (ENSMPUG00000002626)	ACVR2B (ENSMPUG00000002620)	EXOG (ENSMPUG00000002594)	SCN5A (ENSMPUG00000002582)	SCN10A (ENSMPUG00000002519)	ENSMPUG00000002516	ENSMPUG00000002510	ENSMPUG00000002507	ENSMPUG00000019021 #22	WDR48 (ENSMPUG00000002501)	GORASP1 (ENSMPUG00000002496)	TTC21A (ENSMPUG00000002487)	CSRNP1 (ENSMPUG00000002480)	ENSMPUG00000002476	CX3CR1 (ENSMPUG00000019020)	CCR8 (ENSMPUG00000019018)	SLC25A38 (ENSMPUG00000002474)	ENSMPUG00000002467	ENSMPUG00000002463
American mink	MODERN SPECIES	27	DNAH17 (ENSNVIG00000013924)	PGS1 (ENSNVIG00000013912)	SOCS3 (ENSNVIG00000013909)	ENSNVIG00000013890	TMEM235 (ENSNVIG00000013876)	BIRC5 (ENSNVIG00000013860)	ENSNVIG00000013845	ENSNVIG00000013839	SYNGR2 (ENSNVIG00000013828)	ENSNVIG00000013823	TMC8 (ENSNVIG00000013797)	ENSNVIG00000013760	TNRC6C (ENSNVIG00000013618)	SEPTIN9 (ENSNVIG00000013569)	SEC14L1 (ENSNVIG00000013472)	ENSNVIG00000013464 #22	MGAT5B (ENSNVIG00000013257)	MFS11 (ENSNVIG00000013122)	ENSNVIG00000013109	METTL23 (ENSNVIG00000013092)	JMJD6 (ENSNVIG00000013060)	ENSNVIG00000013049	ST6GALNAC1 (ENSNVIG00000013010)	ST6GALNAC2 (ENSNVIG00000012979)	PRCD (ENSNVIG00000012941)	CYGB (ENSNVIG00000012915)	RHBDF2 (ENSNVIG00000012733)	AANAT (ENSNVIG00000012715)	UBE2O (ENSNVIG00000012693)	SPHK1 (ENSNVIG00000012665)	PRPSAP1 (ENSNVIG00000012655)
Canidae	ANCESTRAL SPECIES	21	ENSGT00530000063586.b	ENSGT00390000010628	ENSGT00390000005639.a.a	ENSGT00390000000470	ENSGT00850000132319.a.a.b	ENSGT00530000063255.B	ENSGT00390000006192	ENSGT00530000063669.a	ENSGT00950000186028	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Red fox	MODERN SPECIES	1	ENSVVUG00000015374	PROM1 (ENSVVUG00000015384)	TAPT1 (ENSVVUG00000015407)	LDB2 (ENSVVUG00000015458)	QDPR (ENSVVUG00000015478)	CLRN2 (ENSVVUG00000015482)	LAP3 (ENSVVUG00000015485)	MED28 (ENSVVUG00000015489)	FAM184B (ENSVVUG00000015510)	ENSVVUG00000015521	MAEA (ENSVVUG00000015526) #15	UVSSA (ENSVVUG00000015547) #16	FAM53A (ENSVVUG00000015571)	SLBP (ENSVVUG00000015578) #20	TMEM129 (ENSVVUG00000015588) #21	TACC3 (ENSVVUG00000015594) #22	FGFR3 (ENSVVUG00000015935) #23	LETM1 (ENSVVUG00000023797) #24	NSD2 (ENSVVUG00000023814) #25	NELFA (ENSVVUG00000023825) #26	ENSVVUG00000023827 #27	NAT8L (ENSVVUG00000023829) #28	POLN (ENSVVUG00000023835) #29	HAUS3 (ENSVVUG00000023845) #31	MXD4 (ENSVVUG00000023848) #32	ZFYVE28 (ENSVVUG00000023859) #33	CFAP99 (ENSVVUG00000023861) #35	RNF4 (ENSVVUG00000023864) #36	ENSVVUG00000023867	FAM193A (ENSVVUG00000023873) #37	TNIP2 (ENSVVUG00000023886)
Canis_lupus	ANCESTRAL SPECIES	23	ENSGT00390000010628	ENSGT00390000005639.a.a	ENSGT00940000155341.h.n	ENSGT00390000000470	ENSGT00850000132319.a.a.b	ENSGT00530000063255.B	ENSGT00390000006192	ENSGT00530000063669.a	ENSGT00950000186028	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Dog	MODERN SPECIES	22	LDB2 (ENSCAFG00845000708)	ENSCAFG00845000676	ENSCAFG00845000652	QDPR (ENSCAFG00845000600)	CLRN2 (ENSCAFG00845000538)	LAP3 (ENSCAFG00845000510)	MED28 (ENSCAFG00845000492)	ENSCAFG00845000449	ENSCAFG00845000433	ENSCAFG00845000407 #15	UVSSA (ENSCAFG00845000348) #16	NKX1-1 (ENSCAFG00845000317) #17	FAM53A (ENSCAFG00845000302)	SLBP (ENSCAFG00845000261) #20	TMEM129 (ENSCAFG00845000213) #21	TACC3 (ENSCAFG00845013476) #22	FGFR3 (ENSCAFG00845013339) #23	LETM1 (ENSCAFG00845013211) #24	ENSCAFG00845013175	ENSCAFG00845013159	NSD2 (ENSCAFG00845013019) #25	NELFA (ENSCAFG00845012841) #26	C3H4orf48 (ENSCAFG00845012789) #27	NAT8L (ENSCAFG00845012758) #28	POLN (ENSCAFG00845012682) #29	MXD4 (ENSCAFG00845012610) #32	ZFYVE28 (ENSCAFG00845012527) #33	CFAP99 (ENSCAFG00845012463) #35	RNF4 (ENSCAFG00845012388) #36	FAM193A (ENSCAFG00845012303) #37	TNIP2 (ENSCAFG00845012210)
Dingo	MODERN SPECIES	138	LDB2 (ENSCAFG00020012223)	ENSCAFG00020012229	ENSCAFG00020012245	QDPR (ENSCAFG00020012248)	CLRN2 (ENSCAFG00020012251)	LAP3 (ENSCAFG00020012262)	MED28 (ENSCAFG00020012266)	FAM184B (ENSCAFG00020012270)	ENSCAFG00020012281	MAEA (ENSCAFG00020012285) #15	UVSSA (ENSCAFG00020012302) #16	NKX1-1 (ENSCAFG00020012312) #17	FAM53A (ENSCAFG00020012319)	SLBP (ENSCAFG00020012334) #20	TMEM129 (ENSCAFG00020012337) #21	TACC3 (ENSCAFG00020012340) #22	FGFR3 (ENSCAFG00020012349) #23	LETM1 (ENSCAFG00020012352) #24	ENSCAFG00020012359	NSD2 (ENSCAFG00020012364) #25	NELFA (ENSCAFG00020012377) #26	C4orf48 (ENSCAFG00020012395) #27	NAT8L (ENSCAFG00020012398) #28	POLN (ENSCAFG00020012402) #29	HAUS3 (ENSCAFG00020012427) #31	MXD4 (ENSCAFG00020012430) #32	ZFYVE28 (ENSCAFG00020012447) #33	CFAP99 (ENSCAFG00020012449) #35	RNF4 (ENSCAFG00020012490) #36	FAM193A (ENSCAFG00020012546) #37	TNIP2 (ENSCAFG00020012703)
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429.x #25	ENSGT00940000157429.w.a #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37
Tiger	MODERN SPECIES	303													MAEA (ENSPTIG00000018894) #15	SLBP (ENSPTIG00000015057) #20	TMEM129 (ENSPTIG00000014840) #21	ENSPTIG00000013247 #22	LETM1 (ENSPTIG00000011956) #24	ENSPTIG00000020162 #25	ENSPTIG00000018949 #25	NELFA (ENSPTIG00000017223) #26	C4orf48 (ENSPTIG00000016138) #27	POLN (ENSPTIG00000011746) #29	HAUS3 (ENSPTIG00000011163) #31	ENSPTIG00000010627 #33	ENSPTIG00000009881 #33	CFAP99 (ENSPTIG00000008222) #35	RNF4 (ENSPTIG00000019861) #36	FAM193A (ENSPTIG00000015747) #37	TNIP2 (ENSPTIG00000015248)	SH3BP2 (ENSPTIG00000011454)	ENSPTIG00000011214
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429.x #25	ENSGT00940000157429.w.a #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
leopard	MODERN SPECIES	200	CPLX1 (ENSPPRG00000013763)	GAK (ENSPPRG00000014064)	TMEM175 (ENSPPRG00000014184)	DGKQ (ENSPPRG00000014376)	SLC26A1 (ENSPPRG00000014458) #7	IDUA (ENSPPRG00000014575) #8	FGFRL1 (ENSPPRG00000014614) #9	RNF212 (ENSPPRG00000014687) #11	ENSPPRG00000014721 #12	SPON2 (ENSPPRG00000014785) #13	CTBP1 (ENSPPRG00000014866) #14	MAEA (ENSPPRG00000015029) #15	UVSSA (ENSPPRG00000016323) #16	SLBP (ENSPPRG00000016897) #20	TMEM129 (ENSPPRG00000017152) #21	TACC3 (ENSPPRG00000017349) #22
lion	MODERN SPECIES	4	CPLX1 (ENSPLOG00000005834)	GAK (ENSPLOG00000005676)	TMEM175 (ENSPLOG00000005620)	DGKQ (ENSPLOG00000005591)	SLC26A1 (ENSPLOG00000005194) #7	IDUA (ENSPLOG00000005177) #8	FGFRL1 (ENSPLOG00000005150) #9	ENSPLOG00000005044 #12	SPON2 (ENSPLOG00000005028) #13	CTBP1 (ENSPLOG00000004983) #14	MAEA (ENSPLOG00000004894) #15	UVSSA (ENSPLOG00000004830) #16	NKX1-1 (ENSPLOG00000004811) #17	SLBP (ENSPLOG00000004771) #20	TMEM129 (ENSPLOG00000004687) #21	TACC3 (ENSPLOG00000004666) #22	FGFR3 (ENSPLOG00000004622) #23	LETM1 (ENSPLOG00000004551) #24	NSD2 (ENSPLOG00000004484) #25	NELFA (ENSPLOG00000004443) #26	C4orf48 (ENSPLOG00000004418) #27	ENSPLOG00000004406 #28	HAUS3 (ENSPLOG00000004393) #31	ENSPLOG00000004384	MXD4 (ENSPLOG00000004376) #32	ENSPLOG00000004365 #33	ENSPLOG00000004349 #33	CFAP99 (ENSPLOG00000004314) #35	RNF4 (ENSPLOG00000004275) #36	ENSPLOG00000004250	FAM193A (ENSPLOG00000004221) #37
Cat	MODERN SPECIES	235	GAK (ENSFCAG00000008230)	TMEM175 (ENSFCAG00000012656)	DGKQ (ENSFCAG00000012659)	ENSFCAG00000026340 #7	IDUA (ENSFCAG00000004723) #8	FGFRL1 (ENSFCAG00000043643) #9	RNF212 (ENSFCAG00000046779) #11	ENSFCAG00000018929 #12	SPON2 (ENSFCAG00000036077) #13	CTBP1 (ENSFCAG00000002265) #14	MAEA (ENSFCAG00000002950) #15	UVSSA (ENSFCAG00000002951) #16	NKX1-1 (ENSFCAG00000043543) #17	SLBP (ENSFCAG00000000169) #20	TMEM129 (ENSFCAG00000025439) #21	TACC3 (ENSFCAG00000000171) #22	FGFR3 (ENSFCAG00000018385) #23	LETM1 (ENSFCAG00000010616) #24	NSD2 (ENSFCAG00000037938) #25	NELFA (ENSFCAG00000010623) #26	CB1H4orf48 (ENSFCAG00000033658) #27	NAT8L (ENSFCAG00000044588) #28	HAUS3 (ENSFCAG00000027704) #31	MXD4 (ENSFCAG00000042853) #32	ZFYVE28 (ENSFCAG00000052700) #33	CFAP99 (ENSFCAG00000037967) #35	RNF4 (ENSFCAG00000004051) #36	FAM193A (ENSFCAG00000004056) #37	TNIP2 (ENSFCAG00000004062)	ENSFCAG00000047433	SH3BP2 (ENSFCAG00000025020)
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217.ac #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Equus	ANCESTRAL SPECIES	12	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217.ac #33	ENSGT00500000045231 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Horse	MODERN SPECIES	22	TMEM175 (ENSECAG00000023326)	DGKQ (ENSECAG00000022309)	IDUA (ENSECAG00000019632) #8	SLC26A1 (ENSECAG00000022104) #7	FGFRL1 (ENSECAG00000018253) #9	ENSECAG00000052273	RNF212 (ENSECAG00000038589) #11	ENSECAG00000018022 #12	SPON2 (ENSECAG00000016940) #13	CTBP1 (ENSECAG00000015999) #14	MAEA (ENSECAG00000013742) #15	UVSSA (ENSECAG00000012127) #16	NKX1-1 (ENSECAG00000031807) #17	SLBP (ENSECAG00000011689) #20	TMEM129 (ENSECAG00000011634) #21	TACC3 (ENSECAG00000011380) #22	FGFR3 (ENSECAG00000019533) #23	LETM1 (ENSECAG00000018569) #24	NSD2 (ENSECAG00000011661) #25	NELFA (ENSECAG00000010240) #26	NAT8L (ENSECAG00000009867) #28	HAUS3 (ENSECAG00000004593) #31	POLN (ENSECAG00000007802) #29	MXD4 (ENSECAG00000029077) #32	ENSECAG00000058211 #33	ZFYVE28 (ENSECAG00000024955) #33	CFAP99 (ENSECAG00000029686) #35	ENSECAG00000060379	FAM193A (ENSECAG00000024501) #37	TNIP2 (ENSECAG00000024134)	SH3BP2 (ENSECAG00000021841)
Donkey	MODERN SPECIES	22	GAK (ENSEASG00005022610)	TMEM175 (ENSEASG00005022646)	DGKQ (ENSEASG00005022651)	SLC26A1 (ENSEASG00005022673) #7	IDUA (ENSEASG00005022661) #8	FGFRL1 (ENSEASG00005022675) #9	RNF212 (ENSEASG00005036465) #11	ENSEASG00005022677 #12	SPON2 (ENSEASG00005022679) #13	CTBP1 (ENSEASG00005022682) #14	MAEA (ENSEASG00005022693) #15	UVSSA (ENSEASG00005022702) #16	ENSEASG00005031810	SLBP (ENSEASG00005024705) #20	TMEM129 (ENSEASG00005022718) #21	TACC3 (ENSEASG00005022722) #22	FGFR3 (ENSEASG00005022725) #23	LETM1 (ENSEASG00005022727) #24	NSD2 (ENSEASG00005022729) #25	NELFA (ENSEASG00005022732) #26	C4orf48 (ENSEASG00005022733) #27	NAT8L (ENSEASG00005022734) #28	HAUS3 (ENSEASG00005022762) #31	POLN (ENSEASG00005022744) #29	MXD4 (ENSEASG00005034001) #32	ENSEASG00005028915 #33	ENSEASG00005022764 #33	CFAP99 (ENSEASG00005022766) #35	ENSEASG00005036723	RNF4 (ENSEASG00005031929) #36	ENSEASG00005035809
Chiroptera	DUPLICATION
Chiroptera	ANCESTRAL SPECIES																	ENSGT00940000158858.e #22
Microchiroptera	ANCESTRAL SPECIES																	ENSGT00940000158858.e #22
Microbat	MODERN SPECIES	995	RALBP1 (ENSMLUG00000013853)	TWSG1 (ENSMLUG00000013848)	ANKRD12 (ENSMLUG00000008632)	NDUFV2 (ENSMLUG00000013503)	ENSMLUG00000013891	MTCL1 (ENSMLUG00000002889)	RAB12 (ENSMLUG00000002883)	PTPRM (ENSMLUG00000016507)	LRRC30 (ENSMLUG00000004630)	LAMA1 (ENSMLUG00000004002)	ARHGAP28 (ENSMLUG00000005314)	ENSMLUG00000023508	L3MBTL4 (ENSMLUG00000002011)	EPB41L3 (ENSMLUG00000016125)	ZBTB14 (ENSMLUG00000016123)	ENSMLUG00000030528 #22	DLGAP1 (ENSMLUG00000012142)	TGIF1 (ENSMLUG00000025199)	MYL12B (ENSMLUG00000005189)	MYOM1 (ENSMLUG00000003417)	ENSMLUG00000029548	LPIN2 (ENSMLUG00000003403)	EMILIN2 (ENSMLUG00000003397)	SMCHD1 (ENSMLUG00000003378)	NDC80 (ENSMLUG00000003354)	METTL4 (ENSMLUG00000003351)
Chiroptera	ANCESTRAL SPECIES	9	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858.f #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217.ac #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858.f #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217.ac #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Greater horseshoe bat	MODERN SPECIES	23	GAK (ENSRFEG00010012592)	TMEM175 (ENSRFEG00010012470)	DGKQ (ENSRFEG00010012388)	SLC26A1 (ENSRFEG00010012284) #7	IDUA (ENSRFEG00010012246) #8	FGFRL1 (ENSRFEG00010012188) #9	ENSRFEG00010012091 #12	SPON2 (ENSRFEG00010012048) #13	CTBP1 (ENSRFEG00010011872) #14	MAEA (ENSRFEG00010011546) #15	UVSSA (ENSRFEG00010011482) #16	NKX1-1 (ENSRFEG00010011426) #17	FAM53A (ENSRFEG00010011394)	SLBP (ENSRFEG00010011166) #20	TMEM129 (ENSRFEG00010011065) #21	TACC3 (ENSRFEG00010010981) #22	FGFR3 (ENSRFEG00010010819) #23	LETM1 (ENSRFEG00010010660) #24	NSD2 (ENSRFEG00010010545) #25	NELFA (ENSRFEG00010010351) #26	C4orf48 (ENSRFEG00010010259) #27	NAT8L (ENSRFEG00010010189) #28	POLN (ENSRFEG00010009949) #29	HAUS3 (ENSRFEG00010009879) #31	MXD4 (ENSRFEG00010009834) #32	ZFYVE28 (ENSRFEG00010009726) #33	CFAP99 (ENSRFEG00010009563) #35	RNF4 (ENSRFEG00010009477) #36	FAM193A (ENSRFEG00010009206) #37	TNIP2 (ENSRFEG00010009107)	SH3BP2 (ENSRFEG00010008972)
Microbat	MODERN SPECIES	2389														SLBP (ENSMLUG00000004425) #20	TMEM129 (ENSMLUG00000002379) #21	TACC3 (ENSMLUG00000003406) #22
Megabat	MODERN SPECIES	1864														SLBP (ENSPVAG00000002807) #20	ENSPVAG00000002810 #21	ENSPVAG00000002812 #22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000158858 #22
Common shrew	MODERN SPECIES	634																ENSSARG00000002400 #22
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Primates	ANCESTRAL SPECIES	10	ENSGT00390000015667	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Strepsirrhini	ANCESTRAL SPECIES	40	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Lemuriformes	ANCESTRAL SPECIES	44	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Mouse lemur	MODERN SPECIES	9	SPATA25 (ENSMICG00000043062)	ZSWIM3 (ENSMICG00000045627)	ACOT8 (ENSMICG00000044014)	SNX21 (ENSMICG00000011233)	TNNC2 (ENSMICG00000011227)	ENSMICG00000011218	DNTTIP1 (ENSMICG00000011212)	WFDC3 (ENSMICG00000011205)	SPINT4 (ENSMICG00000004503)	WFDC13 (ENSMICG00000011200)	ENSMICG00000011195	WFDC11 (ENSMICG00000011178)	WFDC10A (ENSMICG00000013933)	WFDC8 (ENSMICG00000011960)	ENSMICG00000007821	TACC3 (ENSMICG00000038424) #22	LRPAP1 (ENSMICG00000013565)	DOK7 (ENSMICG00000006754)	HGFAC (ENSMICG00000007634)	RGS12 (ENSMICG00000007623)	ENSMICG00000030945	MSANTD1 (ENSMICG00000031701)	HTT (ENSMICG00000006879)	GRK4 (ENSMICG00000006863)	NOP14 (ENSMICG00000007804)	MFSD10 (ENSMICG00000007796)	ADD1 (ENSMICG00000007785)	ENSMICG00000030984	SH3BP2 (ENSMICG00000002298)	TNIP2 (ENSMICG00000008835)	FAM193A (ENSMICG00000008863) #37
Lemuriformes_a	ANCESTRAL SPECIES	93	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22
Coquerels sifaka	MODERN SPECIES	944	IDUA (ENSPCOG00000016615) #8	SLC26A1 (ENSPCOG00000027903) #7	FGFRL1 (ENSPCOG00000015256) #9	ENSPCOG00000022474 #11	ENSPCOG00000016231 #12	SPON2 (ENSPCOG00000022718) #13	CTBP1 (ENSPCOG00000012972) #14	MAEA (ENSPCOG00000015460) #15	UVSSA (ENSPCOG00000026955) #16	ENSPCOG00000010656	ENSPCOG00000017605	NKX1-1 (ENSPCOG00000012600) #17	FAM53A (ENSPCOG00000016812)	SLBP (ENSPCOG00000017399) #20	TMEM129 (ENSPCOG00000026738) #21	TACC3 (ENSPCOG00000024203) #22
Greater bamboo lemur	MODERN SPECIES	2177																ENSPSMG00000002860 #22
Bushbaby	MODERN SPECIES	313	GAK (ENSOGAG00000015576)	TMEM175 (ENSOGAG00000015589)	DGKQ (ENSOGAG00000015595)	IDUA (ENSOGAG00000015603) #8	SLC26A1 (ENSOGAG00000015601) #7	FGFRL1 (ENSOGAG00000015610) #9	ENSOGAG00000030464 #12	SPON2 (ENSOGAG00000006366) #13	CTBP1 (ENSOGAG00000006367) #14	MAEA (ENSOGAG00000006370) #15	UVSSA (ENSOGAG00000006373) #16	NKX1-1 (ENSOGAG00000034822) #17	ENSOGAG00000014882	SLBP (ENSOGAG00000009750) #20	TMEM129 (ENSOGAG00000014873) #21	TACC3 (ENSOGAG00000014875) #22	FGFR3 (ENSOGAG00000025157) #23	ENSOGAG00000014883 #24	NSD2 (ENSOGAG00000014890) #25	NELFA (ENSOGAG00000029627) #26	C4orf48 (ENSOGAG00000031277) #27	NAT8L (ENSOGAG00000026595) #28	POLN (ENSOGAG00000011299) #29	HAUS3 (ENSOGAG00000032569) #31	MXD4 (ENSOGAG00000011305) #32	ZFYVE28 (ENSOGAG00000011309) #33	RNF4 (ENSOGAG00000010776) #36	FAM193A (ENSOGAG00000012386) #37	TNIP2 (ENSOGAG00000012391)	SH3BP2 (ENSOGAG00000008463)	ADD1 (ENSOGAG00000011061)
Haplorrhini	ANCESTRAL SPECIES	23	ENSGT00390000015667	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00390000015667	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00910000147922	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00650000094590	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00910000147922	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00910000148485	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a.i #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00650000094590	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318.u #36
Hominidae	ANCESTRAL SPECIES	12	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00910000147922	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00910000148485	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a.i #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00650000094590	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318.u #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00910000147922	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00910000148485	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a.i #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00650000094590	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318.u #36	ENSGT00390000000973.a.b #37
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00910000147922	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00910000148485	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a.i #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00650000094590	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318.u #36	ENSGT00390000000973.a.b #37
Pan	ANCESTRAL SPECIES	7	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00910000147922	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00910000148485	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a.i #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00650000094590	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318.u #36	ENSGT00390000000973.a.b #37
Chimpanzee	MODERN SPECIES	17	DGKQ (ENSPTRG00000047042)	SLC26A1 (ENSPTRG00000015818) #7	IDUA (ENSPTRG00000015819) #8	FGFRL1 (ENSPTRG00000049998) #9	RNF212 (ENSPTRG00000015822) #11	ENSPTRG00000045674 #12	SPON2 (ENSPTRG00000015825) #13	CTBP1 (ENSPTRG00000015827) #14	ENSPTRG00000049092	MAEA (ENSPTRG00000015829) #15	UVSSA (ENSPTRG00000015830) #16	NKX1-1 (ENSPTRG00000041220) #17	FAM53A (ENSPTRG00000015831)	SLBP (ENSPTRG00000015832) #20	TMEM129 (ENSPTRG00000015833) #21	TACC3 (ENSPTRG00000015834) #22	FGFR3 (ENSPTRG00000015836) #23	LETM1 (ENSPTRG00000015837) #24	NSD2 (ENSPTRG00000015838) #25	NELFA (ENSPTRG00000015840) #26	C4H4orf48 (ENSPTRG00000031284) #27	NAT8L (ENSPTRG00000047587) #28	POLN (ENSPTRG00000034296) #29	ENSPTRG00000052565	HAUS3 (ENSPTRG00000015843) #31	MXD4 (ENSPTRG00000015844) #32	ZFYVE28 (ENSPTRG00000015845) #33	CFAP99 (ENSPTRG00000039939) #35	RNF4 (ENSPTRG00000046370) #36	FAM193A (ENSPTRG00000015847) #37	TNIP2 (ENSPTRG00000015848)
Bonobo	MODERN SPECIES	17	TMEM175 (ENSPPAG00000001209)	DGKQ (ENSPPAG00000037911)	SLC26A1 (ENSPPAG00000034145) #7	IDUA (ENSPPAG00000032304) #8	FGFRL1 (ENSPPAG00000033720) #9	RNF212 (ENSPPAG00000043537) #11	ENSPPAG00000033770 #12	SPON2 (ENSPPAG00000038791) #13	CTBP1 (ENSPPAG00000032870) #14	ENSPPAG00000016070	ENSPPAG00000017524 #15	UVSSA (ENSPPAG00000039158) #16	FAM53A (ENSPPAG00000001687)	SLBP (ENSPPAG00000033300) #20	TMEM129 (ENSPPAG00000032640) #21	TACC3 (ENSPPAG00000041213) #22	ENSPPAG00000039682	FGFR3 (ENSPPAG00000034154) #23	LETM1 (ENSPPAG00000022259) #24	NSD2 (ENSPPAG00000028888) #25	NELFA (ENSPPAG00000039571) #26	ENSPPAG00000040365 #27	ENSPPAG00000033617 #28	POLN (ENSPPAG00000042877) #29	ENSPPAG00000026673	HAUS3 (ENSPPAG00000032988) #31	ENSPPAG00000042591 #32	ZFYVE28 (ENSPPAG00000013584) #33	CFAP99 (ENSPPAG00000035753) #35	RNF4 (ENSPPAG00000035112) #36	FAM193A (ENSPPAG00000039176) #37
Human	MODERN SPECIES	16	CPLX1 (ENSG00000168993)	GAK (ENSG00000178950)	TMEM175 (ENSG00000127419)	DGKQ (ENSG00000145214)	SLC26A1 (ENSG00000145217) #7	IDUA (ENSG00000127415) #8	FGFRL1 (ENSG00000127418) #9	RNF212 (ENSG00000178222) #11	SPON2 (ENSG00000159674) #13	CTBP1 (ENSG00000159692) #14	MAEA (ENSG00000090316) #15	UVSSA (ENSG00000163945) #16	NKX1-1 (ENSG00000235608) #17	FAM53A (ENSG00000174137)	SLBP (ENSG00000163950) #20	TACC3 (ENSG00000013810) #22	TMEM129 (ENSG00000168936) #21	FGFR3 (ENSG00000068078) #23	LETM1 (ENSG00000168924) #24	NSD2 (ENSG00000109685) #25	NELFA (ENSG00000185049) #26	C4orf48 (ENSG00000243449) #27	NAT8L (ENSG00000185818) #28	POLN (ENSG00000130997) #29	HAUS3 (ENSG00000214367) #31	MXD4 (ENSG00000123933) #32	ZFYVE28 (ENSG00000159733) #33	CFAP99 (ENSG00000206113) #35	RNF4 (ENSG00000063978) #36	FAM193A (ENSG00000125386) #37	TNIP2 (ENSG00000168884)
Gorilla	MODERN SPECIES	17	TMEM175 (ENSGGOG00000010287)	DGKQ (ENSGGOG00000010295)	SLC26A1 (ENSGGOG00000010333) #7	IDUA (ENSGGOG00000010322) #8	FGFRL1 (ENSGGOG00000010340) #9	RNF212 (ENSGGOG00000023243) #11	ENSGGOG00000007686 #12	SPON2 (ENSGGOG00000002707) #13	CTBP1 (ENSGGOG00000010541) #14	ENSGGOG00000036321	MAEA (ENSGGOG00000004866) #15	UVSSA (ENSGGOG00000004872) #16	FAM53A (ENSGGOG00000003163)	SLBP (ENSGGOG00000003167) #20	TMEM129 (ENSGGOG00000039598) #21	TACC3 (ENSGGOG00000041158) #22	FGFR3 (ENSGGOG00000015081) #23	LETM1 (ENSGGOG00000002923) #24	NSD2 (ENSGGOG00000014144) #25	NELFA (ENSGGOG00000014161) #26	ENSGGOG00000041239 #27	ENSGGOG00000037682 #28	POLN (ENSGGOG00000006832) #29	ENSGGOG00000015700	HAUS3 (ENSGGOG00000000744) #31	MXD4 (ENSGGOG00000000747) #32	ZFYVE28 (ENSGGOG00000000748) #33	CFAP99 (ENSGGOG00000041964) #35	RNF4 (ENSGGOG00000036446) #36	ENSGGOG00000025865	SH3BP2 (ENSGGOG00000014162)
Orangutan	MODERN SPECIES	17	DGKQ (ENSPPYG00000014513)	IDUA (ENSPPYG00000014514) #8	SLC26A1 (ENSPPYG00000014515) #7	FGFRL1 (ENSPPYG00000040964) #9	ENSPPYG00000014517 #11	ENSPPYG00000014518 #12	SPON2 (ENSPPYG00000014522) #13	CTBP1 (ENSPPYG00000014524) #14	ENSPPYG00000038782	MAEA (ENSPPYG00000014525) #15	UVSSA (ENSPPYG00000014526) #16	NKX1-1 (ENSPPYG00000041138) #17	FAM53A (ENSPPYG00000014528)	ENSPPYG00000014529 #20	TMEM129 (ENSPPYG00000014530) #21	TACC3 (ENSPPYG00000014531) #22	FGFR3 (ENSPPYG00000014532) #23	LETM1 (ENSPPYG00000014533) #24	NSD2 (ENSPPYG00000014534) #25	NELFA (ENSPPYG00000014535) #26	ENSPPYG00000014536 #27	NAT8L (ENSPPYG00000014537) #28	POLN (ENSPPYG00000014538) #29	ENSPPYG00000040447	ENSPPYG00000014539 #31	ENSPPYG00000036280	ENSPPYG00000037498 #32	ZFYVE28 (ENSPPYG00000014542) #33	CFAP99 (ENSPPYG00000040137) #35	RNF4 (ENSPPYG00000025865) #36	FAM193A (ENSPPYG00000014544) #37
Gibbon	MODERN SPECIES	12	ENSNLEG00000000967	SLC26A1 (ENSNLEG00000000982) #7	IDUA (ENSNLEG00000000973) #8	ENSNLEG00000000991 #9	ENSNLEG00000000998	ENSNLEG00000035394 #12	SPON2 (ENSNLEG00000001006) #13	CTBP1 (ENSNLEG00000001055) #14	MAEA (ENSNLEG00000001060) #15	UVSSA (ENSNLEG00000001082) #16	ENSNLEG00000001097	FAM53A (ENSNLEG00000000044)	SLBP (ENSNLEG00000000048) #20	ENSNLEG00000034209 #21	ENSNLEG00000035802	TACC3 (ENSNLEG00000000057) #22	ENSNLEG00000000063 #23	LETM1 (ENSNLEG00000000067) #24	NSD2 (ENSNLEG00000000081) #25	ENSNLEG00000000120 #26	ENSNLEG00000030858 #27	ENSNLEG00000035664 #28	ENSNLEG00000000145 #31	POLN (ENSNLEG00000000132) #29	ENSNLEG00000036277	ENSNLEG00000000149 #32	ZFYVE28 (ENSNLEG00000000151) #33	ENSNLEG00000000154 #35	ENSNLEG00000034085	ENSNLEG00000031900 #36	FAM193A (ENSNLEG00000000167) #37
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00910000147922	ENSGT00940000153203.B #15	ENSGT00910000146990	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a.g #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000000703.g.a.c.b	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00650000094590	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00910000146990	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a.g #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000000703.g.a.c.b	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00650000094590	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00910000146990	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a.g #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000000703.h.h.a	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00650000094590	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36
Macaca	ANCESTRAL SPECIES	25	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00910000146990	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a.g #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000000703.h.h.a	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00650000094590	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00390000015667	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00910000146990	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a.g #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000000703.h.h.a	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Rhesus	MODERN SPECIES	15	GAK (ENSMMUG00000016919)	TMEM175 (ENSMMUG00000017221)	DGKQ (ENSMMUG00000017222)	IDUA (ENSMMUG00000057764) #8	SLC26A1 (ENSMMUG00000017223) #7	FGFRL1 (ENSMMUG00000032300) #9	RNF212 (ENSMMUG00000015507) #11	SPON2 (ENSMMUG00000020856) #13	CTBP1 (ENSMMUG00000008323) #14	MAEA (ENSMMUG00000008357) #15	UVSSA (ENSMMUG00000038497) #16	NKX1-1 (ENSMMUG00000051731) #17	FAM53A (ENSMMUG00000008363)	SLBP (ENSMMUG00000032303) #20	TMEM129 (ENSMMUG00000064450) #21	TACC3 (ENSMMUG00000011191) #22	FGFR3 (ENSMMUG00000019945) #23	LETM1 (ENSMMUG00000019948) #24	NSD2 (ENSMMUG00000046942) #25	NELFA (ENSMMUG00000009944) #26	ENSMMUG00000003234	CKQ732225.1H4orf48 (ENSMMUG00000032304) #27	POLN (ENSMMUG00000001156) #29	ENSMMUG00000055448	MXD4 (ENSMMUG00000048558) #32	ZFYVE28 (ENSMMUG00000032306) #33	CFAP99 (ENSMMUG00000040759) #35	RNF4 (ENSMMUG00000007948) #36	FAM193A (ENSMMUG00000013158) #37	TNIP2 (ENSMMUG00000007966)	SH3BP2 (ENSMMUG00000014335)
Crab-eating macaque	MODERN SPECIES	15	TMEM175 (ENSMFAG00000041960)	DGKQ (ENSMFAG00000001042)	IDUA (ENSMFAG00000032030) #8	ENSMFAG00000039496	ENSMFAG00000002925 #9	RNF212 (ENSMFAG00000002719) #11	SPON2 (ENSMFAG00000050124) #13	CTBP1 (ENSMFAG00000000176) #14	MAEA (ENSMFAG00000001193) #15	UVSSA (ENSMFAG00000045124) #16	ENSMFAG00000030632	NKX1-1 (ENSMFAG00000002277) #17	FAM53A (ENSMFAG00000052796)	SLBP (ENSMFAG00000030130) #20	TMEM129 (ENSMFAG00000000493) #21	TACC3 (ENSMFAG00000043154) #22	FGFR3 (ENSMFAG00000032292) #23	LETM1 (ENSMFAG00000039886) #24	NSD2 (ENSMFAG00000031384) #25	NELFA (ENSMFAG00000035742) #26	ENSMFAG00000038719	C4orf48 (ENSMFAG00000001046) #27	ENSMFAG00000059887 #28	POLN (ENSMFAG00000032512) #29	ENSMFAG00000062209	HAUS3 (ENSMFAG00000034116) #31	ENSMFAG00000053887 #32	ZFYVE28 (ENSMFAG00000062429) #33	CFAP99 (ENSMFAG00000034253) #35	RNF4 (ENSMFAG00000050616) #36	FAM193A (ENSMFAG00000045259) #37
Pig-tailed macaque	MODERN SPECIES	590	DGKQ (ENSMNEG00000033238)	SLC26A1 (ENSMNEG00000037199) #7	IDUA (ENSMNEG00000036273) #8	FGFRL1 (ENSMNEG00000028620) #9	ENSMNEG00000036883 #11	ENSMNEG00000042968 #12	SPON2 (ENSMNEG00000034158) #13	CTBP1 (ENSMNEG00000037787) #14	MAEA (ENSMNEG00000028551) #15	UVSSA (ENSMNEG00000034877) #16	ENSMNEG00000027696	NKX1-1 (ENSMNEG00000036214) #17	FAM53A (ENSMNEG00000036030)	SLBP (ENSMNEG00000008082) #20	TMEM129 (ENSMNEG00000038437) #21	TACC3 (ENSMNEG00000041051) #22	FGFR3 (ENSMNEG00000043249) #23	ENSMNEG00000038507 #24	NSD2 (ENSMNEG00000030530) #25	NELFA (ENSMNEG00000029249) #26	ENSMNEG00000040986	C4orf48 (ENSMNEG00000044160) #27	NAT8L (ENSMNEG00000029002) #28	POLN (ENSMNEG00000044077) #29	ENSMNEG00000034392	HAUS3 (ENSMNEG00000031199) #31	MXD4 (ENSMNEG00000036831) #32	ZFYVE28 (ENSMNEG00000039840) #33	CFAP99 (ENSMNEG00000030381) #35	RNF4 (ENSMNEG00000035146) #36	FAM193A (ENSMNEG00000045102) #37
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00910000146990	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a.g #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000000703.h.h.a	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00910000148326	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37
Cercopithecinae_d	ANCESTRAL SPECIES	85	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00960000188067	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00910000146990	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a.g #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Drill	MODERN SPECIES	1719	TMEM175 (ENSMLEG00000014183)	DGKQ (ENSMLEG00000021202)	SLC26A1 (ENSMLEG00000037428) #7	IDUA (ENSMLEG00000040558) #8	FGFRL1 (ENSMLEG00000037900) #9	ENSMLEG00000028284	ENSMLEG00000032227 #12	SPON2 (ENSMLEG00000002232) #13	CTBP1 (ENSMLEG00000030520) #14	MAEA (ENSMLEG00000039505) #15	ENSMLEG00000038826	UVSSA (ENSMLEG00000007158) #16	FAM53A (ENSMLEG00000035332)	SLBP (ENSMLEG00000024639) #20	TMEM129 (ENSMLEG00000040279) #21	TACC3 (ENSMLEG00000010263) #22	FGFR3 (ENSMLEG00000030618) #23	ENSMLEG00000040964 #24	NSD2 (ENSMLEG00000037492) #25	NELFA (ENSMLEG00000031010) #26	C4orf48 (ENSMLEG00000032446) #27	ENSMLEG00000041510 #28	ENSMLEG00000032508	POLN (ENSMLEG00000038809) #29	HAUS3 (ENSMLEG00000035756) #31	MXD4 (ENSMLEG00000021543) #32	ZFYVE28 (ENSMLEG00000026808) #33	CFAP99 (ENSMLEG00000042081) #35	RNF4 (ENSMLEG00000038069) #36	ENSMLEG00000011279	FAM193A (ENSMLEG00000042643) #37
Sooty mangabey	MODERN SPECIES	649	SLC26A1 (ENSCATG00000014542) #7	IDUA (ENSCATG00000009650) #8	FGFRL1 (ENSCATG00000036121) #9	ENSCATG00000035612	ENSCATG00000044938	ENSCATG00000031977 #12	SPON2 (ENSCATG00000036451) #13	CTBP1 (ENSCATG00000035745) #14	MAEA (ENSCATG00000019101) #15	ENSCATG00000041571	UVSSA (ENSCATG00000010984) #16	NKX1-1 (ENSCATG00000042002) #17	FAM53A (ENSCATG00000044777)	SLBP (ENSCATG00000029173) #20	TMEM129 (ENSCATG00000029726) #21	TACC3 (ENSCATG00000029112) #22	FGFR3 (ENSCATG00000033697) #23	ENSCATG00000042406 #24	NSD2 (ENSCATG00000013442) #25	NELFA (ENSCATG00000036998) #26	C4orf48 (ENSCATG00000036109) #27	NAT8L (ENSCATG00000039077) #28	ENSCATG00000036129	POLN (ENSCATG00000038015) #29	HAUS3 (ENSCATG00000038591) #31	MXD4 (ENSCATG00000037468) #32	ZFYVE28 (ENSCATG00000043569) #33	CFAP99 (ENSCATG00000015552) #35	RNF4 (ENSCATG00000035992) #36	FAM193A (ENSCATG00000042635) #37	ENSCATG00000012185
Olive baboon	MODERN SPECIES	13	ENSPANG00000047577	GAK (ENSPANG00000011910)	TMEM175 (ENSPANG00000020176)	ENSPANG00000016992	IDUA (ENSPANG00000007828) #8	FGFRL1 (ENSPANG00000040655) #9	RNF212 (ENSPANG00000011989) #11	SPON2 (ENSPANG00000013162) #13	CTBP1 (ENSPANG00000005494) #14	MAEA (ENSPANG00000024432) #15	UVSSA (ENSPANG00000019190) #16	NKX1-1 (ENSPANG00000035702) #17	FAM53A (ENSPANG00000020344)	SLBP (ENSPANG00000004932) #20	TMEM129 (ENSPANG00000005178) #21	TACC3 (ENSPANG00000007581) #22	FGFR3 (ENSPANG00000024533) #23	LETM1 (ENSPANG00000024554) #24	NSD2 (ENSPANG00000022789) #25	NELFA (ENSPANG00000019016) #26	ENSPANG00000029835	C4orf48 (ENSPANG00000006016) #27	POLN (ENSPANG00000000640) #29	HAUS3 (ENSPANG00000007327) #31	ENSPANG00000049266	MXD4 (ENSPANG00000024535) #32	ZFYVE28 (ENSPANG00000001128) #33	CFAP99 (ENSPANG00000034047) #35	RNF4 (ENSPANG00000013408) #36	FAM193A (ENSPANG00000006875) #37	TNIP2 (ENSPANG00000019351)
Vervet Monkey	MODERN SPECIES	19	TMEM175 (ENSCSAG00000015363)	DGKQ (ENSCSAG00000015416)	SLC26A1 (ENSCSAG00000015468) #7	IDUA (ENSCSAG00000015497) #8	FGFRL1 (ENSCSAG00000015508) #9	RNF212 (ENSCSAG00000015539) #11	ENSCSAG00000015572 #12	SPON2 (ENSCSAG00000015578) #13	CTBP1 (ENSCSAG00000015583) #14	MAEA (ENSCSAG00000015589) #15	UVSSA (ENSCSAG00000015594) #16	NKX1-1 (ENSCSAG00000015596) #17	FAM53A (ENSCSAG00000015598)	SLBP (ENSCSAG00000015628) #20	TMEM129 (ENSCSAG00000015634) #21	TACC3 (ENSCSAG00000015639) #22	FGFR3 (ENSCSAG00000015647) #23	LETM1 (ENSCSAG00000015656) #24	NSD2 (ENSCSAG00000015664) #25	NELFA (ENSCSAG00000015669) #26	C4orf48 (ENSCSAG00000015674) #27	NAT8L (ENSCSAG00000015681) #28	POLN (ENSCSAG00000015716) #29	HAUS3 (ENSCSAG00000015734) #31	MXD4 (ENSCSAG00000015741) #32	ZFYVE28 (ENSCSAG00000015744) #33	CFAP99 (ENSCSAG00000015752) #35	FAM193A (ENSCSAG00000015766) #37	TNIP2 (ENSCSAG00000015771)	SH3BP2 (ENSCSAG00000015782)	ADD1 (ENSCSAG00000015789)
Rhinopithecus	ANCESTRAL SPECIES	135													ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a.g #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000000703.g.a.c.b	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00650000094590	ENSGT01080000257748.b	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36
Black snub-nosed monkey	MODERN SPECIES	539													FAM53A (ENSRBIG00000036916)	SLBP (ENSRBIG00000039159) #20	TMEM129 (ENSRBIG00000015368) #21	TACC3 (ENSRBIG00000042233) #22	FGFR3 (ENSRBIG00000040633) #23	LETM1 (ENSRBIG00000038284) #24	NSD2 (ENSRBIG00000043171) #25	NELFA (ENSRBIG00000031633) #26	ENSRBIG00000037817	C4orf48 (ENSRBIG00000037248) #27	ENSRBIG00000044373 #28	POLN (ENSRBIG00000007947) #29	ENSRBIG00000041367	HAUS3 (ENSRBIG00000037222) #31	MXD4 (ENSRBIG00000043500) #32	ZFYVE28 (ENSRBIG00000020333) #33	CFAP99 (ENSRBIG00000035346) #35	RNF4 (ENSRBIG00000027423) #36	CDCP1 (ENSRBIG00000030951)
Golden snub-nosed monkey	MODERN SPECIES	2481													FAM53A (ENSRROG00000028469)	SLBP (ENSRROG00000030081) #20	TMEM129 (ENSRROG00000041532) #21	TACC3 (ENSRROG00000039140) #22	FGFR3 (ENSRROG00000042585) #23	LETM1 (ENSRROG00000038867) #24	NSD2 (ENSRROG00000033896) #25	NELFA (ENSRROG00000040024) #26	ENSRROG00000017138	C4orf48 (ENSRROG00000029831) #27	ENSRROG00000020413 #28	POLN (ENSRROG00000045711) #29	ENSRROG00000031302	HAUS3 (ENSRROG00000033454) #31	MXD4 (ENSRROG00000040089) #32	ZFYVE28 (ENSRROG00000026858) #33	CFAP99 (ENSRROG00000041025) #35	RNF4 (ENSRROG00000038892) #36	FAM193A (ENSRROG00000033008) #37
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00390000015667	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342.j #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318.w #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Cebidae	ANCESTRAL SPECIES	4	ENSGT00390000015667	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342.j #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318.w #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Marmoset	MODERN SPECIES	15	GAK (ENSCJAG00000053012)	TMEM175 (ENSCJAG00000001891)	DGKQ (ENSCJAG00000001866)	SLC26A1 (ENSCJAG00000001864) #7	IDUA (ENSCJAG00000001838) #8	FGFRL1 (ENSCJAG00000001812) #9	ENSCJAG00000082677	ENSCJAG00000012473 #12	SPON2 (ENSCJAG00000048623) #13	ENSCJAG00000001565 #14	MAEA (ENSCJAG00000078979) #15	UVSSA (ENSCJAG00000041289) #16	NKX1-1 (ENSCJAG00000079323) #17	FAM53A (ENSCJAG00000001781)	SLBP (ENSCJAG00000001790) #20	TACC3 (ENSCJAG00000001805) #22	FGFR3 (ENSCJAG00000001819) #23	ENSCJAG00000059838	LETM1 (ENSCJAG00000001859) #24	NSD2 (ENSCJAG00000001876) #25	NELFA (ENSCJAG00000039975) #26	C4orf48 (ENSCJAG00000044010) #27	NAT8L (ENSCJAG00000014504) #28	HAUS3 (ENSCJAG00000036903) #31	MXD4 (ENSCJAG00000066421) #32	ZFYVE28 (ENSCJAG00000038192) #33	CFAP99 (ENSCJAG00000038947) #35	RNF4 (ENSCJAG00000014371) #36	ENSCJAG00000057846	FAM193A (ENSCJAG00000014343) #37	TNIP2 (ENSCJAG00000014338)
Cebidae_a	ANCESTRAL SPECIES	34	ENSGT00390000015667	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342.j #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318.x #36	ENSGT00390000010318.w #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Bolivian squirrel monkey	MODERN SPECIES	108	GAK (ENSSBOG00000026420)	TMEM175 (ENSSBOG00000023050)	DGKQ (ENSSBOG00000028901)	SLC26A1 (ENSSBOG00000030545) #7	IDUA (ENSSBOG00000024010) #8	FGFRL1 (ENSSBOG00000030072) #9	ENSSBOG00000026401	ENSSBOG00000018159 #12	SPON2 (ENSSBOG00000031498) #13	CTBP1 (ENSSBOG00000009891) #14	MAEA (ENSSBOG00000030338) #15	ENSSBOG00000029534 #16	FAM53A (ENSSBOG00000034926)	SLBP (ENSSBOG00000033897) #20	TMEM129 (ENSSBOG00000035214) #21	TACC3 (ENSSBOG00000022484) #22	FGFR3 (ENSSBOG00000028613) #23	LETM1 (ENSSBOG00000027558) #24	NSD2 (ENSSBOG00000020624) #25	NELFA (ENSSBOG00000024481) #26	ENSSBOG00000021831 #28	POLN (ENSSBOG00000029730) #29	HAUS3 (ENSSBOG00000035151) #31	MXD4 (ENSSBOG00000020590) #32	ZFYVE28 (ENSSBOG00000024678) #33	CFAP99 (ENSSBOG00000026143) #35	ENSSBOG00000010070	RNF4 (ENSSBOG00000031127) #36	FAM193A (ENSSBOG00000035392) #37	ENSSBOG00000028277	SH3BP2 (ENSSBOG00000004638)
Capuchin	MODERN SPECIES	117	TMEM175 (ENSCCAG00000032889)	DGKQ (ENSCCAG00000030615)	SLC26A1 (ENSCCAG00000026035) #7	IDUA (ENSCCAG00000007900) #8	FGFRL1 (ENSCCAG00000032864) #9	RNF212 (ENSCCAG00000037676) #11	ENSCCAG00000025209 #12	SPON2 (ENSCCAG00000032899) #13	CTBP1 (ENSCCAG00000037066) #14	ENSCCAG00000022660 #15	UVSSA (ENSCCAG00000032486) #16	NKX1-1 (ENSCCAG00000034329) #17	FAM53A (ENSCCAG00000005420)	SLBP (ENSCCAG00000026134) #20	TMEM129 (ENSCCAG00000021775) #21	TACC3 (ENSCCAG00000037097) #22	FGFR3 (ENSCCAG00000029787) #23	LETM1 (ENSCCAG00000022623) #24	NSD2 (ENSCCAG00000036562) #25	NELFA (ENSCCAG00000025280) #26	C4orf48 (ENSCCAG00000016052) #27	NAT8L (ENSCCAG00000033445) #28	POLN (ENSCCAG00000026095) #29	HAUS3 (ENSCCAG00000037575) #31	MXD4 (ENSCCAG00000026915) #32	ZFYVE28 (ENSCCAG00000019800) #33	ADRA2C (ENSCCAG00000033349)	ENSCCAG00000035547	HMX1 (ENSCCAG00000029215)	ENSCCAG00000031132	CPZ (ENSCCAG00000037917)
Mas night monkey	MODERN SPECIES	1118	RGS12 (ENSANAG00000033222)	MSANTD1 (ENSANAG00000037096)	HTT (ENSANAG00000031258)	ENSANAG00000035544	NOP14 (ENSANAG00000022601)	ENSANAG00000026094	ADD1 (ENSANAG00000019463)	SH3BP2 (ENSANAG00000033091)	CTBP1 (ENSANAG00000027809) #14	MAEA (ENSANAG00000036521) #15	UVSSA (ENSANAG00000020676) #16	NKX1-1 (ENSANAG00000034667) #17	FAM53A (ENSANAG00000022971)	SLBP (ENSANAG00000034769) #20	TMEM129 (ENSANAG00000036729) #21	TACC3 (ENSANAG00000028183) #22	FGFR3 (ENSANAG00000026958) #23	LETM1 (ENSANAG00000037304) #24	NSD2 (ENSANAG00000035180) #25	NELFA (ENSANAG00000027096) #26	C4orf48 (ENSANAG00000032965) #27	NAT8L (ENSANAG00000026210) #28	POLN (ENSANAG00000025375) #29	HAUS3 (ENSANAG00000029444) #31	MXD4 (ENSANAG00000026969) #32	ENSANAG00000026828 #33	ENSANAG00000037948 #33	CFAP99 (ENSANAG00000029171) #35	RNF4 (ENSANAG00000034781) #36	FAM193A (ENSANAG00000032586) #37	TNIP2 (ENSANAG00000033040)
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Tree shrew	MODERN SPECIES	3161																ENSTBEG00000003385 #22
Glires	ANCESTRAL SPECIES	8	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00940000158858 #22
Pika	MODERN SPECIES	5281																ENSOPRG00000009013 #22
Rodentia	ANCESTRAL SPECIES	13	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Rodentia_A	ANCESTRAL SPECIES	20	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Sciuridae	ANCESTRAL SPECIES	19	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Marmotini	ANCESTRAL SPECIES	26	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318.o #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Marmotini_b	ANCESTRAL SPECIES	33	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318.o #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Arctic ground squirrel	MODERN SPECIES	759														FAM53A (ENSUPAG00010002811)	ENSUPAG00010002700 #20	TACC3 (ENSUPAG00010002681) #22	FGFR3 (ENSUPAG00010002175) #23	ENSUPAG00010002097 #24	NSD2 (ENSUPAG00010001901) #25	NELFA (ENSUPAG00010001867) #26	C4orf48 (ENSUPAG00010001846) #27	NAT8L (ENSUPAG00010001835) #28
Squirrel	MODERN SPECIES	77	TMEM175 (ENSSTOG00000014558)	DGKQ (ENSSTOG00000014572)	SLC26A1 (ENSSTOG00000029038) #7	IDUA (ENSSTOG00000006937) #8	FGFRL1 (ENSSTOG00000022392) #9	ENSSTOG00000031016 #11	ENSSTOG00000028967 #12	SPON2 (ENSSTOG00000025443) #13	CTBP1 (ENSSTOG00000005891) #14	MAEA (ENSSTOG00000005706) #15	UVSSA (ENSSTOG00000005729) #16	ENSSTOG00000031320 #17	FAM53A (ENSSTOG00000023406)	SLBP (ENSSTOG00000003262) #20	TMEM129 (ENSSTOG00000020817) #21	TACC3 (ENSSTOG00000012665) #22	FGFR3 (ENSSTOG00000000815) #23	LETM1 (ENSSTOG00000014167) #24	NSD2 (ENSSTOG00000003369) #25	NELFA (ENSSTOG00000003421) #26	ENSSTOG00000024159 #28	POLN (ENSSTOG00000001059) #29	HAUS3 (ENSSTOG00000020375) #31	MXD4 (ENSSTOG00000028770) #32	ZFYVE28 (ENSSTOG00000012220) #33	CFAP99 (ENSSTOG00000032892) #35	ENSSTOG00000011101 #36	FAM193A (ENSSTOG00000007426) #37	TNIP2 (ENSSTOG00000007444)	SH3BP2 (ENSSTOG00000028939)	ADD1 (ENSSTOG00000009726)
Alpin marmot	MODERN SPECIES	9	CPLX1 (ENSMMMG00000008671)	GAK (ENSMMMG00000008679)	ENSMMMG00000008701	TMEM175 (ENSMMMG00000008703)	SLC26A1 (ENSMMMG00000008883) #7	IDUA (ENSMMMG00000008893) #8	ENSMMMG00000009027	ENSMMMG00000009060 #12	SPON2 (ENSMMMG00000009081) #13	CTBP1 (ENSMMMG00000009094) #14	MAEA (ENSMMMG00000009131) #15	UVSSA (ENSMMMG00000009148) #16	FAM53A (ENSMMMG00000009208)	SLBP (ENSMMMG00000009227) #20	TMEM129 (ENSMMMG00000009228) #21	TACC3 (ENSMMMG00000009234) #22	FGFR3 (ENSMMMG00000009271) #23	ENSMMMG00000010030 #24	NSD2 (ENSMMMG00000010052) #25	NELFA (ENSMMMG00000010244) #26	ENSMMMG00000010260 #28	POLN (ENSMMMG00000010281) #29	HAUS3 (ENSMMMG00000010462) #31	MXD4 (ENSMMMG00000010466) #32	ZFYVE28 (ENSMMMG00000010480) #33	CFAP99 (ENSMMMG00000010512) #35	RNF4 (ENSMMMG00000010533) #36	FAM193A (ENSMMMG00000010560) #37	TNIP2 (ENSMMMG00000010616)	SH3BP2 (ENSMMMG00000010638)	ADD1 (ENSMMMG00000010678)
Eurasian red squirrel	MODERN SPECIES	18	GAK (ENSSVLG00005012944)	TMEM175 (ENSSVLG00005012860)	SLC26A1 (ENSSVLG00005012770) #7	IDUA (ENSSVLG00005012525) #8	FGFRL1 (ENSSVLG00005012435) #9	ENSSVLG00005012104 #12	SPON2 (ENSSVLG00005012045) #13	CTBP1 (ENSSVLG00005011900) #14	ENSSVLG00005011867	MAEA (ENSSVLG00005011623) #15	UVSSA (ENSSVLG00005011273) #16	NKX1-1 (ENSSVLG00005011200) #17	FAM53A (ENSSVLG00005011171)	SLBP (ENSSVLG00005010930) #20	TMEM129 (ENSSVLG00005010840) #21	TACC3 (ENSSVLG00005010736) #22	FGFR3 (ENSSVLG00005018602) #23	ENSSVLG00005018420 #24	NSD2 (ENSSVLG00005018333) #25	NELFA (ENSSVLG00005018189) #26	C4orf48 (ENSSVLG00005018142) #27	NAT8L (ENSSVLG00005018097) #28	ENSSVLG00005018048	ENSSVLG00005018005	POLN (ENSSVLG00005017739) #29	HAUS3 (ENSSVLG00005017655) #31	MXD4 (ENSSVLG00005017609) #32	ENSSVLG00005017576 #33	ENSSVLG00005017470 #33	CFAP99 (ENSSVLG00005017288) #35	RNF4 (ENSSVLG00005017190) #36
Hystricomorpha	ANCESTRAL SPECIES	26	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043.f #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00940000164052	ENSGT00510000046908.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	23	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043.f #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00940000164052	ENSGT00390000002216
Hystricomorpha_b	ANCESTRAL SPECIES	37	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043.f #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00940000164052	ENSGT00390000002216
Long-tailed chinchilla	MODERN SPECIES	221	TMEM175 (ENSCLAG00000010483)	DGKQ (ENSCLAG00000011985)	SLC26A1 (ENSCLAG00000006725) #7	IDUA (ENSCLAG00000011871) #8	FGFRL1 (ENSCLAG00000007552) #9	ENSCLAG00000008587 #11	ENSCLAG00000010654 #12	SPON2 (ENSCLAG00000006806) #13	CTBP1 (ENSCLAG00000008653) #14	MAEA (ENSCLAG00000013403) #15	UVSSA (ENSCLAG00000008812) #16	ENSCLAG00000007213 #17	FAM53A (ENSCLAG00000007294)	SLBP (ENSCLAG00000008157) #20	TMEM129 (ENSCLAG00000010127) #21	TACC3 (ENSCLAG00000011683) #22	FGFR3 (ENSCLAG00000006986) #23	LETM1 (ENSCLAG00000010785) #24	NSD2 (ENSCLAG00000014450) #25	NELFA (ENSCLAG00000012299) #26	C4orf48 (ENSCLAG00000009344) #27	ENSCLAG00000009488 #28	POLN (ENSCLAG00000010355) #29	HAUS3 (ENSCLAG00000010866) #31	MXD4 (ENSCLAG00000011445) #32	ZFYVE28 (ENSCLAG00000009540) #33	CFAP99 (ENSCLAG00000012930) #35	RNF4 (ENSCLAG00000014072) #36	FAM193A (ENSCLAG00000014296) #37	ENSCLAG00000006931	SH3BP2 (ENSCLAG00000008009)
Degu	MODERN SPECIES	47	TMEM175 (ENSODEG00000013374)	DGKQ (ENSODEG00000012712)	SLC26A1 (ENSODEG00000015117) #7	IDUA (ENSODEG00000012062) #8	FGFRL1 (ENSODEG00000011612) #9	ENSODEG00000012265 #11	ENSODEG00000012726 #12	SPON2 (ENSODEG00000012066) #13	ENSODEG00000013011 #14	MAEA (ENSODEG00000012556) #15	UVSSA (ENSODEG00000011757) #16	FAM53A (ENSODEG00000011180)	ENSODEG00000012272	SLBP (ENSODEG00000012641) #20	ENSODEG00000011155 #21	ENSODEG00000012973 #22	ENSODEG00000012582 #23	LETM1 (ENSODEG00000012866) #24	NSD2 (ENSODEG00000012080) #25	NELFA (ENSODEG00000011122) #26	C4orf48 (ENSODEG00000011093) #27	ENSODEG00000011723 #28	ENSODEG00000011259	POLN (ENSODEG00000011265) #29	HAUS3 (ENSODEG00000011986) #31	MXD4 (ENSODEG00000011512) #32	ENSODEG00000011568 #33	CFAP99 (ENSODEG00000011882) #35	RNF4 (ENSODEG00000011133) #36	ENSODEG00000010562	FAM193A (ENSODEG00000010949) #37
Guinea pig	MODERN SPECIES	24													FAM53A (ENSCPOG00000033116)	SLBP (ENSCPOG00000000031) #20	TMEM129 (ENSCPOG00000000032) #21	TACC3 (ENSCPOG00000023531) #22	FGFR3 (ENSCPOG00000025595) #23	LETM1 (ENSCPOG00000011337) #24	NSD2 (ENSCPOG00000007513) #25	NELFA (ENSCPOG00000019715) #26	C4orf48 (ENSCPOG00000031206) #27	ENSCPOG00000038761 #28	POLN (ENSCPOG00000001665) #29	HAUS3 (ENSCPOG00000021994) #31	MXD4 (ENSCPOG00000022492) #32	ZFYVE28 (ENSCPOG00000027392) #33	CFAP99 (ENSCPOG00000040209) #35	RNF4 (ENSCPOG00000030545) #36	FAM193A (ENSCPOG00000004013) #37	ENSCPOG00000024404	SH3BP2 (ENSCPOG00000009421)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	1	AMTN (ENSHGLG00000003589)	ENSHGLG00000045507	ODAM (ENSHGLG00000001598)	ENSHGLG00000038103	ENSHGLG00000028349	SULT1E1 (ENSHGLG00000000404)	ENSHGLG00000000269	ENSHGLG00000003092	ENSHGLG00000002184	ENSHGLG00000047874	ENSHGLG00000002082	ENSHGLG00000001108	ENSHGLG00000006663	ENSHGLG00000005955 #20	TMEM129 (ENSHGLG00000046034) #21	ENSHGLG00000004881 #22	FGFR3 (ENSHGLG00000004816) #23	LETM1 (ENSHGLG00000004719) #24	ENSHGLG00000044127	NELFA (ENSHGLG00000004622) #26	ENSHGLG00000020481	ENSHGLG00000010063 #27	POLN (ENSHGLG00000009000) #29	HAUS3 (ENSHGLG00000051007) #31	ENSHGLG00000047915	RNF4 (ENSHGLG00000046605) #36	ENSHGLG00000006269	ENSHGLG00000037168	TNIP2 (ENSHGLG00000005230)	SH3BP2 (ENSHGLG00000005188)	ADD1 (ENSHGLG00000005103)
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000019892	ENSHGLG00000047327	ENSHGLG00000044426	ENSHGLG00000041060	ENSHGLG00000038259	ENSHGLG00000046083	ENSHGLG00000000188	ENSHGLG00000007029	ENSHGLG00000042678	ENSHGLG00000032834	ENSHGLG00000037631	ENSHGLG00000000175	ENSHGLG00000038645	ENSHGLG00000034367	ENSHGLG00000042766	ENSHGLG00000032924 #22	ENSHGLG00000000161	ENSHGLG00000032127	ENSHGLG00000039781	PABPC5 (ENSHGLG00000047468)	ENSHGLG00000035133	ENSHGLG00000000267	ENSHGLG00000020027	ENSHGLG00000032760	ENSHGLG00000044864	ENSHGLG00000000237	ENSHGLG00000051013	ENSHGLG00000000569	ENSHGLG00000046264	ENSHGLG00000014839	ENSHGLG00000049697
Rodentia_B	ANCESTRAL SPECIES	19	ENSGT00390000015667	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Myomorpha	ANCESTRAL SPECIES	19	ENSGT00390000015667	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Muroidea	ANCESTRAL SPECIES	17	ENSGT00390000015667	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00940000154110.a	ENSGT00940000171945	ENSGT00390000013484	ENSGT00520000055626.a	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00390000012071	ENSGT00940000154110.a	ENSGT00390000013484	ENSGT00520000055626.a	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00940000154110.a	ENSGT00390000013484	ENSGT00520000055626.a	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000170970	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Chinese hamster chok1gshd	MODERN SPECIES	44	Sfi1 (ENSCGRG00001019137)	Pisd (ENSCGRG00001024345)	Prr14l (ENSCGRG00001016693)	Depdc5 (ENSCGRG00001024582)	Ywhah (ENSCGRG00001020682)	Slc5a1 (ENSCGRG00001023507)	Spon2 (ENSCGRG00001018510) #13	Ctbp1 (ENSCGRG00001000660) #14	ENSCGRG00001024773	Maea (ENSCGRG00001001581) #15	Uvssa (ENSCGRG00001002995) #16	Nkx1-1 (ENSCGRG00001013497) #17	Fam53a (ENSCGRG00001022457)	ENSCGRG00001009760 #20	Tmem129 (ENSCGRG00001014269) #21	Tacc3 (ENSCGRG00001022858) #22	Fgfr3 (ENSCGRG00001014679) #23	Letm1 (ENSCGRG00001022378) #24	ENSCGRG00001022523	Nsd2 (ENSCGRG00001008668) #25	Nelfa (ENSCGRG00001018745) #26	Gm1673 (ENSCGRG00001020043) #27	Nat8l (ENSCGRG00001023978) #28	Poln (ENSCGRG00001007876) #29	Haus3 (ENSCGRG00001006121) #31	Mxd4 (ENSCGRG00001011783) #32	Zfyve28 (ENSCGRG00001015693) #33	Cfap99 (ENSCGRG00001018964) #35	Rnf4 (ENSCGRG00001022472) #36	Fam193a (ENSCGRG00001011437) #37	Tnip2 (ENSCGRG00001018278)
Golden Hamster	MODERN SPECIES	632	Patz1 (ENSMAUG00000004129)	Drg1 (ENSMAUG00000018239)	Eif4enif1 (ENSMAUG00000002370)	Sfi1 (ENSMAUG00000007963)	ENSMAUG00000002955	Depdc5 (ENSMAUG00000003792)	Slc5a1 (ENSMAUG00000014523)	Spon2 (ENSMAUG00000009554) #13	Ctbp1 (ENSMAUG00000018160) #14	ENSMAUG00000011117	Uvssa (ENSMAUG00000017816) #16	Nkx1-1 (ENSMAUG00000013123) #17	Fam53a (ENSMAUG00000018409)	Slbp (ENSMAUG00000009490) #20	Tmem129 (ENSMAUG00000013066) #21	Tacc3 (ENSMAUG00000008651) #22	Fgfr3 (ENSMAUG00000012735) #23	Letm1 (ENSMAUG00000007831) #24	Nsd2 (ENSMAUG00000015700) #25	Nelfa (ENSMAUG00000022097) #26	Gm1673 (ENSMAUG00000019500) #27	ENSMAUG00000020607 #28	Poln (ENSMAUG00000008534) #29	Haus3 (ENSMAUG00000000818) #31	Mxd4 (ENSMAUG00000014477) #32	ENSMAUG00000016411 #33	Cfap99 (ENSMAUG00000018621) #35	Rnf4 (ENSMAUG00000022006) #36	Fam193a (ENSMAUG00000013458) #37	Tnip2 (ENSMAUG00000000863)	Sh3bp2 (ENSMAUG00000014154)
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00390000012071	ENSGT00940000154110.a	ENSGT00390000013484	ENSGT00520000055626.a	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Northern American deer mouse	MODERN SPECIES	1	Sfi1 (ENSPEMG00000026201)	Pisd (ENSPEMG00000009121)	ENSPEMG00000011362	Depdc5 (ENSPEMG00000017938)	ENSPEMG00000024597	Slc5a1 (ENSPEMG00000018099)	ENSPEMG00000030935	Spon2 (ENSPEMG00000012059) #13	Ctbp1 (ENSPEMG00000018643) #14	Maea (ENSPEMG00000009131) #15	Uvssa (ENSPEMG00000010756) #16	Nkx1-1 (ENSPEMG00000016893) #17	Fam53a (ENSPEMG00000008959)	Slbp (ENSPEMG00000018369) #20	Tmem129 (ENSPEMG00000000690) #21	Tacc3 (ENSPEMG00000012388) #22	Fgfr3 (ENSPEMG00000006894) #23	Letm1 (ENSPEMG00000000609) #24	Nsd2 (ENSPEMG00000017277) #25	Nelfa (ENSPEMG00000016134) #26	Gm1673 (ENSPEMG00000017743) #27	ENSPEMG00000026053 #28	Poln (ENSPEMG00000008981) #29	Mxd4 (ENSPEMG00000015018) #32	Zfyve28 (ENSPEMG00000003088) #33	Cfap99 (ENSPEMG00000000404) #35	Rnf4 (ENSPEMG00000017150) #36	Fam193a (ENSPEMG00000000297) #37	Tnip2 (ENSPEMG00000013340)	Sh3bp2 (ENSPEMG00000015767)	Add1 (ENSPEMG00000008717)
Prairie vole	MODERN SPECIES	89	Drg1 (ENSMOCG00000005245)	Eif4enif1 (ENSMOCG00000020588)	Sfi1 (ENSMOCG00000014552)	Pisd (ENSMOCG00000017891)	ENSMOCG00000003569	Depdc5 (ENSMOCG00000013118)	Ywhah (ENSMOCG00000015489)	Spon2 (ENSMOCG00000009741) #13	Ctbp1 (ENSMOCG00000015873) #14	Maea (ENSMOCG00000014476) #15	Uvssa (ENSMOCG00000021608) #16	Nkx1-1 (ENSMOCG00000000592) #17	Fam53a (ENSMOCG00000009866)	Slbp (ENSMOCG00000015826) #20	Tmem129 (ENSMOCG00000020389) #21	Tacc3 (ENSMOCG00000008214) #22	Fgfr3 (ENSMOCG00000013655) #23	Letm1 (ENSMOCG00000012830) #24	Nsd2 (ENSMOCG00000008250) #25	Nelfa (ENSMOCG00000000669) #26	Gm1673 (ENSMOCG00000020620) #27	Nat8l (ENSMOCG00000017447) #28	Poln (ENSMOCG00000009309) #29	Pcdh20 (ENSMOCG00000008392)	Tdrd3 (ENSMOCG00000012962)	Diaph3 (ENSMOCG00000012431)	ENSMOCG00000011873	Pcdh17 (ENSMOCG00000004856)	ENSMOCG00000019804	Olfm4 (ENSMOCG00000016963)	Pcdh8 (ENSMOCG00000020531)
Murinae	ANCESTRAL SPECIES	12	ENSGT00940000154110.a	ENSGT00940000171945	ENSGT00390000013484	ENSGT00520000055626.a	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Mus	ANCESTRAL SPECIES	14	ENSGT00940000171945	ENSGT00390000013484	ENSGT00520000055626.a	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00860000135700	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000154920	ENSGT00390000013484	ENSGT00520000055626.a	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00860000135700	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000154920	ENSGT00390000013484	ENSGT00520000055626.a	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00860000135700	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Mouse	MODERN SPECIES	14	Ppp1cb (ENSMUSG00000014956)	Yes1 (ENSMUSG00000014932)	Pisd (ENSMUSG00000023452)	Prr14l (ENSMUSG00000054280)	Depdc5 (ENSMUSG00000037426)	Ywhah (ENSMUSG00000018965)	Slc5a1 (ENSMUSG00000011034)	Spon2 (ENSMUSG00000037379) #13	Ctbp1 (ENSMUSG00000037373) #14	Maea (ENSMUSG00000079562) #15	Uvssa (ENSMUSG00000037355) #16	Nkx1-1 (ENSMUSG00000029112) #17	Fam53a (ENSMUSG00000037339)	Slbp (ENSMUSG00000004642) #20	Tmem129 (ENSMUSG00000019295) #21	Tacc3 (ENSMUSG00000037313) #22	Fgfr3 (ENSMUSG00000054252) #23	Letm1 (ENSMUSG00000005299) #24	Nsd2 (ENSMUSG00000057406) #25	Nelfa (ENSMUSG00000029111) #26	Gm1673 (ENSMUSG00000070858) #27	Nat8l (ENSMUSG00000048142) #28	Poln (ENSMUSG00000045102) #29	Haus3 (ENSMUSG00000079555) #31	Mxd4 (ENSMUSG00000037235) #32	Zfyve28 (ENSMUSG00000037224) #33	Cfap99 (ENSMUSG00000109572) #35	Rnf4 (ENSMUSG00000029110) #36	Fam193a (ENSMUSG00000037210) #37	Tnip2 (ENSMUSG00000059866)	Sh3bp2 (ENSMUSG00000054520)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000154920	ENSGT00390000013484	ENSGT00520000055626.a	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00860000135700	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Steppe mouse	MODERN SPECIES	3132				Depdc5 (ENSMSIG00000019758)	Ywhah (ENSMSIG00000020077)	Slc5a1 (ENSMSIG00000020102)	Spon2 (ENSMSIG00000020130) #13	ENSMSIG00000020152 #14	Maea (ENSMSIG00000020294) #15	Uvssa (ENSMSIG00000020327) #16	Nkx1-1 (ENSMSIG00000020362) #17	Fam53a (ENSMSIG00000020370)	ENSMSIG00000020391	Slbp (ENSMSIG00000020394) #20	Tmem129 (ENSMSIG00000020453) #21	ENSMSIG00000020463 #22	Fgfr3 (ENSMSIG00000020478) #23	Letm1 (ENSMSIG00000020902) #24	Nsd2 (ENSMSIG00000020943) #25	Nelfa (ENSMSIG00000021131) #26	ENSMSIG00000021161 #27	Nat8l (ENSMSIG00000021182) #28	Poln (ENSMSIG00000021195) #29	Haus3 (ENSMSIG00000021389) #31	ENSMSIG00000021408 #32	ENSMSIG00000021448	Zfyve28 (ENSMSIG00000021454) #33	Cfap99 (ENSMSIG00000021491) #35	ENSMSIG00000021509	ENSMSIG00000021525 #36	Fam193a (ENSMSIG00000021548) #37
spretus	MODERN SPECIES	14	Yes1 (MGP_SPRETEiJ_G0028100)	Pisd (MGP_SPRETEiJ_G0028101)	MGP_SPRETEiJ_G0028102	Depdc5 (MGP_SPRETEiJ_G0028103)	Ywhah (MGP_SPRETEiJ_G0028104)	Slc5a1 (MGP_SPRETEiJ_G0028105)	Spon2 (MGP_SPRETEiJ_G0028106) #13	Ctbp1 (MGP_SPRETEiJ_G0028107) #14	Maea (MGP_SPRETEiJ_G0028108) #15	Uvssa (MGP_SPRETEiJ_G0028109) #16	Nkx1-1 (MGP_SPRETEiJ_G0028110) #17	Fam53a (MGP_SPRETEiJ_G0028111)	MGP_SPRETEiJ_G0028112	Slbp (MGP_SPRETEiJ_G0028113) #20	Tmem129 (MGP_SPRETEiJ_G0028114) #21	Tacc3 (MGP_SPRETEiJ_G0028115) #22	Fgfr3 (MGP_SPRETEiJ_G0028116) #23	Letm1 (MGP_SPRETEiJ_G0028117) #24	Nsd2 (MGP_SPRETEiJ_G0028118) #25	Nelfa (MGP_SPRETEiJ_G0028119) #26	MGP_SPRETEiJ_G0028120 #27	Nat8l (MGP_SPRETEiJ_G0028121) #28	Poln (MGP_SPRETEiJ_G0028122) #29	Haus3 (MGP_SPRETEiJ_G0028123) #31	Mxd4 (MGP_SPRETEiJ_G0028124) #32	Zfyve28 (MGP_SPRETEiJ_G0028125) #33	Cfap99 (MGP_SPRETEiJ_G0028126) #35	Rnf4 (MGP_SPRETEiJ_G0028127) #36	Fam193a (MGP_SPRETEiJ_G0028128) #37	Tnip2 (MGP_SPRETEiJ_G0028129)	Sh3bp2 (MGP_SPRETEiJ_G0028130)
Ryukyu mouse	MODERN SPECIES	14	Yes1 (MGP_CAROLIEiJ_G0027104)	MGP_CAROLIEiJ_G0027105	Prr14l (MGP_CAROLIEiJ_G0027106)	Depdc5 (MGP_CAROLIEiJ_G0027107)	MGP_CAROLIEiJ_G0027108	Slc5a1 (MGP_CAROLIEiJ_G0027109)	Spon2 (MGP_CAROLIEiJ_G0027110) #13	Ctbp1 (MGP_CAROLIEiJ_G0027111) #14	Maea (MGP_CAROLIEiJ_G0027112) #15	Uvssa (MGP_CAROLIEiJ_G0027113) #16	Nkx1-1 (MGP_CAROLIEiJ_G0027114) #17	Fam53a (MGP_CAROLIEiJ_G0027115)	MGP_CAROLIEiJ_G0027116	Slbp (MGP_CAROLIEiJ_G0027117) #20	Tmem129 (MGP_CAROLIEiJ_G0027118) #21	Tacc3 (MGP_CAROLIEiJ_G0027119) #22	Fgfr3 (MGP_CAROLIEiJ_G0027120) #23	Letm1 (MGP_CAROLIEiJ_G0027121) #24	Nsd2 (MGP_CAROLIEiJ_G0027122) #25	Nelfa (MGP_CAROLIEiJ_G0027123) #26	MGP_CAROLIEiJ_G0027124 #27	Nat8l (MGP_CAROLIEiJ_G0027125) #28	Poln (MGP_CAROLIEiJ_G0027126) #29	Haus3 (MGP_CAROLIEiJ_G0027127) #31	Mxd4 (MGP_CAROLIEiJ_G0027128) #32	Zfyve28 (MGP_CAROLIEiJ_G0027129) #33	Cfap99 (MGP_CAROLIEiJ_G0027130) #35	Rnf4 (MGP_CAROLIEiJ_G0027131) #36	Fam193a (MGP_CAROLIEiJ_G0027132) #37	Tnip2 (MGP_CAROLIEiJ_G0027133)	Sh3bp2 (MGP_CAROLIEiJ_G0027134)
Shrew mouse	MODERN SPECIES	4	MGP_PahariEiJ_G0016888	Pisd (MGP_PahariEiJ_G0016889)	Prr14l (MGP_PahariEiJ_G0016890)	Depdc5 (MGP_PahariEiJ_G0016891)	Ywhah (MGP_PahariEiJ_G0016892)	Slc5a1 (MGP_PahariEiJ_G0016893)	Spon2 (MGP_PahariEiJ_G0016894) #13	Ctbp1 (MGP_PahariEiJ_G0016895) #14	Maea (MGP_PahariEiJ_G0016896) #15	Uvssa (MGP_PahariEiJ_G0016897) #16	Nkx1-1 (MGP_PahariEiJ_G0016898) #17	Fam53a (MGP_PahariEiJ_G0016899)	MGP_PahariEiJ_G0016900	Slbp (MGP_PahariEiJ_G0016901) #20	Tmem129 (MGP_PahariEiJ_G0016902) #21	MGP_PahariEiJ_G0016903 #22	Fgfr3 (MGP_PahariEiJ_G0016904) #23	MGP_PahariEiJ_G0016905	Nsd2 (MGP_PahariEiJ_G0016906) #25	Nelfa (MGP_PahariEiJ_G0016907) #26	MGP_PahariEiJ_G0016908 #27	Nat8l (MGP_PahariEiJ_G0016909) #28	Poln (MGP_PahariEiJ_G0016910) #29	Haus3 (MGP_PahariEiJ_G0016911) #31	Mxd4 (MGP_PahariEiJ_G0016912) #32	Zfyve28 (MGP_PahariEiJ_G0016913) #33	Cfap99 (MGP_PahariEiJ_G0016914) #35	MGP_PahariEiJ_G0016915 #36	Fam193a (MGP_PahariEiJ_G0016916) #37	Tnip2 (MGP_PahariEiJ_G0016917)	Sh3bp2 (MGP_PahariEiJ_G0016918)
Rat	MODERN SPECIES	5	Sfi1 (ENSRNOG00000018412)	Pisd (ENSRNOG00000018319)	Prr14l (ENSRNOG00000048891)	LOC100361879 (ENSRNOG00000045749)	Depdc5 (ENSRNOG00000018144)	Ywhah (ENSRNOG00000055471)	Slc5a1 (ENSRNOG00000017775)	Spon2 (ENSRNOG00000006033) #13	Ctbp1 (ENSRNOG00000005428) #14	Maea (ENSRNOG00000005397) #15	Uvssa (ENSRNOG00000005122) #16	Nkx1-1 (ENSRNOG00000005113) #17	Fam53a (ENSRNOG00000017548)	Slbp (ENSRNOG00000037162) #20	Tmem129 (ENSRNOG00000017329) #21	Tacc3 (ENSRNOG00000017259) #22	Fgfr3 (ENSRNOG00000016818) #23	Letm1 (ENSRNOG00000016427) #24	Nsd2 (ENSRNOG00000038140) #25	Nelfa (ENSRNOG00000015474) #26	RGD1560394 (ENSRNOG00000065022) #27	Nat8l (ENSRNOG00000049351) #28	Poln (ENSRNOG00000069005) #29	Mxd4 (ENSRNOG00000015033) #32	Zfyve28 (ENSRNOG00000014874) #33	Cfap99 (ENSRNOG00000058434) #35	Rnf4 (ENSRNOG00000013930) #36	Fam193a (ENSRNOG00000013832) #37	Tnip2 (ENSRNOG00000013805)	Sh3bp2 (ENSRNOG00000013747)	Add1 (ENSRNOG00000013039)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1177	Tmem175 (ENSNGAG00000020623)	Dgkq (ENSNGAG00000022655)	Idua (ENSNGAG00000023311) #8	Slc26a1 (ENSNGAG00000019448) #7	ENSNGAG00000019399 #9	Rnf212 (ENSNGAG00000019964) #11	Tmed11 (ENSNGAG00000003592) #12	Spon2 (ENSNGAG00000007051) #13	Ctbp1 (ENSNGAG00000010894) #14	Maea (ENSNGAG00000002281) #15	Uvssa (ENSNGAG00000012000) #16	Nkx1-1 (ENSNGAG00000013945) #17	ENSNGAG00000015315	Slbp (ENSNGAG00000020799) #20	Tmem129 (ENSNGAG00000017856) #21	Tacc3 (ENSNGAG00000017862) #22	Fgfr3 (ENSNGAG00000015713) #23	Letm1 (ENSNGAG00000000720) #24	Nsd2 (ENSNGAG00000010171) #25	Nelfa (ENSNGAG00000023963) #26	ENSNGAG00000014727	Gm1673 (ENSNGAG00000023348) #27	ENSNGAG00000002900 #28	Poln (ENSNGAG00000022997) #29	Haus3 (ENSNGAG00000014413) #31	Mxd4 (ENSNGAG00000016526) #32	ENSNGAG00000014521 #33	Cfap99 (ENSNGAG00000020586) #35	Rnf4 (ENSNGAG00000018375) #36	Fam193a (ENSNGAG00000021458) #37	Tnip2 (ENSNGAG00000020375)
Lesser Egyptian jerboa	MODERN SPECIES	58	Slc26a1 (ENSJJAG00000024417) #7	Idua (ENSJJAG00000010185) #8	Fgfrl1 (ENSJJAG00000012607) #9	ENSJJAG00000022256	Rnf212 (ENSJJAG00000023907) #11	Tmed11 (ENSJJAG00000021956) #12	Spon2 (ENSJJAG00000010729) #13	Ctbp1 (ENSJJAG00000022277) #14	Maea (ENSJJAG00000018909) #15	Uvssa (ENSJJAG00000000552) #16	Nkx1-1 (ENSJJAG00000017578) #17	ENSJJAG00000022694	ENSJJAG00000019010	ENSJJAG00000020549 #20	ENSJJAG00000015175 #21	Tacc3 (ENSJJAG00000015964) #22	Fgfr3 (ENSJJAG00000001873) #23	Letm1 (ENSJJAG00000024090) #24	Nsd2 (ENSJJAG00000012992) #25	Nelfa (ENSJJAG00000024237) #26	Gm1673 (ENSJJAG00000006076) #27	Nat8l (ENSJJAG00000024226) #28	Poln (ENSJJAG00000012540) #29	Haus3 (ENSJJAG00000013628) #31	ENSJJAG00000017036 #32	ENSJJAG00000000555 #33	Cfap99 (ENSJJAG00000019360) #35	ENSJJAG00000014107 #36	ENSJJAG00000000617	Fam193a (ENSJJAG00000013646) #37	Tnip2 (ENSJJAG00000021336)
Atlantogenata	ANCESTRAL SPECIES	108	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33
Afrotheria	ANCESTRAL SPECIES	135	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33
Afrotheria_a	ANCESTRAL SPECIES	137	ENSGT00940000159527	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b #7	ENSGT00390000015494 #8	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00390000000377 #16	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.a.b.a #24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33
Elephant	DUPLICATION
Elephant	MODERN SPECIES	164	GAK (ENSLAFG00000011882)	TMEM175 (ENSLAFG00000004166)	DGKQ (ENSLAFG00000004169)	SLC26A1 (ENSLAFG00000012880) #7	IDUA (ENSLAFG00000012872) #8	FGFRL1 (ENSLAFG00000012522) #9	ENSLAFG00000020574 #12	SPON2 (ENSLAFG00000031358) #13	CTBP1 (ENSLAFG00000016498) #14	MAEA (ENSLAFG00000001960) #15	UVSSA (ENSLAFG00000013335) #16	ENSLAFG00000025171 #17	FAM53A (ENSLAFG00000000267)	SLBP (ENSLAFG00000012933) #20	TMEM129 (ENSLAFG00000021484) #21	ENSLAFG00000005224 #22	FGFR3 (ENSLAFG00000012619) #23	LETM1 (ENSLAFG00000022179) #24	NSD2 (ENSLAFG00000008162) #25	NELFA (ENSLAFG00000008168) #26	C4orf48 (ENSLAFG00000029945) #27	NAT8L (ENSLAFG00000030733) #28	POLN (ENSLAFG00000014515) #29	HAUS3 (ENSLAFG00000020863) #31	MXD4 (ENSLAFG00000026709) #32	ENSLAFG00000001042 #33	RNF4 (ENSLAFG00000007382) #36	ENSLAFG00000004078 #37	ENSLAFG00000028553 #37	ENSLAFG00000027379	SH3BP2 (ENSLAFG00000016902)
Elephant	MODERN SPECIES	603	SPPL2A (ENSLAFG00000014974)	ENSLAFG00000032088	AP4E1 (ENSLAFG00000006452)	ENSLAFG00000030822	TNFAIP8L3 (ENSLAFG00000006663)	CYP19A1 (ENSLAFG00000009390)	GLDN (ENSLAFG00000016003)	DMXL2 (ENSLAFG00000016011)	SCG3 (ENSLAFG00000030777)	LYSMD2 (ENSLAFG00000031664)	TMOD2 (ENSLAFG00000012741)	TMOD3 (ENSLAFG00000009017)	LEO1 (ENSLAFG00000016350)	MAPK6 (ENSLAFG00000013900)	ENSLAFG00000028101	ENSLAFG00000032263 #22	GNB5 (ENSLAFG00000001471)	ENSLAFG00000029656	ENSLAFG00000015566	MYO5A (ENSLAFG00000000750)	ARPP19 (ENSLAFG00000000755)	ATOSA (ENSLAFG00000010429)	ENSLAFG00000027243	ENSLAFG00000028906	ENSLAFG00000012960	ENSLAFG00000028400
Hyrax	MODERN SPECIES	8198															TMEM129 (ENSPCAG00000009961) #21	TACC3 (ENSPCAG00000009776) #22
Tenrec	MODERN SPECIES	856																ENSETEG00000014071 #22
Xenarthra	ANCESTRAL SPECIES	1372														ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22
Armadillo	MODERN SPECIES	1305													ENSDNOG00000031826	SLBP (ENSDNOG00000047539) #20	TMEM129 (ENSDNOG00000039724) #21	TACC3 (ENSDNOG00000031490) #22
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00510000047107.B	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00510000047107.B	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000158459.d	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342.l.a #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Diprotodontia	ANCESTRAL SPECIES	10	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00510000047107.B	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000158459.d	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342.l.a #26	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Diprotodontia_a	ANCESTRAL SPECIES	12	ENSGT00940000159492	ENSGT00390000015494 #8	ENSGT01100000263544.c.a.a.b #7	ENSGT00510000047107.B	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000158459.d	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342.l.a #26	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Common wonbat	MODERN SPECIES	1054	ENSVURG00010020444	ATRN (ENSVURG00010020517)	DGKQ (ENSVURG00010021140)	IDUA (ENSVURG00010021152) #8	SLC26A1 (ENSVURG00010021160) #7	ENSVURG00010021170	FGFRL1 (ENSVURG00010021177) #9	ENSVURG00010021189 #13	CTBP1 (ENSVURG00010021201) #14	MAEA (ENSVURG00010021222) #15	ENSVURG00010021231	NKX1-1 (ENSVURG00010021242) #17	FAM53A (ENSVURG00010021247)	SLBP (ENSVURG00010021255) #20	TMEM129 (ENSVURG00010021261) #21	ENSVURG00010021263 #22	ENSVURG00010021279	FGFR3 (ENSVURG00010021287) #23	ENSVURG00010021331 ##24	NSD2 (ENSVURG00010021411) #25	ENSVURG00010021490	ENSVURG00010021495 #26	ENSVURG00010021502 #28	HAUS3 (ENSVURG00010021506) #31	MXD4 (ENSVURG00010021518) #32	ENSVURG00010021528 #33	ENSVURG00010021535 #35	RNF4 (ENSVURG00010021546) #36	FAM193A (ENSVURG00010021562) #37	TNIP2 (ENSVURG00010021586)	SH3BP2 (ENSVURG00010021621)
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000015651	ENSSHAG00000014960	SLC26A1 (ENSSHAG00000014844) #7	IDUA (ENSSHAG00000014613) #8	ENSSHAG00000014584	FGFRL1 (ENSSHAG00000013968) #9	ENSSHAG00000012564 #11	ENSSHAG00000012404 #12	SPON2 (ENSSHAG00000012328) #13	CTBP1 (ENSSHAG00000010717) #14	MAEA (ENSSHAG00000006152) #15	ENSSHAG00000003641	FAM53A (ENSSHAG00000014457)	SLBP (ENSSHAG00000025869) #20	TMEM129 (ENSSHAG00000013825) #21	ENSSHAG00000013631 #22	ENSSHAG00000027667	FGFR3 (ENSSHAG00000009751) #23	ENSSHAG00000008701 ##24	NSD2 (ENSSHAG00000006750) #25	NELFA (ENSSHAG00000006075) #26	ENSSHAG00000023580 #27	NAT8L (ENSSHAG00000003078) #28	ENSSHAG00000012083 #31	ENSSHAG00000028807 #32	ZFYVE28 (ENSSHAG00000010322) #33	ENSSHAG00000026056 #35	FAM193A (ENSSHAG00000004929) #37	TNIP2 (ENSSHAG00000003911)	SH3BP2 (ENSSHAG00000001849)	ENSSHAG00000021157
Opossum	MODERN SPECIES	4	ATRN (ENSMODG00000004575)	DGKQ (ENSMODG00000004482)	SLC26A1 (ENSMODG00000004455) #7	IDUA (ENSMODG00000038782) #8	ENSMODG00000042625	FGFRL1 (ENSMODG00000004433) #9	ENSMODG00000027834 #11	ENSMODG00000004399 #12	SPON2 (ENSMODG00000004394) #13	CTBP1 (ENSMODG00000004380) #14	MAEA (ENSMODG00000004354) #15	ENSMODG00000004336	FAM53A (ENSMODG00000004313)	SLBP (ENSMODG00000004304) #20	TMEM129 (ENSMODG00000004290) #21	ENSMODG00000004284 #22	FGFR3 (ENSMODG00000004268) #23	ENSMODG00000004184	ENSMODG00000004250 ##24	NSD2 (ENSMODG00000004162) #25	NELFA (ENSMODG00000004110) #26	ENSMODG00000024702 #27	NAT8L (ENSMODG00000004088) #28	POLN (ENSMODG00000004074) #29	MXD4 (ENSMODG00000004033) #32	ZFYVE28 (ENSMODG00000004017) #33	ENSMODG00000050224 #35	RNF4 (ENSMODG00000003938) #36	FAM193A (ENSMODG00000003925) #37	TNIP2 (ENSMODG00000003892)	SH3BP2 (ENSMODG00000003843)
Platypus	MODERN SPECIES	15																ENSOANG00000046409 #22	FGFR3 (ENSOANG00000003354) #23	LETM1 (ENSOANG00000005820) #24	NSD2 (ENSOANG00000014321) #25	NELFA (ENSOANG00000044855) #26	NAT8L (ENSOANG00000039001) #28	MXD4 (ENSOANG00000043646) #32	ENSOANG00000041013	ZFYVE28 (ENSOANG00000039812) #33	ENSOANG00000049568 #35	RNF4 (ENSOANG00000045071) #36	FAM193A (ENSOANG00000015175) #37	ENSOANG00000029063	SH3BP2 (ENSOANG00000011388)	ADD1 (ENSOANG00000001783)	ENSOANG00000001782
Sauria	ANCESTRAL SPECIES	6	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Archosauria	ANCESTRAL SPECIES	1	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Aves	ANCESTRAL SPECIES	3	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Neognathae	ANCESTRAL SPECIES	5	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Anatidae	ANCESTRAL SPECIES	2	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Pink-footed goose	MODERN SPECIES	7	POLR1A (ENSABRG00000009609)	ST3GAL5 (ENSABRG00000009151)	ATOH8 (ENSABRG00000009126)	FGFRL1 (ENSABRG00000009111) #9	RNF212 (ENSABRG00000009079) #11	ENSABRG00000009069 #12	SPON2 (ENSABRG00000009053) #13	CTBP1 (ENSABRG00000009016) #14	MAEA (ENSABRG00000008991) #15	ENSABRG00000008962	NKX1-1 (ENSABRG00000008955) #17	FAM53A (ENSABRG00000008927)	SLBP (ENSABRG00000008914) #20	ENSABRG00000008878 #20	TMEM129 (ENSABRG00000008871) #21	TACC3 (ENSABRG00000008855) #22	ENSABRG00000008817	FGFR3 (ENSABRG00000008800) #23	ENSABRG00000008782 ##24	NSD2 (ENSABRG00000008744) #25	NELFA (ENSABRG00000008734) #26	ENSABRG00000008727 #27	NAT8L (ENSABRG00000008714) #28	POLN (ENSABRG00000008656) #29	HAUS3 (ENSABRG00000008704) #31	MXD4 (ENSABRG00000008646) #32	ZFYVE28 (ENSABRG00000008507) #33	CFAP99 (ENSABRG00000008431) #35	RNF4 (ENSABRG00000008422) #36	FAM193A (ENSABRG00000007852) #37	TNIP2 (ENSABRG00000007791)
Duck	MODERN SPECIES	22	POLR1A (ENSAPLG00000013871)	ST3GAL5 (ENSAPLG00000014680)	ATOH8 (ENSAPLG00000022131)	FGFRL1 (ENSAPLG00000014983) #9	ENSAPLG00000019361	ENSAPLG00000019372	ENSAPLG00000015003 #12	SPON2 (ENSAPLG00000015017) #13	CTBP1 (ENSAPLG00000015635) #14	MAEA (ENSAPLG00000015852) #15	ENSAPLG00000015894	ENSAPLG00000021364	FAM53A (ENSAPLG00000015975)	SLBP (ENSAPLG00000015989) #20	TMEM129 (ENSAPLG00000016182) #21	TACC3 (ENSAPLG00000016198) #22	FGFR3 (ENSAPLG00000016333) #23	ENSAPLG00000003508 ##24	NSD2 (ENSAPLG00000003770) #25	NELFA (ENSAPLG00000004120) #26	ENSAPLG00000016870 #27	C4orf48 (ENSAPLG00000027604) #27	NAT8L (ENSAPLG00000004458) #28	POLN (ENSAPLG00000004531) #29	HAUS3 (ENSAPLG00000004991) #31	MXD4 (ENSAPLG00000004997) #32	ZFYVE28 (ENSAPLG00000004999) #33	CFAP99 (ENSAPLG00000005144) #35	RNF4 (ENSAPLG00000005244) #36	FAM193A (ENSAPLG00000005276) #37	TNIP2 (ENSAPLG00000005556)
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880.j #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880.j #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Chicken	MODERN SPECIES	33	POLR1A (ENSGALG00010017763)	ST3GAL5 (ENSGALG00010017751)	ATOH8 (ENSGALG00010017718)	FGFRL1 (ENSGALG00010017706) #9	RNF212 (ENSGALG00010017689) #11	TMED11 (ENSGALG00010017682) #12	SPON2 (ENSGALG00010017676) #13	CTBP1 (ENSGALG00010017665) #14	MAEA (ENSGALG00010017646) #15	UVSSA (ENSGALG00010016107)	NKX1-1 (ENSGALG00010016036) #17	FAM53A (ENSGALG00010016631)	SLBP (ENSGALG00010016616) #20	ENSGALG00010016603 #20	TMEM129 (ENSGALG00010016592) #21	TACC3 (ENSGALG00010016211) #22	FGFR3 (ENSGALG00010016940) #23	ENSGALG00010016933	LETM1 (ENSGALG00010016924) ##24	NSD2 (ENSGALG00010016910) #25	NELFA (ENSGALG00010016741) #26	ENSGALG00010016735 #27	C4orf48 (ENSGALG00010016731) #27	NAT8L (ENSGALG00010017631) #28	POLN (ENSGALG00010017619) #29	HAUS3 (ENSGALG00010017613) #31	MXD4 (ENSGALG00010017600) #32	ZFYVE28 (ENSGALG00010017586) #33	CFAP99 (ENSGALG00010017561) #35	RNF4 (ENSGALG00010017547) #36	FAM193A (ENSGALG00010017533) #37
Japanese quail	MODERN SPECIES	22	POLR1A (ENSCJPG00005004833)	ST3GAL5 (ENSCJPG00005004831)	ATOH8 (ENSCJPG00005004828)	FGFRL1 (ENSCJPG00005004823) #9	RNF212 (ENSCJPG00005004815) #11	ENSCJPG00005004814 #12	SPON2 (ENSCJPG00005004812) #13	CTBP1 (ENSCJPG00005004796) #14	MAEA (ENSCJPG00005004779) #15	ENSCJPG00005004776	NKX1-1 (ENSCJPG00005004773) #17	FAM53A (ENSCJPG00005004768)	SLBP (ENSCJPG00005004762) #20	ENSCJPG00005004758 #20	TMEM129 (ENSCJPG00005004755) #21	TACC3 (ENSCJPG00005004752) #22	ENSCJPG00005001291 #23	ENSCJPG00005001087 ##24	NSD2 (ENSCJPG00005000902) #25	NELFA (ENSCJPG00005000857) #26	ENSCJPG00005000849 #27	C4orf48 (ENSCJPG00005000845) #27	NAT8L (ENSCJPG00005000839) #28	POLN (ENSCJPG00005000822) #29	HAUS3 (ENSCJPG00005000834) #31	MXD4 (ENSCJPG00005000809) #32	ZFYVE28 (ENSCJPG00005000799) #33	CFAP99 (ENSCJPG00005000780) #35	RNF4 (ENSCJPG00005000772) #36	FAM193A (ENSCJPG00005000765) #37	TNIP2 (ENSCJPG00005000763)
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Great tit	MODERN SPECIES	23	IMMT (ENSPMJG00000016788)	PTCD3 (ENSPMJG00000016786)	POLR1A (ENSPMJG00000016785)	ST3GAL5 (ENSPMJG00000016784)	FGFRL1 (ENSPMJG00000016781) #9	RNF212 (ENSPMJG00000016778) #11	ENSPMJG00000016777 #12	SPON2 (ENSPMJG00000016776) #13	CTBP1 (ENSPMJG00000016774) #14	MAEA (ENSPMJG00000016773) #15	ENSPMJG00000016772	NKX1-1 (ENSPMJG00000016771) #17	FAM53A (ENSPMJG00000016765)	SLBP (ENSPMJG00000016763) #20	TMEM129 (ENSPMJG00000016762) #21	TACC3 (ENSPMJG00000016761) #22	ENSPMJG00000016756	FGFR3 (ENSPMJG00000016755) #23	ENSPMJG00000016753 ##24	NELFA (ENSPMJG00000016751) #26	NSD2 (ENSPMJG00000016750) #25	ENSPMJG00000016749 #27	NAT8L (ENSPMJG00000016748) #28	POLN (ENSPMJG00000016747) #29	HAUS3 (ENSPMJG00000016746) #31	MXD4 (ENSPMJG00000016745) #32	ZFYVE28 (ENSPMJG00000016738) #33	CFAP99 (ENSPMJG00000016737) #35	RNF4 (ENSPMJG00000016736) #36	FAM193A (ENSPMJG00000016722) #37	TNIP2 (ENSPMJG00000016720)
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT01080000257700	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Zebra finch	MODERN SPECIES	25	POLR1A (ENSTGUG00000010704)	ST3GAL5 (ENSTGUG00000010696)	ATOH8 (ENSTGUG00000010695)	FGFRL1 (ENSTGUG00000010690) #9	RNF212 (ENSTGUG00000010685) #11	ENSTGUG00000010674 #12	SPON2 (ENSTGUG00000010671) #13	CTBP1 (ENSTGUG00000010662) #14	MAEA (ENSTGUG00000010646) #15	ENSTGUG00000010640	NKX1-1 (ENSTGUG00000029299) #17	FAM53A (ENSTGUG00000010633)	SLBP (ENSTGUG00000010626) #20	ENSTGUG00000026053 #20	TMEM129 (ENSTGUG00000010623) #21	TACC3 (ENSTGUG00000010612) #22	FGFR3 (ENSTGUG00000010583) #23	ENSTGUG00000010578	ENSTGUG00000010569 ##24	NSD2 (ENSTGUG00000010558) #25	NELFA (ENSTGUG00000010548) #26	ENSTGUG00000022999 #27	C4orf48 (ENSTGUG00000010545) #27	NAT8L (ENSTGUG00000027909) #28	POLN (ENSTGUG00000010536) #29	MXD4 (ENSTGUG00000010530) #32	ZFYVE28 (ENSTGUG00000010524) #33	CFAP99 (ENSTGUG00000010519) #35	RNF4 (ENSTGUG00000027704) #36	FAM193A (ENSTGUG00000010507) #37	TNIP2 (ENSTGUG00000010505)
Common canary	MODERN SPECIES	2	PTCD3 (ENSSCAG00000014937)	POLR1A (ENSSCAG00000014945)	ST3GAL5 (ENSSCAG00000014951)	ENSSCAG00000014958	FGFRL1 (ENSSCAG00000014969) #9	ENSSCAG00000014981 #12	SPON2 (ENSSCAG00000014992) #13	CTBP1 (ENSSCAG00000015001) #14	MAEA (ENSSCAG00000015016) #15	ENSSCAG00000015024	NKX1-1 (ENSSCAG00000015033) #17	FAM53A (ENSSCAG00000015042)	SLBP (ENSSCAG00000015046) #20	ENSSCAG00000015050 #20	TMEM129 (ENSSCAG00000015058) #21	TACC3 (ENSSCAG00000015066) #22	FGFR3 (ENSSCAG00000015145) #23	ENSSCAG00000015296	ENSSCAG00000015304 ##24	NSD2 (ENSSCAG00000015307) #25	NELFA (ENSSCAG00000015311) #26	ENSSCAG00000015313 #27	C4orf48 (ENSSCAG00000015314) #27	NAT8L (ENSSCAG00000015317) #28	HAUS3 (ENSSCAG00000015319) #31	MXD4 (ENSSCAG00000015320) #32	ZFYVE28 (ENSSCAG00000015322) #33	CFAP99 (ENSSCAG00000015324) #35	RNF4 (ENSSCAG00000015329) #36	FAM193A (ENSSCAG00000015363) #37	TNIP2 (ENSSCAG00000015434)
Medium ground finch	MODERN SPECIES	161									CTBP1 (ENSGFOG00000007273) #14	MAEA (ENSGFOG00000007257) #15	ENSGFOG00000007249	FAM53A (ENSGFOG00000007246)	SLBP (ENSGFOG00000007240) #20	ENSGFOG00000007232 #20	TMEM129 (ENSGFOG00000007227) #21	TACC3 (ENSGFOG00000007220) #22	FGFR3 (ENSGFOG00000004862) #23	ENSGFOG00000004673 ##24
Flycatcher	MODERN SPECIES	22	PTCD3 (ENSFALG00000010089)	POLR1A (ENSFALG00000010082)	ST3GAL5 (ENSFALG00000010076)	FGFRL1 (ENSFALG00000010071) #9	RNF212 (ENSFALG00000026442) #11	ENSFALG00000010064 #12	SPON2 (ENSFALG00000010062) #13	CTBP1 (ENSFALG00000010053) #14	MAEA (ENSFALG00000010037) #15	ENSFALG00000010020	ENSFALG00000024515	FAM53A (ENSFALG00000010014)	SLBP (ENSFALG00000010003) #20	ENSFALG00000009994 #20	TMEM129 (ENSFALG00000009990) #21	TACC3 (ENSFALG00000009974) #22	FGFR3 (ENSFALG00000009957) #23	ENSFALG00000009940 ##24	NSD2 (ENSFALG00000009928) #25	NELFA (ENSFALG00000024492) #26	ENSFALG00000023813 #27	C4orf48 (ENSFALG00000009893) #27	NAT8L (ENSFALG00000009890) #28	POLN (ENSFALG00000009880) #29	HAUS3 (ENSFALG00000009872) #31	MXD4 (ENSFALG00000028128) #32	ZFYVE28 (ENSFALG00000009861) #33	CFAP99 (ENSFALG00000009853) #35	RNF4 (ENSFALG00000028670) #36	FAM193A (ENSFALG00000009833) #37	TNIP2 (ENSFALG00000009830)
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000008738.t #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318.l.a #36	ENSGT00390000010318.l.b #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Kakapo	MODERN SPECIES	24	POLR1A (ENSSHBG00005000992)	ST3GAL5 (ENSSHBG00005001046)	ATOH8 (ENSSHBG00005001047)	FGFRL1 (ENSSHBG00005013918) #9	ENSSHBG00005013933 #12	SPON2 (ENSSHBG00005013942) #13	CTBP1 (ENSSHBG00005013962) #14	MAEA (ENSSHBG00005014007) #15	ENSSHBG00005014033	ENSSHBG00005014047	NKX1-1 (ENSSHBG00005014065) #17	FAM53A (ENSSHBG00005014082)	SLBP (ENSSHBG00005014090) #20	ENSSHBG00005014102 #20	TMEM129 (ENSSHBG00005014117) #21	TACC3 (ENSSHBG00005014126) #22	FGFR3 (ENSSHBG00005014171) #23	ENSSHBG00005014181 ##24	NSD2 (ENSSHBG00005014199) #25	NELFA (ENSSHBG00005014227) #26	C4orf48 (ENSSHBG00005014241) #27	NAT8L (ENSSHBG00005014256) #28	HAUS3 (ENSSHBG00005014273) #31	MXD4 (ENSSHBG00005014280) #32	ENSSHBG00005014294 #33	ENSSHBG00005014299 #33	CFAP99 (ENSSHBG00005014309) #35	RNF4 (ENSSHBG00005014316) #36	ENSSHBG00005014326 #36	ENSSHBG00005014338 #36	ENSSHBG00005014358 #36
Golden eagle	MODERN SPECIES		PTCD3 (ENSACCG00020000085)	POLR1A (ENSACCG00020000087)	ST3GAL5 (ENSACCG00020000088)	ATOH8 (ENSACCG00020000089)	FGFRL1 (ENSACCG00020000090) #9	ENSACCG00020000091 #12	SPON2 (ENSACCG00020000092) #13	CTBP1 (ENSACCG00020000093) #14	MAEA (ENSACCG00020000094) #15	ENSACCG00020000095	NKX1-1 (ENSACCG00020000096) #17	FAM53A (ENSACCG00020000097)	SLBP (ENSACCG00020000098) #20	ENSACCG00020000099 #20	TMEM129 (ENSACCG00020000100) #21	TACC3 (ENSACCG00020000101) #22	FGFR3 (ENSACCG00020000102) #23	ENSACCG00020000103 ##24	NSD2 (ENSACCG00020000104) #25	NELFA (ENSACCG00020000106) #26	ENSACCG00020000107 #27	C4orf48 (ENSACCG00020000108) #27	ENSACCG00020000109 #28	ENSACCG00020000110 #28	HAUS3 (ENSACCG00020000111) #31	MXD4 (ENSACCG00020000112) #32	ZFYVE28 (ENSACCG00020000113) #33	CFAP99 (ENSACCG00020000114) #35	ENSACCG00020000115 #36	ENSACCG00020000116 #36	FAM193A (ENSACCG00020000117) #37
African ostrich	MODERN SPECIES	1016	IMMT (ENSSCUG00000015420)	PTCD3 (ENSSCUG00000015435)	POLR1A (ENSSCUG00000015443)	ST3GAL5 (ENSSCUG00000015448)	ENSSCUG00000015450	FGFRL1 (ENSSCUG00000015454) #9	ENSSCUG00000015455 #12	SPON2 (ENSSCUG00000015460) #13	CTBP1 (ENSSCUG00000015468) #14	MAEA (ENSSCUG00000015471) #15	ENSSCUG00000015472	FAM53A (ENSSCUG00000015478)	SLBP (ENSSCUG00000015479) #20	ENSSCUG00000015480 #20	TMEM129 (ENSSCUG00000015481) #21	TACC3 (ENSSCUG00000015483) #22	ENSSCUG00000015487	FGFR3 (ENSSCUG00000015489) #23	ENSSCUG00000015494 ##24	NSD2 (ENSSCUG00000015496) #25	NELFA (ENSSCUG00000015506) #26	ENSSCUG00000015507 #27	ENSSCUG00000015508	C4orf48 (ENSSCUG00000015511) #27	ENSSCUG00000015512	NAT8L (ENSSCUG00000015515) #28	POLN (ENSSCUG00000015522) #29	HAUS3 (ENSSCUG00000015531) #31	MXD4 (ENSSCUG00000015532) #32	ZFYVE28 (ENSSCUG00000015535) #33	CFAP99 (ENSSCUG00000015539) #35
Australian saltwater crocodile	MODERN SPECIES	65	MRPL35 (ENSCPRG00005000548)	IMMT (ENSCPRG00005000573)	PTCD3 (ENSCPRG00005000603)	POLR1A (ENSCPRG00005000706)	ST3GAL5 (ENSCPRG00005001127)	FGFRL1 (ENSCPRG00005001162) #9	ENSCPRG00005001189 #12	SPON2 (ENSCPRG00005001192) #13	CTBP1 (ENSCPRG00005001249) #14	MAEA (ENSCPRG00005001284) #15	ENSCPRG00005001306	FAM53A (ENSCPRG00005001335)	SLBP (ENSCPRG00005001341) #20	ENSCPRG00005001347 #20	TMEM129 (ENSCPRG00005001354) #21	TACC3 (ENSCPRG00005001402) #22	FGFR3 (ENSCPRG00005001439) #23	ENSCPRG00005001480 ##24	NSD2 (ENSCPRG00005001494) #25	NELFA (ENSCPRG00005001509) #26	C4orf48 (ENSCPRG00005001551) #27	NAT8L (ENSCPRG00005001582) #28	POLN (ENSCPRG00005001601) #29	HAUS3 (ENSCPRG00005001652) #31	MXD4 (ENSCPRG00005001655) #32	ZFYVE28 (ENSCPRG00005001725) #33	CFAP99 (ENSCPRG00005001738) #35	RNF4 (ENSCPRG00005001756) #36	FAM193A (ENSCPRG00005001785) #37	TNIP2 (ENSCPRG00005001931)	SH3BP2 (ENSCPRG00005001952)
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00390000002313	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880.h #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00390000002313	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880.h #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Emydidae	ANCESTRAL SPECIES	1	ENSGT00390000002313	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880.h #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Three-toed box turtle	MODERN SPECIES	26	IMMT (ENSTMTG00000002750)	PTCD3 (ENSTMTG00000002726)	POLR1A (ENSTMTG00000002551)	ST3GAL5 (ENSTMTG00000002504)	ATOH8 (ENSTMTG00000002498)	FGFRL1 (ENSTMTG00000002490) #9	ENSTMTG00000002481 #12	SPON2 (ENSTMTG00000002478) #13	CTBP1 (ENSTMTG00000002467) #14	MAEA (ENSTMTG00000002462) #15	ENSTMTG00000002454	NKX1-1 (ENSTMTG00000002450) #17	FAM53A (ENSTMTG00000002446)	SLBP (ENSTMTG00000002441) #20	TMEM129 (ENSTMTG00000002438) #21	TACC3 (ENSTMTG00000002422) #22	FGFR3 (ENSTMTG00000002395) #23	ENSTMTG00000002384 ##24	NSD2 (ENSTMTG00000002368) #25	NELFA (ENSTMTG00000002358) #26	ENSTMTG00000002350 #27	C4orf48 (ENSTMTG00000002341) #27	NAT8L (ENSTMTG00000002337) #28	POLN (ENSTMTG00000002310) #29	HAUS3 (ENSTMTG00000002295) #31	MXD4 (ENSTMTG00000002289) #32	ZFYVE28 (ENSTMTG00000002279) #33	CFAP99 (ENSTMTG00000002255) #35	FAM193A (ENSTMTG00000002228) #37	TNIP2 (ENSTMTG00000002209)	SH3BP2 (ENSTMTG00000002197)
painted turtle	MODERN SPECIES	725	IMMT (ENSCPBG00000001183)	PTCD3 (ENSCPBG00000001152)	POLR1A (ENSCPBG00000001115)	ST3GAL5 (ENSCPBG00000001089)	ATOH8 (ENSCPBG00000001027)	FGFRL1 (ENSCPBG00000001000) #9	ENSCPBG00000000981 #12	SPON2 (ENSCPBG00000000965) #13	CTBP1 (ENSCPBG00000000892) #14	MAEA (ENSCPBG00000000853) #15	ENSCPBG00000000824	ENSCPBG00000000801	FAM53A (ENSCPBG00000000763)	SLBP (ENSCPBG00000000746) #20	TMEM129 (ENSCPBG00000000738) #21	TACC3 (ENSCPBG00000000303) #22	FGFR3 (ENSCPBG00000025109) #23	ENSCPBG00000025105 ##24	ENSCPBG00000025103 #25	ENSCPBG00000025097 #25	NELFA (ENSCPBG00000025095) #26	ENSCPBG00000025091 #27	NAT8L (ENSCPBG00000025087) #28	POLN (ENSCPBG00000025017) #29	HAUS3 (ENSCPBG00000025003) #31	MXD4 (ENSCPBG00000025001) #32	ZFYVE28 (ENSCPBG00000024998) #33	ENSCPBG00000024996
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00940000172282	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880.h #23	ENSGT00950000183167.b ##24	ENSGT00940000157429.m #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00960000189789	ENSGT00950000182932.B #28	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Goode s thornscrub tortoise	MODERN SPECIES	19	PTCD3 (ENSGEVG00005001349)	POLR1A (ENSGEVG00005001447)	ST3GAL5 (ENSGEVG00005001482)	ATOH8 (ENSGEVG00005001500)	FGFRL1 (ENSGEVG00005001514) #9	ENSGEVG00005001538 #12	SPON2 (ENSGEVG00005001580) #13	ENSGEVG00005001606	CTBP1 (ENSGEVG00005001634) #14	MAEA (ENSGEVG00005001690) #15	ENSGEVG00005001722	ENSGEVG00005001741	FAM53A (ENSGEVG00005001753)	SLBP (ENSGEVG00005001772) #20	TMEM129 (ENSGEVG00005001790) #21	TACC3 (ENSGEVG00005001810) #22	ENSGEVG00005001847 #23	ENSGEVG00005001880 ##24	NSD2 (ENSGEVG00005001909) #25	NELFA (ENSGEVG00005001927) #26	C4orf48 (ENSGEVG00005001945) #27	ENSGEVG00005001957	NAT8L (ENSGEVG00005001962) #28	HAUS3 (ENSGEVG00005001972) #31	MXD4 (ENSGEVG00005001978) #32	ZFYVE28 (ENSGEVG00005002043) #33	CFAP99 (ENSGEVG00005002179) #35	RNF4 (ENSGEVG00005002218) #36	FAM193A (ENSGEVG00005002232) #37	TNIP2 (ENSGEVG00005002252)	SH3BP2 (ENSGEVG00005002263)
Chinese turtle	MODERN SPECIES	2005														FAM53A (ENSPSIG00000012158)	TMEM129 (ENSPSIG00000011706) #21	TACC3 (ENSPSIG00000011605) #22	ENSPSIG00000001733	FGFR3 (ENSPSIG00000009934) #23	ENSPSIG00000008785 ##24	NSD2 (ENSPSIG00000006591) #25	NELFA (ENSPSIG00000017673) #26	ENSPSIG00000017624 #27	C4orf48 (ENSPSIG00000017545) #27	NAT8L (ENSPSIG00000017371) #28	ENSPSIG00000001726	POLN (ENSPSIG00000016926) #29	HAUS3 (ENSPSIG00000016557) #31	MXD4 (ENSPSIG00000016320) #32	ENSPSIG00000015986	ENSPSIG00000001717	ZFYVE28 (ENSPSIG00000015824) #33
Lepidosauria	ANCESTRAL SPECIES	80	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00940000172282	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904.o #31	ENSGT00940000160120 #32	ENSGT00940000157217 #33	ENSGT00500000045231 #35
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000159552	ENSGT00390000016051	ENSGT00390000006051	ENSGT00940000158961	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000160120 #32	ENSGT00500000045231 #35	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000157727	ENSGT00890000139463.b.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000160066
Laterata	ANCESTRAL SPECIES		ENSGT00940000159552	ENSGT00390000016051	ENSGT00390000006051	ENSGT00940000158961	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738.s #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000160120 #32	ENSGT00500000045231 #35	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000157727	ENSGT00890000139463.b.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000160066
Common wall lizard	MODERN SPECIES	13	KCTD4 (ENSPMRG00000003666)	ENSPMRG00000003670	ENSPMRG00000003678	FGFRL1 (ENSPMRG00000003682) #9	SPON2 (ENSPMRG00000003689) #13	ENSPMRG00000003704 #14	ENSPMRG00000003758 #14	ENSPMRG00000003773 #15	ENSPMRG00000003785 #15	ENSPMRG00000003791	NKX1-1 (ENSPMRG00000003811) #17	ENSPMRG00000003812	FAM53A (ENSPMRG00000003814)	SLBP (ENSPMRG00000003818) #20	TMEM129 (ENSPMRG00000003821) #21	TACC3 (ENSPMRG00000003823) #22	FGFR3 (ENSPMRG00000003828) #23	ENSPMRG00000003835 ##24	NSD2 (ENSPMRG00000003856) #25	NELFA (ENSPMRG00000003931) #26	C4orf48 (ENSPMRG00000003949) #27	NAT8L (ENSPMRG00000003953) #28	MXD4 (ENSPMRG00000003956) #32	CFAP99 (ENSPMRG00000003968) #35	ENSPMRG00000003974	ZFAND4 (ENSPMRG00000003978)	ENSPMRG00000003987	ENSPMRG00000003993	ENSPMRG00000003999	ENSPMRG00000004005	ENSPMRG00000004021
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00390000003758	ENSGT00940000163575	ENSGT00390000016051	ENSGT00940000159552	ENSGT00390000006051	ENSGT00940000158961	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00390000008738.s #20	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000160120 #32	ENSGT00500000045231 #35	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00890000139463.b.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000160066	ENSGT00940000153692.B
Elapidae	ANCESTRAL SPECIES	13	ENSGT00390000003758	ENSGT00940000163575	ENSGT00390000016051	ENSGT00940000159552	ENSGT00390000006051	ENSGT00940000158961	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00940000159900 #13	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00390000008738.s #20	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000160120 #32	ENSGT00390000015682	ENSGT00950000182937.A.a	ENSGT00500000044923	ENSGT00940000158274	ENSGT01000000218120	ENSGT00390000014056	ENSGT00940000158057	ENSGT00940000159008
Elapidae_a	ANCESTRAL SPECIES	102										ENSGT00940000156736 #9	ENSGT00940000157061.a.j #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00390000008738.s #20	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000160120 #32	ENSGT00390000015682	ENSGT00950000182937.A.a	ENSGT00500000044923	ENSGT00940000158274	ENSGT01000000218120	ENSGT00390000014056	ENSGT00940000158057	ENSGT00940000159008
Blue-lipped sea krait	MODERN SPECIES	4814															SLBP (ENSLLTG00000004868) #20	ENSLLTG00000004881 #22	NBR1 (ENSLLTG00000004914)	ARL4D (ENSLLTG00000004979)
tuatara	MODERN SPECIES	464									CTBP1 (ENSSPUG00000016066) #14	MAEA (ENSSPUG00000016045) #15	ENSSPUG00000016031	ENSSPUG00000016020	FAM53A (ENSSPUG00000016012)	SLBP (ENSSPUG00000016007) #20	TMEM129 (ENSSPUG00000015996) #21	TACC3 (ENSSPUG00000015987) #22	FGFR3 (ENSSPUG00000015970) #23	ENSSPUG00000015956 ##24	ENSSPUG00000015928 #25	ENSSPUG00000015905 #25	NELFA (ENSSPUG00000015899) #26	C4orf48 (ENSSPUG00000015889) #27	NAT8L (ENSSPUG00000015883) #28	POLN (ENSSPUG00000015690) #29	HAUS3 (ENSSPUG00000015629) #31	MXD4 (ENSSPUG00000015621) #32	CFAP99 (ENSSPUG00000015612) #35	ENSSPUG00000015598 #33	ENSSPUG00000015592 #33	ENSSPUG00000015587	ENSSPUG00000015581 #33
Anura	ANCESTRAL SPECIES	2	ENSGT00390000007547	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #9	ENSGT00740000115581.f #11	ENSGT00940000160999 #12	ENSGT00940000159900 #13	ENSGT00940000157061.a #14	ENSGT00940000153203.B #15	ENSGT00940000164256	ENSGT00940000162861 #17	ENSGT00530000063371.A	ENSGT00390000008738 #20	ENSGT00390000013284 #21	ENSGT00940000158858 #22	ENSGT00940000159880 #23	ENSGT00950000183167.b ##24	ENSGT00940000157429 #25	ENSGT00390000005342 #26	ENSGT00390000013043 #27	ENSGT00950000182932.B #28	ENSGT00940000159015 #29	ENSGT00390000011904 #31	ENSGT00940000157217 #33	ENSGT00500000045231 #35	ENSGT00390000010318 #36	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Frog	MODERN SPECIES		atoh8 (ENSXETG00000041181)	ENSXETG00000039689	fgfrl1 (ENSXETG00000021042) #9	ENSXETG00000042708	RNF212 (ENSXETG00000041996) #11	gp25l (ENSXETG00000032430) #12	spon2 (ENSXETG00000021044) #13	ctbp1 (ENSXETG00000021047) #14	maea (ENSXETG00000010676) #15	ENSXETG00000043260	uvssa (ENSXETG00000010677)	nkx1-1 (ENSXETG00000003881) #17	fam53a (ENSXETG00000003878)	slbp (ENSXETG00000003876) #20	tmem129 (ENSXETG00000003875) #21	tacc3 (ENSXETG00000003874) #22	fgfr3 (ENSXETG00000002396) #23	letm1 (ENSXETG00000032769) ##24	nsd2 (ENSXETG00000026376) #25	nelfa (ENSXETG00000002392) #26	c4orf48 (ENSXETG00000046848) #27	XB5729271 [provisional] (ENSXETG00000026378)	C4orf48 (ENSXETG00000046317) #27	poln (ENSXETG00000002388) #29	ENSXETG00000047057	nat8l (ENSXETG00000002389) #28	ENSXETG00000044442 #31	mxd4 (ENSXETG00000047414) #32	ENSXETG00000047339	ENSXETG00000047512	zfyve28 (ENSXETG00000020484) #33
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000003753	ENSLLEG00000003749	RNF212 (ENSLLEG00000003740) #11	ENSLLEG00000003735 #12	SPON2 (ENSLLEG00000003729) #13	CTBP1 (ENSLLEG00000003680) #14	MAEA (ENSLLEG00000003566) #15	ENSLLEG00000003532	ENSLLEG00000003528	ENSLLEG00000003505	NKX1-1 (ENSLLEG00000003496) #17	ENSLLEG00000003490	FAM53A (ENSLLEG00000003474)	ENSLLEG00000003454 #20	TMEM129 (ENSLLEG00000003431) #21	TACC3 (ENSLLEG00000003394) #22	FGFR3 (ENSLLEG00000003130) #23	ENSLLEG00000003019 ##24	ENSLLEG00000002999	NSD2 (ENSLLEG00000002834) #25	NELFA (ENSLLEG00000002756) #26	ENSLLEG00000002737 #27	C4orf48 (ENSLLEG00000002725) #27	NAT8L (ENSLLEG00000002715) #28	POLN (ENSLLEG00000002648) #29	HAUS3 (ENSLLEG00000002622) #31	ENSLLEG00000002583	ENSLLEG00000002562	ZFYVE28 (ENSLLEG00000002472) #33	CFAP99 (ENSLLEG00000002429) #35	ENSLLEG00000002418
Coelacanth	MODERN SPECIES	554											ENSLACG00000016423	FAM53A (ENSLACG00000015498)	ENSLACG00000014811	SLBP (ENSLACG00000014623) #20	TMEM129 (ENSLACG00000014177) #21	ENSLACG00000013773 #22	tfg (ENSLACG00000012212)