Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000161064 #7	ENSGT00940000161992 #8	ENSGT00940000161027 #9	ENSGT00940000153370.a.a #10	ENSGT00390000013169 #11	ENSGT00940000160285 #12	ENSGT00930000151054 #13	ENSGT00530000063721.B #14	ENSGT00940000161002 #15	ENSGT00940000162651 #16	ENSGT00940000155070 #17	ENSGT00940000161776 #18	ENSGT00390000016784 #19	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #24	ENSGT00390000017147 #25	ENSGT00390000000417.a.a.b.a.a.b #26	ENSGT00390000001738 #27	ENSGT00530000064783 #28	ENSGT00390000009753 #29	ENSGT00390000010028 #30	ENSGT01030000234598.b.b #31	ENSGT00940000160988 #32	ENSGT00940000160125 #33	ENSGT00940000157941 #34	ENSGT00940000162373 #35	ENSGT00390000007971 #36	ENSGT00390000009379 #37
Sciuridae	ANCESTRAL SPECIES	22	ENSGT00940000161064 #7	ENSGT00940000161992 #8	ENSGT00940000161027 #9	ENSGT00940000153370.a.a #10	ENSGT00390000013169 #11	ENSGT00940000160285 #12	ENSGT00930000151054 #13	ENSGT00530000063721.B #14	ENSGT00940000161002 #15	ENSGT00940000162651 #16	ENSGT00940000155070 #17	ENSGT00940000161776 #18	ENSGT00390000016784 #19	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #24	ENSGT00390000017147 #25	ENSGT00390000000417.a.a.b.a.a.b #26	ENSGT00390000001738 #27	ENSGT00530000064783 #28	ENSGT00390000009753 #29	ENSGT00390000010028 #30	ENSGT01030000234598.b.b #31	ENSGT00940000160988 #32	ENSGT00940000160125 #33	ENSGT00940000157941 #34	ENSGT00940000162373 #35	ENSGT00390000007971 #36	ENSGT00390000009379 #37
Marmotini	ANCESTRAL SPECIES	6	ENSGT00940000161064 #7	ENSGT00940000161992 #8	ENSGT00940000161027 #9	ENSGT00940000153370.a.a #10	ENSGT00390000013169 #11	ENSGT00940000160285 #12	ENSGT00930000151054 #13	ENSGT00530000063721.B #14	ENSGT00940000161002 #15	ENSGT00940000162651 #16	ENSGT00940000155070 #17	ENSGT00940000161776 #18	ENSGT00390000016784 #19	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #24	ENSGT00390000017147 #25	ENSGT00390000000417.a.a.b.a.a.b #26	ENSGT00390000001738 #27	ENSGT00530000064783 #28	ENSGT00390000009753 #29	ENSGT00390000010028 #30	ENSGT01030000234598.b.b #31	ENSGT00940000160988 #32	ENSGT00940000160125 #33	ENSGT00940000157941 #34	ENSGT00940000162373 #35	ENSGT00390000007971 #36	ENSGT00390000009379 #37
Marmotini_b	ANCESTRAL SPECIES	19	ENSGT00940000161064 #7	ENSGT00940000161992 #8	ENSGT00940000161027 #9	ENSGT00940000153370.a.a #10	ENSGT00390000013169 #11	ENSGT00940000160285 #12	ENSGT00930000151054 #13	ENSGT00530000063721.B #14	ENSGT00940000161002 #15	ENSGT00940000162651 #16	ENSGT00940000155070 #17	ENSGT00940000161776 #18	ENSGT00390000016784 #19	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #24	ENSGT00390000017147 #25	ENSGT00390000000417.a.a.b.a.a.b #26	ENSGT00390000001738 #27	ENSGT00530000064783 #28	ENSGT00390000009753 #29	ENSGT00390000010028 #30	ENSGT01030000234598.b.b #31	ENSGT00940000160988 #32	ENSGT00940000160125 #33	ENSGT00940000157941 #34	ENSGT00940000162373 #35	ENSGT00390000007971 #36	ENSGT00390000009379 #37
Arctic ground squirrel	MODERN SPECIES	172	MAP3K11 (ENSUPAG00010009634) #7	KCNK7 (ENSUPAG00010009649) #8	EHBP1L1 (ENSUPAG00010009664) #9	FAM89B (ENSUPAG00010009704) #10	ZNRD2 (ENSUPAG00010009719) #11	LTBP3 (ENSUPAG00010009730) #12	SCYL1 (ENSUPAG00010009796) #13	FRMD8 (ENSUPAG00010009843) #14	SLC25A45 (ENSUPAG00010009854) #15	TIGD3 (ENSUPAG00010009889) #16	DPF2 (ENSUPAG00010009890) #17	CDC42EP2 (ENSUPAG00010009916) #18	POLA2 (ENSUPAG00010009926) #19	ENSUPAG00010009952 #20	CAPN1 (ENSUPAG00010009972) #21	SYVN1 (ENSUPAG00010009983) #22	MRPL49 (ENSUPAG00010010204) #23	FAU (ENSUPAG00010010209) #24	ZNHIT2 (ENSUPAG00010010217) #25	TM7SF2 (ENSUPAG00010010219) #26	VPS51 (ENSUPAG00010010277) #27	TMEM262 (ENSUPAG00010010293) #28	ZFPL1 (ENSUPAG00010010301) #29	CDCA5 (ENSUPAG00010010311) #30	NAALADL1 (ENSUPAG00010010319) #31	SAC3D1 (ENSUPAG00010010344) #32	SNX15 (ENSUPAG00010010356) #33	ARL2 (ENSUPAG00010010395) #34	BATF2 (ENSUPAG00010010446) #35	MAJIN (ENSUPAG00010010423) #36	GPHA2 (ENSUPAG00010010454) #37
Squirrel	MODERN SPECIES	199	SIPA1 (ENSSTOG00000021216)	PCNX3 (ENSSTOG00000014339)	MAP3K11 (ENSSTOG00000028982) #7	KCNK7 (ENSSTOG00000014297) #8	EHBP1L1 (ENSSTOG00000025958) #9	ZNRD2 (ENSSTOG00000014294) #11	LTBP3 (ENSSTOG00000024436) #12	SCYL1 (ENSSTOG00000027207) #13	FRMD8 (ENSSTOG00000003760) #14	SLC25A45 (ENSSTOG00000000609) #15	TIGD3 (ENSSTOG00000024637) #16	DPF2 (ENSSTOG00000003746) #17	POLA2 (ENSSTOG00000003707) #19	ENSSTOG00000006651 #20	CAPN1 (ENSSTOG00000006603) #21	SYVN1 (ENSSTOG00000003351) #22	MRPL49 (ENSSTOG00000003344) #23	FAU (ENSSTOG00000003336) #24	ZNHIT2 (ENSSTOG00000003331) #25	TM7SF2 (ENSSTOG00000003307) #26	VPS51 (ENSSTOG00000003294) #27	ZFPL1 (ENSSTOG00000003265) #29	TMEM262 (ENSSTOG00000003280) #28	CDCA5 (ENSSTOG00000028787) #30	NAALADL1 (ENSSTOG00000003242) #31	SAC3D1 (ENSSTOG00000025911) #32	SNX15 (ENSSTOG00000021395) #33	ARL2 (ENSSTOG00000025524) #34	BATF2 (ENSSTOG00000009892) #35	MAJIN (ENSSTOG00000009884) #36	GPHA2 (ENSSTOG00000028008) #37
Alpin marmot	MODERN SPECIES	3								FRMD8 (ENSMMMG00000010061) #14	SLC25A45 (ENSMMMG00000010041) #15	TIGD3 (ENSMMMG00000010038) #16	DPF2 (ENSMMMG00000010009) #17	CDC42EP2 (ENSMMMG00000009999) #18	POLA2 (ENSMMMG00000009963) #19	ENSMMMG00000009941 #20	CAPN1 (ENSMMMG00000009923) #21	SYVN1 (ENSMMMG00000009710) #22	MRPL49 (ENSMMMG00000009697) #23	FAU (ENSMMMG00000009683) #24	ZNHIT2 (ENSMMMG00000009678) #25	TM7SF2 (ENSMMMG00000009623) #26	VPS51 (ENSMMMG00000009613) #27	TMEM262 (ENSMMMG00000009605) #28	ZFPL1 (ENSMMMG00000009592) #29	CDCA5 (ENSMMMG00000009575) #30	NAALADL1 (ENSMMMG00000009557) #31	SAC3D1 (ENSMMMG00000009547) #32	SNX15 (ENSMMMG00000009519) #33	ARL2 (ENSMMMG00000009507) #34	BATF2 (ENSMMMG00000009502) #35	MAJIN (ENSMMMG00000009467) #36	GPHA2 (ENSMMMG00000009449) #37
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	2	KCNK7 (ENSSVLG00005010023) #8	EHBP1L1 (ENSSVLG00005010102) #9	ENSSVLG00005010208 #10	ZNRD2 (ENSSVLG00005010255) #11	LTBP3 (ENSSVLG00005010309) #12	SCYL1 (ENSSVLG00005010565) #13	ENSSVLG00005010752	FRMD8 (ENSSVLG00005010868) #14	SLC25A45 (ENSSVLG00005011240) #15	TIGD3 (ENSSVLG00005011576) #16	DPF2 (ENSSVLG00005011657) #17	CDC42EP2 (ENSSVLG00005011714) #18	POLA2 (ENSSVLG00005011744) #19	ENSSVLG00005011804 #20	CAPN1 (ENSSVLG00005011947) #21	ENSSVLG00005012005 #22	ENSSVLG00005011234 #23	ENSSVLG00005011380 ##24	ENSSVLG00005011563 #26	VPS51 (ENSSVLG00005011764) #27	ENSSVLG00005011924 #22	ENSSVLG00005012015 #23	ZNHIT2 (ENSSVLG00005012078) #25	ENSSVLG00005012121 #26	ENSSVLG00005012214 #27	ZFPL1 (ENSSVLG00005012273) #29	TMEM262 (ENSSVLG00005012329) #28	ENSSVLG00005012382 #30	ENSSVLG00005012483 #31	SAC3D1 (ENSSVLG00005012520) #32	SNX15 (ENSSVLG00005012593) #33
Eurasian red squirrel	MODERN SPECIES	2	SCYL1 (ENSSVLG00005010565) #13	ENSSVLG00005010752	FRMD8 (ENSSVLG00005010868) #14	SLC25A45 (ENSSVLG00005011240) #15	TIGD3 (ENSSVLG00005011576) #16	DPF2 (ENSSVLG00005011657) #17	CDC42EP2 (ENSSVLG00005011714) #18	POLA2 (ENSSVLG00005011744) #19	ENSSVLG00005011804 #20	CAPN1 (ENSSVLG00005011947) #21	ENSSVLG00005012005 #22	ENSSVLG00005011234 #23	ENSSVLG00005011380 ##24	ENSSVLG00005011563 #26	VPS51 (ENSSVLG00005011764) #27	ENSSVLG00005011924 #22	ENSSVLG00005012015 #23	ZNHIT2 (ENSSVLG00005012078) #25	ENSSVLG00005012121 #26	ENSSVLG00005012214 #27	ZFPL1 (ENSSVLG00005012273) #29	TMEM262 (ENSSVLG00005012329) #28	ENSSVLG00005012382 #30	ENSSVLG00005012483 #31	SAC3D1 (ENSSVLG00005012520) #32	SNX15 (ENSSVLG00005012593) #33	ARL2 (ENSSVLG00005012664) #34	BATF2 (ENSSVLG00005012736) #35	ENSSVLG00005012834 #36	GPHA2 (ENSSVLG00005012916) #37	PPP2R5B (ENSSVLG00005012982)
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000161064 #7	ENSGT00940000161992 #8	ENSGT00940000161027.d #9	ENSGT00940000153370.a.a #10	ENSGT00390000013169 #11	ENSGT00940000160285 #12	ENSGT00930000151054 #13	ENSGT00530000063721.B #14	ENSGT00940000161002 #15	ENSGT00940000162651 #16	ENSGT00940000155070 #17	ENSGT00940000161776 #18	ENSGT00390000016784 #19	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.z.t ##24	ENSGT00390000017147 #25	ENSGT00390000000417.a.a.b.a.a.b #26	ENSGT00390000001738 #27	ENSGT00530000064783 #28	ENSGT00390000009753 #29	ENSGT00390000010028 #30	ENSGT01030000234598.b.b #31	ENSGT00940000160988 #32	ENSGT00940000160125 #33	ENSGT00940000157941 #34	ENSGT00940000162373 #35	ENSGT00390000007971 #36	ENSGT00390000009379 #37
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000161064 #7	ENSGT00940000161992 #8	ENSGT00940000161027.d #9	ENSGT00940000153370.a.a #10	ENSGT00390000013169 #11	ENSGT00940000160285 #12	ENSGT00930000151054 #13	ENSGT00530000063721.B #14	ENSGT00940000161002 #15	ENSGT00940000162651 #16	ENSGT00940000155070 #17	ENSGT00940000161776 #18	ENSGT00390000016784 #19	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.z.t ##24	ENSGT00390000017147 #25	ENSGT00390000000417.a.a.b.a.a.b #26	ENSGT00390000001738 #27	ENSGT00530000064783 #28	ENSGT00390000009753 #29	ENSGT00390000010028 #30	ENSGT01030000234598.b.b #31	ENSGT00940000160988 #32	ENSGT00940000160125 #33	ENSGT00940000157941 #34	ENSGT00940000162373 #35	ENSGT00390000007971 #36	ENSGT00390000009379 #37
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000161064 #7	ENSGT00940000161992 #8	ENSGT00940000161027.d #9	ENSGT00940000153370.a.a #10	ENSGT00390000013169 #11	ENSGT00940000160285 #12	ENSGT00930000151054 #13	ENSGT00530000063721.B #14	ENSGT00940000161002 #15	ENSGT00940000162651 #16	ENSGT00940000155070 #17	ENSGT00940000161776 #18	ENSGT00390000016784 #19	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.z.t ##24	ENSGT00390000017147 #25	ENSGT00390000000417.a.a.b.a.a.b #26	ENSGT00390000001738 #27	ENSGT00390000009753 #29	ENSGT00530000064783 #28	ENSGT00390000010028 #30	ENSGT01030000234598.b.b #31	ENSGT00940000160988 #32	ENSGT00940000160125 #33	ENSGT00940000157941 #34	ENSGT00940000162373 #35	ENSGT00390000007971 #36	ENSGT00390000009379 #37
Long-tailed chinchilla	MODERN SPECIES	129	MAP3K11 (ENSCLAG00000015438) #7	KCNK7 (ENSCLAG00000015744) #8	ENSCLAG00000016303 #9	FAM89B (ENSCLAG00000016262) #10	ZNRD2 (ENSCLAG00000017141) #11	LTBP3 (ENSCLAG00000016658) #12	SCYL1 (ENSCLAG00000016702) #13	FRMD8 (ENSCLAG00000017172) #14	SLC25A45 (ENSCLAG00000016505) #15	TIGD3 (ENSCLAG00000016665) #16	DPF2 (ENSCLAG00000016884) #17	CDC42EP2 (ENSCLAG00000015800) #18	POLA2 (ENSCLAG00000016655) #19	ENSCLAG00000016625 #20	CAPN1 (ENSCLAG00000017152) #21	SYVN1 (ENSCLAG00000017187) #22	MRPL49 (ENSCLAG00000016311) #23	ENSCLAG00000017124 ##24	ZNHIT2 (ENSCLAG00000018113) #25	TM7SF2 (ENSCLAG00000016205) #26	VPS51 (ENSCLAG00000017150) #27	ZFPL1 (ENSCLAG00000016631) #29	TMEM262 (ENSCLAG00000016449) #28	CDCA5 (ENSCLAG00000016509) #30	NAALADL1 (ENSCLAG00000016853) #31	SAC3D1 (ENSCLAG00000016933) #32	SNX15 (ENSCLAG00000016773) #33	ARL2 (ENSCLAG00000017139) #34	BATF2 (ENSCLAG00000016605) #35	ENSCLAG00000016695 #36	GPHA2 (ENSCLAG00000016728) #37
Degu	MODERN SPECIES	59	ENSODEG00000017829 #12	SCYL1 (ENSODEG00000018032) #13	ENSODEG00000017860	FRMD8 (ENSODEG00000017874) #14	SLC25A45 (ENSODEG00000017936) #15	ENSODEG00000020477	TIGD3 (ENSODEG00000020531) #16	ENSODEG00000018050	DPF2 (ENSODEG00000017997) #17	CDC42EP2 (ENSODEG00000020527) #18	POLA2 (ENSODEG00000018080) #19	ENSODEG00000017883 #20	ENSODEG00000020520	CAPN1 (ENSODEG00000017973) #21	ENSODEG00000017989	SYVN1 (ENSODEG00000018215) #22	ENSODEG00000017907 #23	ENSODEG00000017924 ##24	ZNHIT2 (ENSODEG00000020556) #25	TM7SF2 (ENSODEG00000018073) #26	VPS51 (ENSODEG00000017932) #27	ENSODEG00000017897	ENSODEG00000017967	STYK1 (ENSODEG00000017919)	ENSODEG00000017954	YBX3 (ENSODEG00000017957)	ENSODEG00000017984	ENSODEG00000018062	ENSODEG00000017952	ENSODEG00000020528
Guinea pig	MODERN SPECIES	42	MAP3K11 (ENSCPOG00000034854) #7	Kcnk7 (ENSCPOG00000013676) #8	ENSCPOG00000013669 #9	FAM89B (ENSCPOG00000037500) #10	ZNRD2 (ENSCPOG00000037280) #11	LTBP3 (ENSCPOG00000033168) #12	SCYL1 (ENSCPOG00000013585) #13	FRMD8 (ENSCPOG00000010221) #14	SLC25A45 (ENSCPOG00000010217) #15	TIGD3 (ENSCPOG00000009317) #16	DPF2 (ENSCPOG00000021560) #17	CDC42EP2 (ENSCPOG00000035428) #18	POLA2 (ENSCPOG00000001851) #19	ENSCPOG00000007211 #20	CAPN1 (ENSCPOG00000003962) #21	SYVN1 (ENSCPOG00000022104) #22	MRPL49 (ENSCPOG00000032785) #23	FAU (ENSCPOG00000014711) #24	ZNHIT2 (ENSCPOG00000014709) #25	TM7SF2 (ENSCPOG00000014705) #26	VPS51 (ENSCPOG00000021654) #27	TMEM262 (ENSCPOG00000036467) #28	ZFPL1 (ENSCPOG00000038790) #29	CDCA5 (ENSCPOG00000006754) #30	NAALADL1 (ENSCPOG00000006928) #31	SAC3D1 (ENSCPOG00000027025) #32	SNX15 (ENSCPOG00000006920) #33	ARL2 (ENSCPOG00000025520) #34	BATF2 (ENSCPOG00000035250) #35	MAJIN (ENSCPOG00000010188) #36	GPHA2 (ENSCPOG00000019413) #37
Naked mole-rat female	MODERN SPECIES	14	MAP3K11 (ENSHGLG00000044782) #7	KCNK7 (ENSHGLG00000012740) #8	EHBP1L1 (ENSHGLG00000019070) #9	FAM89B (ENSHGLG00000013991) #10	SSSCA1 (ENSHGLG00000048216) #11	SCYL1 (ENSHGLG00000018730) #13	FRMD8 (ENSHGLG00000018755) #14	SLC25A45 (ENSHGLG00000007151) #15	TIGD3 (ENSHGLG00000008128) #16	DPF2 (ENSHGLG00000010867) #17	CDC42EP2 (ENSHGLG00000006786) #18	ENSHGLG00000008855 #19	CAPN1 (ENSHGLG00000019308) #21	ENSHGLG00000034865	ENSHGLG00000032957	SYVN1 (ENSHGLG00000011777) #22	MRPL49 (ENSHGLG00000012648) #23	FAU (ENSHGLG00000033344) ##24	ZNHIT2 (ENSHGLG00000020780) #25	TM7SF2 (ENSHGLG00000011381) #26	VPS51 (ENSHGLG00000011455) #27	TMEM262 (ENSHGLG00000009658) #28	ZFPL1 (ENSHGLG00000012850) #29	CDCA5 (ENSHGLG00000011367) #30	NAALADL1 (ENSHGLG00000012818) #31	SAC3D1 (ENSHGLG00000010681) #32	SNX15 (ENSHGLG00000012842) #33	ENSHGLG00000010538 #34	BATF2 (ENSHGLG00000011217) #35	MAJIN (ENSHGLG00000012767) #36	GPHA2 (ENSHGLG00000011089) #37