Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000154524.a	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00940000165817	ENSGT00390000007479.z ##25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT00950000186001	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36
Glires	ANCESTRAL SPECIES	1	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000154524.a	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00940000165817	ENSGT00390000007479.z.t ##25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT00950000186001	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00940000165817	ENSGT00390000007479.z.t ##25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT00950000186001	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00940000165817	ENSGT00390000007479.z.t ##25	ENSGT00390000007479.z.s.a ##25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT00950000186001	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT00950000186001	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT00950000186001	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT00950000186001	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971
Murinae	ANCESTRAL SPECIES		ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT00950000186001	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971
Mus	ANCESTRAL SPECIES		ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT01070000255287 #29	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT00950000186001	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a.g.b #25	ENSGT00390000007479.y.a.g.a #24	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT01070000255287 #29	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT00950000186001	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36
Ryukyu mouse	MODERN SPECIES	10	Fam89b (MGP_CAROLIEiJ_G0022568) #7	Znrd2 (MGP_CAROLIEiJ_G0022569) #8	Ltbp3 (MGP_CAROLIEiJ_G0022570) #9	Scyl1 (MGP_CAROLIEiJ_G0022571) #10	Frmd8 (MGP_CAROLIEiJ_G0022572) #11	Slc25a45 (MGP_CAROLIEiJ_G0022573) #12	Tigd3 (MGP_CAROLIEiJ_G0022574) #13	Dpf2 (MGP_CAROLIEiJ_G0022575) #14	Cdc42ep2 (MGP_CAROLIEiJ_G0022576) #15	Pola2 (MGP_CAROLIEiJ_G0022577) #16	MGP_CAROLIEiJ_G0022578 #17	MGP_CAROLIEiJ_G0022579 #18	MGP_CAROLIEiJ_G0022580 #19	Slc22a20 (MGP_CAROLIEiJ_G0022581) #20	Capn1 (MGP_CAROLIEiJ_G0022582) #21	Syvn1 (MGP_CAROLIEiJ_G0022583) #22	Mrpl49 (MGP_CAROLIEiJ_G0022584) #23	MGP_CAROLIEiJ_G0022585 #24	MGP_CAROLIEiJ_G0022586 #25	Znhit2 (MGP_CAROLIEiJ_G0022587) #26	Tm7sf2 (MGP_CAROLIEiJ_G0022588) #27	Vps51 (MGP_CAROLIEiJ_G0022589) #28	MGP_CAROLIEiJ_G0022590 #29	Tmem262 (MGP_CAROLIEiJ_G0022591) #30	Zfpl1 (MGP_CAROLIEiJ_G0022592) #31	Cdca5 (MGP_CAROLIEiJ_G0022593) #32	Naaladl1 (MGP_CAROLIEiJ_G0022594) #33	Sac3d1 (MGP_CAROLIEiJ_G0022595) #34	Snx15 (MGP_CAROLIEiJ_G0022596) #35	Arl2 (MGP_CAROLIEiJ_G0022597) #36	Batf2 (MGP_CAROLIEiJ_G0022598) #37
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a.h ##25	ENSGT00390000007479.y.a.g.b #25	ENSGT00390000007479.y.a.g.a #24	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT01070000255287 #29	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT00950000186001	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35
Mouse	MODERN SPECIES	10	Map3k11 (ENSMUSG00000004054)	Kcnk7 (ENSMUSG00000024936)	Ehbp1l1 (ENSMUSG00000024937)	Fam89b (ENSMUSG00000024939) #7	Znrd2 (ENSMUSG00000079478) #8	Ltbp3 (ENSMUSG00000024940) #9	Scyl1 (ENSMUSG00000024941) #10	Frmd8 (ENSMUSG00000024816) #11	Slc25a45 (ENSMUSG00000024818) #12	Tigd3 (ENSMUSG00000044390) #13	Dpf2 (ENSMUSG00000024826) #14	Cdc42ep2 (ENSMUSG00000045664) #15	Pola2 (ENSMUSG00000024833) #16	Slc22a20 (ENSMUSG00000037451) #20	Capn1 (ENSMUSG00000024942) #21	Syvn1 (ENSMUSG00000024807) #22	Mrpl49 (ENSMUSG00000007338) #23	Fau (ENSMUSG00000038274) ##25	Znhit2 (ENSMUSG00000075227) #26	Tm7sf2 (ENSMUSG00000024799) #27	Vps51 (ENSMUSG00000024797) #28	Gm28374 (ENSMUSG00000100621)	Tmem262 (ENSMUSG00000047733) #30	Zfpl1 (ENSMUSG00000024792) #31	Cdca5 (ENSMUSG00000024791) #32	Gm550 (ENSMUSG00000117666)	Naaladl1 (ENSMUSG00000054999) #33	Sac3d1 (ENSMUSG00000024790) #34	Snx15 (ENSMUSG00000024787) #35	Arl2 (ENSMUSG00000024944) #36	Batf2 (ENSMUSG00000039699) #37
Mus_C	ANCESTRAL SPECIES	25	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a.g.b #25	ENSGT00390000007479.y.a.g.a #24	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT01070000255287 #29	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37
Steppe mouse	MODERN SPECIES	3175	Fam89b (ENSMSIG00000000508) #7	ENSMSIG00000000454 #8	Ltbp3 (ENSMSIG00000000265) #9	Scyl1 (ENSMSIG00000000177) #10	ENSMSIG00000030318	Frmd8 (ENSMSIG00000030316) #11	Slc25a45 (ENSMSIG00000030315) #12	Tigd3 (ENSMSIG00000030313) #13	Dpf2 (ENSMSIG00000030307) #14	Cdc42ep2 (ENSMSIG00000030305) #15	Pola2 (ENSMSIG00000030297) #16	Slc22a20 (ENSMSIG00000030294) #20	Capn1 (ENSMSIG00000030291) #21	ENSMSIG00000030290	ENSMSIG00000030289	Syvn1 (ENSMSIG00000030275) #22	Mrpl49 (ENSMSIG00000030271) #23	Fau (ENSMSIG00000030270) ##25	Znhit2 (ENSMSIG00000030268) #26	Tm7sf2 (ENSMSIG00000030251) #27	Vps51 (ENSMSIG00000030243) #28	Tmem262 (ENSMSIG00000030241) #30	Zfpl1 (ENSMSIG00000030236) #31	ENSMSIG00000030228 #32	Naaladl1 (ENSMSIG00000030219) #33	Sac3d1 (ENSMSIG00000030215) #34	Snx15 (ENSMSIG00000030203) #35	Arl2 (ENSMSIG00000030197) #36	ENSMSIG00000030190	Batf2 (ENSMSIG00000030186) #37	Majin (ENSMSIG00000030177)
spretus	MODERN SPECIES	10	Map3k11 (MGP_SPRETEiJ_G0023479)	Kcnk7 (MGP_SPRETEiJ_G0023480)	Ehbp1l1 (MGP_SPRETEiJ_G0023481)	Fam89b (MGP_SPRETEiJ_G0023482) #7	Znrd2 (MGP_SPRETEiJ_G0023483) #8	Ltbp3 (MGP_SPRETEiJ_G0023484) #9	Scyl1 (MGP_SPRETEiJ_G0023485) #10	Frmd8 (MGP_SPRETEiJ_G0023486) #11	Slc25a45 (MGP_SPRETEiJ_G0023487) #12	Tigd3 (MGP_SPRETEiJ_G0023488) #13	Dpf2 (MGP_SPRETEiJ_G0023489) #14	Cdc42ep2 (MGP_SPRETEiJ_G0023490) #15	Pola2 (MGP_SPRETEiJ_G0023491) #16	Slc22a20 (MGP_SPRETEiJ_G0023492) #20	Capn1 (MGP_SPRETEiJ_G0023493) #21	Syvn1 (MGP_SPRETEiJ_G0023494) #22	Mrpl49 (MGP_SPRETEiJ_G0023495) #23	MGP_SPRETEiJ_G0023496 #24	MGP_SPRETEiJ_G0023497 #25	Znhit2 (MGP_SPRETEiJ_G0023498) #26	Tm7sf2 (MGP_SPRETEiJ_G0023499) #27	Vps51 (MGP_SPRETEiJ_G0023500) #28	MGP_SPRETEiJ_G0023501 #29	Tmem262 (MGP_SPRETEiJ_G0023502) #30	Zfpl1 (MGP_SPRETEiJ_G0023503) #31	Cdca5 (MGP_SPRETEiJ_G0023504) #32	Naaladl1 (MGP_SPRETEiJ_G0023505) #33	MGP_SPRETEiJ_G0023506 #34	Snx15 (MGP_SPRETEiJ_G0023507) #35	Arl2 (MGP_SPRETEiJ_G0023508) #36	Batf2 (MGP_SPRETEiJ_G0023509) #37
Shrew mouse	MODERN SPECIES		Map3k11 (MGP_PahariEiJ_G0014062)	Kcnk7 (MGP_PahariEiJ_G0014063)	Ehbp1l1 (MGP_PahariEiJ_G0014064)	Fam89b (MGP_PahariEiJ_G0014065) #7	Znrd2 (MGP_PahariEiJ_G0014066) #8	Ltbp3 (MGP_PahariEiJ_G0014067) #9	Scyl1 (MGP_PahariEiJ_G0014068) #10	Frmd8 (MGP_PahariEiJ_G0014069) #11	Slc25a45 (MGP_PahariEiJ_G0014070) #12	Tigd3 (MGP_PahariEiJ_G0014071) #13	Dpf2 (MGP_PahariEiJ_G0014072) #14	Cdc42ep2 (MGP_PahariEiJ_G0014073) #15	Pola2 (MGP_PahariEiJ_G0014074) #16	Slc22a20 (MGP_PahariEiJ_G0014075) #20	Capn1 (MGP_PahariEiJ_G0014076) #21	Syvn1 (MGP_PahariEiJ_G0014077) #22	Mrpl49 (MGP_PahariEiJ_G0014078) #23	MGP_PahariEiJ_G0014079 #25	MGP_PahariEiJ_G0014080 #25	Znhit2 (MGP_PahariEiJ_G0014081) #26	Tm7sf2 (MGP_PahariEiJ_G0014082) #27	Vps51 (MGP_PahariEiJ_G0014083) #28	MGP_PahariEiJ_G0014084 #29	Tmem262 (MGP_PahariEiJ_G0014085) #30	Zfpl1 (MGP_PahariEiJ_G0014086) #31	Cdca5 (MGP_PahariEiJ_G0014087) #32	Naaladl1 (MGP_PahariEiJ_G0014088) #33	Sac3d1 (MGP_PahariEiJ_G0014089) #34	Snx15 (MGP_PahariEiJ_G0014090) #35	Arl2 (MGP_PahariEiJ_G0014091) #36	Batf2 (MGP_PahariEiJ_G0014092) #37
Rat	MODERN SPECIES		Kcnk7 (ENSRNOG00000020784)	Ehbp1l1 (ENSRNOG00000056038)	Fam89b (ENSRNOG00000024239) #7	Znrd2 (ENSRNOG00000012736) #8	Ltbp3 (ENSRNOG00000020813) #9	Scyl1 (ENSRNOG00000023668) #10	Frmd8 (ENSRNOG00000020881) #11	Slc25a45 (ENSRNOG00000030616) #12	Tigd3 (ENSRNOG00000023318) #13	Dpf2 (ENSRNOG00000020892) #14	Cdc42ep2 (ENSRNOG00000020904) #15	Pola2 (ENSRNOG00000020906) #16	Slc22a20 (ENSRNOG00000022673) #20	Capn1 (ENSRNOG00000020935) #21	Mrpl49 (ENSRNOG00000020975) #23	Syvn1 (ENSRNOG00000020950) #22	LOC687780 (ENSRNOG00000020982) #25	Znhit2 (ENSRNOG00000021794) #26	Tm7sf2 (ENSRNOG00000020989) #27	Vps51 (ENSRNOG00000020996) #28	Tmem262 (ENSRNOG00000047431) #30	Zfpl1 (ENSRNOG00000050180) #31	Cdca5 (ENSRNOG00000046635) #32	Naaladl1 (ENSRNOG00000021000) #33	Sac3d1 (ENSRNOG00000021003) #34	Snx15 (ENSRNOG00000021007) #35	Arl2 (ENSRNOG00000021010) #36	Batf2 (ENSRNOG00000021018) #37	Majin (ENSRNOG00000054336)	Gpha2 (ENSRNOG00000021020)	Ppp2r5b (ENSRNOG00000021025)
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070.g.b #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971	ENSGT00390000009379
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B.g #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070.g.b #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971	ENSGT00390000009379
Golden Hamster	MODERN SPECIES	197																Syvn1 (ENSMAUG00000008845) #22	Mrpl49 (ENSMAUG00000008380) #23
Chinese hamster chok1gshd	MODERN SPECIES	401	Map3k11 (ENSCGRG00001016647)	Kcnk7 (ENSCGRG00001021394)	ENSCGRG00001012173	Fam89b (ENSCGRG00001020511) #7	Znrd2 (ENSCGRG00001016064) #8	Ltbp3 (ENSCGRG00001023193) #9	Scyl1 (ENSCGRG00001003404) #10	ENSCGRG00001017527 #11	Slc25a45 (ENSCGRG00001011502) #12	Tigd3 (ENSCGRG00001010362) #13	Dpf2 (ENSCGRG00001020101) #14	Cdc42ep2 (ENSCGRG00001005189) #15	Pola2 (ENSCGRG00001014528) #16	Slc22a20 (ENSCGRG00001021556) #20	Capn1 (ENSCGRG00001022263) #21	Syvn1 (ENSCGRG00001009803) #22	Mrpl49 (ENSCGRG00001024245) #23	ENSCGRG00001000099 #25	Znhit2 (ENSCGRG00001007867) #26	Tm7sf2 (ENSCGRG00001013460) #27	Vps51 (ENSCGRG00001009738) #28	Tmem262 (ENSCGRG00001014365) #30	Zfpl1 (ENSCGRG00001014054) #31	Cdca5 (ENSCGRG00001017199) #32	Naaladl1 (ENSCGRG00001023277) #33	Sac3d1 (ENSCGRG00001001044) #34	Snx15 (ENSCGRG00001006328) #35	Arl2 (ENSCGRG00001006206) #36	Batf2 (ENSCGRG00001017734) #37	Majin (ENSCGRG00001022292)	Ppp2r5b (ENSCGRG00001023829)
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070.g.b #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971	ENSGT00390000009379
Prairie vole	MODERN SPECIES	16	Map3k11 (ENSMOCG00000007193)	Kcnk7 (ENSMOCG00000016184)	ENSMOCG00000017488	Fam89b (ENSMOCG00000022130) #7	Znrd2 (ENSMOCG00000001510) #8	Ltbp3 (ENSMOCG00000022312) #9	Scyl1 (ENSMOCG00000012901) #10	Frmd8 (ENSMOCG00000016492) #11	Slc25a45 (ENSMOCG00000002439) #12	Tigd3 (ENSMOCG00000010179) #13	Dpf2 (ENSMOCG00000021188) #14	Cdc42ep2 (ENSMOCG00000021194) #15	Pola2 (ENSMOCG00000013295) #16	Slc22a20 (ENSMOCG00000003828) #20	Capn1 (ENSMOCG00000020180) #21	Syvn1 (ENSMOCG00000014259) #22	Mrpl49 (ENSMOCG00000015528) #23	Fau (ENSMOCG00000016537) #25	Znhit2 (ENSMOCG00000010138) #26	Tm7sf2 (ENSMOCG00000006388) #27	Vps51 (ENSMOCG00000005156) #28	Tmem262 (ENSMOCG00000007979) #30	ENSMOCG00000010034 #31	Cdca5 (ENSMOCG00000015483) #32	Naaladl1 (ENSMOCG00000008328) #33	Sac3d1 (ENSMOCG00000005046) #34	Snx15 (ENSMOCG00000013564) #35	Arl2 (ENSMOCG00000019685) #36	Batf2 (ENSMOCG00000018735) #37	Majin (ENSMOCG00000011923)	Gpha2 (ENSMOCG00000001732)
Northern American deer mouse	MODERN SPECIES		Map3k11 (ENSPEMG00000018188)	Kcnk7 (ENSPEMG00000005045)	Ehbp1l1 (ENSPEMG00000009256)	Fam89b (ENSPEMG00000024505) #7	Znrd2 (ENSPEMG00000019199) #8	Ltbp3 (ENSPEMG00000019206) #9	Scyl1 (ENSPEMG00000005537) #10	Frmd8 (ENSPEMG00000009382) #11	Slc25a45 (ENSPEMG00000013705) #12	Tigd3 (ENSPEMG00000008948) #13	Dpf2 (ENSPEMG00000010943) #14	Cdc42ep2 (ENSPEMG00000027118) #15	Pola2 (ENSPEMG00000007401) #16	Slc22a20 (ENSPEMG00000019137) #20	Capn1 (ENSPEMG00000011736) #21	Syvn1 (ENSPEMG00000004066) #22	ENSPEMG00000028669 #23	Fau (ENSPEMG00000018896) #25	Znhit2 (ENSPEMG00000007214) #26	Tm7sf2 (ENSPEMG00000012570) #27	Vps51 (ENSPEMG00000006246) #28	Tmem262 (ENSPEMG00000025405) #30	Zfpl1 (ENSPEMG00000013919) #31	ENSPEMG00000027464 #32	Naaladl1 (ENSPEMG00000018122) #33	ENSPEMG00000009504 #34	Snx15 (ENSPEMG00000018517) #35	Arl2 (ENSPEMG00000007265) #36	Batf2 (ENSPEMG00000027625) #37	Majin (ENSPEMG00000010851)	Gpha2 (ENSPEMG00000010635)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1790	Map3k11 (ENSNGAG00000005852)	Kcnk7 (ENSNGAG00000004993)	ENSNGAG00000002065	Fam89b (ENSNGAG00000000889) #7	Znrd2 (ENSNGAG00000000517) #8	Ltbp3 (ENSNGAG00000018303) #9	Scyl1 (ENSNGAG00000016863) #10	Frmd8 (ENSNGAG00000016218) #11	Slc25a45 (ENSNGAG00000015505) #12	Tigd3 (ENSNGAG00000015391) #13	Dpf2 (ENSNGAG00000014669) #14	Cdc42ep2 (ENSNGAG00000000526) #15	Pola2 (ENSNGAG00000017624) #16	Slc22a20 (ENSNGAG00000015845) #20	Capn1 (ENSNGAG00000012859) #21	Syvn1 (ENSNGAG00000010252) #22	Mrpl49 (ENSNGAG00000008255) #23	ENSNGAG00000002022 ##25	Znhit2 (ENSNGAG00000001771) #26	Tm7sf2 (ENSNGAG00000020187) #27	Vps51 (ENSNGAG00000018291) #28	Tmem262 (ENSNGAG00000017495) #30	ENSNGAG00000017149 #31	Cdca5 (ENSNGAG00000015752) #32
Lesser Egyptian jerboa	MODERN SPECIES	60	Map3k11 (ENSJJAG00000011801)	Kcnk7 (ENSJJAG00000001537)	ENSJJAG00000011387	Fam89b (ENSJJAG00000013486) #7	Znrd2 (ENSJJAG00000016826) #8	Ltbp3 (ENSJJAG00000021720) #9	ENSJJAG00000007333 #10	Frmd8 (ENSJJAG00000024269) #11	Slc25a45 (ENSJJAG00000017178) #12	Tigd3 (ENSJJAG00000011195) #13	Dpf2 (ENSJJAG00000018564) #14	ENSJJAG00000010895 #15	Pola2 (ENSJJAG00000013843) #16	Slc22a20 (ENSJJAG00000024074) #20	Capn1 (ENSJJAG00000010875) #21	Syvn1 (ENSJJAG00000011203) #22	Mrpl49 (ENSJJAG00000015905) #23	Fau (ENSJJAG00000015494) ##25	Znhit2 (ENSJJAG00000010835) #26	Tm7sf2 (ENSJJAG00000021790) #27	Vps51 (ENSJJAG00000009246) #28	ENSJJAG00000013480 #31	Cdca5 (ENSJJAG00000024017) #32	Naaladl1 (ENSJJAG00000022928) #33	Sac3d1 (ENSJJAG00000020813) #34	Snx15 (ENSJJAG00000014006) #35	Arl2 (ENSJJAG00000020533) #36	Batf2 (ENSJJAG00000014025) #37	Majin (ENSJJAG00000024211)	Gpha2 (ENSJJAG00000018211)	ENSJJAG00000013423
Kangaroo rat	MODERN SPECIES	373	Map3k11 (ENSDORG00000012547)	Kcnk7 (ENSDORG00000027318)	ENSDORG00000012530	Fam89b (ENSDORG00000023192) #7	Znrd2 (ENSDORG00000025369) #8	Ltbp3 (ENSDORG00000008215) #9	Scyl1 (ENSDORG00000008213) #10	Frmd8 (ENSDORG00000011606) #11	Slc25a45 (ENSDORG00000023675) #12	Tigd3 (ENSDORG00000029849) #13	Dpf2 (ENSDORG00000011600) #14	Cdc42ep2 (ENSDORG00000029525) #15	Pola2 (ENSDORG00000006905) #16	Slc22a20 (ENSDORG00000006900) #20	Capn1 (ENSDORG00000006896) #21	Syvn1 (ENSDORG00000003610) #22	Mrpl49 (ENSDORG00000003613) #23	ENSDORG00000028029	ENSDORG00000003616 ##25	Znhit2 (ENSDORG00000003618) #26	Tm7sf2 (ENSDORG00000003619) #27	Vps51 (ENSDORG00000003621) #28	Tmem262 (ENSDORG00000025472) #30	Zfpl1 (ENSDORG00000001006) #31	Cdca5 (ENSDORG00000023965) #32	Naaladl1 (ENSDORG00000004254) #33	Sac3d1 (ENSDORG00000004253) #34	Snx15 (ENSDORG00000004252) #35	Arl2 (ENSDORG00000004251) #36	Batf2 (ENSDORG00000004853) #37	Majin (ENSDORG00000011719)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971	ENSGT00390000009379
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027.d	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.z.t ##25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971	ENSGT00390000009379
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027.d	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.z.t ##25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971	ENSGT00390000009379
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027.d	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.z.t ##25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00390000009753 #31	ENSGT00530000064783 #30	ENSGT00390000010028 #32	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971	ENSGT00390000009379
Long-tailed chinchilla	MODERN SPECIES	129	MAP3K11 (ENSCLAG00000015438)	KCNK7 (ENSCLAG00000015744)	ENSCLAG00000016303	FAM89B (ENSCLAG00000016262) #7	ZNRD2 (ENSCLAG00000017141) #8	LTBP3 (ENSCLAG00000016658) #9	SCYL1 (ENSCLAG00000016702) #10	FRMD8 (ENSCLAG00000017172) #11	SLC25A45 (ENSCLAG00000016505) #12	TIGD3 (ENSCLAG00000016665) #13	DPF2 (ENSCLAG00000016884) #14	CDC42EP2 (ENSCLAG00000015800) #15	POLA2 (ENSCLAG00000016655) #16	ENSCLAG00000016625 #20	CAPN1 (ENSCLAG00000017152) #21	SYVN1 (ENSCLAG00000017187) #22	MRPL49 (ENSCLAG00000016311) #23	ENSCLAG00000017124 ##25	ZNHIT2 (ENSCLAG00000018113) #26	TM7SF2 (ENSCLAG00000016205) #27	VPS51 (ENSCLAG00000017150) #28	ZFPL1 (ENSCLAG00000016631) #31	TMEM262 (ENSCLAG00000016449) #30	CDCA5 (ENSCLAG00000016509) #32	NAALADL1 (ENSCLAG00000016853) #33	SAC3D1 (ENSCLAG00000016933) #34	SNX15 (ENSCLAG00000016773) #35	ARL2 (ENSCLAG00000017139) #36	BATF2 (ENSCLAG00000016605) #37	ENSCLAG00000016695	GPHA2 (ENSCLAG00000016728)
Degu	MODERN SPECIES	59	ENSODEG00000017829 #9	SCYL1 (ENSODEG00000018032) #10	ENSODEG00000017860	FRMD8 (ENSODEG00000017874) #11	SLC25A45 (ENSODEG00000017936) #12	ENSODEG00000020477	TIGD3 (ENSODEG00000020531) #13	ENSODEG00000018050	DPF2 (ENSODEG00000017997) #14	CDC42EP2 (ENSODEG00000020527) #15	POLA2 (ENSODEG00000018080) #16	ENSODEG00000017883 #20	ENSODEG00000020520	CAPN1 (ENSODEG00000017973) #21	ENSODEG00000017989	SYVN1 (ENSODEG00000018215) #22	ENSODEG00000017907 #23	ENSODEG00000017924 ##25	ZNHIT2 (ENSODEG00000020556) #26	TM7SF2 (ENSODEG00000018073) #27	VPS51 (ENSODEG00000017932) #28	ENSODEG00000017897	ENSODEG00000017967	STYK1 (ENSODEG00000017919)	ENSODEG00000017954	YBX3 (ENSODEG00000017957)	ENSODEG00000017984	ENSODEG00000018062	ENSODEG00000017952	ENSODEG00000020528
Guinea pig	MODERN SPECIES	42	MAP3K11 (ENSCPOG00000034854)	Kcnk7 (ENSCPOG00000013676)	ENSCPOG00000013669	FAM89B (ENSCPOG00000037500) #7	ZNRD2 (ENSCPOG00000037280) #8	LTBP3 (ENSCPOG00000033168) #9	SCYL1 (ENSCPOG00000013585) #10	FRMD8 (ENSCPOG00000010221) #11	SLC25A45 (ENSCPOG00000010217) #12	TIGD3 (ENSCPOG00000009317) #13	DPF2 (ENSCPOG00000021560) #14	CDC42EP2 (ENSCPOG00000035428) #15	POLA2 (ENSCPOG00000001851) #16	ENSCPOG00000007211 #20	CAPN1 (ENSCPOG00000003962) #21	SYVN1 (ENSCPOG00000022104) #22	MRPL49 (ENSCPOG00000032785) #23	FAU (ENSCPOG00000014711) #25	ZNHIT2 (ENSCPOG00000014709) #26	TM7SF2 (ENSCPOG00000014705) #27	VPS51 (ENSCPOG00000021654) #28	TMEM262 (ENSCPOG00000036467) #30	ZFPL1 (ENSCPOG00000038790) #31	CDCA5 (ENSCPOG00000006754) #32	NAALADL1 (ENSCPOG00000006928) #33	SAC3D1 (ENSCPOG00000027025) #34	SNX15 (ENSCPOG00000006920) #35	ARL2 (ENSCPOG00000025520) #36	BATF2 (ENSCPOG00000035250) #37	MAJIN (ENSCPOG00000010188)	GPHA2 (ENSCPOG00000019413)
Naked mole-rat female	MODERN SPECIES	14	MAP3K11 (ENSHGLG00000044782)	KCNK7 (ENSHGLG00000012740)	EHBP1L1 (ENSHGLG00000019070)	FAM89B (ENSHGLG00000013991) #7	SSSCA1 (ENSHGLG00000048216) #8	SCYL1 (ENSHGLG00000018730) #10	FRMD8 (ENSHGLG00000018755) #11	SLC25A45 (ENSHGLG00000007151) #12	TIGD3 (ENSHGLG00000008128) #13	DPF2 (ENSHGLG00000010867) #14	CDC42EP2 (ENSHGLG00000006786) #15	ENSHGLG00000008855 #16	CAPN1 (ENSHGLG00000019308) #21	ENSHGLG00000034865	ENSHGLG00000032957	SYVN1 (ENSHGLG00000011777) #22	MRPL49 (ENSHGLG00000012648) #23	FAU (ENSHGLG00000033344) ##25	ZNHIT2 (ENSHGLG00000020780) #26	TM7SF2 (ENSHGLG00000011381) #27	VPS51 (ENSHGLG00000011455) #28	TMEM262 (ENSHGLG00000009658) #30	ZFPL1 (ENSHGLG00000012850) #31	CDCA5 (ENSHGLG00000011367) #32	NAALADL1 (ENSHGLG00000012818) #33	SAC3D1 (ENSHGLG00000010681) #34	SNX15 (ENSHGLG00000012842) #35	ENSHGLG00000010538 #36	BATF2 (ENSHGLG00000011217) #37	MAJIN (ENSHGLG00000012767)	GPHA2 (ENSHGLG00000011089)
Sciuridae	ANCESTRAL SPECIES	22	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971	ENSGT00390000009379
Marmotini	ANCESTRAL SPECIES	6	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971	ENSGT00390000009379
Marmotini_b	ANCESTRAL SPECIES	19	ENSGT00940000161064	ENSGT00940000161992	ENSGT00940000161027	ENSGT00940000153370.a.a #7	ENSGT00390000013169 #8	ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000162651 #13	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.y.a #25	ENSGT00390000017147 #26	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971	ENSGT00390000009379
Arctic ground squirrel	MODERN SPECIES	172	MAP3K11 (ENSUPAG00010009634)	KCNK7 (ENSUPAG00010009649)	EHBP1L1 (ENSUPAG00010009664)	FAM89B (ENSUPAG00010009704) #7	ZNRD2 (ENSUPAG00010009719) #8	LTBP3 (ENSUPAG00010009730) #9	SCYL1 (ENSUPAG00010009796) #10	FRMD8 (ENSUPAG00010009843) #11	SLC25A45 (ENSUPAG00010009854) #12	TIGD3 (ENSUPAG00010009889) #13	DPF2 (ENSUPAG00010009890) #14	CDC42EP2 (ENSUPAG00010009916) #15	POLA2 (ENSUPAG00010009926) #16	ENSUPAG00010009952 #20	CAPN1 (ENSUPAG00010009972) #21	SYVN1 (ENSUPAG00010009983) #22	MRPL49 (ENSUPAG00010010204) #23	FAU (ENSUPAG00010010209) #25	ZNHIT2 (ENSUPAG00010010217) #26	TM7SF2 (ENSUPAG00010010219) #27	VPS51 (ENSUPAG00010010277) #28	TMEM262 (ENSUPAG00010010293) #30	ZFPL1 (ENSUPAG00010010301) #31	CDCA5 (ENSUPAG00010010311) #32	NAALADL1 (ENSUPAG00010010319) #33	SAC3D1 (ENSUPAG00010010344) #34	SNX15 (ENSUPAG00010010356) #35	ARL2 (ENSUPAG00010010395) #36	BATF2 (ENSUPAG00010010446) #37	MAJIN (ENSUPAG00010010423)	GPHA2 (ENSUPAG00010010454)
Squirrel	MODERN SPECIES	199	SIPA1 (ENSSTOG00000021216)	PCNX3 (ENSSTOG00000014339)	MAP3K11 (ENSSTOG00000028982)	KCNK7 (ENSSTOG00000014297)	EHBP1L1 (ENSSTOG00000025958)	ZNRD2 (ENSSTOG00000014294) #8	LTBP3 (ENSSTOG00000024436) #9	SCYL1 (ENSSTOG00000027207) #10	FRMD8 (ENSSTOG00000003760) #11	SLC25A45 (ENSSTOG00000000609) #12	TIGD3 (ENSSTOG00000024637) #13	DPF2 (ENSSTOG00000003746) #14	POLA2 (ENSSTOG00000003707) #16	ENSSTOG00000006651 #20	CAPN1 (ENSSTOG00000006603) #21	SYVN1 (ENSSTOG00000003351) #22	MRPL49 (ENSSTOG00000003344) #23	FAU (ENSSTOG00000003336) #25	ZNHIT2 (ENSSTOG00000003331) #26	TM7SF2 (ENSSTOG00000003307) #27	VPS51 (ENSSTOG00000003294) #28	ZFPL1 (ENSSTOG00000003265) #31	TMEM262 (ENSSTOG00000003280) #30	CDCA5 (ENSSTOG00000028787) #32	NAALADL1 (ENSSTOG00000003242) #33	SAC3D1 (ENSSTOG00000025911) #34	SNX15 (ENSSTOG00000021395) #35	ARL2 (ENSSTOG00000025524) #36	BATF2 (ENSSTOG00000009892) #37	MAJIN (ENSSTOG00000009884)	GPHA2 (ENSSTOG00000028008)
Alpin marmot	MODERN SPECIES	3								FRMD8 (ENSMMMG00000010061) #11	SLC25A45 (ENSMMMG00000010041) #12	TIGD3 (ENSMMMG00000010038) #13	DPF2 (ENSMMMG00000010009) #14	CDC42EP2 (ENSMMMG00000009999) #15	POLA2 (ENSMMMG00000009963) #16	ENSMMMG00000009941 #20	CAPN1 (ENSMMMG00000009923) #21	SYVN1 (ENSMMMG00000009710) #22	MRPL49 (ENSMMMG00000009697) #23	FAU (ENSMMMG00000009683) #25	ZNHIT2 (ENSMMMG00000009678) #26	TM7SF2 (ENSMMMG00000009623) #27	VPS51 (ENSMMMG00000009613) #28	TMEM262 (ENSMMMG00000009605) #30	ZFPL1 (ENSMMMG00000009592) #31	CDCA5 (ENSMMMG00000009575) #32	NAALADL1 (ENSMMMG00000009557) #33	SAC3D1 (ENSMMMG00000009547) #34	SNX15 (ENSMMMG00000009519) #35	ARL2 (ENSMMMG00000009507) #36	BATF2 (ENSMMMG00000009502) #37	MAJIN (ENSMMMG00000009467)	GPHA2 (ENSMMMG00000009449)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	2	KCNK7 (ENSSVLG00005010023)	EHBP1L1 (ENSSVLG00005010102)	ENSSVLG00005010208 #7	ZNRD2 (ENSSVLG00005010255) #8	LTBP3 (ENSSVLG00005010309) #9	SCYL1 (ENSSVLG00005010565) #10	ENSSVLG00005010752	FRMD8 (ENSSVLG00005010868) #11	SLC25A45 (ENSSVLG00005011240) #12	TIGD3 (ENSSVLG00005011576) #13	DPF2 (ENSSVLG00005011657) #14	CDC42EP2 (ENSSVLG00005011714) #15	POLA2 (ENSSVLG00005011744) #16	ENSSVLG00005011804 #20	CAPN1 (ENSSVLG00005011947) #21	ENSSVLG00005012005 #22	ENSSVLG00005011234 #23	ENSSVLG00005011380 ##25	ENSSVLG00005011563 #27	VPS51 (ENSSVLG00005011764) #28	ENSSVLG00005011924 #22	ENSSVLG00005012015 #23	ZNHIT2 (ENSSVLG00005012078) #26	ENSSVLG00005012121 #27	ENSSVLG00005012214 #28	ZFPL1 (ENSSVLG00005012273) #31	TMEM262 (ENSSVLG00005012329) #30	ENSSVLG00005012382 #32	ENSSVLG00005012483 #33	SAC3D1 (ENSSVLG00005012520) #34	SNX15 (ENSSVLG00005012593) #35
Eurasian red squirrel	MODERN SPECIES	2	SCYL1 (ENSSVLG00005010565) #10	ENSSVLG00005010752	FRMD8 (ENSSVLG00005010868) #11	SLC25A45 (ENSSVLG00005011240) #12	TIGD3 (ENSSVLG00005011576) #13	DPF2 (ENSSVLG00005011657) #14	CDC42EP2 (ENSSVLG00005011714) #15	POLA2 (ENSSVLG00005011744) #16	ENSSVLG00005011804 #20	CAPN1 (ENSSVLG00005011947) #21	ENSSVLG00005012005 #22	ENSSVLG00005011234 #23	ENSSVLG00005011380 ##25	ENSSVLG00005011563 #27	VPS51 (ENSSVLG00005011764) #28	ENSSVLG00005011924 #22	ENSSVLG00005012015 #23	ZNHIT2 (ENSSVLG00005012078) #26	ENSSVLG00005012121 #27	ENSSVLG00005012214 #28	ZFPL1 (ENSSVLG00005012273) #31	TMEM262 (ENSSVLG00005012329) #30	ENSSVLG00005012382 #32	ENSSVLG00005012483 #33	SAC3D1 (ENSSVLG00005012520) #34	SNX15 (ENSSVLG00005012593) #35	ARL2 (ENSSVLG00005012664) #36	BATF2 (ENSSVLG00005012736) #37	ENSSVLG00005012834	GPHA2 (ENSSVLG00005012916)	PPP2R5B (ENSSVLG00005012982)
Lagomorpha	ANCESTRAL SPECIES	123						ENSGT00940000160285 #9	ENSGT00930000151054 #10	ENSGT00530000063721.B #11	ENSGT00940000161002 #12	ENSGT00940000155070 #14	ENSGT00940000161776 #15	ENSGT00390000016784 #16	ENSGT00940000162438 #20	ENSGT00940000159147 #21	ENSGT00940000154524.a	ENSGT00940000157743 #22	ENSGT00390000017253 #23	ENSGT00390000007479.z.s.a ##25	ENSGT00390000000417.a.a.b.a.a.b #27	ENSGT00390000001738 #28	ENSGT00530000064783 #30	ENSGT00390000009753 #31	ENSGT00390000010028 #32	ENSGT00950000186001	ENSGT01030000234598.b.b #33	ENSGT00940000160988 #34	ENSGT00940000160125 #35	ENSGT00940000157941 #36	ENSGT00940000162373 #37	ENSGT00390000007971	ENSGT00390000009379
Pika	MODERN SPECIES	5315															ENSOPRG00000009913 #21	SYVN1 (ENSOPRG00000009890) #22	MRPL49 (ENSOPRG00000009881) #23	FAU (ENSOPRG00000009875) ##25	TM7SF2 (ENSOPRG00000009805) #27	VPS51 (ENSOPRG00000009776) #28	ENSOPRG00000009763	CDCA5 (ENSOPRG00000009739) #32
Rabbit	MODERN SPECIES	674									FRMD8 (ENSOCUG00000023395) #11	DPF2 (ENSOCUG00000004593) #14	CDC42EP2 (ENSOCUG00000004589) #15	POLA2 (ENSOCUG00000004580) #16	ENSOCUG00000003132 #20	CAPN1 (ENSOCUG00000003122) #21	ENSOCUG00000031827	SYVN1 (ENSOCUG00000022650) #22	ENSOCUG00000014882 #23	ENSOCUG00000014878 ##25	ENSOCUG00000023705 #27	VPS51 (ENSOCUG00000000816) #28	TMEM262 (ENSOCUG00000000813) #30	ZFPL1 (ENSOCUG00000000811) #31	CDCA5 (ENSOCUG00000038891) #32	ENSOCUG00000000809	ENSOCUG00000011930 #33	ENSOCUG00000007323 #35	ENSOCUG00000023477 #36	BATF2 (ENSOCUG00000014263) #37	MAJIN (ENSOCUG00000014253)	PPP2R5B (ENSOCUG00000021093)	ENSOCUG00000027553
Tree shrew	MODERN SPECIES	2307																SYVN1 (ENSTBEG00000008146) #22	MRPL49 (ENSTBEG00000007929) #23	FAU (ENSTBEG00000007492) #25	ZNHIT2 (ENSTBEG00000007235) #26	ENSTBEG00000005901 #27	VPS51 (ENSTBEG00000005181) #28	ZFPL1 (ENSTBEG00000004248) #31	CDCA5 (ENSTBEG00000003765) #32