Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000000713 #22
Gnathostomata	ANCESTRAL SPECIES	30														ENSGT00390000011219 #20	ENSGT00940000154534 #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a #24	ENSGT00940000154152 #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000160794	ENSGT00940000161023	ENSGT00940000159254	ENSGT00940000161194	ENSGT00940000160866	ENSGT00940000160855	ENSGT00940000160009	ENSGT00940000161307	ENSGT00940000161087
Euteleostomi	ANCESTRAL SPECIES	33	ENSGT00940000156314	ENSGT00390000012679	ENSGT00940000160776	ENSGT00950000184771	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000166447	ENSGT00940000157439 #14	ENSGT00940000172406	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152 #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Sarcopterygii	ANCESTRAL SPECIES	94	ENSGT00940000160776	ENSGT00390000012679	ENSGT01100000263518.A.a.b	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152 #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Tetrapoda	ANCESTRAL SPECIES	21	ENSGT00390000005949	ENSGT01100000263518.A.a.b	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152 #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Amniota	ANCESTRAL SPECIES	14	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Mammalia	ANCESTRAL SPECIES	12	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000172404	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Theria	ANCESTRAL SPECIES	9	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000172404	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Eutheria	ANCESTRAL SPECIES	4	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00950000185410	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00950000185410	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35
Primates	ANCESTRAL SPECIES	3	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00950000185410	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00860000135909
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603.b #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000165611 #37
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679.n	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603.b #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000165611 #37
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679.n	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603.b #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000165611 #37
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679.n	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603.b #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000165611 #37
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679.n	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603.b #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000165611 #37
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679.n	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603.b #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000165611 #37
Drill	MODERN SPECIES	1297								OSBPL7 (ENSMLEG00000040663) #14	MRPL10 (ENSMLEG00000042780) #15	LRRC46 (ENSMLEG00000031583) #16	SCRN2 (ENSMLEG00000041491) #17	SP6 (ENSMLEG00000027177) #18	SP2 (ENSMLEG00000032228) #19	PNPO (ENSMLEG00000040872) #20	PRR15L (ENSMLEG00000020212) #21	CDK5RAP3 (ENSMLEG00000033869) #22	COPZ2 (ENSMLEG00000039090) #23	NFE2L1 (ENSMLEG00000039330) #24	CBX1 (ENSMLEG00000038745) #25	SNX11 (ENSMLEG00000039008) #26	SKAP1 (ENSMLEG00000029308) #27	HOXB1 (ENSMLEG00000037557) #28	HOXB2 (ENSMLEG00000031955) #29	HOXB4 (ENSMLEG00000029897) #30	HOXB3 (ENSMLEG00000026268) #31	HOXB5 (ENSMLEG00000009970) #32	HOXB6 (ENSMLEG00000029580) #33	HOXB7 (ENSMLEG00000042331) #34	HOXB8 (ENSMLEG00000007179) #35	HOXB9 (ENSMLEG00000030602) #36	PRAC1 (ENSMLEG00000033309) #37
Sooty mangabey	MODERN SPECIES	564	SOCS7 (ENSCATG00000038123)	GPR179 (ENSCATG00000016000)	ENSCATG00000005112	NPEPPS (ENSCATG00000011160)	KPNB1 (ENSCATG00000037124)	TBKBP1 (ENSCATG00000040564)	TBX21 (ENSCATG00000010529)	OSBPL7 (ENSCATG00000033623) #14	MRPL10 (ENSCATG00000035686) #15	LRRC46 (ENSCATG00000031406) #16	SCRN2 (ENSCATG00000038846) #17	SP6 (ENSCATG00000020123) #18	ENSCATG00000003341 #19	PNPO (ENSCATG00000039934) #20	PRR15L (ENSCATG00000020186) #21	CDK5RAP3 (ENSCATG00000006699) #22	COPZ2 (ENSCATG00000042708) #23	NFE2L1 (ENSCATG00000040775) #24	ENSCATG00000034735 ##25	SNX11 (ENSCATG00000030351) #26	ENSCATG00000019817	SKAP1 (ENSCATG00000044458) #27	HOXB1 (ENSCATG00000035575) #28	HOXB2 (ENSCATG00000035238) #29	HOXB4 (ENSCATG00000040704) #30	HOXB3 (ENSCATG00000031126) #31	HOXB5 (ENSCATG00000027616) #32	HOXB6 (ENSCATG00000043342) #33	HOXB7 (ENSCATG00000042829) #34	HOXB8 (ENSCATG00000025318) #35	HOXB9 (ENSCATG00000002169) #36
Olive baboon	MODERN SPECIES	8	ARHGAP23 (ENSPANG00000022030)	SOCS7 (ENSPANG00000022062)	GPR179 (ENSPANG00000022074)	MRPL45 (ENSPANG00000022083)	NPEPPS (ENSPANG00000022080)	KPNB1 (ENSPANG00000022099)	TBKBP1 (ENSPANG00000022108)	TBX21 (ENSPANG00000022107)	OSBPL7 (ENSPANG00000022928) #14	MRPL10 (ENSPANG00000022926) #15	LRRC46 (ENSPANG00000022918) #16	SCRN2 (ENSPANG00000022920) #17	SP6 (ENSPANG00000017158) #18	SP2 (ENSPANG00000022922) #19	PNPO (ENSPANG00000022924) #20	CDK5RAP3 (ENSPANG00000022902) #22	COPZ2 (ENSPANG00000022903) #23	NFE2L1 (ENSPANG00000022904) #24	CBX1 (ENSPANG00000022906) #25	SNX11 (ENSPANG00000022898) #26	ENSPANG00000026200	SKAP1 (ENSPANG00000022897) #27	HOXB1 (ENSPANG00000022886) #28	HOXB2 (ENSPANG00000034765) #29	ENSPANG00000045928	HOXB4 (ENSPANG00000022888) #30	HOXB5 (ENSPANG00000022889) #32	HOXB6 (ENSPANG00000022891) #33	HOXB7 (ENSPANG00000041701) #34	HOXB8 (ENSPANG00000022895) #35	HOXB9 (ENSPANG00000022896) #36
Macaca	ANCESTRAL SPECIES	4	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679.n	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603.b #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000165611 #37
Pig-tailed macaque	MODERN SPECIES	494	SOCS7 (ENSMNEG00000032316)	GPR179 (ENSMNEG00000042928)	ENSMNEG00000044663	NPEPPS (ENSMNEG00000000757)	KPNB1 (ENSMNEG00000040927)	TBKBP1 (ENSMNEG00000039009)	TBX21 (ENSMNEG00000036627)	OSBPL7 (ENSMNEG00000042829) #14	MRPL10 (ENSMNEG00000030905) #15	LRRC46 (ENSMNEG00000037035) #16	SCRN2 (ENSMNEG00000031786) #17	SP6 (ENSMNEG00000023861) #18	SP2 (ENSMNEG00000029577) #19	PNPO (ENSMNEG00000037010) #20	PRR15L (ENSMNEG00000028174) #21	CDK5RAP3 (ENSMNEG00000029039) #22	COPZ2 (ENSMNEG00000038720) #23	NFE2L1 (ENSMNEG00000037921) #24	CBX1 (ENSMNEG00000039720) #25	SNX11 (ENSMNEG00000034920) #26	SKAP1 (ENSMNEG00000015541) #27	ENSMNEG00000033446	HOXB1 (ENSMNEG00000036848) #28	HOXB2 (ENSMNEG00000043416) #29	HOXB3 (ENSMNEG00000032425) #31	HOXB4 (ENSMNEG00000032435) #30	HOXB5 (ENSMNEG00000039003) #32	HOXB6 (ENSMNEG00000042554) #33	HOXB7 (ENSMNEG00000040001) #34	HOXB8 (ENSMNEG00000034944) #35	HOXB9 (ENSMNEG00000045476) #36
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00940000163244.d.b.a.b.b.b.b.b.b.b.b.a.b.a.a.b	ENSGT00940000160776	ENSGT00390000012679.n	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT01100000263493.a.b.b.a.a.b.b.a.a.a.a.a.a.a.d.a.b.b	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000165611 #37
Crab-eating macaque	MODERN SPECIES	7	ENSMFAG00000064016	GPR179 (ENSMFAG00000002774)	MRPL45 (ENSMFAG00000043718)	NPEPPS (ENSMFAG00000003608)	KPNB1 (ENSMFAG00000030197)	TBKBP1 (ENSMFAG00000001252)	TBX21 (ENSMFAG00000042504)	OSBPL7 (ENSMFAG00000001330) #14	LRRC46 (ENSMFAG00000031915) #16	ENSMFAG00000030335 #17	SP6 (ENSMFAG00000030247) #18	ENSMFAG00000052999	SP2 (ENSMFAG00000038712) #19	PNPO (ENSMFAG00000039285) #20	PRR15L (ENSMFAG00000030161) #21	CDK5RAP3 (ENSMFAG00000046364) #22	COPZ2 (ENSMFAG00000045896) #23	NFE2L1 (ENSMFAG00000035583) #24	CBX1 (ENSMFAG00000036790) #25	SNX11 (ENSMFAG00000001845) #26	ENSMFAG00000047205	ENSMFAG00000048147	SKAP1 (ENSMFAG00000038763) #27	HOXB1 (ENSMFAG00000052359) #28	HOXB2 (ENSMFAG00000034146) #29	ENSMFAG00000062776	HOXB4 (ENSMFAG00000041000) #30	HOXB5 (ENSMFAG00000042418) #32	HOXB6 (ENSMFAG00000002294) #33	HOXB7 (ENSMFAG00000039298) #34	HOXB8 (ENSMFAG00000033418) #35
Rhesus	MODERN SPECIES	7	ENSMMUG00000055904	GPR179 (ENSMMUG00000020528)	MRPL45 (ENSMMUG00000030213)	NPEPPS (ENSMMUG00000005869)	KPNB1 (ENSMMUG00000019760)	TBKBP1 (ENSMMUG00000019762)	TBX21 (ENSMMUG00000057231)	OSBPL7 (ENSMMUG00000019039) #14	LRRC46 (ENSMMUG00000061605) #16	MRPL10 (ENSMMUG00000021486) #17	SP6 (ENSMMUG00000061952) #18	ENSMMUG00000053935	SP2 (ENSMMUG00000004765) #19	PNPO (ENSMMUG00000003325) #20	PRR15L (ENSMMUG00000050551) #21	CDK5RAP3 (ENSMMUG00000004760) #22	COPZ2 (ENSMMUG00000021934) #23	NFE2L1 (ENSMMUG00000021935) #24	CBX1 (ENSMMUG00000019882) #25	SNX11 (ENSMMUG00000020658) #26	SKAP1 (ENSMMUG00000050742) #27	HOXB1 (ENSMMUG00000022212) #28	HOXB2 (ENSMMUG00000057001) #29	HOXB4 (ENSMMUG00000052130) #30	ENSMMUG00000045203	HOXB5 (ENSMMUG00000051420) #32	HOXB6 (ENSMMUG00000062283) #33	HOXB7 (ENSMMUG00000055324) #34	HOXB8 (ENSMMUG00000020868) #35	HOXB9 (ENSMMUG00000052505) #36	PRAC1 (ENSMMUG00000053394) #37
Vervet Monkey	MODERN SPECIES	7	SOCS7 (ENSCSAG00000002628)	GPR179 (ENSCSAG00000002621)	ENSCSAG00000002616	NPEPPS (ENSCSAG00000002610)	KPNB1 (ENSCSAG00000002605)	TBKBP1 (ENSCSAG00000002598)	TBX21 (ENSCSAG00000002587)	OSBPL7 (ENSCSAG00000002580) #14	MRPL10 (ENSCSAG00000002576) #15	LRRC46 (ENSCSAG00000002574) #16	SCRN2 (ENSCSAG00000002569) #17	SP6 (ENSCSAG00000019041) #18	SP2 (ENSCSAG00000002567) #19	PNPO (ENSCSAG00000002565) #20	PRR15L (ENSCSAG00000019042) #21	CDK5RAP3 (ENSCSAG00000002562) #22	COPZ2 (ENSCSAG00000002558) #23	NFE2L1 (ENSCSAG00000002550) #24	CBX1 (ENSCSAG00000002547) #25	SNX11 (ENSCSAG00000002545) #26	SKAP1 (ENSCSAG00000002542) #27	ENSCSAG00000019043	HOXB1 (ENSCSAG00000002538) #28	HOXB2 (ENSCSAG00000002536) #29	HOXB3 (ENSCSAG00000002533) #31	HOXB4 (ENSCSAG00000002530) #30	HOXB5 (ENSCSAG00000002529) #32	HOXB6 (ENSCSAG00000002526) #33	HOXB7 (ENSCSAG00000002524) #34	HOXB8 (ENSCSAG00000002523) #35	HOXB9 (ENSCSAG00000002521) #36
Rhinopithecus	ANCESTRAL SPECIES	19	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679.m	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603.b #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000165611 #37
Black snub-nosed monkey	MODERN SPECIES	1661									OCRL (ENSRBIG00000041702)	ENSRBIG00000040735	TXNDC2 (ENSRBIG00000040108)	ENSRBIG00000039530	SP2 (ENSRBIG00000032526) #19	PNPO (ENSRBIG00000042160) #20	PRR15L (ENSRBIG00000030176) #21	CDK5RAP3 (ENSRBIG00000039441) #22	COPZ2 (ENSRBIG00000038810) #23	NFE2L1 (ENSRBIG00000034817) #24	ENSRBIG00000027048 #25	SNX11 (ENSRBIG00000030129) #26	SKAP1 (ENSRBIG00000042563) #27	HOXB1 (ENSRBIG00000041849) #28	HOXB2 (ENSRBIG00000029105) #29	HOXB3 (ENSRBIG00000036705) #31	HOXB4 (ENSRBIG00000036141) #30	HOXB5 (ENSRBIG00000015821) #32	HOXB6 (ENSRBIG00000029050) #33	HOXB7 (ENSRBIG00000039896) #34	HOXB8 (ENSRBIG00000043329) #35	HOXB9 (ENSRBIG00000035654) #36	PRAC1 (ENSRBIG00000041996) #37
Golden snub-nosed monkey	MODERN SPECIES	585								OSBPL7 (ENSRROG00000017659) #14	MRPL10 (ENSRROG00000033938) #15	LRRC46 (ENSRROG00000039559) #16	SCRN2 (ENSRROG00000037252) #17	SP6 (ENSRROG00000008983) #18	SP2 (ENSRROG00000037481) #19	PNPO (ENSRROG00000044027) #20	PRR15L (ENSRROG00000009484) #21	CDK5RAP3 (ENSRROG00000044651) #22	COPZ2 (ENSRROG00000030969) #23	NFE2L1 (ENSRROG00000044774) #24	CBX1 (ENSRROG00000041227) #25	SNX11 (ENSRROG00000029464) #26	SKAP1 (ENSRROG00000031517) #27	HOXB1 (ENSRROG00000042747) #28	HOXB2 (ENSRROG00000044849) #29	HOXB3 (ENSRROG00000037630) #31	HOXB5 (ENSRROG00000030674) #32	HOXB6 (ENSRROG00000028093) #33	HOXB7 (ENSRROG00000035066) #34	HOXB8 (ENSRROG00000045349) #35	HOXB9 (ENSRROG00000044654) #36	PRAC1 (ENSRROG00000039006) #37	PRAC2 (ENSRROG00000033208)
Hominoidea	DUPLICATION
Hominoidea	ANCESTRAL SPECIES																	ENSGT00390000000713.g #22
Gibbon	MODERN SPECIES	3	ENSNLEG00000009704	FOXS1 (ENSNLEG00000009700)	MYLK2 (ENSNLEG00000009678)	TPX2 (ENSNLEG00000009636)	BCL2L1 (ENSNLEG00000009634)	COX4I2 (ENSNLEG00000009628)	ID1 (ENSNLEG00000009620)	HM13 (ENSNLEG00000009589)	REM1 (ENSNLEG00000009580)	DEFB124 (ENSNLEG00000009576)	DEFB123 (ENSNLEG00000009574)	ENSNLEG00000027516	DEFB121 (ENSNLEG00000009569)	ENSNLEG00000009568	DEFB118 (ENSNLEG00000009566)	ENSNLEG00000032575 #22	DEFB115 (ENSNLEG00000009563)	DEFB126 (ENSNLEG00000009561)	DEFB127 (ENSNLEG00000009555)	DEFB128 (ENSNLEG00000009554)	DEFB129 (ENSNLEG00000009553)	DEFB132 (ENSNLEG00000009551)	C20orf96 (ENSNLEG00000009535)	ZCCHC3 (ENSNLEG00000009533)	SOX12 (ENSNLEG00000009528)	NRSN2 (ENSNLEG00000030985)	TRIB3 (ENSNLEG00000009522)	RBCK1 (ENSNLEG00000009499)	TBC1D20 (ENSNLEG00000033685)	ENSNLEG00000009497	ENSNLEG00000009428
Hominoidea	DUPLICATION
Hominoidea	ANCESTRAL SPECIES																	ENSGT00390000000713.h.a #22
Hominidae	ANCESTRAL SPECIES	16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246.j.b.b	ENSGT00940000155246.i	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603.b #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713.h.a #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000165611 #37
Homo/Pan/Gorilla group	DUPLICATION
Homo/Pan/Gorilla group	DUPLICATION
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	16	ENSGT00940000162811	ENSGT00940000161489	ENSGT00390000009842	ENSGT01090000260003.a.b.b.a.a.b.b.a	ENSGT00910000146888	ENSGT00390000002407.c	ENSGT00940000161109	ENSGT00940000156478	ENSGT00940000160613	ENSGT00530000064308	ENSGT00940000162385	ENSGT00730000111628	ENSGT00390000000279	ENSGT00530000064565	ENSGT00390000001502	ENSGT00390000000713.h.a.a.a #22	ENSGT00400000023200	ENSGT00940000164820	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01050000248429	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154601.a.b.a.a.b
Homo/Pan group	ANCESTRAL SPECIES	17	ENSGT00940000162011	ENSGT00940000162811	ENSGT00940000161489	ENSGT00390000009842	ENSGT01090000260003.a.b.b.a.a.b.b.a	ENSGT00390000002407.c	ENSGT00940000161109	ENSGT00940000156478	ENSGT00940000160613	ENSGT00530000064308	ENSGT00940000162385	ENSGT00730000111628	ENSGT00390000000279	ENSGT00530000064565	ENSGT00390000001502	ENSGT00390000000713.h.a.a.a #22	ENSGT00400000023200	ENSGT00940000164820	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01050000248429	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154601.a.b.a.a.b
Pan	ANCESTRAL SPECIES	15	ENSGT00940000162011	ENSGT00940000162811	ENSGT00940000161489	ENSGT00390000009842	ENSGT01090000260003.a.b.b.a.a.b.b.a	ENSGT00390000002407.c	ENSGT00940000161109	ENSGT00940000156478	ENSGT00940000160613	ENSGT00530000064308	ENSGT00940000162385	ENSGT00730000111628	ENSGT00390000000279	ENSGT00530000064565	ENSGT00390000001502	ENSGT00390000000713.h.a.a.a #22	ENSGT00400000023200	ENSGT00940000164820	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01050000248429	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000164560
Chimpanzee	MODERN SPECIES	11	FOXS1 (ENSPTRG00000013363)	MYLK2 (ENSPTRG00000013361)	TPX2 (ENSPTRG00000013360)	BCL2L1 (ENSPTRG00000013359)	COX4I2 (ENSPTRG00000013358)	ID1 (ENSPTRG00000013357)	ENSPTRG00000047072	ENSPTRG00000013356	REM1 (ENSPTRG00000013354)	DEFB124 (ENSPTRG00000013353)	DEFB123 (ENSPTRG00000013352)	DEFB121 (ENSPTRG00000030595)	DEFB119 (ENSPTRG00000013351)	DEFB118 (ENSPTRG00000045857)	DEFB116 (ENSPTRG00000032541)	ENSPTRG00000047609 #22	DEFB115 (ENSPTRG00000033694)	ENSPTRG00000047765	ENSPTRG00000052363	ENSPTRG00000013348	ENSPTRG00000046147	ENSPTRG00000050144	ENSPTRG00000051131	ENSPTRG00000046440	ENSPTRG00000051273	ENSPTRG00000044519	ENSPTRG00000043041	ENSPTRG00000043123	ENSPTRG00000046023	ENSPTRG00000048366	ZNF337 (ENSPTRG00000013344)
Bonobo	MODERN SPECIES	11	DUSP15 (ENSPPAG00000026366)	FOXS1 (ENSPPAG00000033162)	MYLK2 (ENSPPAG00000040852)	TPX2 (ENSPPAG00000030616)	BCL2L1 (ENSPPAG00000000042)	COX4I2 (ENSPPAG00000040770)	ID1 (ENSPPAG00000037030)	HM13 (ENSPPAG00000031171)	REM1 (ENSPPAG00000030426)	DEFB124 (ENSPPAG00000030283)	DEFB123 (ENSPPAG00000030174)	DEFB121 (ENSPPAG00000029675)	ENSPPAG00000029500	DEFB118 (ENSPPAG00000029202)	DEFB116 (ENSPPAG00000029087)	ENSPPAG00000027868 #22	DEFB115 (ENSPPAG00000027269)	ZNF337 (ENSPPAG00000025161)	NANP (ENSPPAG00000022695)	NINL (ENSPPAG00000031856)	GINS1 (ENSPPAG00000039045)	ABHD12 (ENSPPAG00000038923)	PYGB (ENSPPAG00000034450)	ENSPPAG00000042700	ENTPD6 (ENSPPAG00000031043)	VSX1 (ENSPPAG00000040169)	ACSS1 (ENSPPAG00000027610)	APMAP (ENSPPAG00000037399)	CST7 (ENSPPAG00000030321)	SYNDIG1 (ENSPPAG00000030602)	CST5 (ENSPPAG00000030471)
Gorilla	MODERN SPECIES	11	ENSGGOG00000011846	FOXS1 (ENSGGOG00000023442)	MYLK2 (ENSGGOG00000011831)	TPX2 (ENSGGOG00000011815)	ENSGGOG00000042926	BCL2L1 (ENSGGOG00000026245)	COX4I2 (ENSGGOG00000009052)	ID1 (ENSGGOG00000016121)	HM13 (ENSGGOG00000000991)	REM1 (ENSGGOG00000000990)	DEFB123 (ENSGGOG00000000884)	DEFB121 (ENSGGOG00000002943)	DEFB119 (ENSGGOG00000005372)	DEFB118 (ENSGGOG00000042168)	DEFB116 (ENSGGOG00000006237)	ENSGGOG00000041871 #22	DEFB115 (ENSGGOG00000024671)	ENSGGOG00000016857	ZNF337 (ENSGGOG00000014016)	NANP (ENSGGOG00000012837)	NINL (ENSGGOG00000002477)	GINS1 (ENSGGOG00000002473)	ABHD12 (ENSGGOG00000014299)	PYGB (ENSGGOG00000014285)	ENTPD6 (ENSGGOG00000014904)	VSX1 (ENSGGOG00000001283)	ACSS1 (ENSGGOG00000001280)	APMAP (ENSGGOG00000001278)	CST7 (ENSGGOG00000001275)	SYNDIG1 (ENSGGOG00000000617)	GGTLC1 (ENSGGOG00000027711)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT01030000234570.d.b.a.b.a	ENSGT01090000259987.b.b.a.a.b	ENSGT00390000004027	ENSGT00940000155246.j.b.a	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603.b #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713.h.a.a.b #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000165611 #37
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT01030000234570.d.b.a.b.a	ENSGT01090000259987.b.b.a.a.b	ENSGT00390000004027	ENSGT00940000155246.j.b.a	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603.b #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713.h.a.a.b #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000165611 #37
Pan	ANCESTRAL SPECIES	3	ENSGT01090000259987.b.b.a.a.b	ENSGT00390000004027	ENSGT00940000153464.A.b.b	ENSGT00940000155246.j.b.a	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603.b #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713.h.a.a.b #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000165611 #37
Bonobo	MODERN SPECIES	8	ENSPPAG00000019537	ENSPPAG00000041328	ENSPPAG00000031240	ENSPPAG00000041383	KPNB1 (ENSPPAG00000028842)	ENSPPAG00000040088	TBX21 (ENSPPAG00000033988)	OSBPL7 (ENSPPAG00000027887) #14	MRPL10 (ENSPPAG00000034452) #15	LRRC46 (ENSPPAG00000038983) #16	SCRN2 (ENSPPAG00000028214) #17	SP6 (ENSPPAG00000026169) #18	SP2 (ENSPPAG00000027065) #19	PNPO (ENSPPAG00000038148) #20	PRR15L (ENSPPAG00000003316) #21	ENSPPAG00000029145 #22	COPZ2 (ENSPPAG00000043351) #23	NFE2L1 (ENSPPAG00000031737) #24	ENSPPAG00000030413 #25	SNX11 (ENSPPAG00000033185) #26	SKAP1 (ENSPPAG00000039277) #27	HOXB1 (ENSPPAG00000039129) #28	HOXB2 (ENSPPAG00000027417) #29	HOXB3 (ENSPPAG00000032630) #31	HOXB4 (ENSPPAG00000040659) #30	HOXB5 (ENSPPAG00000039181) #32	HOXB6 (ENSPPAG00000032229) #33	HOXB7 (ENSPPAG00000010963) #34	HOXB8 (ENSPPAG00000034804) #35	HOXB9 (ENSPPAG00000028486) #36	PRAC1 (ENSPPAG00000014004) #37
Chimpanzee	MODERN SPECIES	8	EFCAB13 (ENSPTRG00000009329)	ENSPTRG00000045761	ENSPTRG00000048037	NPEPPS (ENSPTRG00000009330)	KPNB1 (ENSPTRG00000009333)	TBKBP1 (ENSPTRG00000009334)	TBX21 (ENSPTRG00000009335)	OSBPL7 (ENSPTRG00000009336) #14	MRPL10 (ENSPTRG00000009337) #15	LRRC46 (ENSPTRG00000009338) #16	SCRN2 (ENSPTRG00000009339) #17	SP6 (ENSPTRG00000009340) #18	SP2 (ENSPTRG00000009342) #19	PNPO (ENSPTRG00000009343) #20	PRR15L (ENSPTRG00000047216) #21	CDK5RAP3 (ENSPTRG00000009345) #22	COPZ2 (ENSPTRG00000009346) #23	NFE2L1 (ENSPTRG00000022631) #24	CBX1 (ENSPTRG00000052115) #25	SNX11 (ENSPTRG00000009349) #26	SKAP1 (ENSPTRG00000009350) #27	HOXB1 (ENSPTRG00000009351) #28	HOXB2 (ENSPTRG00000009352) #29	HOXB3 (ENSPTRG00000052423) #31	HOXB4 (ENSPTRG00000009354) #30	HOXB5 (ENSPTRG00000009355) #32	HOXB6 (ENSPTRG00000009356) #33	HOXB7 (ENSPTRG00000009357) #34	HOXB8 (ENSPTRG00000048497) #35	HOXB9 (ENSPTRG00000009358) #36	PRAC1 (ENSPTRG00000009359) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00390000000713.h.a.b #22
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT00390000000713.h.a.b #22
Human	MODERN SPECIES	8	MYL4 (ENSG00000198336)	ITGB3 (ENSG00000259207)	EFCAB13 (ENSG00000178852)	NPEPPS (ENSG00000141279)	KPNB1 (ENSG00000108424)	TBKBP1 (ENSG00000198933)	TBX21 (ENSG00000073861)	OSBPL7 (ENSG00000006025) #14	MRPL10 (ENSG00000159111) #15	LRRC46 (ENSG00000141294) #16	SCRN2 (ENSG00000141295) #17	SP6 (ENSG00000189120) #18	SP2 (ENSG00000167182) #19	PNPO (ENSG00000108439) #20	PRR15L (ENSG00000167183) #21	CDK5RAP3 (ENSG00000108465) #22	COPZ2 (ENSG00000005243) #23	NFE2L1 (ENSG00000082641) #24	CBX1 (ENSG00000108468) #25	SNX11 (ENSG00000002919) #26	SKAP1 (ENSG00000141293) #27	HOXB1 (ENSG00000120094) #28	HOXB2 (ENSG00000173917) #29	HOXB3 (ENSG00000120093) #31	HOXB4 (ENSG00000182742) #30	HOXB5 (ENSG00000120075) #32	HOXB6 (ENSG00000108511) #33	HOXB7 (ENSG00000260027) #34	HOXB8 (ENSG00000120068) #35	HOXB9 (ENSG00000170689) #36	PRAC1 (ENSG00000159182) #37
Orangutan	MODERN SPECIES	11	FOXS1 (ENSPPYG00000010894)	MYLK2 (ENSPPYG00000010893)	TPX2 (ENSPPYG00000010892)	BCL2L1 (ENSPPYG00000010890)	COX4I2 (ENSPPYG00000029465)	ID1 (ENSPPYG00000010889)	HM13 (ENSPPYG00000010888)	REM1 (ENSPPYG00000010886)	DEFB124 (ENSPPYG00000034384)	DEFB123 (ENSPPYG00000010884)	ENSPPYG00000010883	DEFB121 (ENSPPYG00000010882)	ENSPPYG00000010881	DEFB118 (ENSPPYG00000010880)	DEFB116 (ENSPPYG00000034032)	ENSPPYG00000032511 #22	DEFB115 (ENSPPYG00000010879)	DEFB125 (ENSPPYG00000010878)	DEFB126 (ENSPPYG00000010877)	DEFB127 (ENSPPYG00000010876)	DEFB129 (ENSPPYG00000010874)	DEFB132 (ENSPPYG00000010873)	ZCCHC3 (ENSPPYG00000010871)	C20orf96 (ENSPPYG00000010872)	SOX12 (ENSPPYG00000010870)	NRSN2 (ENSPPYG00000030783)	TRIB3 (ENSPPYG00000010869)	RBCK1 (ENSPPYG00000010868)	ENSPPYG00000032461	TBC1D20 (ENSPPYG00000010867)	CSNK2A1 (ENSPPYG00000010866)
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246.j.b.b	ENSGT00940000155246.i	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603.b #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713.h.b #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000165611 #37
Hominidae	ANCESTRAL SPECIES																	ENSGT00390000000713.h.b #22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00390000000713.h.b #22
Gorilla	MODERN SPECIES	18	ITGB3 (ENSGGOG00000007757)	ENSGGOG00000023488	EFCAB13 (ENSGGOG00000022715)	ENSGGOG00000022991	KPNB1 (ENSGGOG00000008089)	TBKBP1 (ENSGGOG00000002206)	TBX21 (ENSGGOG00000002208)	OSBPL7 (ENSGGOG00000015344) #14	MRPL10 (ENSGGOG00000015353) #15	LRRC46 (ENSGGOG00000012667) #16	SCRN2 (ENSGGOG00000004547) #17	SP6 (ENSGGOG00000036261) #18	SP2 (ENSGGOG00000005330) #19	PNPO (ENSGGOG00000003786) #20	PRR15L (ENSGGOG00000037816) #21	ENSGGOG00000022994 #22	COPZ2 (ENSGGOG00000002264) #23	NFE2L1 (ENSGGOG00000002268) #24	CBX1 (ENSGGOG00000024063) #25	ENSGGOG00000025896	SKAP1 (ENSGGOG00000012624) #27	HOXB1 (ENSGGOG00000009904) #28	HOXB2 (ENSGGOG00000009910) #29	HOXB3 (ENSGGOG00000012838) #31	HOXB5 (ENSGGOG00000023582) #32	HOXB6 (ENSGGOG00000002634) #33	HOXB7 (ENSGGOG00000002637) #34	HOXB8 (ENSGGOG00000039810) #35	ENSGGOG00000036688 #36	PRAC1 (ENSGGOG00000027105) #37	ENSGGOG00000042122
Orangutan	MODERN SPECIES	8	ENSPPYG00000039847	GPR179 (ENSPPYG00000008874)	MRPL45 (ENSPPYG00000008876)	NPEPPS (ENSPPYG00000008877)	KPNB1 (ENSPPYG00000025935)	TBKBP1 (ENSPPYG00000008878)	TBX21 (ENSPPYG00000008879)	OSBPL7 (ENSPPYG00000008880) #14	MRPL10 (ENSPPYG00000008881) #15	LRRC46 (ENSPPYG00000032761) #16	SCRN2 (ENSPPYG00000008883) #17	SP6 (ENSPPYG00000008884) #18	SP2 (ENSPPYG00000008885) #19	PNPO (ENSPPYG00000040967) #20	PRR15L (ENSPPYG00000008887) #21	CDK5RAP3 (ENSPPYG00000008888) #22	ENSPPYG00000008889 #23	NFE2L1 (ENSPPYG00000036998) #24	ENSPPYG00000008891 ##25	SNX11 (ENSPPYG00000008892) #26	SKAP1 (ENSPPYG00000008893) #27	HOXB1 (ENSPPYG00000008894) #28	HOXB2 (ENSPPYG00000008895) #29	HOXB3 (ENSPPYG00000008896) #31	HOXB4 (ENSPPYG00000008897) #30	HOXB5 (ENSPPYG00000008898) #32	HOXB6 (ENSPPYG00000008899) #33	HOXB7 (ENSPPYG00000008901) #34	HOXB8 (ENSPPYG00000038542) #35	HOXB9 (ENSPPYG00000008902) #36	PRAC1 (ENSPPYG00000008903) #37
Gibbon	MODERN SPECIES	105					KPNB1 (ENSNLEG00000001446)	ENSNLEG00000032565	ENSNLEG00000001655	OSBPL7 (ENSNLEG00000001657) #14	MRPL10 (ENSNLEG00000001803) #15	LRRC46 (ENSNLEG00000001902) #16	SCRN2 (ENSNLEG00000001940) #17	SP6 (ENSNLEG00000002050) #18	ENSNLEG00000002058 #19	PNPO (ENSNLEG00000002062) #20	PRR15L (ENSNLEG00000002102) #21	ENSNLEG00000002109 #22	ENSNLEG00000002409 #23	NFE2L1 (ENSNLEG00000002415) #24	ENSNLEG00000002435 #25	SNX11 (ENSNLEG00000002479) #26	SKAP1 (ENSNLEG00000002519) #27	ENSNLEG00000018815 #28	HOXB2 (ENSNLEG00000002566) #29	HOXB4 (ENSNLEG00000002570) #30	HOXB5 (ENSNLEG00000002574) #32	HOXB6 (ENSNLEG00000002585) #33	ENSNLEG00000029075	ENSNLEG00000036120	HOXB13 (ENSNLEG00000002594)	TTLL6 (ENSNLEG00000002601)	CALCOCO2 (ENSNLEG00000002619)
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898.b	ENSGT00550000074898.a	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Cebidae	ANCESTRAL SPECIES	10	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898.b	ENSGT00550000074898.a	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000154172.gb.b.b.b	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Marmoset	MODERN SPECIES	17	GPR179 (ENSCJAG00000008100)	MRPL45 (ENSCJAG00000008080)	ENSCJAG00000048573	NPEPPS (ENSCJAG00000007985)	KPNB1 (ENSCJAG00000007834)	TBKBP1 (ENSCJAG00000045710)	TBX21 (ENSCJAG00000007796)	OSBPL7 (ENSCJAG00000007585) #14	MRPL10 (ENSCJAG00000007787) #15	LRRC46 (ENSCJAG00000007776) #16	SCRN2 (ENSCJAG00000047705) #17	SP6 (ENSCJAG00000043946) #18	SP2 (ENSCJAG00000007713) #19	PNPO (ENSCJAG00000007693) #20	PRR15L (ENSCJAG00000044487) #21	CDK5RAP3 (ENSCJAG00000007669) #22	COPZ2 (ENSCJAG00000007567) #23	ENSCJAG00000058197	NFE2L1 (ENSCJAG00000007542) #24	CBX1 (ENSCJAG00000042052) #25	SNX11 (ENSCJAG00000039549) #26	SKAP1 (ENSCJAG00000007504) #27	ENSCJAG00000038853	HOXB1 (ENSCJAG00000007496) #28	HOXB2 (ENSCJAG00000007494) #29	HOXB3 (ENSCJAG00000007487) #31	HOXB4 (ENSCJAG00000007480) #30	HOXB5 (ENSCJAG00000007472) #32	HOXB6 (ENSCJAG00000007467) #33	HOXB7 (ENSCJAG00000007457) #34	HOXB8 (ENSCJAG00000045730) #35
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898.b	ENSGT00550000074898.a	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000154172.gb.b.b.b	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Bolivian squirrel monkey	MODERN SPECIES	86	GPR179 (ENSSBOG00000022698)	MRPL45 (ENSSBOG00000028242)	NPEPPS (ENSSBOG00000032725)	KPNB1 (ENSSBOG00000030025)	ENSSBOG00000014766	ENSSBOG00000029189	TBX21 (ENSSBOG00000028744)	OSBPL7 (ENSSBOG00000033435) #14	MRPL10 (ENSSBOG00000004214) #15	LRRC46 (ENSSBOG00000026980) #16	SCRN2 (ENSSBOG00000027391) #17	SP6 (ENSSBOG00000014210) #18	SP2 (ENSSBOG00000029098) #19	PNPO (ENSSBOG00000021213) #20	PRR15L (ENSSBOG00000019240) #21	CDK5RAP3 (ENSSBOG00000033272) #22	COPZ2 (ENSSBOG00000033633) #23	NFE2L1 (ENSSBOG00000023867) #24	ENSSBOG00000031880 ##25	SNX11 (ENSSBOG00000026967) #26	SKAP1 (ENSSBOG00000029434) #27	ENSSBOG00000019520	HOXB1 (ENSSBOG00000034875) #28	HOXB2 (ENSSBOG00000025070) #29	HOXB3 (ENSSBOG00000030844) #31	HOXB4 (ENSSBOG00000024432) #30	HOXB5 (ENSSBOG00000018198) #32	HOXB6 (ENSSBOG00000031900) #33	HOXB7 (ENSSBOG00000020028) #34	HOXB8 (ENSSBOG00000034884) #35	HOXB9 (ENSSBOG00000030218) #36
Capuchin	MODERN SPECIES	228	ARHGAP23 (ENSCCAG00000025162)	SOCS7 (ENSCCAG00000033044)	GPR179 (ENSCCAG00000037056)	MRPL45 (ENSCCAG00000034579)	NPEPPS (ENSCCAG00000035472)	ENSCCAG00000029263	TBKBP1 (ENSCCAG00000026129)	TBX21 (ENSCCAG00000026112)	OSBPL7 (ENSCCAG00000034097) #14	MRPL10 (ENSCCAG00000023150) #15	LRRC46 (ENSCCAG00000030568) #16	SCRN2 (ENSCCAG00000031435) #17	SP6 (ENSCCAG00000020330) #18	SP2 (ENSCCAG00000038047) #19	PNPO (ENSCCAG00000029175) #20	CDK5RAP3 (ENSCCAG00000038053) #22	COPZ2 (ENSCCAG00000021292) #23	NFE2L1 (ENSCCAG00000029090) #24	CBX1 (ENSCCAG00000025085) #25	SNX11 (ENSCCAG00000030167) #26	SKAP1 (ENSCCAG00000035663) #27	ENSCCAG00000019181	HOXB1 (ENSCCAG00000027667) #28	HOXB2 (ENSCCAG00000024035) #29	HOXB3 (ENSCCAG00000013598) #31	HOXB4 (ENSCCAG00000020311) #30	HOXB5 (ENSCCAG00000036867) #32	HOXB6 (ENSCCAG00000022842) #33	HOXB8 (ENSCCAG00000026051) #35	HOXB9 (ENSCCAG00000035938) #36	HOXB7 (ENSCCAG00000023947) #34
Mas night monkey	MODERN SPECIES	481	SOCS7 (ENSANAG00000028278)	GPR179 (ENSANAG00000033667)	MRPL45 (ENSANAG00000028167)	NPEPPS (ENSANAG00000028371)	ENSANAG00000019395	ENSANAG00000024932	TBKBP1 (ENSANAG00000020710)	TBX21 (ENSANAG00000037999)	OSBPL7 (ENSANAG00000021406) #14	MRPL10 (ENSANAG00000022792) #15	LRRC46 (ENSANAG00000028496) #16	SCRN2 (ENSANAG00000021482) #17	SP6 (ENSANAG00000019338) #18	SP2 (ENSANAG00000032738) #19	PNPO (ENSANAG00000026080) #20	CDK5RAP3 (ENSANAG00000021880) #22	COPZ2 (ENSANAG00000023309) #23	NFE2L1 (ENSANAG00000027606) #24	ENSANAG00000036853 ##25	SNX11 (ENSANAG00000022588) #26	SKAP1 (ENSANAG00000026853) #27	ENSANAG00000023400	HOXB1 (ENSANAG00000032306) #28	HOXB2 (ENSANAG00000023626) #29	HOXB3 (ENSANAG00000032072) #31	HOXB4 (ENSANAG00000024005) #30	HOXB5 (ENSANAG00000024299) #32	HOXB6 (ENSANAG00000023964) #33	HOXB7 (ENSANAG00000025513) #34	HOXB8 (ENSANAG00000028346) #35	HOXB9 (ENSANAG00000035156) #36
Tarsier	MODERN SPECIES	7208									OSBPL7 (ENSTSYG00000014378) #14	MRPL10 (ENSTSYG00000034759) #15	LRRC46 (ENSTSYG00000003710) #16	SCRN2 (ENSTSYG00000003730) #17	SP6 (ENSTSYG00000031192) #18	SP2 (ENSTSYG00000013766) #19	PNPO (ENSTSYG00000002012) #20	CDK5RAP3 (ENSTSYG00000010313) #22	COPZ2 (ENSTSYG00000030074) #23	NFE2L1 (ENSTSYG00000011468) #24	CBX1 (ENSTSYG00000034806) #25	SNX11 (ENSTSYG00000035487) #26	SKAP1 (ENSTSYG00000008218) #27
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590.h #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00950000185410	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590.h #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00950000185410	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Mouse lemur	MODERN SPECIES	7	ARHGAP23 (ENSMICG00000000638)	SOCS7 (ENSMICG00000000636)	GPR179 (ENSMICG00000000628)	MRPL45 (ENSMICG00000000626)	NPEPPS (ENSMICG00000012034)	KPNB1 (ENSMICG00000012059)	TBKBP1 (ENSMICG00000012069)	TBX21 (ENSMICG00000035345)	OSBPL7 (ENSMICG00000004799) #14	MRPL10 (ENSMICG00000048091) #15	LRRC46 (ENSMICG00000004816) #16	SCRN2 (ENSMICG00000004823) #17	SP6 (ENSMICG00000047695) #18	SP2 (ENSMICG00000036051) #19	ENSMICG00000014065 #20	CDK5RAP3 (ENSMICG00000014077) #22	COPZ2 (ENSMICG00000014097) #23	ENSMICG00000009510 #25	NFE2L1 (ENSMICG00000014716) #24	SNX11 (ENSMICG00000014741) #26	ENSMICG00000029923	SKAP1 (ENSMICG00000047158) #27	HOXB1 (ENSMICG00000048152) #28	HOXB2 (ENSMICG00000038222) #29	HOXB3 (ENSMICG00000007522) #31	HOXB4 (ENSMICG00000043173) #30	HOXB5 (ENSMICG00000047139) #32	HOXB6 (ENSMICG00000042216) #33	HOXB7 (ENSMICG00000007539) #34	HOXB8 (ENSMICG00000045961) #35	HOXB9 (ENSMICG00000038413) #36
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590.h #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00950000185410	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Coquerels sifaka	MODERN SPECIES	120	SOCS7 (ENSPCOG00000023874)	GPR179 (ENSPCOG00000007958)	MRPL45 (ENSPCOG00000014660)	ENSPCOG00000027158	ENSPCOG00000014331	KPNB1 (ENSPCOG00000026259)	TBKBP1 (ENSPCOG00000026427)	TBX21 (ENSPCOG00000014387)	OSBPL7 (ENSPCOG00000019714) #14	MRPL10 (ENSPCOG00000025492) #15	LRRC46 (ENSPCOG00000015829) #16	SCRN2 (ENSPCOG00000014438) #17	SP6 (ENSPCOG00000008529) #18	SP2 (ENSPCOG00000017198) #19	PNPO (ENSPCOG00000017906) #20	CDK5RAP3 (ENSPCOG00000016598) #22	COPZ2 (ENSPCOG00000018359) #23	NFE2L1 (ENSPCOG00000021740) #24	ENSPCOG00000010902 #25	SNX11 (ENSPCOG00000011015) #26	SKAP1 (ENSPCOG00000022221) #27	HOXB1 (ENSPCOG00000025930) #28	HOXB2 (ENSPCOG00000017380) #29	HOXB3 (ENSPCOG00000020113) #31	HOXB4 (ENSPCOG00000022963) #30	HOXB5 (ENSPCOG00000015692) #32	HOXB6 (ENSPCOG00000019931) #33	HOXB7 (ENSPCOG00000028248) #34	HOXB8 (ENSPCOG00000024853) #35	HOXB9 (ENSPCOG00000027130) #36	HOXB13 (ENSPCOG00000018182)
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	107	GPR179 (ENSPSMG00000008075)	MRPL45 (ENSPSMG00000008060)	NPEPPS (ENSPSMG00000007984)	KPNB1 (ENSPSMG00000007848)	TBKBP1 (ENSPSMG00000007810)	TBX21 (ENSPSMG00000007791)	OSBPL7 (ENSPSMG00000007730) #14	MRPL10 (ENSPSMG00000007514) #15	LRRC46 (ENSPSMG00000007500) #16	SCRN2 (ENSPSMG00000007491) #17	SP6 (ENSPSMG00000007463) #18	ENSPSMG00000007462 #19	SP2 (ENSPSMG00000007456) #19	PNPO (ENSPSMG00000007445) #20	PRR15L (ENSPSMG00000007406) #21	ENSPSMG00000007395 #22	ENSPSMG00000007342	ENSPSMG00000007339 #23	NFE2L1 (ENSPSMG00000007285) #24
Greater bamboo lemur	MODERN SPECIES	2218																ENSPSMG00000003010 #22
Bushbaby	MODERN SPECIES	133	SOCS7 (ENSOGAG00000012422)	GPR179 (ENSOGAG00000031431)	MRPL45 (ENSOGAG00000015816)	NPEPPS (ENSOGAG00000006365)	KPNB1 (ENSOGAG00000006153)	TBKBP1 (ENSOGAG00000032523)	TBX21 (ENSOGAG00000006160)	OSBPL7 (ENSOGAG00000006166) #14	MRPL10 (ENSOGAG00000006173) #15	LRRC46 (ENSOGAG00000006177) #16	SCRN2 (ENSOGAG00000006181) #17	SP6 (ENSOGAG00000030282) #18	SP2 (ENSOGAG00000030380) #19	PNPO (ENSOGAG00000006186) #20	PRR15L (ENSOGAG00000006187) #21	CDK5RAP3 (ENSOGAG00000004951) #22	COPZ2 (ENSOGAG00000004954) #23	NFE2L1 (ENSOGAG00000025191) #24	CBX1 (ENSOGAG00000005658) #25	SNX11 (ENSOGAG00000015854) #26	SKAP1 (ENSOGAG00000015855) #27	HOXB1 (ENSOGAG00000031645) #28	HOXB2 (ENSOGAG00000029280) #29	HOXB3 (ENSOGAG00000032090) #31	HOXB4 (ENSOGAG00000033709) #30	HOXB5 (ENSOGAG00000032432) #32	HOXB6 (ENSOGAG00000008661) #33	HOXB7 (ENSOGAG00000008667) #34	HOXB8 (ENSOGAG00000029480) #35	HOXB9 (ENSOGAG00000008668) #36	ENSOGAG00000034464
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Tree shrew	MODERN SPECIES	256														PNPO (ENSTBEG00000004428) #20	PRR15L (ENSTBEG00000004526) #21	CDK5RAP3 (ENSTBEG00000004569) #22	COPZ2 (ENSTBEG00000004683) #23
Glires	ANCESTRAL SPECIES	3	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029	ENSGT00940000161434	ENSGT00950000183025.a
Rabbit	MODERN SPECIES	10	SOCS7 (ENSOCUG00000015724)	GPR179 (ENSOCUG00000015704)	MRPL45 (ENSOCUG00000015690)	NPEPPS (ENSOCUG00000015748)	KPNB1 (ENSOCUG00000015425)	TBKBP1 (ENSOCUG00000014771)	TBX21 (ENSOCUG00000012907)	OSBPL7 (ENSOCUG00000009447) #14	MRPL10 (ENSOCUG00000009452) #15	LRRC46 (ENSOCUG00000009453) #16	SCRN2 (ENSOCUG00000009457) #17	SP6 (ENSOCUG00000023482) #18	SP2 (ENSOCUG00000027415) #19	PNPO (ENSOCUG00000017484) #20	PRR15L (ENSOCUG00000017489) #21	CDK5RAP3 (ENSOCUG00000012325) #22	COPZ2 (ENSOCUG00000001802) #23	NFE2L1 (ENSOCUG00000022298) #24	CBX1 (ENSOCUG00000008021) #25	SNX11 (ENSOCUG00000002309) #26	SKAP1 (ENSOCUG00000001717) #27	HOXB1 (ENSOCUG00000001720) #28	HOXB2 (ENSOCUG00000024951) #29	HOXB3 (ENSOCUG00000023337) #31	HOXB6 (ENSOCUG00000011560) #33	HOXB5 (ENSOCUG00000023093) #32	HOXB8 (ENSOCUG00000029186) #35	HOXB9 (ENSOCUG00000027316) #36	HOXB13 (ENSOCUG00000012816)	TTLL6 (ENSOCUG00000006289)	ENSOCUG00000038154
Pika	MODERN SPECIES	633					NPEPPS (ENSOPRG00000003735)	KPNB1 (ENSOPRG00000003795)	TBKBP1 (ENSOPRG00000003843)	TBX21 (ENSOPRG00000003888)	OSBPL7 (ENSOPRG00000003904) #14	MRPL10 (ENSOPRG00000003949) #15	LRRC46 (ENSOPRG00000003963) #16	SCRN2 (ENSOPRG00000003992) #17	SP6 (ENSOPRG00000004019) #18	SP2 (ENSOPRG00000004048) #19	PNPO (ENSOPRG00000004080) #20	CDK5RAP3 (ENSOPRG00000004107) #22
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679.o	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679.o	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Arctic ground squirrel	MODERN SPECIES	46	SOCS7 (ENSUPAG00010006716)	GPR179 (ENSUPAG00010006698)	ENSUPAG00010006685	NPEPPS (ENSUPAG00010006649)	KPNB1 (ENSUPAG00010006624)	TBKBP1 (ENSUPAG00010006591)	TBX21 (ENSUPAG00010006582)	OSBPL7 (ENSUPAG00010006545) #14	MRPL10 (ENSUPAG00010006539) #15	LRRC46 (ENSUPAG00010006533) #16	SCRN2 (ENSUPAG00010006526) #17	SP6 (ENSUPAG00010006522) #18	SP2 (ENSUPAG00010006507) #19	PNPO (ENSUPAG00010006483) #20	PRR15L (ENSUPAG00010006473) #21	CDK5RAP3 (ENSUPAG00010006466) #22	COPZ2 (ENSUPAG00010006455) #23	NFE2L1 (ENSUPAG00010006396) #24	CBX1 (ENSUPAG00010006381) #25	SNX11 (ENSUPAG00010006370) #26	SKAP1 (ENSUPAG00010006345) #27	HOXB1 (ENSUPAG00010006340) #28	HOXB2 (ENSUPAG00010006336) #29	HOXB3 (ENSUPAG00010006328) #31	HOXB4 (ENSUPAG00010006325) #30	HOXB5 (ENSUPAG00010006320) #32	HOXB6 (ENSUPAG00010006317) #33	HOXB7 (ENSUPAG00010006312) #34	HOXB8 (ENSUPAG00010006310) #35	HOXB9 (ENSUPAG00010006305) #36	HOXB13 (ENSUPAG00010006301)
Squirrel	MODERN SPECIES	90	SOCS7 (ENSSTOG00000000068)	GPR179 (ENSSTOG00000024299)	ENSSTOG00000000304	NPEPPS (ENSSTOG00000004901)	KPNB1 (ENSSTOG00000007896)	TBKBP1 (ENSSTOG00000023713)	TBX21 (ENSSTOG00000001626)	OSBPL7 (ENSSTOG00000001636) #14	MRPL10 (ENSSTOG00000024617) #15	LRRC46 (ENSSTOG00000002068) #16	SCRN2 (ENSSTOG00000027108) #17	SP6 (ENSSTOG00000001607) #18	SP2 (ENSSTOG00000015926) #19	PNPO (ENSSTOG00000006221) #20	PRR15L (ENSSTOG00000006235) #21	CDK5RAP3 (ENSSTOG00000006244) #22	ENSSTOG00000027550 #23	NFE2L1 (ENSSTOG00000013664) #24	CBX1 (ENSSTOG00000023986) #25	SNX11 (ENSSTOG00000013684) #26	SKAP1 (ENSSTOG00000013692) #27	HOXB1 (ENSSTOG00000028630) #28	HOXB2 (ENSSTOG00000023586) #29	HOXB3 (ENSSTOG00000025093) #31	HOXB4 (ENSSTOG00000009734) #30	HOXB5 (ENSSTOG00000009740) #32	HOXB6 (ENSSTOG00000020303) #33	HOXB7 (ENSSTOG00000025657) #34	HOXB8 (ENSSTOG00000028337) #35	HOXB9 (ENSSTOG00000009741) #36	HOXB13 (ENSSTOG00000014942)
Alpin marmot	MODERN SPECIES	42	NMT1 (ENSMMMG00000002632)	PLCD3 (ENSMMMG00000002605)	ACBD4 (ENSMMMG00000002555)	HEXIM1 (ENSMMMG00000002544)	HEXIM2 (ENSMMMG00000002534)	FMNL1 (ENSMMMG00000002279)	ENSMMMG00000002245	MAP3K14 (ENSMMMG00000002213)	ENSMMMG00000001792	ENSMMMG00000001756	ENSMMMG00000001551	ENSMMMG00000001520	LYZL6 (ENSMMMG00000001501)	RPRML (ENSMMMG00000001486)	GOSR2 (ENSMMMG00000001471)	CDK5RAP3 (ENSMMMG00000001404) #22	COPZ2 (ENSMMMG00000001352) #23	NFE2L1 (ENSMMMG00000001284) #24	CBX1 (ENSMMMG00000001254) #25	SNX11 (ENSMMMG00000001243) #26	SKAP1 (ENSMMMG00000001168) #27	HOXB1 (ENSMMMG00000001151) #28	HOXB3 (ENSMMMG00000001139) #31	HOXB4 (ENSMMMG00000001129) #30	HOXB5 (ENSMMMG00000001112) #32	HOXB6 (ENSMMMG00000001098) #33	HOXB7 (ENSMMMG00000001087) #34	HOXB13 (ENSMMMG00000001064)	TTLL6 (ENSMMMG00000001013)	ENSMMMG00000000759	ATP5MC1 (ENSMMMG00000000731)
Eurasian red squirrel	MODERN SPECIES	12	GPR179 (ENSSVLG00005016761)	ENSSVLG00005017021	MRPL45 (ENSSVLG00005017084)	NPEPPS (ENSSVLG00005017198)	KPNB1 (ENSSVLG00005017557)	TBKBP1 (ENSSVLG00005017602)	TBX21 (ENSSVLG00005017653)	OSBPL7 (ENSSVLG00005017757) #14	MRPL10 (ENSSVLG00005017985) #15	LRRC46 (ENSSVLG00005018036) #16	SCRN2 (ENSSVLG00005018077) #17	SP6 (ENSSVLG00005018194) #18	ENSSVLG00005018218 #19	PNPO (ENSSVLG00005018295) #20	PRR15L (ENSSVLG00005018399) #21	CDK5RAP3 (ENSSVLG00005018459) #22	COPZ2 (ENSSVLG00005018641) #23	NFE2L1 (ENSSVLG00005018798) #24	CBX1 (ENSSVLG00005019034) #25	SNX11 (ENSSVLG00005019122) #26	SKAP1 (ENSSVLG00005019232) #27	HOXB1 (ENSSVLG00005019304) #28	HOXB2 (ENSSVLG00005019378) #29	HOXB3 (ENSSVLG00005019421) #31	HOXB4 (ENSSVLG00005019455) #30	HOXB5 (ENSSVLG00005019546) #32	HOXB6 (ENSSVLG00005019586) #33	HOXB7 (ENSSVLG00005019618) #34	HOXB8 (ENSSVLG00005019675) #35	HOXB9 (ENSSVLG00005019725) #36	HOXB13 (ENSSVLG00005019820)
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Guinea pig	MODERN SPECIES	53	SOCS7 (ENSCPOG00000011473)	GPR179 (ENSCPOG00000027503)	MRPL45 (ENSCPOG00000001574)	NPEPPS (ENSCPOG00000006559)	KPNB1 (ENSCPOG00000006566)	TBKBP1 (ENSCPOG00000036345)	TBX21 (ENSCPOG00000026273)	OSBPL7 (ENSCPOG00000006914) #14	MRPL10 (ENSCPOG00000037104) #15	LRRC46 (ENSCPOG00000006925) #16	SCRN2 (ENSCPOG00000006929) #17	SP6 (ENSCPOG00000007638) #18	SP2 (ENSCPOG00000014943) #19	PNPO (ENSCPOG00000003187) #20	PRR15L (ENSCPOG00000035567) #21	CDK5RAP3 (ENSCPOG00000007275) #22	COPZ2 (ENSCPOG00000019500) #23	NFE2L1 (ENSCPOG00000030805) #24	CBX1 (ENSCPOG00000034435) #25	SNX11 (ENSCPOG00000020234) #26	SKAP1 (ENSCPOG00000022118) #27	HOXB1 (ENSCPOG00000022183) #28	HOXB2 (ENSCPOG00000035468) #29	ENSCPOG00000010107 #31	ENSCPOG00000010105	HOXB5 (ENSCPOG00000030746) #32	HOXB6 (ENSCPOG00000040707) #33	HOXB9 (ENSCPOG00000037597) #36	HOXB13 (ENSCPOG00000013509)	TTLL6 (ENSCPOG00000012509)	CALCOCO2 (ENSCPOG00000021273)
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Degu	DUPLICATION
Degu	MODERN SPECIES	97	ARHGAP23 (ENSODEG00000017612)	GPR179 (ENSODEG00000017327)	MRPL45 (ENSODEG00000017631)	SOCS7 (ENSODEG00000017559)	NPEPPS (ENSODEG00000017337)	KPNB1 (ENSODEG00000017287)	ENSODEG00000017455	TBX21 (ENSODEG00000017610)	OSBPL7 (ENSODEG00000017364) #14	MRPL10 (ENSODEG00000017536) #15	LRRC46 (ENSODEG00000017367) #16	SCRN2 (ENSODEG00000017395) #17	SP6 (ENSODEG00000017625) #18	SP2 (ENSODEG00000017126) #19	PNPO (ENSODEG00000017424) #20	ENSODEG00000017229 #22	COPZ2 (ENSODEG00000017565) #23	ENSODEG00000020421	NFE2L1 (ENSODEG00000017348) #24	CBX1 (ENSODEG00000017272) #25	SNX11 (ENSODEG00000017458) #26	SKAP1 (ENSODEG00000017533) #27	HOXB1 (ENSODEG00000017050) #28	HOXB2 (ENSODEG00000017153) #29	HOXB3 (ENSODEG00000017116) #31	HOXB4 (ENSODEG00000017038) #30	HOXB5 (ENSODEG00000017253) #32	HOXB6 (ENSODEG00000016988) #33	HOXB8 (ENSODEG00000017119) #35	HOXB9 (ENSODEG00000017293) #36	HOXB13 (ENSODEG00000017199)
Degu	MODERN SPECIES	199				GRXCR1 (ENSODEG00000002720)	ATP8A1 (ENSODEG00000002386)	SHISA3 (ENSODEG00000002237)	ENSODEG00000018813	BEND4 (ENSODEG00000002205)	SLC30A9 (ENSODEG00000003084)	ENSODEG00000018861	TMEM33 (ENSODEG00000003005)	ENSODEG00000002986	PHOX2B (ENSODEG00000002961)	ENSODEG00000002940	ENSODEG00000018864	ENSODEG00000002924 #22	UCHL1 (ENSODEG00000002591)	ENSODEG00000002557	ENSODEG00000002540	ENSODEG00000002526	NSUN7 (ENSODEG00000002345)	RBM47 (ENSODEG00000004873)	CHRNA9 (ENSODEG00000004847)	RHOH (ENSODEG00000019284)	ENSODEG00000004833	ENSODEG00000004818	N4BP2 (ENSODEG00000004780)	ENSODEG00000019119	PDS5A (ENSODEG00000003973)	UBE2K (ENSODEG00000003840)	ENSODEG00000003741
Long-tailed chinchilla	MODERN SPECIES	158	SOCS7 (ENSCLAG00000015232)	GPR179 (ENSCLAG00000014803)	MRPL45 (ENSCLAG00000015324)	NPEPPS (ENSCLAG00000016661)	KPNB1 (ENSCLAG00000017091)	ENSCLAG00000015338	TBX21 (ENSCLAG00000015235)	OSBPL7 (ENSCLAG00000014839) #14	MRPL10 (ENSCLAG00000015400) #15	SCRN2 (ENSCLAG00000013965) #17	LRRC46 (ENSCLAG00000016713) #16	SP6 (ENSCLAG00000016276) #18	SP2 (ENSCLAG00000014115) #19	PNPO (ENSCLAG00000013871) #20	PRR15L (ENSCLAG00000017903) #21	CDK5RAP3 (ENSCLAG00000012292) #22	COPZ2 (ENSCLAG00000013544) #23	NFE2L1 (ENSCLAG00000014836) #24	CBX1 (ENSCLAG00000013587) #25	SNX11 (ENSCLAG00000015837) #26	SKAP1 (ENSCLAG00000015423) #27	HOXB1 (ENSCLAG00000013047) #28	HOXB2 (ENSCLAG00000015271) #29	HOXB3 (ENSCLAG00000015322) #31	HOXB4 (ENSCLAG00000014725) #30	HOXB5 (ENSCLAG00000014374) #32	HOXB6 (ENSCLAG00000015524) #33	HOXB7 (ENSCLAG00000014906) #34	ENSCLAG00000015198 #36	HOXB13 (ENSCLAG00000014855)	TTLL6 (ENSCLAG00000013529)
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000041148	ENSHGLG00000050482	ENSHGLG00000010863	ENSHGLG00000012466	KPNB1 (ENSHGLG00000014138)	TBKBP1 (ENSHGLG00000049817)	TBX21 (ENSHGLG00000012216)	OSBPL7 (ENSHGLG00000012525) #14	MRPL10 (ENSHGLG00000048399) #15	LRRC46 (ENSHGLG00000035931) #16	SCRN2 (ENSHGLG00000041375) #17	SP6 (ENSHGLG00000021113) #18	SP2 (ENSHGLG00000009902) #19	PNPO (ENSHGLG00000013159) #20	PRR15L (ENSHGLG00000014696) #21	CDK5RAP3 (ENSHGLG00000019464) #22	COPZ2 (ENSHGLG00000018543) #23	NFE2L1 (ENSHGLG00000012592) #24	CBX1 (ENSHGLG00000013574) #25	SNX11 (ENSHGLG00000016837) #26	SKAP1 (ENSHGLG00000014563) #27	HOXB1 (ENSHGLG00000009781) #28	HOXB2 (ENSHGLG00000010090) #29	HOXB3 (ENSHGLG00000010686) #31	HOXB4 (ENSHGLG00000034075) #30	HOXB5 (ENSHGLG00000039265) #32	HOXB6 (ENSHGLG00000012400) #33	HOXB7 (ENSHGLG00000045318) #34	HOXB8 (ENSHGLG00000038380) #35	HOXB9 (ENSHGLG00000014731) #36	ENSHGLG00000048296
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Kangaroo rat	MODERN SPECIES	89																ENSDORG00000025270 #22
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Muroidea	ANCESTRAL SPECIES		ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000154152.d.a.a ##25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Prairie vole	MODERN SPECIES	114	Socs7 (ENSMOCG00000015144)	ENSMOCG00000022822	Mrpl45 (ENSMOCG00000002139)	Npepps (ENSMOCG00000011600)	Kpnb1 (ENSMOCG00000003683)	Tbkbp1 (ENSMOCG00000017020)	Tbx21 (ENSMOCG00000004097)	Osbpl7 (ENSMOCG00000021054) #14	Mrpl10 (ENSMOCG00000019451) #15	Lrrc46 (ENSMOCG00000016707) #16	Scrn2 (ENSMOCG00000019511) #17	Sp6 (ENSMOCG00000007065) #18	Sp2 (ENSMOCG00000020935) #19	Pnpo (ENSMOCG00000011655) #20	Prr15l (ENSMOCG00000006695) #21	Cdk5rap3 (ENSMOCG00000019534) #22	Copz2 (ENSMOCG00000022427) #23	Nfe2l1 (ENSMOCG00000016002) #24	Cbx1 (ENSMOCG00000001520) #25	Snx11 (ENSMOCG00000019303) #26	Skap1 (ENSMOCG00000018431) #27	Hoxb1 (ENSMOCG00000002452) #28	Hoxb2 (ENSMOCG00000014846) #29	Hoxb3 (ENSMOCG00000020739) #31	Hoxb4 (ENSMOCG00000022964) #30	Hoxb5 (ENSMOCG00000014523) #32	Hoxb6 (ENSMOCG00000020355) #33	Hoxb7 (ENSMOCG00000020820) #34	Hoxb8 (ENSMOCG00000018435) #35	Hoxb9 (ENSMOCG00000020312) #36	Hoxb13 (ENSMOCG00000021389)
Northern American deer mouse	MODERN SPECIES	21	ENSPEMG00000027307	Mrpl45 (ENSPEMG00000005654)	Npepps (ENSPEMG00000012220)	Kpnb1 (ENSPEMG00000017783)	Tbkbp1 (ENSPEMG00000027762)	Tbx21 (ENSPEMG00000010056)	Osbpl7 (ENSPEMG00000001423) #14	Mrpl10 (ENSPEMG00000014613) #15	Lrrc46 (ENSPEMG00000020507) #16	Scrn2 (ENSPEMG00000020381) #17	Sp6 (ENSPEMG00000001231) #18	Sp2 (ENSPEMG00000017112) #19	Pnpo (ENSPEMG00000025094) #20	Prr15l (ENSPEMG00000024436) #21	ENSPEMG00000030963	Cdk5rap3 (ENSPEMG00000020712) #22	Copz2 (ENSPEMG00000011137) #23	Nfe2l1 (ENSPEMG00000010512) #24	Cbx1 (ENSPEMG00000020976) ##25	Snx11 (ENSPEMG00000000381) #26	ENSPEMG00000020286	Skap1 (ENSPEMG00000000585) #27	Hoxb1 (ENSPEMG00000023977) #28	Hoxb2 (ENSPEMG00000029510) #29	Hoxb3 (ENSPEMG00000028692) #31	Hoxb4 (ENSPEMG00000029805) #30	Hoxb5 (ENSPEMG00000030101) #32	Hoxb9 (ENSPEMG00000027158) #36	Hoxb13 (ENSPEMG00000021511)	Ttll6 (ENSPEMG00000021918)	ENSPEMG00000025676
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.a.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Chinese hamster chok1gshd	MODERN SPECIES	33	Socs7 (ENSCGRG00001021949)	Gpr179 (ENSCGRG00001014708)	Mrpl45 (ENSCGRG00001000066)	Npepps (ENSCGRG00001005930)	Kpnb1 (ENSCGRG00001016042)	Tbkbp1 (ENSCGRG00001018526)	Tbx21 (ENSCGRG00001008276)	Osbpl7 (ENSCGRG00001013737) #14	Mrpl10 (ENSCGRG00001024199) #15	Lrrc46 (ENSCGRG00001019758) #16	Scrn2 (ENSCGRG00001022143) #17	Sp6 (ENSCGRG00001002797) #18	Sp2 (ENSCGRG00001010976) #19	Pnpo (ENSCGRG00001018189) #20	Prr15l (ENSCGRG00001008926) #21	Cdk5rap3 (ENSCGRG00001006966) #22	Copz2 (ENSCGRG00001014767) #23	Nfe2l1 (ENSCGRG00001015287) #24	Cbx1 (ENSCGRG00001014799) ##25	Snx11 (ENSCGRG00001022221) #26	ENSCGRG00001020759 #27	ENSCGRG00001023355 #27	Hoxb1 (ENSCGRG00001024619) #28	Hoxb2 (ENSCGRG00001017587) #29	Hoxb3 (ENSCGRG00001016667) #31	Hoxb4 (ENSCGRG00001022431) #30	Hoxb5 (ENSCGRG00001016167) #32	Hoxb6 (ENSCGRG00001015674) #33	Hoxb7 (ENSCGRG00001021590) #34	Hoxb8 (ENSCGRG00001020235) #35	Hoxb9 (ENSCGRG00001015314) #36
Golden Hamster	MODERN SPECIES	674	Arhgap23 (ENSMAUG00000018856)	Socs7 (ENSMAUG00000015461)	ENSMAUG00000015632	Mrpl45 (ENSMAUG00000021636)	Npepps (ENSMAUG00000017383)	Kpnb1 (ENSMAUG00000006211)	Tbkbp1 (ENSMAUG00000018604)	Tbx21 (ENSMAUG00000017507)	Osbpl7 (ENSMAUG00000013876) #14	Mrpl10 (ENSMAUG00000000820) #15	Lrrc46 (ENSMAUG00000019416) #16	Scrn2 (ENSMAUG00000010014) #17	Sp6 (ENSMAUG00000009667) #18	Sp2 (ENSMAUG00000019269) #19	Pnpo (ENSMAUG00000021706) #20	Cdk5rap3 (ENSMAUG00000007991) #22	Copz2 (ENSMAUG00000010560) #23	Nfe2l1 (ENSMAUG00000020456) #24	ENSMAUG00000003463 #25	Snx11 (ENSMAUG00000021528) #26	Skap1 (ENSMAUG00000022191) #27	Hoxb1 (ENSMAUG00000013237) #28	Hoxb2 (ENSMAUG00000021979) #29	Hoxb3 (ENSMAUG00000011251) #31	Hoxb4 (ENSMAUG00000009367) #30	Hoxb5 (ENSMAUG00000021419) #32	Hoxb6 (ENSMAUG00000021423) #33	Hoxb7 (ENSMAUG00000021297) #34	Hoxb8 (ENSMAUG00000012636) #35	Hoxb9 (ENSMAUG00000017720) #36	Hoxb13 (ENSMAUG00000008407)
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Mus	ANCESTRAL SPECIES	2	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000153593.c.b.k	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000153593.c.b.k	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000153593.c.b.k	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Mouse	MODERN SPECIES	2	Socs7 (ENSMUSG00000038485)	Gpr179 (ENSMUSG00000070337)	Mrpl45 (ENSMUSG00000018882)	Npepps (ENSMUSG00000001441)	Kpnb1 (ENSMUSG00000001440)	Tbkbp1 (ENSMUSG00000038517)	Tbx21 (ENSMUSG00000001444)	Osbpl7 (ENSMUSG00000038534) #14	Mrpl10 (ENSMUSG00000001445) #15	Lrrc46 (ENSMUSG00000020878) #16	Scrn2 (ENSMUSG00000020877) #17	Sp6 (ENSMUSG00000038560) #18	Sp2 (ENSMUSG00000018678) #19	Pnpo (ENSMUSG00000018659) #20	Prr15l (ENSMUSG00000047040) #21	Cdk5rap3 (ENSMUSG00000018669) #22	Copz2 (ENSMUSG00000018672) #23	Nfe2l1 (ENSMUSG00000038615) #24	Cbx1 (ENSMUSG00000018666) #25	Snx11 (ENSMUSG00000020876) #26	Skap1 (ENSMUSG00000057058) #27	Hoxb1 (ENSMUSG00000018973) #28	Hoxb2 (ENSMUSG00000075588) #29	Hoxb3 (ENSMUSG00000048763) #31	Hoxb4 (ENSMUSG00000038692) #30	Hoxb5 (ENSMUSG00000038700) #32	Hoxb6 (ENSMUSG00000000690) #33	Hoxb7 (ENSMUSG00000038721) #34	Hoxb8 (ENSMUSG00000056648) #35	Hoxb9 (ENSMUSG00000020875) #36	Hoxb13 (ENSMUSG00000049604)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000153593.c.b.k	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Steppe mouse	MODERN SPECIES	3291	Socs7 (ENSMSIG00000017810)	Gpr179 (ENSMSIG00000017852)	Mrpl45 (ENSMSIG00000017873)	Npepps (ENSMSIG00000017886)	Kpnb1 (ENSMSIG00000017971)	Tbkbp1 (ENSMSIG00000018040)	Tbx21 (ENSMSIG00000018069)	Osbpl7 (ENSMSIG00000018093) #14	Mrpl10 (ENSMSIG00000018160) #15	Lrrc46 (ENSMSIG00000018171) #16	Scrn2 (ENSMSIG00000018202) #17	Sp6 (ENSMSIG00000018223) #18	Sp2 (ENSMSIG00000018237) #19	ENSMSIG00000018267 #20	ENSMSIG00000018270 #21	Cdk5rap3 (ENSMSIG00000018309) #22	Copz2 (ENSMSIG00000018337) #23	Nfe2l1 (ENSMSIG00000018374) #24	Cbx1 (ENSMSIG00000018447) #25	ENSMSIG00000018520	Snx11 (ENSMSIG00000018546) #26	Skap1 (ENSMSIG00000018601) #27	Hoxb1 (ENSMSIG00000018752) #28	Hoxb2 (ENSMSIG00000018769) #29	Hoxb3 (ENSMSIG00000018771) #31	ENSMSIG00000018776	Hoxb4 (ENSMSIG00000018777) #30	Hoxb5 (ENSMSIG00000018787) #32	Hoxb6 (ENSMSIG00000018795) #33	Hoxb7 (ENSMSIG00000018805) #34	Hoxb8 (ENSMSIG00000018807) #35
spretus	MODERN SPECIES	2	Socs7 (MGP_SPRETEiJ_G0017900)	Gpr179 (MGP_SPRETEiJ_G0017899)	Mrpl45 (MGP_SPRETEiJ_G0017898)	Npepps (MGP_SPRETEiJ_G0017897)	Kpnb1 (MGP_SPRETEiJ_G0017896)	Tbkbp1 (MGP_SPRETEiJ_G0017895)	Tbx21 (MGP_SPRETEiJ_G0017894)	Osbpl7 (MGP_SPRETEiJ_G0017893) #14	Mrpl10 (MGP_SPRETEiJ_G0017892) #15	Lrrc46 (MGP_SPRETEiJ_G0017891) #16	Scrn2 (MGP_SPRETEiJ_G0017890) #17	Sp6 (MGP_SPRETEiJ_G0017889) #18	Sp2 (MGP_SPRETEiJ_G0017888) #19	Pnpo (MGP_SPRETEiJ_G0017887) #20	Prr15l (MGP_SPRETEiJ_G0017886) #21	Cdk5rap3 (MGP_SPRETEiJ_G0017885) #22	Copz2 (MGP_SPRETEiJ_G0017884) #23	Nfe2l1 (MGP_SPRETEiJ_G0017883) #24	MGP_SPRETEiJ_G0017882	Cbx1 (MGP_SPRETEiJ_G0017881) #25	Snx11 (MGP_SPRETEiJ_G0017880) #26	MGP_SPRETEiJ_G0017879 #27	Hoxb1 (MGP_SPRETEiJ_G0017878) #28	Hoxb2 (MGP_SPRETEiJ_G0017877) #29	Hoxb3 (MGP_SPRETEiJ_G0017876) #31	Hoxb4 (MGP_SPRETEiJ_G0017875) #30	Hoxb5 (MGP_SPRETEiJ_G0017874) #32	Hoxb6 (MGP_SPRETEiJ_G0017873) #33	Hoxb7 (MGP_SPRETEiJ_G0017872) #34	Hoxb8 (MGP_SPRETEiJ_G0017871) #35	Hoxb9 (MGP_SPRETEiJ_G0017870) #36
Ryukyu mouse	MODERN SPECIES	2	Socs7 (MGP_CAROLIEiJ_G0017054)	Gpr179 (MGP_CAROLIEiJ_G0017053)	Mrpl45 (MGP_CAROLIEiJ_G0017052)	Npepps (MGP_CAROLIEiJ_G0017051)	Kpnb1 (MGP_CAROLIEiJ_G0017050)	Tbkbp1 (MGP_CAROLIEiJ_G0017049)	Tbx21 (MGP_CAROLIEiJ_G0017048)	Osbpl7 (MGP_CAROLIEiJ_G0017047) #14	Mrpl10 (MGP_CAROLIEiJ_G0017046) #15	Lrrc46 (MGP_CAROLIEiJ_G0017045) #16	MGP_CAROLIEiJ_G0017044 #17	Sp6 (MGP_CAROLIEiJ_G0017043) #18	Sp2 (MGP_CAROLIEiJ_G0017042) #19	Pnpo (MGP_CAROLIEiJ_G0017041) #20	Prr15l (MGP_CAROLIEiJ_G0017040) #21	Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #22	Copz2 (MGP_CAROLIEiJ_G0017038) #23	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #24	MGP_CAROLIEiJ_G0017036	Cbx1 (MGP_CAROLIEiJ_G0017035) #25	Snx11 (MGP_CAROLIEiJ_G0017034) #26	Skap1 (MGP_CAROLIEiJ_G0017033) #27	Hoxb1 (MGP_CAROLIEiJ_G0017032) #28	Hoxb2 (MGP_CAROLIEiJ_G0017031) #29	Hoxb3 (MGP_CAROLIEiJ_G0017030) #31	Hoxb4 (MGP_CAROLIEiJ_G0017029) #30	Hoxb5 (MGP_CAROLIEiJ_G0017028) #32	Hoxb6 (MGP_CAROLIEiJ_G0017027) #33	Hoxb7 (MGP_CAROLIEiJ_G0017026) #34	Hoxb8 (MGP_CAROLIEiJ_G0017025) #35	Hoxb9 (MGP_CAROLIEiJ_G0017024) #36
Shrew mouse	MODERN SPECIES	5	Arhgap23 (MGP_PahariEiJ_G0018184)	Socs7 (MGP_PahariEiJ_G0018183)	Gpr179 (MGP_PahariEiJ_G0018182)	MGP_PahariEiJ_G0018181	Npepps (MGP_PahariEiJ_G0018180)	Tbkbp1 (MGP_PahariEiJ_G0018179)	Tbx21 (MGP_PahariEiJ_G0018178)	Osbpl7 (MGP_PahariEiJ_G0018177) #14	Mrpl10 (MGP_PahariEiJ_G0018176) #15	Lrrc46 (MGP_PahariEiJ_G0018175) #16	Scrn2 (MGP_PahariEiJ_G0018174) #17	Sp6 (MGP_PahariEiJ_G0018173) #18	Sp2 (MGP_PahariEiJ_G0018172) #19	Pnpo (MGP_PahariEiJ_G0018171) #20	Prr15l (MGP_PahariEiJ_G0018170) #21	Cdk5rap3 (MGP_PahariEiJ_G0018169) #22	Copz2 (MGP_PahariEiJ_G0018168) #23	Nfe2l1 (MGP_PahariEiJ_G0018167) #24	MGP_PahariEiJ_G0018166	Cbx1 (MGP_PahariEiJ_G0018165) #25	Snx11 (MGP_PahariEiJ_G0018164) #26	Skap1 (MGP_PahariEiJ_G0018163) #27	Hoxb1 (MGP_PahariEiJ_G0018162) #28	Hoxb2 (MGP_PahariEiJ_G0018161) #29	Hoxb3 (MGP_PahariEiJ_G0018160) #31	Hoxb4 (MGP_PahariEiJ_G0018159) #30	Hoxb5 (MGP_PahariEiJ_G0018158) #32	Hoxb6 (MGP_PahariEiJ_G0018157) #33	Hoxb7 (MGP_PahariEiJ_G0018156) #34	Hoxb8 (MGP_PahariEiJ_G0018155) #35	Hoxb9 (MGP_PahariEiJ_G0018154) #36
Rat	MODERN SPECIES	1	Gpr179 (ENSRNOG00000029245)	Mrpl45 (ENSRNOG00000010540)	Npepps (ENSRNOG00000023095)	AABR07030425.1 (ENSRNOG00000056057)	Kpnb1 (ENSRNOG00000009275)	Tbkbp1 (ENSRNOG00000009370)	Tbx21 (ENSRNOG00000009427)	Osbpl7 (ENSRNOG00000009473) #14	Mrpl10 (ENSRNOG00000009567) #15	Lrrc46 (ENSRNOG00000009902) #16	Scrn2 (ENSRNOG00000010214) #17	Sp6 (ENSRNOG00000023551) #18	Sp2 (ENSRNOG00000010492) #19	Pnpo (ENSRNOG00000046493) #20	Prr15l (ENSRNOG00000049162) #21	Cdk5rap3 (ENSRNOG00000048747) #22	Copz2 (ENSRNOG00000009225) #23	Nfe2l1 (ENSRNOG00000008830) #24	Cbx1 (ENSRNOG00000008689) #25	Snx11 (ENSRNOG00000008642) #26	Skap1 (ENSRNOG00000023881) #27	Hoxb1 (ENSRNOG00000008506) #28	Hoxb2 (ENSRNOG00000008365) #29	Hoxb3 (ENSRNOG00000008313) #31	Hoxb4 (ENSRNOG00000008191) #30	Hoxb5 (ENSRNOG00000008010) #32	Hoxb6 (ENSRNOG00000007823) #33	Hoxb7 (ENSRNOG00000007611) #34	Hoxb8 (ENSRNOG00000007585) #35	Hoxb9 (ENSRNOG00000007573) #36	Hoxb13 (ENSRNOG00000007491)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Map3k14 (ENSNGAG00000018057)	Arhgap27 (ENSNGAG00000021239)	Plekhm1 (ENSNGAG00000013194)	Kpnb1 (ENSNGAG00000017610)	Tbkbp1 (ENSNGAG00000021163)	Tbx21 (ENSNGAG00000002476)	Osbpl7 (ENSNGAG00000019382) #14	Mrpl10 (ENSNGAG00000022195) #15	Lrrc46 (ENSNGAG00000022557) #16	Scrn2 (ENSNGAG00000023806) #17	Sp6 (ENSNGAG00000015868) #18	Sp2 (ENSNGAG00000017612) #19	Pnpo (ENSNGAG00000020016) #20	Prr15l (ENSNGAG00000021432) #21	ENSNGAG00000022529	ENSNGAG00000000747 #22	Copz2 (ENSNGAG00000023713) #23	Nfe2l1 (ENSNGAG00000000736) #24	Cbx1 (ENSNGAG00000006760) #25	Snx11 (ENSNGAG00000010446) #26	Skap1 (ENSNGAG00000012571) #27	Hoxb1 (ENSNGAG00000018593) #28	Hoxb2 (ENSNGAG00000019089) #29	Hoxb3 (ENSNGAG00000020227) #31	Hoxb4 (ENSNGAG00000021768) #30	Hoxb5 (ENSNGAG00000023238) #32	Hoxb6 (ENSNGAG00000000973) #33	Hoxb7 (ENSNGAG00000010205) #34	Hoxb8 (ENSNGAG00000010647) #35	Hoxb9 (ENSNGAG00000010851) #36	Hoxb13 (ENSNGAG00000011053)
Lesser Egyptian jerboa	MODERN SPECIES	56	Socs7 (ENSJJAG00000007563)	ENSJJAG00000002004	ENSJJAG00000009505	Npepps (ENSJJAG00000005423)	Kpnb1 (ENSJJAG00000010909)	ENSJJAG00000010141	Tbx21 (ENSJJAG00000000813)	Osbpl7 (ENSJJAG00000004477) #14	Mrpl10 (ENSJJAG00000004046) #15	Lrrc46 (ENSJJAG00000010412) #16	Scrn2 (ENSJJAG00000023635) #17	Sp6 (ENSJJAG00000006452) #18	Sp2 (ENSJJAG00000003061) #19	Pnpo (ENSJJAG00000023608) #20	Prr15l (ENSJJAG00000006478) #21	ENSJJAG00000002511 #22	Copz2 (ENSJJAG00000001025) #23	Nfe2l1 (ENSJJAG00000006432) #24	ENSJJAG00000007753 #25	ENSJJAG00000005754 #26	Skap1 (ENSJJAG00000003458) #27	Hoxb1 (ENSJJAG00000001073) #28	Hoxb2 (ENSJJAG00000009465) #29	Hoxb3 (ENSJJAG00000007804) #31	Hoxb4 (ENSJJAG00000002642) #30	Hoxb5 (ENSJJAG00000000763) #32	Hoxb6 (ENSJJAG00000000997) #33	Hoxb7 (ENSJJAG00000001284) #34	Hoxb8 (ENSJJAG00000002398) #35	Hoxb9 (ENSJJAG00000009821) #36	Hoxb13 (ENSJJAG00000010401)
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00950000185410	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000000713 #22
Hedgehog	MODERN SPECIES	1131																CDK5RAP3 (ENSEEUG00000015138) #22
Common shrew	MODERN SPECIES	4826															SP2 (ENSSARG00000003559) #19	CDK5RAP3 (ENSSARG00000003586) #22
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000185410	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000185410	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Microchiroptera	ANCESTRAL SPECIES		ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Greater horseshoe bat	MODERN SPECIES	13	SOCS7 (ENSRFEG00010008940)	GPR179 (ENSRFEG00010008688)	MRPL45 (ENSRFEG00010008623)	NPEPPS (ENSRFEG00010008553)	KPNB1 (ENSRFEG00010008460)	TBKBP1 (ENSRFEG00010008412)	TBX21 (ENSRFEG00010008382)	OSBPL7 (ENSRFEG00010008272) #14	MRPL10 (ENSRFEG00010008230) #15	LRRC46 (ENSRFEG00010008197) #16	SCRN2 (ENSRFEG00010021961) #17	SP6 (ENSRFEG00010021957) #18	SP2 (ENSRFEG00010021950) #19	PNPO (ENSRFEG00010021942) #20	PRR15L (ENSRFEG00010021936) #21	CDK5RAP3 (ENSRFEG00010021928) #22	COPZ2 (ENSRFEG00010021918) #23	NFE2L1 (ENSRFEG00010021900) #24	CBX1 (ENSRFEG00010021893) #25	SNX11 (ENSRFEG00010021879) #26	SKAP1 (ENSRFEG00010021866) #27	HOXB1 (ENSRFEG00010021864) #28	HOXB2 (ENSRFEG00010021859) #29	HOXB3 (ENSRFEG00010021853) #31	ENSRFEG00010021849	HOXB4 (ENSRFEG00010021844) #30	HOXB5 (ENSRFEG00010021836) #32	HOXB6 (ENSRFEG00010021831) #33	HOXB7 (ENSRFEG00010021823) #34	HOXB8 (ENSRFEG00010021818) #35	HOXB9 (ENSRFEG00010021814) #36
Microbat	MODERN SPECIES	1191		SOCS7 (ENSMLUG00000002876)	GPR179 (ENSMLUG00000002866)	MRPL45 (ENSMLUG00000002863)	NPEPPS (ENSMLUG00000013342)	KPNB1 (ENSMLUG00000014522)	TBKBP1 (ENSMLUG00000014537)	TBX21 (ENSMLUG00000014542)	OSBPL7 (ENSMLUG00000006392) #14	MRPL10 (ENSMLUG00000006405) #15	LRRC46 (ENSMLUG00000006409) #16	SCRN2 (ENSMLUG00000006417) #17	SP2 (ENSMLUG00000005000) #19	PNPO (ENSMLUG00000005003) #20	PRR15L (ENSMLUG00000005012) #21	CDK5RAP3 (ENSMLUG00000005014) #22	NFE2L1 (ENSMLUG00000005024) #24	CBX1 (ENSMLUG00000005030) #25	SNX11 (ENSMLUG00000005033) #26	SKAP1 (ENSMLUG00000005037) #27	HOXB1 (ENSMLUG00000008429) #28	HOXB3 (ENSMLUG00000008445) #31	ENSMLUG00000027291	ENSMLUG00000014513 #32	HOXB6 (ENSMLUG00000010649) #33	HOXB7 (ENSMLUG00000002609) #34	HOXB9 (ENSMLUG00000011677) #36	ENSMLUG00000029480	TTLL6 (ENSMLUG00000014065)	CALCOCO2 (ENSMLUG00000014073)	ENSMLUG00000011738
Megabat	MODERN SPECIES	2332									OSBPL7 (ENSPVAG00000004250) #14	MRPL10 (ENSPVAG00000004251) #15	LRRC46 (ENSPVAG00000004252) #16	SCRN2 (ENSPVAG00000004253) #17	SP6 (ENSPVAG00000004254) #18	SP2 (ENSPVAG00000004255) #19	PNPO (ENSPVAG00000004256) #20	CDK5RAP3 (ENSPVAG00000004258) #22	COPZ2 (ENSPVAG00000004259) #23
Equus	ANCESTRAL SPECIES		ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Donkey	MODERN SPECIES	4	SOCS7 (ENSEASG00005001492)	ENSEASG00005001474	ENSEASG00005001461	ENSEASG00005000896	KPNB1 (ENSEASG00005000805)	TBKBP1 (ENSEASG00005000756)	TBX21 (ENSEASG00005000739)	OSBPL7 (ENSEASG00005000733) #14	MRPL10 (ENSEASG00005027403) #15	LRRC46 (ENSEASG00005000676) #16	SCRN2 (ENSEASG00005000671) #17	SP6 (ENSEASG00005036407) #18	SP2 (ENSEASG00005000667) #19	PNPO (ENSEASG00005028794) #20	PRR15L (ENSEASG00005000660) #21	CDK5RAP3 (ENSEASG00005000658) #22	COPZ2 (ENSEASG00005000641) #23	NFE2L1 (ENSEASG00005000634) #24	CBX1 (ENSEASG00005000607) #25	SNX11 (ENSEASG00005000605) #26	SKAP1 (ENSEASG00005000601) #27	HOXB1 (ENSEASG00005000594) #28	HOXB2 (ENSEASG00005000585) #29	HOXB3 (ENSEASG00005000581) #31	HOXB6 (ENSEASG00005000560) #33	HOXB5 (ENSEASG00005000563) #32	HOXB7 (ENSEASG00005000556) #34	HOXB8 (ENSEASG00005024978) #35	HOXB9 (ENSEASG00005000527) #36	HOXB13 (ENSEASG00005025083)	ENSEASG00005000438
Horse	MODERN SPECIES	2	ARHGAP23 (ENSECAG00000031942)	SOCS7 (ENSECAG00000021699)	GPR179 (ENSECAG00000021843)	MRPL45 (ENSECAG00000000590)	NPEPPS (ENSECAG00000007392)	KPNB1 (ENSECAG00000014560)	TBKBP1 (ENSECAG00000016107)	TBX21 (ENSECAG00000018160)	OSBPL7 (ENSECAG00000019067) #14	LRRC46 (ENSECAG00000007543) #16	SCRN2 (ENSECAG00000009826) #17	SP6 (ENSECAG00000012853) #18	SP2 (ENSECAG00000012859) #19	PNPO (ENSECAG00000014995) #20	PRR15L (ENSECAG00000002658) #21	CDK5RAP3 (ENSECAG00000018688) #22	COPZ2 (ENSECAG00000024471) #23	NFE2L1 (ENSECAG00000007777) #24	CBX1 (ENSECAG00000008048) #25	SNX11 (ENSECAG00000008117) #26	SKAP1 (ENSECAG00000010544) #27	HOXB1 (ENSECAG00000011628) #28	HOXB2 (ENSECAG00000012423) #29	HOXB3 (ENSECAG00000002707) #31	HOXB4 (ENSECAG00000028576) #30	HOXB5 (ENSECAG00000012439) #32	HOXB8 (ENSECAG00000034473) #34	HOXB9 (ENSECAG00000036001) #36	HOXB13 (ENSECAG00000013619)	TTLL6 (ENSECAG00000014417)	ENSECAG00000059603
Carnivora	ANCESTRAL SPECIES	9	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000185410	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Felidae	ANCESTRAL SPECIES	8	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679.i	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000185410	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00390000013771.p	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35
Panthera	ANCESTRAL SPECIES	14	ENSGT00940000157982.b	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679.i.a.a	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00390000000713 #22	ENSGT00940000154534.a #21	ENSGT00390000004405.b #23	ENSGT00950000185410	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00390000013771.p	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679.i.b	ENSGT00390000012679.i.a.a	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00390000000713 #22	ENSGT00940000154534.a #21	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00390000013771.p	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35
lion	MODERN SPECIES	14	ARHGAP23 (ENSPLOG00000006163)	SOCS7 (ENSPLOG00000006096)	GPR179 (ENSPLOG00000006047)	MRPL45 (ENSPLOG00000006010)	NPEPPS (ENSPLOG00000005888)	KPNB1 (ENSPLOG00000005771)	TBKBP1 (ENSPLOG00000005658)	TBX21 (ENSPLOG00000005640)	OSBPL7 (ENSPLOG00000005563) #14	MRPL10 (ENSPLOG00000005459) #15	LRRC46 (ENSPLOG00000005433) #16	SCRN2 (ENSPLOG00000022130) #17	SP6 (ENSPLOG00000022115) #18	SP2 (ENSPLOG00000022101) #19	PRR15L (ENSPLOG00000022093) #21	CDK5RAP3 (ENSPLOG00000022033) #22	COPZ2 (ENSPLOG00000021972) #23	NFE2L1 (ENSPLOG00000021931) #24	CBX1 (ENSPLOG00000021907) #25	SNX11 (ENSPLOG00000021872) #26	SKAP1 (ENSPLOG00000021790) #27	ENSPLOG00000021761	HOXB1 (ENSPLOG00000021742) #28	HOXB2 (ENSPLOG00000021733) #29	HOXB3 (ENSPLOG00000021711) #31	HOXB4 (ENSPLOG00000021697) #30	HOXB5 (ENSPLOG00000021683) #32	HOXB6 (ENSPLOG00000021669) #33	HOXB7 (ENSPLOG00000021659) #34	HOXB8 (ENSPLOG00000021645) #35	HOXB9 (ENSPLOG00000021630) #36
leopard	MODERN SPECIES	67	ARHGAP23 (ENSPPRG00000012371)	SOCS7 (ENSPPRG00000012918)	GPR179 (ENSPPRG00000013909)	ENSPPRG00000014693	NPEPPS (ENSPPRG00000020677)	KPNB1 (ENSPPRG00000022879)	TBKBP1 (ENSPPRG00000000101)	TBX21 (ENSPPRG00000000491)	ENSPPRG00000001011 #14	MRPL10 (ENSPPRG00000001188) #15	LRRC46 (ENSPPRG00000001915) #16	SCRN2 (ENSPPRG00000002730) #17	SP6 (ENSPPRG00000016089) #18	SP2 (ENSPPRG00000003332) #19	PNPO (ENSPPRG00000005037) #20	CDK5RAP3 (ENSPPRG00000006376) #22	COPZ2 (ENSPPRG00000006801) #23	NFE2L1 (ENSPPRG00000009101) #24	CBX1 (ENSPPRG00000009475) #25	SNX11 (ENSPPRG00000012061) #26	SKAP1 (ENSPPRG00000015336) #27	ENSPPRG00000016613	ENSPPRG00000017115	HOXB1 (ENSPPRG00000017656) #28	HOXB2 (ENSPPRG00000020926) #29	HOXB3 (ENSPPRG00000022415) #31	HOXB4 (ENSPPRG00000000220) #30	HOXB5 (ENSPPRG00000000333) #32	HOXB6 (ENSPPRG00000000532) #33	HOXB7 (ENSPPRG00000000666) #34	HOXB8 (ENSPPRG00000001156) #35
Tiger	MODERN SPECIES	230	MLLT6 (ENSPTIG00000007153)	SRCIN1 (ENSPTIG00000021759)	ARHGAP23 (ENSPTIG00000018889)	SOCS7 (ENSPTIG00000017283)	MRPL45 (ENSPTIG00000013013)	NPEPPS (ENSPTIG00000010447)	KPNB1 (ENSPTIG00000006870)	ENSPTIG00000005274	TBX21 (ENSPTIG00000001553)	ENSPTIG00000019388 #14	MRPL10 (ENSPTIG00000018968) #15	LRRC46 (ENSPTIG00000018466) #16	SCRN2 (ENSPTIG00000016232) #17	SP2 (ENSPTIG00000014873) #19	PNPO (ENSPTIG00000012157) #20	CDK5RAP3 (ENSPTIG00000009086) #22	COPZ2 (ENSPTIG00000007508) #23	ENSPTIG00000007047	NFE2L1 (ENSPTIG00000021715) #24	CBX1 (ENSPTIG00000020896) ##25	SNX11 (ENSPTIG00000018316) #26	SKAP1 (ENSPTIG00000016493) #27	HOXB1 (ENSPTIG00000015694) #28	HOXB2 (ENSPTIG00000015306) #29	HOXB4 (ENSPTIG00000014995) #30	HOXB5 (ENSPTIG00000014877) #32	HOXB7 (ENSPTIG00000014471) #34	ENSPTIG00000013326	TTLL6 (ENSPTIG00000010570)	CALCOCO2 (ENSPTIG00000020855)	ENSPTIG00000018508
Cat	MODERN SPECIES	245	SOCS7 (ENSFCAG00000005815)	GPR179 (ENSFCAG00000005812)	MRPL45 (ENSFCAG00000005808)	NPEPPS (ENSFCAG00000027844)	KPNB1 (ENSFCAG00000023994)	TBKBP1 (ENSFCAG00000010605)	TBX21 (ENSFCAG00000010607)	OSBPL7 (ENSFCAG00000009359) #14	MRPL10 (ENSFCAG00000009360) #15	LRRC46 (ENSFCAG00000045119) #16	SCRN2 (ENSFCAG00000009362) #17	SP6 (ENSFCAG00000009363) #18	SP2 (ENSFCAG00000009365) #19	PNPO (ENSFCAG00000001300) #20	PRR15L (ENSFCAG00000009366) #21	CDK5RAP3 (ENSFCAG00000009367) #22	COPZ2 (ENSFCAG00000034233) #23	NFE2L1 (ENSFCAG00000009369) #24	CBX1 (ENSFCAG00000006056) ##25	SNX11 (ENSFCAG00000009371) #26	SKAP1 (ENSFCAG00000004784) #27	ENSFCAG00000034133	HOXB1 (ENSFCAG00000028151) #28	HOXB2 (ENSFCAG00000045039) #29	HOXB3 (ENSFCAG00000006408) #31	HOXB4 (ENSFCAG00000051422) #30	HOXB5 (ENSFCAG00000039068) #32	HOXB6 (ENSFCAG00000034768) #33	HOXB7 (ENSFCAG00000002118) #34	HOXB8 (ENSFCAG00000036979) #35	HOXB9 (ENSFCAG00000035234) #36
Caniformia	ANCESTRAL SPECIES	6	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000185410	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Canidae	ANCESTRAL SPECIES	2	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Dog	MODERN SPECIES	37	GPR179 (ENSCAFG00845014777)	ENSCAFG00845014840	NPEPPS (ENSCAFG00845014931)	KPNB1 (ENSCAFG00845015226)	TBKBP1 (ENSCAFG00845015281)	TBX21 (ENSCAFG00845015330)	OSBPL7 (ENSCAFG00845015415) #14	MRPL10 (ENSCAFG00845015539) #15	LRRC46 (ENSCAFG00845015603) #16	SCRN2 (ENSCAFG00845015686) #17	SP6 (ENSCAFG00845015746) #18	SP2 (ENSCAFG00845015786) #19	PNPO (ENSCAFG00845015876) #20	PRR15L (ENSCAFG00845015978) #21	ENSCAFG00845016000	CDK5RAP3 (ENSCAFG00845016051) #22	COPZ2 (ENSCAFG00845016156) #23	NFE2L1 (ENSCAFG00845016388) #24	CBX1 (ENSCAFG00845016596) #25	SNX11 (ENSCAFG00845016720) #26	SKAP1 (ENSCAFG00845016959) #27	HOXB1 (ENSCAFG00845017096) #28	HOXB2 (ENSCAFG00845017142) #29	HOXB3 (ENSCAFG00845017188) #31	HOXB4 (ENSCAFG00845017264) #30	HOXB5 (ENSCAFG00845009832) #32	HOXB6 (ENSCAFG00845009871) #33	HOXB7 (ENSCAFG00845009899) #34	HOXB8 (ENSCAFG00845009931) #35	HOXB9 (ENSCAFG00845009956) #36	HOXB13 (ENSCAFG00845009992)
Dingo	MODERN SPECIES	150	GPR179 (ENSCAFG00020023180)	MRPL45 (ENSCAFG00020023186)	ENSCAFG00020023199	NPEPPS (ENSCAFG00020023203)	KPNB1 (ENSCAFG00020023205)	TBKBP1 (ENSCAFG00020023210)	TBX21 (ENSCAFG00020023221)	OSBPL7 (ENSCAFG00020023225) #14	MRPL10 (ENSCAFG00020023232) #15	LRRC46 (ENSCAFG00020023236) #16	SCRN2 (ENSCAFG00020023238) #17	SP6 (ENSCAFG00020023243) #18	SP2 (ENSCAFG00020023246) #19	PNPO (ENSCAFG00020023249) #20	PRR15L (ENSCAFG00020023256) #21	CDK5RAP3 (ENSCAFG00020023258) #22	COPZ2 (ENSCAFG00020023263) #23	NFE2L1 (ENSCAFG00020023270) #24	CBX1 (ENSCAFG00020023275) #25	SNX11 (ENSCAFG00020023282) #26	SKAP1 (ENSCAFG00020023287) #27	HOXB1 (ENSCAFG00020023290) #28	HOXB2 (ENSCAFG00020023293) #29	HOXB3 (ENSCAFG00020023294) #31	HOXB4 (ENSCAFG00020023297) #30	HOXB5 (ENSCAFG00020023301) #32	HOXB6 (ENSCAFG00020023302) #33	ENSCAFG00020023303 #34	HOXB8 (ENSCAFG00020023306) #35	HOXB9 (ENSCAFG00020023312) #36	HOXB13 (ENSCAFG00020023319)
Red fox	MODERN SPECIES	20	SOCS7 (ENSVVUG00000002941)	GPR179 (ENSVVUG00000002981)	MRPL45 (ENSVVUG00000003030)	NPEPPS (ENSVVUG00000003061)	KPNB1 (ENSVVUG00000003085)	ENSVVUG00000003100	TBX21 (ENSVVUG00000003106)	ENSVVUG00000003127 #14	MRPL10 (ENSVVUG00000003141) #15	LRRC46 (ENSVVUG00000003146) #16	SCRN2 (ENSVVUG00000003154) #17	SP6 (ENSVVUG00000003167) #18	SP2 (ENSVVUG00000003171) #19	PNPO (ENSVVUG00000003178) #20	PRR15L (ENSVVUG00000003218) #21	CDK5RAP3 (ENSVVUG00000003227) #22	COPZ2 (ENSVVUG00000003249) #23	NFE2L1 (ENSVVUG00000003262) #24	ENSVVUG00000003272 #25	SNX11 (ENSVVUG00000003276) #26	SKAP1 (ENSVVUG00000003297) #27	HOXB1 (ENSVVUG00000003325) #28	HOXB2 (ENSVVUG00000003328) #29	HOXB3 (ENSVVUG00000003329) #31	ENSVVUG00000003340 #30	HOXB5 (ENSVVUG00000003354) #32	HOXB6 (ENSVVUG00000003359) #33	HOXB7 (ENSVVUG00000003360) #34	HOXB8 (ENSVVUG00000003366) #35	HOXB9 (ENSVVUG00000003367) #36	HOXB13 (ENSVVUG00000003382)
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000185410	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000185410	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Ferret	MODERN SPECIES	270	MRPL45 (ENSMPUG00000015218)	NPEPPS (ENSMPUG00000015219)	KPNB1 (ENSMPUG00000015220)	TBKBP1 (ENSMPUG00000015271)	TBX21 (ENSMPUG00000015272)	ENSMPUG00000015273	ENSMPUG00000015275	OSBPL7 (ENSMPUG00000015276) #14	MRPL10 (ENSMPUG00000015278) #15	LRRC46 (ENSMPUG00000015287) #16	SCRN2 (ENSMPUG00000015288) #17	SP6 (ENSMPUG00000020086) #18	SP2 (ENSMPUG00000015289) #19	PNPO (ENSMPUG00000015290) #20	PRR15L (ENSMPUG00000020087) #21	CDK5RAP3 (ENSMPUG00000015291) #22	COPZ2 (ENSMPUG00000015292) #23	NFE2L1 (ENSMPUG00000015301) #24	CBX1 (ENSMPUG00000015302) ##25	SNX11 (ENSMPUG00000015303) #26	SKAP1 (ENSMPUG00000015305) #27	HOXB1 (ENSMPUG00000015307) #28	HOXB2 (ENSMPUG00000015309) #29	HOXB4 (ENSMPUG00000015310) #30	HOXB5 (ENSMPUG00000015316) #32	HOXB6 (ENSMPUG00000015322) #33	HOXB7 (ENSMPUG00000015328) #34	HOXB8 (ENSMPUG00000015329) #35	HOXB9 (ENSMPUG00000015330) #36	HOXB13 (ENSMPUG00000015332)	TTLL6 (ENSMPUG00000015335)
American mink	MODERN SPECIES	92	SOCS7 (ENSNVIG00000005194)	GPR179 (ENSNVIG00000005217)	MRPL45 (ENSNVIG00000005287)	NPEPPS (ENSNVIG00000005313)	KPNB1 (ENSNVIG00000005359)	ENSNVIG00000005426	TBX21 (ENSNVIG00000005442)	OSBPL7 (ENSNVIG00000005460) #14	RM10 (ENSNVIG00000005608) #15	LRRC46 (ENSNVIG00000005619) #16	SCRN2 (ENSNVIG00000005641) #17	SP6 (ENSNVIG00000005667) #18	SP2 (ENSNVIG00000005673) #19	PNPO (ENSNVIG00000005692) #20	PR15L (ENSNVIG00000005731) #21	CDK5RAP3 (ENSNVIG00000005742) #22	COPZ2 (ENSNVIG00000005837) #23	ENSNVIG00000005842	NFE2L1 (ENSNVIG00000005857) #24	CBX1 (ENSNVIG00000005946) #25	SNX11 (ENSNVIG00000005959) #26	SKAP1 (ENSNVIG00000005974) #27	ENSNVIG00000006009	HOXB1 (ENSNVIG00000006017) #28	HOXB2 (ENSNVIG00000006024) #29	HOXB3 (ENSNVIG00000006032) #31	HOXB4 (ENSNVIG00000006040) #30	HOXB5 (ENSNVIG00000006049) #32	HOXB6 (ENSNVIG00000006053) #33	HOXB7 (ENSNVIG00000006060) #34	HOXB8 (ENSNVIG00000006066) #35
Ursidae	ANCESTRAL SPECIES	18	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000185410	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Giant Panda	MODERN SPECIES	4	ARHGAP23 (ENSAMEG00000024032)	SOCS7 (ENSAMEG00000004494)	ENSAMEG00000029558	ENSAMEG00000004511	ENSAMEG00000004523	KPNB1 (ENSAMEG00000004613)	TBKBP1 (ENSAMEG00000004659)	TBX21 (ENSAMEG00000004661)	OSBPL7 (ENSAMEG00000004670) #14	MRPL10 (ENSAMEG00000004722) #15	LRRC46 (ENSAMEG00000004734) #16	SCRN2 (ENSAMEG00000004751) #17	SP2 (ENSAMEG00000004772) #19	PNPO (ENSAMEG00000004786) #20	PRR15L (ENSAMEG00000025744) #21	CDK5RAP3 (ENSAMEG00000004818) #22	ENSAMEG00000030152	COPZ2 (ENSAMEG00000004850) #23	NFE2L1 (ENSAMEG00000004881) #24	CBX1 (ENSAMEG00000004890) #25	SNX11 (ENSAMEG00000004898) #26	SKAP1 (ENSAMEG00000004919) #27	HOXB1 (ENSAMEG00000004935) #28	HOXB2 (ENSAMEG00000030987) #29	HOXB3 (ENSAMEG00000027375) #31	HOXB4 (ENSAMEG00000028329) #30	HOXB5 (ENSAMEG00000004967) #32	HOXB6 (ENSAMEG00000004971) #33	HOXB7 (ENSAMEG00000004977) #34	ENSAMEG00000004982 #35	HOXB9 (ENSAMEG00000024921) #36
Ursus	ANCESTRAL SPECIES	67	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000005809.c.b	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000185410	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
American black bear	MODERN SPECIES	1414									MRPL10 (ENSUAMG00000017142) #15	LRRC46 (ENSUAMG00000017138) #16	SCRN2 (ENSUAMG00000017135) #17	SP6 (ENSUAMG00000017132) #18	SP2 (ENSUAMG00000017127) #19	PNPO (ENSUAMG00000017122) #20	PRR15L (ENSUAMG00000017119) #21	CDK5RAP3 (ENSUAMG00000017117) #22	COPZ2 (ENSUAMG00000017115) #23	ENSUAMG00000017113	NFE2L1 (ENSUAMG00000017111) #24	CBX1 (ENSUAMG00000017105) #25	SNX11 (ENSUAMG00000017102) #26
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	94	SOCS7 (ENSUMAG00000016879)	ENSUMAG00000016874	MRPL45 (ENSUMAG00000016869)	NPEPPS (ENSUMAG00000016765)	ENSUMAG00000016745	KPNB1 (ENSUMAG00000016471)	ENSUMAG00000016425	ENSUMAG00000016418	OSBPL7 (ENSUMAG00000016080) #14	MRPL10 (ENSUMAG00000016024) #15	LRRC46 (ENSUMAG00000016015) #16	SCRN2 (ENSUMAG00000016006) #17	SP2 (ENSUMAG00000015996) #19	PNPO (ENSUMAG00000015992) #20	PRR15L (ENSUMAG00000015982) #21	ENSUMAG00000015972 #22	ENSUMAG00000015965 #22	ENSUMAG00000015942 #23	NFE2L1 (ENSUMAG00000015890) #24	CBX1 (ENSUMAG00000015878) #25	SNX11 (ENSUMAG00000015873) #26	SKAP1 (ENSUMAG00000015835) #27	HOXB1 (ENSUMAG00000015821) #28	HOXB5 (ENSUMAG00000015806) #32	HOXB7 (ENSUMAG00000015795) #34	ENSUMAG00000015785 #35	TTLL6 (ENSUMAG00000015764)	CALCOCO2 (ENSUMAG00000015754)	ENSUMAG00000015743	UBE2Z (ENSUMAG00000015734)	SNF8 (ENSUMAG00000015717)
Polar bear	MODERN SPECIES	94	ENSUMAG00000016874	MRPL45 (ENSUMAG00000016869)	NPEPPS (ENSUMAG00000016765)	ENSUMAG00000016745	KPNB1 (ENSUMAG00000016471)	ENSUMAG00000016425	ENSUMAG00000016418	OSBPL7 (ENSUMAG00000016080) #14	MRPL10 (ENSUMAG00000016024) #15	LRRC46 (ENSUMAG00000016015) #16	SCRN2 (ENSUMAG00000016006) #17	SP2 (ENSUMAG00000015996) #19	PNPO (ENSUMAG00000015992) #20	PRR15L (ENSUMAG00000015982) #21	ENSUMAG00000015972 #22	ENSUMAG00000015965 #22	ENSUMAG00000015942 #23	NFE2L1 (ENSUMAG00000015890) #24	CBX1 (ENSUMAG00000015878) #25	SNX11 (ENSUMAG00000015873) #26	SKAP1 (ENSUMAG00000015835) #27	HOXB1 (ENSUMAG00000015821) #28	HOXB5 (ENSUMAG00000015806) #32	HOXB7 (ENSUMAG00000015795) #34	ENSUMAG00000015785 #35	TTLL6 (ENSUMAG00000015764)	CALCOCO2 (ENSUMAG00000015754)	ENSUMAG00000015743	UBE2Z (ENSUMAG00000015734)	SNF8 (ENSUMAG00000015717)	GIP (ENSUMAG00000015711)
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000185410	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000185410	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00950000185410	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35
Cetacea	ANCESTRAL SPECIES	5	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Odontoceti	ANCESTRAL SPECIES	16	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Odontoceti_a	ANCESTRAL SPECIES	14	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Vaquita	MODERN SPECIES	12	SOCS7 (ENSPSNG00000019467)	GPR179 (ENSPSNG00000019300)	MRPL45 (ENSPSNG00000019227)	NPEPPS (ENSPSNG00000019016)	KPNB1 (ENSPSNG00000018946)	TBKBP1 (ENSPSNG00000018911)	TBX21 (ENSPSNG00000018852)	OSBPL7 (ENSPSNG00000018799) #14	ENSPSNG00000018757	LRRC46 (ENSPSNG00000018676) #16	SCRN2 (ENSPSNG00000018588) #17	SP6 (ENSPSNG00000018568) #18	SP2 (ENSPSNG00000018528) #19	PNPO (ENSPSNG00000018423) #20	PRR15L (ENSPSNG00000018399) #21	CDK5RAP3 (ENSPSNG00000018321) #22	COPZ2 (ENSPSNG00000018262) #23	NFE2L1 (ENSPSNG00000018052) #24	ENSPSNG00000017984 #25	SNX11 (ENSPSNG00000017889) #26	SKAP1 (ENSPSNG00000017760) #27	HOXB1 (ENSPSNG00000017728) #28	HOXB2 (ENSPSNG00000017708) #29	HOXB3 (ENSPSNG00000017636) #31	HOXB4 (ENSPSNG00000017604) #30	HOXB5 (ENSPSNG00000017559) #32	HOXB6 (ENSPSNG00000017525) #33	HOXB7 (ENSPSNG00000017482) #34	HOXB8 (ENSPSNG00000017436) #35	HOXB9 (ENSPSNG00000017398) #36	HOXB13 (ENSPSNG00000017233)
Monodontidae	ANCESTRAL SPECIES	16	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Beluga whale	MODERN SPECIES	26	SOCS7 (ENSDLEG00000004014)	GPR179 (ENSDLEG00000004032)	MRPL45 (ENSDLEG00000004037)	NPEPPS (ENSDLEG00000004076)	KPNB1 (ENSDLEG00000004223)	TBKBP1 (ENSDLEG00000004240)	TBX21 (ENSDLEG00000004247)	OSBPL7 (ENSDLEG00000004366) #14	MRPL10 (ENSDLEG00000004678) #15	ENSDLEG00000004684	SCRN2 (ENSDLEG00000004688) #17	SP6 (ENSDLEG00000004694) #18	SP2 (ENSDLEG00000004697) #19	PNPO (ENSDLEG00000004701) #20	PRR15L (ENSDLEG00000004704) #21	CDK5RAP3 (ENSDLEG00000004709) #22	COPZ2 (ENSDLEG00000004721) #23	ENSDLEG00000004734	NFE2L1 (ENSDLEG00000004744) #24	CBX1 (ENSDLEG00000004754) ##25	SNX11 (ENSDLEG00000004765) #26	SKAP1 (ENSDLEG00000004779) #27	HOXB1 (ENSDLEG00000004807) #28	HOXB2 (ENSDLEG00000004813) #29	HOXB3 (ENSDLEG00000004817) #31	HOXB4 (ENSDLEG00000004820) #30	HOXB5 (ENSDLEG00000004826) #32	HOXB6 (ENSDLEG00000004829) #33	HOXB7 (ENSDLEG00000004834) #34	HOXB8 (ENSDLEG00000004837) #35	HOXB9 (ENSDLEG00000004838) #36
Narwhal	MODERN SPECIES	316	SOCS7 (ENSMMNG00015017571)	GPR179 (ENSMMNG00015017480)	MRPL45 (ENSMMNG00015017435)	NPEPPS (ENSMMNG00015017277)	KPNB1 (ENSMMNG00015017215)	TBKBP1 (ENSMMNG00015017190)	TBX21 (ENSMMNG00015017166)	OSBPL7 (ENSMMNG00015017115) #14	MRPL10 (ENSMMNG00015017084) #15	LRRC46 (ENSMMNG00015017038) #16	SCRN2 (ENSMMNG00015016985) #17	SP6 (ENSMMNG00015016969) #18	SP2 (ENSMMNG00015016948) #19	PNPO (ENSMMNG00015016895) #20	PRR15L (ENSMMNG00015016868) #21	CDK5RAP3 (ENSMMNG00015016820) #22	COPZ2 (ENSMMNG00015016743) #23	NFE2L1 (ENSMMNG00015016634) #24	CBX1 (ENSMMNG00015016582) #25	SNX11 (ENSMMNG00015016452) #26	SKAP1 (ENSMMNG00015016386) #27	HOXB1 (ENSMMNG00015016356) #28	HOXB2 (ENSMMNG00015016324) #29	HOXB3 (ENSMMNG00015016287) #31	HOXB4 (ENSMMNG00015016252) #30	HOXB5 (ENSMMNG00015016235) #32	HOXB6 (ENSMMNG00015016215) #33	HOXB7 (ENSMMNG00015016197) #34	HOXB8 (ENSMMNG00015016175) #35	HOXB9 (ENSMMNG00015016160) #36	HOXB13 (ENSMMNG00015016080)
Dolphin	MODERN SPECIES	3359																CDK5RAP3 (ENSTTRG00000016552) #22	COPZ2 (ENSTTRG00000016553) #23	NFE2L1 (ENSTTRG00000016554) #24	SNX11 (ENSTTRG00000016555) #26	SKAP1 (ENSTTRG00000016556) #27
Sperm whale	MODERN SPECIES	105														PNPO (ENSPCTG00005022654) #20	PRR15L (ENSPCTG00005022655) #21	CDK5RAP3 (ENSPCTG00005022656) #22	COPZ2 (ENSPCTG00005022657) #23	NFE2L1 (ENSPCTG00005022659) #24
Blue whale	MODERN SPECIES	12	COX11 (ENSBMSG00010019249)	ENSBMSG00010019021	KIF2B (ENSBMSG00010018945)	ENSBMSG00010018906	CA10 (ENSBMSG00010018845)	ENSBMSG00010018791	ENSBMSG00010018759	ENSBMSG00010018708	ENSBMSG00010018688	ENSBMSG00010018673	ENSBMSG00010018650	SP6 (ENSBMSG00010018628) #18	SP2 (ENSBMSG00010018607) #19	PNPO (ENSBMSG00010018544) #20	PRR15L (ENSBMSG00010018513) #21	CDK5RAP3 (ENSBMSG00010018481) #22	COPZ2 (ENSBMSG00010018306) #23	NFE2L1 (ENSBMSG00010018163) #24	CBX1 (ENSBMSG00010018099) #25	SNX11 (ENSBMSG00010018006) #26	SKAP1 (ENSBMSG00010017921) #27	HOXB1 (ENSBMSG00010017892) #28	HOXB2 (ENSBMSG00010017860) #29	HOXB3 (ENSBMSG00010017838) #31	HOXB4 (ENSBMSG00010017814) #30	HOXB5 (ENSBMSG00010017772) #32	HOXB6 (ENSBMSG00010017746) #33	HOXB7 (ENSBMSG00010017724) #34	HOXB8 (ENSBMSG00010017685) #35	HOXB9 (ENSBMSG00010017655) #36	HOXB13 (ENSBMSG00010017547)
Pecora	ANCESTRAL SPECIES	1	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00950000185410	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35
Yarkand deer	MODERN SPECIES	28	GPR179 (ENSCHYG00000000586)	MRPL45 (ENSCHYG00000000557)	NPEPPS (ENSCHYG00000000456)	ENSCHYG00000000411	KPNB1 (ENSCHYG00000000360)	TBKBP1 (ENSCHYG00000000333)	TBX21 (ENSCHYG00000000318)	OSBPL7 (ENSCHYG00000000286) #14	MRPL10 (ENSCHYG00000000265) #15	LRRC46 (ENSCHYG00000000251) #16	SCRN2 (ENSCHYG00000000227) #17	SP6 (ENSCHYG00000000221) #18	SP2 (ENSCHYG00000000198) #19	PNPO (ENSCHYG00000000157) #20	PRR15L (ENSCHYG00000000125) #21	CDK5RAP3 (ENSCHYG00000000101) #22	ENSCHYG00000004851	COPZ2 (ENSCHYG00000004829) #23	NFE2L1 (ENSCHYG00000004781) #24	CBX1 (ENSCHYG00000004750) #25	SNX11 (ENSCHYG00000004737) #26	ENSCHYG00000004720	SKAP1 (ENSCHYG00000004692) #27	HOXB1 (ENSCHYG00000004684) #28	HOXB2 (ENSCHYG00000004674) #29	HOXB3 (ENSCHYG00000004670) #31	HOXB4 (ENSCHYG00000004668) #30	HOXB5 (ENSCHYG00000004658) #32	HOXB6 (ENSCHYG00000004651) #33	HOXB7 (ENSCHYG00000004645) #34	HOXB8 (ENSCHYG00000004637) #35
Percora_a	ANCESTRAL SPECIES	2	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00980000199681	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Bovidae	ANCESTRAL SPECIES	2	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Caprinae	ANCESTRAL SPECIES	1	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000154688.b.j	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Rambouillet Sheep	MODERN SPECIES	2	SOCS7 (ENSOARG00020019553)	GPR179 (ENSOARG00020019685)	MRPL45 (ENSOARG00020019879)	NPEPPS (ENSOARG00020020009)	KPNB1 (ENSOARG00020020287)	TBKBP1 (ENSOARG00020020372)	TBX21 (ENSOARG00020020433)	OSBPL7 (ENSOARG00020020494) #14	MRPL10 (ENSOARG00020020614) #15	LRRC46 (ENSOARG00020020663) #16	SCRN2 (ENSOARG00020020770) #17	SP6 (ENSOARG00020020944) #18	SP2 (ENSOARG00020020972) #19	PNPO (ENSOARG00020021017) #20	PRR15L (ENSOARG00020021319) #21	CDK5RAP3 (ENSOARG00020021339) #22	COPZ2 (ENSOARG00020021377) #23	NFE2L1 (ENSOARG00020021460) #24	CBX1 (ENSOARG00020021741) #25	SNX11 (ENSOARG00020021783) #26	SKAP1 (ENSOARG00020021817) #27	HOXB1 (ENSOARG00020021886) #28	HOXB2 (ENSOARG00020021907) #29	HOXB3 (ENSOARG00020021943) #31	HOXB4 (ENSOARG00020021954) #30	HOXB5 (ENSOARG00020022004) #32	HOXB6 (ENSOARG00020022021) #33	HOXB7 (ENSOARG00020022042) #34	HOXB8 (ENSOARG00020022064) #35	HOXB9 (ENSOARG00020022138) #36	HOXB13 (ENSOARG00020022195)
Goat	MODERN SPECIES	10	SOCS7 (ENSCHIG00000012449)	GPR179 (ENSCHIG00000026098)	MRPL45 (ENSCHIG00000014110)	NPEPPS (ENSCHIG00000022782)	KPNB1 (ENSCHIG00000014896)	TBKBP1 (ENSCHIG00000016860)	TBX21 (ENSCHIG00000021993)	OSBPL7 (ENSCHIG00000023060) #14	MRPL10 (ENSCHIG00000027033) #15	LRRC46 (ENSCHIG00000015497) #16	SCRN2 (ENSCHIG00000026802) #17	SP6 (ENSCHIG00000009897) #18	SP2 (ENSCHIG00000018648) #19	PNPO (ENSCHIG00000004606) #20	PRR15L (ENSCHIG00000008261) #21	CDK5RAP3 (ENSCHIG00000025420) #22	COPZ2 (ENSCHIG00000026544) #23	NFE2L1 (ENSCHIG00000015427) #24	CBX1 (ENSCHIG00000010985) #25	SNX11 (ENSCHIG00000017547) #26	ENSCHIG00000026878 #27	ENSCHIG00000015920 #27	ENSCHIG00000010180	HOXB1 (ENSCHIG00000017872) #28	HOXB2 (ENSCHIG00000025836) #29	HOXB3 (ENSCHIG00000013978) #31	HOXB4 (ENSCHIG00000025323) #30	HOXB5 (ENSCHIG00000023147) #32	HOXB6 (ENSCHIG00000008881) #33	HOXB7 (ENSCHIG00000017532) #34	HOXB8 (ENSCHIG00000015504) #35
Bovinae	ANCESTRAL SPECIES		ENSGT00940000160776	ENSGT00390000012679	ENSGT00960000190232	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Bos	ANCESTRAL SPECIES	1	ENSGT00940000160776	ENSGT00960000190232	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590.e.b #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.i #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000154688.b.k.a	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Bos_a	ANCESTRAL SPECIES		ENSGT00940000160776	ENSGT00960000190232	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590.e.b #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.i #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000154688.b.k.a	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Wild yak	MODERN SPECIES	319													SP2 (ENSBMUG00000001179) #19	PNPO (ENSBMUG00000001160) #20	ENSBMUG00000001125 #21	CDK5RAP3 (ENSBMUG00000001110) #22	COPZ2 (ENSBMUG00000001081) #23	NFE2L1 (ENSBMUG00000001054) #24	CBX1 (ENSBMUG00000000974) #25	SNX11 (ENSBMUG00000000953) #26	SKAP1 (ENSBMUG00000000925) #27	ENSBMUG00000000901	HOXB1 (ENSBMUG00000000891) #28	HOXB2 (ENSBMUG00000000885) #29	HOXB3 (ENSBMUG00000000876) #31	HOXB4 (ENSBMUG00000000867) #30	HOXB5 (ENSBMUG00000000849) #32	HOXB6 (ENSBMUG00000000839) #33	HOXB7 (ENSBMUG00000000832) #34	HOXB8 (ENSBMUG00000000824) #35	HOXB9 (ENSBMUG00000000804) #36
Domestic yak	MODERN SPECIES	10	ENSBGRG00000017816	MRPL45 (ENSBGRG00000017975)	ENSBGRG00000018222	NPEPPS (ENSBGRG00000018276)	KPNB1 (ENSBGRG00000018571)	TBKBP1 (ENSBGRG00000019067)	TBX21 (ENSBGRG00000019171)	OSBPL7 (ENSBGRG00000019260) #14	MRPL10 (ENSBGRG00000019422) #15	LRRC46 (ENSBGRG00000019490) #16	SCRN2 (ENSBGRG00000019672) #17	SP6 (ENSBGRG00000019744) #18	ENSBGRG00000019774 #19	PNPO (ENSBGRG00000019898) #20	ENSBGRG00000020194 #21	CDK5RAP3 (ENSBGRG00000020283) #22	COPZ2 (ENSBGRG00000020574) #23	NFE2L1 (ENSBGRG00000020783) #24	CBX1 (ENSBGRG00000021062) #25	SNX11 (ENSBGRG00000021141) #26	SKAP1 (ENSBGRG00000021202) #27	HOXB1 (ENSBGRG00000021404) #28	HOXB2 (ENSBGRG00000021425) #29	HOXB3 (ENSBGRG00000021464) #31	HOXB4 (ENSBGRG00000021501) #30	HOXB5 (ENSBGRG00000021555) #32	HOXB6 (ENSBGRG00000021579) #33	HOXB8 (ENSBGRG00000021618) #35	HOXB9 (ENSBGRG00000021683) #36	HOXB13 (ENSBGRG00000021718)	TTLL6 (ENSBGRG00000021744)
Bos_b	ANCESTRAL SPECIES	15	ENSGT00940000160776	ENSGT00960000190232	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590.e.b #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b.i #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000154688.b.k.a	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Cow	MODERN SPECIES	10	GPR179 (ENSBTAG00000001804)	ENSBTAG00000049522	MRPL45 (ENSBTAG00000025001)	NPEPPS (ENSBTAG00000011435)	KPNB1 (ENSBTAG00000006586)	TBKBP1 (ENSBTAG00000011280)	TBX21 (ENSBTAG00000014199)	OSBPL7 (ENSBTAG00000013523) #14	MRPL10 (ENSBTAG00000001832) #15	LRRC46 (ENSBTAG00000001830) #16	SCRN2 (ENSBTAG00000001828) #17	SP6 (ENSBTAG00000001825) #18	SP2 (ENSBTAG00000013740) #19	PNPO (ENSBTAG00000012259) #20	PRR15L (ENSBTAG00000012249) #21	CDK5RAP3 (ENSBTAG00000014202) #22	COPZ2 (ENSBTAG00000039954) #23	NFE2L1 (ENSBTAG00000013653) #24	CBX1 (ENSBTAG00000002949) #25	SNX11 (ENSBTAG00000020321) #26	SKAP1 (ENSBTAG00000000641) #27	HOXB1 (ENSBTAG00000007603) #28	HOXB2 (ENSBTAG00000009979) #29	HOXB3 (ENSBTAG00000021427) #31	HOXB4 (ENSBTAG00000039599) #30	HOXB5 (ENSBTAG00000045835) #32	HOXB6 (ENSBTAG00000050006) #33	HOXB7 (ENSBTAG00000005546) #34	HOXB8 (ENSBTAG00000054162) #35	HOXB9 (ENSBTAG00000054623) #36	HOXB13 (ENSBTAG00000014663)
Hybrid Bos Indicus	MODERN SPECIES	10	GPR179 (ENSBIXG00005030235)	ENSBIXG00005030228	MRPL45 (ENSBIXG00005030219)	NPEPPS (ENSBIXG00005030159)	KPNB1 (ENSBIXG00005030131)	TBKBP1 (ENSBIXG00005030097)	TBX21 (ENSBIXG00005030084)	OSBPL7 (ENSBIXG00005030039) #14	MRPL10 (ENSBIXG00005030023) #15	LRRC46 (ENSBIXG00005030008) #16	SCRN2 (ENSBIXG00005029976) #17	SP6 (ENSBIXG00005029948) #18	ENSBIXG00005029934 #19	PNPO (ENSBIXG00005029918) #20	PRR15L (ENSBIXG00005029905) #21	CDK5RAP3 (ENSBIXG00005029886) #22	COPZ2 (ENSBIXG00005029862) #23	NFE2L1 (ENSBIXG00005029748) #24	CBX1 (ENSBIXG00005029691) #25	SNX11 (ENSBIXG00005029679) #26	SKAP1 (ENSBIXG00005029657) #27	ENSBIXG00005029636	HOXB1 (ENSBIXG00005029618) #28	HOXB2 (ENSBIXG00005029607) #29	HOXB3 (ENSBIXG00005029591) #31	HOXB4 (ENSBIXG00005029577) #30	HOXB5 (ENSBIXG00005029559) #32	HOXB6 (ENSBIXG00005029554) #33	HOXB7 (ENSBIXG00005029546) #34	HOXB8 (ENSBIXG00005029530) #35	HOXB9 (ENSBIXG00005029519) #36
American bison	MODERN SPECIES	3101	ENSBBBG00000005882	MRPL45 (ENSBBBG00000022294)	ENSBBBG00000022252	NPEPPS (ENSBBBG00000022236)	KPNB1 (ENSBBBG00000022131)	ENSBBBG00000022076	TBX21 (ENSBBBG00000005826)	OSBPL7 (ENSBBBG00000022056) #14	MRPL10 (ENSBBBG00000021983) #15	LRRC46 (ENSBBBG00000021972) #16	SCRN2 (ENSBBBG00000021958) #17	SP6 (ENSBBBG00000021924) #18	SP2 (ENSBBBG00000021914) #19	PNPO (ENSBBBG00000021862) #20	PRR15L (ENSBBBG00000021809) #21	CDK5RAP3 (ENSBBBG00000021808) #22	COPZ2 (ENSBBBG00000021782) #23	NFE2L1 (ENSBBBG00000021740) #24	ENSBBBG00000021675 ##25	SNX11 (ENSBBBG00000021652) #26	SKAP1 (ENSBBBG00000021634) #27	HOXB1 (ENSBBBG00000021601) #28	HOXB2 (ENSBBBG00000021598) #29	HOXB3 (ENSBBBG00000005740) #31	HOXB4 (ENSBBBG00000021585) #30	HOXB5 (ENSBBBG00000021577) #32	HOXB6 (ENSBBBG00000021567) #33	HOXB7 (ENSBBBG00000021565) #34	HOXB9 (ENSBBBG00000021558) #36	HOXB13 (ENSBBBG00000021546)	TTLL6 (ENSBBBG00000021540)
Siberian musk deer	MODERN SPECIES	1210	MRPL45 (ENSMMSG00000018849)	ENSMMSG00000018805	NPEPPS (ENSMMSG00000018632)	KPNB1 (ENSMMSG00000018546)	TBKBP1 (ENSMMSG00000018512)	TBX21 (ENSMMSG00000018475)	ENSMMSG00000018451	OSBPL7 (ENSMMSG00000018422) #14	MRPL10 (ENSMMSG00000018396) #15	LRRC46 (ENSMMSG00000018351) #16	SCRN2 (ENSMMSG00000018238) #17	SP6 (ENSMMSG00000018224) #18	SP2 (ENSMMSG00000024551) #19	PNPO (ENSMMSG00000024550) #20	PRR15L (ENSMMSG00000024549) #21	CDK5RAP3 (ENSMMSG00000024548) #22	COPZ2 (ENSMMSG00000024546) #23	NFE2L1 (ENSMMSG00000024541) #24	CBX1 (ENSMMSG00000024540) #25	SNX11 (ENSMMSG00000024538) #26	SKAP1 (ENSMMSG00000024536) #27	ENSMMSG00000024535	HOXB1 (ENSMMSG00000024533) #28	HOXB2 (ENSMMSG00000024532) #29	HOXB3 (ENSMMSG00000024531) #31	ENSMMSG00000024530	HOXB4 (ENSMMSG00000024528) #30	HOXB5 (ENSMMSG00000024526) #32	HOXB6 (ENSMMSG00000024525) #33	HOXB7 (ENSMMSG00000024523) #34	HOXB8 (ENSMMSG00000024522) #35
Camelidae	ANCESTRAL SPECIES	60	ENSGT00940000157982.b	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000185410	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000154152.d.a.a ##25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161386 #36
Arabian camel	MODERN SPECIES	7	ENSCDRG00005019433	SOCS7 (ENSCDRG00005019385)	GPR179 (ENSCDRG00005019342)	MRPL45 (ENSCDRG00005019287)	NPEPPS (ENSCDRG00005019119)	KPNB1 (ENSCDRG00005019017)	TBKBP1 (ENSCDRG00005018994)	TBX21 (ENSCDRG00005018980)	OSBPL7 (ENSCDRG00005018943) #14	MRPL10 (ENSCDRG00005018906) #15	LRRC46 (ENSCDRG00005018865) #16	SCRN2 (ENSCDRG00005018805) #17	SP6 (ENSCDRG00005018791) #18	SP2 (ENSCDRG00005018756) #19	PRR15L (ENSCDRG00005018636) #21	CDK5RAP3 (ENSCDRG00005018564) #22	COPZ2 (ENSCDRG00005018538) #23	ENSCDRG00005018515	NFE2L1 (ENSCDRG00005018357) #24	CBX1 (ENSCDRG00005018330) ##25	SNX11 (ENSCDRG00005018232) #26	SKAP1 (ENSCDRG00005018166) #27	HOXB1 (ENSCDRG00005018147) #28	HOXB2 (ENSCDRG00005018121) #29	HOXB3 (ENSCDRG00005018104) #31	HOXB4 (ENSCDRG00005018079) #30	HOXB5 (ENSCDRG00005018055) #32	HOXB6 (ENSCDRG00005018029) #33	HOXB7 (ENSCDRG00005018007) #34	HOXB9 (ENSCDRG00005017862) #36	HOXB13 (ENSCDRG00005017741)
Alpaca	MODERN SPECIES	3486																ENSVPAG00000002600 #22	COPZ2 (ENSVPAG00000002601) #23
Suina	ANCESTRAL SPECIES		ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d.b #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Chacoan peccary	MODERN SPECIES	145	SOCS7 (ENSCWAG00000001002)	GPR179 (ENSCWAG00000000941)	MRPL45 (ENSCWAG00000000905)	NPEPPS (ENSCWAG00000000826)	KPNB1 (ENSCWAG00000000755)	TBKBP1 (ENSCWAG00000000726)	TBX21 (ENSCWAG00000000709)	OSBPL7 (ENSCWAG00000000623) #14	MRPL10 (ENSCWAG00000000589) #15	LRRC46 (ENSCWAG00000000570) #16	SCRN2 (ENSCWAG00000000520) #17	SP6 (ENSCWAG00000000502) #18	SP2 (ENSCWAG00000000474) #19	PNPO (ENSCWAG00000000427) #20	PRR15L (ENSCWAG00000000410) #21	CDK5RAP3 (ENSCWAG00000000377) #22	COPZ2 (ENSCWAG00000000341) #23	NFE2L1 (ENSCWAG00000000185) #24	CBX1 (ENSCWAG00000000121) #25	SNX11 (ENSCWAG00000000070) #26	SKAP1 (ENSCWAG00000000046) #27	HOXB1 (ENSCWAG00000022080) #28	HOXB2 (ENSCWAG00000022078) #29	HOXB3 (ENSCWAG00000022077) #31	HOXB4 (ENSCWAG00000022074) #30	HOXB5 (ENSCWAG00000022071) #32	HOXB6 (ENSCWAG00000022069) #33	HOXB7 (ENSCWAG00000022067) #34	HOXB8 (ENSCWAG00000022066) #35	HOXB9 (ENSCWAG00000022065) #36	HOXB13 (ENSCWAG00000022063)
Pig	MODERN SPECIES	3	SOCS7 (ENSSSCG00000018057)	GPR179 (ENSSSCG00000020884)	MRPL45 (ENSSSCG00000023263)	NPEPPS (ENSSSCG00000017513)	KPNB1 (ENSSSCG00000017514)	ENSSSCG00000057498	TBX21 (ENSSSCG00000017517)	OSBPL7 (ENSSSCG00000017518) #14	MRPL10 (ENSSSCG00000017519) #15	LRRC46 (ENSSSCG00000017520) #16	SCRN2 (ENSSSCG00000017521) #17	SP6 (ENSSSCG00000017522) #18	SP2 (ENSSSCG00000017516) #19	PNPO (ENSSSCG00000032782) #20	PRR15L (ENSSSCG00000054179) #21	CDK5RAP3 (ENSSSCG00000017524) #22	COPZ2 (ENSSSCG00000017526) #23	NFE2L1 (ENSSSCG00000017525) #24	CBX1 (ENSSSCG00000017529) #25	SNX11 (ENSSSCG00000017528) #26	SKAP1 (ENSSSCG00000017527) #27	HOXB1 (ENSSSCG00000017532) #28	HOXB2 (ENSSSCG00000017533) #29	HOXB3 (ENSSSCG00000017534) #31	HOXB4 (ENSSSCG00000017535) #30	HOXB5 (ENSSSCG00000017540) #32	HOXB6 (ENSSSCG00000017539) #33	HOXB7 (ENSSSCG00000017538) #34	HOXB8 (ENSSSCG00000017537) #35	HOXB9 (ENSSSCG00000061856) #36	HOXB13 (ENSSSCG00000017541)
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Afrotheria	ANCESTRAL SPECIES	2	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Tenrec	MODERN SPECIES	1104																ENSETEG00000016926 #22
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Elephant	MODERN SPECIES	310	SOCS7 (ENSLAFG00000015279)	ENSLAFG00000015267	MRPL45 (ENSLAFG00000014050)	NPEPPS (ENSLAFG00000001325)	KPNB1 (ENSLAFG00000001328)	TBKBP1 (ENSLAFG00000001330)	TBX21 (ENSLAFG00000028463)	OSBPL7 (ENSLAFG00000006819) #14	MRPL10 (ENSLAFG00000028127) #15	LRRC46 (ENSLAFG00000006826) #16	SCRN2 (ENSLAFG00000025964) #17	SP6 (ENSLAFG00000010701) #18	SP2 (ENSLAFG00000021817) #19	PNPO (ENSLAFG00000015550) #20	PRR15L (ENSLAFG00000015553) #21	CDK5RAP3 (ENSLAFG00000000339) #22	ENSLAFG00000030284	ENSLAFG00000015209 #23	NFE2L1 (ENSLAFG00000018523) #24	CBX1 (ENSLAFG00000018526) #25	SNX11 (ENSLAFG00000018529) #26	SKAP1 (ENSLAFG00000018530) #27	ENSLAFG00000031610 #28	HOXB2 (ENSLAFG00000030161) #29	ENSLAFG00000030505	HOXB3 (ENSLAFG00000030335) #31	HOXB4 (ENSLAFG00000013588) #30	HOXB5 (ENSLAFG00000013590) #32	HOXB6 (ENSLAFG00000013593) #33	HOXB7 (ENSLAFG00000030637) #34	HOXB8 (ENSLAFG00000030682) #35
Hyrax	MODERN SPECIES	4555									OSBPL7 (ENSPCAG00000001932) #14	ENSPCAG00000002027	LRRC46 (ENSPCAG00000002042) #16	SCRN2 (ENSPCAG00000002092) #17	SP2 (ENSPCAG00000002140) #19	PNPO (ENSPCAG00000002196) #20	PRR15L (ENSPCAG00000002248) #21	CDK5RAP3 (ENSPCAG00000002257) #22	COPZ2 (ENSPCAG00000002327) #23	CBX1 (ENSPCAG00000002381) #25
Xenarthra	ANCESTRAL SPECIES	258							ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27
Sloth	MODERN SPECIES	894																ENSCHOG00000013179 #22
Armadillo	MODERN SPECIES	825							ENSDNOG00000045438	OSBPL7 (ENSDNOG00000033308) #14	MRPL10 (ENSDNOG00000024176) #15	LRRC46 (ENSDNOG00000047964) #16	SCRN2 (ENSDNOG00000034719) #17	SP6 (ENSDNOG00000042665) #18	SP2 (ENSDNOG00000013944) #19	PNPO (ENSDNOG00000032160) #20	PRR15L (ENSDNOG00000008323) #21	CDK5RAP3 (ENSDNOG00000030779) #22	COPZ2 (ENSDNOG00000037475) #23	NFE2L1 (ENSDNOG00000047006) #24	CBX1 (ENSDNOG00000040249) #25	SNX11 (ENSDNOG00000032877) #26	SKAP1 (ENSDNOG00000039133) #27
Marsupialia	ANCESTRAL SPECIES	13	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397.b	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Marsupialia_b	ANCESTRAL SPECIES	16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397.b	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Diprotodontia	ANCESTRAL SPECIES	9	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397.b	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Diprotodontia_a	ANCESTRAL SPECIES	11	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246.e	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397.b	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
koala	MODERN SPECIES	67	ENSPCIG00000001092	MRPL45 (ENSPCIG00000001069)	NPEPPS (ENSPCIG00000009620)	KPNB1 (ENSPCIG00000001034)	TBKBP1 (ENSPCIG00000001017)	ENSPCIG00000000999	OSBPL7 (ENSPCIG00000000940) #14	MRPL10 (ENSPCIG00000031062) #15	LRRC46 (ENSPCIG00000000900) #16	SCRN2 (ENSPCIG00000000883) #17	SP6 (ENSPCIG00000000873) #18	SP2 (ENSPCIG00000000843) #19	ENSPCIG00000000834	PNPO (ENSPCIG00000000828) #20	PRR15L (ENSPCIG00000000814) #21	CDK5RAP3 (ENSPCIG00000000798) #22	COPZ2 (ENSPCIG00000000757) #23	NFE2L1 (ENSPCIG00000000720) #24	CBX1 (ENSPCIG00000000630) #25	SNX11 (ENSPCIG00000000612) #26	SKAP1 (ENSPCIG00000000339) #27	HOXB1 (ENSPCIG00000033449) #28	HOXB2 (ENSPCIG00000000295) #29	HOXB3 (ENSPCIG00000000217) #31	HOXB4 (ENSPCIG00000000195) #30	HOXB5 (ENSPCIG00000031080) #32	HOXB6 (ENSPCIG00000000076) #33	HOXB7 (ENSPCIG00000000064) #34	HOXB9 (ENSPCIG00000030251) #36	HOXB13 (ENSPCIG00000030249)	TTLL6 (ENSPCIG00000030247)
Common wonbat	MODERN SPECIES	1037	ENSVURG00010007072	MRPL45 (ENSVURG00010007098)	ENSVURG00010007112	KPNB1 (ENSVURG00010007118)	TBKBP1 (ENSVURG00010007134)	TBX21 (ENSVURG00010007151)	OSBPL7 (ENSVURG00010007175) #14	MRPL10 (ENSVURG00010007313) #15	LRRC46 (ENSVURG00010007320) #16	SCRN2 (ENSVURG00010007326) #17	SP6 (ENSVURG00010007336) #18	SP2 (ENSVURG00010007347) #19	ENSVURG00010007365	PNPO (ENSVURG00010007376) #20	PRR15L (ENSVURG00010007394) #21	CDK5RAP3 (ENSVURG00010007403) #22	COPZ2 (ENSVURG00010007430) #23	NFE2L1 (ENSVURG00010007465) #24	CBX1 (ENSVURG00010007537) #25	SNX11 (ENSVURG00010007541) #26	SKAP1 (ENSVURG00010007559) #27	HOXB1 (ENSVURG00010007572) #28	HOXB2 (ENSVURG00010007579) #29	HOXB3 (ENSVURG00010007587) #31	HOXB4 (ENSVURG00010007589) #30	HOXB5 (ENSVURG00010007599) #32	HOXB6 (ENSVURG00010007602) #33	HOXB7 (ENSVURG00010007606) #34	HOXB8 (ENSVURG00010007609) #35	HOXB9 (ENSVURG00010007619) #36	HOXB13 (ENSVURG00010007629)
Wallaby	MODERN SPECIES	1766																CDK5RAP3 (ENSMEUG00000009786) #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000025003	ENSSHAG00000018038	ENSSHAG00000018214	TBKBP1 (ENSSHAG00000021573)	ENSSHAG00000018315	ENSSHAG00000028042	OSBPL7 (ENSSHAG00000003116) #14	MRPL10 (ENSSHAG00000030224) #15	LRRC46 (ENSSHAG00000003740) #16	SCRN2 (ENSSHAG00000003868) #17	SP6 (ENSSHAG00000030597) #18	SP2 (ENSSHAG00000005633) #19	ENSSHAG00000005930	PNPO (ENSSHAG00000023730) #20	PRR15L (ENSSHAG00000025985) #21	CDK5RAP3 (ENSSHAG00000006548) #22	COPZ2 (ENSSHAG00000023675) #23	NFE2L1 (ENSSHAG00000026195) #24	CBX1 (ENSSHAG00000023789) #25	SNX11 (ENSSHAG00000029423) #26	ENSSHAG00000029678	HOXB1 (ENSSHAG00000012150) #28	HOXB2 (ENSSHAG00000012232) #29	HOXB3 (ENSSHAG00000031207) #31	HOXB5 (ENSSHAG00000024100) #32	HOXB7 (ENSSHAG00000022783) #34	HOXB8 (ENSSHAG00000023021) #35	HOXB9 (ENSSHAG00000012684) #36	HOXB13 (ENSSHAG00000013189)	TTLL6 (ENSSHAG00000013396)	CALCOCO2 (ENSSHAG00000022264)
Opossum	MODERN SPECIES	1	GPR179 (ENSMODG00000012564)	MRPL45 (ENSMODG00000012560)	NPEPPS (ENSMODG00000012557)	KPNB1 (ENSMODG00000012505)	ENSMODG00000039000	ENSMODG00000012526	OSBPL7 (ENSMODG00000012518) #14	MRPL10 (ENSMODG00000038269) #15	LRRC46 (ENSMODG00000012473) #16	SCRN2 (ENSMODG00000012467) #17	SP6 (ENSMODG00000012454) #18	SP2 (ENSMODG00000012452) #19	ENSMODG00000050066	PNPO (ENSMODG00000012446) #20	PRR15L (ENSMODG00000024090) #21	CDK5RAP3 (ENSMODG00000012439) #22	COPZ2 (ENSMODG00000012424) #23	NFE2L1 (ENSMODG00000012375) #24	CBX1 (ENSMODG00000012368) #25	SNX11 (ENSMODG00000051179) #26	SKAP1 (ENSMODG00000012360) #27	HOXB1 (ENSMODG00000046816) #28	HOXB2 (ENSMODG00000012347) #29	HOXB3 (ENSMODG00000012344) #31	HOXB4 (ENSMODG00000042083) #30	HOXB5 (ENSMODG00000012338) #32	HOXB6 (ENSMODG00000012334) #33	HOXB7 (ENSMODG00000044053) #34	HOXB9 (ENSMODG00000012329) #36	HOXB13 (ENSMODG00000012310)	ENSMODG00000025670
Platypus	MODERN SPECIES	2	PPP2R1B (ENSOANG00000014964)	ENSOANG00000037618	ENSOANG00000036757	ENSOANG00000036194	KPNB1 (ENSOANG00000005371)	TBKBP1 (ENSOANG00000030462)	ENSOANG00000012287	OSBPL7 (ENSOANG00000012288) #14	MRPL10 (ENSOANG00000006797) #15	ENSOANG00000001541 #16	SCRN2 (ENSOANG00000001540) #17	SP2 (ENSOANG00000050083) #19	ENSOANG00000049621	PNPO (ENSOANG00000013451) #20	PRR15L (ENSOANG00000013452) #21	ENSOANG00000048116 #22	NFE2L1 (ENSOANG00000043783) #24	CBX1 (ENSOANG00000049057) #25	ENSOANG00000039817 #26	SKAP1 (ENSOANG00000010840) #27	ENSOANG00000044458	HOXB1 (ENSOANG00000010307) #28	HOXB2 (ENSOANG00000041050) #29	HOXB3 (ENSOANG00000039840) #31	HOXB4 (ENSOANG00000042426) #30	HOXB5 (ENSOANG00000051056) #32	HOXB6 (ENSOANG00000050952) #33	HOXB7 (ENSOANG00000051269) #34	HOXB8 (ENSOANG00000047281) #35	HOXB9 (ENSOANG00000005338) #36	HOXB13 (ENSOANG00000007689)
Sauria	ANCESTRAL SPECIES	26	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Lepidosauria	ANCESTRAL SPECIES	23	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.c.a ##25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.c.a ##25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Laterata	ANCESTRAL SPECIES	11	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.c.a ##25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Common wall lizard	MODERN SPECIES	4	ARHGAP23 (ENSPMRG00000015886)	SOCS7 (ENSPMRG00000015866)	GPR179 (ENSPMRG00000013502)	MRPL45 (ENSPMRG00000013492)	NPEPPS (ENSPMRG00000013437)	KPNB1 (ENSPMRG00000013395)	TBKBP1 (ENSPMRG00000013381)	TBX21 (ENSPMRG00000013375)	OSBPL7 (ENSPMRG00000013357) #14	LRRC46 (ENSPMRG00000013345) #16	SCRN2 (ENSPMRG00000013336) #17	SP6 (ENSPMRG00000013329) #18	SP2 (ENSPMRG00000013320) #19	ENSPMRG00000013316	PNPO (ENSPMRG00000013310) #20	CDK5RAP3 (ENSPMRG00000013294) #22	COPZ2 (ENSPMRG00000013275) #23	ENSPMRG00000013258	NFE2L1 (ENSPMRG00000013246) #24	SNX11 (ENSPMRG00000013221) #26	CBX1 (ENSPMRG00000013202) ##25	ENSPMRG00000013192	HOXB1 (ENSPMRG00000013189) #28	HOXB2 (ENSPMRG00000013183) #29	HOXB3 (ENSPMRG00000013178) #31	HOXB4 (ENSPMRG00000013173) #30	HOXB5 (ENSPMRG00000013170) #32	HOXB6 (ENSPMRG00000013165) #33	HOXB7 (ENSPMRG00000013164) #34	HOXB8 (ENSPMRG00000013160) #35	HOXB9 (ENSPMRG00000013158) #36
Argentine black and white tegu	MODERN SPECIES	32	GPR179 (ENSSMRG00000000359)	MRPL45 (ENSSMRG00000000340)	NPEPPS (ENSSMRG00000000307)	KPNB1 (ENSSMRG00000000247)	TBKBP1 (ENSSMRG00000000217)	TBX21 (ENSSMRG00000000195)	OSBPL7 (ENSSMRG00000000139) #14	MRPL10 (ENSSMRG00000000096) #15	LRRC46 (ENSSMRG00000000025) #16	SCRN2 (ENSSMRG00000021858) #17	SP6 (ENSSMRG00000021857) #18	SP2 (ENSSMRG00000021856) #19	ENSSMRG00000021855	PNPO (ENSSMRG00000021854) #20	PRR15L (ENSSMRG00000021853) #21	CDK5RAP3 (ENSSMRG00000021852) #22	COPZ2 (ENSSMRG00000021851) #23	NFE2L1 (ENSSMRG00000021850) #24	CBX1 (ENSSMRG00000021849) ##25	SNX11 (ENSSMRG00000021848) #26	SKAP1 (ENSSMRG00000021847) #27	HOXB1 (ENSSMRG00000021845) #28	HOXB2 (ENSSMRG00000021844) #29	HOXB3 (ENSSMRG00000021842) #31	HOXB4 (ENSSMRG00000021841) #30	HOXB5 (ENSSMRG00000021839) #32	HOXB6 (ENSSMRG00000021838) #33	HOXB7 (ENSSMRG00000021837) #34	HOXB8 (ENSSMRG00000021836) #35	HOXB9 (ENSSMRG00000021835) #36	HOXB13 (ENSSMRG00000021834)
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00960000192469	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.c.a ##25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000160776.a	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898.e	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00960000192469	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590.b #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.c.a ##25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230.g #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Indian cobra	MODERN SPECIES	337	SOCS7 (ENSNNAG00000007201)	ENSNNAG00000007277	MRPL45 (ENSNNAG00000007294)	NPEPPS (ENSNNAG00000007364)	ENSNNAG00000007982	TBKBP1 (ENSNNAG00000008059)	TBX21 (ENSNNAG00000008104)	OSBPL7 (ENSNNAG00000008187) #14	MRPL10 (ENSNNAG00000008730) #15	ENSNNAG00000008753	SCRN2 (ENSNNAG00000008774) #17	SP6 (ENSNNAG00000008820) #18	ENSNNAG00000008826 #19	PNPO (ENSNNAG00000008837) #20	PRR15L (ENSNNAG00000008859) #21	CDK5RAP3 (ENSNNAG00000008878) #22	COPZ2 (ENSNNAG00000008924) #23	NFE2L1 (ENSNNAG00000009022) #24	ENSNNAG00000009045 ##25	SNX11 (ENSNNAG00000009074) #26	HOXB1 (ENSNNAG00000009145) #28	HOXB2 (ENSNNAG00000009232) #29	HOXB3 (ENSNNAG00000009256) #31	HOXB4 (ENSNNAG00000009277) #30	HOXB5 (ENSNNAG00000009308) #32	HOXB6 (ENSNNAG00000009328) #33	HOXB7 (ENSNNAG00000009344) #34	HOXB8 (ENSNNAG00000009361) #35	HOXB9 (ENSNNAG00000009384) #36	HOXB13 (ENSNNAG00000009423)	ENSNNAG00000009471
Elapidae_a	ANCESTRAL SPECIES	19	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898.e	ENSGT00940000153704.B.f	ENSGT00940000153704.B.e	ENSGT00940000160397	ENSGT00940000157439.c #14	ENSGT00390000000603 #15	ENSGT00960000192469	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590.b #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.c.a ##25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230.g #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Acanthophiinae	ANCESTRAL SPECIES	19	ENSGT00940000160776.a	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898.e	ENSGT00940000153704.B.f	ENSGT00940000153704.B.e	ENSGT00940000160397	ENSGT00940000157439.c #14	ENSGT00390000000603 #15	ENSGT00960000192469	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590.b #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.c.a ##25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230.g #34	ENSGT00940000161529.g #35	ENSGT00940000161386 #36	ENSGT00940000159029
Mainland tiger snake	MODERN SPECIES	29	SOCS7 (ENSNSUG00000008683)	ENSNSUG00000008682	MRPL45 (ENSNSUG00000008681)	NPEPPS (ENSNSUG00000008148)	ENSNSUG00000007596	TBKBP1 (ENSNSUG00000007595)	TBX21 (ENSNSUG00000007594)	OSBPL7 (ENSNSUG00000007592) #14	MRPL10 (ENSNSUG00000007520) #15	ENSNSUG00000007519	SCRN2 (ENSNSUG00000007517) #17	SP6 (ENSNSUG00000007513) #18	ENSNSUG00000007509 #19	PNPO (ENSNSUG00000007506) #20	PRR15L (ENSNSUG00000007504) #21	CDK5RAP3 (ENSNSUG00000007503) #22	COPZ2 (ENSNSUG00000007459) #23	NFE2L1 (ENSNSUG00000007456) #24	ENSNSUG00000007455 ##25	SNX11 (ENSNSUG00000007454) #26	SKAP1 (ENSNSUG00000007452) #27	HOXB1 (ENSNSUG00000007450) #28	HOXB2 (ENSNSUG00000007449) #29	HOXB3 (ENSNSUG00000007448) #31	HOXB4 (ENSNSUG00000007447) #30	HOXB5 (ENSNSUG00000007445) #32	HOXB6 (ENSNSUG00000007444) #33	ENSNSUG00000007443 #34	ENSNSUG00000007442 #35	HOXB9 (ENSNSUG00000007441) #36	HOXB13 (ENSNSUG00000007440)
Eastern brown snake	MODERN SPECIES	49	ENSPTXG00000013934	MRPL45 (ENSPTXG00000013933)	NPEPPS (ENSPTXG00000013932)	ENSPTXG00000013931	ENSPTXG00000013930	ENSPTXG00000013929	TBX21 (ENSPTXG00000013928)	OSBPL7 (ENSPTXG00000013922) #14	MRPL10 (ENSPTXG00000013921) #15	ENSPTXG00000013920	SCRN2 (ENSPTXG00000013919) #17	SP6 (ENSPTXG00000013918) #18	ENSPTXG00000013917 #19	PNPO (ENSPTXG00000013916) #20	PRR15L (ENSPTXG00000013915) #21	CDK5RAP3 (ENSPTXG00000013914) #22	COPZ2 (ENSPTXG00000013913) #23	NFE2L1 (ENSPTXG00000013912) #24	ENSPTXG00000013911 ##25	SNX11 (ENSPTXG00000013909) #26	SKAP1 (ENSPTXG00000013908) #27	ENSPTXG00000013907	HOXB1 (ENSPTXG00000013906) #28	HOXB2 (ENSPTXG00000013905) #29	HOXB3 (ENSPTXG00000013904) #31	HOXB4 (ENSPTXG00000013902) #30	HOXB5 (ENSPTXG00000013900) #32	HOXB6 (ENSPTXG00000013898) #33	ENSPTXG00000013897 #34	ENSPTXG00000013896 #35	HOXB9 (ENSPTXG00000013894) #36
Blue-lipped sea krait	MODERN SPECIES	3367													SP2 (ENSLLTG00000016876) #19	PNPO (ENSLLTG00000016879) #20	PRR15L (ENSLLTG00000016880) #21	CDK5RAP3 (ENSLLTG00000016881) #22
Lizard	MODERN SPECIES	5	SOCS7 (ENSACAG00000032737)	GPR179 (ENSACAG00000043732)	MRPL45 (ENSACAG00000007343)	NPEPPS (ENSACAG00000007242)	KPNB1 (ENSACAG00000007097)	TBKBP1 (ENSACAG00000007079)	TBX21 (ENSACAG00000007044)	OSBPL7 (ENSACAG00000006906) #14	MRPL10 (ENSACAG00000006889) #15	LRRC46 (ENSACAG00000006887) #16	SCRN2 (ENSACAG00000006837) #17	SP6 (ENSACAG00000006831) #18	SP2 (ENSACAG00000006793) #19	PNPO (ENSACAG00000006764) #20	PRR15L (ENSACAG00000006762) #21	CDK5RAP3 (ENSACAG00000006686) #22	COPZ2 (ENSACAG00000006651) #23	NFE2L1 (ENSACAG00000006615) #24	ENSACAG00000006594 ##25	SNX11 (ENSACAG00000006556) #26	SKAP1 (ENSACAG00000006534) #27	ENSACAG00000034966	ENSACAG00000041448	HOXB1 (ENSACAG00000035547) #28	HOXB2 (ENSACAG00000006521) #29	HOXB3 (ENSACAG00000006508) #31	HOXB4 (ENSACAG00000006499) #30	HOXB5 (ENSACAG00000042998) #32	HOXB6 (ENSACAG00000034900) #33	HOXB7 (ENSACAG00000041279) #34	HOXB8 (ENSACAG00000036553) #35
tuatara	MODERN SPECIES	1705	SOCS7 (ENSSPUG00000017876)	ENSSPUG00000017870	MRPL45 (ENSSPUG00000017848)	NPEPPS (ENSSPUG00000017816)	KPNB1 (ENSSPUG00000017799)	TBKBP1 (ENSSPUG00000017792)	TBX21 (ENSSPUG00000017746)	OSBPL7 (ENSSPUG00000017709) #14	MRPL10 (ENSSPUG00000017695) #15	LRRC46 (ENSSPUG00000017689) #16	SCRN2 (ENSSPUG00000017669) #17	SP6 (ENSSPUG00000017659) #18	SP2 (ENSSPUG00000017648) #19	ENSSPUG00000017635	PRR15L (ENSSPUG00000017603) #21	CDK5RAP3 (ENSSPUG00000017587) #22	COPZ2 (ENSSPUG00000017576) #23	NFE2L1 (ENSSPUG00000017549) #24	CBX1 (ENSSPUG00000017523) ##25	SNX11 (ENSSPUG00000017511) #26	SKAP1 (ENSSPUG00000017498) #27	ENSSPUG00000017491
Archelosauria	ANCESTRAL SPECIES	21	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Archosauria	ANCESTRAL SPECIES	20	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Aves	ANCESTRAL SPECIES	26	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	625												SP2 (ENSSCUG00000008476) #19	PNPO (ENSSCUG00000008474) #20	PRR15L (ENSSCUG00000008473) #21	ENSSCUG00000008472 #22	ENSSCUG00000008471 #22	NFE2L1 (ENSSCUG00000008470) #24	CBX1 (ENSSCUG00000008469) #25	SNX11 (ENSSCUG00000008468) #26	SKAP1 (ENSSCUG00000008467) #27	HOXB1 (ENSSCUG00000008466) #28	HOXB2 (ENSSCUG00000008465) #29	HOXB3 (ENSSCUG00000008463) #31	HOXB4 (ENSSCUG00000008461) #30	HOXB5 (ENSSCUG00000008457) #32	HOXB7 (ENSSCUG00000008454) #34	HOXB8 (ENSSCUG00000008451) #35	HOXB9 (ENSSCUG00000008450) #36	CALCOCO2 (ENSSCUG00000008444)	UBE2Z (ENSSCUG00000008440)	SNF8 (ENSSCUG00000008438)
African ostrich	MODERN SPECIES	625													SP2 (ENSSCUG00000008476) #19	PNPO (ENSSCUG00000008474) #20	PRR15L (ENSSCUG00000008473) #21	ENSSCUG00000008472 #22	ENSSCUG00000008471 #22	NFE2L1 (ENSSCUG00000008470) #24	CBX1 (ENSSCUG00000008469) #25	SNX11 (ENSSCUG00000008468) #26	SKAP1 (ENSSCUG00000008467) #27	HOXB1 (ENSSCUG00000008466) #28	HOXB2 (ENSSCUG00000008465) #29	HOXB3 (ENSSCUG00000008463) #31	HOXB4 (ENSSCUG00000008461) #30	HOXB5 (ENSSCUG00000008457) #32	HOXB7 (ENSSCUG00000008454) #34	HOXB8 (ENSSCUG00000008451) #35	HOXB9 (ENSSCUG00000008450) #36	CALCOCO2 (ENSSCUG00000008444)	UBE2Z (ENSSCUG00000008440)
Neognathae	ANCESTRAL SPECIES	23	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Galloanserae	ANCESTRAL SPECIES	23	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439.i #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Anatidae	ANCESTRAL SPECIES	70								ENSGT00940000157439.i #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Duck	MODERN SPECIES	3975														PNPO (ENSAPLG00000029709) #20	ENSAPLG00000024106 #21	CDK5RAP3 (ENSAPLG00000018896) #22	NFE2L1 (ENSAPLG00000029042) #24	CBX1 (ENSAPLG00000007894) #25
Pink-footed goose	MODERN SPECIES	305									ENSABRG00000001168 #14	MRPL10 (ENSABRG00000001154) #15	LRRC46 (ENSABRG00000001138) #16	SCRN2 (ENSABRG00000001107) #17	SP6 (ENSABRG00000001100) #18	SP2 (ENSABRG00000001034) #19	PNPO (ENSABRG00000000676) #20	CDK5RAP3 (ENSABRG00000000636) #22	ENSABRG00000000606 #23	NFE2L1 (ENSABRG00000000594) #24	CBX1 (ENSABRG00000000584) #25	SNX11 (ENSABRG00000000576) #26	SKAP1 (ENSABRG00000000558) #27	HOXB1 (ENSABRG00000000522) #28	HOXB2 (ENSABRG00000000517) #29	HOXB3 (ENSABRG00000000506) #31	HOXB4 (ENSABRG00000000495) #30	HOXB5 (ENSABRG00000000485) #32	HOXB6 (ENSABRG00000000480) #33	HOXB7 (ENSABRG00000000473) #34	HOXB8 (ENSABRG00000000461) #35	HOXB9 (ENSABRG00000000456) #36	HOXB13 (ENSABRG00000000421)
Phasianidae	ANCESTRAL SPECIES	21	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439.i #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029	ENSGT00950000183025.a
Japanese quail	MODERN SPECIES	19	ENSCJPG00005002305	SRCIN1 (ENSCJPG00005002304)	ARHGAP23 (ENSCJPG00005001122)	SOCS7 (ENSCJPG00005001011)	ENSCJPG00005001001	MRPL45 (ENSCJPG00005000986)	NPEPPS (ENSCJPG00005000955)	KPNB1 (ENSCJPG00005000892)	TBX21 (ENSCJPG00005019401)	MRPL10 (ENSCJPG00005019391) #15	LRRC46 (ENSCJPG00005019390) #16	SCRN2 (ENSCJPG00005019389) #17	SP6 (ENSCJPG00005019388) #18	SP2 (ENSCJPG00005019387) #19	PRR15L (ENSCJPG00005019386) #21	CDK5RAP3 (ENSCJPG00005019379) #22	NFE2L1 (ENSCJPG00005019378) #24	CBX1 (ENSCJPG00005019377) #25	SNX11 (ENSCJPG00005019376) #26	SKAP1 (ENSCJPG00005019375) #27	HOXB1 (ENSCJPG00005019374) #28	HOXB2 (ENSCJPG00005019373) #29	HOXB3 (ENSCJPG00005019372) #31	HOXB4 (ENSCJPG00005019371) #30	HOXB5 (ENSCJPG00005019369) #32	HOXB6 (ENSCJPG00005019368) #33	HOXB7 (ENSCJPG00005019367) #34	HOXB8 (ENSCJPG00005019366) #35	HOXB9 (ENSCJPG00005019365) #36	HOXB13 (ENSCJPG00005019363)	ENSCJPG00005019362
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246.c.b	ENSGT00940000155246.c.a	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439.i #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029	ENSGT00950000183025.a
Chicken	MODERN SPECIES	19	ENSGALG00010024047	MRPL45 (ENSGALG00010024039)	ENSGALG00010021150	ENSGALG00010024010	KPNB1 (ENSGALG00010023927)	TBKBP1 (ENSGALG00010023903)	TBX21 (ENSGALG00010023883)	OSBPL7 (ENSGALG00010023841) #14	MRPL10 (ENSGALG00010023807) #15	LRRC46 (ENSGALG00010023784) #16	SCRN2 (ENSGALG00010023770) #17	SP6 (ENSGALG00010023742) #18	SP2 (ENSGALG00010023730) #19	PNPO (ENSGALG00010023726) #20	PRR15L (ENSGALG00010023722) #21	CDK5RAP3 (ENSGALG00010023706) #22	NFE2L1 (ENSGALG00010021583) #24	CBX1 (ENSGALG00010021565) #25	SNX11 (ENSGALG00010021554) #26	SKAP1 (ENSGALG00010021479) #27	HOXB1 (ENSGALG00010023454) #28	HOXB2 (ENSGALG00010023438) #29	HOXB3 (ENSGALG00010023428) #31	HOXB4 (ENSGALG00010023415) #30	HOXB5 (ENSGALG00010023394) #32	HOXB6 (ENSGALG00010023383) #33	HOXB7 (ENSGALG00010023381) #34	HOXB8 (ENSGALG00010021446) #35	ENSGALG00010023374 #35	HOXB9 (ENSGALG00010026782) #36	HOXB13 (ENSGALG00010026052)
Turkey	MODERN SPECIES	951									OSBPL7 (ENSMGAG00000002368) #14	MRPL10 (ENSMGAG00000022761) #15	LRRC46 (ENSMGAG00000018266) #16	SCRN2 (ENSMGAG00000008023) #17	SP2 (ENSMGAG00000008043) #19	PNPO (ENSMGAG00000002670) #20	PRR15L (ENSMGAG00000016209) #21	CDK5RAP3 (ENSMGAG00000002616) #22
Neognathae_b	ANCESTRAL SPECIES	23	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Neognathae_c	ANCESTRAL SPECIES	26	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Golden eagle	MODERN SPECIES	24	SOCS7 (ENSACCG00020005201)	GPR179 (ENSACCG00020005244)	MRPL45 (ENSACCG00020005292)	NPEPPS (ENSACCG00020005314)	KPNB1 (ENSACCG00020005348)	TBKBP1 (ENSACCG00020005362)	TBX21 (ENSACCG00020005386)	OSBPL7 (ENSACCG00020005401) #14	MRPL10 (ENSACCG00020005421) #15	LRRC46 (ENSACCG00020005432) #16	SCRN2 (ENSACCG00020005452) #17	SP2 (ENSACCG00020005484) #19	ENSACCG00020005504	PNPO (ENSACCG00020005520) #20	PRR15L (ENSACCG00020005531) #21	CDK5RAP3 (ENSACCG00020005558) #22	ENSACCG00020005600	NFE2L1 (ENSACCG00020005624) #24	CBX1 (ENSACCG00020005635) #25	SNX11 (ENSACCG00020005654) #26	SKAP1 (ENSACCG00020005684) #27	ENSACCG00020005744	HOXB1 (ENSACCG00020005760) #28	HOXB2 (ENSACCG00020005767) #29	HOXB3 (ENSACCG00020005780) #31	HOXB4 (ENSACCG00020005789) #30	HOXB5 (ENSACCG00020005810) #32	HOXB6 (ENSACCG00020005822) #33	HOXB7 (ENSACCG00020005829) #34	HOXB8 (ENSACCG00020005840) #35	HOXB9 (ENSACCG00020005856) #36
Kakapo	MODERN SPECIES	12	GPR179 (ENSSHBG00005009413)	MRPL45 (ENSSHBG00005009448)	NPEPPS (ENSSHBG00005009482)	KPNB1 (ENSSHBG00005009532)	ENSSHBG00005009552	ENSSHBG00005009566	TBX21 (ENSSHBG00005009578)	OSBPL7 (ENSSHBG00005009643) #14	MRPL10 (ENSSHBG00005009737) #15	ENSSHBG00005009744 #16	SCRN2 (ENSSHBG00005009758) #17	SP6 (ENSSHBG00005009774) #18	SP2 (ENSSHBG00005009786) #19	PNPO (ENSSHBG00005009805) #20	PRR15L (ENSSHBG00005009820) #21	CDK5RAP3 (ENSSHBG00005009863) #22	ENSSHBG00005009936 ##24	ENSSHBG00005009950 #26	ENSSHBG00005009969	ENSSHBG00005009990	ENSSHBG00005010020	DLX3 (ENSSHBG00005010048)	ENSSHBG00005010082	ENSSHBG00005010109	FTSJ3 (ENSSHBG00005010153)	PSMC5 (ENSSHBG00005010198)	SMARCD2 (ENSSHBG00005010280)	ASIC2 (ENSSHBG00005010612)	ENSSHBG00005010657	CRHR1 (ENSSHBG00005010679)	ITGB3 (ENSSHBG00005010742)
Passeriformes	ANCESTRAL SPECIES	29	ENSGT00940000157982.b	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00940000172406	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000158988.a.b	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Passeriformes_d	ANCESTRAL SPECIES	25	ENSGT00940000157982.b.c	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00940000172406	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000158988.a.b	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Passeriformes_g	ANCESTRAL SPECIES	50	ENSGT00940000157961.C	ENSGT00940000157982.b.c	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00940000172406	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000158988.a.b	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Passeroidea	ANCESTRAL SPECIES	49	ENSGT00940000157961.C	ENSGT00940000157982.b.d	ENSGT00940000156314	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00940000172406	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000158988.a.b	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Zebra finch	MODERN SPECIES	20	ENSTGUG00000028017	SOCS7 (ENSTGUG00000003337)	GPR179 (ENSTGUG00000020188)	MRPL45 (ENSTGUG00000003330)	NPEPPS (ENSTGUG00000003339)	KPNB1 (ENSTGUG00000003387)	TBKBP1 (ENSTGUG00000026971)	ENSTGUG00000021058	ENSTGUG00000021758 #14	ENSTGUG00000028791 #14	ENSTGUG00000029748	SCRN2 (ENSTGUG00000021900) #17	SP6 (ENSTGUG00000027194) #18	SP2 (ENSTGUG00000024446) #19	PNPO (ENSTGUG00000027633) #20	CDK5RAP3 (ENSTGUG00000016909) #22	NFE2L1 (ENSTGUG00000014715) #24	ENSTGUG00000026594 #26	SKAP1 (ENSTGUG00000029482) #27	HOXB1 (ENSTGUG00000025694) #28	HOXB2 (ENSTGUG00000022054) #29	ENSTGUG00000021689	HOXB5 (ENSTGUG00000003430) #32	HOXB6 (ENSTGUG00000003435) #33	ENSTGUG00000020107 #34	HOXB8 (ENSTGUG00000003441) #35	HOXB9 (ENSTGUG00000003448) #36	ENSTGUG00000026217	ENSTGUG00000027404	UBE2Z (ENSTGUG00000027782)	ATP5MC1 (ENSTGUG00000026753)
Flycatcher	MODERN SPECIES	19	SLC35B1 (ENSFALG00000007148)	SPOP (ENSFALG00000007146)	NGFR (ENSFALG00000006987)	ENSFALG00000026685	ENSFALG00000028717	ENSFALG00000025180	PHB1 (ENSFALG00000006992)	ZNF652 (ENSFALG00000007003)	PHOSPHO1 (ENSFALG00000014803)	ENSFALG00000011344	ENSFALG00000025055	ENSFALG00000011366	ENSFALG00000025620	ENSFALG00000011385	ENSFALG00000011396	ENSFALG00000024750 #22	ENSFALG00000011429 #24	CBX1 (ENSFALG00000011444) #25	ENSFALG00000007898	ENSFALG00000028803	ENSFALG00000025142	ENSFALG00000000558	FBXL20 (ENSFALG00000000557)	MED1 (ENSFALG00000000555)	CDK12 (ENSFALG00000000553)	PPP1R1B (ENSFALG00000024719)	STARD3 (ENSFALG00000000541)	ENSFALG00000023757	PNMT (ENSFALG00000000536)	ENSFALG00000000535	ERBB2 (ENSFALG00000000513)
Australian saltwater crocodile	MODERN SPECIES	60				KPNB1 (ENSCPRG00005006998)	TBKBP1 (ENSCPRG00005007027)	TBX21 (ENSCPRG00005007057)	OSBPL7 (ENSCPRG00005007117) #14	MRPL10 (ENSCPRG00005007129) #15	LRRC46 (ENSCPRG00005007132) #16	SCRN2 (ENSCPRG00005007138) #17	SP6 (ENSCPRG00005007147) #18	SP2 (ENSCPRG00005007150) #19	ENSCPRG00005007151	PNPO (ENSCPRG00005007155) #20	PRR15L (ENSCPRG00005007160) #21	CDK5RAP3 (ENSCPRG00005007163) #22	COPZ2 (ENSCPRG00005007172) #23	NFE2L1 (ENSCPRG00005007178) #24	CBX1 (ENSCPRG00005007181) #25	SNX11 (ENSCPRG00005007185) #26	SKAP1 (ENSCPRG00005007201) #27	HOXB1 (ENSCPRG00005007211) #28	HOXB2 (ENSCPRG00005007216) #29	HOXB3 (ENSCPRG00005007217) #31	HOXB4 (ENSCPRG00005007218) #30	HOXB5 (ENSCPRG00005007222) #32	HOXB6 (ENSCPRG00005007226) #33	HOXB7 (ENSCPRG00005007234) #34	HOXB8 (ENSCPRG00005007236) #35	HOXB9 (ENSCPRG00005007240) #36	HOXB13 (ENSCPRG00005007259)
Cryptodira	ANCESTRAL SPECIES	23	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Testudinoidea	ANCESTRAL SPECIES	19	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Emydidae	ANCESTRAL SPECIES	26	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Three-toed box turtle	MODERN SPECIES	91	MRPL45 (ENSTMTG00000006838)	NPEPPS (ENSTMTG00000006865)	KPNB1 (ENSTMTG00000006930)	TBKBP1 (ENSTMTG00000006974)	TBX21 (ENSTMTG00000007000)	ENSTMTG00000007028 #14	ENSTMTG00000007063 #14	MRPL10 (ENSTMTG00000007114) #15	ENSTMTG00000007129	SCRN2 (ENSTMTG00000007144) #17	ENSTMTG00000007161 #18	SP2 (ENSTMTG00000007171) #19	ENSTMTG00000007188	PNPO (ENSTMTG00000007206) #20	PRR15L (ENSTMTG00000007217) #21	CDK5RAP3 (ENSTMTG00000007229) #22	COPZ2 (ENSTMTG00000007271) #23	NFE2L1 (ENSTMTG00000007320) #24	CBX1 (ENSTMTG00000007333) #25	SNX11 (ENSTMTG00000007347) #26	SKAP1 (ENSTMTG00000007393) #27	HOXB1 (ENSTMTG00000007622) #28	HOXB2 (ENSTMTG00000007640) #29	HOXB3 (ENSTMTG00000007653) #31	HOXB4 (ENSTMTG00000007660) #30	HOXB5 (ENSTMTG00000007666) #32	HOXB6 (ENSTMTG00000007672) #33	HOXB7 (ENSTMTG00000007684) #34	HOXB8 (ENSTMTG00000007693) #35	HOXB9 (ENSTMTG00000007702) #36	HOXB13 (ENSTMTG00000007711)
painted turtle	MODERN SPECIES	2394	ENSCPBG00000027434	MRPL45 (ENSCPBG00000027431)	NPEPPS (ENSCPBG00000027428)	KPNB1 (ENSCPBG00000027423)	ENSCPBG00000027421	TBX21 (ENSCPBG00000027414)	OSBPL7 (ENSCPBG00000027405) #14	MRPL10 (ENSCPBG00000027401) #15	LRRC46 (ENSCPBG00000027399) #16	SCRN2 (ENSCPBG00000027397) #17	SP6 (ENSCPBG00000027395) #18	SP2 (ENSCPBG00000027391) #19	ENSCPBG00000027388	PNPO (ENSCPBG00000027382) #20	PRR15L (ENSCPBG00000027380) #21	CDK5RAP3 (ENSCPBG00000027376) #22	COPZ2 (ENSCPBG00000027373) #23	NFE2L1 (ENSCPBG00000027369) #24	CBX1 (ENSCPBG00000027366) #25	SNX11 (ENSCPBG00000027362) #26	SKAP1 (ENSCPBG00000027357) #27	HOXB1 (ENSCPBG00000027354) #28	HOXB2 (ENSCPBG00000027352) #29	ENSCPBG00000027351	HOXB5 (ENSCPBG00000027349) #32	HOXB6 (ENSCPBG00000027348) #33	HOXB3 (ENSCPBG00000027344) #31	HOXB7 (ENSCPBG00000027341) #34	HOXB8 (ENSCPBG00000027340) #35	HOXB9 (ENSCPBG00000027339) #36	HOXB13 (ENSCPBG00000027335)
Testudinidae	ANCESTRAL SPECIES	24	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439 #14	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152.d #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000159029
Abingdon island giant tortoise	MODERN SPECIES	1609	ENSCABG00000002635	MRPL45 (ENSCABG00000002638)	NPEPPS (ENSCABG00000002641)	KPNB1 (ENSCABG00000002648)	TBKBP1 (ENSCABG00000002655)	TBX21 (ENSCABG00000002657)	OSBPL7 (ENSCABG00000002659) #14	MRPL10 (ENSCABG00000002666) #15	ENSCABG00000002668	SCRN2 (ENSCABG00000002671) #17	SP6 (ENSCABG00000002674) #18	SP2 (ENSCABG00000002675) #19	ENSCABG00000002677	PNPO (ENSCABG00000002678) #20	PRR15L (ENSCABG00000002679) #21	CDK5RAP3 (ENSCABG00000002680) #22	COPZ2 (ENSCABG00000002681) #23	NFE2L1 (ENSCABG00000002708) #24	CBX1 (ENSCABG00000002713) #25	SNX11 (ENSCABG00000002717) #26	SKAP1 (ENSCABG00000002721) #27	HOXB1 (ENSCABG00000002728) #28	HOXB2 (ENSCABG00000002731) #29	HOXB3 (ENSCABG00000002733) #31	HOXB4 (ENSCABG00000002736) #30	HOXB5 (ENSCABG00000002737) #32	HOXB6 (ENSCABG00000002738) #33	HOXB7 (ENSCABG00000002742) #34	HOXB8 (ENSCABG00000002750) #35	HOXB9 (ENSCABG00000002754) #36	HOXB13 (ENSCABG00000002758)
Goode s thornscrub tortoise	MODERN SPECIES	15	ENSGEVG00005016842	MRPL45 (ENSGEVG00005017007)	NPEPPS (ENSGEVG00005017041)	KPNB1 (ENSGEVG00005017083)	TBKBP1 (ENSGEVG00005017137)	TBX21 (ENSGEVG00005017193)	ENSGEVG00005017280 #14	ENSGEVG00005017409 #14	MRPL10 (ENSGEVG00005017446) #15	LRRC46 (ENSGEVG00005017463) #16	SCRN2 (ENSGEVG00005017480) #17	SP2 (ENSGEVG00005017526) #19	ENSGEVG00005017553	PNPO (ENSGEVG00005017569) #20	PRR15L (ENSGEVG00005017586) #21	CDK5RAP3 (ENSGEVG00005017600) #22	COPZ2 (ENSGEVG00005017626) #23	NFE2L1 (ENSGEVG00005017658) #24	CBX1 (ENSGEVG00005017682) #25	SNX11 (ENSGEVG00005017693) #26	SKAP1 (ENSGEVG00005017712) #27	HOXB1 (ENSGEVG00005017735) #28	HOXB2 (ENSGEVG00005017753) #29	HOXB3 (ENSGEVG00005017763) #31	HOXB4 (ENSGEVG00005017783) #30	HOXB5 (ENSGEVG00005017800) #32	HOXB6 (ENSGEVG00005017822) #33	HOXB7 (ENSGEVG00005017847) #34	HOXB8 (ENSGEVG00005017871) #35	HOXB9 (ENSGEVG00005017896) #36	HOXB13 (ENSGEVG00005017930)
Chinese turtle	MODERN SPECIES	1167				SOCS7 (ENSPSIG00000005627)	GPR179 (ENSPSIG00000007458)	MRPL45 (ENSPSIG00000008346)	NPEPPS (ENSPSIG00000008746)	KPNB1 (ENSPSIG00000009775)	ENSPSIG00000013582	MRPL10 (ENSPSIG00000013604) #15	LRRC46 (ENSPSIG00000014002) #16	SCRN2 (ENSPSIG00000004892) #17	SP2 (ENSPSIG00000005275) #19	PNPO (ENSPSIG00000005322) #20	PRR15L (ENSPSIG00000005485) #21	ENSPSIG00000005647 #22
Anura	ANCESTRAL SPECIES	15	ENSGT00940000155065.c	ENSGT00390000005949	ENSGT01100000263518.A.a.b	ENSGT00940000155246	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00390000000603 #15	ENSGT00940000161315 #16	ENSGT00390000013474.b.a #17	ENSGT00940000161498 #18	ENSGT00940000159590 #19	ENSGT00640000092844	ENSGT00390000011219 #20	ENSGT00940000154534.a #21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00940000154152 #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00950000183025.a
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000023810	ENSLLEG00000023877	KPNB1 (ENSLLEG00000024335)	ENSLLEG00000024653	TBKBP1 (ENSLLEG00000024678)	ENSLLEG00000024817	TBX21 (ENSLLEG00000024840)	ENSLLEG00000024888 #15	SCRN2 (ENSLLEG00000021262) #17	SP6 (ENSLLEG00000021323) #18	ENSLLEG00000021350	SP2 (ENSLLEG00000021414) #19	ENSLLEG00000021466	PNPO (ENSLLEG00000021591) #20	PRR15L (ENSLLEG00000022006) #21	CDK5RAP3 (ENSLLEG00000022067) #22	COPZ2 (ENSLLEG00000022282) #23	NFE2L1 (ENSLLEG00000022364) #24	CBX1 (ENSLLEG00000022470) #25	SNX11 (ENSLLEG00000022564) #26	SKAP1 (ENSLLEG00000022705) #27	HOXB1 (ENSLLEG00000023048) #28	HOXB2 (ENSLLEG00000023108) #29	HOXB3 (ENSLLEG00000023143) #31	ENSLLEG00000023190	HOXB5 (ENSLLEG00000023222) #32	HOXB6 (ENSLLEG00000023245) #33	HOXB7 (ENSLLEG00000023272) #34	HOXB8 (ENSLLEG00000023318) #35	HOXB9 (ENSLLEG00000023395) #36	ENSLLEG00000023455
Frog	MODERN SPECIES	1	arhgap23 (ENSXETG00000014740)	ENSXETG00000047667	srcin1 (ENSXETG00000014743)	ENSXETG00000039202	mllt6 (ENSXETG00000014744)	pcgf2 (ENSXETG00000014746)	ENSXETG00000047787	mrpl10 (ENSXETG00000014749) #15	tbx21 (ENSXETG00000041059)	lrrc46 (ENSXETG00000045741) #16	scrn2 (ENSXETG00000021947) #17	sp6 (ENSXETG00000048156) #18	ENSXETG00000043506	sp2 (ENSXETG00000021952) #19	XB5788060 [provisional] (ENSXETG00000027360)	cdk5rap3 (ENSXETG00000027359) #22	prr15l (ENSXETG00000032726) #21	copz2 (ENSXETG00000021957) #23	nfe2l1 (ENSXETG00000021958) #24	cbx1 (ENSXETG00000021962) #25	snx11 (ENSXETG00000038807) #26	skap1 (ENSXETG00000027357) #27	hoxb1 (ENSXETG00000049208) #28	hoxb2 (ENSXETG00000027353) #29	hoxb3 (ENSXETG00000021967) #31	hoxb4 (ENSXETG00000021973) #30	hoxb5 (ENSXETG00000021978) #32	hoxb6 (ENSXETG00000021987) #33	hoxb8 (ENSXETG00000021993) #35	hoxb9 (ENSXETG00000043711) #36	calcoco2 (ENSXETG00000022806)
Coelacanth	MODERN SPECIES	278							aspdh (ENSLACG00000001117)	CHCHD10 (ENSLACG00000001878)	SCRN2 (ENSLACG00000004181) #17	SP6 (ENSLACG00000004875) #18	SP2 (ENSLACG00000006434) #19	PNPO (ENSLACG00000007066) #20	PRR15L (ENSLACG00000007448) #21	ENSLACG00000007610	ENSLACG00000007611	CDK5RAP3 (ENSLACG00000007698) #22	COPZ2 (ENSLACG00000009416) #23	NFE2L1 (ENSLACG00000009960) #24	CBX1 (ENSLACG00000010753) #25	SNX11 (ENSLACG00000011068) #26	HOXB1 (ENSLACG00000014698) #28	HOXB2 (ENSLACG00000014790) #29	HOXB3 (ENSLACG00000014824) #31	ENSLACG00000014942	HOXB6 (ENSLACG00000014999) #33	HOXB7 (ENSLACG00000015078) #34	HOXB8 (ENSLACG00000015099) #35	HOXB9 (ENSLACG00000015129) #36	hoxb10a (ENSLACG00000015207)	HOXB13 (ENSLACG00000015543)	ENSLACG00000015759
Actinopterygii	ANCESTRAL SPECIES	60	ENSGT00940000161498 #18	ENSGT00390000013474.b.a #17	ENSGT00940000161315 #16	ENSGT00940000172406	ENSGT00940000157439 #14	ENSGT00940000166447	ENSGT00940000153704.B	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000159590 #19	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.b.b ##24	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152 #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Neopterygii	ANCESTRAL SPECIES	128													ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.b.b ##24	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152 #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354 #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36
Spotted gar	MODERN SPECIES	653	itga2b (ENSLOCG00000013257)	FAM171A2 (ENSLOCG00000013275)	slc25a39 (ENSLOCG00000013283)	ENSLOCG00000013294	kat7b (ENSLOCG00000013296)	ENSLOCG00000013301	dlx4b (ENSLOCG00000013307)	dlx3b (ENSLOCG00000013312)	itga3b (ENSLOCG00000013315)	tbx21 (ENSLOCG00000013335)	TBKBP1 (ENSLOCG00000013343)	pdk2b (ENSLOCG00000013349)	osbpl7 (ENSLOCG00000013354) #14	mrpl10 (ENSLOCG00000013385) #15	pnpo (ENSLOCG00000013387) #20	cdk5rap3 (ENSLOCG00000013394) #22	copz2 (ENSLOCG00000013403) #23	NFE2L1 (ENSLOCG00000013411) ##24	cbx1b (ENSLOCG00000013417) #25	snx11 (ENSLOCG00000013423) #26	skap1 (ENSLOCG00000013427) #27	HOXB1 (ENSLOCG00000013432) #28	hoxb3a (ENSLOCG00000013436) #31	hoxb5b (ENSLOCG00000013440) #32	hoxb6a (ENSLOCG00000013443) #33	hoxb7a (ENSLOCG00000013448) #34	hoxb8a (ENSLOCG00000013451) #35	hoxb9a (ENSLOCG00000013453) #36	hoxb10a (ENSLOCG00000013455)	hoxb13a (ENSLOCG00000013457)	ENSLOCG00000013460
Osteoglossocephalai	ANCESTRAL SPECIES	41	ENSGT00940000155510	ENSGT00940000157917.a.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00940000160113 #26	ENSGT00940000154152.a #25	ENSGT00390000017856.b #27	ENSGT00940000166856	ENSGT00940000155029.c.b #29	ENSGT00940000159774 #31	ENSGT00940000162072 #30	ENSGT00940000158354.c #32	ENSGT00940000158354.d #32	ENSGT00940000161108 #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386 #36	ENSGT00940000163268.e
Osteoglossiformes	ANCESTRAL SPECIES	43	ENSGT00940000155510	ENSGT00940000157917.a.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.a ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00940000157439.a #14	ENSGT00390000004405.b #23	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000166856	ENSGT00940000155029.c.b.b #29	ENSGT00940000159774.b.a #31	ENSGT00940000162072 #30	ENSGT00940000158354.c #32	ENSGT00940000161108.b #33	ENSGT00940000161230 #34	ENSGT00940000161529 #35	ENSGT00940000161386.a #36
P. kingsleyae	MODERN SPECIES	140	thraa (ENSPKIG00000001202)	ormdl3 (ENSPKIG00000001166)	wnt3 (ENSPKIG00000001145)	nsfb (ENSPKIG00000001091)	psmd11b (ENSPKIG00000001035)	cdk5r1b (ENSPKIG00000001019)	MYO1D (ENSPKIG00000000999)	ENSPKIG00000000976	PDK2 (ENSPKIG00000000931)	ENSPKIG00000000901	tbx21 (ENSPKIG00000000866)	osbpl7 (ENSPKIG00000000792) #14	mrpl10 (ENSPKIG00000000749) #15	pnpo (ENSPKIG00000000733) #20	prr15la (ENSPKIG00000000717) ##21	cdk5rap3 (ENSPKIG00000000684) #22	ENSPKIG00000000651	copz2 (ENSPKIG00000000610) #23	NFE2L1 (ENSPKIG00000000547) ##24	skap1 (ENSPKIG00000000481) #27	hoxb1a (ENSPKIG00000000454)	hoxb2a (ENSPKIG00000000447) #29	hoxb3a (ENSPKIG00000000431) #31	hoxb4a (ENSPKIG00000000416) #30	hoxb5b (ENSPKIG00000000411) #32	hoxb6a (ENSPKIG00000000403) #33	hoxb7a (ENSPKIG00000000397) #34	hoxb8a (ENSPKIG00000000388) #35	hoxb9a (ENSPKIG00000023117) #36	hoxb13a (ENSPKIG00000023111)	ENSPKIG00000023104
Asian bonytongue	MODERN SPECIES	13	ENSSFOG00015000434	ormdl3 (ENSSFOG00015000476)	wnt3 (ENSSFOG00015000492)	nsfb (ENSSFOG00015000512)	ENSSFOG00015025854	psmd11b (ENSSFOG00015000603)	cdk5r1b (ENSSFOG00015030884)	MYO1D (ENSSFOG00015000681)	PDK2 (ENSSFOG00015000764)	TBKBP1 (ENSSFOG00015000820)	tbx21 (ENSSFOG00015028517)	osbpl7 (ENSSFOG00015001331) #14	mrpl10 (ENSSFOG00015001414) #15	pnpo (ENSSFOG00015029234) #20	prr15la (ENSSFOG00015001431) ##21	cdk5rap3 (ENSSFOG00015001461) #22	ENSSFOG00015001531	COPZ2 (ENSSFOG00015001561) #23	NFE2L1 (ENSSFOG00015001617) ##24	snx11 (ENSSFOG00015001657) #26	skap1 (ENSSFOG00015001828) #27	hoxb1a (ENSSFOG00015001903)	ENSSFOG00015001958	HOXB2 (ENSSFOG00015001984) #29	hoxb3a (ENSSFOG00015033106) #31	hoxb4a (ENSSFOG00015002053) #30	hoxb5b (ENSSFOG00015002080) #32	HOXB6 (ENSSFOG00015028231) #33	hoxb7a (ENSSFOG00015002134) #34	HOXB8 (ENSSFOG00015028715) #35	hoxb9a (ENSSFOG00015002339) #36
Clupeocephala	ANCESTRAL SPECIES	43	ENSGT00940000157917.a.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00950000182844.b.b.b.b	ENSGT00940000165637
Euteleosteomorpha	ANCESTRAL SPECIES	101	ENSGT00940000155510	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000005121	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00940000161032
Protacanthopterygii	ANCESTRAL SPECIES	100	ENSGT00940000157917.a.a.a	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000005121	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00940000161032
Salmoninae	ANCESTRAL SPECIES	23	ENSGT00940000157917.a.a.a.a	ENSGT00950000183178.b.b.b.c.a	ENSGT00940000157854.w.b	ENSGT00530000064085.c.d	ENSGT00530000063301.a.a.c.a.f	ENSGT00390000008812.b.b.a.a.b	ENSGT00940000157411.j	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c.c	ENSGT00940000166447.c	ENSGT00940000157439.b.d #14	ENSGT00390000000603 #15	ENSGT00390000011219.m.a #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a.d ##24	ENSGT00940000154152.a.a.b #25	ENSGT00940000160113.l #26	ENSGT00390000017856.b.d #27	ENSGT00940000159503 #28	ENSGT00940000159774.d #31	ENSGT00940000158354.c.a.d #32	ENSGT00940000165065.b.d	ENSGT00940000161529.x #35	ENSGT00940000165637	ENSGT00950000183025.a.eb	ENSGT00390000007843.c	ENSGT00940000177404.a	ENSGT00390000018292.c.d
Huchen	MODERN SPECIES	15				ENSHHUG00000038269	psmd11b (ENSHHUG00000038586)	cdk5r1b (ENSHHUG00000038736)	ENSHHUG00000038746	ENSHHUG00000038905	PDK2 (ENSHHUG00000038929)	TBKBP1 (ENSHHUG00000039100)	tbx21 (ENSHHUG00000039104)	osbpl7 (ENSHHUG00000039118) #14	mrpl10 (ENSHHUG00000039277) #15	pnpo (ENSHHUG00000039280) #20	prr15lb (ENSHHUG00000039309) ##21	cdk5rap3 (ENSHHUG00000039313) #22	NFE2L1 (ENSHHUG00000039332) ##24	ENSHHUG00000039337 #25	SNX11 (ENSHHUG00000039351) #26	skap1 (ENSHHUG00000039362) #27	hoxb1b (ENSHHUG00000039377) #28	ENSHHUG00000039378 #31	hoxb5b (ENSHHUG00000039381) #32	hoxb6b (ENSHHUG00000039384)	hoxb8b (ENSHHUG00000039387) #35	ttll6 (ENSHHUG00000039397)	calcoco2 (ENSHHUG00000039430)	snf8 (ENSHHUG00000039450)	ENSHHUG00000039469	MSL1 (ENSHHUG00000039473)	chmp2a (ENSHHUG00000039506)
Salmoninae_a	ANCESTRAL SPECIES	17	ENSGT00940000157917.a.a.a.a	ENSGT00950000183178.b.b.b.c.a	ENSGT00940000157854.w.b	ENSGT00530000064085.c.d	ENSGT00530000063301.a.a.c.a.f	ENSGT00390000008812.b.b.a.a.b	ENSGT00940000157411.j	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c.c	ENSGT00940000166447.c	ENSGT00940000157439.b.d #14	ENSGT00390000000603 #15	ENSGT00390000011219.m.a #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a.d ##24	ENSGT00940000154152.a.a.b #25	ENSGT00940000160113.l #26	ENSGT00390000017856.b.d #27	ENSGT00940000159503 #28	ENSGT00940000159774.d.a #31	ENSGT00940000158354.c.a.d #32	ENSGT00940000165065.b.d	ENSGT00940000161529.x #35	ENSGT00940000165637	ENSGT00950000183025.a.eb	ENSGT00390000007843.c	ENSGT00390000005121.f	ENSGT00940000177404.a
Salmo	ANCESTRAL SPECIES	3	ENSGT00940000157917.a.a.a.a	ENSGT00950000183178.b.b.b.c.a	ENSGT00940000157854.w.b	ENSGT00530000064085.c.d	ENSGT00530000063301.a.a.c.a.f	ENSGT00390000008812.b.b.a.a.b	ENSGT00940000157411.j	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c.c	ENSGT00940000166447.c	ENSGT00940000157439.b.d #14	ENSGT00390000000603 #15	ENSGT00390000011219.m.a #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a.d ##24	ENSGT00940000154152.a.a.b #25	ENSGT00940000160113.l #26	ENSGT00390000017856.b.d #27	ENSGT00940000159503 #28	ENSGT00940000159774.d.a #31	ENSGT00940000158354.c.a.d #32	ENSGT00940000161108.f #33	ENSGT00940000161529.x #35	ENSGT00940000165637	ENSGT00950000183025.a.eb	ENSGT00390000007843.c	ENSGT00390000005121.f	ENSGT00390000018292.c.d	ENSGT00950000182832.A.d
River trout	MODERN SPECIES	11	THRA (ENSSTUG00000034118)	ormdl3 (ENSSTUG00000035643)	wnt3 (ENSSTUG00000035650)	nsfb (ENSSTUG00000035705)	psmd11b (ENSSTUG00000035992)	cdk5r1b (ENSSTUG00000036065)	ENSSTUG00000036115	ENSSTUG00000037229	PDK2 (ENSSTUG00000037271)	TBKBP1 (ENSSTUG00000037653)	tbx21 (ENSSTUG00000037670)	osbpl7 (ENSSTUG00000037693) #14	mrpl10 (ENSSTUG00000037910) #15	pnpo (ENSSTUG00000037917) #20	prr15lb (ENSSTUG00000037963) ##21	cdk5rap3 (ENSSTUG00000037968) #22	NFE2L1 (ENSSTUG00000038035) ##24	ENSSTUG00000038049 #25	SNX11 (ENSSTUG00000038070) #26	skap1 (ENSSTUG00000038088) #27	hoxb1b (ENSSTUG00000038136) #28	ENSSTUG00000038149 #31	hoxb5b (ENSSTUG00000038154) #32	HOXB6 (ENSSTUG00000038160) #33	hoxb8b (ENSSTUG00000038168) #35	ttll6 (ENSSTUG00000038182)	calcoco2 (ENSSTUG00000038298)	snf8 (ENSSTUG00000038331)	gip (ENSSTUG00000038402)	MSL1 (ENSSTUG00000038414)	chmp2a (ENSSTUG00000038508)
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000076909	ormdl3 (ENSSSAG00000105314)	wnt3 (ENSSSAG00000077501)	nsfb (ENSSSAG00000077571)	psmd11b (ENSSSAG00000078688)	cdk5r1b (ENSSSAG00000101629)	ENSSSAG00000006495	ENSSSAG00000100824	ENSSSAG00000083346	TBKBP1 (ENSSSAG00000096340)	tbx21 (ENSSSAG00000015324)	osbpl7 (ENSSSAG00000015453) #14	pnpo (ENSSSAG00000029666) #20	mrpl10 (ENSSSAG00000104339) #15	prr15lb (ENSSSAG00000106114) ##21	cdk5rap3 (ENSSSAG00000030149) #22	NFE2L1 (ENSSSAG00000114824) ##24	ENSSSAG00000030773 #25	snx11 (ENSSSAG00000031221) #26	skap1 (ENSSSAG00000031353) #27	HoxB1ba (ENSSSAG00000109797) #28	hoxb5b (ENSSSAG00000112500) #32	hoxb8ba (ENSSSAG00000031831) #35	ttll6 (ENSSSAG00000032126)	ENSSSAG00000032869	snf8 (ENSSSAG00000033130)	ENSSSAG00000033744	chmp2a (ENSSSAG00000036161)	ENSSSAG00000101134	ENSSSAG00000039094	ENSSSAG00000066437
Oncorhynchus	ANCESTRAL SPECIES	26	ENSGT00940000155510.u.b	ENSGT00940000157917.a.a.a.a	ENSGT00950000183178.b.b.b.c.a	ENSGT00940000157854.w.b	ENSGT00530000064085.c.d	ENSGT00530000063301.a.a.c.a.f	ENSGT00390000008812.b.b.a.a.b	ENSGT00940000157411.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c.c	ENSGT00940000166447.c	ENSGT00940000157439.b.d #14	ENSGT00390000000603 #15	ENSGT00390000011219.m.a #20	ENSGT00940000154534.b.b.c ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a.d ##24	ENSGT00940000154152.a.a.b #25	ENSGT00940000160113.l #26	ENSGT00390000017856.b.d #27	ENSGT00940000159503 #28	ENSGT00940000159774.d.a #31	ENSGT00940000158354.c.a.d #32	ENSGT00940000165065.b.d	ENSGT00940000161529.x #35	ENSGT00940000165637	ENSGT00950000183025.a.eb	ENSGT00390000007843.c	ENSGT00390000005121.f	ENSGT00940000177404.a
Oncorhynchus_a	ANCESTRAL SPECIES	21	ENSGT00940000155510.u.b	ENSGT00940000157917.a.a.a.a	ENSGT00950000183178.b.b.b.c.a	ENSGT00940000157854.w.b	ENSGT00530000064085.c.d	ENSGT00530000063301.a.a.c.a.f	ENSGT00390000008812.b.b.a.a.b	ENSGT00940000157411.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c.c	ENSGT00940000166447.c	ENSGT00940000157439.b.d #14	ENSGT00390000000603 #15	ENSGT00390000011219.m.a #20	ENSGT00940000154534.b.b.c ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a.d ##24	ENSGT00940000154152.a.a.b #25	ENSGT00940000160113.l #26	ENSGT00390000017856.b.d #27	ENSGT00940000159503 #28	ENSGT00940000159774.d.a #31	ENSGT00940000158354.c.a.d #32	ENSGT00940000165065.b.d	ENSGT00940000161529.x #35	ENSGT00940000165637	ENSGT00950000183025.a.eb	ENSGT00390000007843.c	ENSGT00390000005121.f	ENSGT00940000177404.a
Chinook salmon	MODERN SPECIES	16	wdfy2 (ENSOTSG00005045546)	mab21l3 (ENSOTSG00005035115)	ENSOTSG00005035116	ENSOTSG00005035117	ARSD (ENSOTSG00005035118)	ENSOTSG00005035120	akap17a (ENSOTSG00005035121)	ENSOTSG00005035123	ENSOTSG00005035124	ENSOTSG00005035125	tbx21 (ENSOTSG00005035126)	osbpl7 (ENSOTSG00005035132) #14	mrpl10 (ENSOTSG00005035800) #15	pnpo (ENSOTSG00005035801) #20	prr15lb (ENSOTSG00005035803) ##21	cdk5rap3 (ENSOTSG00005035804) #22	ENSOTSG00005035807	NFE2L1 (ENSOTSG00005035808) ##24	ENSOTSG00005035809 #25	SNX11 (ENSOTSG00005035810) #26	skap1 (ENSOTSG00005035812) #27	hoxb1b (ENSOTSG00005035813) #28	ENSOTSG00005035814 #31	hoxb5b (ENSOTSG00005035815) #32	hoxb6b (ENSOTSG00005035816)	hoxb8b (ENSOTSG00005035817) #35	ttll6 (ENSOTSG00005035818)	calcoco2 (ENSOTSG00005035821)	snf8 (ENSOTSG00005035823)	ENSOTSG00005035824	MSL1 (ENSOTSG00005035826)
Coho salmon	MODERN SPECIES	12	THRA (ENSOKIG00005008207)	ENSOKIG00005008540	ormdl3 (ENSOKIG00005008553)	wnt3 (ENSOKIG00005008567)	nsfb (ENSOKIG00005008716)	psmd11b (ENSOKIG00005010937)	cdk5r1b (ENSOKIG00005011007)	ENSOKIG00005011062	PDK2 (ENSOKIG00005012119)	TBKBP1 (ENSOKIG00005012307)	tbx21 (ENSOKIG00005012316)	osbpl7 (ENSOKIG00005012334) #14	mrpl10 (ENSOKIG00005012380) #15	pnpo (ENSOKIG00005012392) #20	prr15lb (ENSOKIG00005012462) ##21	cdk5rap3 (ENSOKIG00005012472) #22	NFE2L1 (ENSOKIG00005012519) ##24	ENSOKIG00005012530 #25	SNX11 (ENSOKIG00005012548) #26	skap1 (ENSOKIG00005012565) #27	hoxb1b (ENSOKIG00005012579) #28	ENSOKIG00005012606 #31	hoxb5b (ENSOKIG00005012615) #32	hoxb6b (ENSOKIG00005012621)	hoxb8b (ENSOKIG00005012631) #35	ttll6 (ENSOKIG00005012645)	calcoco2 (ENSOKIG00005012687)	snf8 (ENSOKIG00005012719)	ENSOKIG00005012753	gip (ENSOKIG00005012759)	MSL1 (ENSOKIG00005012768)
Rainbow trout	MODERN SPECIES	7	ormdl3 (ENSOMYG00000042161)	wnt3 (ENSOMYG00000042177)	nsfb (ENSOMYG00000042291)	psmd11b (ENSOMYG00000042895)	cdk5r1b (ENSOMYG00000042908)	ENSOMYG00000042956	ENSOMYG00000065805	ENSOMYG00000043223	ENSOMYG00000043255	TBKBP1 (ENSOMYG00000043446)	tbx21 (ENSOMYG00000043454)	osbpl7 (ENSOMYG00000043504) #14	mrpl10 (ENSOMYG00000043590) #15	pnpo (ENSOMYG00000043606) #20	prr15lb (ENSOMYG00000043621) ##21	cdk5rap3 (ENSOMYG00000043627) #22	ENSOMYG00000043634	NFE2L1 (ENSOMYG00000043639) ##24	ENSOMYG00000043649 #25	SNX11 (ENSOMYG00000043658) #26	skap1 (ENSOMYG00000043667) #27	hoxb1b (ENSOMYG00000057636) #28	ENSOMYG00000043673 #31	hoxb5b (ENSOMYG00000043678) #32	hoxb6b (ENSOMYG00000043680)	hoxb8b (ENSOMYG00000043684) #35	ttll6 (ENSOMYG00000060738)	ENSOMYG00000043692	ENSOMYG00000043726	ENSOMYG00000043748	ENSOMYG00000043763
Northern pike	MODERN SPECIES	4	THRA (ENSELUG00000008043)	ormdl3 (ENSELUG00000008099)	wnt3 (ENSELUG00000008126)	nsfb (ENSELUG00000008162)	psmd11b (ENSELUG00000008204)	cdk5r1b (ENSELUG00000008224)	MYO1D (ENSELUG00000008245)	ENSELUG00000008271	PDK2 (ENSELUG00000008326)	TBKBP1 (ENSELUG00000008379)	ENSELUG00000027949	tbx21 (ENSELUG00000001384)	osbpl7 (ENSELUG00000008527) #14	pnpo (ENSELUG00000008568) #20	mrpl10 (ENSELUG00000008599) #15	cdk5rap3 (ENSELUG00000008635) #22	NFE2L1 (ENSELUG00000008672) ##24	ENSELUG00000000330 #25	ENSELUG00000008701 #26	skap1 (ENSELUG00000001494) #27	ENSELUG00000008758	ENSELUG00000008764 #31	hoxb6b (ENSELUG00000025410)	hoxb5b (ENSELUG00000008806) #32	ttll6 (ENSELUG00000008833)	ENSELUG00000008892	snf8 (ENSELUG00000008940)	ENSELUG00000008959	MSL1 (ENSELUG00000008996)	chmp2a (ENSELUG00000009057)	ENSELUG00000009092
Acanthomorphata	ANCESTRAL SPECIES	12	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Cod	MODERN SPECIES	9	MED1 (ENSGMOG00000031087)	ENSGMOG00000026756	ENSGMOG00000027135	ENSGMOG00000027386	ENSGMOG00000004534	ENSGMOG00000004560	ENSGMOG00000028175	ENSGMOG00000032746	ENSGMOG00000028389	ENSGMOG00000025608	ENSGMOG00000002812	ENSGMOG00000002841	mrpl10 (ENSGMOG00000003023) #15	pnpo (ENSGMOG00000003037) #20	ENSGMOG00000020150 ##21	cdk5rap3 (ENSGMOG00000003054) #22	NFE2L1 (ENSGMOG00000022643) ##24	CBX1 (ENSGMOG00000003101) #25	ENSGMOG00000024709 #26	skap1 (ENSGMOG00000003134) #27	hoxb1b (ENSGMOG00000025533) #28	ENSGMOG00000027605 #31	hoxb5b (ENSGMOG00000026296) #32	hoxb6b (ENSGMOG00000025558)	ENSGMOG00000003213	ENSGMOG00000003246	ENSGMOG00000003261	chmp2a (ENSGMOG00000003295)	ENSGMOG00000003314	ENSGMOG00000034695	ENSGMOG00000003499
Euacanthomorphacea	ANCESTRAL SPECIES	21	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Pinecone sodierfish	MODERN SPECIES	10	THRA (ENSMMDG00005013831)	ormdl3 (ENSMMDG00005013793)	wnt3 (ENSMMDG00005013783)	nsfb (ENSMMDG00005010010)	psmd11b (ENSMMDG00005009924)	cdk5r1b (ENSMMDG00005009918)	MYO1D (ENSMMDG00005006560)	ENSMMDG00005006517	PDK2 (ENSMMDG00005005899)	ENSMMDG00005005852	tbx21 (ENSMMDG00005005843)	osbpl7 (ENSMMDG00005005835) #14	mrpl10 (ENSMMDG00005005826) #15	pnpo (ENSMMDG00005005812) #20	prr15lb (ENSMMDG00005005803) ##21	cdk5rap3 (ENSMMDG00005005179) #22	NFE2L1 (ENSMMDG00005005166) ##24	CBX1 (ENSMMDG00005005163) #25	ENSMMDG00005005159 #26	skap1 (ENSMMDG00005005155) #27	hoxb1b (ENSMMDG00005005153) #28	ENSMMDG00005005152	hoxb6b (ENSMMDG00005005148)	ttll6 (ENSMMDG00005005139)	calcoco2 (ENSMMDG00005005132)	snf8 (ENSMMDG00005005122)	ENSMMDG00005005117	ENSMMDG00005005101	chmp2a (ENSMMDG00005005093)	ENSMMDG00005005087	ENSMMDG00005005026
Percomorphaceae	ANCESTRAL SPECIES	21	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Tiger tail seahorse	MODERN SPECIES	360	PRR35 (ENSHCOG00000004527)	crp2 (ENSHCOG00000004509)	stub1 (ENSHCOG00000004497)	ENSHCOG00000004483	metrn (ENSHCOG00000004471)	IFT140 (ENSHCOG00000004459)	tmem204 (ENSHCOG00000004436)	ENSHCOG00000004427	telo2 (ENSHCOG00000004377)	rab11fip3 (ENSHCOG00000004093)	decr2 (ENSHCOG00000004078)	RDH13 (ENSHCOG00000004067)	SBK1 (ENSHCOG00000004060)	ENSHCOG00000004044	prr15lb (ENSHCOG00000004032) ##21	cdk5rap3 (ENSHCOG00000004014) #22	NFE2L1 (ENSHCOG00000003983) ##24	CBX1 (ENSHCOG00000003968) #25	SNX11 (ENSHCOG00000003936) #26	skap1 (ENSHCOG00000003822) #27	hoxb1b (ENSHCOG00000003796) #28	ENSHCOG00000003788 #31	hoxb5b (ENSHCOG00000003783) #32	hoxb6b (ENSHCOG00000003774)	ENSHCOG00000003764	ENSHCOG00000003750	snf8 (ENSHCOG00000003713)	ENSHCOG00000003694	chmp2a (ENSHCOG00000003680)	ENSHCOG00000003665	ENSHCOG00000003660
Percomorphaceae_B	ANCESTRAL SPECIES	23	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Tetraodontidae	ANCESTRAL SPECIES	23	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000159774 #31	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Tetraodon	MODERN SPECIES	13	psmd11b (ENSTNIG00000004136)	ENSTNIG00000006979	ENSTNIG00000003353	wnt3 (ENSTNIG00000006063)	nsfb (ENSTNIG00000006062)	psmd11b (ENSTNIG00000006061)	MYO1D (ENSTNIG00000019513)	ENSTNIG00000019512	ENSTNIG00000016967	PDK2 (ENSTNIG00000016966)	TBKBP1 (ENSTNIG00000016965)	tbx21 (ENSTNIG00000010103)	osbpl7 (ENSTNIG00000010102) #14	mrpl10 (ENSTNIG00000010101) #15	pnpo (ENSTNIG00000010100) #20	cdk5rap3 (ENSTNIG00000010099) #22	NFE2L1 (ENSTNIG00000010098) ##24	CBX1 (ENSTNIG00000010097) #25	ENSTNIG00000010096 #26	skap1 (ENSTNIG00000010095) #27	hoxb1b (ENSTNIG00000010094) #28	ENSTNIG00000010093 #31	hoxb5b (ENSTNIG00000001770) #32	hoxb6b (ENSTNIG00000001771)	ttll6 (ENSTNIG00000010092)	snf8 (ENSTNIG00000010091)	MSL1 (ENSTNIG00000010090)	chmp2a (ENSTNIG00000010089)	ENSTNIG00000010088	ENSTNIG00000010087	ENSTNIG00000010086
Fugu	MODERN SPECIES		ENSTRUG00000004063	ormdl3 (ENSTRUG00000033478)	nsfb (ENSTRUG00000002989)	wnt3 (ENSTRUG00000003564)	psmd11b (ENSTRUG00000002031)	cdk5r1b (ENSTRUG00000001984)	MYO1D (ENSTRUG00000013296)	ENSTRUG00000013295	PDK2 (ENSTRUG00000013086)	TBKBP1 (ENSTRUG00000013045)	tbx21 (ENSTRUG00000012995)	osbpl7 (ENSTRUG00000012593) #14	Mrpl10 (ENSTRUG00000020176) #15	pnpo (ENSTRUG00000012477) #20	prr15lb (ENSTRUG00000012473) ##21	cdk5rap3 (ENSTRUG00000012311) #22	NFE2L1 (ENSTRUG00000012259) ##24	ENSTRUG00000012171 #26	CBX1 (ENSTRUG00000012203) #25	skap1 (ENSTRUG00000026027) #27	ENSTRUG00000012061	ENSTRUG00000030786 #31	hoxb5b (ENSTRUG00000025198) #32	hoxb6b (ENSTRUG00000011945)	ttll6 (ENSTRUG00000011934)	ENSTRUG00000011902	snf8 (ENSTRUG00000011822)	MSL1 (ENSTRUG00000024472)	chmp2a (ENSTRUG00000011739)	ENSTRUG00000011737	ENSTRUG00000023096
Eupecaria_A	ANCESTRAL SPECIES	22	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Ballan wrasse	MODERN SPECIES	344								ENSLBEG00000010776	PDK2 (ENSLBEG00000010710)	TBKBP1 (ENSLBEG00000010668)	tbx21 (ENSLBEG00000010629)	osbpl7 (ENSLBEG00000010551) #14	mrpl10 (ENSLBEG00000010523) #15	pnpo (ENSLBEG00000010484) #20	prr15lb (ENSLBEG00000010458) ##21	cdk5rap3 (ENSLBEG00000010206) #22	NFE2L1 (ENSLBEG00000010104) ##24	CBX1 (ENSLBEG00000010074) #25	SNX11 (ENSLBEG00000009957) #26	skap1 (ENSLBEG00000009887) #27	hoxb1b (ENSLBEG00000009870) #28	ENSLBEG00000009839 #31	hoxb5b (ENSLBEG00000009819) #32	hoxb6b (ENSLBEG00000009789)	ttll6 (ENSLBEG00000009760)	ENSLBEG00000009732	snf8 (ENSLBEG00000009676)	ENSLBEG00000009643	chmp2a (ENSLBEG00000009604)	MRM1 (ENSLBEG00000009581)	ENSLBEG00000009530
Eupecaria_B	ANCESTRAL SPECIES	22	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Eupecaria_C	ANCESTRAL SPECIES	23	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	27	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
European seabass	MODERN SPECIES	11	DHX8 (ENSDLAG00005021007)	ENSDLAG00005021583	ORMDL3 (ENSDLAG00005028232)	ENSDLAG00005022067	nsfb (ENSDLAG00005022119)	psmd11b (ENSDLAG00005023007)	cdk5r1b (ENSDLAG00005033472)	ENSDLAG00005023075	PDK2 (ENSDLAG00005023763)	TBKBP1 (ENSDLAG00005023823)	tbx21 (ENSDLAG00005028790)	osbpl7 (ENSDLAG00005023883) #14	mrpl10 (ENSDLAG00005024317) #15	PNPO (ENSDLAG00005028589) #20	prr15lb (ENSDLAG00005024323) ##21	cdk5rap3 (ENSDLAG00005024327) #22	NFE2L1 (ENSDLAG00005024374) ##24	CBX1 (ENSDLAG00005032953) #25	ENSDLAG00005024382 #26	skap1 (ENSDLAG00005024386) #27	HOXB1B (ENSDLAG00005027264) #28	hoxb5b (ENSDLAG00005024397) #32	hoxb6b (ENSDLAG00005024398)	ttll6 (ENSDLAG00005024402)	ENSDLAG00005024408	ENSDLAG00005031472	ENSDLAG00005028069	ENSDLAG00005024423	ENSDLAG00005031067	ENSDLAG00005024443	ENSDLAG00005024445
Large yellow croaker	MODERN SPECIES	488	DHX8 (ENSLCRG00005019699)	ENSLCRG00005019915	ormdl3 (ENSLCRG00005019976)	wnt3 (ENSLCRG00005019977)	nsfb (ENSLCRG00005019982)	psmd11b (ENSLCRG00005020186)	cdk5r1b (ENSLCRG00005020192)	MYO1D (ENSLCRG00005020222)	PDK2 (ENSLCRG00005021308)	TBKBP1 (ENSLCRG00005021562)	tbx21 (ENSLCRG00005021564)	osbpl7 (ENSLCRG00005021566) #14	mrpl10 (ENSLCRG00005021573) #15	pnpo (ENSLCRG00005021575) #20	prr15lb (ENSLCRG00005021577) ##21	cdk5rap3 (ENSLCRG00005021579) #22	ENSLCRG00005021596	NFE2L1 (ENSLCRG00005021600) ##24	CBX1 (ENSLCRG00005021602) #25	ENSLCRG00005021604 #26	skap1 (ENSLCRG00005021605) #27	ENSLCRG00005021608	ENSLCRG00005021611	hoxb5b (ENSLCRG00005021615) #32	hoxb6b (ENSLCRG00005021618)	ttll6 (ENSLCRG00005021621)	ENSLCRG00005021627	snf8 (ENSLCRG00005021629)	ENSLCRG00005021632	ENSLCRG00005021633	chmp2a (ENSLCRG00005021639)
Gilthead seabream	MODERN SPECIES	12	etv4 (ENSSAUG00010021764)	DHX8 (ENSSAUG00010021438)	ENSSAUG00010021095	ormdl3 (ENSSAUG00010021079)	wnt3 (ENSSAUG00010021075)	nsfb (ENSSAUG00010021013)	psmd11b (ENSSAUG00010021008)	MYO1D (ENSSAUG00010018393)	PDK2 (ENSSAUG00010017649)	TBKBP1 (ENSSAUG00010017641)	tbx21 (ENSSAUG00010017639)	osbpl7 (ENSSAUG00010017241) #14	mrpl10 (ENSSAUG00010017224) #15	pnpo (ENSSAUG00010017223) #20	prr15lb (ENSSAUG00010017220) ##21	cdk5rap3 (ENSSAUG00010016901) #22	NFE2L1 (ENSSAUG00010016897) ##24	CBX1 (ENSSAUG00010016894) #25	ENSSAUG00010016891 #26	skap1 (ENSSAUG00010016888) #27	hoxb1b (ENSSAUG00010016886) #28	ENSSAUG00010016884 #31	hoxb5b (ENSSAUG00010016882) #32	hoxb6b (ENSSAUG00010016881)	ttll6 (ENSSAUG00010016862)	ENSSAUG00010016858	snf8 (ENSSAUG00010016854)	ENSSAUG00010016852	ENSSAUG00010016849	chmp2a (ENSSAUG00010016846)	ENSSAUG00010016845
Perciformes	ANCESTRAL SPECIES	9	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Pike perch	MODERN SPECIES	3	DHX8 (ENSSLUG00000010748)	ENSSLUG00000010297	ormdl3 (ENSSLUG00000010244)	wnt3 (ENSSLUG00000010232)	nsfb (ENSSLUG00000008134)	psmd11b (ENSSLUG00000007981)	cdk5r1b (ENSSLUG00000007967)	MYO1D (ENSSLUG00000007767)	PDK2 (ENSSLUG00000007518)	TBKBP1 (ENSSLUG00000007453)	tbx21 (ENSSLUG00000007445)	osbpl7 (ENSSLUG00000007402) #14	mrpl10 (ENSSLUG00000007379) #15	pnpo (ENSSLUG00000007364) #20	prr15lb (ENSSLUG00000007352) ##21	cdk5rap3 (ENSSLUG00000006108) #22	NFE2L1 (ENSSLUG00000006038) ##24	CBX1 (ENSSLUG00000006036) #25	ENSSLUG00000006030 #26	skap1 (ENSSLUG00000006020) #27	hoxb1b (ENSSLUG00000006012) #28	hoxb6b (ENSSLUG00000005997)	ttll6 (ENSSLUG00000005974)	ENSSLUG00000005953	snf8 (ENSSLUG00000005937)	ENSSLUG00000005920	chmp2a (ENSSLUG00000005899)	MRM1 (ENSSLUG00000005889)	ENSSLUG00000005832	stx4 (ENSSLUG00000005785)	ARHGAP44 (ENSSLUG00000005742)
Channel bull blenny	MODERN SPECIES	10	ENSCGOG00000021848	ormdl3 (ENSCGOG00000021821)	wnt3 (ENSCGOG00000021819)	nsfb (ENSCGOG00000021447)	psmd11b (ENSCGOG00000021286)	cdk5r1b (ENSCGOG00000021276)	MYO1D (ENSCGOG00000020276)	PDK2 (ENSCGOG00000019925)	ENSCGOG00000019917	TBKBP1 (ENSCGOG00000019915)	tbx21 (ENSCGOG00000019907)	osbpl7 (ENSCGOG00000019665) #14	mrpl10 (ENSCGOG00000019660) #15	pnpo (ENSCGOG00000019656) #20	prr15lb (ENSCGOG00000019655) ##21	cdk5rap3 (ENSCGOG00000019441) #22	NFE2L1 (ENSCGOG00000019422) ##24	cbx1b (ENSCGOG00000019414) #25	SNX11 (ENSCGOG00000019387) #26	ENSCGOG00000019386	skap1 (ENSCGOG00000019383) #27	hoxb1b (ENSCGOG00000019381) #28	ENSCGOG00000019380 #31	hoxb5b (ENSCGOG00000019378) #32	hoxb6b (ENSCGOG00000019374)	ttll6 (ENSCGOG00000019369)	ENSCGOG00000019365	snf8 (ENSCGOG00000019311)	ENSCGOG00000019301	MSL1 (ENSCGOG00000019250)	chmp2a (ENSCGOG00000019239)
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032	ENSGT00940000157457
Stickleback	MODERN SPECIES	5	ENSGACG00000003766	ormdl3 (ENSGACG00000003772)	wnt3 (ENSGACG00000003779)	nsfb (ENSGACG00000003786)	psmd11b (ENSGACG00000003795)	cdk5r1b (ENSGACG00000003801)	ENSGACG00000003806	MYO1D (ENSGACG00000003807)	PDK2 (ENSGACG00000003817)	TBKBP1 (ENSGACG00000003822)	tbx21 (ENSGACG00000003829)	osbpl7 (ENSGACG00000003833) #14	mrpl10 (ENSGACG00000003841) #15	pnpo (ENSGACG00000003855) #20	prr15lb (ENSGACG00000003873) ##21	cdk5rap3 (ENSGACG00000003875) #22	NFE2L1 (ENSGACG00000003904) ##24	CBX1 (ENSGACG00000003918) #25	SNX11 (ENSGACG00000003925) #26	skap1 (ENSGACG00000003929) #27	ENSGACG00000003939	ENSGACG00000003942 #31	hoxb5b (ENSGACG00000003945) #32	ttll6 (ENSGACG00000003950)	ENSGACG00000003954	snf8 (ENSGACG00000003963)	MSL1 (ENSGACG00000003985)	chmp2a (ENSGACG00000003993)	MRM1 (ENSGACG00000004024)	ENSGACG00000004027	SRCAP (ENSGACG00000004035)
Lumpfish	MODERN SPECIES	10	meox1 (ENSCLMG00005022631)	DHX8 (ENSCLMG00005022652)	ENSCLMG00005022848	ormdl3 (ENSCLMG00005022850)	wnt3 (ENSCLMG00005022851)	nsfb (ENSCLMG00005022864)	psmd11b (ENSCLMG00005022930)	cdk5r1b (ENSCLMG00005022932)	MYO1D (ENSCLMG00005022935)	PDK2 (ENSCLMG00005022960)	tbx21 (ENSCLMG00005022975)	osbpl7 (ENSCLMG00005022976) #14	mrpl10 (ENSCLMG00005022979) #15	pnpo (ENSCLMG00005022981) #20	prr15lb (ENSCLMG00005022983) ##21	cdk5rap3 (ENSCLMG00005022988) #22	NFE2L1 (ENSCLMG00005022992) ##24	CBX1 (ENSCLMG00005022995) #25	ENSCLMG00005022996 #26	skap1 (ENSCLMG00005022997) #27	hoxb1b (ENSCLMG00005022999) #28	hoxb5b (ENSCLMG00005023000) #32	hoxb6b (ENSCLMG00005023001)	ENSCLMG00005023003	ENSCLMG00005023004	ENSCLMG00005023005	snf8 (ENSCLMG00005023006)	ENSCLMG00005023007	chmp2a (ENSCLMG00005023008)	MRM1 (ENSCLMG00005023010)	ENSCLMG00005023012
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Zig-zag eel	MODERN SPECIES	10	DHX8 (ENSMAMG00000006195)	ENSMAMG00000006296	ormdl3 (ENSMAMG00000025248)	ENSMAMG00000006359	nsfb (ENSMAMG00000006372)	psmd11b (ENSMAMG00000006403)	cdk5r1b (ENSMAMG00000006430)	ENSMAMG00000006436	ENSMAMG00000006476	TBKBP1 (ENSMAMG00000027920)	tbx21 (ENSMAMG00000024359)	osbpl7 (ENSMAMG00000006572) #14	mrpl10 (ENSMAMG00000028052) #15	pnpo (ENSMAMG00000006642) #20	prr15lb (ENSMAMG00000006652) ##21	cdk5rap3 (ENSMAMG00000006672) #22	NFE2L1 (ENSMAMG00000006690) ##24	CBX1 (ENSMAMG00000006734) #25	ENSMAMG00000026591 #26	skap1 (ENSMAMG00000006775) #27	hoxb1b (ENSMAMG00000006840) #28	ENSMAMG00000006846 #31	hoxb5b (ENSMAMG00000006854) #32	hoxb6b (ENSMAMG00000006860)	ttll6 (ENSMAMG00000006872)	ENSMAMG00000006906	ENSMAMG00000006922	ENSMAMG00000006961	ENSMAMG00000006985	chmp2a (ENSMAMG00000006998)	ENSMAMG00000007018
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Climbing perch	MODERN SPECIES	10	DHX8 (ENSATEG00000007660)	ENSATEG00000007751	ormdl3 (ENSATEG00000026887)	ENSATEG00000007808	nsfb (ENSATEG00000007835)	psmd11b (ENSATEG00000007920)	cdk5r1b (ENSATEG00000007987)	ENSATEG00000008024	ENSATEG00000008138	TBKBP1 (ENSATEG00000008182)	tbx21 (ENSATEG00000026567)	osbpl7 (ENSATEG00000008218) #14	mrpl10 (ENSATEG00000008279) #15	pnpo (ENSATEG00000008296) #20	prr15lb (ENSATEG00000008355) ##21	cdk5rap3 (ENSATEG00000008382) #22	NFE2L1 (ENSATEG00000008441) ##24	CBX1 (ENSATEG00000027720) #25	ENSATEG00000028495 #26	skap1 (ENSATEG00000008510) #27	hoxb1b (ENSATEG00000008518) #28	hoxb5b (ENSATEG00000008526) #32	hoxb6b (ENSATEG00000008539)	ttll6 (ENSATEG00000008546)	ENSATEG00000008617	ENSATEG00000008631	ENSATEG00000026521	ENSATEG00000008682	chmp2a (ENSATEG00000028237)	ENSATEG00000027721	ENSATEG00000008776
Siamese fighting fish	MODERN SPECIES	9	meox1 (ENSBSLG00000014735)	etv4 (ENSBSLG00000014750)	DHX8 (ENSBSLG00000014811)	ormdl3 (ENSBSLG00000015492)	wnt3 (ENSBSLG00000015504)	nsfb (ENSBSLG00000015626)	psmd11b (ENSBSLG00000016762)	cdk5r1b (ENSBSLG00000017180)	MYO1D (ENSBSLG00000017279)	TBKBP1 (ENSBSLG00000019065)	tbx21 (ENSBSLG00000019081)	osbpl7 (ENSBSLG00000019101) #14	mrpl10 (ENSBSLG00000019251) #15	pnpo (ENSBSLG00000019268) #20	prr15lb (ENSBSLG00000019277) ##21	cdk5rap3 (ENSBSLG00000019290) #22	NFE2L1 (ENSBSLG00000019484) ##24	CBX1 (ENSBSLG00000019498) #25	SNX11 (ENSBSLG00000019527) #26	skap1 (ENSBSLG00000019797) #27	ENSBSLG00000019868	ENSBSLG00000019883 #31	hoxb5b (ENSBSLG00000019889) #32	hoxb6b (ENSBSLG00000019899)	ttll6 (ENSBSLG00000019917)	ENSBSLG00000019943	snf8 (ENSBSLG00000019958)	MSL1 (ENSBSLG00000019972)	chmp2a (ENSBSLG00000019984)	MRM1 (ENSBSLG00000019997)	ENSBSLG00000020021
Carangaria	ANCESTRAL SPECIES	13	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Seriola	ANCESTRAL SPECIES	1	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000159842.pc.a.a.b.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000018292.c	ENSGT00950000182832.A.a	ENSGT00390000018761	ENSGT00940000161032	ENSGT00940000157457
Greater amberjack	MODERN SPECIES	27	ENSSDUG00000010747	ormdl3 (ENSSDUG00000010734)	wnt3 (ENSSDUG00000010720)	nsfb (ENSSDUG00000010622)	psmd11b (ENSSDUG00000010564)	cdk5r1b (ENSSDUG00000010547)	MYO1D (ENSSDUG00000010486)	PDK2 (ENSSDUG00000010444)	ENSSDUG00000010427	TBKBP1 (ENSSDUG00000010348)	tbx21 (ENSSDUG00000010318)	osbpl7 (ENSSDUG00000010251) #14	mrpl10 (ENSSDUG00000010218) #15	pnpo (ENSSDUG00000010163) #20	prr15lb (ENSSDUG00000010143) ##21	cdk5rap3 (ENSSDUG00000010099) #22	NFE2L1 (ENSSDUG00000010077) ##24	CBX1 (ENSSDUG00000009538) #25	ENSSDUG00000009484 #26	skap1 (ENSSDUG00000009365) #27	hoxb1b (ENSSDUG00000009350) #28	ENSSDUG00000009341 #31	hoxb5b (ENSSDUG00000009329) #32	hoxb6b (ENSSDUG00000009288)	ttll6 (ENSSDUG00000009245)	ENSSDUG00000009198	snf8 (ENSSDUG00000009165)	ENSSDUG00000009133	ENSSDUG00000009112	chmp2a (ENSSDUG00000009093)	ENSSDUG00000009089
Yellowtail amberjack	MODERN SPECIES	2745	ENSSLDG00000023623	ormdl3 (ENSSLDG00000023647)	wnt3 (ENSSLDG00000023653)	nsfb (ENSSLDG00000023659)	psmd11b (ENSSLDG00000023708)	cdk5r1b (ENSSLDG00000023731)	MYO1D (ENSSLDG00000023744)	PDK2 (ENSSLDG00000023784)	mibp2 (ENSSLDG00000023804)	TBKBP1 (ENSSLDG00000023814)	tbx21 (ENSSLDG00000023842)	osbpl7 (ENSSLDG00000023859) #14	mrpl10 (ENSSLDG00000023900) #15	pnpo (ENSSLDG00000023906) #20	prr15lb (ENSSLDG00000023922) ##21	cdk5rap3 (ENSSLDG00000023933) #22	NFE2L1 (ENSSLDG00000023957) ##24	CBX1 (ENSSLDG00000023975) #25	ENSSLDG00000023984 #26	skap1 (ENSSLDG00000023996) #27	ENSSLDG00000024036 #31	hoxb1b (ENSSLDG00000024047) #28	hoxb5b (ENSSLDG00000024056) #32	hoxb6b (ENSSLDG00000024060)	ENSSLDG00000024068	ENSSLDG00000024087	snf8 (ENSSLDG00000024098)	ENSSLDG00000024113	chmp2a (ENSSLDG00000024123)	ENSSLDG00000024141	ENSSLDG00000024146
Barramundi perch	MODERN SPECIES	143		ormdl3 (ENSLCAG00010013074)	wnt3 (ENSLCAG00010013080)	nsfb (ENSLCAG00010013227)	psmd11b (ENSLCAG00010013998)	cdk5r1b (ENSLCAG00010014014)	MYO1D (ENSLCAG00010014023)	ENSLCAG00010014039	PDK2 (ENSLCAG00010014074)	ENSLCAG00010014321	tbx21 (ENSLCAG00010014324)	osbpl7 (ENSLCAG00010014350) #14	mrpl10 (ENSLCAG00010014459) #15	pnpo (ENSLCAG00010014463) #20	prr15lb (ENSLCAG00010014473) ##21	cdk5rap3 (ENSLCAG00010014478) #22	NFE2L1 (ENSLCAG00010014488) ##24	CBX1 (ENSLCAG00010014494) #25	ENSLCAG00010014509 #26	skap1 (ENSLCAG00010014518) #27	hoxb1b (ENSLCAG00010014523) #28	ENSLCAG00010014527	hoxb5b (ENSLCAG00010014531) #32	hoxb6b (ENSLCAG00010014534)	ttll6 (ENSLCAG00010014537)	ENSLCAG00010014542	snf8 (ENSLCAG00010014551)	ENSLCAG00010014556	ENSLCAG00010014560	chmp2a (ENSLCAG00010014564)	ENSLCAG00010014567
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Turbot	MODERN SPECIES	9	ENSSMAG00000008939	nsfb (ENSSMAG00000008968)	psmd11b (ENSSMAG00000009060)	cdk5r1b (ENSSMAG00000009091)	ENSSMAG00000009096	ENSSMAG00000035920	ENSSMAG00000009144	ENSSMAG00000034152	ENSSMAG00000009151	TBKBP1 (ENSSMAG00000009169)	tbx21 (ENSSMAG00000009189)	osbpl7 (ENSSMAG00000009287) #14	mrpl10 (ENSSMAG00000009358) #15	pnpo (ENSSMAG00000009382) #20	prr15lb (ENSSMAG00000009371) ##21	cdk5rap3 (ENSSMAG00000009389) #22	NFE2L1 (ENSSMAG00000009430) ##24	CBX1 (ENSSMAG00000009453) #25	ENSSMAG00000009467 #26	skap1 (ENSSMAG00000009479) #27	hoxb1b (ENSSMAG00000009508) #28	ENSSMAG00000009511 #31	hoxb5b (ENSSMAG00000009522) #32	ttll6 (ENSSMAG00000009549)	ENSSMAG00000009561	ENSSMAG00000009587	ENSSMAG00000037850	ENSSMAG00000009617	chmp2a (ENSSMAG00000028193)	ENSSMAG00000009657	ENSSMAG00000009670
Tongue sole	MODERN SPECIES	18	DHX8 (ENSCSEG00000015029)	ENSCSEG00000014988	ormdl3 (ENSCSEG00000014961)	wnt3 (ENSCSEG00000014940)	nsfb (ENSCSEG00000014912)	psmd11b (ENSCSEG00000014884)	cdk5r1b (ENSCSEG00000014872)	MYO1D (ENSCSEG00000014827)	PDK2 (ENSCSEG00000014796)	TBKBP1 (ENSCSEG00000014783)	tbx21 (ENSCSEG00000014775)	osbpl7 (ENSCSEG00000014747) #14	mrpl10 (ENSCSEG00000014726) #15	pnpo (ENSCSEG00000014722) #20	prr15lb (ENSCSEG00000014716) ##21	cdk5rap3 (ENSCSEG00000014710) #22	NFE2L1 (ENSCSEG00000014705) ##24	CBX1 (ENSCSEG00000014701) #25	ENSCSEG00000014692 #26	ENSCSEG00000014685	skap1 (ENSCSEG00000014680) #27	hoxb1b (ENSCSEG00000014673) #28	hoxb5b (ENSCSEG00000014667) #32	hoxb6b (ENSCSEG00000014662)	ENSCSEG00000014655	ENSCSEG00000014648	snf8 (ENSCSEG00000014625)	MSL1 (ENSCSEG00000014596)	chmp2a (ENSCSEG00000014585)	ENSCSEG00000014575	ENSCSEG00000014531
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000158354.c.a #32	ENSGT00940000161108 #33	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032	ENSGT00940000178941
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000158354.c.a #32	ENSGT00940000161108 #33	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032	ENSGT00940000178941
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032	ENSGT00940000157457
Mangrove rivulus	MODERN SPECIES	312										TBKBP1 (ENSKMAG00000004750)	tbx21 (ENSKMAG00000004729)	osbpl7 (ENSKMAG00000004714) #14	mrpl10 (ENSKMAG00000004688) #15	prr15lb (ENSKMAG00000004674) ##21	pnpo (ENSKMAG00000004647) #20	cdk5rap3 (ENSKMAG00000004629) #22	NFE2L1 (ENSKMAG00000004568) ##24	CBX1 (ENSKMAG00000004535) #25	snx11 (ENSKMAG00000004499) #26	skap1 (ENSKMAG00000004481) #27	hoxb1b (ENSKMAG00000004470) #28	hoxb5b (ENSKMAG00000004447) #32	hoxb6b (ENSKMAG00000004436)	ENSKMAG00000004418	ENSKMAG00000004403	snf8 (ENSKMAG00000004361)	MSL1 (ENSKMAG00000004344)	chmp2a (ENSKMAG00000004303)	ENSKMAG00000004222	ENSKMAG00000003980	stx4 (ENSKMAG00000003934)
Turquoise killifish	MODERN SPECIES	1621	ENSNFUG00015013421	ENSNFUG00015013394	ORMDL3 (ENSNFUG00015013386)	WNT3 (ENSNFUG00015013372)	nsfb (ENSNFUG00015013189)	PSMD11B (ENSNFUG00015013143)	CDK5R1B (ENSNFUG00015013133)	ENSNFUG00015013131	MYO1D (ENSNFUG00015013217)	PDK2 (ENSNFUG00015012628)	tbx21 (ENSNFUG00015012575)	osbpl7 (ENSNFUG00015011718) #14	MRPL10 (ENSNFUG00015011631) #15	PNPO (ENSNFUG00015011618) #20	PRR15LB (ENSNFUG00015011613) ##21	cdk5rap3 (ENSNFUG00015011585) #22	NFE2L1 (ENSNFUG00015011571) ##24	CBX1 (ENSNFUG00015011548) #25	ENSNFUG00015011541	SNX11 (ENSNFUG00015011535) #26	skap1 (ENSNFUG00015011524) #27	hoxb1b (ENSNFUG00015011511) #28	HOXB5 (ENSNFUG00015011504) #32	hoxb6b (ENSNFUG00015011489)	ttll6 (ENSNFUG00015011481)	ENSNFUG00015011466	ENSNFUG00015011457	SNF8 (ENSNFUG00015011426)	MSL1 (ENSNFUG00015011399)	BC2 (ENSNFUG00015011383)	MRM1 (ENSNFUG00015011377)
Cyprinodontoidei	ANCESTRAL SPECIES	17	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000158354.c.a #32	ENSGT00940000161108 #33	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032	ENSGT00940000178941	ENSGT00940000157457
NAME_4	ANCESTRAL SPECIES	22	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000158354.c.a #32	ENSGT00940000161108 #33	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032	ENSGT00940000178941	ENSGT00940000157457
Mummichog	MODERN SPECIES	2379		ormdl3 (ENSFHEG00000006451)	wnt3 (ENSFHEG00000006433)	nsfb (ENSFHEG00000000666)	psmd11b (ENSFHEG00000006315)	cdk5r1b (ENSFHEG00000006302)	MYO1D (ENSFHEG00000006274)	PDK2 (ENSFHEG00000006204)	ENSFHEG00000006116	ENSFHEG00000006109	tbx21 (ENSFHEG00000006090)	osbpl7 (ENSFHEG00000006051) #14	mrpl10 (ENSFHEG00000005890) #15	pnpo (ENSFHEG00000005883) #20	prr15lb (ENSFHEG00000005875) ##21	cdk5rap3 (ENSFHEG00000005854) #22	NFE2L1 (ENSFHEG00000005838) ##24	CBX1 (ENSFHEG00000005820) #25	ENSFHEG00000005801 #26	skap1 (ENSFHEG00000005784) #27	hoxb1b (ENSFHEG00000005746) #28	ENSFHEG00000005735 #31	hoxb5b (ENSFHEG00000005723) #32	HOXB6 (ENSFHEG00000000652) #33	ttll6 (ENSFHEG00000005696)	ENSFHEG00000005636	snf8 (ENSFHEG00000005620)	ENSFHEG00000005579	chmp2a (ENSFHEG00000005558)	ENSFHEG00000005529	ENSFHEG00000005498
Sheepshead minnow	MODERN SPECIES	558	zgc:101663 (ENSCVAG00000012899)	ap4b1 (ENSCVAG00000012893)	sephs3 (ENSCVAG00000012883)	ikbkg (ENSCVAG00000012843)	tmed4 (ENSCVAG00000012820)	plpbp (ENSCVAG00000012804)	snrpg (ENSCVAG00000012770)	ENSCVAG00000012758	TBC1D22B (ENSCVAG00000012751)	TBKBP1 (ENSCVAG00000012726)	tbx21 (ENSCVAG00000012700)	osbpl7 (ENSCVAG00000012671) #14	mrpl10 (ENSCVAG00000012527) #15	pnpo (ENSCVAG00000012510) #20	prr15lb (ENSCVAG00000012499) ##21	cdk5rap3 (ENSCVAG00000012484) #22	NFE2L1 (ENSCVAG00000012423) ##24	CBX1 (ENSCVAG00000012365) #25	ENSCVAG00000012258 #26	skap1 (ENSCVAG00000012253) #27	hoxb1b (ENSCVAG00000012234) #28	ENSCVAG00000012230 #31	hoxb5b (ENSCVAG00000012223) #32	hoxb6b (ENSCVAG00000012214)	ENSCVAG00000012205	snf8 (ENSCVAG00000012190)	ENSCVAG00000012136	chmp2a (ENSCVAG00000012127)	ENSCVAG00000012104	ENSCVAG00000012095	ENSCVAG00000012064
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000158354.c.a #32	ENSGT00940000161108 #33	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032	ENSGT00940000157457	ENSGT01030000234627.a.b.b
Poecilia	ANCESTRAL SPECIES	15	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000158354.c.a #32	ENSGT00940000161108 #33	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032	ENSGT00940000157457	ENSGT01030000234627.a.b.b
NAME_6	ANCESTRAL SPECIES		ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000158354.c.a #32	ENSGT00940000161108 #33	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032	ENSGT00940000157457	ENSGT01030000234627.a.b.b
Sailfin molly	MODERN SPECIES	144									PDK2 (ENSPLAG00000021198)	TBKBP1 (ENSPLAG00000021169)	tbx21 (ENSPLAG00000021142)	osbpl7 (ENSPLAG00000021130) #14	mrpl10 (ENSPLAG00000021066) #15	pnpo (ENSPLAG00000021060) #20	prr15lb (ENSPLAG00000021056) ##21	cdk5rap3 (ENSPLAG00000021044) #22	NFE2L1 (ENSPLAG00000000452) ##24	CBX1 (ENSPLAG00000020985) #25	SNX11 (ENSPLAG00000020964) #26	skap1 (ENSPLAG00000020957) #27	hoxb1b (ENSPLAG00000020919) #28	hoxb5b (ENSPLAG00000020912) #32	hoxb6a (ENSPLAG00000020898) #33	ENSPLAG00000020859	ENSPLAG00000020834	snf8 (ENSPLAG00000020826)	ENSPLAG00000020786	chmp2a (ENSPLAG00000020778)	ENSPLAG00000020759	ENSPLAG00000020724	ENSPLAG00000020707
Amazon molly	MODERN SPECIES	259	DHX8 (ENSPFOG00000017661)	ENSPFOG00000017739	ormdl3 (ENSPFOG00000017787)	wnt3 (ENSPFOG00000017788)	nsfb (ENSPFOG00000017806)	psmd11b (ENSPFOG00000017872)	cdk5r1b (ENSPFOG00000017899)	MYO1D (ENSPFOG00000017911)	PDK2 (ENSPFOG00000017978)	TBKBP1 (ENSPFOG00000017995)	tbx21 (ENSPFOG00000018019)	osbpl7 (ENSPFOG00000018036) #14	mrpl10 (ENSPFOG00000018077) #15	pnpo (ENSPFOG00000018080) #20	prr15lb (ENSPFOG00000020448) ##21	cdk5rap3 (ENSPFOG00000018092) #22	NFE2L1 (ENSPFOG00000018108) ##24	CBX1 (ENSPFOG00000018123) #25	CBX1 (ENSPFOG00000023882) #25	SNX11 (ENSPFOG00000018135) #26	skap1 (ENSPFOG00000018142) #27	hoxb1b (ENSPFOG00000018156) #28	ENSPFOG00000018165 #31	hoxb5b (ENSPFOG00000018167) #32	HOXB6 (ENSPFOG00000018177) #33	ttll6 (ENSPFOG00000018186)	ENSPFOG00000022457	snf8 (ENSPFOG00000018199)	ENSPFOG00000018211	chmp2a (ENSPFOG00000018226)	ENSPFOG00000018234
Guppy	MODERN SPECIES	449	DHX8 (ENSPREG00000011752)	ENSPREG00000011800	ormdl3 (ENSPREG00000011837)	wnt3 (ENSPREG00000011860)	nsfb (ENSPREG00000011963)	psmd11b (ENSPREG00000012686)	cdk5r1b (ENSPREG00000012729)	MYO1D (ENSPREG00000012763)	PDK2 (ENSPREG00000012826)	TBKBP1 (ENSPREG00000012841)	tbx21 (ENSPREG00000012858)	osbpl7 (ENSPREG00000012881) #14	mrpl10 (ENSPREG00000012907) #15	pnpo (ENSPREG00000012911) #20	prr15lb (ENSPREG00000012924) ##21	cdk5rap3 (ENSPREG00000012945) #22	NFE2L1 (ENSPREG00000012983) ##24	CBX1 (ENSPREG00000013005) #25	SNX11 (ENSPREG00000013016) #26	skap1 (ENSPREG00000013030) #27	ENSPREG00000013048 #31	hoxb5b (ENSPREG00000013058) #32	HOXB6 (ENSPREG00000013067) #33	ttll6 (ENSPREG00000013089)	ENSPREG00000013120	snf8 (ENSPREG00000013140)	MSL1 (ENSPREG00000013175)	chmp2a (ENSPREG00000013198)	MRM1 (ENSPREG00000013224)	ENSPREG00000013244	ENSPREG00000013313
Platyfish	MODERN SPECIES	1	DHX8 (ENSXMAG00000017907)	ENSXMAG00000017922	ormdl3 (ENSXMAG00000026826)	wnt3 (ENSXMAG00000023933)	nsfb (ENSXMAG00000017938)	psmd11b (ENSXMAG00000017949)	cdk5r1b (ENSXMAG00000017963)	MYO1D (ENSXMAG00000017964)	PDK2 (ENSXMAG00000014954)	TBKBP1 (ENSXMAG00000013648)	tbx21 (ENSXMAG00000023411)	osbpl7 (ENSXMAG00000013669) #14	mrpl10 (ENSXMAG00000013700) #15	pnpo (ENSXMAG00000013703) #20	prr15lb (ENSXMAG00000019768) ##21	cdk5rap3 (ENSXMAG00000013715) #22	NFE2L1 (ENSXMAG00000029109) ##24	CBX1 (ENSXMAG00000025560) #25	ENSXMAG00000029233 #26	skap1 (ENSXMAG00000013728) #27	hoxb1b (ENSXMAG00000025601) #28	hoxb5b (ENSXMAG00000000077) #32	hoxb6a (ENSXMAG00000021318) #33	ttll6 (ENSXMAG00000014927)	ENSXMAG00000014917	snf8 (ENSXMAG00000027097)	ENSXMAG00000014902	chmp2a (ENSXMAG00000014893)	ENSXMAG00000014890	ENSXMAG00000014888	ENSXMAG00000021295
Oryzias	ANCESTRAL SPECIES	11	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032	ENSGT00940000157457
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032	ENSGT00940000157457
Javanese ricefish	MODERN SPECIES	10	ENSOJAG00000021267	arg1 (ENSOJAG00000021333)	ENSOJAG00000021568	ormdl3 (ENSOJAG00000012215)	wnt3 (ENSOJAG00000012236)	nsfb (ENSOJAG00000012430)	psmd11b (ENSOJAG00000014369)	cdk5r1b (ENSOJAG00000014476)	MYO1D (ENSOJAG00000014526)	PDK2 (ENSOJAG00000014953)	tbx21 (ENSOJAG00000015381)	osbpl7 (ENSOJAG00000015460) #14	mrpl10 (ENSOJAG00000016212) #15	pnpo (ENSOJAG00000016222) #20	prr15lb (ENSOJAG00000016240) ##21	cdk5rap3 (ENSOJAG00000016281) #22	NFE2L1 (ENSOJAG00000016786) ##24	CBX1 (ENSOJAG00000016801) #25	ENSOJAG00000016824 #26	skap1 (ENSOJAG00000016831) #27	hoxb1b (ENSOJAG00000016844) #28	ENSOJAG00000016852 #31	hoxb5b (ENSOJAG00000016856) #32	hoxb6b (ENSOJAG00000016864)	ENSOJAG00000016884	snf8 (ENSOJAG00000016900)	MSL1 (ENSOJAG00000016929)	chmp2a (ENSOJAG00000017004)	ENSOJAG00000017025	ENSOJAG00000017048	stx4 (ENSOJAG00000017983)
Indian medaka	MODERN SPECIES	17	DHX8 (ENSOMEG00000004222)	ENSOMEG00000004168	ormdl3 (ENSOMEG00000004147)	wnt3 (ENSOMEG00000004139)	nsfb (ENSOMEG00000004128)	psmd11b (ENSOMEG00000004102)	cdk5r1b (ENSOMEG00000004056)	MYO1D (ENSOMEG00000004037)	PDK2 (ENSOMEG00000004011)	TBKBP1 (ENSOMEG00000003994)	tbx21 (ENSOMEG00000003983)	osbpl7 (ENSOMEG00000003960) #14	mrpl10 (ENSOMEG00000000741) #15	pnpo (ENSOMEG00000003897) #20	prr15lb (ENSOMEG00000003886) ##21	cdk5rap3 (ENSOMEG00000003828) #22	NFE2L1 (ENSOMEG00000003764) ##24	CBX1 (ENSOMEG00000003749) #25	ENSOMEG00000003715 #26	skap1 (ENSOMEG00000003668) #27	ENSOMEG00000003640	hoxb1b (ENSOMEG00000003629) #28	hoxb5b (ENSOMEG00000003624) #32	hoxb6b (ENSOMEG00000003618)	ttll6 (ENSOMEG00000003603)	ENSOMEG00000003579	snf8 (ENSOMEG00000003554)	MSL1 (ENSOMEG00000003539)	chmp2a (ENSOMEG00000003522)	ENSOMEG00000003504	ENSOMEG00000003498
Oryzias_a	ANCESTRAL SPECIES	52	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032	ENSGT00940000157457
Japanese Medaka HdrR	MODERN SPECIES	10	ormdl3 (ENSORLG00000027713)	wnt3 (ENSORLG00000012027)	nsfb (ENSORLG00000012044)	psmd11b (ENSORLG00000012079)	cdk5r1b (ENSORLG00000012086)	MYO1D (ENSORLG00000012150)	ENSORLG00000023453	PDK2 (ENSORLG00000012173)	ENSORLG00000030262	ENSORLG00000024271	tbx21 (ENSORLG00000026554)	osbpl7 (ENSORLG00000012241) #14	mrpl10 (ENSORLG00000025561) #15	pnpo (ENSORLG00000029321) #20	prr15lb (ENSORLG00000012296) ##21	cdk5rap3 (ENSORLG00000012325) #22	NFE2L1 (ENSORLG00000028161) ##24	CBX1 (ENSORLG00000022226) #25	ENSORLG00000022773 #26	skap1 (ENSORLG00000026407) #27	ENSORLG00000012375 #31	hoxb1b (ENSORLG00000012369) #28	hoxb5b (ENSORLG00000022001) #32	hoxb6b (ENSORLG00000012387)	ttll6 (ENSORLG00000012392)	ENSORLG00000012415	snf8 (ENSORLG00000012436)	MSL1 (ENSORLG00000012451)	chmp2a (ENSORLG00000012466)	ENSORLG00000025876	ENSORLG00000024419
Chinese medaka	MODERN SPECIES	216	DHX8 (ENSOSIG00000016591)	ENSOSIG00000015794	ormdl3 (ENSOSIG00000015780)	wnt3 (ENSOSIG00000015776)	nsfb (ENSOSIG00000011846)	psmd11b (ENSOSIG00000011793)	cdk5r1b (ENSOSIG00000011787)	MYO1D (ENSOSIG00000011781)	PDK2 (ENSOSIG00000010337)	TBKBP1 (ENSOSIG00000010325)	tbx21 (ENSOSIG00000010324)	osbpl7 (ENSOSIG00000009389) #14	mrpl10 (ENSOSIG00000009376) #15	pnpo (ENSOSIG00000009375) #20	prr15lb (ENSOSIG00000009374) ##21	cdk5rap3 (ENSOSIG00000008635) #22	NFE2L1 (ENSOSIG00000008612) ##24	cbx1b (ENSOSIG00000008611) #25	ENSOSIG00000008606 #26	skap1 (ENSOSIG00000008602) #27	hoxb1b (ENSOSIG00000008590) #28	ENSOSIG00000008588 #31	hoxb6b (ENSOSIG00000008573)	ttll6 (ENSOSIG00000008572)	ENSOSIG00000008567	snf8 (ENSOSIG00000008562)	MSL1 (ENSOSIG00000008535)	chmp2a (ENSOSIG00000008534)	MRM1 (ENSOSIG00000008533)	ENSOSIG00000008531	stx4 (ENSOSIG00000008477)
Ovalentaria_B	ANCESTRAL SPECIES	21	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Pomacentridae	ANCESTRAL SPECIES	41	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000159774 #31	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761
Pomacentridae_A	ANCESTRAL SPECIES	39	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000159774 #31	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761
Amphiprion	ANCESTRAL SPECIES	59	ENSGT00940000155510	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Orange clownfish	MODERN SPECIES	10	ENSAPEG00000005621	ormdl3 (ENSAPEG00000005565)	wnt3 (ENSAPEG00000005543)	nsfb (ENSAPEG00000005478)	psmd11b (ENSAPEG00000005372)	cdk5r1b (ENSAPEG00000005355)	ENSAPEG00000005336	MYO1D (ENSAPEG00000005253)	PDK2 (ENSAPEG00000005179)	TBKBP1 (ENSAPEG00000005081)	tbx21 (ENSAPEG00000005065)	osbpl7 (ENSAPEG00000004960) #14	mrpl10 (ENSAPEG00000004939) #15	pnpo (ENSAPEG00000004906) #20	prr15lb (ENSAPEG00000004875) ##21	cdk5rap3 (ENSAPEG00000004768) #22	NFE2L1 (ENSAPEG00000004752) ##24	CBX1 (ENSAPEG00000004728) #25	ENSAPEG00000004721 #26	skap1 (ENSAPEG00000004678) #27	hoxb1b (ENSAPEG00000004664) #28	hoxb5b (ENSAPEG00000004651) #32	hoxb6b (ENSAPEG00000004636)	ttll6 (ENSAPEG00000004623)	ENSAPEG00000004609	snf8 (ENSAPEG00000004571)	ENSAPEG00000004551	MSL1 (ENSAPEG00000004536)	chmp2a (ENSAPEG00000004520)	ENSAPEG00000004511	ENSAPEG00000004462
Clown anemonefish	MODERN SPECIES	3336											tbx21 (ENSAOCG00000006562)	osbpl7 (ENSAOCG00000006640) #14	mrpl10 (ENSAOCG00000006653) #15	pnpo (ENSAOCG00000006678) #20	prr15lb (ENSAOCG00000000326) ##21	cdk5rap3 (ENSAOCG00000000335) #22	NFE2L1 (ENSAOCG00000006758) ##24	CBX1 (ENSAOCG00000006769) #25	ENSAOCG00000006783 #26	skap1 (ENSAOCG00000006822) #27	hoxb1b (ENSAOCG00000006832) #28	hoxb5b (ENSAOCG00000006841) #32	hoxb6b (ENSAOCG00000006852)	ENSAOCG00000006862 #31	ttll6 (ENSAOCG00000006877)	ENSAOCG00000006896	snf8 (ENSAOCG00000006926)	ENSAOCG00000006940	MSL1 (ENSAOCG00000006956)	chmp2a (ENSAOCG00000006984)	ENSAOCG00000000362
Spiny chromis	MODERN SPECIES	195								MYO1D (ENSAPOG00000015605)	PDK2 (ENSAPOG00000015675)	ENSAPOG00000015691	tbx21 (ENSAPOG00000015726)	osbpl7 (ENSAPOG00000015819) #14	mrpl10 (ENSAPOG00000015827) #15	pnpo (ENSAPOG00000015876) #20	prr15lb (ENSAPOG00000015904) ##21	cdk5rap3 (ENSAPOG00000015958) #22	NFE2L1 (ENSAPOG00000015968) ##24	CBX1 (ENSAPOG00000000707) #25	ENSAPOG00000001136 #26	skap1 (ENSAPOG00000016103) #27	hoxb1b (ENSAPOG00000016123) #28	ENSAPOG00000016130 #31	hoxb5b (ENSAPOG00000016143) #32	hoxb6b (ENSAPOG00000016148)	ttll6 (ENSAPOG00000016156)	ENSAPOG00000016174	snf8 (ENSAPOG00000016218)	ENSAPOG00000016250	MSL1 (ENSAPOG00000000764)	chmp2a (ENSAPOG00000016297)	ENSAPOG00000016309
Bicolor damselfish	MODERN SPECIES	343								MYO1D (ENSSPAG00000002348)	PDK2 (ENSSPAG00000002320)	TBKBP1 (ENSSPAG00000002245)	tbx21 (ENSSPAG00000002229)	osbpl7 (ENSSPAG00000002079) #14	mrpl10 (ENSSPAG00000002058) #15	pnpo (ENSSPAG00000002030) #20	prr15lb (ENSSPAG00000002021) ##21	cdk5rap3 (ENSSPAG00000001987) #22	NFE2L1 (ENSSPAG00000001968) ##24	CBX1 (ENSSPAG00000001947) #25	ENSSPAG00000001931 #26	skap1 (ENSSPAG00000001917) #27	hoxb1b (ENSSPAG00000001907) #28	ENSSPAG00000001902 #31	hoxb5b (ENSSPAG00000001894) #32	hoxb6b (ENSSPAG00000001854)	ttll6 (ENSSPAG00000001805)	ENSSPAG00000001780	snf8 (ENSSPAG00000001750)	ENSSPAG00000001736	ENSSPAG00000001725	chmp2a (ENSSPAG00000001703)	ENSSPAG00000001542
Cichlidae	ANCESTRAL SPECIES	15	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000005121	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761
Midas cichlid	MODERN SPECIES	113	DHX8 (ENSACIG00000013170)	ENSACIG00000013155	ormdl3 (ENSACIG00000013146)	wnt3 (ENSACIG00000013133)	nsfb (ENSACIG00000013096)	psmd11b (ENSACIG00000013064)	cdk5r1b (ENSACIG00000013056)	MYO1D (ENSACIG00000013002)	PDK2 (ENSACIG00000012967)	TBKBP1 (ENSACIG00000012942)	tbx21 (ENSACIG00000012923)	osbpl7 (ENSACIG00000012891) #14	mrpl10 (ENSACIG00000012855) #15	pnpo (ENSACIG00000012840) #20	prr15lb (ENSACIG00000012821) ##21	cdk5rap3 (ENSACIG00000012797) #22	NFE2L1 (ENSACIG00000012781) ##24	CBX1 (ENSACIG00000012511) #25	ENSACIG00000012501	SNX11 (ENSACIG00000012442) #26	skap1 (ENSACIG00000012394) #27	hoxb1b (ENSACIG00000012377) #28	hoxb5b (ENSACIG00000012365) #32	hoxb6b (ENSACIG00000012351)	ENSACIG00000012333	ENSACIG00000012308	snf8 (ENSACIG00000012289)	ENSACIG00000012280	MSL1 (ENSACIG00000012261)	ENSACIG00000012251	MRM1 (ENSACIG00000012244)
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000005121	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761
Nile tilapia	MODERN SPECIES	20	DHX8 (ENSONIG00000018248)	ENSONIG00000018247	ormdl3 (ENSONIG00000041840)	wnt3 (ENSONIG00000027851)	nsfb (ENSONIG00000018240)	psmd11b (ENSONIG00000018238)	cdk5r1b (ENSONIG00000018237)	ENSONIG00000032662	MYO1D (ENSONIG00000018232)	PDK2 (ENSONIG00000018225)	tbx21 (ENSONIG00000018223)	osbpl7 (ENSONIG00000018222) #14	mrpl10 (ENSONIG00000038469) #15	pnpo (ENSONIG00000018219) #20	prr15lb (ENSONIG00000021237) ##21	cdk5rap3 (ENSONIG00000018216) #22	NFE2L1 (ENSONIG00000018214) ##24	cbx1 (ENSONIG00000032457) #25	ENSONIG00000027588 #26	skap1 (ENSONIG00000018210) #27	hoxb1b (ENSONIG00000018209) #28	ENSONIG00000032613 #31	hoxb5b (ENSONIG00000034578) #32	hoxb6b (ENSONIG00000036813)	ttll6 (ENSONIG00000018205)	ENSONIG00000018204	snf8 (ENSONIG00000018202)	ENSONIG00000031164	ENSONIG00000028875	chmp2a (ENSONIG00000018198)	MRM1 (ENSONIG00000021236)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00390000005121	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761
Haplochromini	ANCESTRAL SPECIES	17	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b.a ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Haplochromini_A	ANCESTRAL SPECIES	16	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b.a ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Haplochromini_B	ANCESTRAL SPECIES	15	ENSGT00940000157917.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b.j	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b.a ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.a.a #25	ENSGT00940000160113 #26	ENSGT00390000017856.b #27	ENSGT00940000159503 #28	ENSGT00940000158354.c.a #32	ENSGT00940000165065.b	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00390000007843	ENSGT00940000177404	ENSGT00390000018292.c	ENSGT00950000182832.A	ENSGT00390000018761	ENSGT00940000161032
Zebra mbuna	MODERN SPECIES	1111	nsfb (ENSMZEG00005007665)	psmd11b (ENSMZEG00005007703)	cdk5r1b (ENSMZEG00005007741)	MYO1D (ENSMZEG00005007763)	ENSMZEG00005007822	PDK2 (ENSMZEG00005007834)	TBKBP1 (ENSMZEG00005007868)	ENSMZEG00005007896	tbx21 (ENSMZEG00005007904)	osbpl7 (ENSMZEG00005007937) #14	mrpl10 (ENSMZEG00005008005) #15	pnpo (ENSMZEG00005008023) #20	prr15lb (ENSMZEG00005008031) ##21	pnpo (ENSMZEG00005008034) #20	prr15lb (ENSMZEG00005008046) ##21	cdk5rap3 (ENSMZEG00005008062) #22	NFE2L1 (ENSMZEG00005008081) ##24	CBX1 (ENSMZEG00005008108) #25	ENSMZEG00005008129 #26	skap1 (ENSMZEG00005008137) #27	hoxb1b (ENSMZEG00005008160) #28	ENSMZEG00005008164 #31	hoxb5b (ENSMZEG00005008174) #32	hoxb6b (ENSMZEG00005008179)	ttll6 (ENSMZEG00005008192)	ENSMZEG00005008225	snf8 (ENSMZEG00005008250)	ENSMZEG00005008273	ENSMZEG00005008282	chmp2a (ENSMZEG00005008299)	MRM1 (ENSMZEG00005008320)
Eastern happy	MODERN SPECIES	20	ENSACLG00000024723	ormdl3 (ENSACLG00000024712)	wnt3 (ENSACLG00000024697)	nsfb (ENSACLG00000024545)	psmd11b (ENSACLG00000024496)	cdk5r1b (ENSACLG00000024490)	MYO1D (ENSACLG00000024433)	ENSACLG00000024421	PDK2 (ENSACLG00000024391)	TBKBP1 (ENSACLG00000024327)	tbx21 (ENSACLG00000024135)	osbpl7 (ENSACLG00000024111) #14	mrpl10 (ENSACLG00000024106) #15	pnpo (ENSACLG00000024083) #20	prr15lb (ENSACLG00000024070) ##21	cdk5rap3 (ENSACLG00000024017) #22	NFE2L1 (ENSACLG00000023997) ##24	CBX1 (ENSACLG00000023967) #25	ENSACLG00000023959 #26	skap1 (ENSACLG00000023934) #27	hoxb1b (ENSACLG00000023912) #28	ENSACLG00000023896	hoxb5b (ENSACLG00000023879) #32	hoxb6b (ENSACLG00000023871)	ENSACLG00000023856	ENSACLG00000023850	ENSACLG00000023837	snf8 (ENSACLG00000023790)	ENSACLG00000023779	ENSACLG00000023772	chmp2a (ENSACLG00000023753)
P. nyererei	MODERN SPECIES	312	ENSPNYG00000001343	ormdl3 (ENSPNYG00000001323)	wnt3 (ENSPNYG00000001306)	nsfb (ENSPNYG00000001221)	psmd11b (ENSPNYG00000001168)	cdk5r1b (ENSPNYG00000001138)	MYO1D (ENSPNYG00000001082)	ENSPNYG00000001065	PDK2 (ENSPNYG00000001017)	TBKBP1 (ENSPNYG00000000967)	tbx21 (ENSPNYG00000000934)	osbpl7 (ENSPNYG00000000854) #14	mrpl10 (ENSPNYG00000000847) #15	pnpo (ENSPNYG00000000822) #20	prr15lb (ENSPNYG00000000803) ##21	cdk5rap3 (ENSPNYG00000000768) #22	NFE2L1 (ENSPNYG00000000746) ##24	CBX1 (ENSPNYG00000000724) #25	ENSPNYG00000000701 #26	skap1 (ENSPNYG00000000665) #27	hoxb1b (ENSPNYG00000000656) #28	ENSPNYG00000000647 #31	hoxb5b (ENSPNYG00000000625) #32	hoxb6b (ENSPNYG00000000614)	ENSPNYG00000000605	calcoco2 (ENSPNYG00000000594)	snf8 (ENSPNYG00000000564)	ENSPNYG00000000552	ENSPNYG00000000547	chmp2a (ENSPNYG00000000534)	MRM1 (ENSPNYG00000000528)
Burton s mouthbrooder	MODERN SPECIES	274	ENSHBUG00000005555	ormdl3 (ENSHBUG00000005502)	nsfb (ENSHBUG00000005476)	wnt3 (ENSHBUG00000000764)	psmd11b (ENSHBUG00000005413)	cdk5r1b (ENSHBUG00000005346)	MYO1D (ENSHBUG00000005330)	ENSHBUG00000005271	PDK2 (ENSHBUG00000005261)	TBKBP1 (ENSHBUG00000005232)	tbx21 (ENSHBUG00000005168)	osbpl7 (ENSHBUG00000005121) #14	mrpl10 (ENSHBUG00000004903) #15	pnpo (ENSHBUG00000004889) #20	prr15lb (ENSHBUG00000004866) ##21	cdk5rap3 (ENSHBUG00000004839) #22	NFE2L1 (ENSHBUG00000004784) ##24	CBX1 (ENSHBUG00000004762) #25	ENSHBUG00000004737 #26	skap1 (ENSHBUG00000004728) #27	hoxb1b (ENSHBUG00000004719) #28	ENSHBUG00000004711 #31	hoxb5b (ENSHBUG00000004673) #32	hoxb6b (ENSHBUG00000004692)	ttll6 (ENSHBUG00000004655)	ENSHBUG00000004631	snf8 (ENSHBUG00000004590)	ENSHBUG00000004542	ENSHBUG00000004524	chmp2a (ENSHBUG00000004507)	MRM1 (ENSHBUG00000004484)
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	1001																ENSNBRG00000010035 #22
Lyretail cichlid	MODERN SPECIES	317	ENSNBRG00000023244	ormdl3 (ENSNBRG00000023254)	wnt3 (ENSNBRG00000023262)	nsfb (ENSNBRG00000023269)	psmd11b (ENSNBRG00000023279)	cdk5r1b (ENSNBRG00000023289)	MYO1D (ENSNBRG00000023297)	ENSNBRG00000023304	PDK2 (ENSNBRG00000023313)	TBKBP1 (ENSNBRG00000023332)	tbx21 (ENSNBRG00000023348)	osbpl7 (ENSNBRG00000023360) #14	mrpl10 (ENSNBRG00000023367) #15	pnpo (ENSNBRG00000023371) #20	prr15lb (ENSNBRG00000023383) ##21	cdk5rap3 (ENSNBRG00000023398) #22	NFE2L1 (ENSNBRG00000023442) ##24	CBX1 (ENSNBRG00000023447) #25	ENSNBRG00000023453 #26	skap1 (ENSNBRG00000023467) #27	hoxb1b (ENSNBRG00000023474) #28	ENSNBRG00000023478 #31	hoxb5b (ENSNBRG00000023488) #32	hoxb6b (ENSNBRG00000023493)	ttll6 (ENSNBRG00000023500)	ENSNBRG00000023509	snf8 (ENSNBRG00000023515)	gip (ENSNBRG00000023520)	ENSNBRG00000023523	chmp2a (ENSNBRG00000023528)	MRM1 (ENSNBRG00000023533)
Otomorpha	ANCESTRAL SPECIES	1	ENSGT00940000157917.a.a	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.b.b #25	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00390000002866.a	ENSGT00940000164729.a.b	ENSGT00940000177683	ENSGT00940000165156	ENSGT00600000085580	ENSGT00940000161485	ENSGT00990000204711	ENSGT00940000160175.a	ENSGT00940000160595.a.b	ENSGT00940000154537.kb
Clupeiformes	ANCESTRAL SPECIES	5	ENSGT00940000158142	ENSGT00940000155510	ENSGT00940000157917.a.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.a.a	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00390000001723
Atlantic herring	MODERN SPECIES	15	DHX8 (ENSCHAG00000015803)	ENSCHAG00000018519	ormdl3 (ENSCHAG00000018526)	wnt3 (ENSCHAG00000018541)	nsfb (ENSCHAG00000018607)	psmd11b (ENSCHAG00000019372)	cdk5r1b (ENSCHAG00000019504)	MYO1D (ENSCHAG00000019547)	PDK2 (ENSCHAG00000020213)	TBKBP1 (ENSCHAG00000020823)	tbx21 (ENSCHAG00000020835)	osbpl7 (ENSCHAG00000020861) #14	mrpl10 (ENSCHAG00000021277) #15	pnpo (ENSCHAG00000021317) #20	ENSCHAG00000021332 ##21	cdk5rap3 (ENSCHAG00000021352) #22	NFE2L1 (ENSCHAG00000021868) ##24	phkg2 (ENSCHAG00000021900)	ccdc189 (ENSCHAG00000021976)	tmem130 (ENSCHAG00000021985)	ENSCHAG00000021994	nptx2b (ENSCHAG00000022009)	trrap (ENSCHAG00000022036)	FAM20C (ENSCHAG00000023040)	foxl3 (ENSCHAG00000023206)	tom1l2 (ENSCHAG00000023210)	atpaf2 (ENSCHAG00000023232)	GID4 (ENSCHAG00000023244)	noxo1b (ENSCHAG00000023267)	noxo1b (ENSCHAG00000023282)	RNF151 (ENSCHAG00000023295)
Denticle herring	MODERN SPECIES	18	etv4 (ENSDCDG00000017668)	DHX8 (ENSDCDG00000017361)	thraa (ENSDCDG00000015512)	ormdl3 (ENSDCDG00000015446)	wnt3 (ENSDCDG00000015438)	nsfb (ENSDCDG00000013146)	cdk5r1b (ENSDCDG00000013097)	MYO1D (ENSDCDG00000013011)	PDK2 (ENSDCDG00000011078)	TBKBP1 (ENSDCDG00000010966)	tbx21 (ENSDCDG00000010837)	osbpl7 (ENSDCDG00000010329) #14	mrpl10 (ENSDCDG00000010282) #15	pnpo (ENSDCDG00000010278) #20	ENSDCDG00000010275 ##21	cdk5rap3 (ENSDCDG00000010004) #22	NFE2L1 (ENSDCDG00000009981) ##24	phkg2 (ENSDCDG00000009965)	nptx2b (ENSDCDG00000009961)	trrap (ENSDCDG00000007651)	FAM20C (ENSDCDG00000005588)	foxl3 (ENSDCDG00000029403)	tom1l2 (ENSDCDG00000029360)	atpaf2 (ENSDCDG00000029355)	GID4 (ENSDCDG00000029352)	noxo1b (ENSDCDG00000029351)	ENSDCDG00000029345	neurl2 (ENSDCDG00000029338)	msrb1b (ENSDCDG00000029333)	mlst8 (ENSDCDG00000029298)	bricd5 (ENSDCDG00000029294)
Otophysi	ANCESTRAL SPECIES		ENSGT00940000159664	ENSGT01090000260051.b.a.b	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.b.b #25	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00390000002866.a	ENSGT00940000164729.a.b	ENSGT00530000067530	ENSGT00940000165156	ENSGT00600000085580	ENSGT00940000178773	ENSGT00940000161485	ENSGT00990000204711	ENSGT00940000160175.a	ENSGT00940000160595.a.b
Characiphysae	ANCESTRAL SPECIES	1	ENSGT00940000159664	ENSGT01090000260051.b.a.b	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.b.b #25	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00390000002866.a	ENSGT00940000164729.a.b	ENSGT00530000067530	ENSGT00940000165156	ENSGT00600000085580	ENSGT00940000178773	ENSGT00940000161485	ENSGT00990000204711	ENSGT00940000160175.a	ENSGT00940000160595.a.b
Characiphysae_b	ANCESTRAL SPECIES	3	ENSGT00940000159664	ENSGT01090000260051.b.a.b	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.b.b #25	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00390000002866.a	ENSGT00940000164729.a.b	ENSGT00530000067530	ENSGT00940000165156	ENSGT00600000085580	ENSGT00940000178773	ENSGT00940000161485	ENSGT00990000204711	ENSGT00940000160175.a	ENSGT00940000160595.a.b
Characoidei	ANCESTRAL SPECIES	6	ENSGT00940000159664	ENSGT01090000260051.b.a.b	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.b.b #25	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00390000002866.a	ENSGT00940000164729.a.b	ENSGT00940000165156	ENSGT00940000177683	ENSGT00600000085580	ENSGT00940000178773	ENSGT00940000161485	ENSGT00990000204711	ENSGT00940000160175.a	ENSGT00940000160595.a.b
Mexicana tetra	MODERN SPECIES	19	ENSAMXG00000036030	ENSAMXG00000030293	ENSAMXG00000035321	ENSAMXG00000025203	ogfod3 (ENSAMXG00000036703)	psmd11b (ENSAMXG00000010395)	cdk5r1b (ENSAMXG00000010409)	MYO1D (ENSAMXG00000010422)	PDK2 (ENSAMXG00000010438)	TBKBP1 (ENSAMXG00000010457)	tbx21 (ENSAMXG00000010492)	osbpl7 (ENSAMXG00000010519) #14	mrpl10 (ENSAMXG00000040331) #15	pnpo (ENSAMXG00000010544) #20	prr15lb (ENSAMXG00000025204) ##21	cdk5rap3 (ENSAMXG00000010548) #22	ENSAMXG00000041328	NFE2L1 (ENSAMXG00000030120) ##24	ENSAMXG00000041124	cbx1b (ENSAMXG00000036601) #25	phkg2 (ENSAMXG00000040543)	RNF40 (ENSAMXG00000010694)	ENSAMXG00000035525	znf668 (ENSAMXG00000025205)	ENSAMXG00000029663	ENSAMXG00000025206	ENSAMXG00000037059	cd37 (ENSAMXG00000010877)	gall (ENSAMXG00000041060)	valopb (ENSAMXG00000010897)	gabrz (ENSAMXG00000041040)
Red-bellied piranha	MODERN SPECIES	42	ENSPNAG00000000942	ENSPNAG00000008363	ENSPNAG00000000932	ogfod3 (ENSPNAG00000000928)	psmd11b (ENSPNAG00000000922)	cdk5r1b (ENSPNAG00000000911)	MYO1D (ENSPNAG00000000903)	ENSPNAG00000008311	PDK2 (ENSPNAG00000008307)	TBKBP1 (ENSPNAG00000008294)	tbx21 (ENSPNAG00000008289)	osbpl7 (ENSPNAG00000000854) #14	mrpl10 (ENSPNAG00000000847) #15	pnpo (ENSPNAG00000000845) #20	prr15lb (ENSPNAG00000008267) ##21	cdk5rap3 (ENSPNAG00000008263) #22	ENSPNAG00000008256	NFE2L1 (ENSPNAG00000008250) ##24	cbx1b (ENSPNAG00000000806) #25	phkg2 (ENSPNAG00000008236)	ccdc189 (ENSPNAG00000000790)	RNF40 (ENSPNAG00000008210)	ENSPNAG00000000750	znf668 (ENSPNAG00000008178)	ENSPNAG00000000742	ENSPNAG00000000738	ENSPNAG00000000733	cd37 (ENSPNAG00000008159)	gall (ENSPNAG00000008151)	valopb (ENSPNAG00000008142)	gabrz (ENSPNAG00000000698)
Electric eel	MODERN SPECIES	369									TBKBP1 (ENSEEEG00000006353)	ENSEEEG00000006352	tbx21 (ENSEEEG00000006349)	osbpl7 (ENSEEEG00000006337) #14	mrpl10 (ENSEEEG00000006332) #15	pnpo (ENSEEEG00000006316) #20	prr15lb (ENSEEEG00000006315) ##21	cdk5rap3 (ENSEEEG00000006028) #22	NFE2L1 (ENSEEEG00000006006) ##24	cbx1b (ENSEEEG00000006003) #25	phkg2 (ENSEEEG00000005928)	ccdc189 (ENSEEEG00000005919)	RNF40 (ENSEEEG00000005910)	ENSEEEG00000005904	ENSEEEG00000005903	znf668 (ENSEEEG00000005902)	ENSEEEG00000005901	cd37 (ENSEEEG00000005899)	gall (ENSEEEG00000005897)	valopb (ENSEEEG00000005578)	gabrz (ENSEEEG00000005560)	ENSEEEG00000005557	mxtx2 (ENSEEEG00000005556)
Channel catfish	MODERN SPECIES	4	ENSIPUG00000018713	ENSIPUG00000018711	ogfod3 (ENSIPUG00000018706)	psmd11b (ENSIPUG00000018634)	cdk5r1b (ENSIPUG00000018623)	MYO1D (ENSIPUG00000018549)	ENSIPUG00000018539	ENSIPUG00000018536	PDK2 (ENSIPUG00000018521)	tbkbp1 (ENSIPUG00000018504)	tbx21 (ENSIPUG00000018470)	osbpl7 (ENSIPUG00000018363) #14	mrpl10 (ENSIPUG00000018330) #15	pnpo (ENSIPUG00000018311) #20	prr15lb (ENSIPUG00000018303) ##21	cdk5rap3 (ENSIPUG00000018270) #22	ENSIPUG00000018255	NFE2L1 (ENSIPUG00000018201) ##24	cbx1 (ENSIPUG00000018189) #25	ccdc189 (ENSIPUG00000018176)	PHKG2 (ENSIPUG00000018153)	RNF40 (ENSIPUG00000018115)	ENSIPUG00000018102	znf668 (ENSIPUG00000018095)	ENSIPUG00000018093	ENSIPUG00000018087	ENSIPUG00000018080	CD82 (ENSIPUG00000018027)	gal (ENSIPUG00000018006)	valopb (ENSIPUG00000017998)	gabrz (ENSIPUG00000017975)
Cyprinoidei	ANCESTRAL SPECIES	18	ENSGT00960000186809	ENSGT00940000159664	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b #14	ENSGT00390000000603 #15	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##21	ENSGT00390000000713 #22	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a ##24	ENSGT00940000154152.b.b #25	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00390000002866.a	ENSGT00940000164729.a.b	ENSGT00940000165156	ENSGT00600000085580	ENSGT00940000178773	ENSGT00940000161485	ENSGT00990000204711	ENSGT00940000160175.a	ENSGT00940000160595.a.b	ENSGT00940000154537.kb
Zebrafish	MODERN SPECIES	3	CACNA1G (ENSDARG00000089913)	ENSDARG00000009624	ENSDARG00000115189	ogfod3 (ENSDARG00000078481)	psmd11b (ENSDARG00000005134)	cdk5r1b (ENSDARG00000045087)	MYO1D (ENSDARG00000036863)	ENSDARG00000088794	PDK2 (ENSDARG00000020876)	TBKBP1 (ENSDARG00000061473)	tbx21 (ENSDARG00000004473)	osbpl7 (ENSDARG00000012981) #14	mrpl10 (ENSDARG00000045091) #15	pnpo (ENSDARG00000017612) #20	prr15lb (ENSDARG00000029308) ##21	cdk5rap3 (ENSDARG00000045092) #22	ENSDARG00000096711	nfe2l1b (ENSDARG00000076533) ##24	cbx1b (ENSDARG00000054442) #25	phkg2 (ENSDARG00000054208)	ccdc189 (ENSDARG00000096777)	RNF40 (ENSDARG00000054201)	ENSDARG00000061424	znf668 (ENSDARG00000025226)	ENSDARG00000086255	ENSDARG00000096721	cd37 (ENSDARG00000075515)	gall (ENSDARG00000096760)	valopb (ENSDARG00000054181)	gabrz (ENSDARG00000094512)	ENSDARG00000054177
Cyprininae	ANCESTRAL SPECIES	64	ENSGT00390000004836.a	ENSGT00940000159664.d	ENSGT00940000156819.a.b.d.a	ENSGT00940000156819.a.b.c.b	ENSGT00390000005895.a	ENSGT00530000063301.a.a.c.a.j	ENSGT00390000008812.b.b.a.g	ENSGT00940000157411.a	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a.b	ENSGT00940000153704.B.c.a	ENSGT00940000166447.b	ENSGT00940000157439.b.a #14	ENSGT00390000011219.e.b #20	ENSGT00940000154534.b.b.f ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a.f ##24	ENSGT00940000154152.b.b.b #25	ENSGT00940000160435.c	ENSGT00390000002866.a.b	ENSGT00940000164729.a.b.h	ENSGT00940000165156.f	ENSGT00600000085580	ENSGT00940000161485	ENSGT00990000204711.b	ENSGT01030000234549.a.b.t.b	ENSGT00940000164278.d.b	ENSGT00940000160175.a.a	ENSGT00940000160595.a.b.b	ENSGT00940000154537.kb.a	ENSGT00940000153195.B.n
Goldfish	MODERN SPECIES	3	DHX8 (ENSCARG00000009308)	CACNA1G (ENSCARG00000005904)	ENSCARG00000005702	ENSCARG00000005695	ogfod3 (ENSCARG00000005679)	psmd11b (ENSCARG00000005665)	cdk5r1b (ENSCARG00000005645)	MYO1D (ENSCARG00000003148)	PDK2 (ENSCARG00000002696)	TBKBP1 (ENSCARG00000002654)	tbx21 (ENSCARG00000002646)	osbpl7 (ENSCARG00000002627) #14	mrpl10 (ENSCARG00000002611) #15	pnpo (ENSCARG00000002600) #20	prr15lb (ENSCARG00000002595) ##21	cdk5rap3 (ENSCARG00000002583) #22	NFE2L1 (ENSCARG00000002569) ##24	cbx1b (ENSCARG00000002543) #25	ENSCARG00000002537	phkg2 (ENSCARG00000002488)	RNF40 (ENSCARG00000002345)	ENSCARG00000002279	znf668 (ENSCARG00000002275)	ENSCARG00000002268	cd37 (ENSCARG00000002261)	gall (ENSCARG00000002254)	valopb (ENSCARG00000002242)	gabrz (ENSCARG00000002231)	ENSCARG00000002222	SH2D4B (ENSCARG00000002161)	bms1 (ENSCARG00000001993)
Cyprininae_a	ANCESTRAL SPECIES	18	ENSGT00390000004836.a	ENSGT00940000159664.d	ENSGT00940000156819.a.b.d.a	ENSGT00940000156819.a.b.c.b	ENSGT00390000005895.a	ENSGT00530000063301.a.a.c.a.j	ENSGT00390000008812.b.b.a.g	ENSGT00940000157411.a	ENSGT00940000156038.a.b.b.c	ENSGT01030000234646.B.a.a.a.a.a.b	ENSGT00940000153704.B.c.a	ENSGT00940000166447.b	ENSGT00940000157439.b.a #14	ENSGT00390000011219.e.b #20	ENSGT00940000154534.b.b.f ##21	ENSGT00390000000713 #22	ENSGT00950000182892.a.b.a.b.a.f ##24	ENSGT00940000154152.b.b.b #25	ENSGT00940000160435.c	ENSGT00390000002866.a.b	ENSGT00940000164729.a.b.h	ENSGT00940000165156.f	ENSGT00600000085580	ENSGT00940000161485	ENSGT00990000204711.b	ENSGT01030000234549.a.b.t.b	ENSGT00940000164278.d.b	ENSGT00940000160175.a.a	ENSGT00940000160595.a.b.b	ENSGT00940000154537.kb.a	ENSGT00940000153195.B.n
Common carp reference	MODERN SPECIES	25	etv4 (ENSCCRG00000021484)	DHX8 (ENSCCRG00000065848)	ENSCCRG00000023174	ENSCCRG00000078541	ENSCCRG00000053281	ENSCCRG00000026002	ogfod3 (ENSCCRG00000070519)	psmd11b (ENSCCRG00000024625)	cdk5r1b (ENSCCRG00000068741)	ENSCCRG00000076292	ENSCCRG00000027898	ENSCCRG00000063984	TBKBP1 (ENSCCRG00000077031)	tbx21 (ENSCCRG00000027877)	osbpl7 (ENSCCRG00000027864) #14	cdk5rap3 (ENSCCRG00000027849) #22	prr15lb (ENSCCRG00000058633) ##21	NFE2L1 (ENSCCRG00000027844) ##24	phkg2 (ENSCCRG00000070942)	cbx1b (ENSCCRG00000030872) #25	ccdc189 (ENSCCRG00000030884)	RNF40 (ENSCCRG00000030970)	znf668 (ENSCCRG00000031067)	ENSCCRG00000058890	ENSCCRG00000078537	cd37 (ENSCCRG00000018649)	gall (ENSCCRG00000071394)	ENSCCRG00000055797	valopb (ENSCCRG00000078822)	gabrz (ENSCCRG00000059296)	ENSCCRG00000063866
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	3478																cdk5rap3 (ENSSGRG00000004575) #22
Golden-line barbel	MODERN SPECIES	887											tbx21 (ENSSGRG00000046036)	osbpl7 (ENSSGRG00000046037) #14	mrpl10 (ENSSGRG00000046038) #15	pnpo (ENSSGRG00000046039) #20	prr15lb (ENSSGRG00000046068) ##21	ENSSGRG00000046070 #22	NFE2L1 (ENSSGRG00000046100) ##24	phkg2 (ENSSGRG00000046074)	cbx1b (ENSSGRG00000046102) #25	ccdc189 (ENSSGRG00000046110)	RNF40 (ENSSGRG00000046152)	ENSSGRG00000047114	znf668 (ENSSGRG00000047115)	ENSSGRG00000047119	cd37 (ENSSGRG00000047122)	valopb (ENSSGRG00000047125)	gabrz (ENSSGRG00000047127)	ENSSGRG00000047128	ENSSGRG00000047129	mxtx2 (ENSSGRG00000047130)	bms1 (ENSSGRG00000047142)
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	5	ENSECRG00000021760	osbpl7 (ENSECRG00000021785) #14	tbx21 (ENSECRG00000021828)	TBKBP1 (ENSECRG00000021849)	kpnb1 (ENSECRG00000021968)	npepps (ENSECRG00000022066)	ENSECRG00000022086	ENSECRG00000022093	mrpl45 (ENSECRG00000022099)	ENSECRG00000022119	socs7 (ENSECRG00000022134)	sp2 (ENSECRG00000022144) #19	pnpo (ENSECRG00000022161) #20	prr15la (ENSECRG00000022170) ##21	CDK5RAP3 (ENSECRG00000022184) #22	ENSECRG00000022194 #22	copz2 (ENSECRG00000022208) #23	NFE2L1 (ENSECRG00000022225) ##24	cbx1b (ENSECRG00000022234) #25	SNX11 (ENSECRG00000022243) #26	skap1 (ENSECRG00000022254) #27	hoxb1b (ENSECRG00000022268) #28	hoxb2a (ENSECRG00000022274) #29	hoxb3a (ENSECRG00000022280) #31	hoxb4a (ENSECRG00000022286) #30	hoxb5b (ENSECRG00000022297) #32	hoxb6a (ENSECRG00000022304) #33	hoxb7a (ENSECRG00000022310) #34	hoxb8a (ENSECRG00000022316) #35	hoxb9a (ENSECRG00000022323) #36	hoxb10a (ENSECRG00000022327)
Reedfish	MODERN SPECIES	5	ENSECRG00000021739 #16	ENSECRG00000021760	osbpl7 (ENSECRG00000021785) #14	tbx21 (ENSECRG00000021828)	TBKBP1 (ENSECRG00000021849)	kpnb1 (ENSECRG00000021968)	npepps (ENSECRG00000022066)	ENSECRG00000022086	ENSECRG00000022093	mrpl45 (ENSECRG00000022099)	ENSECRG00000022119	socs7 (ENSECRG00000022134)	sp2 (ENSECRG00000022144) #19	pnpo (ENSECRG00000022161) #20	prr15la (ENSECRG00000022170) ##21	CDK5RAP3 (ENSECRG00000022184) #22	ENSECRG00000022194 #22	copz2 (ENSECRG00000022208) #23	NFE2L1 (ENSECRG00000022225) ##24	cbx1b (ENSECRG00000022234) #25	SNX11 (ENSECRG00000022243) #26	skap1 (ENSECRG00000022254) #27	hoxb1b (ENSECRG00000022268) #28	hoxb2a (ENSECRG00000022274) #29	hoxb3a (ENSECRG00000022280) #31	hoxb4a (ENSECRG00000022286) #30	hoxb5b (ENSECRG00000022297) #32	hoxb6a (ENSECRG00000022304) #33	hoxb7a (ENSECRG00000022310) #34	hoxb8a (ENSECRG00000022316) #35	hoxb9a (ENSECRG00000022323) #36
Elephant shark	MODERN SPECIES	1607							ENSCMIG00000015961	ENSCMIG00000015957	KLHL10 (ENSCMIG00000015954)	klhl11 (ENSCMIG00000015952)	aclya (ENSCMIG00000015922)	odad4 (ENSCMIG00000015895)	SP2 (ENSCMIG00000015886) #19	pnpo (ENSCMIG00000015879) #20	prr15l (ENSCMIG00000015876) #21	cdk5rap3 (ENSCMIG00000015866) #22	copz2 (ENSCMIG00000015857) #23	nfe2l1a (ENSCMIG00000015855) #24	cbx1b (ENSCMIG00000015851) #25	ENSCMIG00000015847	ENSCMIG00000015845 #26	ENSCMIG00000015839	hoxb1b (ENSCMIG00000015833) #28	ENSCMIG00000015831	hoxb3a (ENSCMIG00000015830) #31	ENSCMIG00000015823 #27	ENSCMIG00000015821	hoxb5b (ENSCMIG00000015819) #32	hoxb6a (ENSCMIG00000015818) #33	hoxb8 (ENSCMIG00000015816) #35	hoxb9a (ENSCMIG00000015815) #36
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000000713 #22
Hagfish	MODERN SPECIES	1334										ENSEBUG00000004160	hacd1 (ENSEBUG00000005153)	ENSEBUG00000009436	ENSEBUG00000016857	ENSEBUG00000014966	ENSEBUG00000010794	cdk5rap3 (ENSEBUG00000010254) #22	ENSEBUG00000000369	ENSEBUG00000011315	Hox13II (ENSEBUG00000014748)