Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #24	ENSGT00910000147041	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #24	ENSGT00910000147041	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145.xc ##28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Pecora	ANCESTRAL SPECIES	6	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145.xc ##28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Yarkand deer	MODERN SPECIES	3	ENSCHYG00000018101 #7	ENSCHYG00000017784 #8	NOX5 (ENSCHYG00000017570) #9	SPESP1 (ENSCHYG00000017531) #10	ENSCHYG00000017234 #11	CORO2B (ENSCHYG00000016934) #12	ITGA11 (ENSCHYG00000014651) #13	FEM1B (ENSCHYG00000014524) #14	CLN6 (ENSCHYG00000014290) #15	CALML4 (ENSCHYG00000014198) #16	PIAS1 (ENSCHYG00000013992) #17	SKOR1 (ENSCHYG00000013681) #18	MAP2K5 (ENSCHYG00000012261) #19	C15orf61 (ENSCHYG00000012160) #20	IQCH (ENSCHYG00000011825) #21	AAGAB (ENSCHYG00000011610) #22	SMAD3 (ENSCHYG00000011473) #23	SMAD6 (ENSCHYG00000011380) #24	ENSCHYG00000011323 #25	LCTL (ENSCHYG00000011283) #26	ZWILCH (ENSCHYG00000010774) #27	ENSCHYG00000010506 #28	SNAPC5 (ENSCHYG00000010450) #29	ENSCHYG00000010432 #30	MAP2K1 (ENSCHYG00000010364) #31	TIPIN (ENSCHYG00000010297) #32	DIS3L (ENSCHYG00000010099) #33	MEGF11 (ENSCHYG00000009296) #34	ENSCHYG00000009145 #35	ENSCHYG00000009117 #36	DENND4A (ENSCHYG00000008838) #37
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145.xc ##28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Siberian musk deer	MODERN SPECIES	70	GLCE (ENSMMSG00000002545)	NOX5 (ENSMMSG00000002533) #9	ENSMMSG00000002508	ENSMMSG00000002461 #11	ENSMMSG00000002437	CORO2B (ENSMMSG00000002385) #12	ITGA11 (ENSMMSG00000002350) #13	FEM1B (ENSMMSG00000002327) #14	CLN6 (ENSMMSG00000002230) #15	CALML4 (ENSMMSG00000002206) #16	PIAS1 (ENSMMSG00000002174) #17	SKOR1 (ENSMMSG00000002112) #18	MAP2K5 (ENSMMSG00000001850) #19	C15orf61 (ENSMMSG00000001796) #20	IQCH (ENSMMSG00000001575) #21	AAGAB (ENSMMSG00000001517) #22	SMAD3 (ENSMMSG00000001493) #23	SMAD6 (ENSMMSG00000001473) #24	LCTL (ENSMMSG00000001442) #26	ZWILCH (ENSMMSG00000001358) #27	ENSMMSG00000001277 #28	SNAPC5 (ENSMMSG00000001249) #29	MAP2K1 (ENSMMSG00000001210) #31	TIPIN (ENSMMSG00000001178) #32	DIS3L (ENSMMSG00000001148) #33	MEGF11 (ENSMMSG00000001023) #34	ENSMMSG00000000971 #35	DENND4A (ENSMMSG00000000845) #37	ENSMMSG00000000783	SLC24A1 (ENSMMSG00000000735)	INTS14 (ENSMMSG00000000581)
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145.xc ##28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Caprinae	ANCESTRAL SPECIES	30	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145.xc ##28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764.o #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Goat	DUPLICATION
Goat	MODERN SPECIES	1	NOX5 (ENSCHIG00000023480) #9	SPESP1 (ENSCHIG00000013213) #10	ENSCHIG00000011806 #11	CORO2B (ENSCHIG00000023253) #12	ITGA11 (ENSCHIG00000025296) #13	FEM1B (ENSCHIG00000023393) #14	CLN6 (ENSCHIG00000024128) #15	CALML4 (ENSCHIG00000005207) #16	PIAS1 (ENSCHIG00000014001) #17	ENSCHIG00000003884	ENSCHIG00000010951	SKOR1 (ENSCHIG00000017580) #18	MAP2K5 (ENSCHIG00000022039) #19	C15orf61 (ENSCHIG00000026630) #20	IQCH (ENSCHIG00000009034) #21	ENSCHIG00000015028 #22	SMAD3 (ENSCHIG00000013774) #23	SMAD6 (ENSCHIG00000012651) #24	LCTL (ENSCHIG00000017181) #26	ZWILCH (ENSCHIG00000015830) #27	RPL4 (ENSCHIG00000012421) ##28	SNAPC5 (ENSCHIG00000011315) #29	MAP2K1 (ENSCHIG00000021340) #31	ENSCHIG00000000481 #32	DIS3L (ENSCHIG00000009744) #33	MEGF11 (ENSCHIG00000023140) #34	ENSCHIG00000006809	ENSCHIG00000012183 #35	DENND4A (ENSCHIG00000024015) #37	ENSCHIG00000015128	SLC24A1 (ENSCHIG00000023644)
Goat	MODERN SPECIES	9	SHKBP1 (ENSCHIG00000026431)	SPTBN4 (ENSCHIG00000015236)	BLVRB (ENSCHIG00000021831)	SERTAD3 (ENSCHIG00000005317)	SERTAD1 (ENSCHIG00000012650)	PRX (ENSCHIG00000026808)	HIPK4 (ENSCHIG00000017836)	PLD3 (ENSCHIG00000024228)	C19orf47 (ENSCHIG00000027186)	AKT2 (ENSCHIG00000015049)	TTC9B (ENSCHIG00000007381)	MAP3K10 (ENSCHIG00000019302)	ENSCHIG00000018631	ZNF546 (ENSCHIG00000011952)	PSMC4 (ENSCHIG00000016431)	ENSCHIG00000012448 #22	ENSCHIG00000022668	FBL (ENSCHIG00000021562)	DYRK1B (ENSCHIG00000013926)	ENSCHIG00000020003	ENSCHIG00000015792	LGALS15 (ENSCHIG00000020836)	LGALS16 (ENSCHIG00000024926)	EID2 (ENSCHIG00000007961)	ENSCHIG00000011678	ENSCHIG00000018741	DLL3 (ENSCHIG00000009219)	TIMM50 (ENSCHIG00000003131)	SUPT5H (ENSCHIG00000023821)	ENSCHIG00000005676	RPS16 (ENSCHIG00000024160)
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	23	KIF23 (ENSOARG00020013394) #8	GLCE (ENSOARG00020013246)	NOX5 (ENSOARG00020012967) #9	SPESP1 (ENSOARG00020012911) #10	ENSOARG00020012822 #11	CORO2B (ENSOARG00020012576) #12	ITGA11 (ENSOARG00020012015) #13	FEM1B (ENSOARG00020011984) #14	CLN6 (ENSOARG00020011715) #15	CALML4 (ENSOARG00020011634) #16	PIAS1 (ENSOARG00020011172) #17	SKOR1 (ENSOARG00020010969) #18	MAP2K5 (ENSOARG00020009665) #19	C15orf61 (ENSOARG00020009584) #20	IQCH (ENSOARG00020008820) #21	ENSOARG00020008703 #22	SMAD3 (ENSOARG00020008589) #23	SMAD6 (ENSOARG00020008552) #24	LCTL (ENSOARG00020008384) #26	ZWILCH (ENSOARG00020008203) #27	RPL4 (ENSOARG00020008040) ##28	SNAPC5 (ENSOARG00020007973) #29	MAP2K1 (ENSOARG00020007890) #31	TIPIN (ENSOARG00020007825) #32	DIS3L (ENSOARG00020007756) #33	MEGF11 (ENSOARG00020006928) #34	ENSOARG00020006812 #35	DENND4A (ENSOARG00020006221) #37	SLC24A1 (ENSOARG00020006188)	INTS14 (ENSOARG00020006021)	HACD3 (ENSOARG00020005830)
Rambouillet Sheep	MODERN SPECIES	5	SHKBP1 (ENSOARG00020013843)	SPTBN4 (ENSOARG00020013943)	BLVRB (ENSOARG00020014151)	SERTAD3 (ENSOARG00020014364)	SERTAD1 (ENSOARG00020014390)	PRX (ENSOARG00020014413)	HIPK4 (ENSOARG00020014458)	PLD3 (ENSOARG00020014520)	C19orf47 (ENSOARG00020014593)	AKT2 (ENSOARG00020014736)	CCNP (ENSOARG00020014872)	TTC9B (ENSOARG00020015008)	MAP3K10 (ENSOARG00020015050)	ZNF546 (ENSOARG00020015127)	PSMC4 (ENSOARG00020015236)	ENSOARG00020015314 #22	ENSOARG00020015383	ENSOARG00020015769	FBL (ENSOARG00020015836)	DYRK1B (ENSOARG00020015979)	ENSOARG00020016126	ENSOARG00020016175	ENSOARG00020016268	CYP2S1 (ENSOARG00020016415)	AXL (ENSOARG00020016520)	HNRNPUL1 (ENSOARG00020016689)	CCDC97 (ENSOARG00020017796)	TGFB1 (ENSOARG00020017842)	B9D2 (ENSOARG00020017895)	TMEM91 (ENSOARG00020017943)	EXOSC5 (ENSOARG00020018062)
Bovinae	ANCESTRAL SPECIES	33	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145.xc ##28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914.ib #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
American bison	MODERN SPECIES	2972	KIF23 (ENSBBBG00000001518) #8	PAQR5 (ENSBBBG00000009457) #7	GLCE (ENSBBBG00000009453)	NOX5 (ENSBBBG00000009452) #9	SPESP1 (ENSBBBG00000001512) #10	ENSBBBG00000009447 #11	CORO2B (ENSBBBG00000009445) #12	ITGA11 (ENSBBBG00000009443) #13	FEM1B (ENSBBBG00000009440) #14	CLN6 (ENSBBBG00000001505) #15	CALML4 (ENSBBBG00000009437) #16	PIAS1 (ENSBBBG00000009435) #17	MAP2K5 (ENSBBBG00000009430) #19	C15orf61 (ENSBBBG00000009428) #20	IQCH (ENSBBBG00000009426) #21	AAGAB (ENSBBBG00000009422) #22	SMAD3 (ENSBBBG00000009419) #23	SMAD6 (ENSBBBG00000001493) #24	LCTL (ENSBBBG00000009415) #26	ZWILCH (ENSBBBG00000007486) #27	RPL4 (ENSBBBG00000009410) ##28	SNAPC5 (ENSBBBG00000009405) #29	MAP2K1 (ENSBBBG00000009402) #31	ENSBBBG00000009401	DIS3L (ENSBBBG00000001485) #33	MEGF11 (ENSBBBG00000009393) #34	ENSBBBG00000001484 #35	DENND4A (ENSBBBG00000009388) #37	SLC24A1 (ENSBBBG00000009385)	INTS14 (ENSBBBG00000001482)	HACD3 (ENSBBBG00000009384)
Bos	ANCESTRAL SPECIES	31	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145.xc.e.a ##28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914.ib #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Bos_b	ANCESTRAL SPECIES	28	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145.xc.e.a ##28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914.ib #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Hybrid Bos Indicus	MODERN SPECIES	1	PAQR5 (ENSBIXG00005030752) #7	GLCE (ENSBIXG00005030727)	NOX5 (ENSBIXG00005030704) #9	SPESP1 (ENSBIXG00005030688) #10	ENSBIXG00005030667 #11	CORO2B (ENSBIXG00005030625) #12	ITGA11 (ENSBIXG00005030585) #13	FEM1B (ENSBIXG00005030567) #14	ENSBIXG00005030548 #15	CALML4 (ENSBIXG00005030510) #16	PIAS1 (ENSBIXG00005030503) #17	SKOR1 (ENSBIXG00005030471) #18	MAP2K5 (ENSBIXG00005030309) #19	C15orf61 (ENSBIXG00005030179) #20	IQCH (ENSBIXG00005030120) #21	AAGAB (ENSBIXG00005030085) #22	SMAD3 (ENSBIXG00005030065) #23	SMAD6 (ENSBIXG00005030012) #24	LCTL (ENSBIXG00005029961) #26	ZWILCH (ENSBIXG00005029921) #27	ENSBIXG00005029889 ##28	SNAPC5 (ENSBIXG00005029881) #29	ENSBIXG00005029869 #31	TIPIN (ENSBIXG00005029852) #32	DIS3L (ENSBIXG00005029839) #33	MEGF11 (ENSBIXG00005029582) #34	RAB11A (ENSBIXG00005029469) #35	ENSBIXG00005029457	SLC24A1 (ENSBIXG00005029443)	INTS14 (ENSBIXG00005029402)	HACD3 (ENSBIXG00005029324)
Cow	MODERN SPECIES	1	KIF23 (ENSBTAG00000009983) #8	PAQR5 (ENSBTAG00000020352) #7	GLCE (ENSBTAG00000001405)	NOX5 (ENSBTAG00000009030) #9	SPESP1 (ENSBTAG00000005994) #10	ANP32A (ENSBTAG00000012365) #11	CORO2B (ENSBTAG00000012681) #12	ITGA11 (ENSBTAG00000008380) #13	FEM1B (ENSBTAG00000008378) #14	CLN6 (ENSBTAG00000005565) #15	CALML4 (ENSBTAG00000025822) #16	PIAS1 (ENSBTAG00000005564) #17	MAP2K5 (ENSBTAG00000000218) #19	C10H15orf61 (ENSBTAG00000045628) #20	IQCH (ENSBTAG00000013638) #21	AAGAB (ENSBTAG00000040368) #22	SMAD3 (ENSBTAG00000012599) #23	SMAD6 (ENSBTAG00000000625) #24	ENSBTAG00000050356 #25	LCTL (ENSBTAG00000005214) #26	ZWILCH (ENSBTAG00000005213) #27	RPL4 (ENSBTAG00000005211) ##28	SNAPC5 (ENSBTAG00000005210) #29	MAP2K1 (ENSBTAG00000033983) #31	TIPIN (ENSBTAG00000000372) #32	DIS3L (ENSBTAG00000000371) #33	MEGF11 (ENSBTAG00000034140) #34	RAB11A (ENSBTAG00000018959) #35	DENND4A (ENSBTAG00000017095) #37	SLC24A1 (ENSBTAG00000025826)	INTS14 (ENSBTAG00000015158)
Bos_a	ANCESTRAL SPECIES	40	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145.xc.e.a ##28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34
Domestic yak	MODERN SPECIES	2	GLCE (ENSBGRG00000020997)	NOX5 (ENSBGRG00000021070) #9	ENSBGRG00000021382 #10	ENSBGRG00000021463 #11	CORO2B (ENSBGRG00000021747) #12	ITGA11 (ENSBGRG00000021881) #13	FEM1B (ENSBGRG00000022079) #14	CLN6 (ENSBGRG00000022143) #15	CALML4 (ENSBGRG00000022400) #16	PIAS1 (ENSBGRG00000022493) #17	SKOR1 (ENSBGRG00000022855) #18	MAP2K5 (ENSBGRG00000023013) #19	ENSBGRG00000023428	ENSBGRG00000023451 #20	IQCH (ENSBGRG00000023490) #21	AAGAB (ENSBGRG00000023783) #22	SMAD3 (ENSBGRG00000023965) #23	SMAD6 (ENSBGRG00000024050) #24	LCTL (ENSBGRG00000024229) #26	ZWILCH (ENSBGRG00000024356) #27	ENSBGRG00000024489 ##28	SNAPC5 (ENSBGRG00000024649) #29	MAP2K1 (ENSBGRG00000024678) #31	TIPIN (ENSBGRG00000024730) #32	DIS3L (ENSBGRG00000024760) #33	MEGF11 (ENSBGRG00000024819) #34	ENSBGRG00000024884 #35	DENND4A (ENSBGRG00000024953) #37	ENSBGRG00000025078	SLC24A1 (ENSBGRG00000025095)	INTS14 (ENSBGRG00000025180)
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	331											MAP3K10 (ENSBMUG00000015672)	ENSBMUG00000015645	ENSBMUG00000015632	ENSBMUG00000015620	PSMC4 (ENSBMUG00000015610)	ENSBMUG00000015590 #22	ENSBMUG00000015581	FBL (ENSBMUG00000015541)	ENSBMUG00000015530	ENSBMUG00000015486	ENSBMUG00000015465	EID2 (ENSBMUG00000015450)	DLL3 (ENSBMUG00000015428)	TIMM50 (ENSBMUG00000015398)	SUPT5H (ENSBMUG00000015326)	ENSBMUG00000015253	ENSBMUG00000015236	PLEKHG2 (ENSBMUG00000015178)	ZFP36 (ENSBMUG00000015152)	MED29 (ENSBMUG00000015140)	PAF1 (ENSBMUG00000015122)
Wild yak	MODERN SPECIES	552					ENSBMUG00000006692 #11	CORO2B (ENSBMUG00000006646) #12	ITGA11 (ENSBMUG00000006621) #13	FEM1B (ENSBMUG00000006589) #14	CLN6 (ENSBMUG00000006571) #15	CALML4 (ENSBMUG00000006499) #16	PIAS1 (ENSBMUG00000006486) #17	SKOR1 (ENSBMUG00000006456) #18	MAP2K5 (ENSBMUG00000006406) #19	ENSBMUG00000006346	IQCH (ENSBMUG00000006265) #21	AAGAB (ENSBMUG00000006202) #22	SMAD3 (ENSBMUG00000006115) #23	ENSBMUG00000006090 #24	LCTL (ENSBMUG00000006040) #26	ZWILCH (ENSBMUG00000006013) #27	ENSBMUG00000005950 ##28	SNAPC5 (ENSBMUG00000005936) #29	MAP2K1 (ENSBMUG00000005924) #31	TIPIN (ENSBMUG00000005904) #32	DIS3L (ENSBMUG00000005883) #33
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145.xc.b ##28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000012563.i.a	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00390000000134.b.p.b	ENSGT00940000158146 #24	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145.xc.b ##28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000012563.i.a	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00390000000134.b.p.b	ENSGT00940000158146 #24	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145.xc.b ##28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000012563.i.a	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT01010000222830.d.a	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00390000000134.b.p.b	ENSGT00940000158146 #24	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145.xc.b ##28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000012563.i.a	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37
Monodontidae	ANCESTRAL SPECIES	27	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00390000005300	ENSGT00940000164579.e.b	ENSGT00390000008748.b	ENSGT00860000136093.c	ENSGT00940000157725	ENSGT00940000158086	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00390000000134.b.p.b	ENSGT00940000158146 #24	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145.xc.b ##28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000012563.i.a	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37
Narwhal	MODERN SPECIES	308	GLCE (ENSMMNG00015008649)	ENSMMNG00015008639	SPESP1 (ENSMMNG00015008626) #10	ENSMMNG00015008598 #11	CORO2B (ENSMMNG00015008567) #12	ITGA11 (ENSMMNG00015008533) #13	FEM1B (ENSMMNG00015008513) #14	CLN6 (ENSMMNG00015008469) #15	CALML4 (ENSMMNG00015008408) #16	PIAS1 (ENSMMNG00015008373) #17	ENSMMNG00015008358	SKOR1 (ENSMMNG00015008331) #18	MAP2K5 (ENSMMNG00015008216) #19	C15orf61 (ENSMMNG00015008139) #20	IQCH (ENSMMNG00015008052) #21	AAGAB (ENSMMNG00015007942) #22	SMAD3 (ENSMMNG00015007909) #23	ENSMMNG00015007889	SMAD6 (ENSMMNG00015007869) #24	ENSMMNG00015007816 #25	LCTL (ENSMMNG00015007784) #26	ZWILCH (ENSMMNG00015007746) #27	ENSMMNG00015007652 ##28	SNAPC5 (ENSMMNG00015007601) #29	MAP2K1 (ENSMMNG00015007579) #31	ENSMMNG00015007536	TIPIN (ENSMMNG00015007474) #32	DIS3L (ENSMMNG00015007393) #33	MEGF11 (ENSMMNG00015007280) #34	RAB11A (ENSMMNG00015007170) #35	DENND4A (ENSMMNG00015007114) #37
Beluga whale	MODERN SPECIES	20	GLCE (ENSDLEG00000000492)	SPESP1 (ENSDLEG00000000475) #10	ANP32A (ENSDLEG00000000431) #11	CORO2B (ENSDLEG00000000393) #12	ITGA11 (ENSDLEG00000000304) #13	FEM1B (ENSDLEG00000011544) #14	CLN6 (ENSDLEG00000011495) #15	CALML4 (ENSDLEG00000011480) #16	PIAS1 (ENSDLEG00000011410) #17	ENSDLEG00000011393	ENSDLEG00000011378	SKOR1 (ENSDLEG00000011320) #18	MAP2K5 (ENSDLEG00000011046) #19	CUNH15orf61 (ENSDLEG00000010984) #20	IQCH (ENSDLEG00000010864) #21	AAGAB (ENSDLEG00000010803) #22	SMAD3 (ENSDLEG00000010707) #23	ENSDLEG00000010689	SMAD6 (ENSDLEG00000010676) #24	ENSDLEG00000010657	ENSDLEG00000010647 #25	LCTL (ENSDLEG00000010607) #26	ZWILCH (ENSDLEG00000010482) #27	RPL4 (ENSDLEG00000010430) ##28	SNAPC5 (ENSDLEG00000010421) #29	MAP2K1 (ENSDLEG00000010364) #31	ENSDLEG00000010343	TIPIN (ENSDLEG00000010313) #32	DIS3L (ENSDLEG00000009982) #33	MEGF11 (ENSDLEG00000009720) #34	RAB11A (ENSDLEG00000009643) #35
Vaquita	MODERN SPECIES	11	GLCE (ENSPSNG00000001258)	ENSPSNG00000001278	SPESP1 (ENSPSNG00000001290) #10	ENSPSNG00000001312 #11	CORO2B (ENSPSNG00000001338) #12	ITGA11 (ENSPSNG00000001465) #13	FEM1B (ENSPSNG00000001608) #14	CLN6 (ENSPSNG00000001671) #15	CALML4 (ENSPSNG00000001723) #16	PIAS1 (ENSPSNG00000001758) #17	ENSPSNG00000001804	SKOR1 (ENSPSNG00000001839) #18	MAP2K5 (ENSPSNG00000001943) #19	C15orf61 (ENSPSNG00000002043) #20	IQCH (ENSPSNG00000002126) #21	AAGAB (ENSPSNG00000002239) #22	SMAD3 (ENSPSNG00000002263) #23	ENSPSNG00000002286	SMAD6 (ENSPSNG00000002293) #24	ENSPSNG00000002306	LCTL (ENSPSNG00000002318) #26	ZWILCH (ENSPSNG00000002336) #27	ENSPSNG00000002352 ##28	SNAPC5 (ENSPSNG00000002388) #29	MAP2K1 (ENSPSNG00000002407) #31	TIPIN (ENSPSNG00000002436) #32	ENSPSNG00000002464 #33	MEGF11 (ENSPSNG00000002539) #34	RAB11A (ENSPSNG00000002694) #35	ENSPSNG00000002715	DENND4A (ENSPSNG00000002770) #37
Dolphin	MODERN SPECIES	1671												SKOR1 (ENSTTRG00000003036) #18	MAP2K5 (ENSTTRG00000003035) #19	C15orf61 (ENSTTRG00000003034) #20	IQCH (ENSTTRG00000003033) #21	AAGAB (ENSTTRG00000003032) #22	SMAD3 (ENSTTRG00000003030) #23
Sperm whale	MODERN SPECIES	2	KIF23 (ENSPCTG00005020503) #8	PAQR5 (ENSPCTG00005020467) #7	GLCE (ENSPCTG00005020426)	SPESP1 (ENSPCTG00005020391) #10	ITGA11 (ENSPCTG00005020249) #13	FEM1B (ENSPCTG00005020203) #14	CLN6 (ENSPCTG00005020048) #15	CALML4 (ENSPCTG00005019999) #16	PIAS1 (ENSPCTG00005019931) #17	ENSPCTG00005019890	ENSPCTG00005019847	SKOR1 (ENSPCTG00005019628) #18	MAP2K5 (ENSPCTG00005018992) #19	C11H15orf61 (ENSPCTG00005018901) #20	IQCH (ENSPCTG00005018285) #21	AAGAB (ENSPCTG00005018169) #22	SMAD3 (ENSPCTG00005018084) #23	ENSPCTG00005018068	SMAD6 (ENSPCTG00005018032) #24	ENSPCTG00005018004 #25	LCTL (ENSPCTG00005017782) #26	ZWILCH (ENSPCTG00005017727) #27	ENSPCTG00005017611 ##28	SNAPC5 (ENSPCTG00005017569) #29	MAP2K1 (ENSPCTG00005017538) #31	TIPIN (ENSPCTG00005017493) #32	DIS3L (ENSPCTG00005017408) #33	MEGF11 (ENSPCTG00005016590) #34	RAB11A (ENSPCTG00005016434) #35	DENND4A (ENSPCTG00005016168) #37	SLC24A1 (ENSPCTG00005015689)
Blue whale	MODERN SPECIES	11	GLCE (ENSBMSG00010003338)	ENSBMSG00010003347	SPESP1 (ENSBMSG00010003359) #10	ENSBMSG00010003371 #11	CORO2B (ENSBMSG00010003388) #12	ENSBMSG00010003412	ITGA11 (ENSBMSG00010003422) #13	FEM1B (ENSBMSG00010003441) #14	CLN6 (ENSBMSG00010003453) #15	CALML4 (ENSBMSG00010003507) #16	PIAS1 (ENSBMSG00010003520) #17	SKOR1 (ENSBMSG00010003555) #18	MAP2K5 (ENSBMSG00010003598) #19	C15orf61 (ENSBMSG00010003681) #20	IQCH (ENSBMSG00010003720) #21	AAGAB (ENSBMSG00010003912) #22	SMAD3 (ENSBMSG00010003929) #23	SMAD6 (ENSBMSG00010003960) #24	LCTL (ENSBMSG00010003979) #26	ZWILCH (ENSBMSG00010004025) #27	ENSBMSG00010004041 ##28	ENSBMSG00010004081 #29	MAP2K1 (ENSBMSG00010004109) #31	ENSBMSG00010004137	ENSBMSG00010004151 #32	DIS3L (ENSBMSG00010004171) #33	MEGF11 (ENSBMSG00010004218) #34	RAB11A (ENSBMSG00010004363) #35	DENND4A (ENSBMSG00010004402) #37	SLC24A1 (ENSBMSG00010004497)	INTS14 (ENSBMSG00010004651)
Camelidae	ANCESTRAL SPECIES	83										ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00910000147890 #25	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Arabian camel	MODERN SPECIES	32	TPM1 (ENSCDRG00005006508)	ENSCDRG00005006370	ENSCDRG00005004006	CA12 (ENSCDRG00005003913)	APH1B (ENSCDRG00005003835)	RAB8B (ENSCDRG00005003808)	ENSCDRG00005003749	ENSCDRG00005003720	CLN6 (ENSCDRG00005003662) #15	CALML4 (ENSCDRG00005003629) #16	ENSCDRG00005003580	PIAS1 (ENSCDRG00005003494) #17	MAP2K5 (ENSCDRG00005003152) #19	C15orf61 (ENSCDRG00005003109) #20	IQCH (ENSCDRG00005002929) #21	AAGAB (ENSCDRG00005002843) #22	SMAD3 (ENSCDRG00005002780) #23	ENSCDRG00005002755 #24	ENSCDRG00005002745 #25	LCTL (ENSCDRG00005002712) #26	ZWILCH (ENSCDRG00005002673) #27	ENSCDRG00005002627 #28	SNAPC5 (ENSCDRG00005002604) #29	MAP2K1 (ENSCDRG00005002580) #31	TIPIN (ENSCDRG00005002562) #32	DIS3L (ENSCDRG00005002526) #33	MEGF11 (ENSCDRG00005002479) #34	RAB11A (ENSCDRG00005002443) #35	DENND4A (ENSCDRG00005002286) #37	SLC24A1 (ENSCDRG00005002129)	INTS14 (ENSCDRG00005001994)
Alpaca	MODERN SPECIES	3324													MAP2K5 (ENSVPAG00000008890) #19	C15orf61 (ENSVPAG00000008887) #20	IQCH (ENSVPAG00000008883) #21	AAGAB (ENSVPAG00000008879) #22
Suina	ANCESTRAL SPECIES	12	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Chacoan peccary	MODERN SPECIES	786	KIF23 (ENSCWAG00000012586) #8	PAQR5 (ENSCWAG00000012711) #7	GLCE (ENSCWAG00000012796)	SPESP1 (ENSCWAG00000012853) #10	ENSCWAG00000012876 #11	CORO2B (ENSCWAG00000012937) #12	ITGA11 (ENSCWAG00000013057) #13	FEM1B (ENSCWAG00000013140) #14	CLN6 (ENSCWAG00000013181) #15	CALML4 (ENSCWAG00000013422) #16	PIAS1 (ENSCWAG00000013465) #17	SKOR1 (ENSCWAG00000013676) #18	MAP2K5 (ENSCWAG00000013886) #19	C15orf61 (ENSCWAG00000014382) #20	IQCH (ENSCWAG00000014432) #21	AAGAB (ENSCWAG00000014993) #22	SMAD3 (ENSCWAG00000015026) #23	SMAD6 (ENSCWAG00000015079) #24	LCTL (ENSCWAG00000015109) #26	ZWILCH (ENSCWAG00000015266) #27	RPL4 (ENSCWAG00000015376) #28	SNAPC5 (ENSCWAG00000015485) #29	MAP2K1 (ENSCWAG00000015519) #31	TIPIN (ENSCWAG00000015560) #32	DIS3L (ENSCWAG00000015597) #33	MEGF11 (ENSCWAG00000015726) #34	RAB11A (ENSCWAG00000016259) #35	DENND4A (ENSCWAG00000016363) #37	SLC24A1 (ENSCWAG00000017106)	INTS14 (ENSCWAG00000017595)	HACD3 (ENSCWAG00000017975)
Pig	MODERN SPECIES		GLCE (ENSSSCG00000026078)	NOX5 (ENSSSCG00000004966) #9	SPESP1 (ENSSSCG00000032244) #10	ENSSSCG00000004963 #11	CORO2B (ENSSSCG00000004962) #12	ITGA11 (ENSSSCG00000004961) #13	FEM1B (ENSSSCG00000022419) #14	CLN6 (ENSSSCG00000004957) #15	CALML4 (ENSSSCG00000026517) #16	PIAS1 (ENSSSCG00000004958) #17	SKOR1 (ENSSSCG00000004956) #18	MAP2K5 (ENSSSCG00000004955) #19	C15orf61 (ENSSSCG00000004954) #20	ENSSSCG00000034963 #21	ENSSSCG00000057448 #21	AAGAB (ENSSSCG00000004951) #22	SMAD3 (ENSSSCG00000004952) #23	SMAD6 (ENSSSCG00000004948) #24	LCTL (ENSSSCG00000004947) #26	ENSSSCG00000051767	ZWILCH (ENSSSCG00000004946) #27	RPL4 (ENSSSCG00000004945) #28	SNAPC5 (ENSSSCG00000038941) #29	MAP2K1 (ENSSSCG00000004943) #31	TIPIN (ENSSSCG00000004942) #32	DIS3L (ENSSSCG00000004941) #33	MEGF11 (ENSSSCG00000004939) #34	RAB11A (ENSSSCG00000032312) #35	DENND4A (ENSSSCG00000004938) #37	SLC24A1 (ENSSSCG00000004937)	INTS14 (ENSSSCG00000004936)
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #24	ENSGT00910000147041	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b
Carnivora	ANCESTRAL SPECIES		ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Felidae	ANCESTRAL SPECIES	1	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Panthera	ANCESTRAL SPECIES	3	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Tiger	MODERN SPECIES	204	KIF23 (ENSPTIG00000009094) #8	PAQR5 (ENSPTIG00000008616) #7	GLCE (ENSPTIG00000008506)	NOX5 (ENSPTIG00000006417) #9	ENSPTIG00000006135 #11	CORO2B (ENSPTIG00000001549) #12	ITGA11 (ENSPTIG00000020061) #13	FEM1B (ENSPTIG00000019928) #14	CLN6 (ENSPTIG00000019082) #15	CALML4 (ENSPTIG00000018784) #16	PIAS1 (ENSPTIG00000017759) #17	ENSPTIG00000017654	MAP2K5 (ENSPTIG00000016073) #19	ENSPTIG00000015816	IQCH (ENSPTIG00000014096) #21	AAGAB (ENSPTIG00000013747) #22	SMAD3 (ENSPTIG00000012606) #23	LCTL (ENSPTIG00000012036) #26	ZWILCH (ENSPTIG00000011456) #27	ENSPTIG00000010784 #28	SNAPC5 (ENSPTIG00000010493) #29	MAP2K1 (ENSPTIG00000010070) #31	ENSPTIG00000009826	DIS3L (ENSPTIG00000009042) #33	MEGF11 (ENSPTIG00000001273) #34	RAB11A (ENSPTIG00000021637) #35	DENND4A (ENSPTIG00000018874) #37	SLC24A1 (ENSPTIG00000017335)	INTS14 (ENSPTIG00000014987)	HACD3 (ENSPTIG00000012698)	ENSPTIG00000012013
Panthera_a	ANCESTRAL SPECIES	15	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
leopard	MODERN SPECIES	7	PAQR5 (ENSPPRG00000022419) #7	GLCE (ENSPPRG00000021675)	NOX5 (ENSPPRG00000020694) #9	ENSPPRG00000015452 #11	CORO2B (ENSPPRG00000015002) #12	ITGA11 (ENSPPRG00000014106) #13	FEM1B (ENSPPRG00000011995) #14	CLN6 (ENSPPRG00000011593) #15	CALML4 (ENSPPRG00000009014) #16	PIAS1 (ENSPPRG00000008695) #17	SKOR1 (ENSPPRG00000007828) #18	MAP2K5 (ENSPPRG00000006923) #19	ENSPPRG00000005987	C15orf61 (ENSPPRG00000005929) #20	IQCH (ENSPPRG00000005647) #21	AAGAB (ENSPPRG00000003564) #22	SMAD3 (ENSPPRG00000003306) #23	SMAD6 (ENSPPRG00000002502) #24	LCTL (ENSPPRG00000002315) #26	ZWILCH (ENSPPRG00000001390) #27	ENSPPRG00000000610 #28	SNAPC5 (ENSPPRG00000000465) #29	MAP2K1 (ENSPPRG00000022608) #31	TIPIN (ENSPPRG00000022554) #32	DIS3L (ENSPPRG00000019912) #33	MEGF11 (ENSPPRG00000014069) #34	RAB11A (ENSPPRG00000010471) #35	DENND4A (ENSPPRG00000009637) #37	SLC24A1 (ENSPPRG00000006682)	INTS14 (ENSPPRG00000003935)	HACD3 (ENSPPRG00000003107)
lion	MODERN SPECIES	6	PAQR5 (ENSPLOG00000004659) #7	GLCE (ENSPLOG00000004669)	NOX5 (ENSPLOG00000004683) #9	SPESP1 (ENSPLOG00000004706) #10	ENSPLOG00000004724 #11	CORO2B (ENSPLOG00000004744) #12	ITGA11 (ENSPLOG00000004793) #13	FEM1B (ENSPLOG00000004841) #14	CLN6 (ENSPLOG00000004871) #15	CALML4 (ENSPLOG00000004955) #16	PIAS1 (ENSPLOG00000004975) #17	SKOR1 (ENSPLOG00000005020) #18	MAP2K5 (ENSPLOG00000006228) #19	C15orf61 (ENSPLOG00000006817) #20	IQCH (ENSPLOG00000006897) #21	AAGAB (ENSPLOG00000007046) #22	SMAD3 (ENSPLOG00000007068) #23	ENSPLOG00000007093	SMAD6 (ENSPLOG00000007495) #24	LCTL (ENSPLOG00000007528) #26	ZWILCH (ENSPLOG00000007600) #27	RPL4 (ENSPLOG00000007707) #28	SNAPC5 (ENSPLOG00000007792) #29	MAP2K1 (ENSPLOG00000007836) #31	TIPIN (ENSPLOG00000007894) #32	DIS3L (ENSPLOG00000007929) #33	MEGF11 (ENSPLOG00000008100) #34	RAB11A (ENSPLOG00000008488) #35	DENND4A (ENSPLOG00000008717) #37	SLC24A1 (ENSPLOG00000009464)	INTS14 (ENSPLOG00000009755)
Cat	MODERN SPECIES	237	GLCE (ENSFCAG00000010280)	NOX5 (ENSFCAG00000001372) #9	SPESP1 (ENSFCAG00000048668) #10	ENSFCAG00000034954 #11	CORO2B (ENSFCAG00000006500) #12	ITGA11 (ENSFCAG00000006499) #13	FEM1B (ENSFCAG00000045964) #14	ENSFCAG00000049632	CLN6 (ENSFCAG00000025647) #15	CALML4 (ENSFCAG00000006497) #16	PIAS1 (ENSFCAG00000018490) #17	SKOR1 (ENSFCAG00000043709) #18	MAP2K5 (ENSFCAG00000004420) #19	CB3H15orf61 (ENSFCAG00000040546) #20	IQCH (ENSFCAG00000004419) #21	AAGAB (ENSFCAG00000004418) #22	SMAD3 (ENSFCAG00000027081) #23	SMAD6 (ENSFCAG00000012300) #24	LCTL (ENSFCAG00000012298) #26	ZWILCH (ENSFCAG00000012294) #27	RPL4 (ENSFCAG00000012293) #28	SNAPC5 (ENSFCAG00000012291) #29	MAP2K1 (ENSFCAG00000028389) #31	TIPIN (ENSFCAG00000035191) #32	DIS3L (ENSFCAG00000029869) #33	MEGF11 (ENSFCAG00000003091) #34	RAB11A (ENSFCAG00000030174) #35	DENND4A (ENSFCAG00000008694) #37	SLC24A1 (ENSFCAG00000008693)	INTS14 (ENSFCAG00000008692)	HACD3 (ENSFCAG00000008691)
Caniformia	ANCESTRAL SPECIES	12	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Ursidae	ANCESTRAL SPECIES	21	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B.p #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Ursus	ANCESTRAL SPECIES	37	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B.p #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
American black bear	MODERN SPECIES	83														C15orf61 (ENSUAMG00000020551) #20	IQCH (ENSUAMG00000020552) #21	AAGAB (ENSUAMG00000020553) #22	SMAD3 (ENSUAMG00000020554) #23	SMAD6 (ENSUAMG00000020556) #24
Polar bear	MODERN SPECIES	320	GLCE (ENSUMAG00000011629)	NOX5 (ENSUMAG00000011648) #9	SPESP1 (ENSUMAG00000011718) #10	ENSUMAG00000011724	ENSUMAG00000011740 #11	CORO2B (ENSUMAG00000011755) #12	ITGA11 (ENSUMAG00000011792) #13	FEM1B (ENSUMAG00000011958) #14	ENSUMAG00000011962 #15	CALML4 (ENSUMAG00000011979) #16	PIAS1 (ENSUMAG00000011980) #17	ENSUMAG00000011983	MAP2K5 (ENSUMAG00000011992) #19	C15orf61 (ENSUMAG00000012016) #20	IQCH (ENSUMAG00000012020) #21	AAGAB (ENSUMAG00000012048) #22	ENSUMAG00000012057 #23	LCTL (ENSUMAG00000012072) #26	ZWILCH (ENSUMAG00000012145) #27	RPL4 (ENSUMAG00000012178) #28	MAP2K1 (ENSUMAG00000012208) #31	TIPIN (ENSUMAG00000012215) #32	DIS3L (ENSUMAG00000012227) #33	MEGF11 (ENSUMAG00000012242) #34	RAB11A (ENSUMAG00000012273) #35	DENND4A (ENSUMAG00000012290) #37	SLC24A1 (ENSUMAG00000012325)	INTS14 (ENSUMAG00000012368)	HACD3 (ENSUMAG00000012379)	DPP8 (ENSUMAG00000012441)	ENSUMAG00000012451
Giant Panda	MODERN SPECIES	15	GLCE (ENSAMEG00000030318)	ENSAMEG00000020008	NOX5 (ENSAMEG00000014136) #9	SPESP1 (ENSAMEG00000014134) #10	ENSAMEG00000014117 #11	CORO2B (ENSAMEG00000014093) #12	ITGA11 (ENSAMEG00000014076) #13	FEM1B (ENSAMEG00000014073) #14	CLN6 (ENSAMEG00000014058) #15	CALML4 (ENSAMEG00000014054) #16	PIAS1 (ENSAMEG00000014025) #17	SKOR1 (ENSAMEG00000004996) #18	MAP2K5 (ENSAMEG00000005013) #19	C15orf61 (ENSAMEG00000029099) #20	IQCH (ENSAMEG00000005044) #21	AAGAB (ENSAMEG00000028433) #22	SMAD3 (ENSAMEG00000003318) #23	SMAD6 (ENSAMEG00000029979) #24	LCTL (ENSAMEG00000003300) #26	ZWILCH (ENSAMEG00000003251) #27	ENSAMEG00000029170 #28	SNAPC5 (ENSAMEG00000003249) #29	MAP2K1 (ENSAMEG00000003218) #31	TIPIN (ENSAMEG00000027725) #32	DIS3L (ENSAMEG00000003166) #33	MEGF11 (ENSAMEG00000003131) #34	RAB11A (ENSAMEG00000003119) #35	DENND4A (ENSAMEG00000003046) #37	SLC24A1 (ENSAMEG00000003029)	INTS14 (ENSAMEG00000003002)	HACD3 (ENSAMEG00000002983)
Mustelinae	ANCESTRAL SPECIES	66	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Ferret	MODERN SPECIES	228	GLCE (ENSMPUG00000000209)	NOX5 (ENSMPUG00000000210) #9	SPESP1 (ENSMPUG00000000214) #10	ENSMPUG00000000216	ENSMPUG00000000218 #11	CORO2B (ENSMPUG00000000220) #12	ITGA11 (ENSMPUG00000000221) #13	FEM1B (ENSMPUG00000000266) #14	CLN6 (ENSMPUG00000000267) #15	CALML4 (ENSMPUG00000000270) #16	PIAS1 (ENSMPUG00000000281) #17	SKOR1 (ENSMPUG00000000283) #18	MAP2K5 (ENSMPUG00000000285) #19	C15orf61 (ENSMPUG00000000287) #20	IQCH (ENSMPUG00000000289) #21	AAGAB (ENSMPUG00000000292) #22	SMAD3 (ENSMPUG00000000304) #23	SMAD6 (ENSMPUG00000000307) #24	ENSMPUG00000000309	LCTL (ENSMPUG00000000312) #26	ZWILCH (ENSMPUG00000000333) #27	ENSMPUG00000000337 #28	SNAPC5 (ENSMPUG00000000356) #29	MAP2K1 (ENSMPUG00000000363) #31	TIPIN (ENSMPUG00000000365) #32	DIS3L (ENSMPUG00000000378) #33	MEGF11 (ENSMPUG00000000383) #34	RAB11A (ENSMPUG00000000387) #35	DENND4A (ENSMPUG00000000388) #37	SLC24A1 (ENSMPUG00000000468)	INTS14 (ENSMPUG00000000472)
American mink	MODERN SPECIES	46	GLCE (ENSNVIG00000015508)	NOX5 (ENSNVIG00000015522) #9	SPESP1 (ENSNVIG00000015552) #10	ENSNVIG00000015562	ENSNVIG00000015596 #11	CORO2B (ENSNVIG00000015623) #12	ENSNVIG00000015659	ITGA11 (ENSNVIG00000015665) #13	FEM1B (ENSNVIG00000015730) #14	CLN6 (ENSNVIG00000015741) #15	CALML4 (ENSNVIG00000015844) #16	PIAS1 (ENSNVIG00000015868) #17	SKOR1 (ENSNVIG00000015923) #18	MP2K5 (ENSNVIG00000015958) #19	IQCH (ENSNVIG00000016136) #21	AAGAB (ENSNVIG00000016212) #22	SMAD3 (ENSNVIG00000016249) #23	SMAD6 (ENSNVIG00000016271) #24	LCTL (ENSNVIG00000016282) #26	ZWILC (ENSNVIG00000016326) #27	RPL4 (ENSNVIG00000016412) #28	SNAPC5 (ENSNVIG00000016483) #29	MAP2K1 (ENSNVIG00000016498) #31	TIPIN (ENSNVIG00000016513) #32	DIS3L (ENSNVIG00000016535) #33	MEGF11 (ENSNVIG00000016583) #34	RAB11A (ENSNVIG00000016821) #35	DENND4A (ENSNVIG00000016862) #37	SLC24A1 (ENSNVIG00000017089)	CO044 (ENSNVIG00000017199)	HACD3 (ENSNVIG00000017259)
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES	15	ENSGT00940000163568	ENSGT00940000153533.a.m.b.b	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218.m #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00950000185603	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00940000163568	ENSGT00940000153533.a.m.b.b	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218.m #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00950000185603	ENSGT00390000013696 #27	ENSGT00390000018145.lc.a #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914 #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Dingo	MODERN SPECIES	205	ENSCAFG00020007559	NOX5 (ENSCAFG00020007565) #9	SPESP1 (ENSCAFG00020007667) #10	ENSCAFG00020007670 #11	ENSCAFG00020007674	CORO2B (ENSCAFG00020007691) #12	ITGA11 (ENSCAFG00020007730) #13	FEM1B (ENSCAFG00020008006) #14	CLN6 (ENSCAFG00020008011) #15	CALML4 (ENSCAFG00020008020) #16	PIAS1 (ENSCAFG00020008026) #17	SKOR1 (ENSCAFG00020008049) #18	MAP2K5 (ENSCAFG00020008071) #19	C15orf61 (ENSCAFG00020008094) #20	IQCH (ENSCAFG00020008118) #21	ENSCAFG00020008170 #22	SMAD3 (ENSCAFG00020008177) #23	SMAD6 (ENSCAFG00020008193) #24	LCTL (ENSCAFG00020008195) #26	ZWILCH (ENSCAFG00020008215) #27	ENSCAFG00020008355 #28	SNAPC5 (ENSCAFG00020008387) #29	MAP2K1 (ENSCAFG00020008392) #31	TIPIN (ENSCAFG00020008398) #32	DIS3L (ENSCAFG00020008413) #33	MEGF11 (ENSCAFG00020008443) #34	RAB11A (ENSCAFG00020008478) #35	DENND4A (ENSCAFG00020008501) #37	SLC24A1 (ENSCAFG00020008562)	INTS14 (ENSCAFG00020008669)	HACD3 (ENSCAFG00020008678)
Dog	MODERN SPECIES	23	GLCE (ENSCAFG00845020635)	ENSCAFG00845020567	NOX5 (ENSCAFG00845020023) #9	SPESP1 (ENSCAFG00845019873) #10	ANP32A (ENSCAFG00845019800) #11	CORO2B (ENSCAFG00845019590) #12	ITGA11 (ENSCAFG00845019410) #13	FEM1B (ENSCAFG00845019340) #14	CLN6 (ENSCAFG00845018935) #15	CALML4 (ENSCAFG00845018790) #16	PIAS1 (ENSCAFG00845018319) #17	SKOR1 (ENSCAFG00845017976) #18	MAP2K5 (ENSCAFG00845017514) #19	C15orf61 (ENSCAFG00845017380) #20	IQCH (ENSCAFG00845017088) #21	AAGAB (ENSCAFG00845016886) #22	SMAD3 (ENSCAFG00845016639) #23	SMAD6 (ENSCAFG00845016415) #24	LCTL (ENSCAFG00845016168) #26	ENSCAFG00845016122	ZWILCH (ENSCAFG00845015845) #27	RPL4 (ENSCAFG00845015609) #28	SNAPC5 (ENSCAFG00845015512) #29	MAP2K1 (ENSCAFG00845015371) #31	ENSCAFG00845015268	TIPIN (ENSCAFG00845015229) #32	DIS3L (ENSCAFG00845015076) #33	ENSCAFG00845014976 #34	RAB11A (ENSCAFG00845027320) #35	DENND4A (ENSCAFG00845026536) #37	SLC24A1 (ENSCAFG00845026323)
Red fox	MODERN SPECIES		GLCE (ENSVVUG00000014760)	ENSVVUG00000014756	NOX5 (ENSVVUG00000014734) #9	SPESP1 (ENSVVUG00000014730) #10	ANP32A (ENSVVUG00000014726) #11	CORO2B (ENSVVUG00000014724) #12	ITGA11 (ENSVVUG00000014719) #13	FEM1B (ENSVVUG00000014718) #14	CLN6 (ENSVVUG00000014717) #15	ENSVVUG00000014716 #16	PIAS1 (ENSVVUG00000014713) #17	ENSVVUG00000014708 #18	MAP2K5 (ENSVVUG00000014703) #19	C15orf61 (ENSVVUG00000014693) #20	IQCH (ENSVVUG00000014665) #21	AAGAB (ENSVVUG00000014658) #22	SMAD3 (ENSVVUG00000014647) #23	SMAD6 (ENSVVUG00000014625) #24	ENSVVUG00000014615	ENSVVUG00000014612	LCTL (ENSVVUG00000014585) #26	ENSVVUG00000014578	ZWILCH (ENSVVUG00000014559) #27	ENSVVUG00000014531 #28	SNAPC5 (ENSVVUG00000014527) #29	MAP2K1 (ENSVVUG00000014514) #31	TIPIN (ENSVVUG00000014501) #32	DIS3L (ENSVVUG00000014492) #33	MEGF11 (ENSVVUG00000014448) #34	RAB11A (ENSVVUG00000014435) #35	DENND4A (ENSVVUG00000014392) #37
Canidae	ANCESTRAL SPECIES																	ENSGT00390000007218.n #22
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00390000007218.n #22
Dingo	MODERN SPECIES	271	TUBB6 (ENSCAFG00020023964)	CIDEA (ENSCAFG00020023962)	ENSCAFG00020023958	IMPA2 (ENSCAFG00020023957)	MPPE1 (ENSCAFG00020023956)	GNAL (ENSCAFG00020023942)	ENSCAFG00020023932	PIEZO2 (ENSCAFG00020023811)	NAPG (ENSCAFG00020023797)	APCDD1 (ENSCAFG00020023796)	ENSCAFG00020023792	VAPA (ENSCAFG00020023791)	ENSCAFG00020023790	ENSCAFG00020023787	ENSCAFG00020023786	ENSCAFG00020023785 #22	PPP4R1 (ENSCAFG00020023782)	RALBP1 (ENSCAFG00020023780)	ENSCAFG00020023779	TWSG1 (ENSCAFG00020023775)	ENSCAFG00020023774	ENSCAFG00020023769	NDUFV2 (ENSCAFG00020023766)	MTCL1 (ENSCAFG00020023727)	RAB12 (ENSCAFG00020023721)	PTPRM (ENSCAFG00020022563)	LRRC30 (ENSCAFG00020022537)	ENSCAFG00020022536	ENSCAFG00020022535	ENSCAFG00020022531	ENSCAFG00020022530
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00910000147041	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914.db.a #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Equus	ANCESTRAL SPECIES	4	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914.eb #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Donkey	MODERN SPECIES	11	ENSEASG00005025046	NOX5 (ENSEASG00005006228) #9	SPESP1 (ENSEASG00005028304) #10	ENSEASG00005006243 #11	CORO2B (ENSEASG00005006245) #12	ITGA11 (ENSEASG00005006251) #13	FEM1B (ENSEASG00005006255) #14	CLN6 (ENSEASG00005034200) #15	CALML4 (ENSEASG00005033729) #16	PIAS1 (ENSEASG00005006262) #17	ENSEASG00005006267	SKOR1 (ENSEASG00005006277) #18	MAP2K5 (ENSEASG00005006290) #19	ENSEASG00005006297 #20	IQCH (ENSEASG00005006301) #21	AAGAB (ENSEASG00005006311) #22	SMAD3 (ENSEASG00005006315) #23	ENSEASG00005025450 #24	LCTL (ENSEASG00005006319) #26	ZWILCH (ENSEASG00005006339) #27	RPL4 (ENSEASG00005006373) #28	SNAPC5 (ENSEASG00005006384) #29	MAP2K1 (ENSEASG00005006387) #31	TIPIN (ENSEASG00005006396) #32	DIS3L (ENSEASG00005006407) #33	MEGF11 (ENSEASG00005006429) #34	RAB11A (ENSEASG00005006431) #35	DENND4A (ENSEASG00005006437) #37	SLC24A1 (ENSEASG00005006448)	INTS14 (ENSEASG00005006454)	HACD3 (ENSEASG00005006456)
Horse	MODERN SPECIES		GLCE (ENSECAG00000014998)	NOX5 (ENSECAG00000018409) #9	SPESP1 (ENSECAG00000002377) #10	ENSECAG00000002541 #11	CORO2B (ENSECAG00000014020) #12	ITGA11 (ENSECAG00000023104) #13	FEM1B (ENSECAG00000015587)	CLN6 (ENSECAG00000016991) #15	CALML4 (ENSECAG00000021844) #16	PIAS1 (ENSECAG00000007993) #17	ENSECAG00000005747	SKOR1 (ENSECAG00000036584) #18	MAP2K5 (ENSECAG00000022411) #19	ENSECAG00000029823	IQCH (ENSECAG00000007674) #21	AAGAB (ENSECAG00000013142) #22	ENSECAG00000047849 #21	SMAD3 (ENSECAG00000020259) #23	SMAD6 (ENSECAG00000013706) #24	LCTL (ENSECAG00000014254) #26	ZWILCH (ENSECAG00000018367) #27	RPL4 (ENSECAG00000023179) #28	MAP2K1 (ENSECAG00000010640) #31	TIPIN (ENSECAG00000004590) #32	DIS3L (ENSECAG00000007302) #33	MEGF11 (ENSECAG00000000706) #34	RAB11A (ENSECAG00000023865) #35	DENND4A (ENSECAG00000024306) #37	SLC24A1 (ENSECAG00000013327)	INTS14 (ENSECAG00000018884)	HACD3 (ENSECAG00000023082)
Chiroptera	ANCESTRAL SPECIES	17	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465.h #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00910000147041	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914.db.a #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Microchiroptera	ANCESTRAL SPECIES	20	ENSGT00940000158844 #7	ENSGT00390000006043	ENSGT00940000162591 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465.h #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00910000147041	ENSGT00940000157369 #26	ENSGT00390000013696 #27	ENSGT00390000018145 #28	ENSGT00390000010331 #29	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #32	ENSGT00530000063106.B #33	ENSGT00940000155333.B #34	ENSGT00940000154914.db.a #35	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Greater horseshoe bat	MODERN SPECIES	24	PAQR5 (ENSRFEG00010003129) #7	GLCE (ENSRFEG00010003151)	ENSRFEG00010003165	SPESP1 (ENSRFEG00010003175) #10	ENSRFEG00010003201 #11	CORO2B (ENSRFEG00010003225) #12	ITGA11 (ENSRFEG00010003262) #13	FEM1B (ENSRFEG00010003282) #14	CLN6 (ENSRFEG00010003356) #15	ENSRFEG00010003398 #16	ENSRFEG00010003431 #17	ENSRFEG00010003474	SKOR1 (ENSRFEG00010003500) #18	MAP2K5 (ENSRFEG00010003624) #19	IQCH (ENSRFEG00010003782) #21	AAGAB (ENSRFEG00010003850) #22	SMAD3 (ENSRFEG00010003872) #23	SMAD6 (ENSRFEG00010003887) #24	ENSRFEG00010003900	LCTL (ENSRFEG00010003917) #26	ZWILCH (ENSRFEG00010003952) #27	ENSRFEG00010003980 #28	SNAPC5 (ENSRFEG00010003999) #29	MAP2K1 (ENSRFEG00010004010) #31	TIPIN (ENSRFEG00010004026) #32	DIS3L (ENSRFEG00010004058) #33	MEGF11 (ENSRFEG00010004126) #34	ENSRFEG00010004168 #35	DENND4A (ENSRFEG00010004242) #37	SLC24A1 (ENSRFEG00010004368)	INTS14 (ENSRFEG00010004454)
Microbat	MODERN SPECIES	1275								ITGA11 (ENSMLUG00000008993) #13	FEM1B (ENSMLUG00000008987) #14	CLN6 (ENSMLUG00000008964) #15	CALML4 (ENSMLUG00000010350) #16	PIAS1 (ENSMLUG00000010321) #17	MAP2K5 (ENSMLUG00000002205) #19	C15orf61 (ENSMLUG00000029534) #20	IQCH (ENSMLUG00000002192) #21	AAGAB (ENSMLUG00000002191) #22	SMAD3 (ENSMLUG00000002185) #23
Megabat	MODERN SPECIES	3284															IQCH (ENSPVAG00000002628) #21	AAGAB (ENSPVAG00000002627) #22	SMAD3 (ENSPVAG00000002626) #23
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000007218 #22
Common shrew	MODERN SPECIES	355																ENSSARG00000002117 #22