Euteleostomi	ANCESTRAL SPECIES	6	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000164138	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00940000160717
Sarcopterygii	ANCESTRAL SPECIES	9	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000164138	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00940000160717
Tetrapoda	ANCESTRAL SPECIES	11	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000164138	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00940000160717
Amniota	ANCESTRAL SPECIES	15	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Mammalia	ANCESTRAL SPECIES	28	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Theria	ANCESTRAL SPECIES	22	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Eutheria	ANCESTRAL SPECIES	8	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37
Primates	ANCESTRAL SPECIES	2	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37
Haplorrhini	ANCESTRAL SPECIES	17	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #28	ENSGT00910000147890	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37
Catarrhini	ANCESTRAL SPECIES	20	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #28	ENSGT00910000147890	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.i.a #32	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37
Cercopithecidae	ANCESTRAL SPECIES	21	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #28	ENSGT00910000147890	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.i.a #32	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00910000147053 #7	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b #25	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.i.a #32	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00390000006043	ENSGT00910000147053 #7	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b #25	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.i.a #32	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b
Cercopithecinae_b	ANCESTRAL SPECIES	31	ENSGT00390000006043	ENSGT00910000147053 #7	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b #25	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.i.a #32	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b
Cercopithecinae_d	ANCESTRAL SPECIES	37	ENSGT00390000006043	ENSGT00910000147053 #7	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b #25	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.i.a #32	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b
Sooty mangabey	MODERN SPECIES	336	ENSCATG00000031394 #7	NOX5 (ENSCATG00000036564) #8	SPESP1 (ENSCATG00000044425) #9	ANP32A (ENSCATG00000031468) #10	ENSCATG00000024063 #11	CORO2B (ENSCATG00000040950) #12	ITGA11 (ENSCATG00000030599) #13	FEM1B (ENSCATG00000044684) #14	CLN6 (ENSCATG00000003907) #15	CALML4 (ENSCATG00000040034) #16	PIAS1 (ENSCATG00000010291) #17	SKOR1 (ENSCATG00000011653) #18	MAP2K5 (ENSCATG00000040709) #19	C15orf61 (ENSCATG00000012736) #20	IQCH (ENSCATG00000042766) #21	AAGAB (ENSCATG00000043588) #22	SMAD3 (ENSCATG00000009733) #23	ENSCATG00000000879 #24	ENSCATG00000035445 #25	SMAD6 (ENSCATG00000002013) #26	ENSCATG00000019079 #27	LCTL (ENSCATG00000033622) #28	ZWILCH (ENSCATG00000036836) #29	ENSCATG00000031544 #30	SNAPC5 (ENSCATG00000029571) #31	MAP2K1 (ENSCATG00000038127) #32	TIPIN (ENSCATG00000040328) #33	DIS3L (ENSCATG00000044661) #34	MEGF11 (ENSCATG00000032543) #35	RAB11A (ENSCATG00000034739) #36	DENND4A (ENSCATG00000030001) #37
Drill	MODERN SPECIES	253	GLCE (ENSMLEG00000000746)	ENSMLEG00000026060 #7	NOX5 (ENSMLEG00000025119) #8	SPESP1 (ENSMLEG00000035603) #9	ANP32A (ENSMLEG00000028255) #10	CORO2B (ENSMLEG00000034024) #12	ITGA11 (ENSMLEG00000034075) #13	FEM1B (ENSMLEG00000031589) #14	CLN6 (ENSMLEG00000031755) #15	CALML4 (ENSMLEG00000034518) #16	PIAS1 (ENSMLEG00000042488) #17	SKOR1 (ENSMLEG00000033424) #18	MAP2K5 (ENSMLEG00000032952) #19	C15orf61 (ENSMLEG00000044432) #20	IQCH (ENSMLEG00000008461) #21	AAGAB (ENSMLEG00000042581) #22	SMAD3 (ENSMLEG00000032633) #23	ENSMLEG00000039372	ENSMLEG00000033311	ENSMLEG00000039010 #25	ENSMLEG00000036582 #27	LCTL (ENSMLEG00000011538) #28	ZWILCH (ENSMLEG00000031789) #29	ENSMLEG00000043250 ##30	SNAPC5 (ENSMLEG00000044262) #31	MAP2K1 (ENSMLEG00000034124) #32	TIPIN (ENSMLEG00000031419) #33	DIS3L (ENSMLEG00000034558) #34	ENSMLEG00000039621	MEGF11 (ENSMLEG00000042443) #35	RAB11A (ENSMLEG00000032505) #36
Olive baboon	MODERN SPECIES	17	SPESP1 (ENSPANG00000016524) #9	ANP32A (ENSPANG00000016536) #10	ENSPANG00000048171	CORO2B (ENSPANG00000016540) #12	ITGA11 (ENSPANG00000016582) #13	FEM1B (ENSPANG00000016581) #14	ENSPANG00000037059	CLN6 (ENSPANG00000016585) #15	CALML4 (ENSPANG00000016584) #16	PIAS1 (ENSPANG00000016583) #17	ENSPANG00000043681	SKOR1 (ENSPANG00000016593) #18	MAP2K5 (ENSPANG00000016592) #19	C15orf61 (ENSPANG00000016591) #20	IQCH (ENSPANG00000016625) #21	AAGAB (ENSPANG00000016628) #22	SMAD3 (ENSPANG00000016627) #23	ENSPANG00000016626 #25	SMAD6 (ENSPANG00000016648) #26	LCTL (ENSPANG00000016647) #28	ZWILCH (ENSPANG00000016646) #29	ENSPANG00000016666 ##30	SNAPC5 (ENSPANG00000016665) #31	MAP2K1 (ENSPANG00000016664) #32	TIPIN (ENSPANG00000016672) #33	DIS3L (ENSPANG00000016671) #34	ENSPANG00000046531	ENSPANG00000024144	MEGF11 (ENSPANG00000016670) #35	RAB11A (ENSPANG00000016687) #36	DENND4A (ENSPANG00000016685) #37
Macaca	ANCESTRAL SPECIES	1	ENSGT00910000147053 #7	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b #25	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.i.a #32	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b
Pig-tailed macaque	MODERN SPECIES	77	ENSMNEG00000024626 #7	NOX5 (ENSMNEG00000032218) #8	SPESP1 (ENSMNEG00000024286) #9	ENSMNEG00000038547	ANP32A (ENSMNEG00000043179) #10	CORO2B (ENSMNEG00000028626) #12	ITGA11 (ENSMNEG00000031314) #13	FEM1B (ENSMNEG00000033491) #14	CLN6 (ENSMNEG00000034743) #15	CALML4 (ENSMNEG00000033193) #16	PIAS1 (ENSMNEG00000030278) #17	SKOR1 (ENSMNEG00000032875) #18	MAP2K5 (ENSMNEG00000043681) #19	C15orf61 (ENSMNEG00000034192) #20	IQCH (ENSMNEG00000034386) #21	AAGAB (ENSMNEG00000040056) #22	SMAD3 (ENSMNEG00000033094) #23	ENSMNEG00000030486	ENSMNEG00000032567 #25	SMAD6 (ENSMNEG00000034598) #26	ENSMNEG00000031888 #27	LCTL (ENSMNEG00000002923) #28	ZWILCH (ENSMNEG00000034955) #29	ENSMNEG00000027886 ##30	SNAPC5 (ENSMNEG00000032504) #31	MAP2K1 (ENSMNEG00000027299) #32	TIPIN (ENSMNEG00000031947) #33	DIS3L (ENSMNEG00000035066) #34	MEGF11 (ENSMNEG00000028540) #35	RAB11A (ENSMNEG00000043040) #36	DENND4A (ENSMNEG00000031159) #37
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00390000006043	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.a.a.a	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b #25	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.i.a #32	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b
Crab-eating macaque	MODERN SPECIES	17	ENSMFAG00000063916	NOX5 (ENSMFAG00000000728) #8	SPESP1 (ENSMFAG00000043000) #9	ENSMFAG00000050608	ANP32A (ENSMFAG00000043083) #10	CORO2B (ENSMFAG00000030894) #12	ITGA11 (ENSMFAG00000001090) #13	FEM1B (ENSMFAG00000064469) #14	CALML4 (ENSMFAG00000036145) #16	CLN6 (ENSMFAG00000042975) #15	PIAS1 (ENSMFAG00000038832) #17	SKOR1 (ENSMFAG00000001347) #18	MAP2K5 (ENSMFAG00000030100) #19	C15orf61 (ENSMFAG00000053739) #20	IQCH (ENSMFAG00000001124) #21	AAGAB (ENSMFAG00000040550) #22	SMAD3 (ENSMFAG00000001781) #23	ENSMFAG00000062655 #25	ENSMFAG00000037066 #27	LCTL (ENSMFAG00000000458) #28	ZWILCH (ENSMFAG00000036529) #29	RPL4 (ENSMFAG00000036412) ##30	SNAPC5 (ENSMFAG00000046383) #31	ENSMFAG00000063036	MAP2K1 (ENSMFAG00000036522) ##32	TIPIN (ENSMFAG00000031924) #33	DIS3L (ENSMFAG00000035628) #34	MEGF11 (ENSMFAG00000038247) #35	RAB11A (ENSMFAG00000000699) #36	ENSMFAG00000055472	ENSMFAG00000060677
Rhesus	MODERN SPECIES	17	ENSMMUG00000063000	ENSMMUG00000063948	NOX5 (ENSMMUG00000006230) #8	SPESP1 (ENSMMUG00000063939) #9	ENSMMUG00000064021	ANP32A (ENSMMUG00000022717) #10	CORO2B (ENSMMUG00000006356) #12	ITGA11 (ENSMMUG00000004026) #13	FEM1B (ENSMMUG00000008311) #14	CLN6 (ENSMMUG00000011703) #15	PIAS1 (ENSMMUG00000011699) #17	SKOR1 (ENSMMUG00000014485) #18	MAP2K5 (ENSMMUG00000014482) #19	C7H15orf61 (ENSMMUG00000060549) #20	IQCH (ENSMMUG00000015458) #21	AAGAB (ENSMMUG00000041415) #22	ENSMMUG00000051534	SMAD3 (ENSMMUG00000015455) #23	ENSMMUG00000057696 #25	SMAD6 (ENSMMUG00000019018) #26	ENSMMUG00000063378	LCTL (ENSMMUG00000017447) #28	ZWILCH (ENSMMUG00000029588) #29	RPL4 (ENSMMUG00000016844) ##30	SNAPC5 (ENSMMUG00000060148) #31	MAP2K1 (ENSMMUG00000016840) #32	TIPIN (ENSMMUG00000003695) #33	DIS3L (ENSMMUG00000003693) #34	MEGF11 (ENSMMUG00000008007) #35	RAB11A (ENSMMUG00000008006) #36	DENND4A (ENSMMUG00000022056) #37
Vervet Monkey	MODERN SPECIES	18	PAQR5 (ENSCSAG00000013592)	GLCE (ENSCSAG00000013585)	NOX5 (ENSCSAG00000013567) #8	SPESP1 (ENSCSAG00000013535) #9	ANP32A (ENSCSAG00000013528) #10	CORO2B (ENSCSAG00000013518) #12	ITGA11 (ENSCSAG00000013505) #13	ENSCSAG00000013485	CLN6 (ENSCSAG00000013477) #15	CALML4 (ENSCSAG00000013468) #16	PIAS1 (ENSCSAG00000013455) #17	SKOR1 (ENSCSAG00000013424) #18	MAP2K5 (ENSCSAG00000013397) #19	C15orf61 (ENSCSAG00000013380) #20	IQCH (ENSCSAG00000013352) #21	AAGAB (ENSCSAG00000013281) #22	SMAD3 (ENSCSAG00000013275) #23	ENSCSAG00000019736	ENSCSAG00000013271 #25	SMAD6 (ENSCSAG00000013248) #26	LCTL (ENSCSAG00000013237) #28	ZWILCH (ENSCSAG00000013218) #29	ENSCSAG00000013205 #30	SNAPC5 (ENSCSAG00000013199) #31	MAP2K1 (ENSCSAG00000013191) #32	TIPIN (ENSCSAG00000013176) #33	DIS3L (ENSCSAG00000013140) #34	MEGF11 (ENSCSAG00000013112) #35	RAB11A (ENSCSAG00000013038) #36	DENND4A (ENSCSAG00000013032) #37	SLC24A1 (ENSCSAG00000013003)
Rhinopithecus	ANCESTRAL SPECIES	49	ENSGT00910000147053 #7	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #28	ENSGT00910000147890	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.i.a #32	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b
Golden snub-nosed monkey	MODERN SPECIES	1106	NOX5 (ENSRROG00000040374) #8	SPESP1 (ENSRROG00000031515) #9	ENSRROG00000028422	ANP32A (ENSRROG00000029508) #10	CORO2B (ENSRROG00000043899) #12	ITGA11 (ENSRROG00000032503) #13	FEM1B (ENSRROG00000030899) #14	CLN6 (ENSRROG00000033033) #15	CALML4 (ENSRROG00000045323) #16	PIAS1 (ENSRROG00000029180) #17	SKOR1 (ENSRROG00000040038) #18	ENSRROG00000000680	MAP2K5 (ENSRROG00000043911) #19	C15orf61 (ENSRROG00000026466) #20	IQCH (ENSRROG00000023549) #21	AAGAB (ENSRROG00000042217) #22	SMAD3 (ENSRROG00000024517) #23	ENSRROG00000003570 ##25	ENSRROG00000012076	ENSRROG00000043245 #26	ENSRROG00000009183 #27	ENSRROG00000034499	LCTL (ENSRROG00000040652) #28	ZWILCH (ENSRROG00000042656) #29	ENSRROG00000036201 ##30	SNAPC5 (ENSRROG00000042536) #31	MAP2K1 (ENSRROG00000034405) #32	TIPIN (ENSRROG00000004107) #33	DIS3L (ENSRROG00000038323) #34	MEGF11 (ENSRROG00000025747) #35	RAB11A (ENSRROG00000035305) #36
Black snub-nosed monkey	MODERN SPECIES	1519	GLCE (ENSRBIG00000039984)	ENSRBIG00000044757 #7	NOX5 (ENSRBIG00000038740) #8	SPESP1 (ENSRBIG00000038257) #9	ANP32A (ENSRBIG00000032599) #10	CORO2B (ENSRBIG00000035447) #12	ITGA11 (ENSRBIG00000032002) #13	FEM1B (ENSRBIG00000029847) #14	CLN6 (ENSRBIG00000028123) #15	CALML4 (ENSRBIG00000022837) #16	PIAS1 (ENSRBIG00000035465) #17	SKOR1 (ENSRBIG00000027225) #18	MAP2K5 (ENSRBIG00000042741) #19	C15orf61 (ENSRBIG00000041044) #20	IQCH (ENSRBIG00000037509) #21	AAGAB (ENSRBIG00000027896) #22	SMAD3 (ENSRBIG00000026650) #23	SMAD6 (ENSRBIG00000039005) #26	ENSRBIG00000044058 #27	LCTL (ENSRBIG00000034724) #28	ENSRBIG00000038789	ZWILCH (ENSRBIG00000043121) #29	ENSRBIG00000043139 ##30	SNAPC5 (ENSRBIG00000033556) #31	MAP2K1 (ENSRBIG00000031516) #32	TIPIN (ENSRBIG00000035207) #33	DIS3L (ENSRBIG00000029360) #34	MEGF11 (ENSRBIG00000032238) #35	RAB11A (ENSRBIG00000035649) #36	DENND4A (ENSRBIG00000043812) #37	SLC24A1 (ENSRBIG00000029938)
Hominoidea	ANCESTRAL SPECIES	20	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.b ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.i.a #32	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Hominidae	ANCESTRAL SPECIES	22	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.b ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.i.a #32	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	22	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00910000147041 #27	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.b.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.i.a #32	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	523	ARX (ENSGGOG00000023361)	ENSGGOG00000022441	POLA1 (ENSGGOG00000016072)	PCYT1B (ENSGGOG00000002402)	PDK3 (ENSGGOG00000006157)	SUPT20HL2 (ENSGGOG00000022110)	ZFX (ENSGGOG00000004053)	EIF2S3 (ENSGGOG00000024609)	KLHL15 (ENSGGOG00000028200)	CXorf58 (ENSGGOG00000016257)	APOO (ENSGGOG00000001200)	SAT1 (ENSGGOG00000027873)	ACOT9 (ENSGGOG00000015401)	PRDX4 (ENSGGOG00000026790)	PTCHD1 (ENSGGOG00000044059)	ENSGGOG00000036181 #22	ENSGGOG00000026912	CBLL2 (ENSGGOG00000034821)	ENSGGOG00000003961	ENSGGOG00000003123	MBTPS2 (ENSGGOG00000012064)	SMPX (ENSGGOG00000004353)	KLHL34 (ENSGGOG00000002780)	CNKSR2 (ENSGGOG00000013768)	RPS6KA3 (ENSGGOG00000008837)	ENSGGOG00000012186	MAP7D2 (ENSGGOG00000007760)	BCLAF3 (ENSGGOG00000009453)	SH3KBP1 (ENSGGOG00000008333)	MAP3K15 (ENSGGOG00000008317)	ENSGGOG00000013574
Gorilla	MODERN SPECIES	6	CIAPIN1 (ENSGGOG00000039236)	ANP32A (ENSGGOG00000015417) #10	CORO2B (ENSGGOG00000013046) #12	ITGA11 (ENSGGOG00000013093) #13	FEM1B (ENSGGOG00000028408) #14	CLN6 (ENSGGOG00000007840) #15	ENSGGOG00000007834 #16	ENSGGOG00000040187 #16	PIAS1 (ENSGGOG00000016852) #17	ENSGGOG00000004743 #18	ENSGGOG00000027762	ENSGGOG00000042211	MAP2K5 (ENSGGOG00000004734) #19	C15orf61 (ENSGGOG00000004732) #20	IQCH (ENSGGOG00000004722) #21	ENSGGOG00000004714 #22	ENSGGOG00000012045	ENSGGOG00000038329 #27	SMAD6 (ENSGGOG00000013002) #26	LCTL (ENSGGOG00000006350) #28	ZWILCH (ENSGGOG00000003703) #29	ENSGGOG00000003695 ##30	SNAPC5 (ENSGGOG00000003693) #31	ENSGGOG00000042752	MAP2K1 (ENSGGOG00000003687) #32	ENSGGOG00000024529	TIPIN (ENSGGOG00000000061) #33	DIS3L (ENSGGOG00000001549) #34	MEGF11 (ENSGGOG00000000293) #35	RAB11A (ENSGGOG00000014252) #36	ENSGGOG00000022841
Homo/Pan group	ANCESTRAL SPECIES	21	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00910000147041 #27	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.b.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.i.a #32	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b
Pan	ANCESTRAL SPECIES	20	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00910000147041 #27	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.b.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.i.a #32	ENSGT00510000046986.m.a	ENSGT00390000005764.g.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37
Chimpanzee	MODERN SPECIES	6	NOX5 (ENSPTRG00000007222) #8	SPESP1 (ENSPTRG00000007221) #9	ENSPTRG00000050341	ANP32A (ENSPTRG00000007219) #10	CORO2B (ENSPTRG00000007218) #12	ITGA11 (ENSPTRG00000007215) #13	FEM1B (ENSPTRG00000007214) #14	CLN6 (ENSPTRG00000007212) #15	CALML4 (ENSPTRG00000007211) #16	PIAS1 (ENSPTRG00000007210) #17	SKOR1 (ENSPTRG00000007209) #18	ENSPTRG00000048990	MAP2K5 (ENSPTRG00000007207) #19	C15H15orf61 (ENSPTRG00000030250) #20	IQCH (ENSPTRG00000007205) #21	AAGAB (ENSPTRG00000007202) #22	SMAD3 (ENSPTRG00000007199) #23	ENSPTRG00000047146	ENSPTRG00000044014 #27	SMAD6 (ENSPTRG00000007198) #26	LCTL (ENSPTRG00000007197) #28	ZWILCH (ENSPTRG00000007196) #29	RPL4 (ENSPTRG00000007195) ##30	SNAPC5 (ENSPTRG00000007194) #31	ENSPTRG00000049603	MAP2K1 (ENSPTRG00000007193) #32	ENSPTRG00000051889	TIPIN (ENSPTRG00000007192) #33	DIS3L (ENSPTRG00000007191) #34	MEGF11 (ENSPTRG00000007189) #35	RAB11A (ENSPTRG00000044358) #36
Bonobo	MODERN SPECIES	6	NOX5 (ENSPPAG00000038195) #8	SPESP1 (ENSPPAG00000040777) #9	ENSPPAG00000020890	ENSPPAG00000034193 #10	CORO2B (ENSPPAG00000030458) #12	ITGA11 (ENSPPAG00000030683) #13	FEM1B (ENSPPAG00000030523) #14	CLN6 (ENSPPAG00000030498) #15	ENSPPAG00000033363 #16	PIAS1 (ENSPPAG00000041443) #17	ENSPPAG00000036055 #18	ENSPPAG00000033373	MAP2K5 (ENSPPAG00000036945) #19	C15orf61 (ENSPPAG00000026999) #20	IQCH (ENSPPAG00000042974) #21	AAGAB (ENSPPAG00000041055) #22	SMAD3 (ENSPPAG00000033769) #23	ENSPPAG00000020485	ENSPPAG00000036915 #27	SMAD6 (ENSPPAG00000027722) #26	LCTL (ENSPPAG00000040836) #28	ZWILCH (ENSPPAG00000033861) #29	ENSPPAG00000035309 ##30	SNAPC5 (ENSPPAG00000041196) #31	ENSPPAG00000033063	MAP2K1 (ENSPPAG00000028577) #32	ENSPPAG00000038145	ENSPPAG00000041842	TIPIN (ENSPPAG00000033427) #33	DIS3L (ENSPPAG00000019888) #34	MEGF11 (ENSPPAG00000043580) #35
Human	MODERN SPECIES	6	NOX5 (ENSG00000255346) #8	NOX5 (ENSG00000290203)	SPESP1 (ENSG00000258484) #9	ANP32A (ENSG00000140350) #10	CORO2B (ENSG00000103647) #12	ITGA11 (ENSG00000137809) #13	FEM1B (ENSG00000169018) #14	CLN6 (ENSG00000128973) #15	CALML4 (ENSG00000129007) #16	ENSG00000260007	PIAS1 (ENSG00000033800) #17	SKOR1 (ENSG00000188779) #18	MAP2K5 (ENSG00000137764) #19	C15orf61 (ENSG00000189227) #20	IQCH (ENSG00000103599) #21	AAGAB (ENSG00000103591) #22	SMAD3 (ENSG00000166949) #23	SMAD6 (ENSG00000137834) #26	LCTL (ENSG00000188501) #28	ZWILCH (ENSG00000174442) #29	RPL4 (ENSG00000174444) ##30	SNAPC5 (ENSG00000174446) #31	MAP2K1 (ENSG00000169032) #32	TIPIN (ENSG00000075131) #33	DIS3L (ENSG00000166938) #34	MEGF11 (ENSG00000157890) #35	RAB11A (ENSG00000103769) #36	DENND4A (ENSG00000174485) #37	SLC24A1 (ENSG00000074621)	INTS14 (ENSG00000138614)	HACD3 (ENSG00000074696)
Orangutan	MODERN SPECIES	6	PAQR5 (ENSPPYG00000006599)	GLCE (ENSPPYG00000006598)	NOX5 (ENSPPYG00000006596) #8	SPESP1 (ENSPPYG00000029816) #9	ENSPPYG00000006595 #10	CORO2B (ENSPPYG00000006594) #12	ITGA11 (ENSPPYG00000006593) #13	FEM1B (ENSPPYG00000032577) #14	CLN6 (ENSPPYG00000006591) #15	ENSPPYG00000006590 #16	PIAS1 (ENSPPYG00000006589) #17	SKOR1 (ENSPPYG00000006588) #18	MAP2K5 (ENSPPYG00000006587) #19	C15orf61 (ENSPPYG00000006586) #20	IQCH (ENSPPYG00000006585) #21	AAGAB (ENSPPYG00000006584) #22	SMAD3 (ENSPPYG00000006583) #23	ENSPPYG00000006582	ENSPPYG00000006581 #26	LCTL (ENSPPYG00000006580) #28	ZWILCH (ENSPPYG00000006579) #29	RPL4 (ENSPPYG00000006578) ##30	SNAPC5 (ENSPPYG00000040277) #31	ENSPPYG00000032290	MAP2K1 (ENSPPYG00000006576) #32	TIPIN (ENSPPYG00000031745) #33	DIS3L (ENSPPYG00000006575) #34	MEGF11 (ENSPPYG00000039385) #35	RAB11A (ENSPPYG00000006573) #36	DENND4A (ENSPPYG00000006572) #37	SLC24A1 (ENSPPYG00000006571)
Gibbon	MODERN SPECIES	21	NOX5 (ENSNLEG00000013408) #8	SPESP1 (ENSNLEG00000013404) #9	ANP32A (ENSNLEG00000013347) #10	CORO2B (ENSNLEG00000013333) #12	ITGA11 (ENSNLEG00000013220) #13	FEM1B (ENSNLEG00000013213) #14	CLN6 (ENSNLEG00000013178) #15	ENSNLEG00000013164 #16	PIAS1 (ENSNLEG00000013103) #17	ENSNLEG00000031759	SKOR1 (ENSNLEG00000013091) #18	ENSNLEG00000032785	MAP2K5 (ENSNLEG00000013066) #19	C15orf61 (ENSNLEG00000013065) #20	IQCH (ENSNLEG00000013025) #21	AAGAB (ENSNLEG00000013006) #22	SMAD3 (ENSNLEG00000012983) #23	ENSNLEG00000028836	SMAD6 (ENSNLEG00000032864) #26	LCTL (ENSNLEG00000012956) #28	ZWILCH (ENSNLEG00000012950) #29	ENSNLEG00000012938 ##30	SNAPC5 (ENSNLEG00000033124) #31	MAP2K1 (ENSNLEG00000012913) #32	TIPIN (ENSNLEG00000012909) #33	DIS3L (ENSNLEG00000012891) #34	MEGF11 (ENSNLEG00000012863) #35	RAB11A (ENSNLEG00000012853) #36	DENND4A (ENSNLEG00000012772) #37	ENSNLEG00000012767	INTS14 (ENSNLEG00000012745)
Platyrrhini	ANCESTRAL SPECIES	27	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00390000011417.l.b	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00910000147890	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764.g.a.a #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Cebidae	ANCESTRAL SPECIES	29	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00910000147890	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00940000170330	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Marmoset	MODERN SPECIES	1	ENSCJAG00000002339 #10	ENSCJAG00000086993	CORO2B (ENSCJAG00000002319) #12	ITGA11 (ENSCJAG00000002269) #13	FEM1B (ENSCJAG00000002264) #14	ENSCJAG00000074396	ENSCJAG00000002250 #15	CALML4 (ENSCJAG00000002243) #16	PIAS1 (ENSCJAG00000002224) #17	SKOR1 (ENSCJAG00000002196) #18	MAP2K5 (ENSCJAG00000002156) #19	C15orf61 (ENSCJAG00000054412) #20	ENSCJAG00000073121	ENSCJAG00000051609	IQCH (ENSCJAG00000002130) #21	AAGAB (ENSCJAG00000002113) #22	SMAD3 (ENSCJAG00000002088) #23	SMAD6 (ENSCJAG00000044644) #26	LCTL (ENSCJAG00000007558) #28	ZWILCH (ENSCJAG00000007524) #29	ENSCJAG00000007491 ##30	SNAPC5 (ENSCJAG00000070895) #31	MAP2K1 (ENSCJAG00000007460) #32	ENSCJAG00000085355	DIS3L (ENSCJAG00000007411) #34	MEGF11 (ENSCJAG00000007353) #35	ENSCJAG00000083582	RAB11A (ENSCJAG00000042037) #36	DENND4A (ENSCJAG00000007209) #37	SLC24A1 (ENSCJAG00000007180)	INTS14 (ENSCJAG00000007118)
Cebidae_a	ANCESTRAL SPECIES	39	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT01020000230346.C.c.b.a.b.a.b	ENSGT00950000182907.a.b.b.b.tb ##10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00910000147890	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a.a.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Capuchin	MODERN SPECIES	248																AAGAB (ENSCCAG00000024283) #22	SMAD3 (ENSCCAG00000020767) #23	SMAD6 (ENSCCAG00000026913) #26	LCTL (ENSCCAG00000000633) #28	ZWILCH (ENSCCAG00000027333) #29	ENSCCAG00000022533 ##30	SNAPC5 (ENSCCAG00000020529) #31	MAP2K1 (ENSCCAG00000024279) #32	RHAG (ENSCCAG00000027136)	CRISP2 (ENSCCAG00000035454)	CRISP3 (ENSCCAG00000027207)	PGK2 (ENSCCAG00000004646)	CRISP1 (ENSCCAG00000024689)	DEFB114 (ENSCCAG00000027397)	DEFB113 (ENSCCAG00000014271)	DEFB110 (ENSCCAG00000030485)
Bolivian squirrel monkey	MODERN SPECIES	76	SPESP1 (ENSSBOG00000021264) #9	ENSSBOG00000025043	ENSSBOG00000020197	ANP32A (ENSSBOG00000030699) #10	CORO2B (ENSSBOG00000019665) #12	ITGA11 (ENSSBOG00000030635) #13	FEM1B (ENSSBOG00000030419) #14	CLN6 (ENSSBOG00000035779) #15	CALML4 (ENSSBOG00000031073) #16	PIAS1 (ENSSBOG00000030212) #17	ENSSBOG00000032111	SKOR1 (ENSSBOG00000031705) #18	MAP2K5 (ENSSBOG00000028179) #19	C15orf61 (ENSSBOG00000022188) #20	IQCH (ENSSBOG00000024935) #21	AAGAB (ENSSBOG00000035741) #22	SMAD3 (ENSSBOG00000020894) #23	ENSSBOG00000022363 #26	LCTL (ENSSBOG00000023227) #28	ENSSBOG00000031231	ZWILCH (ENSSBOG00000033149) #29	ENSSBOG00000015863 ##30	SNAPC5 (ENSSBOG00000028815) #31	MAP2K1 (ENSSBOG00000023083) #32
Mas night monkey	MODERN SPECIES	1197	ENSANAG00000026447 ##10	CORO2B (ENSANAG00000035767) #12	ITGA11 (ENSANAG00000024399) #13	FEM1B (ENSANAG00000036003) #14	CLN6 (ENSANAG00000031462) #15	ENSANAG00000022199	ENSANAG00000035306	CALML4 (ENSANAG00000036088) #16	PIAS1 (ENSANAG00000023771) #17	SKOR1 (ENSANAG00000026767) #18	MAP2K5 (ENSANAG00000026610) #19	ENSANAG00000033304	C15orf61 (ENSANAG00000019347) #20	IQCH (ENSANAG00000037205) #21	ENSANAG00000037777	AAGAB (ENSANAG00000038049) #22	ENSANAG00000031752	SMAD3 (ENSANAG00000001462) #23	SMAD6 (ENSANAG00000020717) #26	ENSANAG00000024963 #27	ENSANAG00000028396	UHRF2 (ENSANAG00000025453)	GLDC (ENSANAG00000034753)	KDM4C (ENSANAG00000024798)	ENSANAG00000033377	DMAC1 (ENSANAG00000029014)
Tarsier	MODERN SPECIES	1316													MAP2K5 (ENSTSYG00000013834) #19	CUNH15orf61 (ENSTSYG00000014554) #20	IQCH (ENSTSYG00000010472) #21	AAGAB (ENSTSYG00000010466) #22	SMAD3 (ENSTSYG00000025697) #23
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.cb.a ##30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Mouse lemur	MODERN SPECIES	22	DUOX2 (ENSMICG00000009164)	DUOXA2 (ENSMICG00000048012)	DUOXA1 (ENSMICG00000009195)	DUOX1 (ENSMICG00000009207)	SHF (ENSMICG00000033037)	SLC28A2 (ENSMICG00000009242)	ENSMICG00000032669	GATM (ENSMICG00000005565)	SPATA5L1 (ENSMICG00000035916)	C15orf48 (ENSMICG00000033332)	SLC30A4 (ENSMICG00000005588)	BLOC1S6 (ENSMICG00000005595)	ENSMICG00000005597	ENSMICG00000041604	IQCH (ENSMICG00000006127) #21	AAGAB (ENSMICG00000044554) #22	SMAD3 (ENSMICG00000006119) #23	SMAD6 (ENSMICG00000035205) #26	LCTL (ENSMICG00000004455) #28	ZWILCH (ENSMICG00000004429) #29	RPL4 (ENSMICG00000004419) ##30	SNAPC5 (ENSMICG00000004401) #31	MAP2K1 (ENSMICG00000004393) #32	TIPIN (ENSMICG00000004386) #33	DIS3L (ENSMICG00000004374) #34	MEGF11 (ENSMICG00000004354) #35	ENSMICG00000035335	RAB11A (ENSMICG00000041504) #36	DENND4A (ENSMICG00000004000) #37	ENSMICG00000044235	ENSMICG00000028970
Lemuriformes_a	ANCESTRAL SPECIES	197	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23
Coquerels sifaka	MODERN SPECIES	733												SKOR1 (ENSPCOG00000016399) #18	MAP2K5 (ENSPCOG00000020293) #19	C15orf61 (ENSPCOG00000018275) #20	IQCH (ENSPCOG00000021949) #21	AAGAB (ENSPCOG00000016985) #22	SMAD3 (ENSPCOG00000023000) #23
Greater bamboo lemur	MODERN SPECIES	313	PAQR5 (ENSPSMG00000002489)	GLCE (ENSPSMG00000002447)	SPESP1 (ENSPSMG00000002424) #9	ENSPSMG00000002406 #10	CORO2B (ENSPSMG00000002320) #12	ITGA11 (ENSPSMG00000002246) #13	FEM1B (ENSPSMG00000002150) #14	CLN6 (ENSPSMG00000002045) #15	CALML4 (ENSPSMG00000001943) #16	PIAS1 (ENSPSMG00000001932) #17	ENSPSMG00000001902	SKOR1 (ENSPSMG00000001884) #18	MAP2K5 (ENSPSMG00000001626) #19	C15orf61 (ENSPSMG00000001411) #20	IQCH (ENSPSMG00000001397) #21	AAGAB (ENSPSMG00000001327) #22	SMAD3 (ENSPSMG00000001058) #23	ENSPSMG00000000854	SMAD6 (ENSPSMG00000000845) #26
Bushbaby	MODERN SPECIES	126	KIF23 (ENSOGAG00000034448)	PAQR5 (ENSOGAG00000012036)	GLCE (ENSOGAG00000029673)	ENSOGAG00000003058 #10	CORO2B (ENSOGAG00000026008) #12	ITGA11 (ENSOGAG00000014144) #13	FEM1B (ENSOGAG00000014143) #14	CLN6 (ENSOGAG00000014142) #15	CALML4 (ENSOGAG00000014140) #16	PIAS1 (ENSOGAG00000014134) #17	SKOR1 (ENSOGAG00000025983) #18	MAP2K5 (ENSOGAG00000002480) #19	C15orf61 (ENSOGAG00000027440) #20	ENSOGAG00000028206	IQCH (ENSOGAG00000014224) #21	AAGAB (ENSOGAG00000014219) #22	SMAD3 (ENSOGAG00000014217) #23	ENSOGAG00000029245	ENSOGAG00000034467	SMAD6 (ENSOGAG00000015387) #26	LCTL (ENSOGAG00000015893) #28	ZWILCH (ENSOGAG00000015886) #29	ENSOGAG00000015884 #30	SNAPC5 (ENSOGAG00000015881) #31	MAP2K1 (ENSOGAG00000015876) #32	ENSOGAG00000028488 #33	DIS3L (ENSOGAG00000024086) #34	ENSOGAG00000034665	MEGF11 (ENSOGAG00000007644) #35	RAB11A (ENSOGAG00000007642) #36	DENND4A (ENSOGAG00000013678) #37
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Tree shrew	MODERN SPECIES	3464															IQCH (ENSTBEG00000005168) #21	AAGAB (ENSTBEG00000004459) #22	SMAD3 (ENSTBEG00000003884) #23
Glires	ANCESTRAL SPECIES	15	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Lagomorpha	ANCESTRAL SPECIES	7	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d.j	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00950000183167.a.b.a	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Rabbit	MODERN SPECIES	8	ENSOCUG00000009207	HEXA (ENSOCUG00000009190)	CELF6 (ENSOCUG00000021663)	PARP6 (ENSOCUG00000004374)	ENSOCUG00000006119	GRAMD2A (ENSOCUG00000006107)	SENP8 (ENSOCUG00000026054)	MYO9A (ENSOCUG00000017425)	ENSOCUG00000036279	ITGA11 (ENSOCUG00000017726) #13	FEM1B (ENSOCUG00000026586) #14	CLN6 (ENSOCUG00000017533) #15	PIAS1 (ENSOCUG00000000618) #17	MAP2K5 (ENSOCUG00000009024) #19	IQCH (ENSOCUG00000006647) #21	AAGAB (ENSOCUG00000006644) #22	ENSOCUG00000039204	SMAD3 (ENSOCUG00000029601) #23	ENSOCUG00000014186	ENSOCUG00000006134 #26	LCTL (ENSOCUG00000021771) #28	ZWILCH (ENSOCUG00000008800) #29	ENSOCUG00000008794 #30	SNAPC5 (ENSOCUG00000039231) #31	MAP2K1 (ENSOCUG00000008782) #32	ENSOCUG00000023060	TIPIN (ENSOCUG00000002212) #33	DIS3L (ENSOCUG00000002206) #34	MEGF11 (ENSOCUG00000014760) #35	RAB11A (ENSOCUG00000014755) #36	DENND4A (ENSOCUG00000007953) #37
Pika	MODERN SPECIES	1524																AAGAB (ENSOPRG00000015012) #22	SMAD3 (ENSOPRG00000014996) #23	SMAD6 (ENSOPRG00000014974) #26	IQCH (ENSOPRG00000014936) #21
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Kangaroo rat	MODERN SPECIES	330												Skor1 (ENSDORG00000005677) #18	Map2k5 (ENSDORG00000005673) #19	2300009A05Rik (ENSDORG00000028687) #20	Iqch (ENSDORG00000006468) #21	ENSDORG00000026611 #22	Smad3 (ENSDORG00000029949) #23	ENSDORG00000026894	Smad6 (ENSDORG00000028234) #26	Lctl (ENSDORG00000016291) #28	Zwilch (ENSDORG00000016288) #29	Rpl4 (ENSDORG00000016287) #30	Snapc5 (ENSDORG00000030051) #31	Map2k1 (ENSDORG00000001301) #32	Tipin (ENSDORG00000028988) #33	Dis3l (ENSDORG00000014909) #34	Megf11 (ENSDORG00000001008) #35	ENSDORG00000026125	ENSDORG00000028034 #36	Dennd4a (ENSDORG00000002146) #37	Slc24a1 (ENSDORG00000007185)
Myomorpha	ANCESTRAL SPECIES	25	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Muroidea	ANCESTRAL SPECIES	23	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.kb #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Golden Hamster	MODERN SPECIES	672	ENSMAUG00000008843	ENSMAUG00000007063	Kif23 (ENSMAUG00000009848)	Paqr5 (ENSMAUG00000009377)	Glce (ENSMAUG00000013447)	Spesp1 (ENSMAUG00000008837) #9	Anp32a (ENSMAUG00000000632) #10	Coro2b (ENSMAUG00000009618) #12	Itga11 (ENSMAUG00000002222) #13	Cln6 (ENSMAUG00000009546) #15	Calml4 (ENSMAUG00000015006) #16	Pias1 (ENSMAUG00000000785) #17	Skor1 (ENSMAUG00000020780) #18	Map2k5 (ENSMAUG00000015370) #19	Iqch (ENSMAUG00000004333) #21	Aagab (ENSMAUG00000005383) #22	Smad3 (ENSMAUG00000022258) #23	Smad6 (ENSMAUG00000009859) #26	Lctl (ENSMAUG00000009957) #28	Zwilch (ENSMAUG00000021210) #29	Rpl4 (ENSMAUG00000018867) #30	Snapc5 (ENSMAUG00000008645) #31	Map2k1 (ENSMAUG00000011379) #32	Tipin (ENSMAUG00000012421) #33	Dis3l (ENSMAUG00000008265) #34	Megf11 (ENSMAUG00000003129) #35	Rab11a (ENSMAUG00000018551) #36	Dennd4a (ENSMAUG00000018527) #37	Slc24a1 (ENSMAUG00000012813)	Ints14 (ENSMAUG00000020937)	Hacd3 (ENSMAUG00000004278)
Chinese hamster chok1gshd	MODERN SPECIES	284	Paqr5 (ENSCGRG00001021586)	Glce (ENSCGRG00001019156)	Spesp1 (ENSCGRG00001015906) #9	ENSCGRG00001022637 #10	Coro2b (ENSCGRG00001025051) #12	Itga11 (ENSCGRG00001016586) #13	Fem1b (ENSCGRG00001018487) #14	Cln6 (ENSCGRG00001016348) #15	Calml4 (ENSCGRG00001023410) #16	Pias1 (ENSCGRG00001018818) #17	Skor1 (ENSCGRG00001000300) #18	Map2k5 (ENSCGRG00001024707) #19	2300009A05Rik (ENSCGRG00001009275) #20	ENSCGRG00001000811	Iqch (ENSCGRG00001006084) #21	Aagab (ENSCGRG00001020082) #22	Smad3 (ENSCGRG00001013999) #23	Smad6 (ENSCGRG00001002733) #26	Lctl (ENSCGRG00001017716) #28	Zwilch (ENSCGRG00001018206) #29	Snapc5 (ENSCGRG00001013968) #31	Tipin (ENSCGRG00001018146) #33	Dis3l (ENSCGRG00001017825) #34	Megf11 (ENSCGRG00001019210) #35	Rab11a (ENSCGRG00001023313) #36	Dennd4a (ENSCGRG00001019979) #37	Slc24a1 (ENSCGRG00001023812)	Ints14 (ENSCGRG00001022061)	Hacd3 (ENSCGRG00001019214)	Dpp8 (ENSCGRG00001024771)	Igdcc4 (ENSCGRG00001004819)
Cricetidae_B	ANCESTRAL SPECIES	24	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Prairie vole	MODERN SPECIES	13	Glce (ENSMOCG00000019169)	Spesp1 (ENSMOCG00000016907) #9	ENSMOCG00000014776 #10	ENSMOCG00000004428 #10	Coro2b (ENSMOCG00000011097) #12	Itga11 (ENSMOCG00000003119) #13	Fem1b (ENSMOCG00000005442) #14	Cln6 (ENSMOCG00000021992) #15	Calml4 (ENSMOCG00000018493) #16	Pias1 (ENSMOCG00000022074) #17	ENSMOCG00000019235	Skor1 (ENSMOCG00000018261) #18	Map2k5 (ENSMOCG00000022058) #19	2300009A05Rik (ENSMOCG00000013991) #20	Iqch (ENSMOCG00000016873) #21	Aagab (ENSMOCG00000021340) #22	Smad3 (ENSMOCG00000018490) #23	Smad6 (ENSMOCG00000014458) #26	Lctl (ENSMOCG00000004744) #28	Zwilch (ENSMOCG00000017159) #29	ENSMOCG00000021901 #30	Snapc5 (ENSMOCG00000015348) #31	Map2k1 (ENSMOCG00000013072) #32	Tipin (ENSMOCG00000010343) #33	Dis3l (ENSMOCG00000005278) #34	Megf11 (ENSMOCG00000003573) #35	Rab11a (ENSMOCG00000021138) #36	Dennd4a (ENSMOCG00000008521) #37	Slc24a1 (ENSMOCG00000002968)	Ints14 (ENSMOCG00000020364)	Hacd3 (ENSMOCG00000004995)
Northern American deer mouse	MODERN SPECIES	20	Glce (ENSPEMG00000030703)	ENSPEMG00000017757 #9	Anp32a (ENSPEMG00000017392) #10	Coro2b (ENSPEMG00000016326) #12	Itga11 (ENSPEMG00000014149) #13	Fem1b (ENSPEMG00000028410) #14	ENSPEMG00000000682	Cln6 (ENSPEMG00000030484) #15	Calml4 (ENSPEMG00000012833) #16	Pias1 (ENSPEMG00000012119) #17	Skor1 (ENSPEMG00000010499) #18	Map2k5 (ENSPEMG00000010361) #19	2300009A05Rik (ENSPEMG00000009306) #20	Iqch (ENSPEMG00000005753) #21	ENSPEMG00000028831	Aagab (ENSPEMG00000018465) #22	Smad3 (ENSPEMG00000028676) #23	Smad6 (ENSPEMG00000017040) #26	Lctl (ENSPEMG00000016229) #28	Zwilch (ENSPEMG00000014485) #29	Rpl4 (ENSPEMG00000012064) #30	Snapc5 (ENSPEMG00000007852) #31	Map2k1 (ENSPEMG00000007282) #32	Tipin (ENSPEMG00000002370) #33	Dis3l (ENSPEMG00000001213) #34	Megf11 (ENSPEMG00000017797) #35	ENSPEMG00000021125 #36	Dennd4a (ENSPEMG00000022452) #37	Slc24a1 (ENSPEMG00000022814)	Ints14 (ENSPEMG00000008550)	Hacd3 (ENSPEMG00000008076)
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Mus	ANCESTRAL SPECIES	4	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859.e.b #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00940000154925.c.a	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Mouse	MODERN SPECIES	18	Kif23 (ENSMUSG00000032254)	Paqr5 (ENSMUSG00000032278)	Glce (ENSMUSG00000032252)	Spesp1 (ENSMUSG00000046846) #9	Anp32a (ENSMUSG00000032249) #10	Coro2b (ENSMUSG00000041729) #12	Itga11 (ENSMUSG00000032243) #13	Fem1b (ENSMUSG00000032244) #14	Cln6 (ENSMUSG00000032245) #15	Calml4 (ENSMUSG00000032246) #16	Pias1 (ENSMUSG00000032405) #17	Skor1 (ENSMUSG00000022245) #18	Map2k5 (ENSMUSG00000058444) #19	2300009A05Rik (ENSMUSG00000032403) #20	Iqch (ENSMUSG00000037801) #21	Aagab (ENSMUSG00000037257) #22	Smad3 (ENSMUSG00000032402) #23	Smad6 (ENSMUSG00000036867) #26	Lctl (ENSMUSG00000032401) #28	Zwilch (ENSMUSG00000032400) #29	Rpl4 (ENSMUSG00000032399) #30	Snapc5 (ENSMUSG00000032398) #31	Map2k1 (ENSMUSG00000004936) #32	Uchl4 (ENSMUSG00000035337)	Tipin (ENSMUSG00000032397) #33	Dis3l (ENSMUSG00000032396) #34	Megf11 (ENSMUSG00000036466) #35	Rab11a (ENSMUSG00000004771) #36	Dennd4a (ENSMUSG00000053641) #37	Slc24a1 (ENSMUSG00000034452)	Ints14 (ENSMUSG00000034263)
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859.e.b #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00940000154925.c.a	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
spretus	MODERN SPECIES	18	Paqr5 (MGP_SPRETEiJ_G0033458)	Glce (MGP_SPRETEiJ_G0033459)	Spesp1 (MGP_SPRETEiJ_G0033460) #9	Anp32a (MGP_SPRETEiJ_G0033461) #10	Coro2b (MGP_SPRETEiJ_G0033462) #12	Itga11 (MGP_SPRETEiJ_G0033463) #13	Fem1b (MGP_SPRETEiJ_G0033464) #14	Cln6 (MGP_SPRETEiJ_G0033465) #15	MGP_SPRETEiJ_G0033466	Calml4 (MGP_SPRETEiJ_G0033467) #16	Pias1 (MGP_SPRETEiJ_G0033468) #17	Skor1 (MGP_SPRETEiJ_G0033469) #18	Map2k5 (MGP_SPRETEiJ_G0033470) #19	2300009A05Rik (MGP_SPRETEiJ_G0033471) #20	Iqch (MGP_SPRETEiJ_G0033472) #21	Aagab (MGP_SPRETEiJ_G0033473) #22	Smad3 (MGP_SPRETEiJ_G0033474) #23	Smad6 (MGP_SPRETEiJ_G0033475) #26	Lctl (MGP_SPRETEiJ_G0033476) #28	Zwilch (MGP_SPRETEiJ_G0033477) #29	Rpl4 (MGP_SPRETEiJ_G0033478) #30	Snapc5 (MGP_SPRETEiJ_G0033479) #31	Map2k1 (MGP_SPRETEiJ_G0033480) #32	MGP_SPRETEiJ_G0033481	Tipin (MGP_SPRETEiJ_G0033482) #33	Dis3l (MGP_SPRETEiJ_G0033483) #34	Megf11 (MGP_SPRETEiJ_G0033484) #35	Rab11a (MGP_SPRETEiJ_G0033485) #36	Dennd4a (MGP_SPRETEiJ_G0033486) #37	Slc24a1 (MGP_SPRETEiJ_G0033487)	Ints14 (MGP_SPRETEiJ_G0033488)
Steppe mouse	MODERN SPECIES	3365	Paqr5 (ENSMSIG00000001567)	Glce (ENSMSIG00000001614)	Spesp1 (ENSMSIG00000001679) #9	ENSMSIG00000001693 #10	Coro2b (ENSMSIG00000001799) #12	Itga11 (ENSMSIG00000001884) #13	Fem1b (ENSMSIG00000001951) #14	Cln6 (ENSMSIG00000001974) #15	ENSMSIG00000001996 #16	Pias1 (ENSMSIG00000002027) #17	Skor1 (ENSMSIG00000002179) #18	Map2k5 (ENSMSIG00000002321) #19	2300009A05Rik (ENSMSIG00000002599) #20	Iqch (ENSMSIG00000002651) #21	ENSMSIG00000003630	Aagab (ENSMSIG00000003642) #22	Smad3 (ENSMSIG00000003679) #23	ENSMSIG00000003710	Smad6 (ENSMSIG00000003718) #26	ENSMSIG00000003749	ENSMSIG00000003769	Lctl (ENSMSIG00000003776) #28	Zwilch (ENSMSIG00000003872) #29	Rpl4 (ENSMSIG00000004124) #30	Snapc5 (ENSMSIG00000004231) #31	Map2k1 (ENSMSIG00000004246) #32	Uchl4 (ENSMSIG00000004289)	Tipin (ENSMSIG00000004296) #33	Dis3l (ENSMSIG00000004353) #34	Megf11 (ENSMSIG00000004481) #35	Rab11a (ENSMSIG00000004938) #36
Ryukyu mouse	MODERN SPECIES	18	Kif23 (MGP_CAROLIEiJ_G0032319)	Paqr5 (MGP_CAROLIEiJ_G0032320)	Glce (MGP_CAROLIEiJ_G0032321)	Spesp1 (MGP_CAROLIEiJ_G0032322) #9	Anp32a (MGP_CAROLIEiJ_G0032323) #10	Coro2b (MGP_CAROLIEiJ_G0032324) #12	Itga11 (MGP_CAROLIEiJ_G0032325) #13	Fem1b (MGP_CAROLIEiJ_G0032326) #14	Cln6 (MGP_CAROLIEiJ_G0032327) #15	Calml4 (MGP_CAROLIEiJ_G0032328) #16	Pias1 (MGP_CAROLIEiJ_G0032329) #17	Skor1 (MGP_CAROLIEiJ_G0032330) #18	Map2k5 (MGP_CAROLIEiJ_G0032331) #19	2300009A05Rik (MGP_CAROLIEiJ_G0032332) #20	Iqch (MGP_CAROLIEiJ_G0032333) #21	Aagab (MGP_CAROLIEiJ_G0032334) #22	Smad3 (MGP_CAROLIEiJ_G0032335) #23	Smad6 (MGP_CAROLIEiJ_G0032336) #26	Lctl (MGP_CAROLIEiJ_G0032337) #28	Zwilch (MGP_CAROLIEiJ_G0032338) #29	Rpl4 (MGP_CAROLIEiJ_G0032339) #30	Snapc5 (MGP_CAROLIEiJ_G0032340) #31	Map2k1 (MGP_CAROLIEiJ_G0032341) #32	MGP_CAROLIEiJ_G0032342	Tipin (MGP_CAROLIEiJ_G0032343) #33	Dis3l (MGP_CAROLIEiJ_G0032344) #34	Megf11 (MGP_CAROLIEiJ_G0032345) #35	Rab11a (MGP_CAROLIEiJ_G0032346) #36	Dennd4a (MGP_CAROLIEiJ_G0032347) #37	Slc24a1 (MGP_CAROLIEiJ_G0032348)	Ints14 (MGP_CAROLIEiJ_G0032349)
Shrew mouse	MODERN SPECIES	1	Kif23 (MGP_PahariEiJ_G0015185)	Paqr5 (MGP_PahariEiJ_G0015186)	Glce (MGP_PahariEiJ_G0015187)	Spesp1 (MGP_PahariEiJ_G0015188) #9	Anp32a (MGP_PahariEiJ_G0015189) #10	Coro2b (MGP_PahariEiJ_G0015190) #12	Itga11 (MGP_PahariEiJ_G0015191) #13	Fem1b (MGP_PahariEiJ_G0015192) #14	MGP_PahariEiJ_G0015193	Calml4 (MGP_PahariEiJ_G0015194) #16	Pias1 (MGP_PahariEiJ_G0015195) #17	Skor1 (MGP_PahariEiJ_G0015196) #18	Map2k5 (MGP_PahariEiJ_G0015197) #19	2300009A05Rik (MGP_PahariEiJ_G0015198) #20	Iqch (MGP_PahariEiJ_G0015199) #21	Aagab (MGP_PahariEiJ_G0015200) #22	Smad3 (MGP_PahariEiJ_G0015201) #23	Smad6 (MGP_PahariEiJ_G0015202) #26	Zwilch (MGP_PahariEiJ_G0015204) #29	Rpl4 (MGP_PahariEiJ_G0015205) #30	Snapc5 (MGP_PahariEiJ_G0015206) #31	Map2k1 (MGP_PahariEiJ_G0015207) #32	Tipin (MGP_PahariEiJ_G0015208) #33	Dis3l (MGP_PahariEiJ_G0015209) #34	Megf11 (MGP_PahariEiJ_G0015210) #35	Rab11a (MGP_PahariEiJ_G0015211) #36	Dennd4a (MGP_PahariEiJ_G0015212) #37	Slc24a1 (MGP_PahariEiJ_G0015213)	Ints14 (MGP_PahariEiJ_G0015214)	Hacd3 (MGP_PahariEiJ_G0015215)	Dpp8 (MGP_PahariEiJ_G0015216)
Rat	MODERN SPECIES	18	Paqr5 (ENSRNOG00000014164)	Glce (ENSRNOG00000025372)	Spesp1 (ENSRNOG00000025359) #9	Anp32a (ENSRNOG00000014846) #10	Coro2b (ENSRNOG00000015257) #12	Itga11 (ENSRNOG00000006723) #13	Fem1b (ENSRNOG00000007077) #14	Cln6 (ENSRNOG00000007164) #15	Calml4 (ENSRNOG00000038202) #16	Pias1 (ENSRNOG00000034272) #17	Skor1 (ENSRNOG00000013959) #18	Map2k5 (ENSRNOG00000007926) #19	AC132740.1 (ENSRNOG00000054780)	C8h15orf61 (ENSRNOG00000008340) #20	Iqch (ENSRNOG00000008353) #21	Aagab (ENSRNOG00000008424) #22	Smad3 (ENSRNOG00000008620) #23	Smad6 (ENSRNOG00000009173) #26	Lctl (ENSRNOG00000009193) #28	Zwilch (ENSRNOG00000009303) #29	Rpl4 (ENSRNOG00000009378) #30	Map2k1 (ENSRNOG00000010176) #32	Tipin (ENSRNOG00000043068) #33	Dis3l (ENSRNOG00000010537) #34	Megf11 (ENSRNOG00000010634) #35	Rab11a (ENSRNOG00000011302) #36	LOC120094392 (ENSRNOG00000071140)	Dennd4a (ENSRNOG00000011739) #37	Slc24a1 (ENSRNOG00000052051)	Ints14 (ENSRNOG00000012469)	Hacd3 (ENSRNOG00000030232)
Upper Galilee mountains blind mole rat	MODERN SPECIES	955	Paqr5 (ENSNGAG00000002130)	Glce (ENSNGAG00000014759)	Spesp1 (ENSNGAG00000012498) #9	ENSNGAG00000005322 #10	ENSNGAG00000017524 #10	Coro2b (ENSNGAG00000024331) #12	Itga11 (ENSNGAG00000024101) #13	ENSNGAG00000021620 #14	Cln6 (ENSNGAG00000023832) #15	Calml4 (ENSNGAG00000016088) #16	Pias1 (ENSNGAG00000022735) #17	Skor1 (ENSNGAG00000020060) #18	Map2k5 (ENSNGAG00000011076) #19	2300009A05Rik (ENSNGAG00000004715) #20	Iqch (ENSNGAG00000019505) #21	ENSNGAG00000010708 #22	Smad3 (ENSNGAG00000023535) #23	ENSNGAG00000022756	Smad6 (ENSNGAG00000021223) #26	Lctl (ENSNGAG00000012911) #28	Zwilch (ENSNGAG00000016626) #29	ENSNGAG00000006653 #30	Snapc5 (ENSNGAG00000006133) #31	Map2k1 (ENSNGAG00000006894) #32	Tipin (ENSNGAG00000018237) #33	Dis3l (ENSNGAG00000017008) #34	Megf11 (ENSNGAG00000011352) #35	Rab11a (ENSNGAG00000013726) #36	ENSNGAG00000022619 #37	Slc24a1 (ENSNGAG00000010674)	Ints14 (ENSNGAG00000007105)
Lesser Egyptian jerboa	MODERN SPECIES	92					Anp32a (ENSJJAG00000019278) #10	Coro2b (ENSJJAG00000003058) #12	Itga11 (ENSJJAG00000007244) #13	Fem1b (ENSJJAG00000018686) #14	Cln6 (ENSJJAG00000024405) #15	Calml4 (ENSJJAG00000014113) #16	ENSJJAG00000019728 #17	Skor1 (ENSJJAG00000003624) #18	Map2k5 (ENSJJAG00000024208) #19	2300009A05Rik (ENSJJAG00000019436) #20	Iqch (ENSJJAG00000024416) #21	ENSJJAG00000018312 #22	Smad3 (ENSJJAG00000021414) #23	Smad6 (ENSJJAG00000019623) #26	Lctl (ENSJJAG00000013579) #28	Zwilch (ENSJJAG00000010189) #29	ENSJJAG00000013677 #30	Snapc5 (ENSJJAG00000022013) #31	Map2k1 (ENSJJAG00000021452) #32	Tipin (ENSJJAG00000017947) #33	Dis3l (ENSJJAG00000016147) #34	ENSJJAG00000019234	Megf11 (ENSJJAG00000023890) #35	ENSJJAG00000015445 #36	ENSJJAG00000012113 #37	Slc24a1 (ENSJJAG00000009344)	Ints14 (ENSJJAG00000005359)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Hystricomorpha	ANCESTRAL SPECIES	36	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.vb #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Hystricomorpha_a	ANCESTRAL SPECIES	38	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.vb #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Hystricomorpha_b	ANCESTRAL SPECIES	35	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.vb #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Degu	DUPLICATION
Degu	MODERN SPECIES	67	GLCE (ENSODEG00000015883)	ENSODEG00000016071 #10	CORO2B (ENSODEG00000016099) #12	ITGA11 (ENSODEG00000015700) #13	ENSODEG00000020366	ENSODEG00000016475 #14	CLN6 (ENSODEG00000015888) #15	CALML4 (ENSODEG00000015441) #16	PIAS1 (ENSODEG00000016418) #17	SKOR1 (ENSODEG00000015903) #18	MAP2K5 (ENSODEG00000015607) #19	ENSODEG00000016511	C15orf61 (ENSODEG00000016721) #20	IQCH (ENSODEG00000016134) #21	ENSODEG00000020336	ENSODEG00000015886 #22	SMAD3 (ENSODEG00000015739) #23	SMAD6 (ENSODEG00000016272) #26	ENSODEG00000020317	LCTL (ENSODEG00000016271) #28	ZWILCH (ENSODEG00000016374) #29	ENSODEG00000016495 #30	MAP2K1 (ENSODEG00000016739) #32	DIS3L (ENSODEG00000015811) #34	MEGF11 (ENSODEG00000015967) #35	ENSODEG00000016878 #36	ENSODEG00000016435	ENSODEG00000016544 #37	SLC24A1 (ENSODEG00000016047)	INTS14 (ENSODEG00000017006)	HACD3 (ENSODEG00000016975)
Degu	MODERN SPECIES	122														ENSODEG00000006114	ZPLD1 (ENSODEG00000007525)	ENSODEG00000007067 #22	ENSODEG00000005667	NFKBIZ (ENSODEG00000005703)	ENSODEG00000005326	ENSODEG00000007096	NXPE3 (ENSODEG00000006809)	ENSODEG00000006503	ENSODEG00000005842	ZBTB11 (ENSODEG00000006262)	ENSODEG00000019290	ENSODEG00000005207	SENP7 (ENSODEG00000006738)	ENSODEG00000005550	IMPG2 (ENSODEG00000006079)	ABI3BP (ENSODEG00000005855)	ENSODEG00000005535
Long-tailed chinchilla	MODERN SPECIES	157	KIF23 (ENSCLAG00000009415)	PAQR5 (ENSCLAG00000008730)	GLCE (ENSCLAG00000009057)	SPESP1 (ENSCLAG00000009992) #9	ENSCLAG00000010256 #10	CORO2B (ENSCLAG00000006658) #12	ITGA11 (ENSCLAG00000006568) #13	FEM1B (ENSCLAG00000004834) #14	CLN6 (ENSCLAG00000007035) #15	CALML4 (ENSCLAG00000008707) #16	PIAS1 (ENSCLAG00000008129) #17	SKOR1 (ENSCLAG00000007488) #18	MAP2K5 (ENSCLAG00000005277) #19	C15orf61 (ENSCLAG00000008894) #20	IQCH (ENSCLAG00000011031) #21	AAGAB (ENSCLAG00000008364) #22	SMAD3 (ENSCLAG00000005027) #23	ENSCLAG00000005550 #26	LCTL (ENSCLAG00000004564) #28	ZWILCH (ENSCLAG00000010124) #29	RPL4 (ENSCLAG00000010827) #30	SNAPC5 (ENSCLAG00000011660) #31	MAP2K1 (ENSCLAG00000013042) #32	TIPIN (ENSCLAG00000004924) #33	DIS3L (ENSCLAG00000005741) #34	MEGF11 (ENSCLAG00000013146) #35	RAB11A (ENSCLAG00000007435) #36	DENND4A (ENSCLAG00000007003) #37	SLC24A1 (ENSCLAG00000013073)	INTS14 (ENSCLAG00000009395)	HACD3 (ENSCLAG00000010725)
Guinea pig	MODERN SPECIES						GLCE (ENSCPOG00000020608)	ENSCPOG00000008829 #10	CORO2B (ENSCPOG00000023117) #12	ITGA11 (ENSCPOG00000012877) #13	FEM1B (ENSCPOG00000031057) #14	CLN6 (ENSCPOG00000007282) #15	CALML4 (ENSCPOG00000033517) #16	PIAS1 (ENSCPOG00000007278) #17	SKOR1 (ENSCPOG00000012665) #18	MAP2K5 (ENSCPOG00000000970) #19	C15orf61 (ENSCPOG00000022542) #20	AAGAB (ENSCPOG00000000965) #22	SMAD3 (ENSCPOG00000021314) #23	SMAD6 (ENSCPOG00000001535) #26	DST (ENSCPOG00000005092)	BEND6 (ENSCPOG00000015453)	ZNF451 (ENSCPOG00000002491)	BAG2 (ENSCPOG00000040302)	RAB23 (ENSCPOG00000030218)	ENSCPOG00000035048	PRIM2 (ENSCPOG00000003912)	KHDRBS2 (ENSCPOG00000025621)	LGSN (ENSCPOG00000008736)	PTP4A1 (ENSCPOG00000032105)	ENSCPOG00000007146	ENSCPOG00000030019	DAPK2 (ENSCPOG00000000890)
Naked mole-rat female	MODERN SPECIES	19	KIF23 (ENSHGLG00000009784)	PAQR5 (ENSHGLG00000009727)	GLCE (ENSHGLG00000033764)	SPESP1 (ENSHGLG00000046924) #9	ENSHGLG00000013229 #10	CORO2B (ENSHGLG00000015273) #12	ITGA11 (ENSHGLG00000007233) #13	FEM1B (ENSHGLG00000017948) #14	CLN6 (ENSHGLG00000017958) #15	Calml4 (ENSHGLG00000018794) #16	Pias1 (ENSHGLG00000019002) #17	SKOR1 (ENSHGLG00000017297) #18	MAP2K5 (ENSHGLG00000006627) #19	C15orf61 (ENSHGLG00000038870) #20	ENSHGLG00000026352 #21	AAGAB (ENSHGLG00000038898) #22	SMAD3 (ENSHGLG00000048787) #23	SMAD6 (ENSHGLG00000008453) #26	LCTL (ENSHGLG00000015669) #28	ZWILCH (ENSHGLG00000016059) #29	ENSHGLG00000008054 #30	ENSHGLG00000040904 #31	ENSHGLG00000010036 #32	ENSHGLG00000048822	ENSHGLG00000005971 #33	ENSHGLG00000007770 #34	MEGF11 (ENSHGLG00000011012) #35	RAB11A (ENSHGLG00000048551) #36	ENSHGLG00000044288	DENND4A (ENSHGLG00000009810) #37	SLC24A1 (ENSHGLG00000008872)
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Marmotini	ANCESTRAL SPECIES	9	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Squirrel	MODERN SPECIES	71	RPLP1 (ENSSTOG00000027893)	KIF23 (ENSSTOG00000022809)	PAQR5 (ENSSTOG00000000507)	GLCE (ENSSTOG00000019509)	ENSSTOG00000015929 #10	CORO2B (ENSSTOG00000015918) #12	ITGA11 (ENSSTOG00000015545) #13	FEM1B (ENSSTOG00000015544) #14	CLN6 (ENSSTOG00000015540) #15	CALML4 (ENSSTOG00000015539) #16	PIAS1 (ENSSTOG00000015532) #17	SKOR1 (ENSSTOG00000002675) #18	MAP2K5 (ENSSTOG00000010318) #19	C15orf61 (ENSSTOG00000010312) #20	IQCH (ENSSTOG00000010299) #21	AAGAB (ENSSTOG00000010291) #22	SMAD3 (ENSSTOG00000010286) #23	SMAD6 (ENSSTOG00000000696) #26	LCTL (ENSSTOG00000028073) #28	ZWILCH (ENSSTOG00000009607) #29	RPL4 (ENSSTOG00000009221) #30	SNAPC5 (ENSSTOG00000009201) #31	MAP2K1 (ENSSTOG00000009190) #32	TIPIN (ENSSTOG00000009182) #33	DIS3L (ENSSTOG00000009158) #34	MEGF11 (ENSSTOG00000015258) #35	RAB11A (ENSSTOG00000015255) #36	DENND4A (ENSSTOG00000026966) #37	SLC24A1 (ENSSTOG00000002228)	INTS14 (ENSSTOG00000002217)	HACD3 (ENSSTOG00000002211)
Arctic ground squirrel	MODERN SPECIES	397						ITGA11 (ENSUPAG00010017705) #13	FEM1B (ENSUPAG00010017736) #14	CLN6 (ENSUPAG00010017740) #15	CALML4 (ENSUPAG00010017747) #16	PIAS1 (ENSUPAG00010017772) #17	ENSUPAG00010017781	SKOR1 (ENSUPAG00010017792) #18	MAP2K5 (ENSUPAG00010017819) #19	C15orf61 (ENSUPAG00010017904) #20	IQCH (ENSUPAG00010017914) #21	AAGAB (ENSUPAG00010018001) #22	SMAD3 (ENSUPAG00010018010) #23	ENSUPAG00010018048	SMAD6 (ENSUPAG00010018050) #26	LCTL (ENSUPAG00010018063) #28	ZWILCH (ENSUPAG00010018079) #29	RPL4 (ENSUPAG00010018119) #30	SNAPC5 (ENSUPAG00010018142) #31	MAP2K1 (ENSUPAG00010018149) #32
Alpin marmot	MODERN SPECIES	7	PAQR5 (ENSMMMG00000005396)	GLCE (ENSMMMG00000005432)	NOX5 (ENSMMMG00000005478) #8	SPESP1 (ENSMMMG00000005545) #9	ENSMMMG00000005555 #10	CORO2B (ENSMMMG00000005600) #12	ITGA11 (ENSMMMG00000005622) #13	ENSMMMG00000005671 #14	CLN6 (ENSMMMG00000005687) #15	CALML4 (ENSMMMG00000005699) #16	PIAS1 (ENSMMMG00000005733) #17	SKOR1 (ENSMMMG00000005773) #18	MAP2K5 (ENSMMMG00000005809) #19	ENSMMMG00000005844	IQCH (ENSMMMG00000005869) #21	AAGAB (ENSMMMG00000005970) #22	SMAD3 (ENSMMMG00000005977) #23	ENSMMMG00000006027	SMAD6 (ENSMMMG00000006032) #26	LCTL (ENSMMMG00000006061) #28	ZWILCH (ENSMMMG00000006077) #29	ENSMMMG00000006104	RPL4 (ENSMMMG00000006109) #30	SNAPC5 (ENSMMMG00000006163) #31	MAP2K1 (ENSMMMG00000006173) #32	TIPIN (ENSMMMG00000006196) #33	DIS3L (ENSMMMG00000006220) #34	MEGF11 (ENSMMMG00000006311) #35	RAB11A (ENSMMMG00000006747) #36	ENSMMMG00000006762	DENND4A (ENSMMMG00000006769) #37
Eurasian red squirrel	MODERN SPECIES	11	GLCE (ENSSVLG00005007694)	NOX5 (ENSSVLG00005007597) #8	SPESP1 (ENSSVLG00005007565) #9	ENSSVLG00005007513	ENSSVLG00005007452 #10	CORO2B (ENSSVLG00005007364) #12	ITGA11 (ENSSVLG00005007326) #13	FEM1B (ENSSVLG00005007302) #14	CLN6 (ENSSVLG00005007215) #15	CALML4 (ENSSVLG00005007109) #16	PIAS1 (ENSSVLG00005007019) #17	SKOR1 (ENSSVLG00005006917) #18	MAP2K5 (ENSSVLG00005006656) #19	C15orf61 (ENSSVLG00005006592) #20	IQCH (ENSSVLG00005025085) #21	AAGAB (ENSSVLG00005025018) #22	SMAD3 (ENSSVLG00005024991) #23	ENSSVLG00005024968	SMAD6 (ENSSVLG00005024946) #26	LCTL (ENSSVLG00005024912) #28	ZWILCH (ENSSVLG00005024833) #29	ENSSVLG00005024744 #30	SNAPC5 (ENSSVLG00005024729) #31	MAP2K1 (ENSSVLG00005024707) #32	TIPIN (ENSSVLG00005024668) #33	DIS3L (ENSSVLG00005024622) #34	MEGF11 (ENSSVLG00005024351) #35	RAB11A (ENSSVLG00005024246) #36	DENND4A (ENSSVLG00005024160) #37	SLC24A1 (ENSSVLG00005023979)	INTS14 (ENSSVLG00005023820)
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000007218 #22
Common shrew	MODERN SPECIES	355																ENSSARG00000002117 #22
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Suina	ANCESTRAL SPECIES	12	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Chacoan peccary	MODERN SPECIES	786	KIF23 (ENSCWAG00000012586)	PAQR5 (ENSCWAG00000012711)	GLCE (ENSCWAG00000012796)	SPESP1 (ENSCWAG00000012853) #9	ENSCWAG00000012876 #10	CORO2B (ENSCWAG00000012937) #12	ITGA11 (ENSCWAG00000013057) #13	FEM1B (ENSCWAG00000013140) #14	CLN6 (ENSCWAG00000013181) #15	CALML4 (ENSCWAG00000013422) #16	PIAS1 (ENSCWAG00000013465) #17	SKOR1 (ENSCWAG00000013676) #18	MAP2K5 (ENSCWAG00000013886) #19	C15orf61 (ENSCWAG00000014382) #20	IQCH (ENSCWAG00000014432) #21	AAGAB (ENSCWAG00000014993) #22	SMAD3 (ENSCWAG00000015026) #23	SMAD6 (ENSCWAG00000015079) #26	LCTL (ENSCWAG00000015109) #28	ZWILCH (ENSCWAG00000015266) #29	RPL4 (ENSCWAG00000015376) #30	SNAPC5 (ENSCWAG00000015485) #31	MAP2K1 (ENSCWAG00000015519) #32	TIPIN (ENSCWAG00000015560) #33	DIS3L (ENSCWAG00000015597) #34	MEGF11 (ENSCWAG00000015726) #35	RAB11A (ENSCWAG00000016259) #36	DENND4A (ENSCWAG00000016363) #37	SLC24A1 (ENSCWAG00000017106)	INTS14 (ENSCWAG00000017595)	HACD3 (ENSCWAG00000017975)
Pig	MODERN SPECIES		GLCE (ENSSSCG00000026078)	NOX5 (ENSSSCG00000004966) #8	SPESP1 (ENSSSCG00000032244) #9	ENSSSCG00000004963 #10	CORO2B (ENSSSCG00000004962) #12	ITGA11 (ENSSSCG00000004961) #13	FEM1B (ENSSSCG00000022419) #14	CLN6 (ENSSSCG00000004957) #15	CALML4 (ENSSSCG00000026517) #16	PIAS1 (ENSSSCG00000004958) #17	SKOR1 (ENSSSCG00000004956) #18	MAP2K5 (ENSSSCG00000004955) #19	C15orf61 (ENSSSCG00000004954) #20	ENSSSCG00000034963 #21	ENSSSCG00000057448 #21	AAGAB (ENSSSCG00000004951) #22	SMAD3 (ENSSSCG00000004952) #23	SMAD6 (ENSSSCG00000004948) #26	LCTL (ENSSSCG00000004947) #28	ENSSSCG00000051767	ZWILCH (ENSSSCG00000004946) #29	RPL4 (ENSSSCG00000004945) #30	SNAPC5 (ENSSSCG00000038941) #31	MAP2K1 (ENSSSCG00000004943) #32	TIPIN (ENSSSCG00000004942) #33	DIS3L (ENSSSCG00000004941) #34	MEGF11 (ENSSSCG00000004939) #35	RAB11A (ENSSSCG00000032312) #36	DENND4A (ENSSSCG00000004938) #37	SLC24A1 (ENSSSCG00000004937)	INTS14 (ENSSSCG00000004936)
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Camelidae	ANCESTRAL SPECIES	83										ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Arabian camel	MODERN SPECIES	32	TPM1 (ENSCDRG00005006508)	ENSCDRG00005006370	ENSCDRG00005004006	CA12 (ENSCDRG00005003913)	APH1B (ENSCDRG00005003835)	RAB8B (ENSCDRG00005003808)	ENSCDRG00005003749	ENSCDRG00005003720	CLN6 (ENSCDRG00005003662) #15	CALML4 (ENSCDRG00005003629) #16	ENSCDRG00005003580	PIAS1 (ENSCDRG00005003494) #17	MAP2K5 (ENSCDRG00005003152) #19	C15orf61 (ENSCDRG00005003109) #20	IQCH (ENSCDRG00005002929) #21	AAGAB (ENSCDRG00005002843) #22	SMAD3 (ENSCDRG00005002780) #23	ENSCDRG00005002755 #26	ENSCDRG00005002745	LCTL (ENSCDRG00005002712) #28	ZWILCH (ENSCDRG00005002673) #29	ENSCDRG00005002627 #30	SNAPC5 (ENSCDRG00005002604) #31	MAP2K1 (ENSCDRG00005002580) #32	TIPIN (ENSCDRG00005002562) #33	DIS3L (ENSCDRG00005002526) #34	MEGF11 (ENSCDRG00005002479) #35	RAB11A (ENSCDRG00005002443) #36	DENND4A (ENSCDRG00005002286) #37	SLC24A1 (ENSCDRG00005002129)	INTS14 (ENSCDRG00005001994)
Alpaca	MODERN SPECIES	3324													MAP2K5 (ENSVPAG00000008890) #19	C15orf61 (ENSVPAG00000008887) #20	IQCH (ENSVPAG00000008883) #21	AAGAB (ENSVPAG00000008879) #22
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.xc #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.xc.b #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000012563.i.a	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00390000000134.b.p.b	ENSGT00940000158146 #26	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.xc.b #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000012563.i.a	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00390000000134.b.p.b	ENSGT00940000158146 #26	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.xc.b #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000012563.i.a	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT01010000222830.d.a	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00390000000134.b.p.b	ENSGT00940000158146 #26	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.xc.b #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000012563.i.a	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37
Monodontidae	ANCESTRAL SPECIES	27	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00390000005300	ENSGT00940000164579.e.b	ENSGT00390000008748.b	ENSGT00860000136093.c	ENSGT00940000157725	ENSGT00940000158086	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00390000000134.b.p.b	ENSGT00940000158146 #26	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.xc.b #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000012563.i.a	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37
Narwhal	MODERN SPECIES	308	GLCE (ENSMMNG00015008649)	ENSMMNG00015008639	SPESP1 (ENSMMNG00015008626) #9	ENSMMNG00015008598 #10	CORO2B (ENSMMNG00015008567) #12	ITGA11 (ENSMMNG00015008533) #13	FEM1B (ENSMMNG00015008513) #14	CLN6 (ENSMMNG00015008469) #15	CALML4 (ENSMMNG00015008408) #16	PIAS1 (ENSMMNG00015008373) #17	ENSMMNG00015008358	SKOR1 (ENSMMNG00015008331) #18	MAP2K5 (ENSMMNG00015008216) #19	C15orf61 (ENSMMNG00015008139) #20	IQCH (ENSMMNG00015008052) #21	AAGAB (ENSMMNG00015007942) #22	SMAD3 (ENSMMNG00015007909) #23	ENSMMNG00015007889	SMAD6 (ENSMMNG00015007869) #26	ENSMMNG00015007816	LCTL (ENSMMNG00015007784) #28	ZWILCH (ENSMMNG00015007746) #29	ENSMMNG00015007652 #30	SNAPC5 (ENSMMNG00015007601) #31	MAP2K1 (ENSMMNG00015007579) #32	ENSMMNG00015007536	TIPIN (ENSMMNG00015007474) #33	DIS3L (ENSMMNG00015007393) #34	MEGF11 (ENSMMNG00015007280) #35	RAB11A (ENSMMNG00015007170) #36	DENND4A (ENSMMNG00015007114) #37
Beluga whale	MODERN SPECIES	20	GLCE (ENSDLEG00000000492)	SPESP1 (ENSDLEG00000000475) #9	ANP32A (ENSDLEG00000000431) #10	CORO2B (ENSDLEG00000000393) #12	ITGA11 (ENSDLEG00000000304) #13	FEM1B (ENSDLEG00000011544) #14	CLN6 (ENSDLEG00000011495) #15	CALML4 (ENSDLEG00000011480) #16	PIAS1 (ENSDLEG00000011410) #17	ENSDLEG00000011393	ENSDLEG00000011378	SKOR1 (ENSDLEG00000011320) #18	MAP2K5 (ENSDLEG00000011046) #19	CUNH15orf61 (ENSDLEG00000010984) #20	IQCH (ENSDLEG00000010864) #21	AAGAB (ENSDLEG00000010803) #22	SMAD3 (ENSDLEG00000010707) #23	ENSDLEG00000010689	SMAD6 (ENSDLEG00000010676) #26	ENSDLEG00000010657	ENSDLEG00000010647	LCTL (ENSDLEG00000010607) #28	ZWILCH (ENSDLEG00000010482) #29	RPL4 (ENSDLEG00000010430) #30	SNAPC5 (ENSDLEG00000010421) #31	MAP2K1 (ENSDLEG00000010364) #32	ENSDLEG00000010343	TIPIN (ENSDLEG00000010313) #33	DIS3L (ENSDLEG00000009982) #34	MEGF11 (ENSDLEG00000009720) #35	RAB11A (ENSDLEG00000009643) #36
Vaquita	MODERN SPECIES	11	GLCE (ENSPSNG00000001258)	ENSPSNG00000001278	SPESP1 (ENSPSNG00000001290) #9	ENSPSNG00000001312 #10	CORO2B (ENSPSNG00000001338) #12	ITGA11 (ENSPSNG00000001465) #13	FEM1B (ENSPSNG00000001608) #14	CLN6 (ENSPSNG00000001671) #15	CALML4 (ENSPSNG00000001723) #16	PIAS1 (ENSPSNG00000001758) #17	ENSPSNG00000001804	SKOR1 (ENSPSNG00000001839) #18	MAP2K5 (ENSPSNG00000001943) #19	C15orf61 (ENSPSNG00000002043) #20	IQCH (ENSPSNG00000002126) #21	AAGAB (ENSPSNG00000002239) #22	SMAD3 (ENSPSNG00000002263) #23	ENSPSNG00000002286	SMAD6 (ENSPSNG00000002293) #26	ENSPSNG00000002306	LCTL (ENSPSNG00000002318) #28	ZWILCH (ENSPSNG00000002336) #29	ENSPSNG00000002352 #30	SNAPC5 (ENSPSNG00000002388) #31	MAP2K1 (ENSPSNG00000002407) #32	TIPIN (ENSPSNG00000002436) #33	ENSPSNG00000002464 #34	MEGF11 (ENSPSNG00000002539) #35	RAB11A (ENSPSNG00000002694) #36	ENSPSNG00000002715	DENND4A (ENSPSNG00000002770) #37
Dolphin	MODERN SPECIES	1671												SKOR1 (ENSTTRG00000003036) #18	MAP2K5 (ENSTTRG00000003035) #19	C15orf61 (ENSTTRG00000003034) #20	IQCH (ENSTTRG00000003033) #21	AAGAB (ENSTTRG00000003032) #22	SMAD3 (ENSTTRG00000003030) #23
Sperm whale	MODERN SPECIES	2	KIF23 (ENSPCTG00005020503)	PAQR5 (ENSPCTG00005020467)	GLCE (ENSPCTG00005020426)	SPESP1 (ENSPCTG00005020391) #9	ITGA11 (ENSPCTG00005020249) #13	FEM1B (ENSPCTG00005020203) #14	CLN6 (ENSPCTG00005020048) #15	CALML4 (ENSPCTG00005019999) #16	PIAS1 (ENSPCTG00005019931) #17	ENSPCTG00005019890	ENSPCTG00005019847	SKOR1 (ENSPCTG00005019628) #18	MAP2K5 (ENSPCTG00005018992) #19	C11H15orf61 (ENSPCTG00005018901) #20	IQCH (ENSPCTG00005018285) #21	AAGAB (ENSPCTG00005018169) #22	SMAD3 (ENSPCTG00005018084) #23	ENSPCTG00005018068	SMAD6 (ENSPCTG00005018032) #26	ENSPCTG00005018004	LCTL (ENSPCTG00005017782) #28	ZWILCH (ENSPCTG00005017727) #29	ENSPCTG00005017611 #30	SNAPC5 (ENSPCTG00005017569) #31	MAP2K1 (ENSPCTG00005017538) #32	TIPIN (ENSPCTG00005017493) #33	DIS3L (ENSPCTG00005017408) #34	MEGF11 (ENSPCTG00005016590) #35	RAB11A (ENSPCTG00005016434) #36	DENND4A (ENSPCTG00005016168) #37	SLC24A1 (ENSPCTG00005015689)
Blue whale	MODERN SPECIES	11	GLCE (ENSBMSG00010003338)	ENSBMSG00010003347	SPESP1 (ENSBMSG00010003359) #9	ENSBMSG00010003371 #10	CORO2B (ENSBMSG00010003388) #12	ENSBMSG00010003412	ITGA11 (ENSBMSG00010003422) #13	FEM1B (ENSBMSG00010003441) #14	CLN6 (ENSBMSG00010003453) #15	CALML4 (ENSBMSG00010003507) #16	PIAS1 (ENSBMSG00010003520) #17	SKOR1 (ENSBMSG00010003555) #18	MAP2K5 (ENSBMSG00010003598) #19	C15orf61 (ENSBMSG00010003681) #20	IQCH (ENSBMSG00010003720) #21	AAGAB (ENSBMSG00010003912) #22	SMAD3 (ENSBMSG00010003929) #23	SMAD6 (ENSBMSG00010003960) #26	LCTL (ENSBMSG00010003979) #28	ZWILCH (ENSBMSG00010004025) #29	ENSBMSG00010004041 #30	ENSBMSG00010004081 #31	MAP2K1 (ENSBMSG00010004109) #32	ENSBMSG00010004137	ENSBMSG00010004151 #33	DIS3L (ENSBMSG00010004171) #34	MEGF11 (ENSBMSG00010004218) #35	RAB11A (ENSBMSG00010004363) #36	DENND4A (ENSBMSG00010004402) #37	SLC24A1 (ENSBMSG00010004497)	INTS14 (ENSBMSG00010004651)
Pecora	ANCESTRAL SPECIES	6	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.xc #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Yarkand deer	MODERN SPECIES	3	ENSCHYG00000018101	ENSCHYG00000017784	NOX5 (ENSCHYG00000017570) #8	SPESP1 (ENSCHYG00000017531) #9	ENSCHYG00000017234 #10	CORO2B (ENSCHYG00000016934) #12	ITGA11 (ENSCHYG00000014651) #13	FEM1B (ENSCHYG00000014524) #14	CLN6 (ENSCHYG00000014290) #15	CALML4 (ENSCHYG00000014198) #16	PIAS1 (ENSCHYG00000013992) #17	SKOR1 (ENSCHYG00000013681) #18	MAP2K5 (ENSCHYG00000012261) #19	C15orf61 (ENSCHYG00000012160) #20	IQCH (ENSCHYG00000011825) #21	AAGAB (ENSCHYG00000011610) #22	SMAD3 (ENSCHYG00000011473) #23	SMAD6 (ENSCHYG00000011380) #26	ENSCHYG00000011323	LCTL (ENSCHYG00000011283) #28	ZWILCH (ENSCHYG00000010774) #29	ENSCHYG00000010506 #30	SNAPC5 (ENSCHYG00000010450) #31	ENSCHYG00000010432	MAP2K1 (ENSCHYG00000010364) #32	TIPIN (ENSCHYG00000010297) #33	DIS3L (ENSCHYG00000010099) #34	MEGF11 (ENSCHYG00000009296) #35	ENSCHYG00000009145 #36	ENSCHYG00000009117	DENND4A (ENSCHYG00000008838) #37
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.xc #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Siberian musk deer	MODERN SPECIES	70	GLCE (ENSMMSG00000002545)	NOX5 (ENSMMSG00000002533) #8	ENSMMSG00000002508	ENSMMSG00000002461 #10	ENSMMSG00000002437	CORO2B (ENSMMSG00000002385) #12	ITGA11 (ENSMMSG00000002350) #13	FEM1B (ENSMMSG00000002327) #14	CLN6 (ENSMMSG00000002230) #15	CALML4 (ENSMMSG00000002206) #16	PIAS1 (ENSMMSG00000002174) #17	SKOR1 (ENSMMSG00000002112) #18	MAP2K5 (ENSMMSG00000001850) #19	C15orf61 (ENSMMSG00000001796) #20	IQCH (ENSMMSG00000001575) #21	AAGAB (ENSMMSG00000001517) #22	SMAD3 (ENSMMSG00000001493) #23	SMAD6 (ENSMMSG00000001473) #26	LCTL (ENSMMSG00000001442) #28	ZWILCH (ENSMMSG00000001358) #29	ENSMMSG00000001277 #30	SNAPC5 (ENSMMSG00000001249) #31	MAP2K1 (ENSMMSG00000001210) #32	TIPIN (ENSMMSG00000001178) #33	DIS3L (ENSMMSG00000001148) #34	MEGF11 (ENSMMSG00000001023) #35	ENSMMSG00000000971 #36	DENND4A (ENSMMSG00000000845) #37	ENSMMSG00000000783	SLC24A1 (ENSMMSG00000000735)	INTS14 (ENSMMSG00000000581)
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.xc #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Caprinae	ANCESTRAL SPECIES	30	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.xc #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764.o #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Goat	DUPLICATION
Goat	MODERN SPECIES	1	NOX5 (ENSCHIG00000023480) #8	SPESP1 (ENSCHIG00000013213) #9	ENSCHIG00000011806 #10	CORO2B (ENSCHIG00000023253) #12	ITGA11 (ENSCHIG00000025296) #13	FEM1B (ENSCHIG00000023393) #14	CLN6 (ENSCHIG00000024128) #15	CALML4 (ENSCHIG00000005207) #16	PIAS1 (ENSCHIG00000014001) #17	ENSCHIG00000003884	ENSCHIG00000010951	SKOR1 (ENSCHIG00000017580) #18	MAP2K5 (ENSCHIG00000022039) #19	C15orf61 (ENSCHIG00000026630) #20	IQCH (ENSCHIG00000009034) #21	ENSCHIG00000015028 #22	SMAD3 (ENSCHIG00000013774) #23	SMAD6 (ENSCHIG00000012651) #26	LCTL (ENSCHIG00000017181) #28	ZWILCH (ENSCHIG00000015830) #29	RPL4 (ENSCHIG00000012421) #30	SNAPC5 (ENSCHIG00000011315) #31	MAP2K1 (ENSCHIG00000021340) #32	ENSCHIG00000000481 #33	DIS3L (ENSCHIG00000009744) #34	MEGF11 (ENSCHIG00000023140) #35	ENSCHIG00000006809	ENSCHIG00000012183 #36	DENND4A (ENSCHIG00000024015) #37	ENSCHIG00000015128	SLC24A1 (ENSCHIG00000023644)
Goat	MODERN SPECIES	9	SHKBP1 (ENSCHIG00000026431)	SPTBN4 (ENSCHIG00000015236)	BLVRB (ENSCHIG00000021831)	SERTAD3 (ENSCHIG00000005317)	SERTAD1 (ENSCHIG00000012650)	PRX (ENSCHIG00000026808)	HIPK4 (ENSCHIG00000017836)	PLD3 (ENSCHIG00000024228)	C19orf47 (ENSCHIG00000027186)	AKT2 (ENSCHIG00000015049)	TTC9B (ENSCHIG00000007381)	MAP3K10 (ENSCHIG00000019302)	ENSCHIG00000018631	ZNF546 (ENSCHIG00000011952)	PSMC4 (ENSCHIG00000016431)	ENSCHIG00000012448 #22	ENSCHIG00000022668	FBL (ENSCHIG00000021562)	DYRK1B (ENSCHIG00000013926)	ENSCHIG00000020003	ENSCHIG00000015792	LGALS15 (ENSCHIG00000020836)	LGALS16 (ENSCHIG00000024926)	EID2 (ENSCHIG00000007961)	ENSCHIG00000011678	ENSCHIG00000018741	DLL3 (ENSCHIG00000009219)	TIMM50 (ENSCHIG00000003131)	SUPT5H (ENSCHIG00000023821)	ENSCHIG00000005676	RPS16 (ENSCHIG00000024160)
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	23	KIF23 (ENSOARG00020013394)	GLCE (ENSOARG00020013246)	NOX5 (ENSOARG00020012967) #8	SPESP1 (ENSOARG00020012911) #9	ENSOARG00020012822 #10	CORO2B (ENSOARG00020012576) #12	ITGA11 (ENSOARG00020012015) #13	FEM1B (ENSOARG00020011984) #14	CLN6 (ENSOARG00020011715) #15	CALML4 (ENSOARG00020011634) #16	PIAS1 (ENSOARG00020011172) #17	SKOR1 (ENSOARG00020010969) #18	MAP2K5 (ENSOARG00020009665) #19	C15orf61 (ENSOARG00020009584) #20	IQCH (ENSOARG00020008820) #21	ENSOARG00020008703 #22	SMAD3 (ENSOARG00020008589) #23	SMAD6 (ENSOARG00020008552) #26	LCTL (ENSOARG00020008384) #28	ZWILCH (ENSOARG00020008203) #29	RPL4 (ENSOARG00020008040) #30	SNAPC5 (ENSOARG00020007973) #31	MAP2K1 (ENSOARG00020007890) #32	TIPIN (ENSOARG00020007825) #33	DIS3L (ENSOARG00020007756) #34	MEGF11 (ENSOARG00020006928) #35	ENSOARG00020006812 #36	DENND4A (ENSOARG00020006221) #37	SLC24A1 (ENSOARG00020006188)	INTS14 (ENSOARG00020006021)	HACD3 (ENSOARG00020005830)
Rambouillet Sheep	MODERN SPECIES	5	SHKBP1 (ENSOARG00020013843)	SPTBN4 (ENSOARG00020013943)	BLVRB (ENSOARG00020014151)	SERTAD3 (ENSOARG00020014364)	SERTAD1 (ENSOARG00020014390)	PRX (ENSOARG00020014413)	HIPK4 (ENSOARG00020014458)	PLD3 (ENSOARG00020014520)	C19orf47 (ENSOARG00020014593)	AKT2 (ENSOARG00020014736)	CCNP (ENSOARG00020014872)	TTC9B (ENSOARG00020015008)	MAP3K10 (ENSOARG00020015050)	ZNF546 (ENSOARG00020015127)	PSMC4 (ENSOARG00020015236)	ENSOARG00020015314 #22	ENSOARG00020015383	ENSOARG00020015769	FBL (ENSOARG00020015836)	DYRK1B (ENSOARG00020015979)	ENSOARG00020016126	ENSOARG00020016175	ENSOARG00020016268	CYP2S1 (ENSOARG00020016415)	AXL (ENSOARG00020016520)	HNRNPUL1 (ENSOARG00020016689)	CCDC97 (ENSOARG00020017796)	TGFB1 (ENSOARG00020017842)	B9D2 (ENSOARG00020017895)	TMEM91 (ENSOARG00020017943)	EXOSC5 (ENSOARG00020018062)
Bovinae	ANCESTRAL SPECIES	33	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.xc #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914.ib #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
American bison	MODERN SPECIES	2972	KIF23 (ENSBBBG00000001518)	PAQR5 (ENSBBBG00000009457)	GLCE (ENSBBBG00000009453)	NOX5 (ENSBBBG00000009452) #8	SPESP1 (ENSBBBG00000001512) #9	ENSBBBG00000009447 #10	CORO2B (ENSBBBG00000009445) #12	ITGA11 (ENSBBBG00000009443) #13	FEM1B (ENSBBBG00000009440) #14	CLN6 (ENSBBBG00000001505) #15	CALML4 (ENSBBBG00000009437) #16	PIAS1 (ENSBBBG00000009435) #17	MAP2K5 (ENSBBBG00000009430) #19	C15orf61 (ENSBBBG00000009428) #20	IQCH (ENSBBBG00000009426) #21	AAGAB (ENSBBBG00000009422) #22	SMAD3 (ENSBBBG00000009419) #23	SMAD6 (ENSBBBG00000001493) #26	LCTL (ENSBBBG00000009415) #28	ZWILCH (ENSBBBG00000007486) #29	RPL4 (ENSBBBG00000009410) #30	SNAPC5 (ENSBBBG00000009405) #31	MAP2K1 (ENSBBBG00000009402) #32	ENSBBBG00000009401	DIS3L (ENSBBBG00000001485) #34	MEGF11 (ENSBBBG00000009393) #35	ENSBBBG00000001484 #36	DENND4A (ENSBBBG00000009388) #37	SLC24A1 (ENSBBBG00000009385)	INTS14 (ENSBBBG00000001482)	HACD3 (ENSBBBG00000009384)
Bos	ANCESTRAL SPECIES	31	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.xc.e.a #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914.ib #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Bos_b	ANCESTRAL SPECIES	28	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.xc.e.a #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914.ib #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Hybrid Bos Indicus	MODERN SPECIES	1	PAQR5 (ENSBIXG00005030752)	GLCE (ENSBIXG00005030727)	NOX5 (ENSBIXG00005030704) #8	SPESP1 (ENSBIXG00005030688) #9	ENSBIXG00005030667 #10	CORO2B (ENSBIXG00005030625) #12	ITGA11 (ENSBIXG00005030585) #13	FEM1B (ENSBIXG00005030567) #14	ENSBIXG00005030548 #15	CALML4 (ENSBIXG00005030510) #16	PIAS1 (ENSBIXG00005030503) #17	SKOR1 (ENSBIXG00005030471) #18	MAP2K5 (ENSBIXG00005030309) #19	C15orf61 (ENSBIXG00005030179) #20	IQCH (ENSBIXG00005030120) #21	AAGAB (ENSBIXG00005030085) #22	SMAD3 (ENSBIXG00005030065) #23	SMAD6 (ENSBIXG00005030012) #26	LCTL (ENSBIXG00005029961) #28	ZWILCH (ENSBIXG00005029921) #29	ENSBIXG00005029889 #30	SNAPC5 (ENSBIXG00005029881) #31	ENSBIXG00005029869 #32	TIPIN (ENSBIXG00005029852) #33	DIS3L (ENSBIXG00005029839) #34	MEGF11 (ENSBIXG00005029582) #35	RAB11A (ENSBIXG00005029469) #36	ENSBIXG00005029457	SLC24A1 (ENSBIXG00005029443)	INTS14 (ENSBIXG00005029402)	HACD3 (ENSBIXG00005029324)
Cow	MODERN SPECIES	1	KIF23 (ENSBTAG00000009983)	PAQR5 (ENSBTAG00000020352)	GLCE (ENSBTAG00000001405)	NOX5 (ENSBTAG00000009030) #8	SPESP1 (ENSBTAG00000005994) #9	ANP32A (ENSBTAG00000012365) #10	CORO2B (ENSBTAG00000012681) #12	ITGA11 (ENSBTAG00000008380) #13	FEM1B (ENSBTAG00000008378) #14	CLN6 (ENSBTAG00000005565) #15	CALML4 (ENSBTAG00000025822) #16	PIAS1 (ENSBTAG00000005564) #17	MAP2K5 (ENSBTAG00000000218) #19	C10H15orf61 (ENSBTAG00000045628) #20	IQCH (ENSBTAG00000013638) #21	AAGAB (ENSBTAG00000040368) #22	SMAD3 (ENSBTAG00000012599) #23	SMAD6 (ENSBTAG00000000625) #26	ENSBTAG00000050356	LCTL (ENSBTAG00000005214) #28	ZWILCH (ENSBTAG00000005213) #29	RPL4 (ENSBTAG00000005211) #30	SNAPC5 (ENSBTAG00000005210) #31	MAP2K1 (ENSBTAG00000033983) #32	TIPIN (ENSBTAG00000000372) #33	DIS3L (ENSBTAG00000000371) #34	MEGF11 (ENSBTAG00000034140) #35	RAB11A (ENSBTAG00000018959) #36	DENND4A (ENSBTAG00000017095) #37	SLC24A1 (ENSBTAG00000025826)	INTS14 (ENSBTAG00000015158)
Bos_a	ANCESTRAL SPECIES	40	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145.xc.e.a #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35
Domestic yak	MODERN SPECIES	2	GLCE (ENSBGRG00000020997)	NOX5 (ENSBGRG00000021070) #8	ENSBGRG00000021382 #9	ENSBGRG00000021463 #10	CORO2B (ENSBGRG00000021747) #12	ITGA11 (ENSBGRG00000021881) #13	FEM1B (ENSBGRG00000022079) #14	CLN6 (ENSBGRG00000022143) #15	CALML4 (ENSBGRG00000022400) #16	PIAS1 (ENSBGRG00000022493) #17	SKOR1 (ENSBGRG00000022855) #18	MAP2K5 (ENSBGRG00000023013) #19	ENSBGRG00000023428	ENSBGRG00000023451 #20	IQCH (ENSBGRG00000023490) #21	AAGAB (ENSBGRG00000023783) #22	SMAD3 (ENSBGRG00000023965) #23	SMAD6 (ENSBGRG00000024050) #26	LCTL (ENSBGRG00000024229) #28	ZWILCH (ENSBGRG00000024356) #29	ENSBGRG00000024489 #30	SNAPC5 (ENSBGRG00000024649) #31	MAP2K1 (ENSBGRG00000024678) #32	TIPIN (ENSBGRG00000024730) #33	DIS3L (ENSBGRG00000024760) #34	MEGF11 (ENSBGRG00000024819) #35	ENSBGRG00000024884 #36	DENND4A (ENSBGRG00000024953) #37	ENSBGRG00000025078	SLC24A1 (ENSBGRG00000025095)	INTS14 (ENSBGRG00000025180)
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	331											MAP3K10 (ENSBMUG00000015672)	ENSBMUG00000015645	ENSBMUG00000015632	ENSBMUG00000015620	PSMC4 (ENSBMUG00000015610)	ENSBMUG00000015590 #22	ENSBMUG00000015581	FBL (ENSBMUG00000015541)	ENSBMUG00000015530	ENSBMUG00000015486	ENSBMUG00000015465	EID2 (ENSBMUG00000015450)	DLL3 (ENSBMUG00000015428)	TIMM50 (ENSBMUG00000015398)	SUPT5H (ENSBMUG00000015326)	ENSBMUG00000015253	ENSBMUG00000015236	PLEKHG2 (ENSBMUG00000015178)	ZFP36 (ENSBMUG00000015152)	MED29 (ENSBMUG00000015140)	PAF1 (ENSBMUG00000015122)
Wild yak	MODERN SPECIES	552					ENSBMUG00000006692 #10	CORO2B (ENSBMUG00000006646) #12	ITGA11 (ENSBMUG00000006621) #13	FEM1B (ENSBMUG00000006589) #14	CLN6 (ENSBMUG00000006571) #15	CALML4 (ENSBMUG00000006499) #16	PIAS1 (ENSBMUG00000006486) #17	SKOR1 (ENSBMUG00000006456) #18	MAP2K5 (ENSBMUG00000006406) #19	ENSBMUG00000006346	IQCH (ENSBMUG00000006265) #21	AAGAB (ENSBMUG00000006202) #22	SMAD3 (ENSBMUG00000006115) #23	ENSBMUG00000006090 #26	LCTL (ENSBMUG00000006040) #28	ZWILCH (ENSBMUG00000006013) #29	ENSBMUG00000005950 #30	SNAPC5 (ENSBMUG00000005936) #31	MAP2K1 (ENSBMUG00000005924) #32	TIPIN (ENSBMUG00000005904) #33	DIS3L (ENSBMUG00000005883) #34
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b
Carnivora	ANCESTRAL SPECIES		ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Felidae	ANCESTRAL SPECIES	1	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Panthera	ANCESTRAL SPECIES	3	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Tiger	MODERN SPECIES	204	KIF23 (ENSPTIG00000009094)	PAQR5 (ENSPTIG00000008616)	GLCE (ENSPTIG00000008506)	NOX5 (ENSPTIG00000006417) #8	ENSPTIG00000006135 #10	CORO2B (ENSPTIG00000001549) #12	ITGA11 (ENSPTIG00000020061) #13	FEM1B (ENSPTIG00000019928) #14	CLN6 (ENSPTIG00000019082) #15	CALML4 (ENSPTIG00000018784) #16	PIAS1 (ENSPTIG00000017759) #17	ENSPTIG00000017654	MAP2K5 (ENSPTIG00000016073) #19	ENSPTIG00000015816	IQCH (ENSPTIG00000014096) #21	AAGAB (ENSPTIG00000013747) #22	SMAD3 (ENSPTIG00000012606) #23	LCTL (ENSPTIG00000012036) #28	ZWILCH (ENSPTIG00000011456) #29	ENSPTIG00000010784 #30	SNAPC5 (ENSPTIG00000010493) #31	MAP2K1 (ENSPTIG00000010070) #32	ENSPTIG00000009826	DIS3L (ENSPTIG00000009042) #34	MEGF11 (ENSPTIG00000001273) #35	RAB11A (ENSPTIG00000021637) #36	DENND4A (ENSPTIG00000018874) #37	SLC24A1 (ENSPTIG00000017335)	INTS14 (ENSPTIG00000014987)	HACD3 (ENSPTIG00000012698)	ENSPTIG00000012013
Panthera_a	ANCESTRAL SPECIES	15	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00910000146962	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
leopard	MODERN SPECIES	7	PAQR5 (ENSPPRG00000022419)	GLCE (ENSPPRG00000021675)	NOX5 (ENSPPRG00000020694) #8	ENSPPRG00000015452 #10	CORO2B (ENSPPRG00000015002) #12	ITGA11 (ENSPPRG00000014106) #13	FEM1B (ENSPPRG00000011995) #14	CLN6 (ENSPPRG00000011593) #15	CALML4 (ENSPPRG00000009014) #16	PIAS1 (ENSPPRG00000008695) #17	SKOR1 (ENSPPRG00000007828) #18	MAP2K5 (ENSPPRG00000006923) #19	ENSPPRG00000005987	C15orf61 (ENSPPRG00000005929) #20	IQCH (ENSPPRG00000005647) #21	AAGAB (ENSPPRG00000003564) #22	SMAD3 (ENSPPRG00000003306) #23	SMAD6 (ENSPPRG00000002502) #26	LCTL (ENSPPRG00000002315) #28	ZWILCH (ENSPPRG00000001390) #29	ENSPPRG00000000610 #30	SNAPC5 (ENSPPRG00000000465) #31	MAP2K1 (ENSPPRG00000022608) #32	TIPIN (ENSPPRG00000022554) #33	DIS3L (ENSPPRG00000019912) #34	MEGF11 (ENSPPRG00000014069) #35	RAB11A (ENSPPRG00000010471) #36	DENND4A (ENSPPRG00000009637) #37	SLC24A1 (ENSPPRG00000006682)	INTS14 (ENSPPRG00000003935)	HACD3 (ENSPPRG00000003107)
lion	MODERN SPECIES	6	PAQR5 (ENSPLOG00000004659)	GLCE (ENSPLOG00000004669)	NOX5 (ENSPLOG00000004683) #8	SPESP1 (ENSPLOG00000004706) #9	ENSPLOG00000004724 #10	CORO2B (ENSPLOG00000004744) #12	ITGA11 (ENSPLOG00000004793) #13	FEM1B (ENSPLOG00000004841) #14	CLN6 (ENSPLOG00000004871) #15	CALML4 (ENSPLOG00000004955) #16	PIAS1 (ENSPLOG00000004975) #17	SKOR1 (ENSPLOG00000005020) #18	MAP2K5 (ENSPLOG00000006228) #19	C15orf61 (ENSPLOG00000006817) #20	IQCH (ENSPLOG00000006897) #21	AAGAB (ENSPLOG00000007046) #22	SMAD3 (ENSPLOG00000007068) #23	ENSPLOG00000007093	SMAD6 (ENSPLOG00000007495) #26	LCTL (ENSPLOG00000007528) #28	ZWILCH (ENSPLOG00000007600) #29	RPL4 (ENSPLOG00000007707) #30	SNAPC5 (ENSPLOG00000007792) #31	MAP2K1 (ENSPLOG00000007836) #32	TIPIN (ENSPLOG00000007894) #33	DIS3L (ENSPLOG00000007929) #34	MEGF11 (ENSPLOG00000008100) #35	RAB11A (ENSPLOG00000008488) #36	DENND4A (ENSPLOG00000008717) #37	SLC24A1 (ENSPLOG00000009464)	INTS14 (ENSPLOG00000009755)
Cat	MODERN SPECIES	237	GLCE (ENSFCAG00000010280)	NOX5 (ENSFCAG00000001372) #8	SPESP1 (ENSFCAG00000048668) #9	ENSFCAG00000034954 #10	CORO2B (ENSFCAG00000006500) #12	ITGA11 (ENSFCAG00000006499) #13	FEM1B (ENSFCAG00000045964) #14	ENSFCAG00000049632	CLN6 (ENSFCAG00000025647) #15	CALML4 (ENSFCAG00000006497) #16	PIAS1 (ENSFCAG00000018490) #17	SKOR1 (ENSFCAG00000043709) #18	MAP2K5 (ENSFCAG00000004420) #19	CB3H15orf61 (ENSFCAG00000040546) #20	IQCH (ENSFCAG00000004419) #21	AAGAB (ENSFCAG00000004418) #22	SMAD3 (ENSFCAG00000027081) #23	SMAD6 (ENSFCAG00000012300) #26	LCTL (ENSFCAG00000012298) #28	ZWILCH (ENSFCAG00000012294) #29	RPL4 (ENSFCAG00000012293) #30	SNAPC5 (ENSFCAG00000012291) #31	MAP2K1 (ENSFCAG00000028389) #32	TIPIN (ENSFCAG00000035191) #33	DIS3L (ENSFCAG00000029869) #34	MEGF11 (ENSFCAG00000003091) #35	RAB11A (ENSFCAG00000030174) #36	DENND4A (ENSFCAG00000008694) #37	SLC24A1 (ENSFCAG00000008693)	INTS14 (ENSFCAG00000008692)	HACD3 (ENSFCAG00000008691)
Caniformia	ANCESTRAL SPECIES	12	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Ursidae	ANCESTRAL SPECIES	21	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B.p #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Ursus	ANCESTRAL SPECIES	37	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B.p #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
American black bear	MODERN SPECIES	83														C15orf61 (ENSUAMG00000020551) #20	IQCH (ENSUAMG00000020552) #21	AAGAB (ENSUAMG00000020553) #22	SMAD3 (ENSUAMG00000020554) #23	SMAD6 (ENSUAMG00000020556) #26
Polar bear	MODERN SPECIES	320	GLCE (ENSUMAG00000011629)	NOX5 (ENSUMAG00000011648) #8	SPESP1 (ENSUMAG00000011718) #9	ENSUMAG00000011724	ENSUMAG00000011740 #10	CORO2B (ENSUMAG00000011755) #12	ITGA11 (ENSUMAG00000011792) #13	FEM1B (ENSUMAG00000011958) #14	ENSUMAG00000011962 #15	CALML4 (ENSUMAG00000011979) #16	PIAS1 (ENSUMAG00000011980) #17	ENSUMAG00000011983	MAP2K5 (ENSUMAG00000011992) #19	C15orf61 (ENSUMAG00000012016) #20	IQCH (ENSUMAG00000012020) #21	AAGAB (ENSUMAG00000012048) #22	ENSUMAG00000012057 #23	LCTL (ENSUMAG00000012072) #28	ZWILCH (ENSUMAG00000012145) #29	RPL4 (ENSUMAG00000012178) #30	MAP2K1 (ENSUMAG00000012208) #32	TIPIN (ENSUMAG00000012215) #33	DIS3L (ENSUMAG00000012227) #34	MEGF11 (ENSUMAG00000012242) #35	RAB11A (ENSUMAG00000012273) #36	DENND4A (ENSUMAG00000012290) #37	SLC24A1 (ENSUMAG00000012325)	INTS14 (ENSUMAG00000012368)	HACD3 (ENSUMAG00000012379)	DPP8 (ENSUMAG00000012441)	ENSUMAG00000012451
Giant Panda	MODERN SPECIES	15	GLCE (ENSAMEG00000030318)	ENSAMEG00000020008	NOX5 (ENSAMEG00000014136) #8	SPESP1 (ENSAMEG00000014134) #9	ENSAMEG00000014117 #10	CORO2B (ENSAMEG00000014093) #12	ITGA11 (ENSAMEG00000014076) #13	FEM1B (ENSAMEG00000014073) #14	CLN6 (ENSAMEG00000014058) #15	CALML4 (ENSAMEG00000014054) #16	PIAS1 (ENSAMEG00000014025) #17	SKOR1 (ENSAMEG00000004996) #18	MAP2K5 (ENSAMEG00000005013) #19	C15orf61 (ENSAMEG00000029099) #20	IQCH (ENSAMEG00000005044) #21	AAGAB (ENSAMEG00000028433) #22	SMAD3 (ENSAMEG00000003318) #23	SMAD6 (ENSAMEG00000029979) #26	LCTL (ENSAMEG00000003300) #28	ZWILCH (ENSAMEG00000003251) #29	ENSAMEG00000029170 #30	SNAPC5 (ENSAMEG00000003249) #31	MAP2K1 (ENSAMEG00000003218) #32	TIPIN (ENSAMEG00000027725) #33	DIS3L (ENSAMEG00000003166) #34	MEGF11 (ENSAMEG00000003131) #35	RAB11A (ENSAMEG00000003119) #36	DENND4A (ENSAMEG00000003046) #37	SLC24A1 (ENSAMEG00000003029)	INTS14 (ENSAMEG00000003002)	HACD3 (ENSAMEG00000002983)
Mustelinae	ANCESTRAL SPECIES	66	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Ferret	MODERN SPECIES	228	GLCE (ENSMPUG00000000209)	NOX5 (ENSMPUG00000000210) #8	SPESP1 (ENSMPUG00000000214) #9	ENSMPUG00000000216	ENSMPUG00000000218 #10	CORO2B (ENSMPUG00000000220) #12	ITGA11 (ENSMPUG00000000221) #13	FEM1B (ENSMPUG00000000266) #14	CLN6 (ENSMPUG00000000267) #15	CALML4 (ENSMPUG00000000270) #16	PIAS1 (ENSMPUG00000000281) #17	SKOR1 (ENSMPUG00000000283) #18	MAP2K5 (ENSMPUG00000000285) #19	C15orf61 (ENSMPUG00000000287) #20	IQCH (ENSMPUG00000000289) #21	AAGAB (ENSMPUG00000000292) #22	SMAD3 (ENSMPUG00000000304) #23	SMAD6 (ENSMPUG00000000307) #26	ENSMPUG00000000309	LCTL (ENSMPUG00000000312) #28	ZWILCH (ENSMPUG00000000333) #29	ENSMPUG00000000337 #30	SNAPC5 (ENSMPUG00000000356) #31	MAP2K1 (ENSMPUG00000000363) #32	TIPIN (ENSMPUG00000000365) #33	DIS3L (ENSMPUG00000000378) #34	MEGF11 (ENSMPUG00000000383) #35	RAB11A (ENSMPUG00000000387) #36	DENND4A (ENSMPUG00000000388) #37	SLC24A1 (ENSMPUG00000000468)	INTS14 (ENSMPUG00000000472)
American mink	MODERN SPECIES	46	GLCE (ENSNVIG00000015508)	NOX5 (ENSNVIG00000015522) #8	SPESP1 (ENSNVIG00000015552) #9	ENSNVIG00000015562	ENSNVIG00000015596 #10	CORO2B (ENSNVIG00000015623) #12	ENSNVIG00000015659	ITGA11 (ENSNVIG00000015665) #13	FEM1B (ENSNVIG00000015730) #14	CLN6 (ENSNVIG00000015741) #15	CALML4 (ENSNVIG00000015844) #16	PIAS1 (ENSNVIG00000015868) #17	SKOR1 (ENSNVIG00000015923) #18	MP2K5 (ENSNVIG00000015958) #19	IQCH (ENSNVIG00000016136) #21	AAGAB (ENSNVIG00000016212) #22	SMAD3 (ENSNVIG00000016249) #23	SMAD6 (ENSNVIG00000016271) #26	LCTL (ENSNVIG00000016282) #28	ZWILC (ENSNVIG00000016326) #29	RPL4 (ENSNVIG00000016412) #30	SNAPC5 (ENSNVIG00000016483) #31	MAP2K1 (ENSNVIG00000016498) #32	TIPIN (ENSNVIG00000016513) #33	DIS3L (ENSNVIG00000016535) #34	MEGF11 (ENSNVIG00000016583) #35	RAB11A (ENSNVIG00000016821) #36	DENND4A (ENSNVIG00000016862) #37	SLC24A1 (ENSNVIG00000017089)	CO044 (ENSNVIG00000017199)	HACD3 (ENSNVIG00000017259)
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES	15	ENSGT00940000163568	ENSGT00940000153533.a.m.b.b	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218.m #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00950000185603	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00940000163568	ENSGT00940000153533.a.m.b.b	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218.m #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00950000185603	ENSGT00390000013696 #29	ENSGT00390000018145.lc.a #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Dingo	MODERN SPECIES	205	ENSCAFG00020007559	NOX5 (ENSCAFG00020007565) #8	SPESP1 (ENSCAFG00020007667) #9	ENSCAFG00020007670 #10	ENSCAFG00020007674	CORO2B (ENSCAFG00020007691) #12	ITGA11 (ENSCAFG00020007730) #13	FEM1B (ENSCAFG00020008006) #14	CLN6 (ENSCAFG00020008011) #15	CALML4 (ENSCAFG00020008020) #16	PIAS1 (ENSCAFG00020008026) #17	SKOR1 (ENSCAFG00020008049) #18	MAP2K5 (ENSCAFG00020008071) #19	C15orf61 (ENSCAFG00020008094) #20	IQCH (ENSCAFG00020008118) #21	ENSCAFG00020008170 #22	SMAD3 (ENSCAFG00020008177) #23	SMAD6 (ENSCAFG00020008193) #26	LCTL (ENSCAFG00020008195) #28	ZWILCH (ENSCAFG00020008215) #29	ENSCAFG00020008355 #30	SNAPC5 (ENSCAFG00020008387) #31	MAP2K1 (ENSCAFG00020008392) #32	TIPIN (ENSCAFG00020008398) #33	DIS3L (ENSCAFG00020008413) #34	MEGF11 (ENSCAFG00020008443) #35	RAB11A (ENSCAFG00020008478) #36	DENND4A (ENSCAFG00020008501) #37	SLC24A1 (ENSCAFG00020008562)	INTS14 (ENSCAFG00020008669)	HACD3 (ENSCAFG00020008678)
Dog	MODERN SPECIES	23	GLCE (ENSCAFG00845020635)	ENSCAFG00845020567	NOX5 (ENSCAFG00845020023) #8	SPESP1 (ENSCAFG00845019873) #9	ANP32A (ENSCAFG00845019800) #10	CORO2B (ENSCAFG00845019590) #12	ITGA11 (ENSCAFG00845019410) #13	FEM1B (ENSCAFG00845019340) #14	CLN6 (ENSCAFG00845018935) #15	CALML4 (ENSCAFG00845018790) #16	PIAS1 (ENSCAFG00845018319) #17	SKOR1 (ENSCAFG00845017976) #18	MAP2K5 (ENSCAFG00845017514) #19	C15orf61 (ENSCAFG00845017380) #20	IQCH (ENSCAFG00845017088) #21	AAGAB (ENSCAFG00845016886) #22	SMAD3 (ENSCAFG00845016639) #23	SMAD6 (ENSCAFG00845016415) #26	LCTL (ENSCAFG00845016168) #28	ENSCAFG00845016122	ZWILCH (ENSCAFG00845015845) #29	RPL4 (ENSCAFG00845015609) #30	SNAPC5 (ENSCAFG00845015512) #31	MAP2K1 (ENSCAFG00845015371) #32	ENSCAFG00845015268	TIPIN (ENSCAFG00845015229) #33	DIS3L (ENSCAFG00845015076) #34	ENSCAFG00845014976 #35	RAB11A (ENSCAFG00845027320) #36	DENND4A (ENSCAFG00845026536) #37	SLC24A1 (ENSCAFG00845026323)
Red fox	MODERN SPECIES		GLCE (ENSVVUG00000014760)	ENSVVUG00000014756	NOX5 (ENSVVUG00000014734) #8	SPESP1 (ENSVVUG00000014730) #9	ANP32A (ENSVVUG00000014726) #10	CORO2B (ENSVVUG00000014724) #12	ITGA11 (ENSVVUG00000014719) #13	FEM1B (ENSVVUG00000014718) #14	CLN6 (ENSVVUG00000014717) #15	ENSVVUG00000014716 #16	PIAS1 (ENSVVUG00000014713) #17	ENSVVUG00000014708 #18	MAP2K5 (ENSVVUG00000014703) #19	C15orf61 (ENSVVUG00000014693) #20	IQCH (ENSVVUG00000014665) #21	AAGAB (ENSVVUG00000014658) #22	SMAD3 (ENSVVUG00000014647) #23	SMAD6 (ENSVVUG00000014625) #26	ENSVVUG00000014615	ENSVVUG00000014612	LCTL (ENSVVUG00000014585) #28	ENSVVUG00000014578	ZWILCH (ENSVVUG00000014559) #29	ENSVVUG00000014531 #30	SNAPC5 (ENSVVUG00000014527) #31	MAP2K1 (ENSVVUG00000014514) #32	TIPIN (ENSVVUG00000014501) #33	DIS3L (ENSVVUG00000014492) #34	MEGF11 (ENSVVUG00000014448) #35	RAB11A (ENSVVUG00000014435) #36	DENND4A (ENSVVUG00000014392) #37
Canidae	ANCESTRAL SPECIES																	ENSGT00390000007218.n #22
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00390000007218.n #22
Dingo	MODERN SPECIES	271	TUBB6 (ENSCAFG00020023964)	CIDEA (ENSCAFG00020023962)	ENSCAFG00020023958	IMPA2 (ENSCAFG00020023957)	MPPE1 (ENSCAFG00020023956)	GNAL (ENSCAFG00020023942)	ENSCAFG00020023932	PIEZO2 (ENSCAFG00020023811)	NAPG (ENSCAFG00020023797)	APCDD1 (ENSCAFG00020023796)	ENSCAFG00020023792	VAPA (ENSCAFG00020023791)	ENSCAFG00020023790	ENSCAFG00020023787	ENSCAFG00020023786	ENSCAFG00020023785 #22	PPP4R1 (ENSCAFG00020023782)	RALBP1 (ENSCAFG00020023780)	ENSCAFG00020023779	TWSG1 (ENSCAFG00020023775)	ENSCAFG00020023774	ENSCAFG00020023769	NDUFV2 (ENSCAFG00020023766)	MTCL1 (ENSCAFG00020023727)	RAB12 (ENSCAFG00020023721)	PTPRM (ENSCAFG00020022563)	LRRC30 (ENSCAFG00020022537)	ENSCAFG00020022536	ENSCAFG00020022535	ENSCAFG00020022531	ENSCAFG00020022530
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914.db.a #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Equus	ANCESTRAL SPECIES	4	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914.eb #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Donkey	MODERN SPECIES	11	ENSEASG00005025046	NOX5 (ENSEASG00005006228) #8	SPESP1 (ENSEASG00005028304) #9	ENSEASG00005006243 #10	CORO2B (ENSEASG00005006245) #12	ITGA11 (ENSEASG00005006251) #13	FEM1B (ENSEASG00005006255) #14	CLN6 (ENSEASG00005034200) #15	CALML4 (ENSEASG00005033729) #16	PIAS1 (ENSEASG00005006262) #17	ENSEASG00005006267	SKOR1 (ENSEASG00005006277) #18	MAP2K5 (ENSEASG00005006290) #19	ENSEASG00005006297 #20	IQCH (ENSEASG00005006301) #21	AAGAB (ENSEASG00005006311) #22	SMAD3 (ENSEASG00005006315) #23	ENSEASG00005025450 #26	LCTL (ENSEASG00005006319) #28	ZWILCH (ENSEASG00005006339) #29	RPL4 (ENSEASG00005006373) #30	SNAPC5 (ENSEASG00005006384) #31	MAP2K1 (ENSEASG00005006387) #32	TIPIN (ENSEASG00005006396) #33	DIS3L (ENSEASG00005006407) #34	MEGF11 (ENSEASG00005006429) #35	RAB11A (ENSEASG00005006431) #36	DENND4A (ENSEASG00005006437) #37	SLC24A1 (ENSEASG00005006448)	INTS14 (ENSEASG00005006454)	HACD3 (ENSEASG00005006456)
Horse	MODERN SPECIES		GLCE (ENSECAG00000014998)	NOX5 (ENSECAG00000018409) #8	SPESP1 (ENSECAG00000002377) #9	ENSECAG00000002541 #10	CORO2B (ENSECAG00000014020) #12	ITGA11 (ENSECAG00000023104) #13	FEM1B (ENSECAG00000015587)	CLN6 (ENSECAG00000016991) #15	CALML4 (ENSECAG00000021844) #16	PIAS1 (ENSECAG00000007993) #17	ENSECAG00000005747	SKOR1 (ENSECAG00000036584) #18	MAP2K5 (ENSECAG00000022411) #19	ENSECAG00000029823	IQCH (ENSECAG00000007674) #21	AAGAB (ENSECAG00000013142) #22	ENSECAG00000047849 #21	SMAD3 (ENSECAG00000020259) #23	SMAD6 (ENSECAG00000013706) #26	LCTL (ENSECAG00000014254) #28	ZWILCH (ENSECAG00000018367) #29	RPL4 (ENSECAG00000023179) #30	MAP2K1 (ENSECAG00000010640) #32	TIPIN (ENSECAG00000004590) #33	DIS3L (ENSECAG00000007302) #34	MEGF11 (ENSECAG00000000706) #35	RAB11A (ENSECAG00000023865) #36	DENND4A (ENSECAG00000024306) #37	SLC24A1 (ENSECAG00000013327)	INTS14 (ENSECAG00000018884)	HACD3 (ENSECAG00000023082)
Chiroptera	ANCESTRAL SPECIES	17	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465.h #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914.db.a #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Microchiroptera	ANCESTRAL SPECIES	20	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465.h #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914.db.a #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Greater horseshoe bat	MODERN SPECIES	24	PAQR5 (ENSRFEG00010003129)	GLCE (ENSRFEG00010003151)	ENSRFEG00010003165	SPESP1 (ENSRFEG00010003175) #9	ENSRFEG00010003201 #10	CORO2B (ENSRFEG00010003225) #12	ITGA11 (ENSRFEG00010003262) #13	FEM1B (ENSRFEG00010003282) #14	CLN6 (ENSRFEG00010003356) #15	ENSRFEG00010003398 #16	ENSRFEG00010003431 #17	ENSRFEG00010003474	SKOR1 (ENSRFEG00010003500) #18	MAP2K5 (ENSRFEG00010003624) #19	IQCH (ENSRFEG00010003782) #21	AAGAB (ENSRFEG00010003850) #22	SMAD3 (ENSRFEG00010003872) #23	SMAD6 (ENSRFEG00010003887) #26	ENSRFEG00010003900 #27	LCTL (ENSRFEG00010003917) #28	ZWILCH (ENSRFEG00010003952) #29	ENSRFEG00010003980 #30	SNAPC5 (ENSRFEG00010003999) #31	MAP2K1 (ENSRFEG00010004010) #32	TIPIN (ENSRFEG00010004026) #33	DIS3L (ENSRFEG00010004058) #34	MEGF11 (ENSRFEG00010004126) #35	ENSRFEG00010004168 #36	DENND4A (ENSRFEG00010004242) #37	SLC24A1 (ENSRFEG00010004368)	INTS14 (ENSRFEG00010004454)
Microbat	MODERN SPECIES	1275								ITGA11 (ENSMLUG00000008993) #13	FEM1B (ENSMLUG00000008987) #14	CLN6 (ENSMLUG00000008964) #15	CALML4 (ENSMLUG00000010350) #16	PIAS1 (ENSMLUG00000010321) #17	MAP2K5 (ENSMLUG00000002205) #19	C15orf61 (ENSMLUG00000029534) #20	IQCH (ENSMLUG00000002192) #21	AAGAB (ENSMLUG00000002191) #22	SMAD3 (ENSMLUG00000002185) #23
Megabat	MODERN SPECIES	3284															IQCH (ENSPVAG00000002628) #21	AAGAB (ENSPVAG00000002627) #22	SMAD3 (ENSPVAG00000002626) #23
Atlantogenata	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00390000005362 #9	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Afrotheria	ANCESTRAL SPECIES	58							ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Afrotheria_a	ANCESTRAL SPECIES	56							ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Elephant	MODERN SPECIES	466						ITGA11 (ENSLAFG00000018505) #13	FEM1B (ENSLAFG00000013998) #14	CLN6 (ENSLAFG00000029055) #15	CALML4 (ENSLAFG00000021943) #16	PIAS1 (ENSLAFG00000018150) #17	ENSLAFG00000029244	SKOR1 (ENSLAFG00000018189) #18	MAP2K5 (ENSLAFG00000001427) #19	C15orf61 (ENSLAFG00000000737) #20	IQCH (ENSLAFG00000011381) #21	AAGAB (ENSLAFG00000022590) #22	SMAD3 (ENSLAFG00000021903) #23	SMAD6 (ENSLAFG00000013285) #26	LCTL (ENSLAFG00000012306) #28	RPL4 (ENSLAFG00000006494) #30	SNAPC5 (ENSLAFG00000006491) #31	MAP2K1 (ENSLAFG00000006487) #32	TIPIN (ENSLAFG00000026016) #33	DIS3L (ENSLAFG00000006866) #34	MEGF11 (ENSLAFG00000011424) #35	RAB11A (ENSLAFG00000011418) #36	DENND4A (ENSLAFG00000010247) #37	INTS14 (ENSLAFG00000010235)	HACD3 (ENSLAFG00000010226)	DPP8 (ENSLAFG00000013000)	IGDCC4 (ENSLAFG00000022955)
Hyrax	MODERN SPECIES	5063															IQCH (ENSPCAG00000008236) #21	AAGAB (ENSPCAG00000008177) #22	SMAD3 (ENSPCAG00000008103) #23
Tenrec	MODERN SPECIES	5988																ENSETEG00000003361 #22	SMAD3 (ENSETEG00000003356) #23
Xenarthra	ANCESTRAL SPECIES	973													ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908.i #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23
Sloth	MODERN SPECIES	549																ENSCHOG00000004305 #22
Armadillo	MODERN SPECIES	4622															ENSDNOG00000031612 #21	AAGAB (ENSDNOG00000025858) #22	SMAD3 (ENSDNOG00000044090) #23
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Diprotodontia	ANCESTRAL SPECIES		ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Common wonbat	MODERN SPECIES	581	KIF23 (ENSVURG00010018250)	GLCE (ENSVURG00010018222)	NOX5 (ENSVURG00010018209) #8	ENSVURG00010018193 #10	CORO2B (ENSVURG00010018179) #12	ITGA11 (ENSVURG00010017821) #13	FEM1B (ENSVURG00010017788) #14	CLN6 (ENSVURG00010017776) #15	CALML4 (ENSVURG00010017772) #16	PIAS1 (ENSVURG00010017756) #17	SKOR1 (ENSVURG00010017727) #18	MAP2K5 (ENSVURG00010017619) #19	C15orf61 (ENSVURG00010017585) #20	ENSVURG00010017577	IQCH (ENSVURG00010017554) #21	AAGAB (ENSVURG00010017532) #22	SMAD3 (ENSVURG00010017513) #23	SMAD6 (ENSVURG00010017499) #26	LCTL (ENSVURG00010017479) #28	ZWILCH (ENSVURG00010017403) #29	RPL4 (ENSVURG00010017371) #30	SNAPC5 (ENSVURG00010017361) #31	MAP2K1 (ENSVURG00010017352) #32	TIPIN (ENSVURG00010017324) #33	DIS3L (ENSVURG00010017304) #34	MEGF11 (ENSVURG00010017205) #35	RAB11A (ENSVURG00010017156) #36	DENND4A (ENSVURG00010017069) #37	ENSVURG00010017031	INTS14 (ENSVURG00010016912)	HACD3 (ENSVURG00010016877)
koala	MODERN SPECIES		KIF23 (ENSPCIG00000013844)	PAQR5 (ENSPCIG00000013860)	GLCE (ENSPCIG00000013869)	NOX5 (ENSPCIG00000013880) #8	ENSPCIG00000023204 #10	CORO2B (ENSPCIG00000023206) #12	ITGA11 (ENSPCIG00000023209) #13	ENSPCIG00000023218	CLN6 (ENSPCIG00000023237) #15	CALML4 (ENSPCIG00000023241) #16	PIAS1 (ENSPCIG00000023245) #17	SKOR1 (ENSPCIG00000023240) #18	MAP2K5 (ENSPCIG00000023233) #19	C15orf61 (ENSPCIG00000023229) #20	IQCH (ENSPCIG00000023221) #21	AAGAB (ENSPCIG00000014065) #22	SMAD3 (ENSPCIG00000014066) #23	SMAD6 (ENSPCIG00000006792) #26	LCTL (ENSPCIG00000006796) #28	ZWILCH (ENSPCIG00000006798) #29	RPL4 (ENSPCIG00000006799) #30	ENSPCIG00000006812 #31	MAP2K1 (ENSPCIG00000006816) #32	TIPIN (ENSPCIG00000006818) #33	DIS3L (ENSPCIG00000006827) #34	MEGF11 (ENSPCIG00000006843) #35	RAB11A (ENSPCIG00000006878) #36	DENND4A (ENSPCIG00000006919) #37	ENSPCIG00000008854	INTS14 (ENSPCIG00000008852)	HACD3 (ENSPCIG00000008851)
Wallaby	MODERN SPECIES	7451															ENSMEUG00000016685 #21	ENSMEUG00000016678 #22	SMAD3 (ENSMEUG00000016668) #23
Tasmanian devil	MODERN SPECIES	1	KIF23 (ENSSHAG00000014701)	ENSSHAG00000014510	GLCE (ENSSHAG00000023440)	NOX5 (ENSSHAG00000012412) #8	ENSSHAG00000010906 #10	CORO2B (ENSSHAG00000009104) #12	ITGA11 (ENSSHAG00000005006) #13	FEM1B (ENSSHAG00000030104) #14	ENSSHAG00000003272 #15	CALML4 (ENSSHAG00000028912) #16	PIAS1 (ENSSHAG00000022295) #17	SKOR1 (ENSSHAG00000027578) #18	MAP2K5 (ENSSHAG00000014400) #19	C15orf61 (ENSSHAG00000031222) #20	IQCH (ENSSHAG00000012985) #21	AAGAB (ENSSHAG00000012729) #22	SMAD3 (ENSSHAG00000023904) #23	SMAD6 (ENSSHAG00000007962) #26	LCTL (ENSSHAG00000003461) #28	ZWILCH (ENSSHAG00000002622) #29	RPL4 (ENSSHAG00000002421) #30	SNAPC5 (ENSSHAG00000025154) #31	MAP2K1 (ENSSHAG00000029460) #32	TIPIN (ENSSHAG00000011237) #33	DIS3L (ENSSHAG00000010970) #34	MEGF11 (ENSSHAG00000006869) #35	RAB11A (ENSSHAG00000006622) #36	DENND4A (ENSSHAG00000002367) #37	SLC24A1 (ENSSHAG00000013623)	INTS14 (ENSSHAG00000013462)	HACD3 (ENSSHAG00000013349)
Opossum	DUPLICATION
Opossum	MODERN SPECIES	3	ENSMODG00000027898	BCL3 (ENSMODG00000020862)	CEACAM16 (ENSMODG00000020863)	ENSMODG00000020864	ENSMODG00000020865	ENSMODG00000020867	ENSMODG00000045880	ENSMODG00000023856	ENSMODG00000023858	ENSMODG00000029058	ENSMODG00000024614	ENSMODG00000039023	ENSMODG00000045440	ENSMODG00000039660	ENSMODG00000010023	ENSMODG00000036598 #22	ENSMODG00000009913	ENSMODG00000009946	ENSMODG00000028235	ENSMODG00000009963	ENSMODG00000039526	ENSMODG00000028582	ENSMODG00000023862	ENSMODG00000040593	ENSMODG00000040813	ENSMODG00000042050	ENSMODG00000027441	ENSMODG00000027776	ENSMODG00000023866	ENSMODG00000049794	ENSMODG00000023869
Opossum	MODERN SPECIES		ENSMODG00000038950	GLCE (ENSMODG00000042930)	NOX5 (ENSMODG00000009308) #8	ENSMODG00000009359 #10	CORO2B (ENSMODG00000009371) #12	ENSMODG00000040904	ITGA11 (ENSMODG00000009413) #13	FEM1B (ENSMODG00000051021) #14	CLN6 (ENSMODG00000009425) #15	CALML4 (ENSMODG00000009430) #16	PIAS1 (ENSMODG00000009467) #17	SKOR1 (ENSMODG00000024583) #18	MAP2K5 (ENSMODG00000009527) #19	C15orf61 (ENSMODG00000036723) #20	ENSMODG00000009566 #21	ENSMODG00000009585 #22	SMAD3 (ENSMODG00000038564) #23	SMAD6 (ENSMODG00000009620) #26	LCTL (ENSMODG00000009632) #28	ZWILCH (ENSMODG00000009648) #29	RPL4 (ENSMODG00000009657) #30	ENSMODG00000025470 #31	MAP2K1 (ENSMODG00000009715) #32	ENSMODG00000039883	TIPIN (ENSMODG00000009724) #33	DIS3L (ENSMODG00000009760) #34	MEGF11 (ENSMODG00000009795) #35	RAB11A (ENSMODG00000009810) #36	DENND4A (ENSMODG00000009838) #37	SLC24A1 (ENSMODG00000009861)	INTS14 (ENSMODG00000009876)
Platypus	MODERN SPECIES	16	PAQR5 (ENSOANG00000013535)	GLCE (ENSOANG00000040386)	NOX5 (ENSOANG00000012494) #8	ENSOANG00000013537 #9	ENSOANG00000048109 #10	CORO2B (ENSOANG00000013538) #12	ITGA11 (ENSOANG00000013543) #13	ENSOANG00000013544	CLN6 (ENSOANG00000044196) #15	CALML4 (ENSOANG00000036767) #16	PIAS1 (ENSOANG00000013547) #17	SKOR1 (ENSOANG00000041839) #18	MAP2K5 (ENSOANG00000013555) #19	C15orf61 (ENSOANG00000042403) #20	ENSOANG00000013556 #21	AAGAB (ENSOANG00000046695) #22	SMAD3 (ENSOANG00000037003) #23	SMAD6 (ENSOANG00000042174) #26	LCTL (ENSOANG00000004554) #28	ZWILCH (ENSOANG00000004555) #29	RPL4 (ENSOANG00000048650) #30	SNAPC5 (ENSOANG00000039654) #31	MAP2K1 (ENSOANG00000009750) #32	TIPIN (ENSOANG00000048848) #33	DIS3L (ENSOANG00000009753) #34	MEGF11 (ENSOANG00000037204) #35	RAB11A (ENSOANG00000038794) #36	DENND4A (ENSOANG00000044994) #37	ENSOANG00000043682	INTS14 (ENSOANG00000001669)	ENSOANG00000046972
Sauria	ANCESTRAL SPECIES	10	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00950000186456	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Archelosauria	ANCESTRAL SPECIES	13	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00950000186456	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Archosauria	ANCESTRAL SPECIES	9	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Aves	ANCESTRAL SPECIES	14	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Neognathae	ANCESTRAL SPECIES	11	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Galloanserae	ANCESTRAL SPECIES	10	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Anatidae	ANCESTRAL SPECIES	36	ENSGT01030000234519.e.b	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689.c #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Pink-footed goose	MODERN SPECIES	52	KIF23 (ENSABRG00000007848)	PAQR5 (ENSABRG00000007901)	GLCE (ENSABRG00000007906)	NOX5 (ENSABRG00000007909) #8	ENSABRG00000007920	ENSABRG00000007925 #10	CORO2B (ENSABRG00000007931) #12	ITGA11 (ENSABRG00000007970) #13	ENSABRG00000008298	CLN6 (ENSABRG00000008307) #15	CALML4 (ENSABRG00000008336) #16	PIAS1 (ENSABRG00000008359) #17	MAP2K5 (ENSABRG00000008420) #19	C15orf61 (ENSABRG00000008455) #20	IQCH (ENSABRG00000008459) #21	AAGAB (ENSABRG00000008468) #22	SMAD3 (ENSABRG00000008486) #23	SMAD6 (ENSABRG00000008516) #26	LCTL (ENSABRG00000008534) #28	ZWILCH (ENSABRG00000008567) #29	RPL4 (ENSABRG00000008586) #30	SNAPC5 (ENSABRG00000008617) #31	MAP2K1 (ENSABRG00000008635) #32	ENSABRG00000008668	TIPIN (ENSABRG00000008669) #33	DIS3L (ENSABRG00000008682) #34	MEGF11 (ENSABRG00000008723) #35	RAB11A (ENSABRG00000008748) #36	DENND4A (ENSABRG00000008768) #37	SLC24A1 (ENSABRG00000008827)	INTS14 (ENSABRG00000008861)
Duck	MODERN SPECIES	2	ENSAPLG00000025612	ENSAPLG00000018841	GLCE (ENSAPLG00000005999)	NOX5 (ENSAPLG00000005589) #8	ENSAPLG00000016831 #10	CORO2B (ENSAPLG00000027282) #12	ENSAPLG00000029500 #12	ITGA11 (ENSAPLG00000003663) #13	FEM1B (ENSAPLG00000003592) #14	CLN6 (ENSAPLG00000003181) #15	CALML4 (ENSAPLG00000003092) #16	ENSAPLG00000002495 #17	MAP2K5 (ENSAPLG00000007755) #19	C15orf61 (ENSAPLG00000001076) #20	IQCH (ENSAPLG00000007592) #21	AAGAB (ENSAPLG00000007346) #22	SMAD3 (ENSAPLG00000007006) #23	SMAD6 (ENSAPLG00000000997) #26	ENSAPLG00000028241 #28	ZWILCH (ENSAPLG00000000968) #29	RPL4 (ENSAPLG00000015853) #30	SNAPC5 (ENSAPLG00000001863) #31	MAP2K1 (ENSAPLG00000015480) #32	TIPIN (ENSAPLG00000015332) #33	DIS3L (ENSAPLG00000015294) #34	MEGF11 (ENSAPLG00000015095) #35	RAB11A (ENSAPLG00000014962) #36	DENND4A (ENSAPLG00000014243) #37	SLC24A1 (ENSAPLG00000014168)	INTS14 (ENSAPLG00000014064)	HACD3 (ENSAPLG00000013863)
Phasianidae	ANCESTRAL SPECIES	11	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00940000160717
Japanese quail	MODERN SPECIES	1	ENSCJPG00005021053	KIF23 (ENSCJPG00005021004)	PAQR5 (ENSCJPG00005021003)	GLCE (ENSCJPG00005021002)	ENSCJPG00005021000 #10	CORO2B (ENSCJPG00005020999) #12	ITGA11 (ENSCJPG00005020998) #13	FEM1B (ENSCJPG00005020997) #14	CLN6 (ENSCJPG00005020996) #15	CALML4 (ENSCJPG00005020995) #16	PIAS1 (ENSCJPG00005020993) #17	SKOR1 (ENSCJPG00005020991) #18	MAP2K5 (ENSCJPG00005020975) #19	C15orf61 (ENSCJPG00005020973) #20	IQCH (ENSCJPG00005020972) #21	AAGAB (ENSCJPG00005020971) #22	SMAD3 (ENSCJPG00005020970) #23	SMAD6 (ENSCJPG00005020969) #26	ZWILCH (ENSCJPG00005020968) #29	RPL4 (ENSCJPG00005020961) #30	SNAPC5 (ENSCJPG00005020958) #31	MAP2K1 (ENSCJPG00005020944) #32	TIPIN (ENSCJPG00005020942) #33	DIS3L (ENSCJPG00005020941) #34	MEGF11 (ENSCJPG00005020910) #35	RAB11A (ENSCJPG00005020908) #36	DENND4A (ENSCJPG00005020807) #37	SLC24A1 (ENSCJPG00005020804)	INTS14 (ENSCJPG00005020803)	HACD3 (ENSCJPG00005020802)	DPP8 (ENSCJPG00005020764)
Phasianidae_b	ANCESTRAL SPECIES	11	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00940000160717
Turkey	MODERN SPECIES	3	TLE3 (ENSMGAG00000010249)	KIF23 (ENSMGAG00000010217)	PAQR5 (ENSMGAG00000010133)	GLCE (ENSMGAG00000010210)	NOX5 (ENSMGAG00000010183) #8	ENSMGAG00000010171 #10	CORO2B (ENSMGAG00000010149) #12	ITGA11 (ENSMGAG00000010073) #13	ENSMGAG00000010069	CLN6 (ENSMGAG00000010054) #15	CALML4 (ENSMGAG00000010048) #16	PIAS1 (ENSMGAG00000009994) #17	MAP2K5 (ENSMGAG00000009937) #19	C15orf61 (ENSMGAG00000022676) #20	IQCH (ENSMGAG00000009928) #21	AAGAB (ENSMGAG00000009906) #22	SMAD3 (ENSMGAG00000009879) #23	SMAD6 (ENSMGAG00000009875) #26	ZWILCH (ENSMGAG00000009851) #29	RPL4 (ENSMGAG00000009822) #30	ENSMGAG00000019153	MAP2K1 (ENSMGAG00000009864) #32	TIPIN (ENSMGAG00000009857) #33	DIS3L (ENSMGAG00000009805) #34	MEGF11 (ENSMGAG00000009776) #35	RAB11A (ENSMGAG00000009797) #36	DENND4A (ENSMGAG00000009728) #37	SLC24A1 (ENSMGAG00000009715)	INTS14 (ENSMGAG00000009693)	HACD3 (ENSMGAG00000009683)	DPP8 (ENSMGAG00000009649)
Chicken	MODERN SPECIES	1	PAQR5 (ENSGALG00010016459)	GLCE (ENSGALG00010016452)	NOX5 (ENSGALG00010017588) #8	ANP32A (ENSGALG00010017558) #10	CORO2B (ENSGALG00010017482) #12	ITGA11 (ENSGALG00010017403) #13	ENSGALG00010017382	FEM1B (ENSGALG00010017354) #14	CLN6 (ENSGALG00010017327) #15	CALML4 (ENSGALG00010017314) #16	PIAS1 (ENSGALG00010017264) #17	SKOR1 (ENSGALG00010017146) #18	MAP2K5 (ENSGALG00010017039) #19	C15orf61 (ENSGALG00010016968) #20	IQCH (ENSGALG00010018192) #21	AAGAB (ENSGALG00010018150) #22	SMAD3 (ENSGALG00010018099) #23	SMAD6 (ENSGALG00010018054) #26	ZWILCH (ENSGALG00010018042) #29	RPL4 (ENSGALG00010018036) #30	SNAPC5 (ENSGALG00010018020) #31	MAP2K1 (ENSGALG00010018000) #32	TIPIN (ENSGALG00010017956) #33	DIS3L (ENSGALG00010017941) #34	MEGF11 (ENSGALG00010017904) #35	RAB11A (ENSGALG00010017870) #36	DENND4A (ENSGALG00010017830) #37	SLC24A1 (ENSGALG00010017819)	VWA9 (ENSGALG00010017815)	HACD3 (ENSGALG00010017811)	DPP8 (ENSGALG00010017805)
Neognathae_b	ANCESTRAL SPECIES	13	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Passeriformes	ANCESTRAL SPECIES	12	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Great tit	MODERN SPECIES	1	ENSPMJG00000010244	TLE3 (ENSPMJG00000010074)	KIF23 (ENSPMJG00000010072)	GLCE (ENSPMJG00000010071)	NOX5 (ENSPMJG00000010066) #8	ENSPMJG00000010061 #10	ENSPMJG00000010057 #12	ENSPMJG00000010045 #12	ITGA11 (ENSPMJG00000010024) #13	FEM1B (ENSPMJG00000010022) #14	ENSPMJG00000010020 #16	PIAS1 (ENSPMJG00000010016) #17	MAP2K5 (ENSPMJG00000010012) #19	C15orf61 (ENSPMJG00000009998) #20	IQCH (ENSPMJG00000009995) #21	AAGAB (ENSPMJG00000009992) #22	SMAD3 (ENSPMJG00000009991) #23	SMAD6 (ENSPMJG00000009983) #26	LCTL (ENSPMJG00000009979) #28	ZWILCH (ENSPMJG00000009977) #29	RPL4 (ENSPMJG00000009971) #30	SNAPC5 (ENSPMJG00000009967) #31	MAP2K1 (ENSPMJG00000009964) #32	TIPIN (ENSPMJG00000009939) #33	DIS3L (ENSPMJG00000009931) #34	MEGF11 (ENSPMJG00000009924) #35	RAB11A (ENSPMJG00000009921) #36	DENND4A (ENSPMJG00000009918) #37	SLC24A1 (ENSPMJG00000009917)	INTS14 (ENSPMJG00000009916)	HACD3 (ENSPMJG00000009915)
Passeriformes_d	ANCESTRAL SPECIES	12	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00940000160717
Flycatcher	MODERN SPECIES	1	KIF23 (ENSFALG00000010189)	PAQR5 (ENSFALG00000024286)	ENSFALG00000010185	NOX5 (ENSFALG00000026351) #8	ENSFALG00000026588 #10	CORO2B (ENSFALG00000010159) #12	ITGA11 (ENSFALG00000010154) #13	FEM1B (ENSFALG00000010149) #14	CLN6 (ENSFALG00000023153) #15	CALML4 (ENSFALG00000010143) #16	ENSFALG00000028365	PIAS1 (ENSFALG00000010137) #17	MAP2K5 (ENSFALG00000028460) #19	ENSFALG00000012905	IQCH (ENSFALG00000012896) #21	AAGAB (ENSFALG00000028875) #22	SMAD3 (ENSFALG00000028582) #23	SMAD6 (ENSFALG00000012842) #26	ENSFALG00000023761	LCTL (ENSFALG00000012819) #28	ZWILCH (ENSFALG00000012802) #29	RPL4 (ENSFALG00000024664) #30	LACTB (ENSFALG00000012785)	TPM1 (ENSFALG00000026833)	TLN2 (ENSFALG00000012750)	ENSFALG00000012743	VPS13C (ENSFALG00000012641)	RORA (ENSFALG00000012589)	ENSFALG00000026543	ICE2 (ENSFALG00000012586)	ANXA2 (ENSFALG00000028021)
Passeriformes_g	ANCESTRAL SPECIES	13	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240.nc #15	ENSGT00940000164138	ENSGT00400000022240.oc #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT01060000252718	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Medium ground finch	DUPLICATION
Medium ground finch	MODERN SPECIES	69	KIF23 (ENSGFOG00000012017)	ENSGFOG00000012011	GLCE (ENSGFOG00000012008)	NOX5 (ENSGFOG00000011998) #8	ENSGFOG00000011990 #10	CORO2B (ENSGFOG00000011982) #12	ITGA11 (ENSGFOG00000011965) #13	ENSGFOG00000011958	CLN6 (ENSGFOG00000011952) #15	CALML4 (ENSGFOG00000011946) #16	PIAS1 (ENSGFOG00000011939) #17	MAP2K5 (ENSGFOG00000011911) #19	ENSGFOG00000011897 #20	IQCH (ENSGFOG00000011884) #21	ENSGFOG00000011876 #22	ENSGFOG00000011872 #22	SMAD3 (ENSGFOG00000011865) #23	SMAD6 (ENSGFOG00000011856) #26	LCTL (ENSGFOG00000011846) #28	ZWILCH (ENSGFOG00000011836) #29	RPL4 (ENSGFOG00000011811) #30	ENSGFOG00000011806	MAP2K1 (ENSGFOG00000011801) #32	TIPIN (ENSGFOG00000011794) #33	DIS3L (ENSGFOG00000011782) #34	MEGF11 (ENSGFOG00000011585) #35	RAB11A (ENSGFOG00000011557) #36	DENND4A (ENSGFOG00000010346) #37	SLC24A1 (ENSGFOG00000010269)	INTS14 (ENSGFOG00000010255)	HACD3 (ENSGFOG00000010246)
Medium ground finch	MODERN SPECIES	69	TLE3 (ENSGFOG00000012034)	KIF23 (ENSGFOG00000012017)	ENSGFOG00000012011	GLCE (ENSGFOG00000012008)	NOX5 (ENSGFOG00000011998) #8	ENSGFOG00000011990 #10	CORO2B (ENSGFOG00000011982) #12	ITGA11 (ENSGFOG00000011965) #13	ENSGFOG00000011958	CLN6 (ENSGFOG00000011952) #15	CALML4 (ENSGFOG00000011946) #16	PIAS1 (ENSGFOG00000011939) #17	MAP2K5 (ENSGFOG00000011911) #19	ENSGFOG00000011897 #20	IQCH (ENSGFOG00000011884) #21	ENSGFOG00000011876 #22	ENSGFOG00000011872 #22	SMAD3 (ENSGFOG00000011865) #23	SMAD6 (ENSGFOG00000011856) #26	LCTL (ENSGFOG00000011846) #28	ZWILCH (ENSGFOG00000011836) #29	RPL4 (ENSGFOG00000011811) #30	ENSGFOG00000011806	MAP2K1 (ENSGFOG00000011801) #32	TIPIN (ENSGFOG00000011794) #33	DIS3L (ENSGFOG00000011782) #34	MEGF11 (ENSGFOG00000011585) #35	RAB11A (ENSGFOG00000011557) #36	DENND4A (ENSGFOG00000010346) #37	SLC24A1 (ENSGFOG00000010269)	INTS14 (ENSGFOG00000010255)
Passeroidea	ANCESTRAL SPECIES	12	ENSGT00390000006043.f	ENSGT00990000212087	ENSGT00390000006043.e	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240.nc #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT01060000252718	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Zebra finch	MODERN SPECIES	1	ENSTGUG00000024307	ENSTGUG00000024602	ENSTGUG00000019518	ENSTGUG00000026437 #8	ANP32A (ENSTGUG00000009670) #10	ENSTGUG00000020847 #12	ENSTGUG00000009614 #13	ENSTGUG00000024498 #14	ENSTGUG00000021449 #15	ENSTGUG00000029271 #16	ENSTGUG00000009553 #17	ENSTGUG00000025021 #18	MAP2K5 (ENSTGUG00000009531) #19	ENSTGUG00000009527	IQCH (ENSTGUG00000009504) #21	AAGAB (ENSTGUG00000009497) #22	SMAD3 (ENSTGUG00000009470) #23	SMAD6 (ENSTGUG00000009467) #26	LCTL (ENSTGUG00000009457) #28	ZWILCH (ENSTGUG00000009439) #29	RPL4 (ENSTGUG00000009403) #30	MAP2K1 (ENSTGUG00000009363) #32	ENSTGUG00000019914	TIPIN (ENSTGUG00000009358) #33	DIS3L (ENSTGUG00000009315) #34	MEGF11 (ENSTGUG00000009293) #35	RAB11A (ENSTGUG00000009279) #36	DENND4A (ENSTGUG00000009220) #37	SLC24A1 (ENSTGUG00000009206)	INTS14 (ENSTGUG00000009182)	HACD3 (ENSTGUG00000009174)
Common canary	MODERN SPECIES	12	PAQR5 (ENSSCAG00000010668)	ENSSCAG00000010664	GLCE (ENSSCAG00000010658)	NOX5 (ENSSCAG00000010650) #8	ENSSCAG00000010637 #10	CORO2B (ENSSCAG00000010620) #12	ITGA11 (ENSSCAG00000010528) #13	ENSSCAG00000010505	ENSSCAG00000010498 #15	ENSSCAG00000010493 #15	CALML4 (ENSSCAG00000010490) #16	PIAS1 (ENSSCAG00000010481) #17	MAP2K5 (ENSSCAG00000010448) #19	ENSSCAG00000010438	IQCH (ENSSCAG00000010432) #21	AAGAB (ENSSCAG00000010418) #22	SMAD3 (ENSSCAG00000010414) #23	SMAD6 (ENSSCAG00000010407) #26	ENSSCAG00000010404	ENSSCAG00000010394	LCTL (ENSSCAG00000010374) #28	ZWILCH (ENSSCAG00000010364) #29	RPL4 (ENSSCAG00000010344) #30	ENSSCAG00000010341	MAP2K1 (ENSSCAG00000010333) #32	TIPIN (ENSSCAG00000010328) #33	DIS3L (ENSSCAG00000010324) #34	MEGF11 (ENSSCAG00000010255) #35	RAB11A (ENSSCAG00000010226) #36	DENND4A (ENSSCAG00000010214) #37	SLC24A1 (ENSSCAG00000010206)
Neognathae_c	ANCESTRAL SPECIES	15	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Kakapo	MODERN SPECIES	1	KIF23 (ENSSHBG00005011580)	PAQR5 (ENSSHBG00005011637)	GLCE (ENSSHBG00005011650)	NOX5 (ENSSHBG00005011668) #8	ENSSHBG00005011703 #10	CORO2B (ENSSHBG00005011717) #12	ITGA11 (ENSSHBG00005011743) #13	FEM1B (ENSSHBG00005011772) #14	CLN6 (ENSSHBG00005011786) #15	CALML4 (ENSSHBG00005011797) #16	PIAS1 (ENSSHBG00005011813) #17	SKOR1 (ENSSHBG00005011833) #18	MAP2K5 (ENSSHBG00005000699) #19	C15orf61 (ENSSHBG00005000716) #20	IQCH (ENSSHBG00005000728) #21	AAGAB (ENSSHBG00005000737) #22	SMAD3 (ENSSHBG00005000770) #23	SMAD6 (ENSSHBG00005000779) #26	LCTL (ENSSHBG00005008922) #28	ZWILCH (ENSSHBG00005008951) #29	RPL4 (ENSSHBG00005009017) #30	SNAPC5 (ENSSHBG00005009047) #31	MAP2K1 (ENSSHBG00005009053) #32	TIPIN (ENSSHBG00005009068) #33	DIS3L (ENSSHBG00005009084) #34	ENSSHBG00005009158 #35	ENSSHBG00005009181 #35	RAB11A (ENSSHBG00005009201) #36	DENND4A (ENSSHBG00005009346) #37	SLC24A1 (ENSSHBG00005009620)	INTS14 (ENSSHBG00005009649)
Golden eagle	MODERN SPECIES	21	TLE3 (ENSACCG00020001470)	KIF23 (ENSACCG00020001359)	PAQR5 (ENSACCG00020001307)	GLCE (ENSACCG00020001293)	NOX5 (ENSACCG00020001264) #8	ENSACCG00020001229 #10	CORO2B (ENSACCG00020001194) #12	ITGA11 (ENSACCG00020001060) #13	FEM1B (ENSACCG00020000880) #14	CLN6 (ENSACCG00020000865) #15	CALML4 (ENSACCG00020000839) #16	PIAS1 (ENSACCG00020000781) #17	SKOR1 (ENSACCG00020000753) #18	MAP2K5 (ENSACCG00020000704) #19	C15orf61 (ENSACCG00020000661) #20	AAGAB (ENSACCG00020000560) #22	SMAD3 (ENSACCG00020000522) #23	SMAD6 (ENSACCG00020000507) #26	LCTL (ENSACCG00020000480) #28	ZWILCH (ENSACCG00020000434) #29	RPL4 (ENSACCG00020000310) #30	SNAPC5 (ENSACCG00020010201) #31	MAP2K1 (ENSACCG00020010187) #32	TIPIN (ENSACCG00020010172) #33	DIS3L (ENSACCG00020010156) #34	MEGF11 (ENSACCG00020010081) #35	RAB11A (ENSACCG00020009992) #36	DENND4A (ENSACCG00020009959) #37	SLC24A1 (ENSACCG00020009936)	INTS14 (ENSACCG00020009917)	HACD3 (ENSACCG00020009900)
African ostrich	MODERN SPECIES	336		KIF23 (ENSSCUG00000002925)	ENSSCUG00000002941	ENSSCUG00000002943	GLCE (ENSSCUG00000002945)	ENSSCUG00000002948 #10	ITGA11 (ENSSCUG00000002951) #13	ENSSCUG00000002954	CLN6 (ENSSCUG00000002955) #15	CALML4 (ENSSCUG00000002956) #16	PIAS1 (ENSSCUG00000002957) #17	MAP2K5 (ENSSCUG00000002958) #19	ENSSCUG00000002959	ENSSCUG00000002960	IQCH (ENSSCUG00000002961) #21	ENSSCUG00000002962 #22	SMAD3 (ENSSCUG00000002964) #23	ZWILCH (ENSSCUG00000002970) #29	RPL4 (ENSSCUG00000002974) #30	ENSSCUG00000002979	MAP2K1 (ENSSCUG00000002980) #32
Australian saltwater crocodile	MODERN SPECIES	31	ENSCPRG00005000993	GLCE (ENSCPRG00005000985)	ENSCPRG00005000980	NOX5 (ENSCPRG00005000970) #8	ENSCPRG00005000961	ENSCPRG00005000951 #10	CORO2B (ENSCPRG00005000933) #12	ITGA11 (ENSCPRG00005000885) #13	ENSCPRG00005000881	CLN6 (ENSCPRG00005000877) #15	CALML4 (ENSCPRG00005000835) #16	PIAS1 (ENSCPRG00005000826) #17	MAP2K5 (ENSCPRG00005000813) #19	C15orf61 (ENSCPRG00005000791) #20	IQCH (ENSCPRG00005000770) #21	AAGAB (ENSCPRG00005000756) #22	SMAD3 (ENSCPRG00005000730) #23	SMAD6 (ENSCPRG00005000698) #26	LCTL (ENSCPRG00005000669) #28	ZWILCH (ENSCPRG00005000651) #29	RPL4 (ENSCPRG00005000630) #30	SNAPC5 (ENSCPRG00005000626) #31	MAP2K1 (ENSCPRG00005000623) #32	TIPIN (ENSCPRG00005000607) #33	DIS3L (ENSCPRG00005000594) #34	MEGF11 (ENSCPRG00005000552) #35	RAB11A (ENSCPRG00005000532) #36	DENND4A (ENSCPRG00005000499) #37	ENSCPRG00005000484	ENSCPRG00005000476	INTS14 (ENSCPRG00005000472)
Cryptodira	ANCESTRAL SPECIES	13	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00950000186456	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00950000186456	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00950000186456	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00960000193170	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Goode s thornscrub tortoise	MODERN SPECIES	1	ENSGEVG00005012114	GLCE (ENSGEVG00005004077)	NOX5 (ENSGEVG00005004166) #8	ENSGEVG00005004193 #10	CORO2B (ENSGEVG00005004248) #12	ITGA11 (ENSGEVG00005004365) #13	FEM1B (ENSGEVG00005004527) #14	CLN6 (ENSGEVG00005004545) #15	CALML4 (ENSGEVG00005004576) #16	PIAS1 (ENSGEVG00005004663) #17	SKOR1 (ENSGEVG00005004798) #18	MAP2K5 (ENSGEVG00005004903) #19	C15orf61 (ENSGEVG00005005051) #20	IQCH (ENSGEVG00005005068) #21	ENSGEVG00005005107	AAGAB (ENSGEVG00005005135) #22	SMAD3 (ENSGEVG00005005160) #23	SMAD6 (ENSGEVG00005005184) #26	LCTL (ENSGEVG00005005207) #28	ZWILCH (ENSGEVG00005005317) #29	RPL4 (ENSGEVG00005005421) #30	SNAPC5 (ENSGEVG00005005478) #31	MAP2K1 (ENSGEVG00005005509) #32	TIPIN (ENSGEVG00005005547) #33	DIS3L (ENSGEVG00005005574) #34	MEGF11 (ENSGEVG00005005633) #35	ENSGEVG00005005833	RAB11A (ENSGEVG00005005859) #36	DENND4A (ENSGEVG00005005910) #37	SLC24A1 (ENSGEVG00005006015)	INTS14 (ENSGEVG00005006084)
Abingdon island giant tortoise	MODERN SPECIES	2468	ENSCABG00000007083	ENSCABG00000007082	GLCE (ENSCABG00000007080)	NOX5 (ENSCABG00000007079) #8	ENSCABG00000007077 #10	CORO2B (ENSCABG00000007062) #12	ITGA11 (ENSCABG00000007055) #13	FEM1B (ENSCABG00000007048) #14	CLN6 (ENSCABG00000007043) #15	CALML4 (ENSCABG00000007026) #16	PIAS1 (ENSCABG00000007017) #17	SKOR1 (ENSCABG00000007009) #18	MAP2K5 (ENSCABG00000007008) #19	C15orf61 (ENSCABG00000007006) #20	IQCH (ENSCABG00000006989) #21	AAGAB (ENSCABG00000006983) #22	SMAD3 (ENSCABG00000006979) #23	ENSCABG00000006977	TMEM14C (ENSCABG00000006974)	PAK1IP1 (ENSCABG00000006969)	ENSCABG00000006965	NUP153 (ENSCABG00000005639)	FAM8A1 (ENSCABG00000005603)	CAP2 (ENSCABG00000005601)	RBM24 (ENSCABG00000005598)	ENSCABG00000005592	ATXN1 (ENSCABG00000005586)
Emydidae	ANCESTRAL SPECIES	21	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764.b #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Three-toed box turtle	MODERN SPECIES	27	KIF23 (ENSTMTG00000009131)	PAQR5 (ENSTMTG00000009106)	GLCE (ENSTMTG00000009094)	NOX5 (ENSTMTG00000009057) #8	ENSTMTG00000009040 #10	ENSTMTG00000009016 #12	ITGA11 (ENSTMTG00000008937) #13	FEM1B (ENSTMTG00000008924) #14	CLN6 (ENSTMTG00000008908) #15	CALML4 (ENSTMTG00000008891) #16	PIAS1 (ENSTMTG00000008856) #17	SKOR1 (ENSTMTG00000008807) #18	MAP2K5 (ENSTMTG00000008725) #19	ENSTMTG00000008700 #20	IQCH (ENSTMTG00000008467) #21	AAGAB (ENSTMTG00000008426) #22	SMAD3 (ENSTMTG00000008413) #23	SMAD6 (ENSTMTG00000008403) #26	LCTL (ENSTMTG00000008371) #28	ZWILCH (ENSTMTG00000008057) #29	ENSTMTG00000008003 #30	ENSTMTG00000007987	MAP2K1 (ENSTMTG00000007966) #32	ENSTMTG00000007940 #33	DIS3L (ENSTMTG00000007906) #34	MEGF11 (ENSTMTG00000007756) #35	RAB11A (ENSTMTG00000007735) #36	DENND4A (ENSTMTG00000007680) #37	SLC24A1 (ENSTMTG00000007638)	INTS14 (ENSTMTG00000007590)	HACD3 (ENSTMTG00000007567)
painted turtle	MODERN SPECIES	742	ENSCPBG00000025512	PAQR5 (ENSCPBG00000025513)	GLCE (ENSCPBG00000025514)	NOX5 (ENSCPBG00000025517) #8	ENSCPBG00000025519 #10	CORO2B (ENSCPBG00000025523) #12	ITGA11 (ENSCPBG00000025526) #13	FEM1B (ENSCPBG00000025536) #14	CLN6 (ENSCPBG00000025538) #15	CALML4 (ENSCPBG00000025539) #16	PIAS1 (ENSCPBG00000025540) #17	SKOR1 (ENSCPBG00000025542) #18	MAP2K5 (ENSCPBG00000025545) #19	C15orf61 (ENSCPBG00000025551) #20	IQCH (ENSCPBG00000025554) #21	AAGAB (ENSCPBG00000025560) #22	SMAD3 (ENSCPBG00000025562) #23	SMAD6 (ENSCPBG00000025564) #26
Chinese turtle	MODERN SPECIES	1779	TLE3 (ENSPSIG00000016264)	ENSPSIG00000016179	KIF23 (ENSPSIG00000015679)	PAQR5 (ENSPSIG00000015595)	GLCE (ENSPSIG00000015287)	NOX5 (ENSPSIG00000014865) #8	ENSPSIG00000014700 #10	CORO2B (ENSPSIG00000014178) #12	ITGA11 (ENSPSIG00000012913) #13	FEM1B (ENSPSIG00000012891) #14	CLN6 (ENSPSIG00000012575) #15	CALML4 (ENSPSIG00000012516) #16	PIAS1 (ENSPSIG00000012489) #17	MAP2K5 (ENSPSIG00000011712) #19	IQCH (ENSPSIG00000011323) #21	AAGAB (ENSPSIG00000011201) #22	SMAD3 (ENSPSIG00000010579) #23
Lepidosauria	ANCESTRAL SPECIES	19	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000164138	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00950000186456	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00940000160717
Episquamata	ANCESTRAL SPECIES	9	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000164138	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00950000186456	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00940000160717	ENSGT00940000159637
Laterata	ANCESTRAL SPECIES	16	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000164138	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00940000160717	ENSGT00940000159637
Common wall lizard	MODERN SPECIES	5	HDHD3 (ENSPMRG00000014803)	ALAD (ENSPMRG00000014792)	NOX5 (ENSPMRG00000014775) #8	ENSPMRG00000014760 #10	CORO2B (ENSPMRG00000014736) #12	ITGA11 (ENSPMRG00000014723) #13	ENSPMRG00000014717	ENSPMRG00000014712	CLN6 (ENSPMRG00000014706) #15	CALML4 (ENSPMRG00000014698) #16	PIAS1 (ENSPMRG00000014688) #17	SKOR1 (ENSPMRG00000014676) #18	MAP2K5 (ENSPMRG00000014661) #19	C15orf61 (ENSPMRG00000014653) #20	IQCH (ENSPMRG00000014635) #21	AAGAB (ENSPMRG00000014629) #22	ENSPMRG00000014621 #23	SMAD6 (ENSPMRG00000014612) #26	ZWILCH (ENSPMRG00000014603) #29	RPL4 (ENSPMRG00000014570) #30	SNAPC5 (ENSPMRG00000014563) #31	MAP2K1 (ENSPMRG00000014555) #32	TIPIN (ENSPMRG00000014546) #33	DIS3L (ENSPMRG00000014540) #34	ENSPMRG00000014537	ENSPMRG00000014534	MEGF11 (ENSPMRG00000014263) #35	RAB11A (ENSPMRG00000014183) #36	DENND4A (ENSPMRG00000014169) #37	INTS14 (ENSPMRG00000014159)	HACD3 (ENSPMRG00000014152)
Argentine black and white tegu	MODERN SPECIES	46	KIF23 (ENSSMRG00000021553)	PAQR5 (ENSSMRG00000021554)	GLCE (ENSSMRG00000021556)	NOX5 (ENSSMRG00000021557) #8	ENSSMRG00000021559 #10	CORO2B (ENSSMRG00000021560) #12	ITGA11 (ENSSMRG00000021561) #13	ENSSMRG00000021562	CLN6 (ENSSMRG00000021563) #15	CALML4 (ENSSMRG00000021564) #16	PIAS1 (ENSSMRG00000021565) #17	SKOR1 (ENSSMRG00000021566) #18	MAP2K5 (ENSSMRG00000021567) #19	C15orf61 (ENSSMRG00000021568) #20	IQCH (ENSSMRG00000021569) #21	AAGAB (ENSSMRG00000021570) #22	SMAD3 (ENSSMRG00000021571) #23	SMAD6 (ENSSMRG00000021572) #26	ZWILCH (ENSSMRG00000021573) #29	RPL4 (ENSSMRG00000021574) #30	SNAPC5 (ENSSMRG00000021580) #31	MAP2K1 (ENSSMRG00000021581) #32	TIPIN (ENSSMRG00000021582) #33	DIS3L (ENSSMRG00000021584) #34	MEGF11 (ENSSMRG00000021585) #35	RAB11A (ENSSMRG00000021588) #36	DENND4A (ENSSMRG00000021589) #37	INTS14 (ENSSMRG00000021590)	HACD3 (ENSSMRG00000021591)	DPP8 (ENSSMRG00000021592)	IGDCC4 (ENSSMRG00000021593)
Toxicofera	ANCESTRAL SPECIES	40		ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465.c #13	ENSGT00940000164138	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00950000186456	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00940000160717	ENSGT00940000159637
Elapidae	ANCESTRAL SPECIES	12	ENSGT00940000159819	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465.c #13	ENSGT00940000164138	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00950000186456	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.d #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00940000160717	ENSGT00940000159268.d
Indian cobra	MODERN SPECIES	14	CIAO2A (ENSNNAG00000014216)	ADAMTS7 (ENSNNAG00000012990)	GLCE (ENSNNAG00000012927)	NOX5 (ENSNNAG00000012871) #8	ENSNNAG00000012830 #10	CORO2B (ENSNNAG00000012805) #12	ITGA11 (ENSNNAG00000012334) #13	ENSNNAG00000012296	CLN6 (ENSNNAG00000012206) #15	PIAS1 (ENSNNAG00000012101) #17	SKOR1 (ENSNNAG00000011796) #18	MAP2K5 (ENSNNAG00000011631) #19	C15orf61 (ENSNNAG00000011603) #20	IQCH (ENSNNAG00000011412) #21	ENSNNAG00000011356	AAGAB (ENSNNAG00000011287) #22	SMAD3 (ENSNNAG00000011272) #23	SMAD6 (ENSNNAG00000011230) #26	ZWILCH (ENSNNAG00000011099) #29	RPL4 (ENSNNAG00000011026) #30	SNAPC5 (ENSNNAG00000011012) #31	MAP2K1 (ENSNNAG00000010963) #32	TIPIN (ENSNNAG00000010924) #33	DIS3L (ENSNNAG00000010799) #34	MEGF11 (ENSNNAG00000010468) #35	RAB11A (ENSNNAG00000010435) #36	DENND4A (ENSNNAG00000010330) #37	INTS14 (ENSNNAG00000010021)	HACD3 (ENSNNAG00000009979)	DPP8 (ENSNNAG00000007591)	SYNM (ENSNNAG00000007433)
Elapidae_a	ANCESTRAL SPECIES	37	ENSGT00390000016791	ENSGT00390000017697.a	ENSGT00940000159819	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465.c #13	ENSGT00940000164138	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.d #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B.n #37	ENSGT00940000155836.B.m #37	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00940000160717	ENSGT00940000159268.d
Acanthophiinae	ANCESTRAL SPECIES	37	ENSGT00390000018400	ENSGT00390000016791	ENSGT00940000159819	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465.c #13	ENSGT00940000164138	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b.d #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B.m #37	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00940000160717	ENSGT00940000159268.d	ENSGT00940000156682
Mainland tiger snake	MODERN SPECIES	49														MAP2K5 (ENSNSUG00000004022) #19	C15orf61 (ENSNSUG00000004019) #20	AAGAB (ENSNSUG00000003997) #22	SMAD3 (ENSNSUG00000003978) #23	ZWILCH (ENSNSUG00000003975) #29	ENSNSUG00000003967 #30	SNAPC5 (ENSNSUG00000003966) #31	MAP2K1 (ENSNSUG00000003931) #32	TIPIN (ENSNSUG00000003924) #33	ENSNSUG00000003922 #34	MEGF11 (ENSNSUG00000003910) #35	RAB11A (ENSNSUG00000003908) #36	ENSNSUG00000003906 #37	INTS14 (ENSNSUG00000003780)	HACD3 (ENSNSUG00000003778)	DPP8 (ENSNSUG00000002945)	SYNM (ENSNSUG00000002939)	IGF1R (ENSNSUG00000002935)
Eastern brown snake	MODERN SPECIES	43	SPG11 (ENSPTXG00000015497)	ADAMTS7 (ENSPTXG00000015512)	GLCE (ENSPTXG00000015519)	NOX5 (ENSPTXG00000015521) #8	ENSPTXG00000015522 #10	CORO2B (ENSPTXG00000015523) #12	ITGA11 (ENSPTXG00000015524) #13	ENSPTXG00000015525	CLN6 (ENSPTXG00000015526) #15	CALML4 (ENSPTXG00000015527) #16	PIAS1 (ENSPTXG00000015528) #17	ENSPTXG00000015529	MAP2K5 (ENSPTXG00000015531) #19	C15orf61 (ENSPTXG00000015534) #20	IQCH (ENSPTXG00000015536) #21	AAGAB (ENSPTXG00000015539) #22	SMAD3 (ENSPTXG00000015540) #23	SMAD6 (ENSPTXG00000015543) #26	RPL4 (ENSPTXG00000015545) #30	SNAPC5 (ENSPTXG00000015552) #31	MAP2K1 (ENSPTXG00000015554) #32	TIPIN (ENSPTXG00000015555) #33	DIS3L (ENSPTXG00000015557) #34	MEGF11 (ENSPTXG00000015560) #35	RAB11A (ENSPTXG00000015564) #36	DENND4A (ENSPTXG00000015565) #37	INTS14 (ENSPTXG00000015567)	HACD3 (ENSPTXG00000015568)	DPP8 (ENSPTXG00000015569)	SYNM (ENSPTXG00000015583)	IGF1R (ENSPTXG00000015585)
Blue-lipped sea krait	MODERN SPECIES	7284														C15orf61 (ENSLLTG00000004528) #20	IQCH (ENSLLTG00000004083) #21	AAGAB (ENSLLTG00000004017) #22
Lizard	MODERN SPECIES	1079									FEM1B (ENSACAG00000001361) #14	CLN6 (ENSACAG00000010272) #15	CALML4 (ENSACAG00000010259) #16	PIAS1 (ENSACAG00000010183) #17	MAP2K5 (ENSACAG00000010072) #19	C15orf61 (ENSACAG00000038258) #20	IQCH (ENSACAG00000010052) #21	AAGAB (ENSACAG00000010006) #22	SMAD3 (ENSACAG00000009914) #23	SMAD6 (ENSACAG00000009899) #26	ZWILCH (ENSACAG00000009844) #29	RPL4 (ENSACAG00000009759) #30	ENSACAG00000004994	ENSACAG00000005016
tuatara	MODERN SPECIES	842			KIF23 (ENSSPUG00000012998)	PAQR5 (ENSSPUG00000013045)	GLCE (ENSSPUG00000013062)	NOX5 (ENSSPUG00000013079) #8	ENSSPUG00000013106 #10	CORO2B (ENSSPUG00000013122) #12	ITGA11 (ENSSPUG00000013143) #13	ENSSPUG00000013166	CLN6 (ENSSPUG00000013176) #15	CALML4 (ENSSPUG00000013190) #16	PIAS1 (ENSSPUG00000013205) #17	MAP2K5 (ENSSPUG00000013303) #19	C15orf61 (ENSSPUG00000013351) #20	AAGAB (ENSSPUG00000013388) #22	SMAD3 (ENSSPUG00000013429) #23	SMAD6 (ENSSPUG00000013465) #26	LCTL (ENSSPUG00000013481) #28	ENSSPUG00000013505 #29	RPL4 (ENSSPUG00000013570) #30	SNAPC5 (ENSSPUG00000013599) #31	MAP2K1 (ENSSPUG00000013607) #32	TIPIN (ENSSPUG00000013622) #33	DIS3L (ENSSPUG00000013652) #34	MEGF11 (ENSSPUG00000013679) #35	RAB11A (ENSSPUG00000013698) #36	ENSSPUG00000013706 #37	ENSSPUG00000013716 #37	ENSSPUG00000013724 #37	ENSSPUG00000013730 #37
Anura	ANCESTRAL SPECIES		ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00390000010331 #31	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Frog	MODERN SPECIES	3	glce (ENSXETG00000007825)	nox5 (ENSXETG00000007819) #8	anp32a (ENSXETG00000007821) #10	coro2b (ENSXETG00000025308) #12	itga11 (ENSXETG00000007816) #13	fem1b (ENSXETG00000007817)	ENSXETG00000044370	cln6 (ENSXETG00000029932) #15	calml4 (ENSXETG00000007814) #16	pias1 (ENSXETG00000007813) #17	skor1 (ENSXETG00000007811) #18	ENSXETG00000044421	map2k5 (ENSXETG00000007809) #19	c15orf61 (ENSXETG00000030493) #20	pnlip (ENSXETG00000007807) #21	aagab (ENSXETG00000007805) #22	smad3 (ENSXETG00000007804) #23	smad6 (ENSXETG00000015939) #26	lctl (ENSXETG00000015904) #28	zwilch (ENSXETG00000015894) #29	rpl4 (ENSXETG00000015898) #30	snapc5 (ENSXETG00000015893)	map2k1 (ENSXETG00000015887) #32	tipin (ENSXETG00000024752) #33	dis3l (ENSXETG00000015865) #34	megf11 (ENSXETG00000015852) #35	rab11a (ENSXETG00000006639) #36	dennd4a (ENSXETG00000006641) #37	slc24a1 (ENSXETG00000033301)	ints14 (ENSXETG00000006644)	hacd3 (ENSXETG00000030041)
Leishan spiny toad	MODERN SPECIES	6	GLCE (ENSLLEG00000012450)	NOX5 (ENSLLEG00000012326) #8	ENSLLEG00000012168 #10	CORO2B (ENSLLEG00000011668) #12	ENSLLEG00000011591	ITGA11 (ENSLLEG00000011407) #13	FEM1B (ENSLLEG00000011357) #14	CLN6 (ENSLLEG00000011246) #15	CALML4 (ENSLLEG00000011194) #16	PIAS1 (ENSLLEG00000010874) #17	ENSLLEG00000010729	SKOR1 (ENSLLEG00000010653) #18	MAP2K5 (ENSLLEG00000010224) #19	C15orf61 (ENSLLEG00000010164) #20	IQCH (ENSLLEG00000009988) #21	AAGAB (ENSLLEG00000009905) #22	SMAD3 (ENSLLEG00000009194) #23	SMAD6 (ENSLLEG00000009090) #26	ENSLLEG00000009059	LCTL (ENSLLEG00000008419) #28	ZWILCH (ENSLLEG00000008260) #29	ENSLLEG00000008052 #30	ENSLLEG00000008024	SNAPC5 (ENSLLEG00000008005) #31	ENSLLEG00000007941 #32	TIPIN (ENSLLEG00000007891) #33	DIS3L (ENSLLEG00000007758) #34	ENSLLEG00000007739	MEGF11 (ENSLLEG00000007218) #35	RAB11A (ENSLLEG00000007065) #36	DENND4A (ENSLLEG00000006505) #37
Coelacanth	MODERN SPECIES	951												SKOR1 (ENSLACG00000014295) #18	MAP2K5 (ENSLACG00000012658) #19	C15orf61 (ENSLACG00000012466) #20	IQCH (ENSLACG00000011619) #21	AAGAB (ENSLACG00000011060) #22	SMAD3 (ENSLACG00000010552) #23	SMAD6 (ENSLACG00000005364) #26
Actinopterygii	ANCESTRAL SPECIES	92	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000164138	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d #23	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00940000160717	ENSGT00940000159637
Neopterygii	ANCESTRAL SPECIES	85	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000164138	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d #23	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000157244	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b.e	ENSGT01030000234532.B.e.b.f
Osteoglossocephalai	ANCESTRAL SPECIES	148	ENSGT00940000158689 #12	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000162591 #8	ENSGT00390000006043	ENSGT00940000158844	ENSGT00940000155837	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.a	ENSGT01030000234534.B.a.b	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d #23	ENSGT00940000157369 #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.A ##35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b.e	ENSGT01030000234532.B.e.b.f	ENSGT00390000009486	ENSGT00530000062962.b.a	ENSGT00440000038107
Clupeocephala	ANCESTRAL SPECIES	69	ENSGT00390000018587.f	ENSGT00440000033504.A	ENSGT00940000165330	ENSGT00940000157760.g.b	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000154914 #36
Otomorpha	ANCESTRAL SPECIES							ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT01030000234539.a.a.b.a.b.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b.f	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Otophysi	ANCESTRAL SPECIES	4	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000158844.l	ENSGT00940000155837	ENSGT01030000234519.e.b.j.b.a	ENSGT00940000157475.s.b	ENSGT01030000235447	ENSGT00950000182965.a.b.a.a	ENSGT01030000234518.B.a.b.a.b.j	ENSGT01030000234539.a.a.b.a.b.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b.i #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b.f	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Characiphysae	ANCESTRAL SPECIES	8	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000158844.l	ENSGT00940000155837	ENSGT01030000234519.e.b.j.b.a	ENSGT00940000157475.s.b	ENSGT01030000235447	ENSGT00950000182965.a.b.a.a	ENSGT01030000234518.B.a.b.a.b.j	ENSGT01030000234539.a.a.b.a.b.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b.i #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b.f	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Channel catfish	MODERN SPECIES	23	wee2 (ENSIPUG00000023076)	kiaa1147 (ENSIPUG00000023061)	agk (ENSIPUG00000023045)	ighmbp2 (ENSIPUG00000023036)	rapsn (ENSIPUG00000023032)	KBTBD4 (ENSIPUG00000023030)	paqr5a (ENSIPUG00000023028)	kif23 (ENSIPUG00000022986)	gro2 (ENSIPUG00000022942)	ENSIPUG00000022933	morf4l1 (ENSIPUG00000022885)	PIAS1 (ENSIPUG00000022852) #17	skor1b (ENSIPUG00000022829) #18	c4h15orf61 (ENSIPUG00000021762) #20	iqch (ENSIPUG00000021716) #21	AAGAB (ENSIPUG00000021694) #22	smad3b (ENSIPUG00000021649) #23	SMAD6 (ENSIPUG00000021637) #26	snapc5 (ENSIPUG00000021633) #31	LCTL (ENSIPUG00000021616) #28	zwilch (ENSIPUG00000021572) #29	rpl4-b (ENSIPUG00000021502) #30	map2k1 (ENSIPUG00000021471) #32	megf11 (ENSIPUG00000021414) ##35	Rab11a (ENSIPUG00000021401) #36	dennd4a (ENSIPUG00000021338) #37	slc24a1 (ENSIPUG00000021316)	vwa9 (ENSIPUG00000021289)	hacd3 (ENSIPUG00000021269)	ppcdc (ENSIPUG00000021242)	c4h15orf39 (ENSIPUG00000021229)
Characiphysae_b	ANCESTRAL SPECIES	4	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000158844.l	ENSGT00940000155837	ENSGT01030000234519.e.b.j.b.a	ENSGT00940000157475.s.b	ENSGT01030000235447	ENSGT00950000182965.a.b.a.a	ENSGT01030000234518.B.a.b.a.b.j	ENSGT01030000234539.a.a.b.a.b.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b.i #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b.f	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Characoidei	ANCESTRAL SPECIES	30	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000158844.l	ENSGT00940000155837	ENSGT01030000234519.e.b.j.b.a	ENSGT00940000157475.s.b	ENSGT01030000235447	ENSGT00940000157475.t	ENSGT00950000182965.a.b.a.a	ENSGT01030000234518.B.a.b.a.b.j	ENSGT01030000234539.a.a.b.a.b.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b.i #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b.f	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Red-bellied piranha	MODERN SPECIES		ENSPNAG00000006643	rapsn (ENSPNAG00000005844)	kbtbd4 (ENSPNAG00000002995)	ENSPNAG00000013945	ddb2 (ENSPNAG00000013976)	paqr5a (ENSPNAG00000014000)	kif23 (ENSPNAG00000014143)	tle3a (ENSPNAG00000003051)	ENSPNAG00000014247	morf4l1 (ENSPNAG00000014280)	ENSPNAG00000014295	PIAS1 (ENSPNAG00000014367) #17	skor1b (ENSPNAG00000014398) #18	zgc:162898 (ENSPNAG00000003117) #20	iqch (ENSPNAG00000014434) #21	aagab (ENSPNAG00000014473) #22	smad3b (ENSPNAG00000003144) #23	smad6b (ENSPNAG00000014508) #26	snapc5 (ENSPNAG00000014521) #31	LCTL (ENSPNAG00000003168) #28	zwilch (ENSPNAG00000014620) #29	rpl4 (ENSPNAG00000014698) #30	map2k1 (ENSPNAG00000014728) #32	ENSPNAG00000014837 ##35	rab11a (ENSPNAG00000014863) #36	dennd4a (ENSPNAG00000014917) #37	SLC24A1 (ENSPNAG00000003338)	ints14 (ENSPNAG00000015024)	hacd3 (ENSPNAG00000015056)	ppcdc (ENSPNAG00000015060)	ENSPNAG00000015080
Mexicana tetra	MODERN SPECIES	9	rapsn (ENSAMXG00000039860)	kbtbd4 (ENSAMXG00000029227)	ENSAMXG00000033486	ddb2 (ENSAMXG00000000525)	paqr5a (ENSAMXG00000034830)	kif23 (ENSAMXG00000000541)	tle3a (ENSAMXG00000000547)	ENSAMXG00000035462	ENSAMXG00000040454	morf4l1 (ENSAMXG00000002753)	PIAS1 (ENSAMXG00000002784) #17	skor1b (ENSAMXG00000002804) #18	ENSAMXG00000039689	zgc:162898 (ENSAMXG00000002824) #20	iqch (ENSAMXG00000002847) #21	aagab (ENSAMXG00000034247) #22	smad3b (ENSAMXG00000002880) #23	smad6b (ENSAMXG00000002889) #26	ENSAMXG00000042016	snapc5 (ENSAMXG00000035746) #31	LCTL (ENSAMXG00000002915) #28	zwilch (ENSAMXG00000042209) #29	rpl4 (ENSAMXG00000029678) #30	map2k1 (ENSAMXG00000003000) #32	ENSAMXG00000003031 ##35	rab11a (ENSAMXG00000003155) #36	dennd4a (ENSAMXG00000003173) #37	SLC24A1 (ENSAMXG00000003180)	ints14 (ENSAMXG00000003207)	hacd3 (ENSAMXG00000036622)	ppcdc (ENSAMXG00000038023)
Electric eel	MODERN SPECIES	418			rapsn (ENSEEEG00000011031)	kbtbd4 (ENSEEEG00000011030)	ddb2 (ENSEEEG00000011028)	paqr5a (ENSEEEG00000011027)	kif23 (ENSEEEG00000010714)	ENSEEEG00000010685	TLE3 (ENSEEEG00000010301)	ENSEEEG00000010279	morf4l1 (ENSEEEG00000009806)	PIAS1 (ENSEEEG00000009745) #17	skor1b (ENSEEEG00000009737) #18	zgc:162898 (ENSEEEG00000009736) #20	iqch (ENSEEEG00000009734) #21	aagab (ENSEEEG00000009726) #22	smad3b (ENSEEEG00000009600) #23	smad6b (ENSEEEG00000009587) #26
Cyprinoidei	ANCESTRAL SPECIES	10	ENSGT01030000234583.a.a.d	ENSGT00390000016785	ENSGT00940000158775	ENSGT00510000047881	ENSGT00940000158844.l	ENSGT00940000155837	ENSGT01030000234519.e.b.j.b.a	ENSGT00940000157475.s.b	ENSGT01030000235447	ENSGT00950000182965.a.b.a.a	ENSGT01030000234518.B.a.b.a.b.j	ENSGT01030000234539.a.a.b.a.b.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b.i #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b.f	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	123															ENSGT00390000008908.a #21	ENSGT00390000007218.q #22	ENSGT00940000153499.b.b.d.a.b.i.b #23	ENSGT00940000158146.b.f #26	ENSGT00390000010331.n #31	ENSGT00940000157369.a.c #28	ENSGT00390000018145.f #30	ENSGT00940000153487.b.b.s #32	ENSGT00940000155333.A.b.b ##35	ENSGT00940000154914.tb #36	ENSGT00940000155836.B.c #37	ENSGT01030000234532.B.e.b.f.b	ENSGT00390000009486.e	ENSGT00530000062962.b.a.f.a	ENSGT00440000038107.o	ENSGT00940000169185.a	ENSGT00940000155744.g.a
Goldfish	MODERN SPECIES	37	dcun1d5 (ENSCARG00000055779)	capn5a (ENSCARG00000055845)	ompa (ENSCARG00000056164)	ENSCARG00000056175	GDPD4 (ENSCARG00000056300)	pak1 (ENSCARG00000056359)	aqp11 (ENSCARG00000056843)	clns1a (ENSCARG00000056853)	mlycd (ENSCARG00000056868)	rfx4 (ENSCARG00000056887)	ric8b (ENSCARG00000057023)	ENSCARG00000057062	ENSCARG00000057077 #17	skor1b (ENSCARG00000057106) #18	ENSCARG00000057132	aagab (ENSCARG00000057137) #22	smad3b (ENSCARG00000057166) #23	smad6b (ENSCARG00000057432) #26	snapc5 (ENSCARG00000057463) #31	LCTL (ENSCARG00000057492) #28	rpl4 (ENSCARG00000057625) #30	map2k1 (ENSCARG00000057706) #32	ENSCARG00000058612 ##35	rab11a (ENSCARG00000062368) #36	dennd4a (ENSCARG00000062471) #37	SLC24A1 (ENSCARG00000063727)	ints14 (ENSCARG00000063746)	hacd3 (ENSCARG00000063827)	ppcdc (ENSCARG00000063932)	ENSCARG00000063954	arih1 (ENSCARG00000063977)
Cyprininae_a	ANCESTRAL SPECIES	131															ENSGT00390000008908.a #21	ENSGT00390000007218.q #22	ENSGT00940000153499.b.b.d.a.b.i.b #23	ENSGT00940000158146.b.f #26	ENSGT00390000010331.n #31	ENSGT00940000157369.a.c #28	ENSGT00390000013696.f #29	ENSGT00390000018145.f #30	ENSGT00940000153487.b.b.s #32	ENSGT00940000155333.A.b.b ##35	ENSGT00940000154914.tb #36	ENSGT00940000155836.B.c #37	ENSGT01030000234532.B.e.b.f.b	ENSGT00390000009486.e	ENSGT00530000062962.b.a.f.a	ENSGT00440000038107.o	ENSGT00940000169185.a
Common carp reference	MODERN SPECIES	9	agk (ENSCCRG00000005190)	ighmbp2 (ENSCCRG00000018868)	rapsn (ENSCCRG00000019414)	kbtbd4 (ENSCCRG00000019417)	ddb2 (ENSCCRG00000018879)	kif23 (ENSCCRG00000004087)	tle3a (ENSCCRG00000029847)	ENSCCRG00000043403	ENSCCRG00000064433	morf4l1 (ENSCCRG00000031057)	ENSCCRG00000031056	PIAS1 (ENSCCRG00000043261) #17	skor1b (ENSCCRG00000043233) #18	ENSCCRG00000064665	iqch (ENSCCRG00000014287) #21	aagab (ENSCCRG00000014234) #22	smad3b (ENSCCRG00000014185) #23	smad6b (ENSCCRG00000028531) #26	snapc5 (ENSCCRG00000076911) #31	LCTL (ENSCCRG00000034940) #28	rpl4 (ENSCCRG00000034465) #30	map2k1 (ENSCCRG00000035016) #32	ENSCCRG00000009371 ##35	rab11a (ENSCCRG00000059058) #36	dennd4a (ENSCCRG00000020231) #37	SLC24A1 (ENSCCRG00000066083)	ints14 (ENSCCRG00000047151)	hacd3 (ENSCCRG00000017852)	ppcdc (ENSCCRG00000018299)	ENSCCRG00000081007	arih1 (ENSCCRG00000025952)
Golden-line barbel	MODERN SPECIES	54	dennd11 (ENSSGRG00000021018)	ighmbp2 (ENSSGRG00000021054)	agk (ENSSGRG00000021061)	rapsn (ENSSGRG00000021063)	kbtbd4 (ENSSGRG00000021064)	ddb2 (ENSSGRG00000021066)	kif23 (ENSSGRG00000021128)	tle3a (ENSSGRG00000022755)	ENSSGRG00000025130	morf4l1 (ENSSGRG00000025132)	PIAS1 (ENSSGRG00000025330) #17	ENSSGRG00000025332 #17	skor1b (ENSSGRG00000025333) #18	zgc:162898 (ENSSGRG00000025335) #20	iqch (ENSSGRG00000025341) #21	aagab (ENSSGRG00000025352) #22	smad3b (ENSSGRG00000025385) #23	smad6b (ENSSGRG00000026221) #26	snapc5 (ENSSGRG00000026223) #31	LCTL (ENSSGRG00000026226) #28	zwilch (ENSSGRG00000026228) #29	rpl4 (ENSSGRG00000026237) #30	map2k1 (ENSSGRG00000026412) #32	ENSSGRG00000028343 ##35	rab11a (ENSSGRG00000028469) #36	dennd4a (ENSSGRG00000028490) #37	SLC24A1 (ENSSGRG00000029751)	ints14 (ENSSGRG00000029760)	hacd3 (ENSSGRG00000029894)	ppcdc (ENSSGRG00000029905)	ENSSGRG00000029906
Cyprininae	ANCESTRAL SPECIES	74								ENSGT01030000234519.e.b.j.b.a.b	ENSGT00940000157475.s.b.b	ENSGT01030000235447	ENSGT00950000182965.a.b.a.a.c	ENSGT01030000234539.a.a.b.a.b.b.a #17	ENSGT00940000158440.g.b.b #18	ENSGT00390000015942 #20	ENSGT00390000008908.b #21	ENSGT00390000007218.r #22	ENSGT00940000153499.b.b.d.a.b.i.a #23	ENSGT00940000158146.b.e #26	ENSGT00390000010331.m #31	ENSGT00940000157369.a.d #28	ENSGT00390000013696 #29	ENSGT00390000018145.e #30	ENSGT00940000153487.b.b.t #32	ENSGT00940000155333.A.b.a ##35	ENSGT00940000154914.ub #36	ENSGT00940000155836.B.d #37	ENSGT01030000234532.B.e.b.f.a	ENSGT00390000009486.f	ENSGT00530000062962.b.a.f.b	ENSGT00440000038107.p	ENSGT00940000169185.b
Cyprininae_a	ANCESTRAL SPECIES	15	ENSGT00590000083189.c.a	ENSGT00940000154961.p	ENSGT00930000151035.a.a	ENSGT00390000016785.f	ENSGT00940000158775.i	ENSGT00510000047881.e	ENSGT00940000155837.q	ENSGT01030000234519.e.b.j.b.a.b	ENSGT00940000157475.s.b.b	ENSGT01030000235447.a	ENSGT00950000182965.a.b.a.a.c	ENSGT01030000234539.a.a.b.a.b.b.a #17	ENSGT00940000158440.g.b.b #18	ENSGT00390000015942 #20	ENSGT00390000008908.b #21	ENSGT00390000007218.r #22	ENSGT00940000153499.b.b.d.a.b.i.a #23	ENSGT00940000158146.b.e #26	ENSGT00390000010331.m #31	ENSGT00940000157369.a.d #28	ENSGT00390000013696.e #29	ENSGT00390000018145.e #30	ENSGT00940000153487.b.b.t #32	ENSGT00940000155333.A.b.a ##35	ENSGT00940000154914.ub #36	ENSGT00940000155836.B.d #37	ENSGT01030000234532.B.e.b.f.a	ENSGT00390000009486.f	ENSGT00530000062962.b.a.f.b	ENSGT00440000038107.p	ENSGT00940000169185.b
Golden-line barbel	MODERN SPECIES	224	dennd11 (ENSSGRG00000051588)	agk (ENSSGRG00000051590)	ENSSGRG00000051614	rapsn (ENSSGRG00000051616)	kbtbd4 (ENSSGRG00000051617)	ddb2 (ENSSGRG00000051625)	kif23 (ENSSGRG00000051628)	ENSSGRG00000051635	tle3a (ENSSGRG00000051652)	ENSSGRG00000053204	morf4l1 (ENSSGRG00000053205)	ENSSGRG00000053206	ENSSGRG00000053214 #17	zgc:162898 (ENSSGRG00000053314) #20	iqch (ENSSGRG00000053315) #21	aagab (ENSSGRG00000053318) #22	ENSSGRG00000053321 #23	smad6b (ENSSGRG00000053322) #26	snapc5 (ENSSGRG00000053323) #31	LCTL (ENSSGRG00000053324) #28	zwilch (ENSSGRG00000053327) #29	rpl4 (ENSSGRG00000053329) #30	map2k1 (ENSSGRG00000053371) #32	ENSSGRG00000053461 ##35	rab11a (ENSSGRG00000053474) #36	dennd4a (ENSSGRG00000053530) #37	SLC24A1 (ENSSGRG00000053777)	ints14 (ENSSGRG00000053784)	hacd3 (ENSSGRG00000053825)	ppcdc (ENSSGRG00000053835)
Common carp reference	MODERN SPECIES	19	wee2 (ENSCCRG00000018908)	dennd11 (ENSCCRG00000018949)	agk (ENSCCRG00000019050)	ighmbp2 (ENSCCRG00000068382)	ENSCCRG00000019411	rapsn (ENSCCRG00000018870)	kbtbd4 (ENSCCRG00000057703)	ddb2 (ENSCCRG00000061260)	kif23 (ENSCCRG00000015859)	tle3a (ENSCCRG00000030091)	ENSCCRG00000076672	morf4l1 (ENSCCRG00000043359)	PIAS1 (ENSCCRG00000030976) #17	skor1b (ENSCCRG00000014176) #18	iqch (ENSCCRG00000077345) #21	aagab (ENSCCRG00000016912) #22	smad3b (ENSCCRG00000067387) #23	smad6b (ENSCCRG00000017061) #26	snapc5 (ENSCCRG00000078719) #31	LCTL (ENSCCRG00000017070) #28	zwilch (ENSCCRG00000034439) #29	map2k1 (ENSCCRG00000077344) #32	ENSCCRG00000073950 ##35	rab11a (ENSCCRG00000009402) #36	dennd4a (ENSCCRG00000009528) #37	ENSCCRG00000072431	SLC24A1 (ENSCCRG00000009282)	ints14 (ENSCCRG00000017792)	hacd3 (ENSCCRG00000047136)	ppcdc (ENSCCRG00000072999)	ENSCCRG00000071734
Goldfish	MODERN SPECIES	9	ENSCARG00000016880	rapsn (ENSCARG00000016874)	kbtbd4 (ENSCARG00000016868)	ddb2 (ENSCARG00000016846)	paqr5a (ENSCARG00000016813)	kif23 (ENSCARG00000015149)	ENSCARG00000015092	tle3a (ENSCARG00000014265)	ENSCARG00000014215	morf4l1 (ENSCARG00000014135)	ENSCARG00000014119	PIAS1 (ENSCARG00000013991) #17	skor1b (ENSCARG00000013956) #18	zgc:162898 (ENSCARG00000013951) #20	iqch (ENSCARG00000013907) #21	aagab (ENSCARG00000013875) #22	smad3b (ENSCARG00000013852) #23	smad6b (ENSCARG00000013826) #26	snapc5 (ENSCARG00000013818) #31	LCTL (ENSCARG00000013798) #28	zwilch (ENSCARG00000013771) #29	rpl4 (ENSCARG00000013743) #30	map2k1 (ENSCARG00000013618) #32	ENSCARG00000013448 ##35	rab11a (ENSCARG00000013410) #36	dennd4a (ENSCARG00000012263) #37	SLC24A1 (ENSCARG00000012194)	ints14 (ENSCARG00000012147)	hacd3 (ENSCARG00000012002)	ppcdc (ENSCARG00000011991)	ENSCARG00000011988
Zebrafish	MODERN SPECIES	9	agk (ENSDARG00000009837)	ighmbp2 (ENSDARG00000069274)	rapsn (ENSDARG00000041133)	kbtbd4 (ENSDARG00000069271)	ddb2 (ENSDARG00000041140)	paqr5a (ENSDARG00000041145)	kif23 (ENSDARG00000014943)	tle3a (ENSDARG00000002787)	ENSDARG00000069250	morf4l1 (ENSDARG00000041155)	ENSDARG00000069246	PIAS1 (ENSDARG00000062445) #17	skor1b (ENSDARG00000062448) #18	C18H15orf61 (ENSDARG00000111588) #20	iqch (ENSDARG00000015476) #21	aagab (ENSDARG00000041170) #22	smad3b (ENSDARG00000010207) #23	smad6b (ENSDARG00000031763) #26	snapc5 (ENSDARG00000062476) #31	LCTL (ENSDARG00000016337) #28	zwilch (ENSDARG00000057100) #29	rpl4 (ENSDARG00000041182) #30	map2k1 (ENSDARG00000007825) #32	ENSDARG00000062686 ##35	rab11a (ENSDARG00000041450) #36	ENSDARG00000069189	ENSDARG00000092535	dennd4a (ENSDARG00000062721) #37	SLC24A1 (ENSDARG00000041431)	ints14 (ENSDARG00000041429)	hacd3 (ENSDARG00000016038)
Clupeiformes	ANCESTRAL SPECIES	358					ENSGT01030000234519.e.b.i.a	ENSGT00940000157475.s.b	ENSGT01030000235447	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.h #18	ENSGT01030000234518.B.a.b.a.b.j	ENSGT01030000234539.a.a.b.a.b.a.a #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.b #23	ENSGT00940000158146.b #26
Atlantic herring	MODERN SPECIES	19	ENSCHAG00000020745	ENSCHAG00000020757	ENSCHAG00000020766	ENSCHAG00000020773	ENSCHAG00000020858	vwf (ENSCHAG00000021723)	TLE3 (ENSCHAG00000022577)	ENSCHAG00000023324	ENSCHAG00000023330	morf4l1 (ENSCHAG00000023342)	ENSCHAG00000023614	PIAS1 (ENSCHAG00000023617) #17	skor1b (ENSCHAG00000023652) #18	zgc:162898 (ENSCHAG00000023666) #20	iqch (ENSCHAG00000023667) #21	aagab (ENSCHAG00000023674) #22	SMAD3 (ENSCHAG00000023688) #23	ENSCHAG00000023724	smad6b (ENSCHAG00000023725) #26	ENSCHAG00000023728	smad6b (ENSCHAG00000023735) #26	map2k1 (ENSCHAG00000023747) #32	rpl4 (ENSCHAG00000023757) #30	zwilch (ENSCHAG00000000117) #29	LCTL (ENSCHAG00000000142) #28	snapc5 (ENSCHAG00000000160) #31	map2k1 (ENSCHAG00000000220) #32	ENSCHAG00000000584 ##35	rab11a (ENSCHAG00000002433) #36	dennd4a (ENSCHAG00000003270) #37	SLC24A1 (ENSCHAG00000003677)
Euteleosteomorpha	ANCESTRAL SPECIES	1	ENSGT00390000018587.f	ENSGT00440000033504.A	ENSGT00940000165330	ENSGT00940000157760.g.b	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT01030000234519.e.b.l	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o.f	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Tetraodontidae	ANCESTRAL SPECIES	11	ENSGT00940000164955.b	ENSGT00390000010968.a	ENSGT00390000017767.a.b	ENSGT00940000160974.b.c	ENSGT00510000048454	ENSGT00390000016785.c	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o.e.a	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b.p #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Tetraodon	MODERN SPECIES	4	OAZ2 (ENSTNIG00000008443)	ENSTNIG00000000287	ENSTNIG00000001255	MYO9A (ENSTNIG00000008442)	ENSTNIG00000002358	CERK (ENSTNIG00000008441)	ENSTNIG00000000775	GRAMD4 (ENSTNIG00000008440)	drd4a (ENSTNIG00000008439)	ENSTNIG00000008438	kif23 (ENSTNIG00000008437)	TLE3 (ENSTNIG00000008436)	morf4l1 (ENSTNIG00000008435)	PIAS1 (ENSTNIG00000008434) #17	skor1b (ENSTNIG00000001504) #18	aagab (ENSTNIG00000008433) #22	smad3b (ENSTNIG00000008432) #23	smad6b (ENSTNIG00000008431) #26	LCTL (ENSTNIG00000008430) #28	zwilch (ENSTNIG00000008429) #29	rpl4 (ENSTNIG00000008428) #30	map2k1 (ENSTNIG00000008427) #32	ENSTNIG00000008426 ##35	ENSTNIG00000008425 ##37	SLC24A1 (ENSTNIG00000008424)	ints14 (ENSTNIG00000008423)	hacd3 (ENSTNIG00000008422)	ppcdc (ENSTNIG00000008421)	arih1 (ENSTNIG00000008420)	stoml1 (ENSTNIG00000008419)	cyp11a1.1 (ENSTNIG00000008418)
Fugu	MODERN SPECIES	21	CERK (ENSTRUG00000015494)	ENSTRUG00000031619	GRAMD4 (ENSTRUG00000015437)	ENSTRUG00000025260	drd4a (ENSTRUG00000015396)	ENSTRUG00000015338	rapsn (ENSTRUG00000015311)	kbtbd4 (ENSTRUG00000023881)	ENSTRUG00000023761	ddb2 (ENSTRUG00000015270)	kif23 (ENSTRUG00000015223)	TLE3 (ENSTRUG00000015125)	morf4l1 (ENSTRUG00000015077)	skor1b (ENSTRUG00000014982) #18	zgc:162898 (ENSTRUG00000020437) #20	aagab (ENSTRUG00000014949) #22	smad3b (ENSTRUG00000014802) #23	smad6b (ENSTRUG00000021541) #26	snapc5 (ENSTRUG00000020463) #31	LCTL (ENSTRUG00000014732) #28	zwilch (ENSTRUG00000021693) #29	rpl4 (ENSTRUG00000014667) #30	map2k1 (ENSTRUG00000014529) #32	ENSTRUG00000014394 ##35	ENSTRUG00000014237 ##37	SLC24A1 (ENSTRUG00000014175)	ints14 (ENSTRUG00000014091)	hacd3 (ENSTRUG00000031290)	ppcdc (ENSTRUG00000014075)	ENSTRUG00000022549	arih1 (ENSTRUG00000013998)
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o.f	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	1729																ENSLBEG00000017827 #22	smad3b (ENSLBEG00000017843) #23
Ballan wrasse	MODERN SPECIES	40	gatd1 (ENSLBEG00000014333)	chid1 (ENSLBEG00000014374)	ighmbp2 (ENSLBEG00000014501)	ENSLBEG00000014647	rapsn (ENSLBEG00000014666)	kbtbd4 (ENSLBEG00000014698)	ENSLBEG00000014710	ddb2 (ENSLBEG00000014759)	kif23 (ENSLBEG00000014888)	TLE3 (ENSLBEG00000015053)	morf4l1 (ENSLBEG00000015124)	PIAS1 (ENSLBEG00000015142) #17	skor1b (ENSLBEG00000015181) #18	zgc:162898 (ENSLBEG00000015192) #20	iqch (ENSLBEG00000015224) #21	aagab (ENSLBEG00000015299) #22	smad3b (ENSLBEG00000015322) #23	smad6b (ENSLBEG00000015360) #26	snapc5 (ENSLBEG00000015381) #31	LCTL (ENSLBEG00000015396) #28	zwilch (ENSLBEG00000015453) #29	rpl4 (ENSLBEG00000015490) #30	map2k1 (ENSLBEG00000015601) #32	ENSLBEG00000015733 ##35	ENSLBEG00000015940 ##37	SLC24A1 (ENSLBEG00000016014)	SLC24A1 (ENSLBEG00000016038)	ints14 (ENSLBEG00000016057)	hacd3 (ENSLBEG00000016087)	ppcdc (ENSLBEG00000016135)	ENSLBEG00000016174
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o.f	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Perciformes	ANCESTRAL SPECIES	7	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o.f	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00940000157760.g.b	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00510000047881	ENSGT00940000155837.o.f	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Lumpfish	MODERN SPECIES	21	cd151 (ENSCLMG00005018550)	gatd1 (ENSCLMG00005018556)	chid1 (ENSCLMG00005018557)	ighmbp2 (ENSCLMG00005018566)	ENSCLMG00005018573	rapsn (ENSCLMG00005018574)	kbtbd4 (ENSCLMG00005018576)	ddb2 (ENSCLMG00005018579)	kif23 (ENSCLMG00005018591)	TLE3 (ENSCLMG00005019055)	morf4l1 (ENSCLMG00005019604)	PIAS1 (ENSCLMG00005019623) #17	skor1b (ENSCLMG00005019721) #18	zgc:162898 (ENSCLMG00005019722) #20	iqch (ENSCLMG00005019726) #21	aagab (ENSCLMG00005019765) #22	smad3b (ENSCLMG00005019769) #23	smad6b (ENSCLMG00005019893) #26	snapc5 (ENSCLMG00005019894) #31	LCTL (ENSCLMG00005019896) #28	zwilch (ENSCLMG00005019897) #29	rpl4 (ENSCLMG00005019898) #30	RPL4 (ENSCLMG00005019911) #30	map2k1 (ENSCLMG00005000174) #32	ENSCLMG00005000242 ##35	ENSCLMG00005000266 ##37	SLC24A1 (ENSCLMG00005000323)	ints14 (ENSCLMG00005000331)	hacd3 (ENSCLMG00005000359)	ppcdc (ENSCLMG00005000450)	ENSCLMG00005000456
Stickleback	MODERN SPECIES	14	ENSGACG00000005397	cd151 (ENSGACG00000005365)	gatd1 (ENSGACG00000005355)	chid1 (ENSGACG00000005331)	ighmbp2 (ENSGACG00000005293)	rapsn (ENSGACG00000005265)	kbtbd4 (ENSGACG00000005255)	ddb2 (ENSGACG00000005252)	kif23 (ENSGACG00000005226)	TLE3 (ENSGACG00000005213)	morf4l1 (ENSGACG00000005181)	PIAS1 (ENSGACG00000005176) #17	skor1b (ENSGACG00000005171) #18	zgc:162898 (ENSGACG00000005167) #20	iqch (ENSGACG00000005158) #21	aagab (ENSGACG00000005119) #22	smad3b (ENSGACG00000005092) #23	smad6b (ENSGACG00000005085) #26	snapc5 (ENSGACG00000005078) #31	LCTL (ENSGACG00000005057) #28	zwilch (ENSGACG00000005043) #29	rpl4 (ENSGACG00000004968) #30	map2k1 (ENSGACG00000004903) #32	ENSGACG00000004885 ##35	ENSGACG00000004867 ##37	SLC24A1 (ENSGACG00000004859)	ints14 (ENSGACG00000004827)	hacd3 (ENSGACG00000004806)	ppcdc (ENSGACG00000004795)	arih1 (ENSGACG00000004772)	hexa (ENSGACG00000004744)
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o.f	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Channel bull blenny	MODERN SPECIES	20	cd151 (ENSCGOG00000018619)	gatd1 (ENSCGOG00000018608)	chid1 (ENSCGOG00000018514)	ighmbp2 (ENSCGOG00000018334)	rapsn (ENSCGOG00000018322)	kbtbd4 (ENSCGOG00000018314)	ENSCGOG00000018313	ddb2 (ENSCGOG00000018311)	kif23 (ENSCGOG00000017942)	TLE3 (ENSCGOG00000017111)	morf4l1 (ENSCGOG00000016522)	PIAS1 (ENSCGOG00000015764) #17	skor1b (ENSCGOG00000015746) #18	zgc:162898 (ENSCGOG00000015744) #20	iqch (ENSCGOG00000015654) #21	aagab (ENSCGOG00000015616) #22	smad3b (ENSCGOG00000014715) #23	smad6b (ENSCGOG00000014702) #26	snapc5 (ENSCGOG00000014701) #31	LCTL (ENSCGOG00000014696) #28	zwilch (ENSCGOG00000014660) #29	rpl4 (ENSCGOG00000014628) #30	map2k1 (ENSCGOG00000012783) #32	ENSCGOG00000012718 ##35	ENSCGOG00000011005 ##37	SLC24A1 (ENSCGOG00000010978)	ints14 (ENSCGOG00000010944)	hacd3 (ENSCGOG00000010806)	ppcdc (ENSCGOG00000010802)	ENSCGOG00000010801	arih1 (ENSCGOG00000010759)
Pike perch	MODERN SPECIES	6	gatd1 (ENSSLUG00000001189)	chid1 (ENSSLUG00000001180)	ighmbp2 (ENSSLUG00000001171)	ENSSLUG00000001166	rapsn (ENSSLUG00000001159)	kbtbd4 (ENSSLUG00000001154)	ENSSLUG00000001150	ddb2 (ENSSLUG00000001144)	kif23 (ENSSLUG00000000973)	TLE3 (ENSSLUG00000000698)	morf4l1 (ENSSLUG00000000519)	PIAS1 (ENSSLUG00000000454) #17	skor1b (ENSSLUG00000000431) #18	zgc:162898 (ENSSLUG00000000425) #20	iqch (ENSSLUG00000000409) #21	aagab (ENSSLUG00000000395) #22	smad3b (ENSSLUG00000000353) #23	smad6b (ENSSLUG00000000337) #26	snapc5 (ENSSLUG00000000334) #31	LCTL (ENSSLUG00000000329) #28	zwilch (ENSSLUG00000000305) #29	rpl4 (ENSSLUG00000000272) #30	map2k1 (ENSSLUG00000000165) #32	ENSSLUG00000019161 ##35	ENSSLUG00000018947 ##37	SLC24A1 (ENSSLUG00000018879)	ints14 (ENSSLUG00000018842)	hacd3 (ENSSLUG00000018784)	ppcdc (ENSSLUG00000018769)	ENSSLUG00000018766	arih1 (ENSSLUG00000018735)
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o.f	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o.f	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
European seabass	MODERN SPECIES	19	cd151 (ENSDLAG00005010736)	gatd1 (ENSDLAG00005010725)	chid1 (ENSDLAG00005010232)	ighmbp2 (ENSDLAG00005010154)	ENSDLAG00005031626	kbtbd4 (ENSDLAG00005026445)	ENSDLAG00005010122	kif23 (ENSDLAG00005007984)	ddb2 (ENSDLAG00005010094)	ENSDLAG00005006914	morf4l1 (ENSDLAG00005006479)	ENSDLAG00005006449	PIAS1 (ENSDLAG00005006027) #17	skor1b (ENSDLAG00005005972) #18	zgc:162898 (ENSDLAG00005031120) #20	aagab (ENSDLAG00005005902) #22	smad3b (ENSDLAG00005005574) #23	smad6b (ENSDLAG00005033513) #26	snapc5 (ENSDLAG00005005541) #31	LCTL (ENSDLAG00005005497) #28	zwilch (ENSDLAG00005005332) #29	rpl4 (ENSDLAG00005005228) #30	map2k1 (ENSDLAG00005005002) #32	ENSDLAG00005004815 ##35	ENSDLAG00005004333 ##37	ENSDLAG00005004243	ENSDLAG00005004229	hacd3 (ENSDLAG00005004092)	ints14 (ENSDLAG00005004123)	ENSDLAG00005004072	ENSDLAG00005033300
Large yellow croaker	MODERN SPECIES	492	chid1 (ENSLCRG00005007309)	ighmbp2 (ENSLCRG00005007561)	ENSLCRG00005007582	rapsn (ENSLCRG00005007583)	kbtbd4 (ENSLCRG00005007586)	ENSLCRG00005007587	ddb2 (ENSLCRG00005007589)	kif23 (ENSLCRG00005007598)	TLE3 (ENSLCRG00005007697)	morf4l1 (ENSLCRG00005008690)	PIAS1 (ENSLCRG00005008812) #17	ENSLCRG00005008944 #17	skor1b (ENSLCRG00005008945) #18	zgc:162898 (ENSLCRG00005008946) #20	iqch (ENSLCRG00005008950) #21	aagab (ENSLCRG00005008957) #22	smad3b (ENSLCRG00005008972) #23	smad6b (ENSLCRG00005008982) #26	snapc5 (ENSLCRG00005008983) #31	LCTL (ENSLCRG00005008987) #28	zwilch (ENSLCRG00005008990) #29	rpl4 (ENSLCRG00005008994) #30	map2k1 (ENSLCRG00005009481) #32	ENSLCRG00005009493 ##35	ENSLCRG00005009722 ##37	SLC24A1 (ENSLCRG00005009980)	SLC24A1 (ENSLCRG00005009983)	ints14 (ENSLCRG00005009985)	hacd3 (ENSLCRG00005009991)	ppcdc (ENSLCRG00005010030)	ENSLCRG00005010032
Gilthead seabream	MODERN SPECIES	22	gatd1 (ENSSAUG00010015062)	chid1 (ENSSAUG00010014549)	ighmbp2 (ENSSAUG00010014523)	rapsn (ENSSAUG00010014517)	kbtbd4 (ENSSAUG00010014515)	ENSSAUG00010014514	ddb2 (ENSSAUG00010014512)	kif23 (ENSSAUG00010013254)	TLE3 (ENSSAUG00010012732)	morf4l1 (ENSSAUG00010011733)	kif23 (ENSSAUG00010011708)	PIAS1 (ENSSAUG00010011693) #17	skor1b (ENSSAUG00010011689) #18	zgc:162898 (ENSSAUG00010011688) #20	iqch (ENSSAUG00010011685) #21	aagab (ENSSAUG00010011683) #22	smad3b (ENSSAUG00010011625) #23	smad6b (ENSSAUG00010011616) #26	snapc5 (ENSSAUG00010011612) #31	LCTL (ENSSAUG00010011608) #28	zwilch (ENSSAUG00010011149) #29	rpl4 (ENSSAUG00010011110) #30	map2k1 (ENSSAUG00010010913) #32	ENSSAUG00010009554 ##35	ENSSAUG00010009514 ##37	SLC24A1 (ENSSAUG00010009511)	SLC24A1 (ENSSAUG00010009505)	ints14 (ENSSAUG00010009496)	hacd3 (ENSSAUG00010009487)	ppcdc (ENSSAUG00010009485)	ENSSAUG00010009484
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Carangaria	ANCESTRAL SPECIES	6	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Carangaria_A	ANCESTRAL SPECIES		ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00940000181062	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Barramundi perch	MODERN SPECIES	17	chid1 (ENSLCAG00010013894)	ighmbp2 (ENSLCAG00010013871)	ENSLCAG00010013858	rapsn (ENSLCAG00010013851)	kbtbd4 (ENSLCAG00010013848)	ENSLCAG00010013847	ddb2 (ENSLCAG00010013840)	kif23 (ENSLCAG00010013211)	TLE3 (ENSLCAG00010012751)	ENSLCAG00010012673	morf4l1 (ENSLCAG00010012622)	PIAS1 (ENSLCAG00010012593) #17	skor1b (ENSLCAG00010012584) #18	zgc:162898 (ENSLCAG00010012578) #20	iqch (ENSLCAG00010012573) #21	aagab (ENSLCAG00010012566) #22	smad3b (ENSLCAG00010012407) #23	smad6b (ENSLCAG00010012358) #26	snapc5 (ENSLCAG00010012353) #31	LCTL (ENSLCAG00010012337) #28	zwilch (ENSLCAG00010012324) #29	rpl4 (ENSLCAG00010012306) #30	map2k1 (ENSLCAG00010011873) #32	ENSLCAG00010011758 ##35	ENSLCAG00010011752	ENSLCAG00010011723 ##37	SLC24A1 (ENSLCAG00010011706)	ints14 (ENSLCAG00010011694)	hacd3 (ENSLCAG00010011684)	ppcdc (ENSLCAG00010011677)	ENSLCAG00010011674
Seriola	ANCESTRAL SPECIES	5	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00940000181062	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Yellowtail amberjack	MODERN SPECIES	3044	cd151 (ENSSLDG00000023016)	gatd1 (ENSSLDG00000023050)	chid1 (ENSSLDG00000023101)	ighmbp2 (ENSSLDG00000023119)	rapsn (ENSSLDG00000023154)	kbtbd4 (ENSSLDG00000023182)	ddb2 (ENSSLDG00000023204)	kif23 (ENSSLDG00000023233)	TLE3 (ENSSLDG00000023328)	ENSSLDG00000023373	morf4l1 (ENSSLDG00000023383)	PIAS1 (ENSSLDG00000023434) #17	skor1b (ENSSLDG00000023468) #18	zgc:162898 (ENSSLDG00000023483) #20	iqch (ENSSLDG00000023494) #21	aagab (ENSSLDG00000023521) #22	smad3b (ENSSLDG00000023534) #23	smad6b (ENSSLDG00000023557) #26	snapc5 (ENSSLDG00000023570) #31	LCTL (ENSSLDG00000023587) #28	zwilch (ENSSLDG00000023641) #29	rpl4 (ENSSLDG00000023658) #30	map2k1 (ENSSLDG00000023678) #32	ENSSLDG00000023706 ##35	ENSSLDG00000023736 ##37	SLC24A1 (ENSSLDG00000023774)	ENSSLDG00000023813	ints14 (ENSSLDG00000023818)	hacd3 (ENSSLDG00000023846)	ppcdc (ENSSLDG00000023867)	ENSSLDG00000023878
Greater amberjack	MODERN SPECIES	82					rapsn (ENSSDUG00000007217)	kbtbd4 (ENSSDUG00000007244)	ddb2 (ENSSDUG00000007314)	kif23 (ENSSDUG00000007360)	TLE3 (ENSSDUG00000007577)	ENSSDUG00000007621	morf4l1 (ENSSDUG00000007640)	PIAS1 (ENSSDUG00000007716) #17	skor1b (ENSSDUG00000007810) #18	zgc:162898 (ENSSDUG00000007821) #20	iqch (ENSSDUG00000007847) #21	aagab (ENSSDUG00000007934) #22	smad3b (ENSSDUG00000007957) #23	smad6b (ENSSDUG00000007977) #26	snapc5 (ENSSDUG00000008001) #31	LCTL (ENSSDUG00000008008) #28	zwilch (ENSSDUG00000008041) #29	RPL4 (ENSSDUG00000008061) #30	map2k1 (ENSSDUG00000008098) #32	ENSSDUG00000008123 ##35	ENSSDUG00000008166 ##37	SLC24A1 (ENSSDUG00000008265)	SLC24A1 (ENSSDUG00000008280)	ints14 (ENSSDUG00000008301)	hacd3 (ENSSDUG00000008342)	ppcdc (ENSSDUG00000008384)	ENSSDUG00000008409
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Tongue sole	MODERN SPECIES	16	ENSCSEG00000006736 ##37	ENSCSEG00000006816 ##35	map2k1 (ENSCSEG00000006882) #32	rpl4 (ENSCSEG00000006912) #30	zwilch (ENSCSEG00000006998) #29	LCTL (ENSCSEG00000007031) #28	snapc5 (ENSCSEG00000007049) #31	smad6b (ENSCSEG00000007053) #26	smad3b (ENSCSEG00000007063) #23	TLE3 (ENSCSEG00000007088)	morf4l1 (ENSCSEG00000007129)	PIAS1 (ENSCSEG00000007150) #17	skor1b (ENSCSEG00000007194) #18	zgc:162898 (ENSCSEG00000007204) #20	iqch (ENSCSEG00000007210) #21	aagab (ENSCSEG00000007229) #22	ENSCSEG00000007234	kif23 (ENSCSEG00000007240)	ddb2 (ENSCSEG00000007319)	ENSCSEG00000007333	kbtbd4 (ENSCSEG00000007357)	rapsn (ENSCSEG00000007367)	ENSCSEG00000007385	ighmbp2 (ENSCSEG00000007513)	chid1 (ENSCSEG00000007553)	gatd1 (ENSCSEG00000007576)	cd151 (ENSCSEG00000007599)	cracr2b (ENSCSEG00000007618)	tmem138 (ENSCSEG00000007639)	tmem258 (ENSCSEG00000007655)	MYRF (ENSCSEG00000007663)
Turbot	MODERN SPECIES	1	gatd1 (ENSSMAG00000013666)	chid1 (ENSSMAG00000013674)	ighmbp2 (ENSSMAG00000013687)	ENSSMAG00000013697	rapsn (ENSSMAG00000013780)	kbtbd4 (ENSSMAG00000013783)	ENSSMAG00000013793	ddb2 (ENSSMAG00000013800)	kif23 (ENSSMAG00000013831)	ENSSMAG00000013997	morf4l1 (ENSSMAG00000014185)	PIAS1 (ENSSMAG00000014246) #17	skor1b (ENSSMAG00000014267) #18	zgc:162898 (ENSSMAG00000014311) #20	iqch (ENSSMAG00000014326) #21	aagab (ENSSMAG00000014364) #22	smad3b (ENSSMAG00000014385) #23	smad6b (ENSSMAG00000014437) #26	snapc5 (ENSSMAG00000014452) #31	LCTL (ENSSMAG00000014482) #28	zwilch (ENSSMAG00000014527) #29	rpl4 (ENSSMAG00000014547) #30	map2k1 (ENSSMAG00000014654) #32	ENSSMAG00000028102	ENSSMAG00000014692 ##35	ENSSMAG00000014740 ##37	SLC24A1 (ENSSMAG00000014916)	SLC24A1 (ENSSMAG00000014927)	ints14 (ENSSMAG00000014965)	hacd3 (ENSSMAG00000015006)	ppcdc (ENSSMAG00000015044)
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Climbing perch	MODERN SPECIES	19	chid1 (ENSATEG00000010306)	ENSATEG00000010296	ighmbp2 (ENSATEG00000010246)	ENSATEG00000026938	rapsn (ENSATEG00000010221)	kbtbd4 (ENSATEG00000010209)	ENSATEG00000010195	ddb2 (ENSATEG00000010174)	kif23 (ENSATEG00000010066)	ENSATEG00000010004	morf4l1 (ENSATEG00000009987)	PIAS1 (ENSATEG00000009975) #17	skor1b (ENSATEG00000009950) #18	C15orf61 (ENSATEG00000028998) #20	iqch (ENSATEG00000009880) #21	aagab (ENSATEG00000009864) #22	smad3b (ENSATEG00000009812) #23	smad6b (ENSATEG00000009784) #26	snapc5 (ENSATEG00000009776) #31	LCTL (ENSATEG00000009711) #28	zwilch (ENSATEG00000009702) #29	rpl4 (ENSATEG00000009670) #30	map2k1 (ENSATEG00000009613) #32	ENSATEG00000009531 ##35	ENSATEG00000009439 ##37	SLC24A1 (ENSATEG00000009377)	ints14 (ENSATEG00000009319)	hacd3 (ENSATEG00000025872)	ppcdc (ENSATEG00000029359)	ENSATEG00000009236	arih1 (ENSATEG00000009186)
Siamese fighting fish	MODERN SPECIES	17	gatd1 (ENSBSLG00000019758)	chid1 (ENSBSLG00000019714)	ighmbp2 (ENSBSLG00000019655)	ENSBSLG00000019652	rapsn (ENSBSLG00000019644)	kbtbd4 (ENSBSLG00000019638)	ENSBSLG00000019633	ddb2 (ENSBSLG00000019623)	kif23 (ENSBSLG00000018655)	TLE3 (ENSBSLG00000017067)	morf4l1 (ENSBSLG00000016545)	PIAS1 (ENSBSLG00000016477) #17	skor1b (ENSBSLG00000016468) #18	zgc:162898 (ENSBSLG00000016466) #20	iqch (ENSBSLG00000016456) #21	aagab (ENSBSLG00000016446) #22	smad3b (ENSBSLG00000016420) #23	smad6b (ENSBSLG00000016413) #26	snapc5 (ENSBSLG00000016407) #31	LCTL (ENSBSLG00000016343) #28	zwilch (ENSBSLG00000016330) #29	rpl4 (ENSBSLG00000016291) #30	map2k1 (ENSBSLG00000015609) #32	ENSBSLG00000015132 ##35	ENSBSLG00000015093 ##37	SLC24A1 (ENSBSLG00000015079)	ints14 (ENSBSLG00000014980)	hacd3 (ENSBSLG00000014925)	ppcdc (ENSBSLG00000014843)	ENSBSLG00000014828	arih1 (ENSBSLG00000014624)
Zig-zag eel	MODERN SPECIES	20	gatd1 (ENSMAMG00000005425)	chid1 (ENSMAMG00000005523)	ighmbp2 (ENSMAMG00000005532)	rapsn (ENSMAMG00000005567)	kbtbd4 (ENSMAMG00000027596)	ENSMAMG00000024728	ddb2 (ENSMAMG00000005596)	kif23 (ENSMAMG00000005646)	ENSMAMG00000005747	morf4l1 (ENSMAMG00000005793)	ENSMAMG00000024365	PIAS1 (ENSMAMG00000005844) #17	skor1b (ENSMAMG00000005854) #18	zgc:162898 (ENSMAMG00000005865) #20	iqch (ENSMAMG00000005883) #21	aagab (ENSMAMG00000005930) #22	smad3b (ENSMAMG00000005952) #23	smad6b (ENSMAMG00000005972) #26	ENSMAMG00000024281	snapc5 (ENSMAMG00000005992) #31	LCTL (ENSMAMG00000006001) #28	zwilch (ENSMAMG00000006031) #29	rpl4 (ENSMAMG00000006058) #30	map2k1 (ENSMAMG00000006146) #32	ENSMAMG00000006178 ##35	ENSMAMG00000006239 ##37	SLC24A1 (ENSMAMG00000006350)	ints14 (ENSMAMG00000006472)	hacd3 (ENSMAMG00000006428)	ppcdc (ENSMAMG00000006514)	ENSMAMG00000006536
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT01060000249026	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.d	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT01060000249026	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.d	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Aplocheiloidei	ANCESTRAL SPECIES	1	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT01060000249026	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.d	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Turquoise killifish	MODERN SPECIES	1622	chid1 (ENSNFUG00015006583)	ighmbp2 (ENSNFUG00015006609)	ENSNFUG00015006797	rapsn (ENSNFUG00015006800)	KBTBD4 (ENSNFUG00015006805)	ENSNFUG00015006807	ddb2 (ENSNFUG00015006812)	kif23 (ENSNFUG00015006836)	TLE3 (ENSNFUG00015007251)	smad3b (ENSNFUG00015007897) #23	morf4l1 (ENSNFUG00015008050)	PIAS1 (ENSNFUG00015008137) #17	skor1b (ENSNFUG00015008209) #18	zgc:162898 (ENSNFUG00015008213) #20	iqch (ENSNFUG00015008218) #21	AAGAB (ENSNFUG00015008222) #22	smad6b (ENSNFUG00015008229) #26	ENSNFUG00015008231	ENSNFUG00015008234	snapc5 (ENSNFUG00015008236) #31	LCTL (ENSNFUG00015008241) #28	ZWILCH (ENSNFUG00015008272) #29	rpl4 (ENSNFUG00015008298) #30	MAP2K1 (ENSNFUG00015008325) #32	MEGF11 (ENSNFUG00015008461) ##35	DENND4A (ENSNFUG00015008588) ##37	SLC24A1 (ENSNFUG00015008646)	VWA9 (ENSNFUG00015008651)	hacd3 (ENSNFUG00015008677)	ppcdc (ENSNFUG00015008823)	ENSNFUG00015008829
Mangrove rivulus	MODERN SPECIES	6	gatd1 (ENSKMAG00000020360)	chid1 (ENSKMAG00000020332)	ighmbp2 (ENSKMAG00000020284)	ENSKMAG00000020264	rapsn (ENSKMAG00000020239)	kbtbd4 (ENSKMAG00000020215)	ENSKMAG00000020196	ddb2 (ENSKMAG00000020178)	kif23 (ENSKMAG00000020065)	TLE3 (ENSKMAG00000019987)	morf4l1 (ENSKMAG00000019932)	PIAS1 (ENSKMAG00000019888) #17	skor1b (ENSKMAG00000019852) #18	zgc:162898 (ENSKMAG00000019840) #20	iqch (ENSKMAG00000019782) #21	aagab (ENSKMAG00000019751) #22	smad3b (ENSKMAG00000019721) #23	smad6b (ENSKMAG00000019704) #26	snapc5 (ENSKMAG00000019691) #31	LCTL (ENSKMAG00000019610) #28	zwilch (ENSKMAG00000019558) #29	rpl4 (ENSKMAG00000019520) #30	map2k1 (ENSKMAG00000019462) #32	ENSKMAG00000019409 ##35	ENSKMAG00000019332 ##37	SLC24A1 (ENSKMAG00000019301)	ENSKMAG00000019281	ints14 (ENSKMAG00000019255)	hacd3 (ENSKMAG00000019204)	ppcdc (ENSKMAG00000019178)	ENSKMAG00000019164
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT01060000249026	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.d	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT01060000249026	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.d	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Poecilia	ANCESTRAL SPECIES	5	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT01060000249026	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.d	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
NAME_6	ANCESTRAL SPECIES	38	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT01060000249026	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.d	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Amazon molly	MODERN SPECIES	332	cd151 (ENSPFOG00000010899)	gatd1 (ENSPFOG00000010873)	chid1 (ENSPFOG00000010791)	ighmbp2 (ENSPFOG00000010607)	ENSPFOG00000010570	rapsn (ENSPFOG00000010493)	kbtbd4 (ENSPFOG00000010466)	ddb2 (ENSPFOG00000010390)	kif23 (ENSPFOG00000009992)	TLE3 (ENSPFOG00000009535)	morf4l1 (ENSPFOG00000009311)	PIAS1 (ENSPFOG00000009110) #17	skor1b (ENSPFOG00000009041) #18	zgc:162898 (ENSPFOG00000009031) #20	iqch (ENSPFOG00000008947) #21	aagab (ENSPFOG00000008893) #22	smad3b (ENSPFOG00000008802) #23	smad6b (ENSPFOG00000008775) #26	snapc5 (ENSPFOG00000021667) #31	LCTL (ENSPFOG00000008595) #28	zwilch (ENSPFOG00000008447) #29	rpl4 (ENSPFOG00000008365) #30	map2k1 (ENSPFOG00000008205) #32	ENSPFOG00000007620 ##35	ENSPFOG00000007336 ##37	SLC24A1 (ENSPFOG00000007134)	ENSPFOG00000023612	ints14 (ENSPFOG00000006991)	hacd3 (ENSPFOG00000006915)	ppcdc (ENSPFOG00000006856)	ENSPFOG00000006845
Sailfin molly	MODERN SPECIES	1411											morf4l1 (ENSPLAG00000007668)	PIAS1 (ENSPLAG00000007727) #17	skor1b (ENSPLAG00000007766) #18	zgc:162898 (ENSPLAG00000007775) #20	iqch (ENSPLAG00000007903) #21	aagab (ENSPLAG00000007922) #22	smad3b (ENSPLAG00000007952) #23
Guppy	MODERN SPECIES	458	gatd1 (ENSPREG00000011346)	chid1 (ENSPREG00000011264)	ighmbp2 (ENSPREG00000011223)	ENSPREG00000011207	rapsn (ENSPREG00000011191)	kbtbd4 (ENSPREG00000011179)	ENSPREG00000011171	ddb2 (ENSPREG00000011139)	kif23 (ENSPREG00000010939)	TLE3 (ENSPREG00000010877)	morf4l1 (ENSPREG00000010818)	PIAS1 (ENSPREG00000010768) #17	skor1b (ENSPREG00000010750) #18	zgc:162898 (ENSPREG00000010732) #20	iqch (ENSPREG00000010718) #21	aagab (ENSPREG00000010705) #22	smad3b (ENSPREG00000010683) #23	smad6b (ENSPREG00000010660) #26	snapc5 (ENSPREG00000010651) #31	LCTL (ENSPREG00000010570) #28	zwilch (ENSPREG00000010534) #29	rpl4 (ENSPREG00000010449) #30	map2k1 (ENSPREG00000010418) #32	ENSPREG00000010362 ##35	ENSPREG00000010304 ##37	ENSPREG00000010239	ints14 (ENSPREG00000010197)	hacd3 (ENSPREG00000010177)	ppcdc (ENSPREG00000010163)	ENSPREG00000010149	arih1 (ENSPREG00000010115)
Platyfish	MODERN SPECIES	11	gatd1 (ENSXMAG00000028803)	chid1 (ENSXMAG00000003714)	ighmbp2 (ENSXMAG00000003705)	ENSXMAG00000026603	ENSXMAG00000000599	kbtbd4 (ENSXMAG00000003696)	ENSXMAG00000023989	ddb2 (ENSXMAG00000003694)	kif23 (ENSXMAG00000003667)	TLE3 (ENSXMAG00000003621)	morf4l1 (ENSXMAG00000003604)	PIAS1 (ENSXMAG00000003583) #17	skor1b (ENSXMAG00000003579) #18	zgc:162898 (ENSXMAG00000022123) #20	iqch (ENSXMAG00000003568) #21	aagab (ENSXMAG00000003564) #22	smad3b (ENSXMAG00000003553) #23	smad6b (ENSXMAG00000003550) #26	snapc5 (ENSXMAG00000003549) #31	LCTL (ENSXMAG00000003540) #28	zwilch (ENSXMAG00000003532) #29	rpl4 (ENSXMAG00000029529) #30	map2k1 (ENSXMAG00000003499) #32	ENSXMAG00000003498 ##35	ENSXMAG00000003464 ##37	SLC24A1 (ENSXMAG00000015769)	ENSXMAG00000015778	ints14 (ENSXMAG00000015780)	hacd3 (ENSXMAG00000015797)	ppcdc (ENSXMAG00000015812)	ENSXMAG00000022800
NAME_4	ANCESTRAL SPECIES	114	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT01060000249026	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26
Sheepshead minnow	MODERN SPECIES	1118											morf4l1 (ENSCVAG00000007618)	PIAS1 (ENSCVAG00000007674) #17	skor1b (ENSCVAG00000007694) #18	zgc:162898 (ENSCVAG00000007700) #20	ENSCVAG00000007712	aagab (ENSCVAG00000007763) #22	smad3b (ENSCVAG00000007804) #23	smad6b (ENSCVAG00000007818) #26
Mummichog	MODERN SPECIES	282	chid1 (ENSFHEG00000021172)	ighmbp2 (ENSFHEG00000021211)	ENSFHEG00000021215	rapsn (ENSFHEG00000021237)	ENSFHEG00000021254	kbtbd4 (ENSFHEG00000021264)	ENSFHEG00000021282	ddb2 (ENSFHEG00000021285)	kif23 (ENSFHEG00000021477)	TLE3 (ENSFHEG00000021536)	morf4l1 (ENSFHEG00000021591)	ENSFHEG00000021615 #17	skor1b (ENSFHEG00000021633) #18	zgc:162898 (ENSFHEG00000021645) #20	iqch (ENSFHEG00000021713) #21	aagab (ENSFHEG00000021730) #22	smad3b (ENSFHEG00000021766) #23	smad6b (ENSFHEG00000021787) #26
Oryzias	ANCESTRAL SPECIES	16	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT01060000249026	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.d	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Oryzias_b	ANCESTRAL SPECIES		ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT01060000249026	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.d	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Indian medaka	MODERN SPECIES	15	gatd1 (ENSOMEG00000000503)	chid1 (ENSOMEG00000019221)	ighmbp2 (ENSOMEG00000019296)	ENSOMEG00000019319	rapsn (ENSOMEG00000019340)	kbtbd4 (ENSOMEG00000019350)	ENSOMEG00000019359	ddb2 (ENSOMEG00000019402)	kif23 (ENSOMEG00000019673)	TLE3 (ENSOMEG00000019731)	morf4l1 (ENSOMEG00000019799)	PIAS1 (ENSOMEG00000019860) #17	skor1b (ENSOMEG00000019886) #18	zgc:162898 (ENSOMEG00000019899) #20	iqch (ENSOMEG00000019948) #21	aagab (ENSOMEG00000019971) #22	smad3b (ENSOMEG00000020016) #23	smad6b (ENSOMEG00000020048) #26	ncalda (ENSOMEG00000020074)	ENSOMEG00000000761	ZNF706 (ENSOMEG00000020130)	ENSOMEG00000020153	pabpc1a (ENSOMEG00000020219)	rnf19a (ENSOMEG00000020280)	ENSOMEG00000020303	ENSOMEG00000020330	ENSOMEG00000020379	WDR26 (ENSOMEG00000020409)	zufsp (ENSOMEG00000020495)	ADCY3 (ENSOMEG00000020521)	cnot10 (ENSOMEG00000020550)
Javanese ricefish	MODERN SPECIES	20	cd151 (ENSOJAG00000007680)	chid1 (ENSOJAG00000007755)	ighmbp2 (ENSOJAG00000008377)	ENSOJAG00000008433	rapsn (ENSOJAG00000008442)	kbtbd4 (ENSOJAG00000008453)	ENSOJAG00000008474	ddb2 (ENSOJAG00000008503)	kif23 (ENSOJAG00000008816)	TLE3 (ENSOJAG00000011183)	morf4l1 (ENSOJAG00000012268)	PIAS1 (ENSOJAG00000012338) #17	skor1b (ENSOJAG00000012503) #18	zgc:162898 (ENSOJAG00000012513) #20	iqch (ENSOJAG00000012524) #21	aagab (ENSOJAG00000012590) #22	smad3b (ENSOJAG00000012829) #23	smad6b (ENSOJAG00000013057) #26	zwilch (ENSOJAG00000013246) #29	rpl4 (ENSOJAG00000013399) #30	map2k1 (ENSOJAG00000013527) #32	ENSOJAG00000013786 ##35	ENSOJAG00000014599 ##37	SLC24A1 (ENSOJAG00000014806)	ENSOJAG00000014816	ints14 (ENSOJAG00000014921)	hacd3 (ENSOJAG00000015219)	ppcdc (ENSOJAG00000015440)	ENSOJAG00000015447	arih1 (ENSOJAG00000015474)	hexa (ENSOJAG00000015950)
Oryzias_a	ANCESTRAL SPECIES	1	ENSGT00940000157760.g.b	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT01060000249026	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.d	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Japanese Medaka HdrR	MODERN SPECIES	20	cd151 (ENSORLG00000006486)	gatd1 (ENSORLG00000006504)	chid1 (ENSORLG00000006537)	ighmbp2 (ENSORLG00000006561)	ENSORLG00000006610	rapsn (ENSORLG00000006635)	kbtbd4 (ENSORLG00000006648)	ENSORLG00000029307	ddb2 (ENSORLG00000006657)	kif23 (ENSORLG00000006689)	TLE3 (ENSORLG00000006700)	morf4l1 (ENSORLG00000025632)	PIAS1 (ENSORLG00000006728) #17	skor1b (ENSORLG00000006736) #18	zgc:162898 (ENSORLG00000006741) #20	aagab (ENSORLG00000006754) #22	smad3b (ENSORLG00000006803) #23	smad6b (ENSORLG00000006825) #26	ENSORLG00000025403	LCTL (ENSORLG00000006840) #28	zwilch (ENSORLG00000006863) #29	rpl4 (ENSORLG00000006882) #30	map2k1 (ENSORLG00000006926) #32	ENSORLG00000006997 ##35	ENSORLG00000007022 ##37	SLC24A1 (ENSORLG00000007029)	ENSORLG00000026631	ENSORLG00000028299	ints14 (ENSORLG00000007056)	hacd3 (ENSORLG00000007078)	ppcdc (ENSORLG00000007090)
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o.c	ENSGT00940000155837.o.d	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00930000151035.a	ENSGT00510000048454.k.a	ENSGT00510000048454.l	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o.c	ENSGT00940000155837.o.d	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Haplochromini	ANCESTRAL SPECIES		ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454.l	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o.c	ENSGT00940000155837.o.d	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b.a #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454.l	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o.c	ENSGT00940000155837.o.d	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b.a #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Haplochromini_B	ANCESTRAL SPECIES	28	ENSGT00930000151035.a	ENSGT00510000048454.l	ENSGT00510000048454.k.b	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o.c	ENSGT00940000155837.o.d	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b.a #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Zebra mbuna	MODERN SPECIES	1110	ighmbp2 (ENSMZEG00005000665)	ENSMZEG00005000649	ENSMZEG00005000628	ENSMZEG00005000614	rapsn (ENSMZEG00005000597)	kbtbd4 (ENSMZEG00005000506)	ENSMZEG00005000486	ddb2 (ENSMZEG00005000480)	kif23 (ENSMZEG00005000318)	TLE3 (ENSMZEG00005000148)	morf4l1 (ENSMZEG00005000059)	PIAS1 (ENSMZEG00005022706) #17	skor1b (ENSMZEG00005022702) #18	zgc:162898 (ENSMZEG00005022698) #20	iqch (ENSMZEG00005022693) #21	aagab (ENSMZEG00005022686) #22	smad3b (ENSMZEG00005022682) #23	smad6b (ENSMZEG00005022680) #26	snapc5 (ENSMZEG00005022673) #31	LCTL (ENSMZEG00005022665) #28	zwilch (ENSMZEG00005022662) #29	rpl4 (ENSMZEG00005022644) #30	map2k1 (ENSMZEG00005022643) #32	ENSMZEG00005022640 ##35	ENSMZEG00005022627 ##37	SLC24A1 (ENSMZEG00005022618)	ints14 (ENSMZEG00005022613)	hacd3 (ENSMZEG00005022607)	ppcdc (ENSMZEG00005022599)	ENSMZEG00005022585	arih1 (ENSMZEG00005022582)
Eastern happy	MODERN SPECIES	19	ighmbp2 (ENSACLG00000014140)	ENSACLG00000014155	ENSACLG00000014161	rapsn (ENSACLG00000014172)	kbtbd4 (ENSACLG00000014220)	ddb2 (ENSACLG00000014238)	ENSACLG00000014281	kif23 (ENSACLG00000014311)	kif23 (ENSACLG00000014717)	TLE3 (ENSACLG00000014741)	morf4l1 (ENSACLG00000014807)	PIAS1 (ENSACLG00000014895) #17	skor1b (ENSACLG00000014916) #18	zgc:162898 (ENSACLG00000014936) #20	iqch (ENSACLG00000014950) #21	aagab (ENSACLG00000014966) #22	smad3b (ENSACLG00000015005) #23	smad6b (ENSACLG00000015060) #26	snapc5 (ENSACLG00000015178) #31	LCTL (ENSACLG00000015185) #28	zwilch (ENSACLG00000015306) #29	rpl4 (ENSACLG00000015376) #30	map2k1 (ENSACLG00000015490) #32	ENSACLG00000015528 ##35	ENSACLG00000015789 ##37	SLC24A1 (ENSACLG00000016209)	ints14 (ENSACLG00000016244)	hacd3 (ENSACLG00000016337)	ppcdc (ENSACLG00000016456)	ENSACLG00000016653	arih1 (ENSACLG00000016725)
P. nyererei	MODERN SPECIES	330	gatd1 (ENSPNYG00000015031)	chid1 (ENSPNYG00000015021)	ighmbp2 (ENSPNYG00000015003)	ENSPNYG00000014991	rapsn (ENSPNYG00000014981)	kbtbd4 (ENSPNYG00000014971)	ENSPNYG00000014956	ddb2 (ENSPNYG00000014944)	kif23 (ENSPNYG00000014871)	TLE3 (ENSPNYG00000014824)	morf4l1 (ENSPNYG00000014764)	PIAS1 (ENSPNYG00000014701) #17	skor1b (ENSPNYG00000014672) #18	zgc:162898 (ENSPNYG00000014663) #20	iqch (ENSPNYG00000014565) #21	aagab (ENSPNYG00000014514) #22	smad3b (ENSPNYG00000014483) #23	smad6b (ENSPNYG00000014464) #26	snapc5 (ENSPNYG00000014419) #31	LCTL (ENSPNYG00000014382) #28	zwilch (ENSPNYG00000014254) #29	rpl4 (ENSPNYG00000014038) #30	map2k1 (ENSPNYG00000014012) #32	ENSPNYG00000013866	ENSPNYG00000013766 ##35	ENSPNYG00000013709 ##37	SLC24A1 (ENSPNYG00000013638)	ints14 (ENSPNYG00000013587)	hacd3 (ENSPNYG00000013539)	ENSPNYG00000013487	arih1 (ENSPNYG00000013404)
Burton s mouthbrooder	MODERN SPECIES	588	chid1 (ENSHBUG00000018330)	ighmbp2 (ENSHBUG00000018318)	ENSHBUG00000018301	ENSHBUG00000018290	rapsn (ENSHBUG00000018276)	kbtbd4 (ENSHBUG00000018269)	ENSHBUG00000018262	ddb2 (ENSHBUG00000018250)	kif23 (ENSHBUG00000018203)	tle3a (ENSHBUG00000017866)	morf4l1 (ENSHBUG00000017810)	PIAS1 (ENSHBUG00000017743) #17	skor1b (ENSHBUG00000017726) #18	zgc:162898 (ENSHBUG00000017718) #20	iqch (ENSHBUG00000017702) #21	aagab (ENSHBUG00000017658) #22	smad3b (ENSHBUG00000017642) #23
Lyretail cichlid	MODERN SPECIES	305	ighmbp2 (ENSNBRG00000014911)	ENSNBRG00000014925	ENSNBRG00000014940	ENSNBRG00000014952	rapsn (ENSNBRG00000014965)	kbtbd4 (ENSNBRG00000014991)	ENSNBRG00000015089	ddb2 (ENSNBRG00000015103)	kif23 (ENSNBRG00000015135)	TLE3 (ENSNBRG00000015223)	morf4l1 (ENSNBRG00000015273)	PIAS1 (ENSNBRG00000015347) #17	skor1b (ENSNBRG00000015564) #18	zgc:162898 (ENSNBRG00000015586) #20	iqch (ENSNBRG00000015611) #21	aagab (ENSNBRG00000015745) #22	smad3b (ENSNBRG00000015781) #23	smad6b (ENSNBRG00000015802) #26	snapc5 (ENSNBRG00000015818) #31	LCTL (ENSNBRG00000015831) #28	zwilch (ENSNBRG00000015874) #29	rpl4 (ENSNBRG00000015986) #30	map2k1 (ENSNBRG00000016125) #32	ENSNBRG00000016155 ##35	ENSNBRG00000016229	ENSNBRG00000016316 ##37	SLC24A1 (ENSNBRG00000016597)	ints14 (ENSNBRG00000016618)	hacd3 (ENSNBRG00000016668)	ppcdc (ENSNBRG00000016756)	ENSNBRG00000016913
Nile tilapia	MODERN SPECIES	19	gatd1 (ENSONIG00000015518)	chid1 (ENSONIG00000015510)	ighmbp2 (ENSONIG00000015506)	rapsn (ENSONIG00000015500)	kbtbd4 (ENSONIG00000015498)	ddb2 (ENSONIG00000015496)	kif23 (ENSONIG00000015489)	kif23 (ENSONIG00000040865)	ENSONIG00000039253	TLE3 (ENSONIG00000015480)	morf4l1 (ENSONIG00000015475)	PIAS1 (ENSONIG00000015473) #17	skor1b (ENSONIG00000041762) #18	zgc:162898 (ENSONIG00000015471) #20	iqch (ENSONIG00000015469) #21	aagab (ENSONIG00000039374) #22	smad3b (ENSONIG00000015464) #23	smad6 (ENSONIG00000027979) #26	snapc5 (ENSONIG00000015460) #31	LCTL (ENSONIG00000015457) #28	zwilch (ENSONIG00000015453) #29	rpl4 (ENSONIG00000015438) #30	map2k1 (ENSONIG00000041722) #32	ENSONIG00000034322	ENSONIG00000015428 ##35	ENSONIG00000015421 ##37	SLC24A1 (ENSONIG00000015416)	ENSONIG00000042969	ints14 (ENSONIG00000015414)	hacd3 (ENSONIG00000015409)	ppcdc (ENSONIG00000015408)
Midas cichlid	MODERN SPECIES	385	gatd1 (ENSACIG00000004770)	chid1 (ENSACIG00000004701)	ighmbp2 (ENSACIG00000004670)	ENSACIG00000004665	ENSACIG00000004657	rapsn (ENSACIG00000004645)	kbtbd4 (ENSACIG00000004631)	ddb2 (ENSACIG00000004603)	kif23 (ENSACIG00000004552)	TLE3 (ENSACIG00000004505)	morf4l1 (ENSACIG00000004474)	PIAS1 (ENSACIG00000004315) #17	skor1b (ENSACIG00000004288) #18	zgc:162898 (ENSACIG00000004275) #20	iqch (ENSACIG00000004210) #21	aagab (ENSACIG00000004078) #22	smad3b (ENSACIG00000004048) #23	smad6b (ENSACIG00000004032) #26	snapc5 (ENSACIG00000004004) #31	LCTL (ENSACIG00000003960) #28	zwilch (ENSACIG00000003822) #29	rpl4 (ENSACIG00000003731) #30	map2k1 (ENSACIG00000003699) #32	ENSACIG00000003648 ##35	ENSACIG00000003590 ##37	SLC24A1 (ENSACIG00000003557)	ints14 (ENSACIG00000003523)	hacd3 (ENSACIG00000003504)	ppcdc (ENSACIG00000003479)	ENSACIG00000003474	arih1 (ENSACIG00000003347)
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Pomacentridae_A	ANCESTRAL SPECIES	9	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Amphiprion	ANCESTRAL SPECIES	4	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT01030000234519.e.b.k.b	ENSGT00950000182965.a.b.a.a	ENSGT01030000234539.a.a.b.a.b.a.b #17	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f.c	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185	ENSGT00940000155744
Clown anemonefish	MODERN SPECIES	1348								kif23 (ENSAOCG00000003882)	TLE3 (ENSAOCG00000003819)	ENSAOCG00000003805	morf4l1 (ENSAOCG00000003793)	PIAS1 (ENSAOCG00000003771) #17	skor1b (ENSAOCG00000003749) #18	zgc:162898 (ENSAOCG00000003743) #20	iqch (ENSAOCG00000003725) #21	aagab (ENSAOCG00000003690) #22	smad3b (ENSAOCG00000000100) #23	smad6b (ENSAOCG00000003669) #26	snapc5 (ENSAOCG00000003658) #31	LCTL (ENSAOCG00000003648) #28	zwilch (ENSAOCG00000003631) #29	rpl4 (ENSAOCG00000022562) #30	map2k1 (ENSAOCG00000022590) #32	ENSAOCG00000022525 ##35	USP15 (ENSAOCG00000022427)	ENSAOCG00000022343	KDM5A (ENSAOCG00000022150)	AKR1D1 (ENSAOCG00000022037)	ENSAOCG00000022029	ENSAOCG00000021997	atxn10 (ENSAOCG00000021916)
Orange clownfish	MODERN SPECIES	18	chid1 (ENSAPEG00000021760)	ighmbp2 (ENSAPEG00000021713)	ENSAPEG00000021695	ENSAPEG00000021685	rapsn (ENSAPEG00000021656)	kbtbd4 (ENSAPEG00000021632)	ENSAPEG00000021620	ddb2 (ENSAPEG00000021600)	kif23 (ENSAPEG00000021465)	TLE3 (ENSAPEG00000021401)	morf4l1 (ENSAPEG00000021329)	PIAS1 (ENSAPEG00000021254) #17	skor1b (ENSAPEG00000021226) #18	zgc:162898 (ENSAPEG00000021209) #20	iqch (ENSAPEG00000021177) #21	aagab (ENSAPEG00000021154) #22	smad3b (ENSAPEG00000021121) #23	smad6b (ENSAPEG00000021097) #26	snapc5 (ENSAPEG00000021082) #31	LCTL (ENSAPEG00000021009) #28	zwilch (ENSAPEG00000020879) #29	rpl4 (ENSAPEG00000020765) #30	map2k1 (ENSAPEG00000020723) #32	ENSAPEG00000020674 ##35	ENSAPEG00000020590 ##37	SLC24A1 (ENSAPEG00000020576)	SLC24A1 (ENSAPEG00000020557)	ints14 (ENSAPEG00000020521)	hacd3 (ENSAPEG00000020472)	ppcdc (ENSAPEG00000020454)	ENSAPEG00000020412
Spiny chromis	MODERN SPECIES	6	cd151 (ENSAPOG00000000272)	gatd1 (ENSAPOG00000009447)	chid1 (ENSAPOG00000009458)	ighmbp2 (ENSAPOG00000009399)	ENSAPOG00000009326	rapsn (ENSAPOG00000009316)	kbtbd4 (ENSAPOG00000009282)	ddb2 (ENSAPOG00000009264)	kif23 (ENSAPOG00000009173)	TLE3 (ENSAPOG00000009026)	morf4l1 (ENSAPOG00000008936)	PIAS1 (ENSAPOG00000008862) #17	skor1b (ENSAPOG00000008831) #18	zgc:162898 (ENSAPOG00000008823) #20	iqch (ENSAPOG00000008805) #21	aagab (ENSAPOG00000008748) #22	smad3b (ENSAPOG00000008731) #23	smad6b (ENSAPOG00000008675) #26	snapc5 (ENSAPOG00000008638) #31	LCTL (ENSAPOG00000008616) #28	zwilch (ENSAPOG00000008541) #29	rpl4 (ENSAPOG00000008471) #30	map2k1 (ENSAPOG00000008515) #32	ENSAPOG00000008421 ##35	ENSAPOG00000008269 ##37	SLC24A1 (ENSAPOG00000008141)	SLC24A1 (ENSAPOG00000007942)	ints14 (ENSAPOG00000007621)	hacd3 (ENSAPOG00000007552)	ppcdc (ENSAPOG00000007489)	ENSAPOG00000007458
Bicolor damselfish	MODERN SPECIES	317													skor1b (ENSSPAG00000019235) #18	zgc:162898 (ENSSPAG00000019226) #20	iqch (ENSSPAG00000019195) #21	aagab (ENSSPAG00000019178) #22	smad3b (ENSSPAG00000019142) #23	smad6b (ENSSPAG00000019122) #26	snapc5 (ENSSPAG00000019113) #31	LCTL (ENSSPAG00000019086) #28	zwilch (ENSSPAG00000019063) #29	rpl4 (ENSSPAG00000019006) #30	map2k1 (ENSSPAG00000018984) #32	ENSSPAG00000018936 ##35	ENSSPAG00000018896 ##37	SLC24A1 (ENSSPAG00000018871)	SLC24A1 (ENSSPAG00000018853)	ints14 (ENSSPAG00000018803)	hacd3 (ENSSPAG00000018731)	ppcdc (ENSSPAG00000018714)	ENSSPAG00000018683
Tiger tail seahorse	MODERN SPECIES	249								ENSHCOG00000015337	ddb2 (ENSHCOG00000015319)	kif23 (ENSHCOG00000015297)	TLE3 (ENSHCOG00000015185)	morf4l1 (ENSHCOG00000000418)	PIAS1 (ENSHCOG00000015129) #17	skor1b (ENSHCOG00000015092) #18	zgc:162898 (ENSHCOG00000015085) #20	aagab (ENSHCOG00000015070) #22	smad3b (ENSHCOG00000015055) #23	smad6b (ENSHCOG00000015011) #26	snapc5 (ENSHCOG00000014982) #31	LCTL (ENSHCOG00000014977) #28	zwilch (ENSHCOG00000014943) #29	rpl4 (ENSHCOG00000014929) #30	map2k1 (ENSHCOG00000014666) #32	ENSHCOG00000014452 ##35	ENSHCOG00000014412 ##37	SLC24A1 (ENSHCOG00000014347)	ints14 (ENSHCOG00000014315)	hacd3 (ENSHCOG00000014277)	ppcdc (ENSHCOG00000014241)	ENSHCOG00000014240	arih1 (ENSHCOG00000014228)
Pinecone sodierfish	MODERN SPECIES	20	cd151 (ENSMMDG00005004047)	gatd1 (ENSMMDG00005004177)	chid1 (ENSMMDG00005004213)	ighmbp2 (ENSMMDG00005004807)	rapsn (ENSMMDG00005004846)	kbtbd4 (ENSMMDG00005004850)	ENSMMDG00005004856	ddb2 (ENSMMDG00005004863)	kif23 (ENSMMDG00005004943)	TLE3 (ENSMMDG00005007447)	morf4l1 (ENSMMDG00005009517)	PIAS1 (ENSMMDG00005009535) #17	skor1b (ENSMMDG00005009562) #18	zgc:162898 (ENSMMDG00005009564) #20	iqch (ENSMMDG00005009565) #21	aagab (ENSMMDG00005009566) #22	smad3b (ENSMMDG00005009590) #23	smad6b (ENSMMDG00005009705) #26	snapc5 (ENSMMDG00005009708) #31	LCTL (ENSMMDG00005009714) #28	zwilch (ENSMMDG00005009915) #29	rpl4 (ENSMMDG00005009927) #30	map2k1 (ENSMMDG00005010104) #32	ENSMMDG00005010191 ##35	ENSMMDG00005010200 ##37	SLC24A1 (ENSMMDG00005010216)	ints14 (ENSMMDG00005010242)	hacd3 (ENSMMDG00005010257)	ppcdc (ENSMMDG00005010260)	ENSMMDG00005010261	arih1 (ENSMMDG00005010264)
Cod	MODERN SPECIES	22	tmem258 (ENSGMOG00000017689)	tmem138 (ENSGMOG00000032822)	cracr2b (ENSGMOG00000017652)	cd151 (ENSGMOG00000017632)	gatd1 (ENSGMOG00000017617)	chid1 (ENSGMOG00000017597)	ighmbp2 (ENSGMOG00000017553)	rapsn (ENSGMOG00000017544)	kbtbd4 (ENSGMOG00000017530)	ddb2 (ENSGMOG00000017517)	kif23 (ENSGMOG00000017492)	morf4l1 (ENSGMOG00000008374)	PIAS1 (ENSGMOG00000008372) #17	skor1b (ENSGMOG00000033826) #18	zgc:162898 (ENSGMOG00000008367) #20	aagab (ENSGMOG00000008365) #22	smad3b (ENSGMOG00000029371) #23	smad6b (ENSGMOG00000008363) #26	snapc5 (ENSGMOG00000036981) #31	LCTL (ENSGMOG00000008361) #28	zwilch (ENSGMOG00000008360) #29	rpl4 (ENSGMOG00000008359) #30	map2k1 (ENSGMOG00000008358) #32	ENSGMOG00000008356 ##35	ENSGMOG00000008355 #36	ENSGMOG00000036396	ENSGMOG00000008354 ##37	SLC24A1 (ENSGMOG00000024598)	ints14 (ENSGMOG00000008352)	hacd3 (ENSGMOG00000008351)	ppcdc (ENSGMOG00000008350)
Protacanthopterygii	ANCESTRAL SPECIES	10	ENSGT00390000018587.f	ENSGT00440000033504.A	ENSGT00940000157760.g.b	ENSGT00940000165047	ENSGT00390000012069	ENSGT00930000151035.a	ENSGT00510000048454	ENSGT00390000016785	ENSGT00940000158775	ENSGT00990000203778	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT00940000158440.g.b #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b #23	ENSGT00940000158146.b.j #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000154914.wb #36	ENSGT00940000155836.A ##37	ENSGT01030000234532.B.e.b.f	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000169185
Salmoninae	ANCESTRAL SPECIES	271													ENSGT01030000234539.a.a.b.a.b.a.b.c.b #17	ENSGT00940000158440.g.b.g.b #18	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b.g #23	ENSGT00940000158146.b.j #26	ENSGT00390000010331 #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000154914.wb #36	ENSGT00940000155836.A ##37	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000155744.t.b	ENSGT01030000234614.C
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00730000113054	ENSGT00940000155040.a.d	ENSGT00940000160990.f	ENSGT00530000063626.a.g	ENSGT00390000010089	ENSGT00390000018587.f.d	ENSGT00390000018587.f.c	ENSGT00440000033504.A	ENSGT00940000157760.g.b	ENSGT00510000048454	ENSGT00510000047881	ENSGT01030000234519.e.a.a.a.b.f.f	ENSGT01030000234539.a.a.b.a.b.a.b.c.b #17	ENSGT00940000158440.g.b.g.b #18	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b.g #23	ENSGT00940000158146.b.j #26	ENSGT00390000010331.k.a #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145.q #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000154914.wb.b #36	ENSGT00940000155836.A ##37	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000155744.t.b	ENSGT01030000234614.C
Oncorhynchus	ANCESTRAL SPECIES	90											ENSGT00510000047881	ENSGT01030000234519.e.a.a.a.b.f.f	ENSGT01030000234539.a.a.b.a.b.a.b.c.b #17	ENSGT00940000158440.g.b.g.b #18	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b.g #23	ENSGT00940000158146.b.j #26	ENSGT00390000010331.k.a #31	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145.q #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000154914.wb.b #36	ENSGT00940000155836.A ##37	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107.n	ENSGT00940000155744.t.b	ENSGT01030000234614.C
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000071593	tmem258 (ENSOMYG00000015842)	tmem138 (ENSOMYG00000015851)	cracr2b (ENSOMYG00000065409)	ENSOMYG00000015898	ENSOMYG00000057438	ENSOMYG00000037240	ENSOMYG00000076334	ENSOMYG00000052268	ENSOMYG00000049187	ENSOMYG00000064085	ENSOMYG00000054822	ENSOMYG00000071075 #17	skor1b (ENSOMYG00000015835) #18	iqch (ENSOMYG00000073930) #21	ENSOMYG00000023824 #22	smad3b (ENSOMYG00000040088) #23	ENSOMYG00000055253	ENSOMYG00000074334	smad6b (ENSOMYG00000035050) #26	snapc5 (ENSOMYG00000026529) #31	LCTL (ENSOMYG00000051376) #28	zwilch (ENSOMYG00000064330) #29	rpl4 (ENSOMYG00000015672) #30	map2k1 (ENSOMYG00000070762) #32	rab11a (ENSOMYG00000028574) #36	ENSOMYG00000051025 ##37	ints14 (ENSOMYG00000015775)	ENSOMYG00000048541	ppcdc (ENSOMYG00000023939)	ENSOMYG00000058050
Oncorhynchus_a	ANCESTRAL SPECIES	365														ENSGT01030000234519.e.a.a.a.b.f.f	ENSGT01030000234539.a.a.b.a.b.a.b.c.b #17	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b.g #23
Chinook salmon	MODERN SPECIES	603																aagab (ENSOTSG00005038143) #22
Coho salmon	MODERN SPECIES	1	LCTL (ENSOKIG00005020135) #28	snapc5 (ENSOKIG00005020275) #31	smad6b (ENSOKIG00005020286) #26	ENSOKIG00005020296	ENSOKIG00005020309	CD151 (ENSOKIG00005020322)	ENSOKIG00005020382	ddb2 (ENSOKIG00005020530)	ENSOKIG00005020544	ENSOKIG00005020649	ENSOKIG00005024128 #17	ENSOKIG00005024437	ENSOKIG00005024451	ENSOKIG00005024463	ENSOKIG00005024473	aagab (ENSOKIG00005024492) #22	SMAD3 (ENSOKIG00005024533) #23	ENSOKIG00005024593	ENSOKIG00005024624	ENSOKIG00005024630	tmem138 (ENSOKIG00005024640)	tmem258 (ENSOKIG00005011783)	ENSOKIG00005011798	TMEM80 (ENSOKIG00005011808)	EPS8L2 (ENSOKIG00005011829)	fads2 (ENSOKIG00005011983)	ENSOKIG00005012707	LRRC10B (ENSOKIG00005015566)	ENSOKIG00005015572	ENSOKIG00005015576	ENSOKIG00005015601
Salmo	ANCESTRAL SPECIES	91	ENSGT00940000165631.p.a.a	ENSGT00940000157180.a.f	ENSGT00940000164030.j	ENSGT00940000160990.f	ENSGT00530000063626.a.g	ENSGT00390000010089	ENSGT00390000018587.f.c	ENSGT00440000033504.A	ENSGT00940000157760.g.b	ENSGT00510000048454	ENSGT00510000047881	ENSGT01030000234519.e.a.a.a.b.f.f	ENSGT01030000234539.a.a.b.a.b.a.b.c.b #17	ENSGT00940000158440.g.b.g.b #18	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d.a.b.g #23	ENSGT00940000158146.b.j #26	ENSGT00940000180676	ENSGT00940000157369.a #28	ENSGT00390000013696 #29	ENSGT00390000018145.q #30	ENSGT00940000153487.b.b #32	ENSGT00940000155333.A.b ##35	ENSGT00940000154914.wb.b #36	ENSGT00940000155836.A ##37	ENSGT00390000009486	ENSGT00530000062962.b.a.f	ENSGT00440000038107	ENSGT00940000155744.t.b	ENSGT01030000234614.C
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	15	ENSSSAG00000106991	cd151 (ENSSSAG00000111560)	ENSSSAG00000073286	ENSSSAG00000105869	ENSSSAG00000091330	ENSSSAG00000099032	ENSSSAG00000112218	ENSSSAG00000115130	ENSSSAG00000114635	ENSSSAG00000120598	ENSSSAG00000113149	ENSSSAG00000073314	ENSSSAG00000073337 #17	skor1b (ENSSSAG00000073404) #18	iqch (ENSSSAG00000073414) #21	aagab (ENSSSAG00000082892) #22	smad3b (ENSSSAG00000115090) #23	smad6 (ENSSSAG00000073418) #26	ENSSSAG00000117817	ENSSSAG00000073427	snapc5 (ENSSSAG00000102443) #31	LCTL (ENSSSAG00000073442) #28	zwilch (ENSSSAG00000008578) #29	rpl4 (ENSSSAG00000008596) #30	map2k1 (ENSSSAG00000073424) #32	ENSSSAG00000086055 ##35	rab11a (ENSSSAG00000083201) #36	ENSSSAG00000009435 ##37	ints14 (ENSSSAG00000106122)	hacd3 (ENSSSAG00000009344)	ppcdc (ENSSSAG00000010656)
Atlantic salmon	MODERN SPECIES	36																ENSSSAG00000073409 #22	ENSSSAG00000106033 #23
River trout	MODERN SPECIES	33	ENSSTUG00000029332	ENSSTUG00000029350	ENSSTUG00000008959	ENSSTUG00000009017	ENSSTUG00000009031	ENSSTUG00000009072	ENSSTUG00000009141	ENSSTUG00000009155	ENSSTUG00000009161	ENSSTUG00000009180	ENSSTUG00000009190	ENSSTUG00000009248	ddb2 (ENSSTUG00000009449)	ENSSTUG00000009581	iqch (ENSSTUG00000013633) #21	aagab (ENSSTUG00000013689) #22	smad3b (ENSSTUG00000013733) #23	smad6b (ENSSTUG00000013843) #26	ENSSTUG00000013846	ENSSTUG00000013877	LCTL (ENSSTUG00000013900) #28	zwilch (ENSSTUG00000014067) #29	rpl4 (ENSSTUG00000014130) #30	map2k1 (ENSSTUG00000014171) #32	ENSSTUG00000014230 ##35	RAB11B (ENSSTUG00000014285)	ENSSTUG00000014342 ##37	ints14 (ENSSTUG00000014861)	hacd3 (ENSSTUG00000014954)	ENSSTUG00000015027	ENSSTUG00000015031
Huchen	MODERN SPECIES	6328														ENSHHUG00000023093 #21	ENSHHUG00000023096 #21	aagab (ENSHHUG00000023100) #22
Northern pike	MODERN SPECIES	18	ENSELUG00000029160	ENSELUG00000032451	ENSELUG00000002781	smad6b (ENSELUG00000024569) #26	ENSELUG00000030325	ENSELUG00000024546	ENSELUG00000024494	ENSELUG00000024486	ENSELUG00000024480	ENSELUG00000024434	morf4l1 (ENSELUG00000024423)	PIAS1 (ENSELUG00000024418) #17	skor1b (ENSELUG00000024340) #18	zgc:162898 (ENSELUG00000025422) #20	iqch (ENSELUG00000024287) #21	aagab (ENSELUG00000024235) #22	smad3b (ENSELUG00000024171) #23	ENSELUG00000034022	PNPLA2 (ENSELUG00000024038)	ENSELUG00000024009	ENSELUG00000023968	SYT7 (ENSELUG00000023938)	LRRC10B (ENSELUG00000023860)	fads2 (ENSELUG00000023847)	EPS8L2 (ENSELUG00000023804)	TMEM80 (ENSELUG00000023746)	MYRF (ENSELUG00000023732)	tmem258 (ENSELUG00000028457)	tmem138 (ENSELUG00000023617)	cracr2b (ENSELUG00000023578)	cd151 (ENSELUG00000023563)
Osteoglossiformes	ANCESTRAL SPECIES	37	ENSGT00940000164138	ENSGT00940000155465.i #13	ENSGT00940000158689 #12	ENSGT00950000182907.a.b.b.b.a #10	ENSGT00940000162591 #8	ENSGT00390000006043	ENSGT00940000158844	ENSGT00940000155837	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.a	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000007218 #22	ENSGT00940000153499.b.b.d #23	ENSGT00940000158146 #26	ENSGT00940000165890	ENSGT00940000157369 #28	ENSGT00390000018145 #30	ENSGT00940000153487.b.b #32	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.A ##35	ENSGT00940000154914 #36	ENSGT00390000018400.a	ENSGT01040000240503.A.a.a.e	ENSGT00530000063675.a.n	ENSGT00530000063335.A.sb	ENSGT00940000155164.a.b
Asian bonytongue	MODERN SPECIES	2	CORO2B (ENSSFOG00015009298) #12	anp32a (ENSSFOG00015032753) #10	NOX5 (ENSSFOG00015009192) #8	glceb (ENSSFOG00015009150)	paqr5a (ENSSFOG00015009123)	kif23 (ENSSFOG00015009021)	tle3a (ENSSFOG00015008917)	UACA (ENSSFOG00015008887)	morf4l1 (ENSSFOG00015008833)	ENSSFOG00015027278	PIAS1 (ENSSFOG00015008750) #17	skor1a (ENSSFOG00015008718) #18	ENSSFOG00015028767	map2k5 (ENSSFOG00015008680) #19	zgc:162898 (ENSSFOG00015008646) #20	aagab (ENSSFOG00015008638) #22	smad3b (ENSSFOG00015008603) #23	smad6a (ENSSFOG00015029740) #26	crybgx (ENSSFOG00015008536)	lctla (ENSSFOG00015008481) #28
P. kingsleyae	MODERN SPECIES	146	CORO2B (ENSPKIG00000016948) #12	anp32a (ENSPKIG00000016897) #10	NOX5 (ENSPKIG00000016853) #8	glceb (ENSPKIG00000016806)	paqr5a (ENSPKIG00000016740)	kif23 (ENSPKIG00000016508)	ENSPKIG00000016421	tle3a (ENSPKIG00000016380)	UACA (ENSPKIG00000016315)	morf4l1 (ENSPKIG00000016253)	PIAS1 (ENSPKIG00000016189) #17	skor1a (ENSPKIG00000016152) #18	ENSPKIG00000016124	map2k5 (ENSPKIG00000015970) #19	zgc:162898 (ENSPKIG00000015892) #20	aagab (ENSPKIG00000015838) #22	smad3b (ENSPKIG00000015799) #23	smad6a (ENSPKIG00000015767) #26	lctla (ENSPKIG00000015716) #28	rpl4 (ENSPKIG00000015644) #30	map2k1 (ENSPKIG00000015608) #32	tipin (ENSPKIG00000015565) #33	ENSPKIG00000015547	dis3l (ENSPKIG00000015490) #34	ENSPKIG00000015455	ENSPKIG00000015215 ##35	RAB11A (ENSPKIG00000015102) #36	EIF3J (ENSPKIG00000015047)	ENSPKIG00000014991	CTDSPL2 (ENSPKIG00000014916)	GOLM2 (ENSPKIG00000014876)
Spotted gar	MODERN SPECIES	669	kif23 (ENSLOCG00000013995)	paqr5a (ENSLOCG00000013987)	glcea (ENSLOCG00000013983)	NOX5 (ENSLOCG00000013975) #8	anp32a (ENSLOCG00000013972) #10	CORO2B (ENSLOCG00000013967) #12	itga11a (ENSLOCG00000013952) #13	ENSLOCG00000013948	CLN6 (ENSLOCG00000013946) #15	calml4a (ENSLOCG00000013940) #16	PIAS1 (ENSLOCG00000013933) #17	skor1a (ENSLOCG00000013929) #18	map2k5 (ENSLOCG00000013923) #19	zgc:162898 (ENSLOCG00000013920) #20	iqch (ENSLOCG00000013914) #21	aagab (ENSLOCG00000013907) #22	smad3b (ENSLOCG00000013897) #23	smad6a (ENSLOCG00000013892) #26	snapc5 (ENSLOCG00000013891) #31	crybgx (ENSLOCG00000013888)	lctla (ENSLOCG00000013878) #28	zwilch (ENSLOCG00000013873) #29	rpl4 (ENSLOCG00000013867) #30	map2k1 (ENSLOCG00000013858) #32	tipin (ENSLOCG00000013854) #33	dis3l (ENSLOCG00000013846) #34	ENSLOCG00000013837 #35	rab11a (ENSLOCG00000013835) #36	dennd4a (ENSLOCG00000013827) #37	SLC24A1 (ENSLOCG00000013820)	ints14 (ENSLOCG00000013812)
Reedfish	MODERN SPECIES	8	ENSECRG00000020214	ENSECRG00000020166	csnk1g1 (ENSECRG00000019804)	PCLAF (ENSECRG00000019739)	ppib (ENSECRG00000019696)	ENSECRG00000019664	PEAK1 (ENSECRG00000019637)	hmg20a (ENSECRG00000019610)	calml4a (ENSECRG00000019589) #16	PIAS1 (ENSECRG00000019551) #17	ENSECRG00000019525 #17	ENSECRG00000019494 #18	map2k5 (ENSECRG00000019409) #19	zgc:162898 (ENSECRG00000019374) #20	iqch (ENSECRG00000019116) #21	aagab (ENSECRG00000019047) #22	smad3b (ENSECRG00000018886) #23	smad6a (ENSECRG00000018835) #26	snapc5 (ENSECRG00000018817) #31	crybgx (ENSECRG00000018775)	lctla (ENSECRG00000017984) #28	zwilch (ENSECRG00000017849) #29	rpl4 (ENSECRG00000017761) #30	map2k1 (ENSECRG00000017617) #32	tipin (ENSECRG00000017552) #33	dis3l (ENSECRG00000017497) #34	ENSECRG00000017450 #35	ENSECRG00000017340	ENSECRG00000017309	dennd4a (ENSECRG00000017079) #37	SLC24A1 (ENSECRG00000016985)