Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B
Primates	ANCESTRAL SPECIES	2	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B
Haplorrhini	ANCESTRAL SPECIES	17	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #29	ENSGT00910000147890 #28	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.a.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B
Catarrhini	ANCESTRAL SPECIES	20	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #29	ENSGT00910000147890 #28	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.a.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b.i.a #33	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B
Cercopithecidae	ANCESTRAL SPECIES	21	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #29	ENSGT00910000147890 #28	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.a.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b.i.a #33	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b
Rhinopithecus	ANCESTRAL SPECIES	49	ENSGT00910000147053	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #29	ENSGT00910000147890 #28	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.a.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b.i.a #33	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b
Golden snub-nosed monkey	MODERN SPECIES	1106	NOX5 (ENSRROG00000040374) #7	SPESP1 (ENSRROG00000031515) #8	ENSRROG00000028422 #9	ANP32A (ENSRROG00000029508) #10	CORO2B (ENSRROG00000043899) #11	ITGA11 (ENSRROG00000032503) #12	FEM1B (ENSRROG00000030899) #13	CLN6 (ENSRROG00000033033) #14	CALML4 (ENSRROG00000045323) #15	PIAS1 (ENSRROG00000029180) #16	SKOR1 (ENSRROG00000040038) #17	ENSRROG00000000680 #18	MAP2K5 (ENSRROG00000043911) #19	C15orf61 (ENSRROG00000026466) #20	IQCH (ENSRROG00000023549) #21	AAGAB (ENSRROG00000042217) #22	SMAD3 (ENSRROG00000024517) #23	ENSRROG00000003570 #24	ENSRROG00000012076 #25	ENSRROG00000043245 #26	ENSRROG00000009183 #27	ENSRROG00000034499 #28	LCTL (ENSRROG00000040652) #29	ZWILCH (ENSRROG00000042656) #30	ENSRROG00000036201 #31	SNAPC5 (ENSRROG00000042536) #32	MAP2K1 (ENSRROG00000034405) #33	TIPIN (ENSRROG00000004107) #34	DIS3L (ENSRROG00000038323) #35	MEGF11 (ENSRROG00000025747) #36	RAB11A (ENSRROG00000035305) #37
Black snub-nosed monkey	MODERN SPECIES	1519	GLCE (ENSRBIG00000039984)	ENSRBIG00000044757	NOX5 (ENSRBIG00000038740) #7	SPESP1 (ENSRBIG00000038257) #8	ANP32A (ENSRBIG00000032599) #10	CORO2B (ENSRBIG00000035447) #11	ITGA11 (ENSRBIG00000032002) #12	FEM1B (ENSRBIG00000029847) #13	CLN6 (ENSRBIG00000028123) #14	CALML4 (ENSRBIG00000022837) #15	PIAS1 (ENSRBIG00000035465) #16	SKOR1 (ENSRBIG00000027225) #17	MAP2K5 (ENSRBIG00000042741) #19	C15orf61 (ENSRBIG00000041044) #20	IQCH (ENSRBIG00000037509) #21	AAGAB (ENSRBIG00000027896) #22	SMAD3 (ENSRBIG00000026650) #23	SMAD6 (ENSRBIG00000039005) #26	ENSRBIG00000044058 #27	LCTL (ENSRBIG00000034724) #29	ENSRBIG00000038789 #28	ZWILCH (ENSRBIG00000043121) #30	ENSRBIG00000043139 #31	SNAPC5 (ENSRBIG00000033556) #32	MAP2K1 (ENSRBIG00000031516) #33	TIPIN (ENSRBIG00000035207) #34	DIS3L (ENSRBIG00000029360) #35	MEGF11 (ENSRBIG00000032238) #36	RAB11A (ENSRBIG00000035649) #37	DENND4A (ENSRBIG00000043812)	SLC24A1 (ENSRBIG00000029938)
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00910000147053	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b ##24	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.a.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b.i.a #33	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b
Vervet Monkey	MODERN SPECIES	18	PAQR5 (ENSCSAG00000013592)	GLCE (ENSCSAG00000013585)	NOX5 (ENSCSAG00000013567) #7	SPESP1 (ENSCSAG00000013535) #8	ANP32A (ENSCSAG00000013528) #10	CORO2B (ENSCSAG00000013518) #11	ITGA11 (ENSCSAG00000013505) #12	ENSCSAG00000013485	CLN6 (ENSCSAG00000013477) #14	CALML4 (ENSCSAG00000013468) #15	PIAS1 (ENSCSAG00000013455) #16	SKOR1 (ENSCSAG00000013424) #17	MAP2K5 (ENSCSAG00000013397) #19	C15orf61 (ENSCSAG00000013380) #20	IQCH (ENSCSAG00000013352) #21	AAGAB (ENSCSAG00000013281) #22	SMAD3 (ENSCSAG00000013275) #23	ENSCSAG00000019736	ENSCSAG00000013271 ##24	SMAD6 (ENSCSAG00000013248) #26	LCTL (ENSCSAG00000013237) #29	ZWILCH (ENSCSAG00000013218) #30	ENSCSAG00000013205 ##31	SNAPC5 (ENSCSAG00000013199) #32	MAP2K1 (ENSCSAG00000013191) #33	TIPIN (ENSCSAG00000013176) #34	DIS3L (ENSCSAG00000013140) #35	MEGF11 (ENSCSAG00000013112) #36	RAB11A (ENSCSAG00000013038) #37	DENND4A (ENSCSAG00000013032)	SLC24A1 (ENSCSAG00000013003)
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00390000006043	ENSGT00910000147053	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b ##24	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.a.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b.i.a #33	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b
Cercopithecinae_b	ANCESTRAL SPECIES	31	ENSGT00390000006043	ENSGT00910000147053	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b ##24	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.a.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b.i.a #33	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b
Olive baboon	MODERN SPECIES	17	SPESP1 (ENSPANG00000016524) #8	ANP32A (ENSPANG00000016536) #10	ENSPANG00000048171	CORO2B (ENSPANG00000016540) #11	ITGA11 (ENSPANG00000016582) #12	FEM1B (ENSPANG00000016581) #13	ENSPANG00000037059	CLN6 (ENSPANG00000016585) #14	CALML4 (ENSPANG00000016584) #15	PIAS1 (ENSPANG00000016583) #16	ENSPANG00000043681	SKOR1 (ENSPANG00000016593) #17	MAP2K5 (ENSPANG00000016592) #19	C15orf61 (ENSPANG00000016591) #20	IQCH (ENSPANG00000016625) #21	AAGAB (ENSPANG00000016628) #22	SMAD3 (ENSPANG00000016627) #23	ENSPANG00000016626 ##24	SMAD6 (ENSPANG00000016648) #26	LCTL (ENSPANG00000016647) #29	ZWILCH (ENSPANG00000016646) #30	ENSPANG00000016666 #31	SNAPC5 (ENSPANG00000016665) #32	MAP2K1 (ENSPANG00000016664) #33	TIPIN (ENSPANG00000016672) #34	DIS3L (ENSPANG00000016671) #35	ENSPANG00000046531	ENSPANG00000024144	MEGF11 (ENSPANG00000016670) #36	RAB11A (ENSPANG00000016687) #37	DENND4A (ENSPANG00000016685)
Cercopithecinae_d	ANCESTRAL SPECIES	37	ENSGT00390000006043	ENSGT00910000147053	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b ##24	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.a.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b.i.a #33	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b
Drill	MODERN SPECIES	253	GLCE (ENSMLEG00000000746)	ENSMLEG00000026060	NOX5 (ENSMLEG00000025119) #7	SPESP1 (ENSMLEG00000035603) #8	ANP32A (ENSMLEG00000028255) #10	CORO2B (ENSMLEG00000034024) #11	ITGA11 (ENSMLEG00000034075) #12	FEM1B (ENSMLEG00000031589) #13	CLN6 (ENSMLEG00000031755) #14	CALML4 (ENSMLEG00000034518) #15	PIAS1 (ENSMLEG00000042488) #16	SKOR1 (ENSMLEG00000033424) #17	MAP2K5 (ENSMLEG00000032952) #19	C15orf61 (ENSMLEG00000044432) #20	IQCH (ENSMLEG00000008461) #21	AAGAB (ENSMLEG00000042581) #22	SMAD3 (ENSMLEG00000032633) #23	ENSMLEG00000039372	ENSMLEG00000033311	ENSMLEG00000039010 ##24	ENSMLEG00000036582 #27	LCTL (ENSMLEG00000011538) #29	ZWILCH (ENSMLEG00000031789) #30	ENSMLEG00000043250 #31	SNAPC5 (ENSMLEG00000044262) #32	MAP2K1 (ENSMLEG00000034124) #33	TIPIN (ENSMLEG00000031419) #34	DIS3L (ENSMLEG00000034558) #35	ENSMLEG00000039621	MEGF11 (ENSMLEG00000042443) #36	RAB11A (ENSMLEG00000032505) #37
Sooty mangabey	MODERN SPECIES	336	ENSCATG00000031394	NOX5 (ENSCATG00000036564) #7	SPESP1 (ENSCATG00000044425) #8	ANP32A (ENSCATG00000031468) #10	ENSCATG00000024063	CORO2B (ENSCATG00000040950) #11	ITGA11 (ENSCATG00000030599) #12	FEM1B (ENSCATG00000044684) #13	CLN6 (ENSCATG00000003907) #14	CALML4 (ENSCATG00000040034) #15	PIAS1 (ENSCATG00000010291) #16	SKOR1 (ENSCATG00000011653) #17	MAP2K5 (ENSCATG00000040709) #19	C15orf61 (ENSCATG00000012736) #20	IQCH (ENSCATG00000042766) #21	AAGAB (ENSCATG00000043588) #22	SMAD3 (ENSCATG00000009733) #23	ENSCATG00000000879	ENSCATG00000035445 ##24	SMAD6 (ENSCATG00000002013) #26	ENSCATG00000019079 #27	LCTL (ENSCATG00000033622) #29	ZWILCH (ENSCATG00000036836) #30	ENSCATG00000031544 ##31	SNAPC5 (ENSCATG00000029571) #32	MAP2K1 (ENSCATG00000038127) #33	TIPIN (ENSCATG00000040328) #34	DIS3L (ENSCATG00000044661) #35	MEGF11 (ENSCATG00000032543) #36	RAB11A (ENSCATG00000034739) #37	DENND4A (ENSCATG00000030001)
Macaca	ANCESTRAL SPECIES	1	ENSGT00910000147053	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b ##24	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.a.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b.i.a #33	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b
Pig-tailed macaque	MODERN SPECIES	77	ENSMNEG00000024626	NOX5 (ENSMNEG00000032218) #7	SPESP1 (ENSMNEG00000024286) #8	ENSMNEG00000038547	ANP32A (ENSMNEG00000043179) #10	CORO2B (ENSMNEG00000028626) #11	ITGA11 (ENSMNEG00000031314) #12	FEM1B (ENSMNEG00000033491) #13	CLN6 (ENSMNEG00000034743) #14	CALML4 (ENSMNEG00000033193) #15	PIAS1 (ENSMNEG00000030278) #16	SKOR1 (ENSMNEG00000032875) #17	MAP2K5 (ENSMNEG00000043681) #19	C15orf61 (ENSMNEG00000034192) #20	IQCH (ENSMNEG00000034386) #21	AAGAB (ENSMNEG00000040056) #22	SMAD3 (ENSMNEG00000033094) #23	ENSMNEG00000030486	ENSMNEG00000032567 ##24	SMAD6 (ENSMNEG00000034598) #26	ENSMNEG00000031888 #27	LCTL (ENSMNEG00000002923) #29	ZWILCH (ENSMNEG00000034955) #30	ENSMNEG00000027886 #31	SNAPC5 (ENSMNEG00000032504) #32	MAP2K1 (ENSMNEG00000027299) #33	TIPIN (ENSMNEG00000031947) #34	DIS3L (ENSMNEG00000035066) #35	MEGF11 (ENSMNEG00000028540) #36	RAB11A (ENSMNEG00000043040) #37	DENND4A (ENSMNEG00000031159)
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00390000006043	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.a.a.a	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b ##24	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.a.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b.i.a #33	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b
Crab-eating macaque	MODERN SPECIES	17	ENSMFAG00000063916	NOX5 (ENSMFAG00000000728) #7	SPESP1 (ENSMFAG00000043000) #8	ENSMFAG00000050608	ANP32A (ENSMFAG00000043083) #10	CORO2B (ENSMFAG00000030894) #11	ITGA11 (ENSMFAG00000001090) #12	FEM1B (ENSMFAG00000064469) #13	CALML4 (ENSMFAG00000036145) #15	CLN6 (ENSMFAG00000042975) #14	PIAS1 (ENSMFAG00000038832) #16	SKOR1 (ENSMFAG00000001347) #17	MAP2K5 (ENSMFAG00000030100) #19	C15orf61 (ENSMFAG00000053739) #20	IQCH (ENSMFAG00000001124) #21	AAGAB (ENSMFAG00000040550) #22	SMAD3 (ENSMFAG00000001781) #23	ENSMFAG00000062655 ##24	ENSMFAG00000037066 #27	LCTL (ENSMFAG00000000458) #29	ZWILCH (ENSMFAG00000036529) #30	RPL4 (ENSMFAG00000036412) #31	SNAPC5 (ENSMFAG00000046383) #32	ENSMFAG00000063036	MAP2K1 (ENSMFAG00000036522) ##33	TIPIN (ENSMFAG00000031924) #34	DIS3L (ENSMFAG00000035628) #35	MEGF11 (ENSMFAG00000038247) #36	RAB11A (ENSMFAG00000000699) #37	ENSMFAG00000055472	ENSMFAG00000060677
Rhesus	MODERN SPECIES	17	ENSMMUG00000063000	ENSMMUG00000063948	NOX5 (ENSMMUG00000006230) #7	SPESP1 (ENSMMUG00000063939) #8	ENSMMUG00000064021	ANP32A (ENSMMUG00000022717) #10	CORO2B (ENSMMUG00000006356) #11	ITGA11 (ENSMMUG00000004026) #12	FEM1B (ENSMMUG00000008311) #13	CLN6 (ENSMMUG00000011703) #14	PIAS1 (ENSMMUG00000011699) #16	SKOR1 (ENSMMUG00000014485) #17	MAP2K5 (ENSMMUG00000014482) #19	C7H15orf61 (ENSMMUG00000060549) #20	IQCH (ENSMMUG00000015458) #21	AAGAB (ENSMMUG00000041415) #22	ENSMMUG00000051534	SMAD3 (ENSMMUG00000015455) #23	ENSMMUG00000057696 ##24	SMAD6 (ENSMMUG00000019018) #26	ENSMMUG00000063378	LCTL (ENSMMUG00000017447) #29	ZWILCH (ENSMMUG00000029588) #30	RPL4 (ENSMMUG00000016844) #31	SNAPC5 (ENSMMUG00000060148) #32	MAP2K1 (ENSMMUG00000016840) #33	TIPIN (ENSMMUG00000003695) #34	DIS3L (ENSMMUG00000003693) #35	MEGF11 (ENSMMUG00000008007) #36	RAB11A (ENSMMUG00000008006) #37	DENND4A (ENSMMUG00000022056)
Hominoidea	ANCESTRAL SPECIES	20	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.b ##31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b.i.a #33	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Hominidae	ANCESTRAL SPECIES	22	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.b ##31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b.i.a #33	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	22	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00910000147041 #27	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.b.a.a ##31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b.i.a #33	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	523	ARX (ENSGGOG00000023361)	ENSGGOG00000022441	POLA1 (ENSGGOG00000016072)	PCYT1B (ENSGGOG00000002402)	PDK3 (ENSGGOG00000006157)	SUPT20HL2 (ENSGGOG00000022110)	ZFX (ENSGGOG00000004053)	EIF2S3 (ENSGGOG00000024609)	KLHL15 (ENSGGOG00000028200)	CXorf58 (ENSGGOG00000016257)	APOO (ENSGGOG00000001200)	SAT1 (ENSGGOG00000027873)	ACOT9 (ENSGGOG00000015401)	PRDX4 (ENSGGOG00000026790)	PTCHD1 (ENSGGOG00000044059)	ENSGGOG00000036181 #22	ENSGGOG00000026912	CBLL2 (ENSGGOG00000034821)	ENSGGOG00000003961	ENSGGOG00000003123	MBTPS2 (ENSGGOG00000012064)	SMPX (ENSGGOG00000004353)	KLHL34 (ENSGGOG00000002780)	CNKSR2 (ENSGGOG00000013768)	RPS6KA3 (ENSGGOG00000008837)	ENSGGOG00000012186	MAP7D2 (ENSGGOG00000007760)	BCLAF3 (ENSGGOG00000009453)	SH3KBP1 (ENSGGOG00000008333)	MAP3K15 (ENSGGOG00000008317)	ENSGGOG00000013574
Gorilla	MODERN SPECIES	6	CIAPIN1 (ENSGGOG00000039236)	ANP32A (ENSGGOG00000015417) #10	CORO2B (ENSGGOG00000013046) #11	ITGA11 (ENSGGOG00000013093) #12	FEM1B (ENSGGOG00000028408) #13	CLN6 (ENSGGOG00000007840) #14	ENSGGOG00000007834 #15	ENSGGOG00000040187 #15	PIAS1 (ENSGGOG00000016852) #16	ENSGGOG00000004743 #17	ENSGGOG00000027762	ENSGGOG00000042211 #18	MAP2K5 (ENSGGOG00000004734) #19	C15orf61 (ENSGGOG00000004732) #20	IQCH (ENSGGOG00000004722) #21	ENSGGOG00000004714 #22	ENSGGOG00000012045	ENSGGOG00000038329 #27	SMAD6 (ENSGGOG00000013002) #26	LCTL (ENSGGOG00000006350) #29	ZWILCH (ENSGGOG00000003703) #30	ENSGGOG00000003695 ##31	SNAPC5 (ENSGGOG00000003693) #32	ENSGGOG00000042752	MAP2K1 (ENSGGOG00000003687) #33	ENSGGOG00000024529	TIPIN (ENSGGOG00000000061) #34	DIS3L (ENSGGOG00000001549) #35	MEGF11 (ENSGGOG00000000293) #36	RAB11A (ENSGGOG00000014252) #37	ENSGGOG00000022841
Homo/Pan group	ANCESTRAL SPECIES	21	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00910000147041 #27	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.b.a.a ##31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b.i.a #33	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b
Pan	ANCESTRAL SPECIES	20	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00390000011417.l	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00910000147041 #27	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.b.a.a ##31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b.i.a #33	ENSGT00510000046986.m.a	ENSGT00390000005764.g.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B
Chimpanzee	MODERN SPECIES	6	NOX5 (ENSPTRG00000007222) #7	SPESP1 (ENSPTRG00000007221) #8	ENSPTRG00000050341	ANP32A (ENSPTRG00000007219) #10	CORO2B (ENSPTRG00000007218) #11	ITGA11 (ENSPTRG00000007215) #12	FEM1B (ENSPTRG00000007214) #13	CLN6 (ENSPTRG00000007212) #14	CALML4 (ENSPTRG00000007211) #15	PIAS1 (ENSPTRG00000007210) #16	SKOR1 (ENSPTRG00000007209) #17	ENSPTRG00000048990 #18	MAP2K5 (ENSPTRG00000007207) #19	C15H15orf61 (ENSPTRG00000030250) #20	IQCH (ENSPTRG00000007205) #21	AAGAB (ENSPTRG00000007202) #22	SMAD3 (ENSPTRG00000007199) #23	ENSPTRG00000047146	ENSPTRG00000044014 #27	SMAD6 (ENSPTRG00000007198) #26	LCTL (ENSPTRG00000007197) #29	ZWILCH (ENSPTRG00000007196) #30	RPL4 (ENSPTRG00000007195) ##31	SNAPC5 (ENSPTRG00000007194) #32	ENSPTRG00000049603	MAP2K1 (ENSPTRG00000007193) #33	ENSPTRG00000051889	TIPIN (ENSPTRG00000007192) #34	DIS3L (ENSPTRG00000007191) #35	MEGF11 (ENSPTRG00000007189) #36	RAB11A (ENSPTRG00000044358) #37
Bonobo	MODERN SPECIES	6	NOX5 (ENSPPAG00000038195) #7	SPESP1 (ENSPPAG00000040777) #8	ENSPPAG00000020890	ENSPPAG00000034193 #10	CORO2B (ENSPPAG00000030458) #11	ITGA11 (ENSPPAG00000030683) #12	FEM1B (ENSPPAG00000030523) #13	CLN6 (ENSPPAG00000030498) #14	ENSPPAG00000033363 #15	PIAS1 (ENSPPAG00000041443) #16	ENSPPAG00000036055 #17	ENSPPAG00000033373 #18	MAP2K5 (ENSPPAG00000036945) #19	C15orf61 (ENSPPAG00000026999) #20	IQCH (ENSPPAG00000042974) #21	AAGAB (ENSPPAG00000041055) #22	SMAD3 (ENSPPAG00000033769) #23	ENSPPAG00000020485	ENSPPAG00000036915 #27	SMAD6 (ENSPPAG00000027722) #26	LCTL (ENSPPAG00000040836) #29	ZWILCH (ENSPPAG00000033861) #30	ENSPPAG00000035309 ##31	SNAPC5 (ENSPPAG00000041196) #32	ENSPPAG00000033063	MAP2K1 (ENSPPAG00000028577) #33	ENSPPAG00000038145	ENSPPAG00000041842	TIPIN (ENSPPAG00000033427) #34	DIS3L (ENSPPAG00000019888) #35	MEGF11 (ENSPPAG00000043580) #36
Human	MODERN SPECIES	6	NOX5 (ENSG00000255346) #7	NOX5 (ENSG00000290203)	SPESP1 (ENSG00000258484) #8	ANP32A (ENSG00000140350) #10	CORO2B (ENSG00000103647) #11	ITGA11 (ENSG00000137809) #12	FEM1B (ENSG00000169018) #13	CLN6 (ENSG00000128973) #14	CALML4 (ENSG00000129007) #15	ENSG00000260007	PIAS1 (ENSG00000033800) #16	SKOR1 (ENSG00000188779) #17	MAP2K5 (ENSG00000137764) #19	C15orf61 (ENSG00000189227) #20	IQCH (ENSG00000103599) #21	AAGAB (ENSG00000103591) #22	SMAD3 (ENSG00000166949) #23	SMAD6 (ENSG00000137834) #26	LCTL (ENSG00000188501) #29	ZWILCH (ENSG00000174442) #30	RPL4 (ENSG00000174444) ##31	SNAPC5 (ENSG00000174446) #32	MAP2K1 (ENSG00000169032) #33	TIPIN (ENSG00000075131) #34	DIS3L (ENSG00000166938) #35	MEGF11 (ENSG00000157890) #36	RAB11A (ENSG00000103769) #37	DENND4A (ENSG00000174485)	SLC24A1 (ENSG00000074621)	INTS14 (ENSG00000138614)	HACD3 (ENSG00000074696)
Orangutan	MODERN SPECIES	6	PAQR5 (ENSPPYG00000006599)	GLCE (ENSPPYG00000006598)	NOX5 (ENSPPYG00000006596) #7	SPESP1 (ENSPPYG00000029816) #8	ENSPPYG00000006595 #10	CORO2B (ENSPPYG00000006594) #11	ITGA11 (ENSPPYG00000006593) #12	FEM1B (ENSPPYG00000032577) #13	CLN6 (ENSPPYG00000006591) #14	ENSPPYG00000006590 #15	PIAS1 (ENSPPYG00000006589) #16	SKOR1 (ENSPPYG00000006588) #17	MAP2K5 (ENSPPYG00000006587) #19	C15orf61 (ENSPPYG00000006586) #20	IQCH (ENSPPYG00000006585) #21	AAGAB (ENSPPYG00000006584) #22	SMAD3 (ENSPPYG00000006583) #23	ENSPPYG00000006582	ENSPPYG00000006581 #26	LCTL (ENSPPYG00000006580) #29	ZWILCH (ENSPPYG00000006579) #30	RPL4 (ENSPPYG00000006578) ##31	SNAPC5 (ENSPPYG00000040277) #32	ENSPPYG00000032290	MAP2K1 (ENSPPYG00000006576) #33	TIPIN (ENSPPYG00000031745) #34	DIS3L (ENSPPYG00000006575) #35	MEGF11 (ENSPPYG00000039385) #36	RAB11A (ENSPPYG00000006573) #37	DENND4A (ENSPPYG00000006572)	SLC24A1 (ENSPPYG00000006571)
Gibbon	MODERN SPECIES	21	NOX5 (ENSNLEG00000013408) #7	SPESP1 (ENSNLEG00000013404) #8	ANP32A (ENSNLEG00000013347) #10	CORO2B (ENSNLEG00000013333) #11	ITGA11 (ENSNLEG00000013220) #12	FEM1B (ENSNLEG00000013213) #13	CLN6 (ENSNLEG00000013178) #14	ENSNLEG00000013164 #15	PIAS1 (ENSNLEG00000013103) #16	ENSNLEG00000031759	SKOR1 (ENSNLEG00000013091) #17	ENSNLEG00000032785 #18	MAP2K5 (ENSNLEG00000013066) #19	C15orf61 (ENSNLEG00000013065) #20	IQCH (ENSNLEG00000013025) #21	AAGAB (ENSNLEG00000013006) #22	SMAD3 (ENSNLEG00000012983) #23	ENSNLEG00000028836	SMAD6 (ENSNLEG00000032864) #26	LCTL (ENSNLEG00000012956) #29	ZWILCH (ENSNLEG00000012950) #30	ENSNLEG00000012938 #31	SNAPC5 (ENSNLEG00000033124) #32	MAP2K1 (ENSNLEG00000012913) #33	TIPIN (ENSNLEG00000012909) #34	DIS3L (ENSNLEG00000012891) #35	MEGF11 (ENSNLEG00000012863) #36	RAB11A (ENSNLEG00000012853) #37	DENND4A (ENSNLEG00000012772)	ENSNLEG00000012767	INTS14 (ENSNLEG00000012745)
Platyrrhini	ANCESTRAL SPECIES	27	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00390000011417.l.b	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00910000147890 #28	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.a.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764.g.a.a #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Cebidae	ANCESTRAL SPECIES	29	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b.ub #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00910000147890 #28	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.a.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00940000170330	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Marmoset	MODERN SPECIES	1	ENSCJAG00000002339 #10	ENSCJAG00000086993	CORO2B (ENSCJAG00000002319) #11	ITGA11 (ENSCJAG00000002269) #12	FEM1B (ENSCJAG00000002264) #13	ENSCJAG00000074396	ENSCJAG00000002250 #14	CALML4 (ENSCJAG00000002243) #15	PIAS1 (ENSCJAG00000002224) #16	SKOR1 (ENSCJAG00000002196) #17	MAP2K5 (ENSCJAG00000002156) #19	C15orf61 (ENSCJAG00000054412) #20	ENSCJAG00000073121	ENSCJAG00000051609	IQCH (ENSCJAG00000002130) #21	AAGAB (ENSCJAG00000002113) #22	SMAD3 (ENSCJAG00000002088) #23	SMAD6 (ENSCJAG00000044644) #26	LCTL (ENSCJAG00000007558) #29	ZWILCH (ENSCJAG00000007524) #30	ENSCJAG00000007491 #31	SNAPC5 (ENSCJAG00000070895) #32	MAP2K1 (ENSCJAG00000007460) #33	ENSCJAG00000085355	DIS3L (ENSCJAG00000007411) #35	MEGF11 (ENSCJAG00000007353) #36	ENSCJAG00000083582	RAB11A (ENSCJAG00000042037) #37	DENND4A (ENSCJAG00000007209)	SLC24A1 (ENSCJAG00000007180)	INTS14 (ENSCJAG00000007118)
Cebidae_a	ANCESTRAL SPECIES	39	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT01020000230346.C.c.b.a.b.a.b	ENSGT00950000182907.a.b.b.b.tb ##10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00910000147890 #28	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a.a.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Capuchin	MODERN SPECIES	248																AAGAB (ENSCCAG00000024283) #22	SMAD3 (ENSCCAG00000020767) #23	SMAD6 (ENSCCAG00000026913) #26	LCTL (ENSCCAG00000000633) #29	ZWILCH (ENSCCAG00000027333) #30	ENSCCAG00000022533 ##31	SNAPC5 (ENSCCAG00000020529) #32	MAP2K1 (ENSCCAG00000024279) #33	RHAG (ENSCCAG00000027136)	CRISP2 (ENSCCAG00000035454)	CRISP3 (ENSCCAG00000027207)	PGK2 (ENSCCAG00000004646)	CRISP1 (ENSCCAG00000024689)	DEFB114 (ENSCCAG00000027397)	DEFB113 (ENSCCAG00000014271)	DEFB110 (ENSCCAG00000030485)
Bolivian squirrel monkey	MODERN SPECIES	76	SPESP1 (ENSSBOG00000021264) #8	ENSSBOG00000025043	ENSSBOG00000020197	ANP32A (ENSSBOG00000030699) #10	CORO2B (ENSSBOG00000019665) #11	ITGA11 (ENSSBOG00000030635) #12	FEM1B (ENSSBOG00000030419) #13	CLN6 (ENSSBOG00000035779) #14	CALML4 (ENSSBOG00000031073) #15	PIAS1 (ENSSBOG00000030212) #16	ENSSBOG00000032111	SKOR1 (ENSSBOG00000031705) #17	MAP2K5 (ENSSBOG00000028179) #19	C15orf61 (ENSSBOG00000022188) #20	IQCH (ENSSBOG00000024935) #21	AAGAB (ENSSBOG00000035741) #22	SMAD3 (ENSSBOG00000020894) #23	ENSSBOG00000022363 #26	LCTL (ENSSBOG00000023227) #29	ENSSBOG00000031231 #28	ZWILCH (ENSSBOG00000033149) #30	ENSSBOG00000015863 #31	SNAPC5 (ENSSBOG00000028815) #32	MAP2K1 (ENSSBOG00000023083) #33
Mas night monkey	MODERN SPECIES	1197	ENSANAG00000026447 ##10	CORO2B (ENSANAG00000035767) #11	ITGA11 (ENSANAG00000024399) #12	FEM1B (ENSANAG00000036003) #13	CLN6 (ENSANAG00000031462) #14	ENSANAG00000022199	ENSANAG00000035306	CALML4 (ENSANAG00000036088) #15	PIAS1 (ENSANAG00000023771) #16	SKOR1 (ENSANAG00000026767) #17	MAP2K5 (ENSANAG00000026610) #19	ENSANAG00000033304 #18	C15orf61 (ENSANAG00000019347) #20	IQCH (ENSANAG00000037205) #21	ENSANAG00000037777	AAGAB (ENSANAG00000038049) #22	ENSANAG00000031752	SMAD3 (ENSANAG00000001462) #23	SMAD6 (ENSANAG00000020717) #26	ENSANAG00000024963 #27	ENSANAG00000028396	UHRF2 (ENSANAG00000025453)	GLDC (ENSANAG00000034753)	KDM4C (ENSANAG00000024798)	ENSANAG00000033377	DMAC1 (ENSANAG00000029014)
Tarsier	MODERN SPECIES	1316													MAP2K5 (ENSTSYG00000013834) #19	CUNH15orf61 (ENSTSYG00000014554) #20	IQCH (ENSTSYG00000010472) #21	AAGAB (ENSTSYG00000010466) #22	SMAD3 (ENSTSYG00000025697) #23
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.cb.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Mouse lemur	MODERN SPECIES	22	DUOX2 (ENSMICG00000009164)	DUOXA2 (ENSMICG00000048012)	DUOXA1 (ENSMICG00000009195)	DUOX1 (ENSMICG00000009207)	SHF (ENSMICG00000033037)	SLC28A2 (ENSMICG00000009242)	ENSMICG00000032669	GATM (ENSMICG00000005565)	SPATA5L1 (ENSMICG00000035916)	C15orf48 (ENSMICG00000033332)	SLC30A4 (ENSMICG00000005588)	BLOC1S6 (ENSMICG00000005595)	ENSMICG00000005597	ENSMICG00000041604	IQCH (ENSMICG00000006127) #21	AAGAB (ENSMICG00000044554) #22	SMAD3 (ENSMICG00000006119) #23	SMAD6 (ENSMICG00000035205) #26	LCTL (ENSMICG00000004455) #29	ZWILCH (ENSMICG00000004429) #30	RPL4 (ENSMICG00000004419) #31	SNAPC5 (ENSMICG00000004401) #32	MAP2K1 (ENSMICG00000004393) #33	TIPIN (ENSMICG00000004386) #34	DIS3L (ENSMICG00000004374) #35	MEGF11 (ENSMICG00000004354) #36	ENSMICG00000035335	RAB11A (ENSMICG00000041504) #37	DENND4A (ENSMICG00000004000)	ENSMICG00000044235	ENSMICG00000028970
Lemuriformes_a	ANCESTRAL SPECIES	197	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23
Coquerels sifaka	MODERN SPECIES	733												SKOR1 (ENSPCOG00000016399) #17	MAP2K5 (ENSPCOG00000020293) #19	C15orf61 (ENSPCOG00000018275) #20	IQCH (ENSPCOG00000021949) #21	AAGAB (ENSPCOG00000016985) #22	SMAD3 (ENSPCOG00000023000) #23
Greater bamboo lemur	MODERN SPECIES	313	PAQR5 (ENSPSMG00000002489)	GLCE (ENSPSMG00000002447)	SPESP1 (ENSPSMG00000002424) #8	ENSPSMG00000002406 #10	CORO2B (ENSPSMG00000002320) #11	ITGA11 (ENSPSMG00000002246) #12	FEM1B (ENSPSMG00000002150) #13	CLN6 (ENSPSMG00000002045) #14	CALML4 (ENSPSMG00000001943) #15	PIAS1 (ENSPSMG00000001932) #16	ENSPSMG00000001902	SKOR1 (ENSPSMG00000001884) #17	MAP2K5 (ENSPSMG00000001626) #19	C15orf61 (ENSPSMG00000001411) #20	IQCH (ENSPSMG00000001397) #21	AAGAB (ENSPSMG00000001327) #22	SMAD3 (ENSPSMG00000001058) #23	ENSPSMG00000000854	SMAD6 (ENSPSMG00000000845) #26
Bushbaby	MODERN SPECIES	126	KIF23 (ENSOGAG00000034448)	PAQR5 (ENSOGAG00000012036)	GLCE (ENSOGAG00000029673)	ENSOGAG00000003058 #10	CORO2B (ENSOGAG00000026008) #11	ITGA11 (ENSOGAG00000014144) #12	FEM1B (ENSOGAG00000014143) #13	CLN6 (ENSOGAG00000014142) #14	CALML4 (ENSOGAG00000014140) #15	PIAS1 (ENSOGAG00000014134) #16	SKOR1 (ENSOGAG00000025983) #17	MAP2K5 (ENSOGAG00000002480) #19	C15orf61 (ENSOGAG00000027440) #20	ENSOGAG00000028206	IQCH (ENSOGAG00000014224) #21	AAGAB (ENSOGAG00000014219) #22	SMAD3 (ENSOGAG00000014217) #23	ENSOGAG00000029245	ENSOGAG00000034467	SMAD6 (ENSOGAG00000015387) #26	LCTL (ENSOGAG00000015893) #29	ZWILCH (ENSOGAG00000015886) #30	ENSOGAG00000015884 ##31	SNAPC5 (ENSOGAG00000015881) #32	MAP2K1 (ENSOGAG00000015876) #33	ENSOGAG00000028488 #34	DIS3L (ENSOGAG00000024086) #35	ENSOGAG00000034665	MEGF11 (ENSOGAG00000007644) #36	RAB11A (ENSOGAG00000007642) #37	DENND4A (ENSOGAG00000013678)
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Tree shrew	MODERN SPECIES	3464															IQCH (ENSTBEG00000005168) #21	AAGAB (ENSTBEG00000004459) #22	SMAD3 (ENSTBEG00000003884) #23
Glires	ANCESTRAL SPECIES	15	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Lagomorpha	ANCESTRAL SPECIES	7	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d.j	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00950000183167.a.b.a	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Rabbit	MODERN SPECIES	8	ENSOCUG00000009207	HEXA (ENSOCUG00000009190)	CELF6 (ENSOCUG00000021663)	PARP6 (ENSOCUG00000004374)	ENSOCUG00000006119	GRAMD2A (ENSOCUG00000006107)	SENP8 (ENSOCUG00000026054)	MYO9A (ENSOCUG00000017425)	ENSOCUG00000036279	ITGA11 (ENSOCUG00000017726) #12	FEM1B (ENSOCUG00000026586) #13	CLN6 (ENSOCUG00000017533) #14	PIAS1 (ENSOCUG00000000618) #16	MAP2K5 (ENSOCUG00000009024) #19	IQCH (ENSOCUG00000006647) #21	AAGAB (ENSOCUG00000006644) #22	ENSOCUG00000039204	SMAD3 (ENSOCUG00000029601) #23	ENSOCUG00000014186	ENSOCUG00000006134 #26	LCTL (ENSOCUG00000021771) #29	ZWILCH (ENSOCUG00000008800) #30	ENSOCUG00000008794 #31	SNAPC5 (ENSOCUG00000039231) #32	MAP2K1 (ENSOCUG00000008782) #33	ENSOCUG00000023060	TIPIN (ENSOCUG00000002212) #34	DIS3L (ENSOCUG00000002206) #35	MEGF11 (ENSOCUG00000014760) #36	RAB11A (ENSOCUG00000014755) #37	DENND4A (ENSOCUG00000007953)
Pika	MODERN SPECIES	1524																AAGAB (ENSOPRG00000015012) #22	SMAD3 (ENSOPRG00000014996) #23	SMAD6 (ENSOPRG00000014974) #26	IQCH (ENSOPRG00000014936) #21
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Kangaroo rat	MODERN SPECIES	330												Skor1 (ENSDORG00000005677) #17	Map2k5 (ENSDORG00000005673) #19	2300009A05Rik (ENSDORG00000028687) #20	Iqch (ENSDORG00000006468) #21	ENSDORG00000026611 #22	Smad3 (ENSDORG00000029949) #23	ENSDORG00000026894	Smad6 (ENSDORG00000028234) #26	Lctl (ENSDORG00000016291) #29	Zwilch (ENSDORG00000016288) #30	Rpl4 (ENSDORG00000016287) #31	Snapc5 (ENSDORG00000030051) #32	Map2k1 (ENSDORG00000001301) #33	Tipin (ENSDORG00000028988) #34	Dis3l (ENSDORG00000014909) #35	Megf11 (ENSDORG00000001008) #36	ENSDORG00000026125	ENSDORG00000028034 #37	Dennd4a (ENSDORG00000002146)	Slc24a1 (ENSDORG00000007185)
Myomorpha	ANCESTRAL SPECIES	25	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Muroidea	ANCESTRAL SPECIES	23	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.kb #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Golden Hamster	MODERN SPECIES	672	ENSMAUG00000008843	ENSMAUG00000007063	Kif23 (ENSMAUG00000009848)	Paqr5 (ENSMAUG00000009377)	Glce (ENSMAUG00000013447)	Spesp1 (ENSMAUG00000008837) #8	Anp32a (ENSMAUG00000000632) #10	Coro2b (ENSMAUG00000009618) #11	Itga11 (ENSMAUG00000002222) #12	Cln6 (ENSMAUG00000009546) #14	Calml4 (ENSMAUG00000015006) #15	Pias1 (ENSMAUG00000000785) #16	Skor1 (ENSMAUG00000020780) #17	Map2k5 (ENSMAUG00000015370) #19	Iqch (ENSMAUG00000004333) #21	Aagab (ENSMAUG00000005383) #22	Smad3 (ENSMAUG00000022258) #23	Smad6 (ENSMAUG00000009859) #26	Lctl (ENSMAUG00000009957) #29	Zwilch (ENSMAUG00000021210) #30	Rpl4 (ENSMAUG00000018867) #31	Snapc5 (ENSMAUG00000008645) #32	Map2k1 (ENSMAUG00000011379) #33	Tipin (ENSMAUG00000012421) #34	Dis3l (ENSMAUG00000008265) #35	Megf11 (ENSMAUG00000003129) #36	Rab11a (ENSMAUG00000018551) #37	Dennd4a (ENSMAUG00000018527)	Slc24a1 (ENSMAUG00000012813)	Ints14 (ENSMAUG00000020937)	Hacd3 (ENSMAUG00000004278)
Chinese hamster chok1gshd	MODERN SPECIES	284	Paqr5 (ENSCGRG00001021586)	Glce (ENSCGRG00001019156)	Spesp1 (ENSCGRG00001015906) #8	ENSCGRG00001022637 #10	Coro2b (ENSCGRG00001025051) #11	Itga11 (ENSCGRG00001016586) #12	Fem1b (ENSCGRG00001018487) #13	Cln6 (ENSCGRG00001016348) #14	Calml4 (ENSCGRG00001023410) #15	Pias1 (ENSCGRG00001018818) #16	Skor1 (ENSCGRG00001000300) #17	Map2k5 (ENSCGRG00001024707) #19	2300009A05Rik (ENSCGRG00001009275) #20	ENSCGRG00001000811	Iqch (ENSCGRG00001006084) #21	Aagab (ENSCGRG00001020082) #22	Smad3 (ENSCGRG00001013999) #23	Smad6 (ENSCGRG00001002733) #26	Lctl (ENSCGRG00001017716) #29	Zwilch (ENSCGRG00001018206) #30	Snapc5 (ENSCGRG00001013968) #32	Tipin (ENSCGRG00001018146) #34	Dis3l (ENSCGRG00001017825) #35	Megf11 (ENSCGRG00001019210) #36	Rab11a (ENSCGRG00001023313) #37	Dennd4a (ENSCGRG00001019979)	Slc24a1 (ENSCGRG00001023812)	Ints14 (ENSCGRG00001022061)	Hacd3 (ENSCGRG00001019214)	Dpp8 (ENSCGRG00001024771)	Igdcc4 (ENSCGRG00001004819)
Cricetidae_B	ANCESTRAL SPECIES	24	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Prairie vole	MODERN SPECIES	13	Glce (ENSMOCG00000019169)	Spesp1 (ENSMOCG00000016907) #8	ENSMOCG00000014776 #10	ENSMOCG00000004428 #10	Coro2b (ENSMOCG00000011097) #11	Itga11 (ENSMOCG00000003119) #12	Fem1b (ENSMOCG00000005442) #13	Cln6 (ENSMOCG00000021992) #14	Calml4 (ENSMOCG00000018493) #15	Pias1 (ENSMOCG00000022074) #16	ENSMOCG00000019235	Skor1 (ENSMOCG00000018261) #17	Map2k5 (ENSMOCG00000022058) #19	2300009A05Rik (ENSMOCG00000013991) #20	Iqch (ENSMOCG00000016873) #21	Aagab (ENSMOCG00000021340) #22	Smad3 (ENSMOCG00000018490) #23	Smad6 (ENSMOCG00000014458) #26	Lctl (ENSMOCG00000004744) #29	Zwilch (ENSMOCG00000017159) #30	ENSMOCG00000021901 #31	Snapc5 (ENSMOCG00000015348) #32	Map2k1 (ENSMOCG00000013072) #33	Tipin (ENSMOCG00000010343) #34	Dis3l (ENSMOCG00000005278) #35	Megf11 (ENSMOCG00000003573) #36	Rab11a (ENSMOCG00000021138) #37	Dennd4a (ENSMOCG00000008521)	Slc24a1 (ENSMOCG00000002968)	Ints14 (ENSMOCG00000020364)	Hacd3 (ENSMOCG00000004995)
Northern American deer mouse	MODERN SPECIES	20	Glce (ENSPEMG00000030703)	ENSPEMG00000017757 #8	Anp32a (ENSPEMG00000017392) #10	Coro2b (ENSPEMG00000016326) #11	Itga11 (ENSPEMG00000014149) #12	Fem1b (ENSPEMG00000028410) #13	ENSPEMG00000000682	Cln6 (ENSPEMG00000030484) #14	Calml4 (ENSPEMG00000012833) #15	Pias1 (ENSPEMG00000012119) #16	Skor1 (ENSPEMG00000010499) #17	Map2k5 (ENSPEMG00000010361) #19	2300009A05Rik (ENSPEMG00000009306) #20	Iqch (ENSPEMG00000005753) #21	ENSPEMG00000028831	Aagab (ENSPEMG00000018465) #22	Smad3 (ENSPEMG00000028676) #23	Smad6 (ENSPEMG00000017040) #26	Lctl (ENSPEMG00000016229) #29	Zwilch (ENSPEMG00000014485) #30	Rpl4 (ENSPEMG00000012064) #31	Snapc5 (ENSPEMG00000007852) #32	Map2k1 (ENSPEMG00000007282) #33	Tipin (ENSPEMG00000002370) #34	Dis3l (ENSPEMG00000001213) #35	Megf11 (ENSPEMG00000017797) #36	ENSPEMG00000021125 #37	Dennd4a (ENSPEMG00000022452)	Slc24a1 (ENSPEMG00000022814)	Ints14 (ENSPEMG00000008550)	Hacd3 (ENSPEMG00000008076)
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Mus	ANCESTRAL SPECIES	4	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859.e.b #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00940000154925.c.a	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Mouse	MODERN SPECIES	18	Kif23 (ENSMUSG00000032254)	Paqr5 (ENSMUSG00000032278)	Glce (ENSMUSG00000032252)	Spesp1 (ENSMUSG00000046846) #8	Anp32a (ENSMUSG00000032249) #10	Coro2b (ENSMUSG00000041729) #11	Itga11 (ENSMUSG00000032243) #12	Fem1b (ENSMUSG00000032244) #13	Cln6 (ENSMUSG00000032245) #14	Calml4 (ENSMUSG00000032246) #15	Pias1 (ENSMUSG00000032405) #16	Skor1 (ENSMUSG00000022245) #17	Map2k5 (ENSMUSG00000058444) #19	2300009A05Rik (ENSMUSG00000032403) #20	Iqch (ENSMUSG00000037801) #21	Aagab (ENSMUSG00000037257) #22	Smad3 (ENSMUSG00000032402) #23	Smad6 (ENSMUSG00000036867) #26	Lctl (ENSMUSG00000032401) #29	Zwilch (ENSMUSG00000032400) #30	Rpl4 (ENSMUSG00000032399) #31	Snapc5 (ENSMUSG00000032398) #32	Map2k1 (ENSMUSG00000004936) #33	Uchl4 (ENSMUSG00000035337)	Tipin (ENSMUSG00000032397) #34	Dis3l (ENSMUSG00000032396) #35	Megf11 (ENSMUSG00000036466) #36	Rab11a (ENSMUSG00000004771) #37	Dennd4a (ENSMUSG00000053641)	Slc24a1 (ENSMUSG00000034452)	Ints14 (ENSMUSG00000034263)
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859.e.b #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00940000154925.c.a	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
spretus	MODERN SPECIES	18	Paqr5 (MGP_SPRETEiJ_G0033458)	Glce (MGP_SPRETEiJ_G0033459)	Spesp1 (MGP_SPRETEiJ_G0033460) #8	Anp32a (MGP_SPRETEiJ_G0033461) #10	Coro2b (MGP_SPRETEiJ_G0033462) #11	Itga11 (MGP_SPRETEiJ_G0033463) #12	Fem1b (MGP_SPRETEiJ_G0033464) #13	Cln6 (MGP_SPRETEiJ_G0033465) #14	MGP_SPRETEiJ_G0033466	Calml4 (MGP_SPRETEiJ_G0033467) #15	Pias1 (MGP_SPRETEiJ_G0033468) #16	Skor1 (MGP_SPRETEiJ_G0033469) #17	Map2k5 (MGP_SPRETEiJ_G0033470) #19	2300009A05Rik (MGP_SPRETEiJ_G0033471) #20	Iqch (MGP_SPRETEiJ_G0033472) #21	Aagab (MGP_SPRETEiJ_G0033473) #22	Smad3 (MGP_SPRETEiJ_G0033474) #23	Smad6 (MGP_SPRETEiJ_G0033475) #26	Lctl (MGP_SPRETEiJ_G0033476) #29	Zwilch (MGP_SPRETEiJ_G0033477) #30	Rpl4 (MGP_SPRETEiJ_G0033478) #31	Snapc5 (MGP_SPRETEiJ_G0033479) #32	Map2k1 (MGP_SPRETEiJ_G0033480) #33	MGP_SPRETEiJ_G0033481	Tipin (MGP_SPRETEiJ_G0033482) #34	Dis3l (MGP_SPRETEiJ_G0033483) #35	Megf11 (MGP_SPRETEiJ_G0033484) #36	Rab11a (MGP_SPRETEiJ_G0033485) #37	Dennd4a (MGP_SPRETEiJ_G0033486)	Slc24a1 (MGP_SPRETEiJ_G0033487)	Ints14 (MGP_SPRETEiJ_G0033488)
Steppe mouse	MODERN SPECIES	3365	Paqr5 (ENSMSIG00000001567)	Glce (ENSMSIG00000001614)	Spesp1 (ENSMSIG00000001679) #8	ENSMSIG00000001693 #10	Coro2b (ENSMSIG00000001799) #11	Itga11 (ENSMSIG00000001884) #12	Fem1b (ENSMSIG00000001951) #13	Cln6 (ENSMSIG00000001974) #14	ENSMSIG00000001996 #15	Pias1 (ENSMSIG00000002027) #16	Skor1 (ENSMSIG00000002179) #17	Map2k5 (ENSMSIG00000002321) #19	2300009A05Rik (ENSMSIG00000002599) #20	Iqch (ENSMSIG00000002651) #21	ENSMSIG00000003630	Aagab (ENSMSIG00000003642) #22	Smad3 (ENSMSIG00000003679) #23	ENSMSIG00000003710	Smad6 (ENSMSIG00000003718) #26	ENSMSIG00000003749	ENSMSIG00000003769	Lctl (ENSMSIG00000003776) #29	Zwilch (ENSMSIG00000003872) #30	Rpl4 (ENSMSIG00000004124) #31	Snapc5 (ENSMSIG00000004231) #32	Map2k1 (ENSMSIG00000004246) #33	Uchl4 (ENSMSIG00000004289)	Tipin (ENSMSIG00000004296) #34	Dis3l (ENSMSIG00000004353) #35	Megf11 (ENSMSIG00000004481) #36	Rab11a (ENSMSIG00000004938) #37
Ryukyu mouse	MODERN SPECIES	18	Kif23 (MGP_CAROLIEiJ_G0032319)	Paqr5 (MGP_CAROLIEiJ_G0032320)	Glce (MGP_CAROLIEiJ_G0032321)	Spesp1 (MGP_CAROLIEiJ_G0032322) #8	Anp32a (MGP_CAROLIEiJ_G0032323) #10	Coro2b (MGP_CAROLIEiJ_G0032324) #11	Itga11 (MGP_CAROLIEiJ_G0032325) #12	Fem1b (MGP_CAROLIEiJ_G0032326) #13	Cln6 (MGP_CAROLIEiJ_G0032327) #14	Calml4 (MGP_CAROLIEiJ_G0032328) #15	Pias1 (MGP_CAROLIEiJ_G0032329) #16	Skor1 (MGP_CAROLIEiJ_G0032330) #17	Map2k5 (MGP_CAROLIEiJ_G0032331) #19	2300009A05Rik (MGP_CAROLIEiJ_G0032332) #20	Iqch (MGP_CAROLIEiJ_G0032333) #21	Aagab (MGP_CAROLIEiJ_G0032334) #22	Smad3 (MGP_CAROLIEiJ_G0032335) #23	Smad6 (MGP_CAROLIEiJ_G0032336) #26	Lctl (MGP_CAROLIEiJ_G0032337) #29	Zwilch (MGP_CAROLIEiJ_G0032338) #30	Rpl4 (MGP_CAROLIEiJ_G0032339) #31	Snapc5 (MGP_CAROLIEiJ_G0032340) #32	Map2k1 (MGP_CAROLIEiJ_G0032341) #33	MGP_CAROLIEiJ_G0032342	Tipin (MGP_CAROLIEiJ_G0032343) #34	Dis3l (MGP_CAROLIEiJ_G0032344) #35	Megf11 (MGP_CAROLIEiJ_G0032345) #36	Rab11a (MGP_CAROLIEiJ_G0032346) #37	Dennd4a (MGP_CAROLIEiJ_G0032347)	Slc24a1 (MGP_CAROLIEiJ_G0032348)	Ints14 (MGP_CAROLIEiJ_G0032349)
Shrew mouse	MODERN SPECIES	1	Kif23 (MGP_PahariEiJ_G0015185)	Paqr5 (MGP_PahariEiJ_G0015186)	Glce (MGP_PahariEiJ_G0015187)	Spesp1 (MGP_PahariEiJ_G0015188) #8	Anp32a (MGP_PahariEiJ_G0015189) #10	Coro2b (MGP_PahariEiJ_G0015190) #11	Itga11 (MGP_PahariEiJ_G0015191) #12	Fem1b (MGP_PahariEiJ_G0015192) #13	MGP_PahariEiJ_G0015193	Calml4 (MGP_PahariEiJ_G0015194) #15	Pias1 (MGP_PahariEiJ_G0015195) #16	Skor1 (MGP_PahariEiJ_G0015196) #17	Map2k5 (MGP_PahariEiJ_G0015197) #19	2300009A05Rik (MGP_PahariEiJ_G0015198) #20	Iqch (MGP_PahariEiJ_G0015199) #21	Aagab (MGP_PahariEiJ_G0015200) #22	Smad3 (MGP_PahariEiJ_G0015201) #23	Smad6 (MGP_PahariEiJ_G0015202) #26	Zwilch (MGP_PahariEiJ_G0015204) #30	Rpl4 (MGP_PahariEiJ_G0015205) #31	Snapc5 (MGP_PahariEiJ_G0015206) #32	Map2k1 (MGP_PahariEiJ_G0015207) #33	Tipin (MGP_PahariEiJ_G0015208) #34	Dis3l (MGP_PahariEiJ_G0015209) #35	Megf11 (MGP_PahariEiJ_G0015210) #36	Rab11a (MGP_PahariEiJ_G0015211) #37	Dennd4a (MGP_PahariEiJ_G0015212)	Slc24a1 (MGP_PahariEiJ_G0015213)	Ints14 (MGP_PahariEiJ_G0015214)	Hacd3 (MGP_PahariEiJ_G0015215)	Dpp8 (MGP_PahariEiJ_G0015216)
Rat	MODERN SPECIES	18	Paqr5 (ENSRNOG00000014164)	Glce (ENSRNOG00000025372)	Spesp1 (ENSRNOG00000025359) #8	Anp32a (ENSRNOG00000014846) #10	Coro2b (ENSRNOG00000015257) #11	Itga11 (ENSRNOG00000006723) #12	Fem1b (ENSRNOG00000007077) #13	Cln6 (ENSRNOG00000007164) #14	Calml4 (ENSRNOG00000038202) #15	Pias1 (ENSRNOG00000034272) #16	Skor1 (ENSRNOG00000013959) #17	Map2k5 (ENSRNOG00000007926) #19	AC132740.1 (ENSRNOG00000054780)	C8h15orf61 (ENSRNOG00000008340) #20	Iqch (ENSRNOG00000008353) #21	Aagab (ENSRNOG00000008424) #22	Smad3 (ENSRNOG00000008620) #23	Smad6 (ENSRNOG00000009173) #26	Lctl (ENSRNOG00000009193) #29	Zwilch (ENSRNOG00000009303) #30	Rpl4 (ENSRNOG00000009378) #31	Map2k1 (ENSRNOG00000010176) #33	Tipin (ENSRNOG00000043068) #34	Dis3l (ENSRNOG00000010537) #35	Megf11 (ENSRNOG00000010634) #36	Rab11a (ENSRNOG00000011302) #37	LOC120094392 (ENSRNOG00000071140)	Dennd4a (ENSRNOG00000011739)	Slc24a1 (ENSRNOG00000052051)	Ints14 (ENSRNOG00000012469)	Hacd3 (ENSRNOG00000030232)
Upper Galilee mountains blind mole rat	MODERN SPECIES	955	Paqr5 (ENSNGAG00000002130)	Glce (ENSNGAG00000014759)	Spesp1 (ENSNGAG00000012498) #8	ENSNGAG00000005322 #10	ENSNGAG00000017524 #10	Coro2b (ENSNGAG00000024331) #11	Itga11 (ENSNGAG00000024101) #12	ENSNGAG00000021620 #13	Cln6 (ENSNGAG00000023832) #14	Calml4 (ENSNGAG00000016088) #15	Pias1 (ENSNGAG00000022735) #16	Skor1 (ENSNGAG00000020060) #17	Map2k5 (ENSNGAG00000011076) #19	2300009A05Rik (ENSNGAG00000004715) #20	Iqch (ENSNGAG00000019505) #21	ENSNGAG00000010708 #22	Smad3 (ENSNGAG00000023535) #23	ENSNGAG00000022756	Smad6 (ENSNGAG00000021223) #26	Lctl (ENSNGAG00000012911) #29	Zwilch (ENSNGAG00000016626) #30	ENSNGAG00000006653 #31	Snapc5 (ENSNGAG00000006133) #32	Map2k1 (ENSNGAG00000006894) #33	Tipin (ENSNGAG00000018237) #34	Dis3l (ENSNGAG00000017008) #35	Megf11 (ENSNGAG00000011352) #36	Rab11a (ENSNGAG00000013726) #37	ENSNGAG00000022619	Slc24a1 (ENSNGAG00000010674)	Ints14 (ENSNGAG00000007105)
Lesser Egyptian jerboa	MODERN SPECIES	92					Anp32a (ENSJJAG00000019278) #10	Coro2b (ENSJJAG00000003058) #11	Itga11 (ENSJJAG00000007244) #12	Fem1b (ENSJJAG00000018686) #13	Cln6 (ENSJJAG00000024405) #14	Calml4 (ENSJJAG00000014113) #15	ENSJJAG00000019728 #16	Skor1 (ENSJJAG00000003624) #17	Map2k5 (ENSJJAG00000024208) #19	2300009A05Rik (ENSJJAG00000019436) #20	Iqch (ENSJJAG00000024416) #21	ENSJJAG00000018312 #22	Smad3 (ENSJJAG00000021414) #23	Smad6 (ENSJJAG00000019623) #26	Lctl (ENSJJAG00000013579) #29	Zwilch (ENSJJAG00000010189) #30	ENSJJAG00000013677 #31	Snapc5 (ENSJJAG00000022013) #32	Map2k1 (ENSJJAG00000021452) #33	Tipin (ENSJJAG00000017947) #34	Dis3l (ENSJJAG00000016147) #35	ENSJJAG00000019234	Megf11 (ENSJJAG00000023890) #36	ENSJJAG00000015445 #37	ENSJJAG00000012113	Slc24a1 (ENSJJAG00000009344)	Ints14 (ENSJJAG00000005359)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Hystricomorpha	ANCESTRAL SPECIES	36	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.vb #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Hystricomorpha_a	ANCESTRAL SPECIES	38	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.vb #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Hystricomorpha_b	ANCESTRAL SPECIES	35	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.vb #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Degu	DUPLICATION
Degu	MODERN SPECIES	67	GLCE (ENSODEG00000015883)	ENSODEG00000016071 #10	CORO2B (ENSODEG00000016099) #11	ITGA11 (ENSODEG00000015700) #12	ENSODEG00000020366	ENSODEG00000016475 #13	CLN6 (ENSODEG00000015888) #14	CALML4 (ENSODEG00000015441) #15	PIAS1 (ENSODEG00000016418) #16	SKOR1 (ENSODEG00000015903) #17	MAP2K5 (ENSODEG00000015607) #19	ENSODEG00000016511	C15orf61 (ENSODEG00000016721) #20	IQCH (ENSODEG00000016134) #21	ENSODEG00000020336	ENSODEG00000015886 #22	SMAD3 (ENSODEG00000015739) #23	SMAD6 (ENSODEG00000016272) #26	ENSODEG00000020317	LCTL (ENSODEG00000016271) #29	ZWILCH (ENSODEG00000016374) #30	ENSODEG00000016495 #31	MAP2K1 (ENSODEG00000016739) #33	DIS3L (ENSODEG00000015811) #35	MEGF11 (ENSODEG00000015967) #36	ENSODEG00000016878 #37	ENSODEG00000016435	ENSODEG00000016544	SLC24A1 (ENSODEG00000016047)	INTS14 (ENSODEG00000017006)	HACD3 (ENSODEG00000016975)
Degu	MODERN SPECIES	122														ENSODEG00000006114	ZPLD1 (ENSODEG00000007525)	ENSODEG00000007067 #22	ENSODEG00000005667	NFKBIZ (ENSODEG00000005703)	ENSODEG00000005326	ENSODEG00000007096	NXPE3 (ENSODEG00000006809)	ENSODEG00000006503	ENSODEG00000005842	ZBTB11 (ENSODEG00000006262)	ENSODEG00000019290	ENSODEG00000005207	SENP7 (ENSODEG00000006738)	ENSODEG00000005550	IMPG2 (ENSODEG00000006079)	ABI3BP (ENSODEG00000005855)	ENSODEG00000005535
Long-tailed chinchilla	MODERN SPECIES	157	KIF23 (ENSCLAG00000009415)	PAQR5 (ENSCLAG00000008730)	GLCE (ENSCLAG00000009057)	SPESP1 (ENSCLAG00000009992) #8	ENSCLAG00000010256 #10	CORO2B (ENSCLAG00000006658) #11	ITGA11 (ENSCLAG00000006568) #12	FEM1B (ENSCLAG00000004834) #13	CLN6 (ENSCLAG00000007035) #14	CALML4 (ENSCLAG00000008707) #15	PIAS1 (ENSCLAG00000008129) #16	SKOR1 (ENSCLAG00000007488) #17	MAP2K5 (ENSCLAG00000005277) #19	C15orf61 (ENSCLAG00000008894) #20	IQCH (ENSCLAG00000011031) #21	AAGAB (ENSCLAG00000008364) #22	SMAD3 (ENSCLAG00000005027) #23	ENSCLAG00000005550 #26	LCTL (ENSCLAG00000004564) #29	ZWILCH (ENSCLAG00000010124) #30	RPL4 (ENSCLAG00000010827) #31	SNAPC5 (ENSCLAG00000011660) #32	MAP2K1 (ENSCLAG00000013042) #33	TIPIN (ENSCLAG00000004924) #34	DIS3L (ENSCLAG00000005741) #35	MEGF11 (ENSCLAG00000013146) #36	RAB11A (ENSCLAG00000007435) #37	DENND4A (ENSCLAG00000007003)	SLC24A1 (ENSCLAG00000013073)	INTS14 (ENSCLAG00000009395)	HACD3 (ENSCLAG00000010725)
Guinea pig	MODERN SPECIES						GLCE (ENSCPOG00000020608)	ENSCPOG00000008829 #10	CORO2B (ENSCPOG00000023117) #11	ITGA11 (ENSCPOG00000012877) #12	FEM1B (ENSCPOG00000031057) #13	CLN6 (ENSCPOG00000007282) #14	CALML4 (ENSCPOG00000033517) #15	PIAS1 (ENSCPOG00000007278) #16	SKOR1 (ENSCPOG00000012665) #17	MAP2K5 (ENSCPOG00000000970) #19	C15orf61 (ENSCPOG00000022542) #20	AAGAB (ENSCPOG00000000965) #22	SMAD3 (ENSCPOG00000021314) #23	SMAD6 (ENSCPOG00000001535) #26	DST (ENSCPOG00000005092)	BEND6 (ENSCPOG00000015453)	ZNF451 (ENSCPOG00000002491)	BAG2 (ENSCPOG00000040302)	RAB23 (ENSCPOG00000030218)	ENSCPOG00000035048	PRIM2 (ENSCPOG00000003912)	KHDRBS2 (ENSCPOG00000025621)	LGSN (ENSCPOG00000008736)	PTP4A1 (ENSCPOG00000032105)	ENSCPOG00000007146	ENSCPOG00000030019	DAPK2 (ENSCPOG00000000890)
Naked mole-rat female	MODERN SPECIES	19	KIF23 (ENSHGLG00000009784)	PAQR5 (ENSHGLG00000009727)	GLCE (ENSHGLG00000033764)	SPESP1 (ENSHGLG00000046924) #8	ENSHGLG00000013229 #10	CORO2B (ENSHGLG00000015273) #11	ITGA11 (ENSHGLG00000007233) #12	FEM1B (ENSHGLG00000017948) #13	CLN6 (ENSHGLG00000017958) #14	Calml4 (ENSHGLG00000018794) #15	Pias1 (ENSHGLG00000019002) #16	SKOR1 (ENSHGLG00000017297) #17	MAP2K5 (ENSHGLG00000006627) #19	C15orf61 (ENSHGLG00000038870) #20	ENSHGLG00000026352 #21	AAGAB (ENSHGLG00000038898) #22	SMAD3 (ENSHGLG00000048787) #23	SMAD6 (ENSHGLG00000008453) #26	LCTL (ENSHGLG00000015669) #29	ZWILCH (ENSHGLG00000016059) #30	ENSHGLG00000008054 #31	ENSHGLG00000040904 #32	ENSHGLG00000010036 #33	ENSHGLG00000048822	ENSHGLG00000005971 #34	ENSHGLG00000007770 #35	MEGF11 (ENSHGLG00000011012) #36	RAB11A (ENSHGLG00000048551) #37	ENSHGLG00000044288	DENND4A (ENSHGLG00000009810)	SLC24A1 (ENSHGLG00000008872)
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Marmotini	ANCESTRAL SPECIES	9	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Squirrel	MODERN SPECIES	71	RPLP1 (ENSSTOG00000027893)	KIF23 (ENSSTOG00000022809)	PAQR5 (ENSSTOG00000000507)	GLCE (ENSSTOG00000019509)	ENSSTOG00000015929 #10	CORO2B (ENSSTOG00000015918) #11	ITGA11 (ENSSTOG00000015545) #12	FEM1B (ENSSTOG00000015544) #13	CLN6 (ENSSTOG00000015540) #14	CALML4 (ENSSTOG00000015539) #15	PIAS1 (ENSSTOG00000015532) #16	SKOR1 (ENSSTOG00000002675) #17	MAP2K5 (ENSSTOG00000010318) #19	C15orf61 (ENSSTOG00000010312) #20	IQCH (ENSSTOG00000010299) #21	AAGAB (ENSSTOG00000010291) #22	SMAD3 (ENSSTOG00000010286) #23	SMAD6 (ENSSTOG00000000696) #26	LCTL (ENSSTOG00000028073) #29	ZWILCH (ENSSTOG00000009607) #30	RPL4 (ENSSTOG00000009221) #31	SNAPC5 (ENSSTOG00000009201) #32	MAP2K1 (ENSSTOG00000009190) #33	TIPIN (ENSSTOG00000009182) #34	DIS3L (ENSSTOG00000009158) #35	MEGF11 (ENSSTOG00000015258) #36	RAB11A (ENSSTOG00000015255) #37	DENND4A (ENSSTOG00000026966)	SLC24A1 (ENSSTOG00000002228)	INTS14 (ENSSTOG00000002217)	HACD3 (ENSSTOG00000002211)
Arctic ground squirrel	MODERN SPECIES	397						ITGA11 (ENSUPAG00010017705) #12	FEM1B (ENSUPAG00010017736) #13	CLN6 (ENSUPAG00010017740) #14	CALML4 (ENSUPAG00010017747) #15	PIAS1 (ENSUPAG00010017772) #16	ENSUPAG00010017781	SKOR1 (ENSUPAG00010017792) #17	MAP2K5 (ENSUPAG00010017819) #19	C15orf61 (ENSUPAG00010017904) #20	IQCH (ENSUPAG00010017914) #21	AAGAB (ENSUPAG00010018001) #22	SMAD3 (ENSUPAG00010018010) #23	ENSUPAG00010018048	SMAD6 (ENSUPAG00010018050) #26	LCTL (ENSUPAG00010018063) #29	ZWILCH (ENSUPAG00010018079) #30	RPL4 (ENSUPAG00010018119) #31	SNAPC5 (ENSUPAG00010018142) #32	MAP2K1 (ENSUPAG00010018149) #33
Alpin marmot	MODERN SPECIES	7	PAQR5 (ENSMMMG00000005396)	GLCE (ENSMMMG00000005432)	NOX5 (ENSMMMG00000005478) #7	SPESP1 (ENSMMMG00000005545) #8	ENSMMMG00000005555 #10	CORO2B (ENSMMMG00000005600) #11	ITGA11 (ENSMMMG00000005622) #12	ENSMMMG00000005671 #13	CLN6 (ENSMMMG00000005687) #14	CALML4 (ENSMMMG00000005699) #15	PIAS1 (ENSMMMG00000005733) #16	SKOR1 (ENSMMMG00000005773) #17	MAP2K5 (ENSMMMG00000005809) #19	ENSMMMG00000005844	IQCH (ENSMMMG00000005869) #21	AAGAB (ENSMMMG00000005970) #22	SMAD3 (ENSMMMG00000005977) #23	ENSMMMG00000006027	SMAD6 (ENSMMMG00000006032) #26	LCTL (ENSMMMG00000006061) #29	ZWILCH (ENSMMMG00000006077) #30	ENSMMMG00000006104	RPL4 (ENSMMMG00000006109) #31	SNAPC5 (ENSMMMG00000006163) #32	MAP2K1 (ENSMMMG00000006173) #33	TIPIN (ENSMMMG00000006196) #34	DIS3L (ENSMMMG00000006220) #35	MEGF11 (ENSMMMG00000006311) #36	RAB11A (ENSMMMG00000006747) #37	ENSMMMG00000006762	DENND4A (ENSMMMG00000006769)
Eurasian red squirrel	MODERN SPECIES	11	GLCE (ENSSVLG00005007694)	NOX5 (ENSSVLG00005007597) #7	SPESP1 (ENSSVLG00005007565) #8	ENSSVLG00005007513	ENSSVLG00005007452 #10	CORO2B (ENSSVLG00005007364) #11	ITGA11 (ENSSVLG00005007326) #12	FEM1B (ENSSVLG00005007302) #13	CLN6 (ENSSVLG00005007215) #14	CALML4 (ENSSVLG00005007109) #15	PIAS1 (ENSSVLG00005007019) #16	SKOR1 (ENSSVLG00005006917) #17	MAP2K5 (ENSSVLG00005006656) #19	C15orf61 (ENSSVLG00005006592) #20	IQCH (ENSSVLG00005025085) #21	AAGAB (ENSSVLG00005025018) #22	SMAD3 (ENSSVLG00005024991) #23	ENSSVLG00005024968	SMAD6 (ENSSVLG00005024946) #26	LCTL (ENSSVLG00005024912) #29	ZWILCH (ENSSVLG00005024833) #30	ENSSVLG00005024744 #31	SNAPC5 (ENSSVLG00005024729) #32	MAP2K1 (ENSSVLG00005024707) #33	TIPIN (ENSSVLG00005024668) #34	DIS3L (ENSSVLG00005024622) #35	MEGF11 (ENSSVLG00005024351) #36	RAB11A (ENSSVLG00005024246) #37	DENND4A (ENSSVLG00005024160)	SLC24A1 (ENSSVLG00005023979)	INTS14 (ENSSVLG00005023820)
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000007218 #22
Common shrew	MODERN SPECIES	355																ENSSARG00000002117 #22
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Suina	ANCESTRAL SPECIES	12	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Chacoan peccary	MODERN SPECIES	786	KIF23 (ENSCWAG00000012586)	PAQR5 (ENSCWAG00000012711)	GLCE (ENSCWAG00000012796)	SPESP1 (ENSCWAG00000012853) #8	ENSCWAG00000012876 #10	CORO2B (ENSCWAG00000012937) #11	ITGA11 (ENSCWAG00000013057) #12	FEM1B (ENSCWAG00000013140) #13	CLN6 (ENSCWAG00000013181) #14	CALML4 (ENSCWAG00000013422) #15	PIAS1 (ENSCWAG00000013465) #16	SKOR1 (ENSCWAG00000013676) #17	MAP2K5 (ENSCWAG00000013886) #19	C15orf61 (ENSCWAG00000014382) #20	IQCH (ENSCWAG00000014432) #21	AAGAB (ENSCWAG00000014993) #22	SMAD3 (ENSCWAG00000015026) #23	SMAD6 (ENSCWAG00000015079) #26	LCTL (ENSCWAG00000015109) #29	ZWILCH (ENSCWAG00000015266) #30	RPL4 (ENSCWAG00000015376) #31	SNAPC5 (ENSCWAG00000015485) #32	MAP2K1 (ENSCWAG00000015519) #33	TIPIN (ENSCWAG00000015560) #34	DIS3L (ENSCWAG00000015597) #35	MEGF11 (ENSCWAG00000015726) #36	RAB11A (ENSCWAG00000016259) #37	DENND4A (ENSCWAG00000016363)	SLC24A1 (ENSCWAG00000017106)	INTS14 (ENSCWAG00000017595)	HACD3 (ENSCWAG00000017975)
Pig	MODERN SPECIES		GLCE (ENSSSCG00000026078)	NOX5 (ENSSSCG00000004966) #7	SPESP1 (ENSSSCG00000032244) #8	ENSSSCG00000004963 #10	CORO2B (ENSSSCG00000004962) #11	ITGA11 (ENSSSCG00000004961) #12	FEM1B (ENSSSCG00000022419) #13	CLN6 (ENSSSCG00000004957) #14	CALML4 (ENSSSCG00000026517) #15	PIAS1 (ENSSSCG00000004958) #16	SKOR1 (ENSSSCG00000004956) #17	MAP2K5 (ENSSSCG00000004955) #19	C15orf61 (ENSSSCG00000004954) #20	ENSSSCG00000034963 #21	ENSSSCG00000057448 #21	AAGAB (ENSSSCG00000004951) #22	SMAD3 (ENSSSCG00000004952) #23	SMAD6 (ENSSSCG00000004948) #26	LCTL (ENSSSCG00000004947) #29	ENSSSCG00000051767	ZWILCH (ENSSSCG00000004946) #30	RPL4 (ENSSSCG00000004945) #31	SNAPC5 (ENSSSCG00000038941) #32	MAP2K1 (ENSSSCG00000004943) #33	TIPIN (ENSSSCG00000004942) #34	DIS3L (ENSSSCG00000004941) #35	MEGF11 (ENSSSCG00000004939) #36	RAB11A (ENSSSCG00000032312) #37	DENND4A (ENSSSCG00000004938)	SLC24A1 (ENSSSCG00000004937)	INTS14 (ENSSSCG00000004936)
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Camelidae	ANCESTRAL SPECIES	83										ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Arabian camel	MODERN SPECIES	32	TPM1 (ENSCDRG00005006508)	ENSCDRG00005006370	ENSCDRG00005004006	CA12 (ENSCDRG00005003913)	APH1B (ENSCDRG00005003835)	RAB8B (ENSCDRG00005003808)	ENSCDRG00005003749	ENSCDRG00005003720	CLN6 (ENSCDRG00005003662) #14	CALML4 (ENSCDRG00005003629) #15	ENSCDRG00005003580	PIAS1 (ENSCDRG00005003494) #16	MAP2K5 (ENSCDRG00005003152) #19	C15orf61 (ENSCDRG00005003109) #20	IQCH (ENSCDRG00005002929) #21	AAGAB (ENSCDRG00005002843) #22	SMAD3 (ENSCDRG00005002780) #23	ENSCDRG00005002755 #26	ENSCDRG00005002745 #28	LCTL (ENSCDRG00005002712) #29	ZWILCH (ENSCDRG00005002673) #30	ENSCDRG00005002627 #31	SNAPC5 (ENSCDRG00005002604) #32	MAP2K1 (ENSCDRG00005002580) #33	TIPIN (ENSCDRG00005002562) #34	DIS3L (ENSCDRG00005002526) #35	MEGF11 (ENSCDRG00005002479) #36	RAB11A (ENSCDRG00005002443) #37	DENND4A (ENSCDRG00005002286)	SLC24A1 (ENSCDRG00005002129)	INTS14 (ENSCDRG00005001994)
Alpaca	MODERN SPECIES	3324													MAP2K5 (ENSVPAG00000008890) #19	C15orf61 (ENSVPAG00000008887) #20	IQCH (ENSVPAG00000008883) #21	AAGAB (ENSVPAG00000008879) #22
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.xc #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.xc.b #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000012563.i.a	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00390000000134.b.p.b	ENSGT00940000158146 #26	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.xc.b #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000012563.i.a	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00390000000134.b.p.b	ENSGT00940000158146 #26	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.xc.b #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000012563.i.a	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT01010000222830.d.a	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00390000000134.b.p.b	ENSGT00940000158146 #26	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.xc.b #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000012563.i.a	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B
Monodontidae	ANCESTRAL SPECIES	27	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00390000005300	ENSGT00940000164579.e.b	ENSGT00390000008748.b	ENSGT00860000136093.c	ENSGT00940000157725	ENSGT00940000158086	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00390000000134.b.p.b	ENSGT00940000158146 #26	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.xc.b #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000012563.i.a	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B
Narwhal	MODERN SPECIES	308	GLCE (ENSMMNG00015008649)	ENSMMNG00015008639	SPESP1 (ENSMMNG00015008626) #8	ENSMMNG00015008598 #10	CORO2B (ENSMMNG00015008567) #11	ITGA11 (ENSMMNG00015008533) #12	FEM1B (ENSMMNG00015008513) #13	CLN6 (ENSMMNG00015008469) #14	CALML4 (ENSMMNG00015008408) #15	PIAS1 (ENSMMNG00015008373) #16	ENSMMNG00015008358	SKOR1 (ENSMMNG00015008331) #17	MAP2K5 (ENSMMNG00015008216) #19	C15orf61 (ENSMMNG00015008139) #20	IQCH (ENSMMNG00015008052) #21	AAGAB (ENSMMNG00015007942) #22	SMAD3 (ENSMMNG00015007909) #23	ENSMMNG00015007889	SMAD6 (ENSMMNG00015007869) #26	ENSMMNG00015007816 #28	LCTL (ENSMMNG00015007784) #29	ZWILCH (ENSMMNG00015007746) #30	ENSMMNG00015007652 #31	SNAPC5 (ENSMMNG00015007601) #32	MAP2K1 (ENSMMNG00015007579) #33	ENSMMNG00015007536	TIPIN (ENSMMNG00015007474) #34	DIS3L (ENSMMNG00015007393) #35	MEGF11 (ENSMMNG00015007280) #36	RAB11A (ENSMMNG00015007170) #37	DENND4A (ENSMMNG00015007114)
Beluga whale	MODERN SPECIES	20	GLCE (ENSDLEG00000000492)	SPESP1 (ENSDLEG00000000475) #8	ANP32A (ENSDLEG00000000431) #10	CORO2B (ENSDLEG00000000393) #11	ITGA11 (ENSDLEG00000000304) #12	FEM1B (ENSDLEG00000011544) #13	CLN6 (ENSDLEG00000011495) #14	CALML4 (ENSDLEG00000011480) #15	PIAS1 (ENSDLEG00000011410) #16	ENSDLEG00000011393	ENSDLEG00000011378	SKOR1 (ENSDLEG00000011320) #17	MAP2K5 (ENSDLEG00000011046) #19	CUNH15orf61 (ENSDLEG00000010984) #20	IQCH (ENSDLEG00000010864) #21	AAGAB (ENSDLEG00000010803) #22	SMAD3 (ENSDLEG00000010707) #23	ENSDLEG00000010689	SMAD6 (ENSDLEG00000010676) #26	ENSDLEG00000010657	ENSDLEG00000010647 #28	LCTL (ENSDLEG00000010607) #29	ZWILCH (ENSDLEG00000010482) #30	RPL4 (ENSDLEG00000010430) #31	SNAPC5 (ENSDLEG00000010421) #32	MAP2K1 (ENSDLEG00000010364) #33	ENSDLEG00000010343	TIPIN (ENSDLEG00000010313) #34	DIS3L (ENSDLEG00000009982) #35	MEGF11 (ENSDLEG00000009720) #36	RAB11A (ENSDLEG00000009643) #37
Vaquita	MODERN SPECIES	11	GLCE (ENSPSNG00000001258)	ENSPSNG00000001278	SPESP1 (ENSPSNG00000001290) #8	ENSPSNG00000001312 #10	CORO2B (ENSPSNG00000001338) #11	ITGA11 (ENSPSNG00000001465) #12	FEM1B (ENSPSNG00000001608) #13	CLN6 (ENSPSNG00000001671) #14	CALML4 (ENSPSNG00000001723) #15	PIAS1 (ENSPSNG00000001758) #16	ENSPSNG00000001804	SKOR1 (ENSPSNG00000001839) #17	MAP2K5 (ENSPSNG00000001943) #19	C15orf61 (ENSPSNG00000002043) #20	IQCH (ENSPSNG00000002126) #21	AAGAB (ENSPSNG00000002239) #22	SMAD3 (ENSPSNG00000002263) #23	ENSPSNG00000002286	SMAD6 (ENSPSNG00000002293) #26	ENSPSNG00000002306	LCTL (ENSPSNG00000002318) #29	ZWILCH (ENSPSNG00000002336) #30	ENSPSNG00000002352 #31	SNAPC5 (ENSPSNG00000002388) #32	MAP2K1 (ENSPSNG00000002407) #33	TIPIN (ENSPSNG00000002436) #34	ENSPSNG00000002464 #35	MEGF11 (ENSPSNG00000002539) #36	RAB11A (ENSPSNG00000002694) #37	ENSPSNG00000002715	DENND4A (ENSPSNG00000002770)
Dolphin	MODERN SPECIES	1671												SKOR1 (ENSTTRG00000003036) #17	MAP2K5 (ENSTTRG00000003035) #19	C15orf61 (ENSTTRG00000003034) #20	IQCH (ENSTTRG00000003033) #21	AAGAB (ENSTTRG00000003032) #22	SMAD3 (ENSTTRG00000003030) #23
Sperm whale	MODERN SPECIES	2	KIF23 (ENSPCTG00005020503)	PAQR5 (ENSPCTG00005020467)	GLCE (ENSPCTG00005020426)	SPESP1 (ENSPCTG00005020391) #8	ITGA11 (ENSPCTG00005020249) #12	FEM1B (ENSPCTG00005020203) #13	CLN6 (ENSPCTG00005020048) #14	CALML4 (ENSPCTG00005019999) #15	PIAS1 (ENSPCTG00005019931) #16	ENSPCTG00005019890	ENSPCTG00005019847	SKOR1 (ENSPCTG00005019628) #17	MAP2K5 (ENSPCTG00005018992) #19	C11H15orf61 (ENSPCTG00005018901) #20	IQCH (ENSPCTG00005018285) #21	AAGAB (ENSPCTG00005018169) #22	SMAD3 (ENSPCTG00005018084) #23	ENSPCTG00005018068	SMAD6 (ENSPCTG00005018032) #26	ENSPCTG00005018004 #28	LCTL (ENSPCTG00005017782) #29	ZWILCH (ENSPCTG00005017727) #30	ENSPCTG00005017611 #31	SNAPC5 (ENSPCTG00005017569) #32	MAP2K1 (ENSPCTG00005017538) #33	TIPIN (ENSPCTG00005017493) #34	DIS3L (ENSPCTG00005017408) #35	MEGF11 (ENSPCTG00005016590) #36	RAB11A (ENSPCTG00005016434) #37	DENND4A (ENSPCTG00005016168)	SLC24A1 (ENSPCTG00005015689)
Blue whale	MODERN SPECIES	11	GLCE (ENSBMSG00010003338)	ENSBMSG00010003347	SPESP1 (ENSBMSG00010003359) #8	ENSBMSG00010003371 #10	CORO2B (ENSBMSG00010003388) #11	ENSBMSG00010003412	ITGA11 (ENSBMSG00010003422) #12	FEM1B (ENSBMSG00010003441) #13	CLN6 (ENSBMSG00010003453) #14	CALML4 (ENSBMSG00010003507) #15	PIAS1 (ENSBMSG00010003520) #16	SKOR1 (ENSBMSG00010003555) #17	MAP2K5 (ENSBMSG00010003598) #19	C15orf61 (ENSBMSG00010003681) #20	IQCH (ENSBMSG00010003720) #21	AAGAB (ENSBMSG00010003912) #22	SMAD3 (ENSBMSG00010003929) #23	SMAD6 (ENSBMSG00010003960) #26	LCTL (ENSBMSG00010003979) #29	ZWILCH (ENSBMSG00010004025) #30	ENSBMSG00010004041 #31	ENSBMSG00010004081 #32	MAP2K1 (ENSBMSG00010004109) #33	ENSBMSG00010004137	ENSBMSG00010004151 #34	DIS3L (ENSBMSG00010004171) #35	MEGF11 (ENSBMSG00010004218) #36	RAB11A (ENSBMSG00010004363) #37	DENND4A (ENSBMSG00010004402)	SLC24A1 (ENSBMSG00010004497)	INTS14 (ENSBMSG00010004651)
Pecora	ANCESTRAL SPECIES	6	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.xc #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Yarkand deer	MODERN SPECIES	3	ENSCHYG00000018101	ENSCHYG00000017784	NOX5 (ENSCHYG00000017570) #7	SPESP1 (ENSCHYG00000017531) #8	ENSCHYG00000017234 #10	CORO2B (ENSCHYG00000016934) #11	ITGA11 (ENSCHYG00000014651) #12	FEM1B (ENSCHYG00000014524) #13	CLN6 (ENSCHYG00000014290) #14	CALML4 (ENSCHYG00000014198) #15	PIAS1 (ENSCHYG00000013992) #16	SKOR1 (ENSCHYG00000013681) #17	MAP2K5 (ENSCHYG00000012261) #19	C15orf61 (ENSCHYG00000012160) #20	IQCH (ENSCHYG00000011825) #21	AAGAB (ENSCHYG00000011610) #22	SMAD3 (ENSCHYG00000011473) #23	SMAD6 (ENSCHYG00000011380) #26	ENSCHYG00000011323 #28	LCTL (ENSCHYG00000011283) #29	ZWILCH (ENSCHYG00000010774) #30	ENSCHYG00000010506 #31	SNAPC5 (ENSCHYG00000010450) #32	ENSCHYG00000010432	MAP2K1 (ENSCHYG00000010364) #33	TIPIN (ENSCHYG00000010297) #34	DIS3L (ENSCHYG00000010099) #35	MEGF11 (ENSCHYG00000009296) #36	ENSCHYG00000009145 #37	ENSCHYG00000009117	DENND4A (ENSCHYG00000008838)
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.xc #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Siberian musk deer	MODERN SPECIES	70	GLCE (ENSMMSG00000002545)	NOX5 (ENSMMSG00000002533) #7	ENSMMSG00000002508	ENSMMSG00000002461 #10	ENSMMSG00000002437	CORO2B (ENSMMSG00000002385) #11	ITGA11 (ENSMMSG00000002350) #12	FEM1B (ENSMMSG00000002327) #13	CLN6 (ENSMMSG00000002230) #14	CALML4 (ENSMMSG00000002206) #15	PIAS1 (ENSMMSG00000002174) #16	SKOR1 (ENSMMSG00000002112) #17	MAP2K5 (ENSMMSG00000001850) #19	C15orf61 (ENSMMSG00000001796) #20	IQCH (ENSMMSG00000001575) #21	AAGAB (ENSMMSG00000001517) #22	SMAD3 (ENSMMSG00000001493) #23	SMAD6 (ENSMMSG00000001473) #26	LCTL (ENSMMSG00000001442) #29	ZWILCH (ENSMMSG00000001358) #30	ENSMMSG00000001277 #31	SNAPC5 (ENSMMSG00000001249) #32	MAP2K1 (ENSMMSG00000001210) #33	TIPIN (ENSMMSG00000001178) #34	DIS3L (ENSMMSG00000001148) #35	MEGF11 (ENSMMSG00000001023) #36	ENSMMSG00000000971 #37	DENND4A (ENSMMSG00000000845)	ENSMMSG00000000783	SLC24A1 (ENSMMSG00000000735)	INTS14 (ENSMMSG00000000581)
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.xc #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Caprinae	ANCESTRAL SPECIES	30	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.xc #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764.o #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Goat	DUPLICATION
Goat	MODERN SPECIES	1	NOX5 (ENSCHIG00000023480) #7	SPESP1 (ENSCHIG00000013213) #8	ENSCHIG00000011806 #10	CORO2B (ENSCHIG00000023253) #11	ITGA11 (ENSCHIG00000025296) #12	FEM1B (ENSCHIG00000023393) #13	CLN6 (ENSCHIG00000024128) #14	CALML4 (ENSCHIG00000005207) #15	PIAS1 (ENSCHIG00000014001) #16	ENSCHIG00000003884 #25	ENSCHIG00000010951	SKOR1 (ENSCHIG00000017580) #17	MAP2K5 (ENSCHIG00000022039) #19	C15orf61 (ENSCHIG00000026630) #20	IQCH (ENSCHIG00000009034) #21	ENSCHIG00000015028 #22	SMAD3 (ENSCHIG00000013774) #23	SMAD6 (ENSCHIG00000012651) #26	LCTL (ENSCHIG00000017181) #29	ZWILCH (ENSCHIG00000015830) #30	RPL4 (ENSCHIG00000012421) #31	SNAPC5 (ENSCHIG00000011315) #32	MAP2K1 (ENSCHIG00000021340) #33	ENSCHIG00000000481 #34	DIS3L (ENSCHIG00000009744) #35	MEGF11 (ENSCHIG00000023140) #36	ENSCHIG00000006809	ENSCHIG00000012183 #37	DENND4A (ENSCHIG00000024015)	ENSCHIG00000015128	SLC24A1 (ENSCHIG00000023644)
Goat	MODERN SPECIES	9	SHKBP1 (ENSCHIG00000026431)	SPTBN4 (ENSCHIG00000015236)	BLVRB (ENSCHIG00000021831)	SERTAD3 (ENSCHIG00000005317)	SERTAD1 (ENSCHIG00000012650)	PRX (ENSCHIG00000026808)	HIPK4 (ENSCHIG00000017836)	PLD3 (ENSCHIG00000024228)	C19orf47 (ENSCHIG00000027186)	AKT2 (ENSCHIG00000015049)	TTC9B (ENSCHIG00000007381)	MAP3K10 (ENSCHIG00000019302)	ENSCHIG00000018631	ZNF546 (ENSCHIG00000011952)	PSMC4 (ENSCHIG00000016431)	ENSCHIG00000012448 #22	ENSCHIG00000022668	FBL (ENSCHIG00000021562)	DYRK1B (ENSCHIG00000013926)	ENSCHIG00000020003	ENSCHIG00000015792	LGALS15 (ENSCHIG00000020836)	LGALS16 (ENSCHIG00000024926)	EID2 (ENSCHIG00000007961)	ENSCHIG00000011678	ENSCHIG00000018741	DLL3 (ENSCHIG00000009219)	TIMM50 (ENSCHIG00000003131)	SUPT5H (ENSCHIG00000023821)	ENSCHIG00000005676	RPS16 (ENSCHIG00000024160)
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	23	KIF23 (ENSOARG00020013394)	GLCE (ENSOARG00020013246)	NOX5 (ENSOARG00020012967) #7	SPESP1 (ENSOARG00020012911) #8	ENSOARG00020012822 #10	CORO2B (ENSOARG00020012576) #11	ITGA11 (ENSOARG00020012015) #12	FEM1B (ENSOARG00020011984) #13	CLN6 (ENSOARG00020011715) #14	CALML4 (ENSOARG00020011634) #15	PIAS1 (ENSOARG00020011172) #16	SKOR1 (ENSOARG00020010969) #17	MAP2K5 (ENSOARG00020009665) #19	C15orf61 (ENSOARG00020009584) #20	IQCH (ENSOARG00020008820) #21	ENSOARG00020008703 #22	SMAD3 (ENSOARG00020008589) #23	SMAD6 (ENSOARG00020008552) #26	LCTL (ENSOARG00020008384) #29	ZWILCH (ENSOARG00020008203) #30	RPL4 (ENSOARG00020008040) #31	SNAPC5 (ENSOARG00020007973) #32	MAP2K1 (ENSOARG00020007890) #33	TIPIN (ENSOARG00020007825) #34	DIS3L (ENSOARG00020007756) #35	MEGF11 (ENSOARG00020006928) #36	ENSOARG00020006812 #37	DENND4A (ENSOARG00020006221)	SLC24A1 (ENSOARG00020006188)	INTS14 (ENSOARG00020006021)	HACD3 (ENSOARG00020005830)
Rambouillet Sheep	MODERN SPECIES	5	SHKBP1 (ENSOARG00020013843)	SPTBN4 (ENSOARG00020013943)	BLVRB (ENSOARG00020014151)	SERTAD3 (ENSOARG00020014364)	SERTAD1 (ENSOARG00020014390)	PRX (ENSOARG00020014413)	HIPK4 (ENSOARG00020014458)	PLD3 (ENSOARG00020014520)	C19orf47 (ENSOARG00020014593)	AKT2 (ENSOARG00020014736)	CCNP (ENSOARG00020014872)	TTC9B (ENSOARG00020015008)	MAP3K10 (ENSOARG00020015050)	ZNF546 (ENSOARG00020015127)	PSMC4 (ENSOARG00020015236)	ENSOARG00020015314 #22	ENSOARG00020015383	ENSOARG00020015769	FBL (ENSOARG00020015836)	DYRK1B (ENSOARG00020015979)	ENSOARG00020016126	ENSOARG00020016175	ENSOARG00020016268	CYP2S1 (ENSOARG00020016415)	AXL (ENSOARG00020016520)	HNRNPUL1 (ENSOARG00020016689)	CCDC97 (ENSOARG00020017796)	TGFB1 (ENSOARG00020017842)	B9D2 (ENSOARG00020017895)	TMEM91 (ENSOARG00020017943)	EXOSC5 (ENSOARG00020018062)
Bovinae	ANCESTRAL SPECIES	33	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.xc #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914.ib #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
American bison	MODERN SPECIES	2972	KIF23 (ENSBBBG00000001518)	PAQR5 (ENSBBBG00000009457)	GLCE (ENSBBBG00000009453)	NOX5 (ENSBBBG00000009452) #7	SPESP1 (ENSBBBG00000001512) #8	ENSBBBG00000009447 #10	CORO2B (ENSBBBG00000009445) #11	ITGA11 (ENSBBBG00000009443) #12	FEM1B (ENSBBBG00000009440) #13	CLN6 (ENSBBBG00000001505) #14	CALML4 (ENSBBBG00000009437) #15	PIAS1 (ENSBBBG00000009435) #16	MAP2K5 (ENSBBBG00000009430) #19	C15orf61 (ENSBBBG00000009428) #20	IQCH (ENSBBBG00000009426) #21	AAGAB (ENSBBBG00000009422) #22	SMAD3 (ENSBBBG00000009419) #23	SMAD6 (ENSBBBG00000001493) #26	LCTL (ENSBBBG00000009415) #29	ZWILCH (ENSBBBG00000007486) #30	RPL4 (ENSBBBG00000009410) #31	SNAPC5 (ENSBBBG00000009405) #32	MAP2K1 (ENSBBBG00000009402) #33	ENSBBBG00000009401	DIS3L (ENSBBBG00000001485) #35	MEGF11 (ENSBBBG00000009393) #36	ENSBBBG00000001484 #37	DENND4A (ENSBBBG00000009388)	SLC24A1 (ENSBBBG00000009385)	INTS14 (ENSBBBG00000001482)	HACD3 (ENSBBBG00000009384)
Bos	ANCESTRAL SPECIES	31	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.xc.e.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914.ib #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Bos_b	ANCESTRAL SPECIES	28	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147890 #28	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.xc.e.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914.ib #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Hybrid Bos Indicus	MODERN SPECIES	1	PAQR5 (ENSBIXG00005030752)	GLCE (ENSBIXG00005030727)	NOX5 (ENSBIXG00005030704) #7	SPESP1 (ENSBIXG00005030688) #8	ENSBIXG00005030667 #10	CORO2B (ENSBIXG00005030625) #11	ITGA11 (ENSBIXG00005030585) #12	FEM1B (ENSBIXG00005030567) #13	ENSBIXG00005030548 #14	CALML4 (ENSBIXG00005030510) #15	PIAS1 (ENSBIXG00005030503) #16	SKOR1 (ENSBIXG00005030471) #17	MAP2K5 (ENSBIXG00005030309) #19	C15orf61 (ENSBIXG00005030179) #20	IQCH (ENSBIXG00005030120) #21	AAGAB (ENSBIXG00005030085) #22	SMAD3 (ENSBIXG00005030065) #23	SMAD6 (ENSBIXG00005030012) #26	LCTL (ENSBIXG00005029961) #29	ZWILCH (ENSBIXG00005029921) #30	ENSBIXG00005029889 #31	SNAPC5 (ENSBIXG00005029881) #32	ENSBIXG00005029869 #33	TIPIN (ENSBIXG00005029852) #34	DIS3L (ENSBIXG00005029839) #35	MEGF11 (ENSBIXG00005029582) #36	RAB11A (ENSBIXG00005029469) #37	ENSBIXG00005029457	SLC24A1 (ENSBIXG00005029443)	INTS14 (ENSBIXG00005029402)	HACD3 (ENSBIXG00005029324)
Cow	MODERN SPECIES	1	KIF23 (ENSBTAG00000009983)	PAQR5 (ENSBTAG00000020352)	GLCE (ENSBTAG00000001405)	NOX5 (ENSBTAG00000009030) #7	SPESP1 (ENSBTAG00000005994) #8	ANP32A (ENSBTAG00000012365) #10	CORO2B (ENSBTAG00000012681) #11	ITGA11 (ENSBTAG00000008380) #12	FEM1B (ENSBTAG00000008378) #13	CLN6 (ENSBTAG00000005565) #14	CALML4 (ENSBTAG00000025822) #15	PIAS1 (ENSBTAG00000005564) #16	MAP2K5 (ENSBTAG00000000218) #19	C10H15orf61 (ENSBTAG00000045628) #20	IQCH (ENSBTAG00000013638) #21	AAGAB (ENSBTAG00000040368) #22	SMAD3 (ENSBTAG00000012599) #23	SMAD6 (ENSBTAG00000000625) #26	ENSBTAG00000050356 #28	LCTL (ENSBTAG00000005214) #29	ZWILCH (ENSBTAG00000005213) #30	RPL4 (ENSBTAG00000005211) #31	SNAPC5 (ENSBTAG00000005210) #32	MAP2K1 (ENSBTAG00000033983) #33	TIPIN (ENSBTAG00000000372) #34	DIS3L (ENSBTAG00000000371) #35	MEGF11 (ENSBTAG00000034140) #36	RAB11A (ENSBTAG00000018959) #37	DENND4A (ENSBTAG00000017095)	SLC24A1 (ENSBTAG00000025826)	INTS14 (ENSBTAG00000015158)
Bos_a	ANCESTRAL SPECIES	40	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145.xc.e.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36
Domestic yak	MODERN SPECIES	2	GLCE (ENSBGRG00000020997)	NOX5 (ENSBGRG00000021070) #7	ENSBGRG00000021382 #8	ENSBGRG00000021463 #10	CORO2B (ENSBGRG00000021747) #11	ITGA11 (ENSBGRG00000021881) #12	FEM1B (ENSBGRG00000022079) #13	CLN6 (ENSBGRG00000022143) #14	CALML4 (ENSBGRG00000022400) #15	PIAS1 (ENSBGRG00000022493) #16	SKOR1 (ENSBGRG00000022855) #17	MAP2K5 (ENSBGRG00000023013) #19	ENSBGRG00000023428	ENSBGRG00000023451 #20	IQCH (ENSBGRG00000023490) #21	AAGAB (ENSBGRG00000023783) #22	SMAD3 (ENSBGRG00000023965) #23	SMAD6 (ENSBGRG00000024050) #26	LCTL (ENSBGRG00000024229) #29	ZWILCH (ENSBGRG00000024356) #30	ENSBGRG00000024489 #31	SNAPC5 (ENSBGRG00000024649) #32	MAP2K1 (ENSBGRG00000024678) #33	TIPIN (ENSBGRG00000024730) #34	DIS3L (ENSBGRG00000024760) #35	MEGF11 (ENSBGRG00000024819) #36	ENSBGRG00000024884 #37	DENND4A (ENSBGRG00000024953)	ENSBGRG00000025078	SLC24A1 (ENSBGRG00000025095)	INTS14 (ENSBGRG00000025180)
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	331											MAP3K10 (ENSBMUG00000015672)	ENSBMUG00000015645	ENSBMUG00000015632	ENSBMUG00000015620	PSMC4 (ENSBMUG00000015610)	ENSBMUG00000015590 #22	ENSBMUG00000015581	FBL (ENSBMUG00000015541)	ENSBMUG00000015530	ENSBMUG00000015486	ENSBMUG00000015465	EID2 (ENSBMUG00000015450)	DLL3 (ENSBMUG00000015428)	TIMM50 (ENSBMUG00000015398)	SUPT5H (ENSBMUG00000015326)	ENSBMUG00000015253	ENSBMUG00000015236	PLEKHG2 (ENSBMUG00000015178)	ZFP36 (ENSBMUG00000015152)	MED29 (ENSBMUG00000015140)	PAF1 (ENSBMUG00000015122)
Wild yak	MODERN SPECIES	552					ENSBMUG00000006692 #10	CORO2B (ENSBMUG00000006646) #11	ITGA11 (ENSBMUG00000006621) #12	FEM1B (ENSBMUG00000006589) #13	CLN6 (ENSBMUG00000006571) #14	CALML4 (ENSBMUG00000006499) #15	PIAS1 (ENSBMUG00000006486) #16	SKOR1 (ENSBMUG00000006456) #17	MAP2K5 (ENSBMUG00000006406) #19	ENSBMUG00000006346	IQCH (ENSBMUG00000006265) #21	AAGAB (ENSBMUG00000006202) #22	SMAD3 (ENSBMUG00000006115) #23	ENSBMUG00000006090 #26	LCTL (ENSBMUG00000006040) #29	ZWILCH (ENSBMUG00000006013) #30	ENSBMUG00000005950 #31	SNAPC5 (ENSBMUG00000005936) #32	MAP2K1 (ENSBMUG00000005924) #33	TIPIN (ENSBMUG00000005904) #34	DIS3L (ENSBMUG00000005883) #35
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00960000188521	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b
Carnivora	ANCESTRAL SPECIES		ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Felidae	ANCESTRAL SPECIES	1	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Panthera	ANCESTRAL SPECIES	3	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Tiger	MODERN SPECIES	204	KIF23 (ENSPTIG00000009094)	PAQR5 (ENSPTIG00000008616)	GLCE (ENSPTIG00000008506)	NOX5 (ENSPTIG00000006417) #7	ENSPTIG00000006135 #10	CORO2B (ENSPTIG00000001549) #11	ITGA11 (ENSPTIG00000020061) #12	FEM1B (ENSPTIG00000019928) #13	CLN6 (ENSPTIG00000019082) #14	CALML4 (ENSPTIG00000018784) #15	PIAS1 (ENSPTIG00000017759) #16	ENSPTIG00000017654 #18	MAP2K5 (ENSPTIG00000016073) #19	ENSPTIG00000015816	IQCH (ENSPTIG00000014096) #21	AAGAB (ENSPTIG00000013747) #22	SMAD3 (ENSPTIG00000012606) #23	LCTL (ENSPTIG00000012036) #29	ZWILCH (ENSPTIG00000011456) #30	ENSPTIG00000010784 #31	SNAPC5 (ENSPTIG00000010493) #32	MAP2K1 (ENSPTIG00000010070) #33	ENSPTIG00000009826	DIS3L (ENSPTIG00000009042) #35	MEGF11 (ENSPTIG00000001273) #36	RAB11A (ENSPTIG00000021637) #37	DENND4A (ENSPTIG00000018874)	SLC24A1 (ENSPTIG00000017335)	INTS14 (ENSPTIG00000014987)	HACD3 (ENSPTIG00000012698)	ENSPTIG00000012013
Panthera_a	ANCESTRAL SPECIES	15	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00910000146962 #18	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00860000136046	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
leopard	MODERN SPECIES	7	PAQR5 (ENSPPRG00000022419)	GLCE (ENSPPRG00000021675)	NOX5 (ENSPPRG00000020694) #7	ENSPPRG00000015452 #10	CORO2B (ENSPPRG00000015002) #11	ITGA11 (ENSPPRG00000014106) #12	FEM1B (ENSPPRG00000011995) #13	CLN6 (ENSPPRG00000011593) #14	CALML4 (ENSPPRG00000009014) #15	PIAS1 (ENSPPRG00000008695) #16	SKOR1 (ENSPPRG00000007828) #17	MAP2K5 (ENSPPRG00000006923) #19	ENSPPRG00000005987 #18	C15orf61 (ENSPPRG00000005929) #20	IQCH (ENSPPRG00000005647) #21	AAGAB (ENSPPRG00000003564) #22	SMAD3 (ENSPPRG00000003306) #23	SMAD6 (ENSPPRG00000002502) #26	LCTL (ENSPPRG00000002315) #29	ZWILCH (ENSPPRG00000001390) #30	ENSPPRG00000000610 #31	SNAPC5 (ENSPPRG00000000465) #32	MAP2K1 (ENSPPRG00000022608) #33	TIPIN (ENSPPRG00000022554) #34	DIS3L (ENSPPRG00000019912) #35	MEGF11 (ENSPPRG00000014069) #36	RAB11A (ENSPPRG00000010471) #37	DENND4A (ENSPPRG00000009637)	SLC24A1 (ENSPPRG00000006682)	INTS14 (ENSPPRG00000003935)	HACD3 (ENSPPRG00000003107)
lion	MODERN SPECIES	6	PAQR5 (ENSPLOG00000004659)	GLCE (ENSPLOG00000004669)	NOX5 (ENSPLOG00000004683) #7	SPESP1 (ENSPLOG00000004706) #8	ENSPLOG00000004724 #10	CORO2B (ENSPLOG00000004744) #11	ITGA11 (ENSPLOG00000004793) #12	FEM1B (ENSPLOG00000004841) #13	CLN6 (ENSPLOG00000004871) #14	CALML4 (ENSPLOG00000004955) #15	PIAS1 (ENSPLOG00000004975) #16	SKOR1 (ENSPLOG00000005020) #17	MAP2K5 (ENSPLOG00000006228) #19	C15orf61 (ENSPLOG00000006817) #20	IQCH (ENSPLOG00000006897) #21	AAGAB (ENSPLOG00000007046) #22	SMAD3 (ENSPLOG00000007068) #23	ENSPLOG00000007093	SMAD6 (ENSPLOG00000007495) #26	LCTL (ENSPLOG00000007528) #29	ZWILCH (ENSPLOG00000007600) #30	RPL4 (ENSPLOG00000007707) #31	SNAPC5 (ENSPLOG00000007792) #32	MAP2K1 (ENSPLOG00000007836) #33	TIPIN (ENSPLOG00000007894) #34	DIS3L (ENSPLOG00000007929) #35	MEGF11 (ENSPLOG00000008100) #36	RAB11A (ENSPLOG00000008488) #37	DENND4A (ENSPLOG00000008717)	SLC24A1 (ENSPLOG00000009464)	INTS14 (ENSPLOG00000009755)
Cat	MODERN SPECIES	237	GLCE (ENSFCAG00000010280)	NOX5 (ENSFCAG00000001372) #7	SPESP1 (ENSFCAG00000048668) #8	ENSFCAG00000034954 #10	CORO2B (ENSFCAG00000006500) #11	ITGA11 (ENSFCAG00000006499) #12	FEM1B (ENSFCAG00000045964) #13	ENSFCAG00000049632	CLN6 (ENSFCAG00000025647) #14	CALML4 (ENSFCAG00000006497) #15	PIAS1 (ENSFCAG00000018490) #16	SKOR1 (ENSFCAG00000043709) #17	MAP2K5 (ENSFCAG00000004420) #19	CB3H15orf61 (ENSFCAG00000040546) #20	IQCH (ENSFCAG00000004419) #21	AAGAB (ENSFCAG00000004418) #22	SMAD3 (ENSFCAG00000027081) #23	SMAD6 (ENSFCAG00000012300) #26	LCTL (ENSFCAG00000012298) #29	ZWILCH (ENSFCAG00000012294) #30	RPL4 (ENSFCAG00000012293) #31	SNAPC5 (ENSFCAG00000012291) #32	MAP2K1 (ENSFCAG00000028389) #33	TIPIN (ENSFCAG00000035191) #34	DIS3L (ENSFCAG00000029869) #35	MEGF11 (ENSFCAG00000003091) #36	RAB11A (ENSFCAG00000030174) #37	DENND4A (ENSFCAG00000008694)	SLC24A1 (ENSFCAG00000008693)	INTS14 (ENSFCAG00000008692)	HACD3 (ENSFCAG00000008691)
Caniformia	ANCESTRAL SPECIES	12	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Ursidae	ANCESTRAL SPECIES	21	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B.p	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Ursus	ANCESTRAL SPECIES	37	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B.p	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
American black bear	MODERN SPECIES	83														C15orf61 (ENSUAMG00000020551) #20	IQCH (ENSUAMG00000020552) #21	AAGAB (ENSUAMG00000020553) #22	SMAD3 (ENSUAMG00000020554) #23	SMAD6 (ENSUAMG00000020556) #26
Polar bear	MODERN SPECIES	320	GLCE (ENSUMAG00000011629)	NOX5 (ENSUMAG00000011648) #7	SPESP1 (ENSUMAG00000011718) #8	ENSUMAG00000011724	ENSUMAG00000011740 #10	CORO2B (ENSUMAG00000011755) #11	ITGA11 (ENSUMAG00000011792) #12	FEM1B (ENSUMAG00000011958) #13	ENSUMAG00000011962 #14	CALML4 (ENSUMAG00000011979) #15	PIAS1 (ENSUMAG00000011980) #16	ENSUMAG00000011983	MAP2K5 (ENSUMAG00000011992) #19	C15orf61 (ENSUMAG00000012016) #20	IQCH (ENSUMAG00000012020) #21	AAGAB (ENSUMAG00000012048) #22	ENSUMAG00000012057 #23	LCTL (ENSUMAG00000012072) #29	ZWILCH (ENSUMAG00000012145) #30	RPL4 (ENSUMAG00000012178) #31	MAP2K1 (ENSUMAG00000012208) #33	TIPIN (ENSUMAG00000012215) #34	DIS3L (ENSUMAG00000012227) #35	MEGF11 (ENSUMAG00000012242) #36	RAB11A (ENSUMAG00000012273) #37	DENND4A (ENSUMAG00000012290)	SLC24A1 (ENSUMAG00000012325)	INTS14 (ENSUMAG00000012368)	HACD3 (ENSUMAG00000012379)	DPP8 (ENSUMAG00000012441)	ENSUMAG00000012451
Giant Panda	MODERN SPECIES	15	GLCE (ENSAMEG00000030318)	ENSAMEG00000020008	NOX5 (ENSAMEG00000014136) #7	SPESP1 (ENSAMEG00000014134) #8	ENSAMEG00000014117 #10	CORO2B (ENSAMEG00000014093) #11	ITGA11 (ENSAMEG00000014076) #12	FEM1B (ENSAMEG00000014073) #13	CLN6 (ENSAMEG00000014058) #14	CALML4 (ENSAMEG00000014054) #15	PIAS1 (ENSAMEG00000014025) #16	SKOR1 (ENSAMEG00000004996) #17	MAP2K5 (ENSAMEG00000005013) #19	C15orf61 (ENSAMEG00000029099) #20	IQCH (ENSAMEG00000005044) #21	AAGAB (ENSAMEG00000028433) #22	SMAD3 (ENSAMEG00000003318) #23	SMAD6 (ENSAMEG00000029979) #26	LCTL (ENSAMEG00000003300) #29	ZWILCH (ENSAMEG00000003251) #30	ENSAMEG00000029170 #31	SNAPC5 (ENSAMEG00000003249) #32	MAP2K1 (ENSAMEG00000003218) #33	TIPIN (ENSAMEG00000027725) #34	DIS3L (ENSAMEG00000003166) #35	MEGF11 (ENSAMEG00000003131) #36	RAB11A (ENSAMEG00000003119) #37	DENND4A (ENSAMEG00000003046)	SLC24A1 (ENSAMEG00000003029)	INTS14 (ENSAMEG00000003002)	HACD3 (ENSAMEG00000002983)
Mustelinae	ANCESTRAL SPECIES	66	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Ferret	MODERN SPECIES	228	GLCE (ENSMPUG00000000209)	NOX5 (ENSMPUG00000000210) #7	SPESP1 (ENSMPUG00000000214) #8	ENSMPUG00000000216	ENSMPUG00000000218 #10	CORO2B (ENSMPUG00000000220) #11	ITGA11 (ENSMPUG00000000221) #12	FEM1B (ENSMPUG00000000266) #13	CLN6 (ENSMPUG00000000267) #14	CALML4 (ENSMPUG00000000270) #15	PIAS1 (ENSMPUG00000000281) #16	SKOR1 (ENSMPUG00000000283) #17	MAP2K5 (ENSMPUG00000000285) #19	C15orf61 (ENSMPUG00000000287) #20	IQCH (ENSMPUG00000000289) #21	AAGAB (ENSMPUG00000000292) #22	SMAD3 (ENSMPUG00000000304) #23	SMAD6 (ENSMPUG00000000307) #26	ENSMPUG00000000309	LCTL (ENSMPUG00000000312) #29	ZWILCH (ENSMPUG00000000333) #30	ENSMPUG00000000337 #31	SNAPC5 (ENSMPUG00000000356) #32	MAP2K1 (ENSMPUG00000000363) #33	TIPIN (ENSMPUG00000000365) #34	DIS3L (ENSMPUG00000000378) #35	MEGF11 (ENSMPUG00000000383) #36	RAB11A (ENSMPUG00000000387) #37	DENND4A (ENSMPUG00000000388)	SLC24A1 (ENSMPUG00000000468)	INTS14 (ENSMPUG00000000472)
American mink	MODERN SPECIES	46	GLCE (ENSNVIG00000015508)	NOX5 (ENSNVIG00000015522) #7	SPESP1 (ENSNVIG00000015552) #8	ENSNVIG00000015562	ENSNVIG00000015596 #10	CORO2B (ENSNVIG00000015623) #11	ENSNVIG00000015659	ITGA11 (ENSNVIG00000015665) #12	FEM1B (ENSNVIG00000015730) #13	CLN6 (ENSNVIG00000015741) #14	CALML4 (ENSNVIG00000015844) #15	PIAS1 (ENSNVIG00000015868) #16	SKOR1 (ENSNVIG00000015923) #17	MP2K5 (ENSNVIG00000015958) #19	IQCH (ENSNVIG00000016136) #21	AAGAB (ENSNVIG00000016212) #22	SMAD3 (ENSNVIG00000016249) #23	SMAD6 (ENSNVIG00000016271) #26	LCTL (ENSNVIG00000016282) #29	ZWILC (ENSNVIG00000016326) #30	RPL4 (ENSNVIG00000016412) #31	SNAPC5 (ENSNVIG00000016483) #32	MAP2K1 (ENSNVIG00000016498) #33	TIPIN (ENSNVIG00000016513) #34	DIS3L (ENSNVIG00000016535) #35	MEGF11 (ENSNVIG00000016583) #36	RAB11A (ENSNVIG00000016821) #37	DENND4A (ENSNVIG00000016862)	SLC24A1 (ENSNVIG00000017089)	CO044 (ENSNVIG00000017199)	HACD3 (ENSNVIG00000017259)
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES	15	ENSGT00940000163568	ENSGT00940000153533.a.m.b.b	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218.m #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00950000185603	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00940000163568	ENSGT00940000153533.a.m.b.b	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218.m #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00950000185603	ENSGT00390000013696 #30	ENSGT00390000018145.lc.a #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914 #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Dingo	MODERN SPECIES	205	ENSCAFG00020007559	NOX5 (ENSCAFG00020007565) #7	SPESP1 (ENSCAFG00020007667) #8	ENSCAFG00020007670 #10	ENSCAFG00020007674	CORO2B (ENSCAFG00020007691) #11	ITGA11 (ENSCAFG00020007730) #12	FEM1B (ENSCAFG00020008006) #13	CLN6 (ENSCAFG00020008011) #14	CALML4 (ENSCAFG00020008020) #15	PIAS1 (ENSCAFG00020008026) #16	SKOR1 (ENSCAFG00020008049) #17	MAP2K5 (ENSCAFG00020008071) #19	C15orf61 (ENSCAFG00020008094) #20	IQCH (ENSCAFG00020008118) #21	ENSCAFG00020008170 #22	SMAD3 (ENSCAFG00020008177) #23	SMAD6 (ENSCAFG00020008193) #26	LCTL (ENSCAFG00020008195) #29	ZWILCH (ENSCAFG00020008215) #30	ENSCAFG00020008355 #31	SNAPC5 (ENSCAFG00020008387) #32	MAP2K1 (ENSCAFG00020008392) #33	TIPIN (ENSCAFG00020008398) #34	DIS3L (ENSCAFG00020008413) #35	MEGF11 (ENSCAFG00020008443) #36	RAB11A (ENSCAFG00020008478) #37	DENND4A (ENSCAFG00020008501)	SLC24A1 (ENSCAFG00020008562)	INTS14 (ENSCAFG00020008669)	HACD3 (ENSCAFG00020008678)
Dog	MODERN SPECIES	23	GLCE (ENSCAFG00845020635)	ENSCAFG00845020567	NOX5 (ENSCAFG00845020023) #7	SPESP1 (ENSCAFG00845019873) #8	ANP32A (ENSCAFG00845019800) #10	CORO2B (ENSCAFG00845019590) #11	ITGA11 (ENSCAFG00845019410) #12	FEM1B (ENSCAFG00845019340) #13	CLN6 (ENSCAFG00845018935) #14	CALML4 (ENSCAFG00845018790) #15	PIAS1 (ENSCAFG00845018319) #16	SKOR1 (ENSCAFG00845017976) #17	MAP2K5 (ENSCAFG00845017514) #19	C15orf61 (ENSCAFG00845017380) #20	IQCH (ENSCAFG00845017088) #21	AAGAB (ENSCAFG00845016886) #22	SMAD3 (ENSCAFG00845016639) #23	SMAD6 (ENSCAFG00845016415) #26	LCTL (ENSCAFG00845016168) #29	ENSCAFG00845016122	ZWILCH (ENSCAFG00845015845) #30	RPL4 (ENSCAFG00845015609) #31	SNAPC5 (ENSCAFG00845015512) #32	MAP2K1 (ENSCAFG00845015371) #33	ENSCAFG00845015268	TIPIN (ENSCAFG00845015229) #34	DIS3L (ENSCAFG00845015076) #35	ENSCAFG00845014976 #36	RAB11A (ENSCAFG00845027320) #37	DENND4A (ENSCAFG00845026536)	SLC24A1 (ENSCAFG00845026323)
Red fox	MODERN SPECIES		GLCE (ENSVVUG00000014760)	ENSVVUG00000014756	NOX5 (ENSVVUG00000014734) #7	SPESP1 (ENSVVUG00000014730) #8	ANP32A (ENSVVUG00000014726) #10	CORO2B (ENSVVUG00000014724) #11	ITGA11 (ENSVVUG00000014719) #12	FEM1B (ENSVVUG00000014718) #13	CLN6 (ENSVVUG00000014717) #14	ENSVVUG00000014716 #15	PIAS1 (ENSVVUG00000014713) #16	ENSVVUG00000014708 #17	MAP2K5 (ENSVVUG00000014703) #19	C15orf61 (ENSVVUG00000014693) #20	IQCH (ENSVVUG00000014665) #21	AAGAB (ENSVVUG00000014658) #22	SMAD3 (ENSVVUG00000014647) #23	SMAD6 (ENSVVUG00000014625) #26	ENSVVUG00000014615	ENSVVUG00000014612	LCTL (ENSVVUG00000014585) #29	ENSVVUG00000014578	ZWILCH (ENSVVUG00000014559) #30	ENSVVUG00000014531 #31	SNAPC5 (ENSVVUG00000014527) #32	MAP2K1 (ENSVVUG00000014514) #33	TIPIN (ENSVVUG00000014501) #34	DIS3L (ENSVVUG00000014492) #35	MEGF11 (ENSVVUG00000014448) #36	RAB11A (ENSVVUG00000014435) #37	DENND4A (ENSVVUG00000014392)
Canidae	ANCESTRAL SPECIES																	ENSGT00390000007218.n #22
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00390000007218.n #22
Dingo	MODERN SPECIES	271	TUBB6 (ENSCAFG00020023964)	CIDEA (ENSCAFG00020023962)	ENSCAFG00020023958	IMPA2 (ENSCAFG00020023957)	MPPE1 (ENSCAFG00020023956)	GNAL (ENSCAFG00020023942)	ENSCAFG00020023932	PIEZO2 (ENSCAFG00020023811)	NAPG (ENSCAFG00020023797)	APCDD1 (ENSCAFG00020023796)	ENSCAFG00020023792	VAPA (ENSCAFG00020023791)	ENSCAFG00020023790	ENSCAFG00020023787	ENSCAFG00020023786	ENSCAFG00020023785 #22	PPP4R1 (ENSCAFG00020023782)	RALBP1 (ENSCAFG00020023780)	ENSCAFG00020023779	TWSG1 (ENSCAFG00020023775)	ENSCAFG00020023774	ENSCAFG00020023769	NDUFV2 (ENSCAFG00020023766)	MTCL1 (ENSCAFG00020023727)	RAB12 (ENSCAFG00020023721)	PTPRM (ENSCAFG00020022563)	LRRC30 (ENSCAFG00020022537)	ENSCAFG00020022536	ENSCAFG00020022535	ENSCAFG00020022531	ENSCAFG00020022530
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914.db.a #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Equus	ANCESTRAL SPECIES	4	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465 #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914.eb #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Donkey	MODERN SPECIES	11	ENSEASG00005025046	NOX5 (ENSEASG00005006228) #7	SPESP1 (ENSEASG00005028304) #8	ENSEASG00005006243 #10	CORO2B (ENSEASG00005006245) #11	ITGA11 (ENSEASG00005006251) #12	FEM1B (ENSEASG00005006255) #13	CLN6 (ENSEASG00005034200) #14	CALML4 (ENSEASG00005033729) #15	PIAS1 (ENSEASG00005006262) #16	ENSEASG00005006267	SKOR1 (ENSEASG00005006277) #17	MAP2K5 (ENSEASG00005006290) #19	ENSEASG00005006297 #20	IQCH (ENSEASG00005006301) #21	AAGAB (ENSEASG00005006311) #22	SMAD3 (ENSEASG00005006315) #23	ENSEASG00005025450 #26	LCTL (ENSEASG00005006319) #29	ZWILCH (ENSEASG00005006339) #30	RPL4 (ENSEASG00005006373) #31	SNAPC5 (ENSEASG00005006384) #32	MAP2K1 (ENSEASG00005006387) #33	TIPIN (ENSEASG00005006396) #34	DIS3L (ENSEASG00005006407) #35	MEGF11 (ENSEASG00005006429) #36	RAB11A (ENSEASG00005006431) #37	DENND4A (ENSEASG00005006437)	SLC24A1 (ENSEASG00005006448)	INTS14 (ENSEASG00005006454)	HACD3 (ENSEASG00005006456)
Horse	MODERN SPECIES		GLCE (ENSECAG00000014998)	NOX5 (ENSECAG00000018409) #7	SPESP1 (ENSECAG00000002377) #8	ENSECAG00000002541 #10	CORO2B (ENSECAG00000014020) #11	ITGA11 (ENSECAG00000023104) #12	FEM1B (ENSECAG00000015587)	CLN6 (ENSECAG00000016991) #14	CALML4 (ENSECAG00000021844) #15	PIAS1 (ENSECAG00000007993) #16	ENSECAG00000005747	SKOR1 (ENSECAG00000036584) #17	MAP2K5 (ENSECAG00000022411) #19	ENSECAG00000029823	IQCH (ENSECAG00000007674) #21	AAGAB (ENSECAG00000013142) #22	ENSECAG00000047849 #21	SMAD3 (ENSECAG00000020259) #23	SMAD6 (ENSECAG00000013706) #26	LCTL (ENSECAG00000014254) #29	ZWILCH (ENSECAG00000018367) #30	RPL4 (ENSECAG00000023179) #31	MAP2K1 (ENSECAG00000010640) #33	TIPIN (ENSECAG00000004590) #34	DIS3L (ENSECAG00000007302) #35	MEGF11 (ENSECAG00000000706) #36	RAB11A (ENSECAG00000023865) #37	DENND4A (ENSECAG00000024306)	SLC24A1 (ENSECAG00000013327)	INTS14 (ENSECAG00000018884)	HACD3 (ENSECAG00000023082)
Chiroptera	ANCESTRAL SPECIES	17	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465.h #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914.db.a #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Microchiroptera	ANCESTRAL SPECIES	20	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591 #7	ENSGT00390000005362 #8	ENSGT00950000182907.a.b.b.b #10	ENSGT00940000158689 #11	ENSGT00940000155465.h #12	ENSGT00940000161115 #13	ENSGT00400000022240 #14	ENSGT00940000157859 #15	ENSGT01030000234539.a.a.b.a.b #16	ENSGT00940000158440 #17	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #26	ENSGT00910000147041 #27	ENSGT00940000157369 #29	ENSGT00390000013696 #30	ENSGT00390000018145 #31	ENSGT00390000010331 #32	ENSGT00940000153487.b.b #33	ENSGT00390000005764 #34	ENSGT00530000063106.B #35	ENSGT00940000155333.B #36	ENSGT00940000154914.db.a #37	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Greater horseshoe bat	MODERN SPECIES	24	PAQR5 (ENSRFEG00010003129)	GLCE (ENSRFEG00010003151)	ENSRFEG00010003165	SPESP1 (ENSRFEG00010003175) #8	ENSRFEG00010003201 #10	CORO2B (ENSRFEG00010003225) #11	ITGA11 (ENSRFEG00010003262) #12	FEM1B (ENSRFEG00010003282) #13	CLN6 (ENSRFEG00010003356) #14	ENSRFEG00010003398 #15	ENSRFEG00010003431 #16	ENSRFEG00010003474	SKOR1 (ENSRFEG00010003500) #17	MAP2K5 (ENSRFEG00010003624) #19	IQCH (ENSRFEG00010003782) #21	AAGAB (ENSRFEG00010003850) #22	SMAD3 (ENSRFEG00010003872) #23	SMAD6 (ENSRFEG00010003887) #26	ENSRFEG00010003900 #27	LCTL (ENSRFEG00010003917) #29	ZWILCH (ENSRFEG00010003952) #30	ENSRFEG00010003980 #31	SNAPC5 (ENSRFEG00010003999) #32	MAP2K1 (ENSRFEG00010004010) #33	TIPIN (ENSRFEG00010004026) #34	DIS3L (ENSRFEG00010004058) #35	MEGF11 (ENSRFEG00010004126) #36	ENSRFEG00010004168 #37	DENND4A (ENSRFEG00010004242)	SLC24A1 (ENSRFEG00010004368)	INTS14 (ENSRFEG00010004454)
Microbat	MODERN SPECIES	1275								ITGA11 (ENSMLUG00000008993) #12	FEM1B (ENSMLUG00000008987) #13	CLN6 (ENSMLUG00000008964) #14	CALML4 (ENSMLUG00000010350) #15	PIAS1 (ENSMLUG00000010321) #16	MAP2K5 (ENSMLUG00000002205) #19	C15orf61 (ENSMLUG00000029534) #20	IQCH (ENSMLUG00000002192) #21	AAGAB (ENSMLUG00000002191) #22	SMAD3 (ENSMLUG00000002185) #23
Megabat	MODERN SPECIES	3284															IQCH (ENSPVAG00000002628) #21	AAGAB (ENSPVAG00000002627) #22	SMAD3 (ENSPVAG00000002626) #23