Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00940000162591	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Glires	ANCESTRAL SPECIES	15	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00940000162591	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00940000162591	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Myomorpha	ANCESTRAL SPECIES	25	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Muroidea	ANCESTRAL SPECIES	23	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Mus	ANCESTRAL SPECIES	4	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859.e.b ##16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00940000154925.c.a #30	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37
Mouse	MODERN SPECIES	18	Kif23 (ENSMUSG00000032254) #7	Paqr5 (ENSMUSG00000032278) #8	Glce (ENSMUSG00000032252) #9	Spesp1 (ENSMUSG00000046846) #10	Anp32a (ENSMUSG00000032249) #11	Coro2b (ENSMUSG00000041729) #12	Itga11 (ENSMUSG00000032243) #13	Fem1b (ENSMUSG00000032244) #14	Cln6 (ENSMUSG00000032245) #15	Calml4 (ENSMUSG00000032246) #16	Pias1 (ENSMUSG00000032405) #17	Skor1 (ENSMUSG00000022245) #18	Map2k5 (ENSMUSG00000058444) #19	2300009A05Rik (ENSMUSG00000032403) #20	Iqch (ENSMUSG00000037801) #21	Aagab (ENSMUSG00000037257) #22	Smad3 (ENSMUSG00000032402) #23	Smad6 (ENSMUSG00000036867) #24	Lctl (ENSMUSG00000032401) #25	Zwilch (ENSMUSG00000032400) #26	Rpl4 (ENSMUSG00000032399) #27	Snapc5 (ENSMUSG00000032398) #28	Map2k1 (ENSMUSG00000004936) #29	Uchl4 (ENSMUSG00000035337) #30	Tipin (ENSMUSG00000032397) #31	Dis3l (ENSMUSG00000032396) #32	Megf11 (ENSMUSG00000036466) #33	Rab11a (ENSMUSG00000004771) #34	Dennd4a (ENSMUSG00000053641) #35	Slc24a1 (ENSMUSG00000034452) #36	Ints14 (ENSMUSG00000034263) #37
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859.e.b ##16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00940000154925.c.a #30	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37
spretus	MODERN SPECIES	18	Paqr5 (MGP_SPRETEiJ_G0033458) #8	Glce (MGP_SPRETEiJ_G0033459) #9	Spesp1 (MGP_SPRETEiJ_G0033460) #10	Anp32a (MGP_SPRETEiJ_G0033461) #11	Coro2b (MGP_SPRETEiJ_G0033462) #12	Itga11 (MGP_SPRETEiJ_G0033463) #13	Fem1b (MGP_SPRETEiJ_G0033464) #14	Cln6 (MGP_SPRETEiJ_G0033465) #15	MGP_SPRETEiJ_G0033466	Calml4 (MGP_SPRETEiJ_G0033467) ##16	Pias1 (MGP_SPRETEiJ_G0033468) #17	Skor1 (MGP_SPRETEiJ_G0033469) #18	Map2k5 (MGP_SPRETEiJ_G0033470) #19	2300009A05Rik (MGP_SPRETEiJ_G0033471) #20	Iqch (MGP_SPRETEiJ_G0033472) #21	Aagab (MGP_SPRETEiJ_G0033473) #22	Smad3 (MGP_SPRETEiJ_G0033474) #23	Smad6 (MGP_SPRETEiJ_G0033475) #24	Lctl (MGP_SPRETEiJ_G0033476) #25	Zwilch (MGP_SPRETEiJ_G0033477) #26	Rpl4 (MGP_SPRETEiJ_G0033478) #27	Snapc5 (MGP_SPRETEiJ_G0033479) #28	Map2k1 (MGP_SPRETEiJ_G0033480) #29	MGP_SPRETEiJ_G0033481 ##30	Tipin (MGP_SPRETEiJ_G0033482) #31	Dis3l (MGP_SPRETEiJ_G0033483) #32	Megf11 (MGP_SPRETEiJ_G0033484) #33	Rab11a (MGP_SPRETEiJ_G0033485) #34	Dennd4a (MGP_SPRETEiJ_G0033486) #35	Slc24a1 (MGP_SPRETEiJ_G0033487) #36	Ints14 (MGP_SPRETEiJ_G0033488) #37
Steppe mouse	MODERN SPECIES	3365	Paqr5 (ENSMSIG00000001567) #8	Glce (ENSMSIG00000001614) #9	Spesp1 (ENSMSIG00000001679) #10	ENSMSIG00000001693 #11	Coro2b (ENSMSIG00000001799) #12	Itga11 (ENSMSIG00000001884) #13	Fem1b (ENSMSIG00000001951) #14	Cln6 (ENSMSIG00000001974) #15	ENSMSIG00000001996 ##16	Pias1 (ENSMSIG00000002027) #17	Skor1 (ENSMSIG00000002179) #18	Map2k5 (ENSMSIG00000002321) #19	2300009A05Rik (ENSMSIG00000002599) #20	Iqch (ENSMSIG00000002651) #21	ENSMSIG00000003630	Aagab (ENSMSIG00000003642) #22	Smad3 (ENSMSIG00000003679) #23	ENSMSIG00000003710	Smad6 (ENSMSIG00000003718) #24	ENSMSIG00000003749	ENSMSIG00000003769	Lctl (ENSMSIG00000003776) #25	Zwilch (ENSMSIG00000003872) #26	Rpl4 (ENSMSIG00000004124) #27	Snapc5 (ENSMSIG00000004231) #28	Map2k1 (ENSMSIG00000004246) #29	Uchl4 (ENSMSIG00000004289) #30	Tipin (ENSMSIG00000004296) #31	Dis3l (ENSMSIG00000004353) #32	Megf11 (ENSMSIG00000004481) #33	Rab11a (ENSMSIG00000004938) #34
Ryukyu mouse	MODERN SPECIES	18	Kif23 (MGP_CAROLIEiJ_G0032319) #7	Paqr5 (MGP_CAROLIEiJ_G0032320) #8	Glce (MGP_CAROLIEiJ_G0032321) #9	Spesp1 (MGP_CAROLIEiJ_G0032322) #10	Anp32a (MGP_CAROLIEiJ_G0032323) #11	Coro2b (MGP_CAROLIEiJ_G0032324) #12	Itga11 (MGP_CAROLIEiJ_G0032325) #13	Fem1b (MGP_CAROLIEiJ_G0032326) #14	Cln6 (MGP_CAROLIEiJ_G0032327) #15	Calml4 (MGP_CAROLIEiJ_G0032328) #16	Pias1 (MGP_CAROLIEiJ_G0032329) #17	Skor1 (MGP_CAROLIEiJ_G0032330) #18	Map2k5 (MGP_CAROLIEiJ_G0032331) #19	2300009A05Rik (MGP_CAROLIEiJ_G0032332) #20	Iqch (MGP_CAROLIEiJ_G0032333) #21	Aagab (MGP_CAROLIEiJ_G0032334) #22	Smad3 (MGP_CAROLIEiJ_G0032335) #23	Smad6 (MGP_CAROLIEiJ_G0032336) #24	Lctl (MGP_CAROLIEiJ_G0032337) #25	Zwilch (MGP_CAROLIEiJ_G0032338) #26	Rpl4 (MGP_CAROLIEiJ_G0032339) #27	Snapc5 (MGP_CAROLIEiJ_G0032340) #28	Map2k1 (MGP_CAROLIEiJ_G0032341) #29	MGP_CAROLIEiJ_G0032342 ##30	Tipin (MGP_CAROLIEiJ_G0032343) #31	Dis3l (MGP_CAROLIEiJ_G0032344) #32	Megf11 (MGP_CAROLIEiJ_G0032345) #33	Rab11a (MGP_CAROLIEiJ_G0032346) #34	Dennd4a (MGP_CAROLIEiJ_G0032347) #35	Slc24a1 (MGP_CAROLIEiJ_G0032348) #36	Ints14 (MGP_CAROLIEiJ_G0032349) #37
Shrew mouse	MODERN SPECIES	1	Kif23 (MGP_PahariEiJ_G0015185) #7	Paqr5 (MGP_PahariEiJ_G0015186) #8	Glce (MGP_PahariEiJ_G0015187) #9	Spesp1 (MGP_PahariEiJ_G0015188) #10	Anp32a (MGP_PahariEiJ_G0015189) #11	Coro2b (MGP_PahariEiJ_G0015190) #12	Itga11 (MGP_PahariEiJ_G0015191) #13	Fem1b (MGP_PahariEiJ_G0015192) #14	MGP_PahariEiJ_G0015193	Calml4 (MGP_PahariEiJ_G0015194) #16	Pias1 (MGP_PahariEiJ_G0015195) #17	Skor1 (MGP_PahariEiJ_G0015196) #18	Map2k5 (MGP_PahariEiJ_G0015197) #19	2300009A05Rik (MGP_PahariEiJ_G0015198) #20	Iqch (MGP_PahariEiJ_G0015199) #21	Aagab (MGP_PahariEiJ_G0015200) #22	Smad3 (MGP_PahariEiJ_G0015201) #23	Smad6 (MGP_PahariEiJ_G0015202) #24	Zwilch (MGP_PahariEiJ_G0015204) #26	Rpl4 (MGP_PahariEiJ_G0015205) #27	Snapc5 (MGP_PahariEiJ_G0015206) #28	Map2k1 (MGP_PahariEiJ_G0015207) #29	Tipin (MGP_PahariEiJ_G0015208) #31	Dis3l (MGP_PahariEiJ_G0015209) #32	Megf11 (MGP_PahariEiJ_G0015210) #33	Rab11a (MGP_PahariEiJ_G0015211) #34	Dennd4a (MGP_PahariEiJ_G0015212) #35	Slc24a1 (MGP_PahariEiJ_G0015213) #36	Ints14 (MGP_PahariEiJ_G0015214) #37	Hacd3 (MGP_PahariEiJ_G0015215)	Dpp8 (MGP_PahariEiJ_G0015216)
Rat	MODERN SPECIES	18	Paqr5 (ENSRNOG00000014164) #8	Glce (ENSRNOG00000025372) #9	Spesp1 (ENSRNOG00000025359) #10	Anp32a (ENSRNOG00000014846) #11	Coro2b (ENSRNOG00000015257) #12	Itga11 (ENSRNOG00000006723) #13	Fem1b (ENSRNOG00000007077) #14	Cln6 (ENSRNOG00000007164) #15	Calml4 (ENSRNOG00000038202) #16	Pias1 (ENSRNOG00000034272) #17	Skor1 (ENSRNOG00000013959) #18	Map2k5 (ENSRNOG00000007926) #19	AC132740.1 (ENSRNOG00000054780)	C8h15orf61 (ENSRNOG00000008340) #20	Iqch (ENSRNOG00000008353) #21	Aagab (ENSRNOG00000008424) #22	Smad3 (ENSRNOG00000008620) #23	Smad6 (ENSRNOG00000009173) #24	Lctl (ENSRNOG00000009193) #25	Zwilch (ENSRNOG00000009303) #26	Rpl4 (ENSRNOG00000009378) #27	Map2k1 (ENSRNOG00000010176) #29	Tipin (ENSRNOG00000043068) #31	Dis3l (ENSRNOG00000010537) #32	Megf11 (ENSRNOG00000010634) #33	Rab11a (ENSRNOG00000011302) #34	LOC120094392 (ENSRNOG00000071140)	Dennd4a (ENSRNOG00000011739) #35	Slc24a1 (ENSRNOG00000052051) #36	Ints14 (ENSRNOG00000012469) #37	Hacd3 (ENSRNOG00000030232)
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145.kb #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Golden Hamster	MODERN SPECIES	672	ENSMAUG00000008843	ENSMAUG00000007063	Kif23 (ENSMAUG00000009848) #7	Paqr5 (ENSMAUG00000009377) #8	Glce (ENSMAUG00000013447) #9	Spesp1 (ENSMAUG00000008837) #10	Anp32a (ENSMAUG00000000632) #11	Coro2b (ENSMAUG00000009618) #12	Itga11 (ENSMAUG00000002222) #13	Cln6 (ENSMAUG00000009546) #15	Calml4 (ENSMAUG00000015006) #16	Pias1 (ENSMAUG00000000785) #17	Skor1 (ENSMAUG00000020780) #18	Map2k5 (ENSMAUG00000015370) #19	Iqch (ENSMAUG00000004333) #21	Aagab (ENSMAUG00000005383) #22	Smad3 (ENSMAUG00000022258) #23	Smad6 (ENSMAUG00000009859) #24	Lctl (ENSMAUG00000009957) #25	Zwilch (ENSMAUG00000021210) #26	Rpl4 (ENSMAUG00000018867) #27	Snapc5 (ENSMAUG00000008645) #28	Map2k1 (ENSMAUG00000011379) #29	Tipin (ENSMAUG00000012421) #31	Dis3l (ENSMAUG00000008265) #32	Megf11 (ENSMAUG00000003129) #33	Rab11a (ENSMAUG00000018551) #34	Dennd4a (ENSMAUG00000018527) #35	Slc24a1 (ENSMAUG00000012813) #36	Ints14 (ENSMAUG00000020937) #37	Hacd3 (ENSMAUG00000004278)
Chinese hamster chok1gshd	MODERN SPECIES	284	Paqr5 (ENSCGRG00001021586) #8	Glce (ENSCGRG00001019156) #9	Spesp1 (ENSCGRG00001015906) #10	ENSCGRG00001022637 #11	Coro2b (ENSCGRG00001025051) #12	Itga11 (ENSCGRG00001016586) #13	Fem1b (ENSCGRG00001018487) #14	Cln6 (ENSCGRG00001016348) #15	Calml4 (ENSCGRG00001023410) #16	Pias1 (ENSCGRG00001018818) #17	Skor1 (ENSCGRG00001000300) #18	Map2k5 (ENSCGRG00001024707) #19	2300009A05Rik (ENSCGRG00001009275) #20	ENSCGRG00001000811	Iqch (ENSCGRG00001006084) #21	Aagab (ENSCGRG00001020082) #22	Smad3 (ENSCGRG00001013999) #23	Smad6 (ENSCGRG00001002733) #24	Lctl (ENSCGRG00001017716) #25	Zwilch (ENSCGRG00001018206) #26	Snapc5 (ENSCGRG00001013968) #28	Tipin (ENSCGRG00001018146) #31	Dis3l (ENSCGRG00001017825) #32	Megf11 (ENSCGRG00001019210) #33	Rab11a (ENSCGRG00001023313) #34	Dennd4a (ENSCGRG00001019979) #35	Slc24a1 (ENSCGRG00001023812) #36	Ints14 (ENSCGRG00001022061) #37	Hacd3 (ENSCGRG00001019214)	Dpp8 (ENSCGRG00001024771)	Igdcc4 (ENSCGRG00001004819)
Cricetidae_B	ANCESTRAL SPECIES	24	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Prairie vole	MODERN SPECIES	13	Glce (ENSMOCG00000019169) #9	Spesp1 (ENSMOCG00000016907) #10	ENSMOCG00000014776 #11	ENSMOCG00000004428 #11	Coro2b (ENSMOCG00000011097) #12	Itga11 (ENSMOCG00000003119) #13	Fem1b (ENSMOCG00000005442) #14	Cln6 (ENSMOCG00000021992) #15	Calml4 (ENSMOCG00000018493) #16	Pias1 (ENSMOCG00000022074) #17	ENSMOCG00000019235	Skor1 (ENSMOCG00000018261) #18	Map2k5 (ENSMOCG00000022058) #19	2300009A05Rik (ENSMOCG00000013991) #20	Iqch (ENSMOCG00000016873) #21	Aagab (ENSMOCG00000021340) #22	Smad3 (ENSMOCG00000018490) #23	Smad6 (ENSMOCG00000014458) #24	Lctl (ENSMOCG00000004744) #25	Zwilch (ENSMOCG00000017159) #26	ENSMOCG00000021901 #27	Snapc5 (ENSMOCG00000015348) #28	Map2k1 (ENSMOCG00000013072) #29	Tipin (ENSMOCG00000010343) #31	Dis3l (ENSMOCG00000005278) #32	Megf11 (ENSMOCG00000003573) #33	Rab11a (ENSMOCG00000021138) #34	Dennd4a (ENSMOCG00000008521) #35	Slc24a1 (ENSMOCG00000002968) #36	Ints14 (ENSMOCG00000020364) #37	Hacd3 (ENSMOCG00000004995)
Northern American deer mouse	MODERN SPECIES	20	Glce (ENSPEMG00000030703) #9	ENSPEMG00000017757 #10	Anp32a (ENSPEMG00000017392) #11	Coro2b (ENSPEMG00000016326) #12	Itga11 (ENSPEMG00000014149) #13	Fem1b (ENSPEMG00000028410) #14	ENSPEMG00000000682	Cln6 (ENSPEMG00000030484) #15	Calml4 (ENSPEMG00000012833) #16	Pias1 (ENSPEMG00000012119) #17	Skor1 (ENSPEMG00000010499) #18	Map2k5 (ENSPEMG00000010361) #19	2300009A05Rik (ENSPEMG00000009306) #20	Iqch (ENSPEMG00000005753) #21	ENSPEMG00000028831	Aagab (ENSPEMG00000018465) #22	Smad3 (ENSPEMG00000028676) #23	Smad6 (ENSPEMG00000017040) #24	Lctl (ENSPEMG00000016229) #25	Zwilch (ENSPEMG00000014485) #26	Rpl4 (ENSPEMG00000012064) #27	Snapc5 (ENSPEMG00000007852) #28	Map2k1 (ENSPEMG00000007282) #29	Tipin (ENSPEMG00000002370) #31	Dis3l (ENSPEMG00000001213) #32	Megf11 (ENSPEMG00000017797) #33	ENSPEMG00000021125 #34	Dennd4a (ENSPEMG00000022452) #35	Slc24a1 (ENSPEMG00000022814) #36	Ints14 (ENSPEMG00000008550) #37	Hacd3 (ENSPEMG00000008076)
Upper Galilee mountains blind mole rat	MODERN SPECIES	955	Paqr5 (ENSNGAG00000002130) #8	Glce (ENSNGAG00000014759) #9	Spesp1 (ENSNGAG00000012498) #10	ENSNGAG00000005322 #11	ENSNGAG00000017524 #11	Coro2b (ENSNGAG00000024331) #12	Itga11 (ENSNGAG00000024101) #13	ENSNGAG00000021620 #14	Cln6 (ENSNGAG00000023832) #15	Calml4 (ENSNGAG00000016088) #16	Pias1 (ENSNGAG00000022735) #17	Skor1 (ENSNGAG00000020060) #18	Map2k5 (ENSNGAG00000011076) #19	2300009A05Rik (ENSNGAG00000004715) #20	Iqch (ENSNGAG00000019505) #21	ENSNGAG00000010708 #22	Smad3 (ENSNGAG00000023535) #23	ENSNGAG00000022756	Smad6 (ENSNGAG00000021223) #24	Lctl (ENSNGAG00000012911) #25	Zwilch (ENSNGAG00000016626) #26	ENSNGAG00000006653 #27	Snapc5 (ENSNGAG00000006133) #28	Map2k1 (ENSNGAG00000006894) #29	Tipin (ENSNGAG00000018237) #31	Dis3l (ENSNGAG00000017008) #32	Megf11 (ENSNGAG00000011352) #33	Rab11a (ENSNGAG00000013726) #34	ENSNGAG00000022619 #35	Slc24a1 (ENSNGAG00000010674) #36	Ints14 (ENSNGAG00000007105) #37
Lesser Egyptian jerboa	MODERN SPECIES	92					Anp32a (ENSJJAG00000019278) #11	Coro2b (ENSJJAG00000003058) #12	Itga11 (ENSJJAG00000007244) #13	Fem1b (ENSJJAG00000018686) #14	Cln6 (ENSJJAG00000024405) #15	Calml4 (ENSJJAG00000014113) #16	ENSJJAG00000019728 #17	Skor1 (ENSJJAG00000003624) #18	Map2k5 (ENSJJAG00000024208) #19	2300009A05Rik (ENSJJAG00000019436) #20	Iqch (ENSJJAG00000024416) #21	ENSJJAG00000018312 #22	Smad3 (ENSJJAG00000021414) #23	Smad6 (ENSJJAG00000019623) #24	Lctl (ENSJJAG00000013579) #25	Zwilch (ENSJJAG00000010189) #26	ENSJJAG00000013677 #27	Snapc5 (ENSJJAG00000022013) #28	Map2k1 (ENSJJAG00000021452) #29	Tipin (ENSJJAG00000017947) #31	Dis3l (ENSJJAG00000016147) #32	ENSJJAG00000019234	Megf11 (ENSJJAG00000023890) #33	ENSJJAG00000015445 #34	ENSJJAG00000012113 #35	Slc24a1 (ENSJJAG00000009344) #36	Ints14 (ENSJJAG00000005359) #37
Kangaroo rat	MODERN SPECIES	330												Skor1 (ENSDORG00000005677) #18	Map2k5 (ENSDORG00000005673) #19	2300009A05Rik (ENSDORG00000028687) #20	Iqch (ENSDORG00000006468) #21	ENSDORG00000026611 #22	Smad3 (ENSDORG00000029949) #23	ENSDORG00000026894	Smad6 (ENSDORG00000028234) #24	Lctl (ENSDORG00000016291) #25	Zwilch (ENSDORG00000016288) #26	Rpl4 (ENSDORG00000016287) #27	Snapc5 (ENSDORG00000030051) #28	Map2k1 (ENSDORG00000001301) #29	Tipin (ENSDORG00000028988) #31	Dis3l (ENSDORG00000014909) #32	Megf11 (ENSDORG00000001008) #33	ENSDORG00000026125	ENSDORG00000028034 #34	Dennd4a (ENSDORG00000002146) #35	Slc24a1 (ENSDORG00000007185) #36
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00940000162591	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Hystricomorpha	ANCESTRAL SPECIES	36	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145.vb #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Hystricomorpha_a	ANCESTRAL SPECIES	38	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145.vb #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Hystricomorpha_b	ANCESTRAL SPECIES	35	ENSGT00940000155837 #7	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145.vb #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Degu	DUPLICATION
Degu	MODERN SPECIES	67	GLCE (ENSODEG00000015883) #9	ENSODEG00000016071 #11	CORO2B (ENSODEG00000016099) #12	ITGA11 (ENSODEG00000015700) #13	ENSODEG00000020366	ENSODEG00000016475 #14	CLN6 (ENSODEG00000015888) #15	CALML4 (ENSODEG00000015441) #16	PIAS1 (ENSODEG00000016418) #17	SKOR1 (ENSODEG00000015903) #18	MAP2K5 (ENSODEG00000015607) #19	ENSODEG00000016511	C15orf61 (ENSODEG00000016721) #20	IQCH (ENSODEG00000016134) #21	ENSODEG00000020336	ENSODEG00000015886 #22	SMAD3 (ENSODEG00000015739) #23	SMAD6 (ENSODEG00000016272) #24	ENSODEG00000020317	LCTL (ENSODEG00000016271) #25	ZWILCH (ENSODEG00000016374) #26	ENSODEG00000016495 #27	MAP2K1 (ENSODEG00000016739) #29	DIS3L (ENSODEG00000015811) #32	MEGF11 (ENSODEG00000015967) #33	ENSODEG00000016878 #34	ENSODEG00000016435	ENSODEG00000016544 #35	SLC24A1 (ENSODEG00000016047) #36	INTS14 (ENSODEG00000017006) #37	HACD3 (ENSODEG00000016975)
Degu	MODERN SPECIES	122														ENSODEG00000006114	ZPLD1 (ENSODEG00000007525)	ENSODEG00000007067 #22	ENSODEG00000005667	NFKBIZ (ENSODEG00000005703)	ENSODEG00000005326	ENSODEG00000007096	NXPE3 (ENSODEG00000006809)	ENSODEG00000006503	ENSODEG00000005842	ZBTB11 (ENSODEG00000006262)	ENSODEG00000019290	ENSODEG00000005207	SENP7 (ENSODEG00000006738)	ENSODEG00000005550	IMPG2 (ENSODEG00000006079)	ABI3BP (ENSODEG00000005855)	ENSODEG00000005535
Long-tailed chinchilla	MODERN SPECIES	157	KIF23 (ENSCLAG00000009415) #7	PAQR5 (ENSCLAG00000008730) #8	GLCE (ENSCLAG00000009057) #9	SPESP1 (ENSCLAG00000009992) #10	ENSCLAG00000010256 #11	CORO2B (ENSCLAG00000006658) #12	ITGA11 (ENSCLAG00000006568) #13	FEM1B (ENSCLAG00000004834) #14	CLN6 (ENSCLAG00000007035) #15	CALML4 (ENSCLAG00000008707) #16	PIAS1 (ENSCLAG00000008129) #17	SKOR1 (ENSCLAG00000007488) #18	MAP2K5 (ENSCLAG00000005277) #19	C15orf61 (ENSCLAG00000008894) #20	IQCH (ENSCLAG00000011031) #21	AAGAB (ENSCLAG00000008364) #22	SMAD3 (ENSCLAG00000005027) #23	ENSCLAG00000005550 #24	LCTL (ENSCLAG00000004564) #25	ZWILCH (ENSCLAG00000010124) #26	RPL4 (ENSCLAG00000010827) #27	SNAPC5 (ENSCLAG00000011660) #28	MAP2K1 (ENSCLAG00000013042) #29	TIPIN (ENSCLAG00000004924) #31	DIS3L (ENSCLAG00000005741) #32	MEGF11 (ENSCLAG00000013146) #33	RAB11A (ENSCLAG00000007435) #34	DENND4A (ENSCLAG00000007003) #35	SLC24A1 (ENSCLAG00000013073) #36	INTS14 (ENSCLAG00000009395) #37	HACD3 (ENSCLAG00000010725)
Guinea pig	MODERN SPECIES						GLCE (ENSCPOG00000020608) #9	ENSCPOG00000008829 #11	CORO2B (ENSCPOG00000023117) #12	ITGA11 (ENSCPOG00000012877) #13	FEM1B (ENSCPOG00000031057) #14	CLN6 (ENSCPOG00000007282) #15	CALML4 (ENSCPOG00000033517) #16	PIAS1 (ENSCPOG00000007278) #17	SKOR1 (ENSCPOG00000012665) #18	MAP2K5 (ENSCPOG00000000970) #19	C15orf61 (ENSCPOG00000022542) #20	AAGAB (ENSCPOG00000000965) #22	SMAD3 (ENSCPOG00000021314) #23	SMAD6 (ENSCPOG00000001535) #24	DST (ENSCPOG00000005092)	BEND6 (ENSCPOG00000015453)	ZNF451 (ENSCPOG00000002491)	BAG2 (ENSCPOG00000040302)	RAB23 (ENSCPOG00000030218)	ENSCPOG00000035048	PRIM2 (ENSCPOG00000003912)	KHDRBS2 (ENSCPOG00000025621)	LGSN (ENSCPOG00000008736)	PTP4A1 (ENSCPOG00000032105)	ENSCPOG00000007146	ENSCPOG00000030019	DAPK2 (ENSCPOG00000000890)
Naked mole-rat female	MODERN SPECIES	19	KIF23 (ENSHGLG00000009784) #7	PAQR5 (ENSHGLG00000009727) #8	GLCE (ENSHGLG00000033764) #9	SPESP1 (ENSHGLG00000046924) #10	ENSHGLG00000013229 #11	CORO2B (ENSHGLG00000015273) #12	ITGA11 (ENSHGLG00000007233) #13	FEM1B (ENSHGLG00000017948) #14	CLN6 (ENSHGLG00000017958) #15	Calml4 (ENSHGLG00000018794) #16	Pias1 (ENSHGLG00000019002) #17	SKOR1 (ENSHGLG00000017297) #18	MAP2K5 (ENSHGLG00000006627) #19	C15orf61 (ENSHGLG00000038870) #20	ENSHGLG00000026352 #21	AAGAB (ENSHGLG00000038898) #22	SMAD3 (ENSHGLG00000048787) #23	SMAD6 (ENSHGLG00000008453) #24	LCTL (ENSHGLG00000015669) #25	ZWILCH (ENSHGLG00000016059) #26	ENSHGLG00000008054 #27	ENSHGLG00000040904 #28	ENSHGLG00000010036 #29	ENSHGLG00000048822	ENSHGLG00000005971 #31	ENSHGLG00000007770 #32	MEGF11 (ENSHGLG00000011012) #33	RAB11A (ENSHGLG00000048551) #34	ENSHGLG00000044288	DENND4A (ENSHGLG00000009810) #35	SLC24A1 (ENSHGLG00000008872) #36
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00940000162591	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Marmotini	ANCESTRAL SPECIES	9	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00940000162591	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00940000158844 #8	ENSGT00390000006043 #9	ENSGT00940000162591	ENSGT00390000005362 #10	ENSGT00950000182907.a.b.b.b #11	ENSGT00940000158689 #12	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000015942 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37	ENSGT00530000062962.b.a
Squirrel	MODERN SPECIES	71	RPLP1 (ENSSTOG00000027893)	KIF23 (ENSSTOG00000022809) #7	PAQR5 (ENSSTOG00000000507) #8	GLCE (ENSSTOG00000019509) #9	ENSSTOG00000015929 #11	CORO2B (ENSSTOG00000015918) #12	ITGA11 (ENSSTOG00000015545) #13	FEM1B (ENSSTOG00000015544) #14	CLN6 (ENSSTOG00000015540) #15	CALML4 (ENSSTOG00000015539) #16	PIAS1 (ENSSTOG00000015532) #17	SKOR1 (ENSSTOG00000002675) #18	MAP2K5 (ENSSTOG00000010318) #19	C15orf61 (ENSSTOG00000010312) #20	IQCH (ENSSTOG00000010299) #21	AAGAB (ENSSTOG00000010291) #22	SMAD3 (ENSSTOG00000010286) #23	SMAD6 (ENSSTOG00000000696) #24	LCTL (ENSSTOG00000028073) #25	ZWILCH (ENSSTOG00000009607) #26	RPL4 (ENSSTOG00000009221) #27	SNAPC5 (ENSSTOG00000009201) #28	MAP2K1 (ENSSTOG00000009190) #29	TIPIN (ENSSTOG00000009182) #31	DIS3L (ENSSTOG00000009158) #32	MEGF11 (ENSSTOG00000015258) #33	RAB11A (ENSSTOG00000015255) #34	DENND4A (ENSSTOG00000026966) #35	SLC24A1 (ENSSTOG00000002228) #36	INTS14 (ENSSTOG00000002217) #37	HACD3 (ENSSTOG00000002211)
Arctic ground squirrel	MODERN SPECIES	397						ITGA11 (ENSUPAG00010017705) #13	FEM1B (ENSUPAG00010017736) #14	CLN6 (ENSUPAG00010017740) #15	CALML4 (ENSUPAG00010017747) #16	PIAS1 (ENSUPAG00010017772) #17	ENSUPAG00010017781	SKOR1 (ENSUPAG00010017792) #18	MAP2K5 (ENSUPAG00010017819) #19	C15orf61 (ENSUPAG00010017904) #20	IQCH (ENSUPAG00010017914) #21	AAGAB (ENSUPAG00010018001) #22	SMAD3 (ENSUPAG00010018010) #23	ENSUPAG00010018048	SMAD6 (ENSUPAG00010018050) #24	LCTL (ENSUPAG00010018063) #25	ZWILCH (ENSUPAG00010018079) #26	RPL4 (ENSUPAG00010018119) #27	SNAPC5 (ENSUPAG00010018142) #28	MAP2K1 (ENSUPAG00010018149) #29
Alpin marmot	MODERN SPECIES	7	PAQR5 (ENSMMMG00000005396) #8	GLCE (ENSMMMG00000005432) #9	NOX5 (ENSMMMG00000005478)	SPESP1 (ENSMMMG00000005545) #10	ENSMMMG00000005555 #11	CORO2B (ENSMMMG00000005600) #12	ITGA11 (ENSMMMG00000005622) #13	ENSMMMG00000005671 #14	CLN6 (ENSMMMG00000005687) #15	CALML4 (ENSMMMG00000005699) #16	PIAS1 (ENSMMMG00000005733) #17	SKOR1 (ENSMMMG00000005773) #18	MAP2K5 (ENSMMMG00000005809) #19	ENSMMMG00000005844	IQCH (ENSMMMG00000005869) #21	AAGAB (ENSMMMG00000005970) #22	SMAD3 (ENSMMMG00000005977) #23	ENSMMMG00000006027	SMAD6 (ENSMMMG00000006032) #24	LCTL (ENSMMMG00000006061) #25	ZWILCH (ENSMMMG00000006077) #26	ENSMMMG00000006104	RPL4 (ENSMMMG00000006109) #27	SNAPC5 (ENSMMMG00000006163) #28	MAP2K1 (ENSMMMG00000006173) #29	TIPIN (ENSMMMG00000006196) #31	DIS3L (ENSMMMG00000006220) #32	MEGF11 (ENSMMMG00000006311) #33	RAB11A (ENSMMMG00000006747) #34	ENSMMMG00000006762	DENND4A (ENSMMMG00000006769) #35
Eurasian red squirrel	MODERN SPECIES	11	GLCE (ENSSVLG00005007694) #9	NOX5 (ENSSVLG00005007597)	SPESP1 (ENSSVLG00005007565) #10	ENSSVLG00005007513	ENSSVLG00005007452 #11	CORO2B (ENSSVLG00005007364) #12	ITGA11 (ENSSVLG00005007326) #13	FEM1B (ENSSVLG00005007302) #14	CLN6 (ENSSVLG00005007215) #15	CALML4 (ENSSVLG00005007109) #16	PIAS1 (ENSSVLG00005007019) #17	SKOR1 (ENSSVLG00005006917) #18	MAP2K5 (ENSSVLG00005006656) #19	C15orf61 (ENSSVLG00005006592) #20	IQCH (ENSSVLG00005025085) #21	AAGAB (ENSSVLG00005025018) #22	SMAD3 (ENSSVLG00005024991) #23	ENSSVLG00005024968	SMAD6 (ENSSVLG00005024946) #24	LCTL (ENSSVLG00005024912) #25	ZWILCH (ENSSVLG00005024833) #26	ENSSVLG00005024744 #27	SNAPC5 (ENSSVLG00005024729) #28	MAP2K1 (ENSSVLG00005024707) #29	TIPIN (ENSSVLG00005024668) #31	DIS3L (ENSSVLG00005024622) #32	MEGF11 (ENSSVLG00005024351) #33	RAB11A (ENSSVLG00005024246) #34	DENND4A (ENSSVLG00005024160) #35	SLC24A1 (ENSSVLG00005023979) #36	INTS14 (ENSSVLG00005023820) #37
Lagomorpha	ANCESTRAL SPECIES	7	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d.j	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000155465 #13	ENSGT00940000161115 #14	ENSGT00400000022240 #15	ENSGT00940000157859 #16	ENSGT01030000234539.a.a.b.a.b #17	ENSGT00940000158440 #18	ENSGT00940000157505 #19	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #23	ENSGT00950000183167.a.b.a	ENSGT00940000158146 #24	ENSGT00940000157369 #25	ENSGT00390000013696 #26	ENSGT00390000018145 #27	ENSGT00390000010331 #28	ENSGT00940000153487.b.b #29	ENSGT00390000005764 #31	ENSGT00530000063106.B #32	ENSGT00940000155333.B #33	ENSGT00940000154914 #34	ENSGT00940000155836.B #35	ENSGT01030000234532.B.e.b #36	ENSGT00390000009486 #37
Rabbit	MODERN SPECIES	8	ENSOCUG00000009207	HEXA (ENSOCUG00000009190)	CELF6 (ENSOCUG00000021663)	PARP6 (ENSOCUG00000004374)	ENSOCUG00000006119	GRAMD2A (ENSOCUG00000006107)	SENP8 (ENSOCUG00000026054)	MYO9A (ENSOCUG00000017425)	ENSOCUG00000036279	ITGA11 (ENSOCUG00000017726) #13	FEM1B (ENSOCUG00000026586) #14	CLN6 (ENSOCUG00000017533) #15	PIAS1 (ENSOCUG00000000618) #17	MAP2K5 (ENSOCUG00000009024) #19	IQCH (ENSOCUG00000006647) #21	AAGAB (ENSOCUG00000006644) #22	ENSOCUG00000039204	SMAD3 (ENSOCUG00000029601) #23	ENSOCUG00000014186	ENSOCUG00000006134 #24	LCTL (ENSOCUG00000021771) #25	ZWILCH (ENSOCUG00000008800) #26	ENSOCUG00000008794 #27	SNAPC5 (ENSOCUG00000039231) #28	MAP2K1 (ENSOCUG00000008782) #29	ENSOCUG00000023060	TIPIN (ENSOCUG00000002212) #31	DIS3L (ENSOCUG00000002206) #32	MEGF11 (ENSOCUG00000014760) #33	RAB11A (ENSOCUG00000014755) #34	DENND4A (ENSOCUG00000007953) #35
Pika	MODERN SPECIES	1524																AAGAB (ENSOPRG00000015012) #22	SMAD3 (ENSOPRG00000014996) #23	SMAD6 (ENSOPRG00000014974) #24	IQCH (ENSOPRG00000014936) #21
Tree shrew	MODERN SPECIES	3464															IQCH (ENSTBEG00000005168) #21	AAGAB (ENSTBEG00000004459) #22	SMAD3 (ENSTBEG00000003884) #23