Glires	ANCESTRAL SPECIES	15	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Lagomorpha	ANCESTRAL SPECIES	7	ENSGT00390000008107.c.b #8	ENSGT00940000154201.a.b #9	ENSGT00950000183129.b.b #10	ENSGT00390000008859.b.d.j #11	ENSGT00940000159572 #12	ENSGT00390000014038 #13	ENSGT00940000154905 #14	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00950000183167.a.b.a #25	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Rabbit	MODERN SPECIES	8	ENSOCUG00000009207 #7	HEXA (ENSOCUG00000009190) #8	CELF6 (ENSOCUG00000021663) #9	PARP6 (ENSOCUG00000004374) #10	ENSOCUG00000006119 #11	GRAMD2A (ENSOCUG00000006107) #12	SENP8 (ENSOCUG00000026054) #13	MYO9A (ENSOCUG00000017425) #14	ENSOCUG00000036279 #15	ITGA11 (ENSOCUG00000017726) #16	FEM1B (ENSOCUG00000026586) #17	CLN6 (ENSOCUG00000017533) #18	PIAS1 (ENSOCUG00000000618) #19	MAP2K5 (ENSOCUG00000009024) #20	IQCH (ENSOCUG00000006647) #21	AAGAB (ENSOCUG00000006644) #22	ENSOCUG00000039204 #23	SMAD3 (ENSOCUG00000029601) #24	ENSOCUG00000014186 #25	ENSOCUG00000006134 #26	LCTL (ENSOCUG00000021771) #27	ZWILCH (ENSOCUG00000008800) #28	ENSOCUG00000008794 #29	SNAPC5 (ENSOCUG00000039231) #30	MAP2K1 (ENSOCUG00000008782) #31	ENSOCUG00000023060 #32	TIPIN (ENSOCUG00000002212) #33	DIS3L (ENSOCUG00000002206) #34	MEGF11 (ENSOCUG00000014760) #35	RAB11A (ENSOCUG00000014755) #36	DENND4A (ENSOCUG00000007953) #37
Pika	MODERN SPECIES	1524																AAGAB (ENSOPRG00000015012) #22	SMAD3 (ENSOPRG00000014996) #24	SMAD6 (ENSOPRG00000014974) #26	IQCH (ENSOPRG00000014936) #21
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Kangaroo rat	MODERN SPECIES	330												Skor1 (ENSDORG00000005677)	Map2k5 (ENSDORG00000005673) #20	2300009A05Rik (ENSDORG00000028687)	Iqch (ENSDORG00000006468) #21	ENSDORG00000026611 #22	Smad3 (ENSDORG00000029949) #24	ENSDORG00000026894	Smad6 (ENSDORG00000028234) #26	Lctl (ENSDORG00000016291) #27	Zwilch (ENSDORG00000016288) #28	Rpl4 (ENSDORG00000016287) #29	Snapc5 (ENSDORG00000030051) #30	Map2k1 (ENSDORG00000001301) #31	Tipin (ENSDORG00000028988) #33	Dis3l (ENSDORG00000014909) #34	Megf11 (ENSDORG00000001008) #35	ENSDORG00000026125	ENSDORG00000028034 #36	Dennd4a (ENSDORG00000002146) #37	Slc24a1 (ENSDORG00000007185)
Myomorpha	ANCESTRAL SPECIES	25	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Muroidea	ANCESTRAL SPECIES	23	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145.kb #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Golden Hamster	MODERN SPECIES	672	ENSMAUG00000008843	ENSMAUG00000007063	Kif23 (ENSMAUG00000009848)	Paqr5 (ENSMAUG00000009377)	Glce (ENSMAUG00000013447)	Spesp1 (ENSMAUG00000008837)	Anp32a (ENSMAUG00000000632)	Coro2b (ENSMAUG00000009618)	Itga11 (ENSMAUG00000002222) #16	Cln6 (ENSMAUG00000009546) #18	Calml4 (ENSMAUG00000015006)	Pias1 (ENSMAUG00000000785) #19	Skor1 (ENSMAUG00000020780)	Map2k5 (ENSMAUG00000015370) #20	Iqch (ENSMAUG00000004333) #21	Aagab (ENSMAUG00000005383) #22	Smad3 (ENSMAUG00000022258) #24	Smad6 (ENSMAUG00000009859) #26	Lctl (ENSMAUG00000009957) #27	Zwilch (ENSMAUG00000021210) #28	Rpl4 (ENSMAUG00000018867) #29	Snapc5 (ENSMAUG00000008645) #30	Map2k1 (ENSMAUG00000011379) #31	Tipin (ENSMAUG00000012421) #33	Dis3l (ENSMAUG00000008265) #34	Megf11 (ENSMAUG00000003129) #35	Rab11a (ENSMAUG00000018551) #36	Dennd4a (ENSMAUG00000018527) #37	Slc24a1 (ENSMAUG00000012813)	Ints14 (ENSMAUG00000020937)	Hacd3 (ENSMAUG00000004278)
Chinese hamster chok1gshd	MODERN SPECIES	284	Paqr5 (ENSCGRG00001021586)	Glce (ENSCGRG00001019156)	Spesp1 (ENSCGRG00001015906)	ENSCGRG00001022637	Coro2b (ENSCGRG00001025051)	Itga11 (ENSCGRG00001016586) #16	Fem1b (ENSCGRG00001018487) #17	Cln6 (ENSCGRG00001016348) #18	Calml4 (ENSCGRG00001023410)	Pias1 (ENSCGRG00001018818) #19	Skor1 (ENSCGRG00001000300)	Map2k5 (ENSCGRG00001024707) #20	2300009A05Rik (ENSCGRG00001009275)	ENSCGRG00001000811	Iqch (ENSCGRG00001006084) #21	Aagab (ENSCGRG00001020082) #22	Smad3 (ENSCGRG00001013999) #24	Smad6 (ENSCGRG00001002733) #26	Lctl (ENSCGRG00001017716) #27	Zwilch (ENSCGRG00001018206) #28	Snapc5 (ENSCGRG00001013968) #30	Tipin (ENSCGRG00001018146) #33	Dis3l (ENSCGRG00001017825) #34	Megf11 (ENSCGRG00001019210) #35	Rab11a (ENSCGRG00001023313) #36	Dennd4a (ENSCGRG00001019979) #37	Slc24a1 (ENSCGRG00001023812)	Ints14 (ENSCGRG00001022061)	Hacd3 (ENSCGRG00001019214)	Dpp8 (ENSCGRG00001024771)	Igdcc4 (ENSCGRG00001004819)
Cricetidae_B	ANCESTRAL SPECIES	24	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Prairie vole	MODERN SPECIES	13	Glce (ENSMOCG00000019169)	Spesp1 (ENSMOCG00000016907)	ENSMOCG00000014776	ENSMOCG00000004428	Coro2b (ENSMOCG00000011097)	Itga11 (ENSMOCG00000003119) #16	Fem1b (ENSMOCG00000005442) #17	Cln6 (ENSMOCG00000021992) #18	Calml4 (ENSMOCG00000018493)	Pias1 (ENSMOCG00000022074) #19	ENSMOCG00000019235	Skor1 (ENSMOCG00000018261)	Map2k5 (ENSMOCG00000022058) #20	2300009A05Rik (ENSMOCG00000013991)	Iqch (ENSMOCG00000016873) #21	Aagab (ENSMOCG00000021340) #22	Smad3 (ENSMOCG00000018490) #24	Smad6 (ENSMOCG00000014458) #26	Lctl (ENSMOCG00000004744) #27	Zwilch (ENSMOCG00000017159) #28	ENSMOCG00000021901 #29	Snapc5 (ENSMOCG00000015348) #30	Map2k1 (ENSMOCG00000013072) #31	Tipin (ENSMOCG00000010343) #33	Dis3l (ENSMOCG00000005278) #34	Megf11 (ENSMOCG00000003573) #35	Rab11a (ENSMOCG00000021138) #36	Dennd4a (ENSMOCG00000008521) #37	Slc24a1 (ENSMOCG00000002968)	Ints14 (ENSMOCG00000020364)	Hacd3 (ENSMOCG00000004995)
Northern American deer mouse	MODERN SPECIES	20	Glce (ENSPEMG00000030703)	ENSPEMG00000017757	Anp32a (ENSPEMG00000017392)	Coro2b (ENSPEMG00000016326)	Itga11 (ENSPEMG00000014149) #16	Fem1b (ENSPEMG00000028410) #17	ENSPEMG00000000682	Cln6 (ENSPEMG00000030484) #18	Calml4 (ENSPEMG00000012833)	Pias1 (ENSPEMG00000012119) #19	Skor1 (ENSPEMG00000010499)	Map2k5 (ENSPEMG00000010361) #20	2300009A05Rik (ENSPEMG00000009306)	Iqch (ENSPEMG00000005753) #21	ENSPEMG00000028831	Aagab (ENSPEMG00000018465) #22	Smad3 (ENSPEMG00000028676) #24	Smad6 (ENSPEMG00000017040) #26	Lctl (ENSPEMG00000016229) #27	Zwilch (ENSPEMG00000014485) #28	Rpl4 (ENSPEMG00000012064) #29	Snapc5 (ENSPEMG00000007852) #30	Map2k1 (ENSPEMG00000007282) #31	Tipin (ENSPEMG00000002370) #33	Dis3l (ENSPEMG00000001213) #34	Megf11 (ENSPEMG00000017797) #35	ENSPEMG00000021125 #36	Dennd4a (ENSPEMG00000022452) #37	Slc24a1 (ENSPEMG00000022814)	Ints14 (ENSPEMG00000008550)	Hacd3 (ENSPEMG00000008076)
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Mus	ANCESTRAL SPECIES	4	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859.e.b	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00940000154925.c.a	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
Mouse	MODERN SPECIES	18	Kif23 (ENSMUSG00000032254)	Paqr5 (ENSMUSG00000032278)	Glce (ENSMUSG00000032252)	Spesp1 (ENSMUSG00000046846)	Anp32a (ENSMUSG00000032249)	Coro2b (ENSMUSG00000041729)	Itga11 (ENSMUSG00000032243) #16	Fem1b (ENSMUSG00000032244) #17	Cln6 (ENSMUSG00000032245) #18	Calml4 (ENSMUSG00000032246)	Pias1 (ENSMUSG00000032405) #19	Skor1 (ENSMUSG00000022245)	Map2k5 (ENSMUSG00000058444) #20	2300009A05Rik (ENSMUSG00000032403)	Iqch (ENSMUSG00000037801) #21	Aagab (ENSMUSG00000037257) #22	Smad3 (ENSMUSG00000032402) #24	Smad6 (ENSMUSG00000036867) #26	Lctl (ENSMUSG00000032401) #27	Zwilch (ENSMUSG00000032400) #28	Rpl4 (ENSMUSG00000032399) #29	Snapc5 (ENSMUSG00000032398) #30	Map2k1 (ENSMUSG00000004936) #31	Uchl4 (ENSMUSG00000035337)	Tipin (ENSMUSG00000032397) #33	Dis3l (ENSMUSG00000032396) #34	Megf11 (ENSMUSG00000036466) #35	Rab11a (ENSMUSG00000004771) #36	Dennd4a (ENSMUSG00000053641) #37	Slc24a1 (ENSMUSG00000034452)	Ints14 (ENSMUSG00000034263)
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859.e.b	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00940000154925.c.a	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486
spretus	MODERN SPECIES	18	Paqr5 (MGP_SPRETEiJ_G0033458)	Glce (MGP_SPRETEiJ_G0033459)	Spesp1 (MGP_SPRETEiJ_G0033460)	Anp32a (MGP_SPRETEiJ_G0033461)	Coro2b (MGP_SPRETEiJ_G0033462)	Itga11 (MGP_SPRETEiJ_G0033463) #16	Fem1b (MGP_SPRETEiJ_G0033464) #17	Cln6 (MGP_SPRETEiJ_G0033465) #18	MGP_SPRETEiJ_G0033466	Calml4 (MGP_SPRETEiJ_G0033467)	Pias1 (MGP_SPRETEiJ_G0033468) #19	Skor1 (MGP_SPRETEiJ_G0033469)	Map2k5 (MGP_SPRETEiJ_G0033470) #20	2300009A05Rik (MGP_SPRETEiJ_G0033471)	Iqch (MGP_SPRETEiJ_G0033472) #21	Aagab (MGP_SPRETEiJ_G0033473) #22	Smad3 (MGP_SPRETEiJ_G0033474) #24	Smad6 (MGP_SPRETEiJ_G0033475) #26	Lctl (MGP_SPRETEiJ_G0033476) #27	Zwilch (MGP_SPRETEiJ_G0033477) #28	Rpl4 (MGP_SPRETEiJ_G0033478) #29	Snapc5 (MGP_SPRETEiJ_G0033479) #30	Map2k1 (MGP_SPRETEiJ_G0033480) #31	MGP_SPRETEiJ_G0033481	Tipin (MGP_SPRETEiJ_G0033482) #33	Dis3l (MGP_SPRETEiJ_G0033483) #34	Megf11 (MGP_SPRETEiJ_G0033484) #35	Rab11a (MGP_SPRETEiJ_G0033485) #36	Dennd4a (MGP_SPRETEiJ_G0033486) #37	Slc24a1 (MGP_SPRETEiJ_G0033487)	Ints14 (MGP_SPRETEiJ_G0033488)
Steppe mouse	MODERN SPECIES	3365	Paqr5 (ENSMSIG00000001567)	Glce (ENSMSIG00000001614)	Spesp1 (ENSMSIG00000001679)	ENSMSIG00000001693	Coro2b (ENSMSIG00000001799)	Itga11 (ENSMSIG00000001884) #16	Fem1b (ENSMSIG00000001951) #17	Cln6 (ENSMSIG00000001974) #18	ENSMSIG00000001996	Pias1 (ENSMSIG00000002027) #19	Skor1 (ENSMSIG00000002179)	Map2k5 (ENSMSIG00000002321) #20	2300009A05Rik (ENSMSIG00000002599)	Iqch (ENSMSIG00000002651) #21	ENSMSIG00000003630	Aagab (ENSMSIG00000003642) #22	Smad3 (ENSMSIG00000003679) #24	ENSMSIG00000003710	Smad6 (ENSMSIG00000003718) #26	ENSMSIG00000003749	ENSMSIG00000003769	Lctl (ENSMSIG00000003776) #27	Zwilch (ENSMSIG00000003872) #28	Rpl4 (ENSMSIG00000004124) #29	Snapc5 (ENSMSIG00000004231) #30	Map2k1 (ENSMSIG00000004246) #31	Uchl4 (ENSMSIG00000004289)	Tipin (ENSMSIG00000004296) #33	Dis3l (ENSMSIG00000004353) #34	Megf11 (ENSMSIG00000004481) #35	Rab11a (ENSMSIG00000004938) #36
Ryukyu mouse	MODERN SPECIES	18	Kif23 (MGP_CAROLIEiJ_G0032319)	Paqr5 (MGP_CAROLIEiJ_G0032320)	Glce (MGP_CAROLIEiJ_G0032321)	Spesp1 (MGP_CAROLIEiJ_G0032322)	Anp32a (MGP_CAROLIEiJ_G0032323)	Coro2b (MGP_CAROLIEiJ_G0032324)	Itga11 (MGP_CAROLIEiJ_G0032325) #16	Fem1b (MGP_CAROLIEiJ_G0032326) #17	Cln6 (MGP_CAROLIEiJ_G0032327) #18	Calml4 (MGP_CAROLIEiJ_G0032328)	Pias1 (MGP_CAROLIEiJ_G0032329) #19	Skor1 (MGP_CAROLIEiJ_G0032330)	Map2k5 (MGP_CAROLIEiJ_G0032331) #20	2300009A05Rik (MGP_CAROLIEiJ_G0032332)	Iqch (MGP_CAROLIEiJ_G0032333) #21	Aagab (MGP_CAROLIEiJ_G0032334) #22	Smad3 (MGP_CAROLIEiJ_G0032335) #24	Smad6 (MGP_CAROLIEiJ_G0032336) #26	Lctl (MGP_CAROLIEiJ_G0032337) #27	Zwilch (MGP_CAROLIEiJ_G0032338) #28	Rpl4 (MGP_CAROLIEiJ_G0032339) #29	Snapc5 (MGP_CAROLIEiJ_G0032340) #30	Map2k1 (MGP_CAROLIEiJ_G0032341) #31	MGP_CAROLIEiJ_G0032342	Tipin (MGP_CAROLIEiJ_G0032343) #33	Dis3l (MGP_CAROLIEiJ_G0032344) #34	Megf11 (MGP_CAROLIEiJ_G0032345) #35	Rab11a (MGP_CAROLIEiJ_G0032346) #36	Dennd4a (MGP_CAROLIEiJ_G0032347) #37	Slc24a1 (MGP_CAROLIEiJ_G0032348)	Ints14 (MGP_CAROLIEiJ_G0032349)
Shrew mouse	MODERN SPECIES	1	Kif23 (MGP_PahariEiJ_G0015185)	Paqr5 (MGP_PahariEiJ_G0015186)	Glce (MGP_PahariEiJ_G0015187)	Spesp1 (MGP_PahariEiJ_G0015188)	Anp32a (MGP_PahariEiJ_G0015189)	Coro2b (MGP_PahariEiJ_G0015190)	Itga11 (MGP_PahariEiJ_G0015191) #16	Fem1b (MGP_PahariEiJ_G0015192) #17	MGP_PahariEiJ_G0015193	Calml4 (MGP_PahariEiJ_G0015194)	Pias1 (MGP_PahariEiJ_G0015195) #19	Skor1 (MGP_PahariEiJ_G0015196)	Map2k5 (MGP_PahariEiJ_G0015197) #20	2300009A05Rik (MGP_PahariEiJ_G0015198)	Iqch (MGP_PahariEiJ_G0015199) #21	Aagab (MGP_PahariEiJ_G0015200) #22	Smad3 (MGP_PahariEiJ_G0015201) #24	Smad6 (MGP_PahariEiJ_G0015202) #26	Zwilch (MGP_PahariEiJ_G0015204) #28	Rpl4 (MGP_PahariEiJ_G0015205) #29	Snapc5 (MGP_PahariEiJ_G0015206) #30	Map2k1 (MGP_PahariEiJ_G0015207) #31	Tipin (MGP_PahariEiJ_G0015208) #33	Dis3l (MGP_PahariEiJ_G0015209) #34	Megf11 (MGP_PahariEiJ_G0015210) #35	Rab11a (MGP_PahariEiJ_G0015211) #36	Dennd4a (MGP_PahariEiJ_G0015212) #37	Slc24a1 (MGP_PahariEiJ_G0015213)	Ints14 (MGP_PahariEiJ_G0015214)	Hacd3 (MGP_PahariEiJ_G0015215)	Dpp8 (MGP_PahariEiJ_G0015216)
Rat	MODERN SPECIES	18	Paqr5 (ENSRNOG00000014164)	Glce (ENSRNOG00000025372)	Spesp1 (ENSRNOG00000025359)	Anp32a (ENSRNOG00000014846)	Coro2b (ENSRNOG00000015257)	Itga11 (ENSRNOG00000006723) #16	Fem1b (ENSRNOG00000007077) #17	Cln6 (ENSRNOG00000007164) #18	Calml4 (ENSRNOG00000038202)	Pias1 (ENSRNOG00000034272) #19	Skor1 (ENSRNOG00000013959)	Map2k5 (ENSRNOG00000007926) #20	AC132740.1 (ENSRNOG00000054780)	C8h15orf61 (ENSRNOG00000008340)	Iqch (ENSRNOG00000008353) #21	Aagab (ENSRNOG00000008424) #22	Smad3 (ENSRNOG00000008620) #24	Smad6 (ENSRNOG00000009173) #26	Lctl (ENSRNOG00000009193) #27	Zwilch (ENSRNOG00000009303) #28	Rpl4 (ENSRNOG00000009378) #29	Map2k1 (ENSRNOG00000010176) #31	Tipin (ENSRNOG00000043068) #33	Dis3l (ENSRNOG00000010537) #34	Megf11 (ENSRNOG00000010634) #35	Rab11a (ENSRNOG00000011302) #36	LOC120094392 (ENSRNOG00000071140)	Dennd4a (ENSRNOG00000011739) #37	Slc24a1 (ENSRNOG00000052051)	Ints14 (ENSRNOG00000012469)	Hacd3 (ENSRNOG00000030232)
Upper Galilee mountains blind mole rat	MODERN SPECIES	955	Paqr5 (ENSNGAG00000002130)	Glce (ENSNGAG00000014759)	Spesp1 (ENSNGAG00000012498)	ENSNGAG00000005322	ENSNGAG00000017524	Coro2b (ENSNGAG00000024331)	Itga11 (ENSNGAG00000024101) #16	ENSNGAG00000021620 #17	Cln6 (ENSNGAG00000023832) #18	Calml4 (ENSNGAG00000016088)	Pias1 (ENSNGAG00000022735) #19	Skor1 (ENSNGAG00000020060)	Map2k5 (ENSNGAG00000011076) #20	2300009A05Rik (ENSNGAG00000004715)	Iqch (ENSNGAG00000019505) #21	ENSNGAG00000010708 #22	Smad3 (ENSNGAG00000023535) #24	ENSNGAG00000022756	Smad6 (ENSNGAG00000021223) #26	Lctl (ENSNGAG00000012911) #27	Zwilch (ENSNGAG00000016626) #28	ENSNGAG00000006653 #29	Snapc5 (ENSNGAG00000006133) #30	Map2k1 (ENSNGAG00000006894) #31	Tipin (ENSNGAG00000018237) #33	Dis3l (ENSNGAG00000017008) #34	Megf11 (ENSNGAG00000011352) #35	Rab11a (ENSNGAG00000013726) #36	ENSNGAG00000022619 #37	Slc24a1 (ENSNGAG00000010674)	Ints14 (ENSNGAG00000007105)
Lesser Egyptian jerboa	MODERN SPECIES	92					Anp32a (ENSJJAG00000019278)	Coro2b (ENSJJAG00000003058)	Itga11 (ENSJJAG00000007244) #16	Fem1b (ENSJJAG00000018686) #17	Cln6 (ENSJJAG00000024405) #18	Calml4 (ENSJJAG00000014113)	ENSJJAG00000019728 #19	Skor1 (ENSJJAG00000003624)	Map2k5 (ENSJJAG00000024208) #20	2300009A05Rik (ENSJJAG00000019436)	Iqch (ENSJJAG00000024416) #21	ENSJJAG00000018312 #22	Smad3 (ENSJJAG00000021414) #24	Smad6 (ENSJJAG00000019623) #26	Lctl (ENSJJAG00000013579) #27	Zwilch (ENSJJAG00000010189) #28	ENSJJAG00000013677 #29	Snapc5 (ENSJJAG00000022013) #30	Map2k1 (ENSJJAG00000021452) #31	Tipin (ENSJJAG00000017947) #33	Dis3l (ENSJJAG00000016147) #34	ENSJJAG00000019234	Megf11 (ENSJJAG00000023890) #35	ENSJJAG00000015445 #36	ENSJJAG00000012113 #37	Slc24a1 (ENSJJAG00000009344)	Ints14 (ENSJJAG00000005359)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Hystricomorpha	ANCESTRAL SPECIES	36	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145.vb #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Hystricomorpha_a	ANCESTRAL SPECIES	38	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145.vb #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Hystricomorpha_b	ANCESTRAL SPECIES	35	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145.vb #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Degu	DUPLICATION
Degu	MODERN SPECIES	67	GLCE (ENSODEG00000015883)	ENSODEG00000016071	CORO2B (ENSODEG00000016099)	ITGA11 (ENSODEG00000015700) #16	ENSODEG00000020366	ENSODEG00000016475 #17	CLN6 (ENSODEG00000015888) #18	CALML4 (ENSODEG00000015441)	PIAS1 (ENSODEG00000016418) #19	SKOR1 (ENSODEG00000015903)	MAP2K5 (ENSODEG00000015607) #20	ENSODEG00000016511	C15orf61 (ENSODEG00000016721)	IQCH (ENSODEG00000016134) #21	ENSODEG00000020336	ENSODEG00000015886 #22	SMAD3 (ENSODEG00000015739) #24	SMAD6 (ENSODEG00000016272) #26	ENSODEG00000020317	LCTL (ENSODEG00000016271) #27	ZWILCH (ENSODEG00000016374) #28	ENSODEG00000016495 #29	MAP2K1 (ENSODEG00000016739) #31	DIS3L (ENSODEG00000015811) #34	MEGF11 (ENSODEG00000015967) #35	ENSODEG00000016878 #36	ENSODEG00000016435	ENSODEG00000016544 #37	SLC24A1 (ENSODEG00000016047)	INTS14 (ENSODEG00000017006)	HACD3 (ENSODEG00000016975)
Degu	MODERN SPECIES	122														ENSODEG00000006114	ZPLD1 (ENSODEG00000007525)	ENSODEG00000007067 #22	ENSODEG00000005667	NFKBIZ (ENSODEG00000005703)	ENSODEG00000005326	ENSODEG00000007096	NXPE3 (ENSODEG00000006809)	ENSODEG00000006503	ENSODEG00000005842	ZBTB11 (ENSODEG00000006262)	ENSODEG00000019290	ENSODEG00000005207	SENP7 (ENSODEG00000006738)	ENSODEG00000005550	IMPG2 (ENSODEG00000006079)	ABI3BP (ENSODEG00000005855)	ENSODEG00000005535
Long-tailed chinchilla	MODERN SPECIES	157	KIF23 (ENSCLAG00000009415)	PAQR5 (ENSCLAG00000008730)	GLCE (ENSCLAG00000009057)	SPESP1 (ENSCLAG00000009992)	ENSCLAG00000010256	CORO2B (ENSCLAG00000006658)	ITGA11 (ENSCLAG00000006568) #16	FEM1B (ENSCLAG00000004834) #17	CLN6 (ENSCLAG00000007035) #18	CALML4 (ENSCLAG00000008707)	PIAS1 (ENSCLAG00000008129) #19	SKOR1 (ENSCLAG00000007488)	MAP2K5 (ENSCLAG00000005277) #20	C15orf61 (ENSCLAG00000008894)	IQCH (ENSCLAG00000011031) #21	AAGAB (ENSCLAG00000008364) #22	SMAD3 (ENSCLAG00000005027) #24	ENSCLAG00000005550 #26	LCTL (ENSCLAG00000004564) #27	ZWILCH (ENSCLAG00000010124) #28	RPL4 (ENSCLAG00000010827) #29	SNAPC5 (ENSCLAG00000011660) #30	MAP2K1 (ENSCLAG00000013042) #31	TIPIN (ENSCLAG00000004924) #33	DIS3L (ENSCLAG00000005741) #34	MEGF11 (ENSCLAG00000013146) #35	RAB11A (ENSCLAG00000007435) #36	DENND4A (ENSCLAG00000007003) #37	SLC24A1 (ENSCLAG00000013073)	INTS14 (ENSCLAG00000009395)	HACD3 (ENSCLAG00000010725)
Guinea pig	MODERN SPECIES						GLCE (ENSCPOG00000020608)	ENSCPOG00000008829	CORO2B (ENSCPOG00000023117)	ITGA11 (ENSCPOG00000012877) #16	FEM1B (ENSCPOG00000031057) #17	CLN6 (ENSCPOG00000007282) #18	CALML4 (ENSCPOG00000033517)	PIAS1 (ENSCPOG00000007278) #19	SKOR1 (ENSCPOG00000012665)	MAP2K5 (ENSCPOG00000000970) #20	C15orf61 (ENSCPOG00000022542)	AAGAB (ENSCPOG00000000965) #22	SMAD3 (ENSCPOG00000021314) #24	SMAD6 (ENSCPOG00000001535) #26	DST (ENSCPOG00000005092)	BEND6 (ENSCPOG00000015453)	ZNF451 (ENSCPOG00000002491)	BAG2 (ENSCPOG00000040302)	RAB23 (ENSCPOG00000030218)	ENSCPOG00000035048	PRIM2 (ENSCPOG00000003912)	KHDRBS2 (ENSCPOG00000025621)	LGSN (ENSCPOG00000008736)	PTP4A1 (ENSCPOG00000032105)	ENSCPOG00000007146	ENSCPOG00000030019	DAPK2 (ENSCPOG00000000890)
Naked mole-rat female	MODERN SPECIES	19	KIF23 (ENSHGLG00000009784)	PAQR5 (ENSHGLG00000009727)	GLCE (ENSHGLG00000033764)	SPESP1 (ENSHGLG00000046924)	ENSHGLG00000013229	CORO2B (ENSHGLG00000015273)	ITGA11 (ENSHGLG00000007233) #16	FEM1B (ENSHGLG00000017948) #17	CLN6 (ENSHGLG00000017958) #18	Calml4 (ENSHGLG00000018794)	Pias1 (ENSHGLG00000019002) #19	SKOR1 (ENSHGLG00000017297)	MAP2K5 (ENSHGLG00000006627) #20	C15orf61 (ENSHGLG00000038870)	ENSHGLG00000026352 #21	AAGAB (ENSHGLG00000038898) #22	SMAD3 (ENSHGLG00000048787) #24	SMAD6 (ENSHGLG00000008453) #26	LCTL (ENSHGLG00000015669) #27	ZWILCH (ENSHGLG00000016059) #28	ENSHGLG00000008054 #29	ENSHGLG00000040904 #30	ENSHGLG00000010036 #31	ENSHGLG00000048822	ENSHGLG00000005971 #33	ENSHGLG00000007770 #34	MEGF11 (ENSHGLG00000011012) #35	RAB11A (ENSHGLG00000048551) #36	ENSHGLG00000044288	DENND4A (ENSHGLG00000009810) #37	SLC24A1 (ENSHGLG00000008872)
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Marmotini	ANCESTRAL SPECIES	9	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591	ENSGT00390000005362	ENSGT00950000182907.a.b.b.b	ENSGT00940000158689	ENSGT00940000155465 #16	ENSGT00940000161115 #17	ENSGT00400000022240 #18	ENSGT00940000157859	ENSGT01030000234539.a.a.b.a.b #19	ENSGT00940000158440	ENSGT00940000157505 #20	ENSGT00390000015942	ENSGT00390000008908 #21	ENSGT00390000007218 #22	ENSGT00940000153499.b.b #24	ENSGT00940000158146 #26	ENSGT00940000157369 #27	ENSGT00390000013696 #28	ENSGT00390000018145 #29	ENSGT00390000010331 #30	ENSGT00940000153487.b.b #31	ENSGT00390000005764 #33	ENSGT00530000063106.B #34	ENSGT00940000155333.B #35	ENSGT00940000154914 #36	ENSGT00940000155836.B #37	ENSGT01030000234532.B.e.b	ENSGT00390000009486	ENSGT00530000062962.b.a
Squirrel	MODERN SPECIES	71	RPLP1 (ENSSTOG00000027893)	KIF23 (ENSSTOG00000022809)	PAQR5 (ENSSTOG00000000507)	GLCE (ENSSTOG00000019509)	ENSSTOG00000015929	CORO2B (ENSSTOG00000015918)	ITGA11 (ENSSTOG00000015545) #16	FEM1B (ENSSTOG00000015544) #17	CLN6 (ENSSTOG00000015540) #18	CALML4 (ENSSTOG00000015539)	PIAS1 (ENSSTOG00000015532) #19	SKOR1 (ENSSTOG00000002675)	MAP2K5 (ENSSTOG00000010318) #20	C15orf61 (ENSSTOG00000010312)	IQCH (ENSSTOG00000010299) #21	AAGAB (ENSSTOG00000010291) #22	SMAD3 (ENSSTOG00000010286) #24	SMAD6 (ENSSTOG00000000696) #26	LCTL (ENSSTOG00000028073) #27	ZWILCH (ENSSTOG00000009607) #28	RPL4 (ENSSTOG00000009221) #29	SNAPC5 (ENSSTOG00000009201) #30	MAP2K1 (ENSSTOG00000009190) #31	TIPIN (ENSSTOG00000009182) #33	DIS3L (ENSSTOG00000009158) #34	MEGF11 (ENSSTOG00000015258) #35	RAB11A (ENSSTOG00000015255) #36	DENND4A (ENSSTOG00000026966) #37	SLC24A1 (ENSSTOG00000002228)	INTS14 (ENSSTOG00000002217)	HACD3 (ENSSTOG00000002211)
Arctic ground squirrel	MODERN SPECIES	397						ITGA11 (ENSUPAG00010017705) #16	FEM1B (ENSUPAG00010017736) #17	CLN6 (ENSUPAG00010017740) #18	CALML4 (ENSUPAG00010017747)	PIAS1 (ENSUPAG00010017772) #19	ENSUPAG00010017781	SKOR1 (ENSUPAG00010017792)	MAP2K5 (ENSUPAG00010017819) #20	C15orf61 (ENSUPAG00010017904)	IQCH (ENSUPAG00010017914) #21	AAGAB (ENSUPAG00010018001) #22	SMAD3 (ENSUPAG00010018010) #24	ENSUPAG00010018048 #25	SMAD6 (ENSUPAG00010018050) #26	LCTL (ENSUPAG00010018063) #27	ZWILCH (ENSUPAG00010018079) #28	RPL4 (ENSUPAG00010018119) #29	SNAPC5 (ENSUPAG00010018142) #30	MAP2K1 (ENSUPAG00010018149) #31
Alpin marmot	MODERN SPECIES	7	PAQR5 (ENSMMMG00000005396)	GLCE (ENSMMMG00000005432)	NOX5 (ENSMMMG00000005478)	SPESP1 (ENSMMMG00000005545)	ENSMMMG00000005555	CORO2B (ENSMMMG00000005600)	ITGA11 (ENSMMMG00000005622) #16	ENSMMMG00000005671 #17	CLN6 (ENSMMMG00000005687) #18	CALML4 (ENSMMMG00000005699)	PIAS1 (ENSMMMG00000005733) #19	SKOR1 (ENSMMMG00000005773)	MAP2K5 (ENSMMMG00000005809) #20	ENSMMMG00000005844	IQCH (ENSMMMG00000005869) #21	AAGAB (ENSMMMG00000005970) #22	SMAD3 (ENSMMMG00000005977) #24	ENSMMMG00000006027 #25	SMAD6 (ENSMMMG00000006032) #26	LCTL (ENSMMMG00000006061) #27	ZWILCH (ENSMMMG00000006077) #28	ENSMMMG00000006104	RPL4 (ENSMMMG00000006109) #29	SNAPC5 (ENSMMMG00000006163) #30	MAP2K1 (ENSMMMG00000006173) #31	TIPIN (ENSMMMG00000006196) #33	DIS3L (ENSMMMG00000006220) #34	MEGF11 (ENSMMMG00000006311) #35	RAB11A (ENSMMMG00000006747) #36	ENSMMMG00000006762	DENND4A (ENSMMMG00000006769) #37
Eurasian red squirrel	MODERN SPECIES	11	GLCE (ENSSVLG00005007694)	NOX5 (ENSSVLG00005007597)	SPESP1 (ENSSVLG00005007565)	ENSSVLG00005007513	ENSSVLG00005007452	CORO2B (ENSSVLG00005007364)	ITGA11 (ENSSVLG00005007326) #16	FEM1B (ENSSVLG00005007302) #17	CLN6 (ENSSVLG00005007215) #18	CALML4 (ENSSVLG00005007109)	PIAS1 (ENSSVLG00005007019) #19	SKOR1 (ENSSVLG00005006917)	MAP2K5 (ENSSVLG00005006656) #20	C15orf61 (ENSSVLG00005006592)	IQCH (ENSSVLG00005025085) #21	AAGAB (ENSSVLG00005025018) #22	SMAD3 (ENSSVLG00005024991) #24	ENSSVLG00005024968 #25	SMAD6 (ENSSVLG00005024946) #26	LCTL (ENSSVLG00005024912) #27	ZWILCH (ENSSVLG00005024833) #28	ENSSVLG00005024744 #29	SNAPC5 (ENSSVLG00005024729) #30	MAP2K1 (ENSSVLG00005024707) #31	TIPIN (ENSSVLG00005024668) #33	DIS3L (ENSSVLG00005024622) #34	MEGF11 (ENSSVLG00005024351) #35	RAB11A (ENSSVLG00005024246) #36	DENND4A (ENSSVLG00005024160) #37	SLC24A1 (ENSSVLG00005023979)	INTS14 (ENSSVLG00005023820)