Eutheria	ANCESTRAL SPECIES	14	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00950000185305	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00910000147297	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00950000185305	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00910000147297	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00950000185305	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00950000185305	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31
Glires	ANCESTRAL SPECIES	2	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00950000185305	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Rodentia	ANCESTRAL SPECIES	2	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00950000185305	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824.b #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824.b #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824.b #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000164003	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Hystricomorpha_b	ANCESTRAL SPECIES	63	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824.b #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000164003	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Long-tailed chinchilla	MODERN SPECIES	239	TRAIP (ENSCLAG00000007336) #7	UBA7 (ENSCLAG00000007421) #8	INKA1 (ENSCLAG00000011389) #9	CDHR4 (ENSCLAG00000015695) #10	IP6K1 (ENSCLAG00000010986) #11	GMPPB (ENSCLAG00000009088) #12	AMIGO3 (ENSCLAG00000018108) #13	RNF123 (ENSCLAG00000008303) #14	MST1 (ENSCLAG00000010949) #15	APEH (ENSCLAG00000006987) #16	BSN (ENSCLAG00000006929) #17	DAG1 (ENSCLAG00000009430) #18	NICN1 (ENSCLAG00000007906) #19	AMT (ENSCLAG00000007577) #20	TCTA (ENSCLAG00000009163) #21	RHOA (ENSCLAG00000007531) #22	USP4 (ENSCLAG00000006925) #23	C3orf84 (ENSCLAG00000006773) #24	KLHDC8B (ENSCLAG00000007333) #25	CCDC71 (ENSCLAG00000006770) #26	LAMB2 (ENSCLAG00000012420) #27	USP19 (ENSCLAG00000009469) #28	QARS1 (ENSCLAG00000009982) #29	QRICH1 (ENSCLAG00000011484) #30	NDUFAF3 (ENSCLAG00000010367) #31	IMPDH2 (ENSCLAG00000010876) #32	DALRD3 (ENSCLAG00000010911) #33	WDR6 (ENSCLAG00000013367) #34	P4HTM (ENSCLAG00000012640) #35	ARIH2 (ENSCLAG00000007056) #36	SLC25A20 (ENSCLAG00000006666) #37
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	362									RNF128 (ENSODEG00000009900)	TBC1D8B (ENSODEG00000010776)	CLDN2 (ENSODEG00000019704)	MORC4 (ENSODEG00000011266)	RBM41 (ENSODEG00000010074)	ENSODEG00000010238	DNAAF6 (ENSODEG00000009614)	ENSODEG00000019650 #22
Degu	MODERN SPECIES	63	ME1 (ENSODEG00000008180)	RWDD2A (ENSODEG00000008183)	PGM3 (ENSODEG00000008826)	DOP1A (ENSODEG00000010095)	ENSODEG00000010311	ENSODEG00000009092	TPBG (ENSODEG00000009537)	IBTK (ENSODEG00000010597)	TENT5A (ENSODEG00000008776)	BCKDHB (ENSODEG00000010271)	ENSODEG00000019538	MMUT (ENSODEG00000008529)	RHAG (ENSODEG00000010420)	CRISP2 (ENSODEG00000009452)	TFAP2D (ENSODEG00000009777)	ENSODEG00000009809 #22	TFAP2B (ENSODEG00000010145)	PKHD1 (ENSODEG00000011040)	IL17A (ENSODEG00000010713)	IL17F (ENSODEG00000010370)	ENSODEG00000009125	PAQR8 (ENSODEG00000008711)	EFHC1 (ENSODEG00000010266)	TRAM2 (ENSODEG00000008597)	TMEM14A (ENSODEG00000009025)	ENSODEG00000009677	DACT2 (ENSODEG00000009034)	SMOC2 (ENSODEG00000008584)	THBS2 (ENSODEG00000009890)	ENSODEG00000010394	ENSODEG00000009298
Degu	MODERN SPECIES	276	ENSODEG00000001093	GABRA4 (ENSODEG00000001120)	GABRB1 (ENSODEG00000001181)	ENSODEG00000001205	ATP10D (ENSODEG00000001271)	CORIN (ENSODEG00000001650)	NFXL1 (ENSODEG00000001947)	CNGA1 (ENSODEG00000002002)	NIPAL1 (ENSODEG00000002132)	TXK (ENSODEG00000000446)	TEC (ENSODEG00000000741)	ENSODEG00000000858	RASSF6 (ENSODEG00000000901)	AFM (ENSODEG00000000940)	PIH1D2 (ENSODEG00000000981)	ENSODEG00000001014 #22	AFP (ENSODEG00000001040)	ALB (ENSODEG00000001203)
Guinea pig	MODERN SPECIES	8	CAMKV (ENSCPOG00000003484)	TRAIP (ENSCPOG00000003478) #7	INKA1 (ENSCPOG00000026986) #9	UBA7 (ENSCPOG00000008926) #8	IP6K1 (ENSCPOG00000040339) #11	GMPPB (ENSCPOG00000020537) #12	AMIGO3 (ENSCPOG00000020283) #13	RNF123 (ENSCPOG00000011432) #14	MST1 (ENSCPOG00000011422) #15	APEH (ENSCPOG00000011416) #16	BSN (ENSCPOG00000040726) #17	DAG1 (ENSCPOG00000034832) #18	NICN1 (ENSCPOG00000019324) #19	AMT (ENSCPOG00000023233) #20	TCTA (ENSCPOG00000035311) #21	RHOA (ENSCPOG00000014073) #22	USP4 (ENSCPOG00000010272) #23	C3orf62 (ENSCPOG00000026439)	IHO1 (ENSCPOG00000013672)	C3orf84 (ENSCPOG00000024951) #24	KLHDC8B (ENSCPOG00000031477) #25	CCDC71 (ENSCPOG00000010009) #26	LAMB2 (ENSCPOG00000009993) #27	USP19 (ENSCPOG00000009975) #28	QARS1 (ENSCPOG00000009967) #29	ENSCPOG00000009958 #30	IMPDH2 (ENSCPOG00000009955) #32	NDUFAF3 (ENSCPOG00000009951) #31	DALRD3 (ENSCPOG00000022699) #33	WDR6 (ENSCPOG00000000708) #34	P4HTM (ENSCPOG00000008347) #35
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	27	CDHR4 (ENSHGLG00000011328) #10	IP6K1 (ENSHGLG00000040829) #11	GMPPB (ENSHGLG00000010676) #12	ENSHGLG00000041509 #14	AMIGO3 (ENSHGLG00000034610) #13	ENSHGLG00000014673 #14	APEH (ENSHGLG00000014615) #16	MST1 (ENSHGLG00000014647) #15	BSN (ENSHGLG00000014582) #17	DAG1 (ENSHGLG00000035745) #18	ENSHGLG00000049998	ENSHGLG00000043499	NICN1 (ENSHGLG00000014501) #19	AMT (ENSHGLG00000019416) #20	TCTA (ENSHGLG00000014711) #21	RHOA (ENSHGLG00000037920) #22	GPX1 (ENSHGLG00000014333)	USP4 (ENSHGLG00000014262) #23	C3orf62 (ENSHGLG00000032235)	CCDC36 (ENSHGLG00000045203)	C3orf84 (ENSHGLG00000047605) #24	KLHDC8B (ENSHGLG00000012255) #25	LAMB2 (ENSHGLG00000014718) #27	USP19 (ENSHGLG00000014432) #28	QARS1 (ENSHGLG00000014071) #29	QRICH1 (ENSHGLG00000013818) #30	IMPDH2 (ENSHGLG00000013375) #32	ENSHGLG00000012830 #31	ENSHGLG00000037627 #33	ENSHGLG00000044769 #34	P4HTM (ENSHGLG00000012350) #35
Naked mole-rat female	MODERN SPECIES	22	ITGA4 (ENSHGLG00000002811)	UBE2E3 (ENSHGLG00000038435)	CWC22 (ENSHGLG00000005692)	ENSHGLG00000034152	ENSHGLG00000020480	ZNF385B (ENSHGLG00000004054)	ENSHGLG00000020829	SESTD1 (ENSHGLG00000003644)	CCDC141 (ENSHGLG00000002888)	TTN (ENSHGLG00000036835)	ENSHGLG00000018641	FKBP7 (ENSHGLG00000019268)	PJVK (ENSHGLG00000011003)	ENSHGLG00000010663	ENSHGLG00000003065	ENSHGLG00000040220 #22	ENSHGLG00000045276	ENSHGLG00000007342	ENSHGLG00000006609	ENSHGLG00000005226	TTC30B (ENSHGLG00000042840)	ENSHGLG00000036841	AGPS (ENSHGLG00000007541)	NFE2L2 (ENSHGLG00000006475)	HNRNPA3 (ENSHGLG00000005451)	ENSHGLG00000036655	ENSHGLG00000046644	ENSHGLG00000012734	MTX2 (ENSHGLG00000004177)	HOXD1 (ENSHGLG00000004072)	HOXD3 (ENSHGLG00000003761)
Sciuridae	ANCESTRAL SPECIES	26	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824.b #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Eurasian red squirrel	MODERN SPECIES	1	INKA1 (ENSSVLG00005021510) #9	ENSSVLG00005021431	ENSSVLG00005021379	IP6K1 (ENSSVLG00005021336) #11	GMPPB (ENSSVLG00005021153) #12	AMIGO3 (ENSSVLG00005021129) #13	RNF123 (ENSSVLG00005020644) #14	MST1 (ENSSVLG00005020451) #15	APEH (ENSSVLG00005020366) #16	BSN (ENSSVLG00005020232) #17	ENSSVLG00005020188	DAG1 (ENSSVLG00005020152) #18	NICN1 (ENSSVLG00005020072) #19	AMT (ENSSVLG00005019729) #20	TCTA (ENSSVLG00005019277) #21	RHOA (ENSSVLG00005019199) #22	GPX1 (ENSSVLG00005019095)	ENSSVLG00005019055	USP4 (ENSSVLG00005018952) #23	C3orf62 (ENSSVLG00005018903)	IHO1 (ENSSVLG00005018854)	C3orf84 (ENSSVLG00005018760) #24	KLHDC8B (ENSSVLG00005018723) #25	CCDC71 (ENSSVLG00005018689) #26	USP19 (ENSSVLG00005018580) #28	QARS1 (ENSSVLG00005017939) #29	ENSSVLG00005017903	QRICH1 (ENSSVLG00005017854) #30	IMPDH2 (ENSSVLG00005017627) #32	NDUFAF3 (ENSSVLG00005017494) #31	DALRD3 (ENSSVLG00005017322) #33
Marmotini	ANCESTRAL SPECIES	25	ENSGT00390000007696.f #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824.b #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Marmotini_b	ANCESTRAL SPECIES	32	ENSGT00390000007696.f #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824.b #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	190											NPBWR1 (ENSSTOG00000031799)	ENSSTOG00000033788	RB1CC1 (ENSSTOG00000003037)	ALKAL1 (ENSSTOG00000003032)	ST18 (ENSSTOG00000016500)	ENSSTOG00000027757 #22	PCMTD1 (ENSSTOG00000005412)	SNTG1 (ENSSTOG00000006780)	SNAI2 (ENSSTOG00000028743)	CLXN (ENSSTOG00000005832)	ENSSTOG00000033326	UBE2V2 (ENSSTOG00000021769)	MCM4 (ENSSTOG00000009905)	PRKDC (ENSSTOG00000009784)	SPIDR (ENSSTOG00000010890)
Squirrel	MODERN SPECIES	129	UBA7 (ENSSTOG00000013749) #8	INKA1 (ENSSTOG00000013745) #9	CDHR4 (ENSSTOG00000024578) #10	IP6K1 (ENSSTOG00000013735) #11	GMPPB (ENSSTOG00000013725) #12	AMIGO3 (ENSSTOG00000034125) #13	RNF123 (ENSSTOG00000013698) #14	ENSSTOG00000034265	MST1 (ENSSTOG00000013686) #15	APEH (ENSSTOG00000013676) #16	BSN (ENSSTOG00000024936) #17	DAG1 (ENSSTOG00000023610) #18	NICN1 (ENSSTOG00000012434) #19	ENSSTOG00000012428 #20	TCTA (ENSSTOG00000011135) #21	RHOA (ENSSTOG00000004561) #22	GPX1 (ENSSTOG00000025544)	USP4 (ENSSTOG00000011315) #23	C3orf62 (ENSSTOG00000011308)	IHO1 (ENSSTOG00000011292)	C3orf84 (ENSSTOG00000025817) #24	KLHDC8B (ENSSTOG00000025019) #25	CCDC71 (ENSSTOG00000025759) #26	ENSSTOG00000031228	LAMB2 (ENSSTOG00000001866) #27	USP19 (ENSSTOG00000001848) #28	QARS1 (ENSSTOG00000001822) #29	QRICH1 (ENSSTOG00000001813) #30	NDUFAF3 (ENSSTOG00000001799) #31	IMPDH2 (ENSSTOG00000001805) #32	DALRD3 (ENSSTOG00000001789) #33
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	137	ENSUPAG00010002961	SOX17 (ENSUPAG00010002964)	MRPL15 (ENSUPAG00010002973)	LYPLA1 (ENSUPAG00010002986)	TCEA1 (ENSUPAG00010003008)	ENSUPAG00010003023	RGS20 (ENSUPAG00010003027)	ATP6V1H (ENSUPAG00010003037)	OPRK1 (ENSUPAG00010003107)	ENSUPAG00010003124	NPBWR1 (ENSUPAG00010003128)	ENSUPAG00010003143	RB1CC1 (ENSUPAG00010003148)	ALKAL1 (ENSUPAG00010003181)	ST18 (ENSUPAG00010003189)	ENSUPAG00010003296 #22	PCMTD1 (ENSUPAG00010003305)	PXDNL (ENSUPAG00010003311)
Arctic ground squirrel	MODERN SPECIES	26	CAMKV (ENSUPAG00010022666)	ENSUPAG00010022670 #7	UBA7 (ENSUPAG00010022671) #8	INKA1 (ENSUPAG00010022673) #9	IP6K1 (ENSUPAG00010022678) #11	GMPPB (ENSUPAG00010022679) #12	RNF123 (ENSUPAG00010022682) #14	AMIGO3 (ENSUPAG00010022704) #13	MST1 (ENSUPAG00010022707) #15	APEH (ENSUPAG00010022710) #16	BSN (ENSUPAG00010022714) #17	DAG1 (ENSUPAG00010022721) #18	NICN1 (ENSUPAG00010022727) #19	AMT (ENSUPAG00010022728) #20	TCTA (ENSUPAG00010022731) #21	RHOA (ENSUPAG00010022734) #22	GPX1 (ENSUPAG00010022736)	USP4 (ENSUPAG00010022743) #23	IHO1 (ENSUPAG00010022748)	C3orf84 (ENSUPAG00010022750) #24	KLHDC8B (ENSUPAG00010022751) #25	CCDC71 (ENSUPAG00010022756) #26	LAMB2 (ENSUPAG00010022760) #27	USP19 (ENSUPAG00010022767) #28	QARS1 (ENSUPAG00010022784) #29	QRICH1 (ENSUPAG00010022787) #30	IMPDH2 (ENSUPAG00010022794) #32	NDUFAF3 (ENSUPAG00010022795) #31	DALRD3 (ENSUPAG00010022797) #33	WDR6 (ENSUPAG00010022801) #34	P4HTM (ENSUPAG00010022803) #35
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	16	RP1 (ENSMMMG00000001046)	ENSMMMG00000001041	SOX17 (ENSMMMG00000001029)	ENSMMMG00000001024	MRPL15 (ENSMMMG00000001003)	LYPLA1 (ENSMMMG00000000994)	TCEA1 (ENSMMMG00000000970)	ATP6V1H (ENSMMMG00000000819)	OPRK1 (ENSMMMG00000000792)	ENSMMMG00000000769	ENSMMMG00000000761	NPBWR1 (ENSMMMG00000000755)	RB1CC1 (ENSMMMG00000000733)	ALKAL1 (ENSMMMG00000000712)	ST18 (ENSMMMG00000000496)	ENSMMMG00000000469 #22	PCMTD1 (ENSMMMG00000000404)	PXDNL (ENSMMMG00000000367)	SNTG1 (ENSMMMG00000000104)	ENSMMMG00000000024	ENSMMMG00000000012	SNAI2 (ENSMMMG00000022198)	CLXN (ENSMMMG00000022191)	ENSMMMG00000022170	ENSMMMG00000022167	ENSMMMG00000022157	ENSMMMG00000022151	ENSMMMG00000022149	UBE2V2 (ENSMMMG00000022141)	MCM4 (ENSMMMG00000022114)	PRKDC (ENSMMMG00000022087)
Alpin marmot	MODERN SPECIES	19	CAMKV (ENSMMMG00000003886)	ENSMMMG00000003945 #7	UBA7 (ENSMMMG00000003996) #8	INKA1 (ENSMMMG00000004578) #9	IP6K1 (ENSMMMG00000004620) #11	GMPPB (ENSMMMG00000004636) #12	RNF123 (ENSMMMG00000004667) #14	AMIGO3 (ENSMMMG00000004824) #13	MST1 (ENSMMMG00000004828) #15	APEH (ENSMMMG00000004875) #16	BSN (ENSMMMG00000004916) #17	DAG1 (ENSMMMG00000004993) #18	NICN1 (ENSMMMG00000005004) #19	AMT (ENSMMMG00000005018) #20	ENSMMMG00000005039 #21	RHOA (ENSMMMG00000005067) #22	GPX1 (ENSMMMG00000005079)	USP4 (ENSMMMG00000005114) #23	C3orf62 (ENSMMMG00000005162)	IHO1 (ENSMMMG00000005177)	C3orf84 (ENSMMMG00000005193) #24	KLHDC8B (ENSMMMG00000005206) #25	CCDC71 (ENSMMMG00000005226) #26	LAMB2 (ENSMMMG00000005235) #27	USP19 (ENSMMMG00000005310) #28	QARS1 (ENSMMMG00000005497) #29	QRICH1 (ENSMMMG00000005623) #30	IMPDH2 (ENSMMMG00000005658) #32	NDUFAF3 (ENSMMMG00000005669) #31	DALRD3 (ENSMMMG00000005693) #33	WDR6 (ENSMMMG00000005711) #34
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00950000185305	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	426	Traip (ENSDORG00000007406) #7	Uba7 (ENSDORG00000007404) #8	Inka1 (ENSDORG00000007403) #9	Cdhr4 (ENSDORG00000026773) #10	Ip6k1 (ENSDORG00000007515) #11	Gmppb (ENSDORG00000007514) #12	Rnf123 (ENSDORG00000007510) #14	Amigo3 (ENSDORG00000027444) #13	Mst1 (ENSDORG00000007508) #15	Apeh (ENSDORG00000007506) #16	Bsn (ENSDORG00000007502) #17	Dag1 (ENSDORG00000026820) #18	Nicn1 (ENSDORG00000003385) #19	Amt (ENSDORG00000003384) #20	Tcta (ENSDORG00000003383) #21	ENSDORG00000025671 #22	Gpx1 (ENSDORG00000003381)	Usp4 (ENSDORG00000007948) #23	1700102P08Rik (ENSDORG00000007947)	BC048562 (ENSDORG00000024843) #24	Klhdc8b (ENSDORG00000027491) #25	Ccdc71 (ENSDORG00000007398) #26	Lamb2 (ENSDORG00000007397) #27	Usp19 (ENSDORG00000007395) #28	ENSDORG00000007392 #29	ENSDORG00000029720 #29	Qrich1 (ENSDORG00000004362) #30	Impdh2 (ENSDORG00000004361) #32	Ndufaf3 (ENSDORG00000004360) #31	Dalrd3 (ENSDORG00000000367) #33	Wdr6 (ENSDORG00000028656) #34
Kangaroo rat	MODERN SPECIES	504					Eda2r (ENSDORG00000009069)	Pgr15l (ENSDORG00000026395)	Gpr165 (ENSDORG00000029067)	Heph (ENSDORG00000003982)	ENSDORG00000027164	Vsig4 (ENSDORG00000001232)	Msn (ENSDORG00000016668)	ENSDORG00000023763	Las1l (ENSDORG00000001130)	Zc3h12b (ENSDORG00000024832)	Zc4h2 (ENSDORG00000014468)	ENSDORG00000012364 #22	Asb12 (ENSDORG00000029329)	Amer1 (ENSDORG00000027620)	Arhgef9 (ENSDORG00000010147)	Spin4 (ENSDORG00000029504)
Myomorpha	ANCESTRAL SPECIES	26	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00950000185305	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Muroidea	ANCESTRAL SPECIES	27	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00950000185305	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Upper Galilee mountains blind mole rat	MODERN SPECIES	1657	Traip (ENSNGAG00000011282) #7	Uba7 (ENSNGAG00000012558) #8	Inka1 (ENSNGAG00000013600) #9	Cdhr4 (ENSNGAG00000014691) #10	Ip6k1 (ENSNGAG00000017703) #11	Gmppb (ENSNGAG00000018492) #12	Rnf123 (ENSNGAG00000000251) #14	Amigo3 (ENSNGAG00000017398) #13	Mst1 (ENSNGAG00000012975) #15	Apeh (ENSNGAG00000017302) #16	Bsn (ENSNGAG00000021371) #17	Dag1 (ENSNGAG00000002651) #18	Nicn1 (ENSNGAG00000003280) #19	Amt (ENSNGAG00000004673) #20	Tcta (ENSNGAG00000005564) #21	Rhoa (ENSNGAG00000007854) #22	Gpx1 (ENSNGAG00000015216)	Usp4 (ENSNGAG00000016905) #23	1700102P08Rik (ENSNGAG00000006755)	Iho1 (ENSNGAG00000008202)	BC048562 (ENSNGAG00000009611) #24	Klhdc8b (ENSNGAG00000010343) #25	Ccdc71 (ENSNGAG00000010873) #26	Lamb2 (ENSNGAG00000013899) #27	Usp19 (ENSNGAG00000017354) #28	Qars (ENSNGAG00000019897) #29	Qrich1 (ENSNGAG00000000436) #30	Impdh2 (ENSNGAG00000001022) #32	Ndufaf3 (ENSNGAG00000001095) #31	Dalrd3 (ENSNGAG00000002570) #33	Wdr6 (ENSNGAG00000000962) #34
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00950000185305	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Murinae	ANCESTRAL SPECIES	3	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Mus	ANCESTRAL SPECIES	4	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000007696.g #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Mus_B	DUPLICATION
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000007696.g #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b.s #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Mouse	MODERN SPECIES	18	Traip (ENSMUSG00000032586) #7	Uba7 (ENSMUSG00000032596) #8	Inka1 (ENSMUSG00000042106) #9	Cdhr4 (ENSMUSG00000032595) #10	Ip6k1 (ENSMUSG00000032594) #11	Gmppb (ENSMUSG00000070284) #12	Rnf123 (ENSMUSG00000041528) #14	Amigo3 (ENSMUSG00000032593) #13	Mst1 (ENSMUSG00000032591) #15	Apeh (ENSMUSG00000032590) #16	Bsn (ENSMUSG00000032589) #17	Dag1 (ENSMUSG00000039952) #18	Nicn1 (ENSMUSG00000032606) #19	Amt (ENSMUSG00000032607) #20	Tcta (ENSMUSG00000039461) #21	Rhoa (ENSMUSG00000007815) #22	Gpx1 (ENSMUSG00000063856)	Usp4 (ENSMUSG00000032612) #23	1700102P08Rik (ENSMUSG00000032611)	Iho1 (ENSMUSG00000047220)	BC048562 (ENSMUSG00000050641) #24	Klhdc8b (ENSMUSG00000032609) #25	Ccdc71 (ENSMUSG00000049305) #26	Lamb2 (ENSMUSG00000052911) #27	Usp19 (ENSMUSG00000006676) #28	Qars (ENSMUSG00000032604) #29	Qrich1 (ENSMUSG00000006673) #30	Impdh2 (ENSMUSG00000062867) #32	Ndufaf3 (ENSMUSG00000070283) #31	Dalrd3 (ENSMUSG00000019039) #33	Wdr6 (ENSMUSG00000066357) #34
Mus_C	ANCESTRAL SPECIES	23	ENSGT00390000007696.g #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b.s #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Steppe mouse	MODERN SPECIES	2942	Uba7 (ENSMSIG00000023739) #8	Inka1 (ENSMSIG00000023762) #9	Cdhr4 (ENSMSIG00000023775) #10	Ip6k1 (ENSMSIG00000023836) #11	Gmppb (ENSMSIG00000023845) #12	Rnf123 (ENSMSIG00000023874) #14	Amigo3 (ENSMSIG00000024086) #13	Mst1 (ENSMSIG00000024095) #15	Apeh (ENSMSIG00000024125) #16	Bsn (ENSMSIG00000024136) #17	ENSMSIG00000024201	Dag1 (ENSMSIG00000024222) #18	Nicn1 (ENSMSIG00000024241) #19	Amt (ENSMSIG00000024252) #20	Tcta (ENSMSIG00000024280) #21	Rhoa (ENSMSIG00000024290) #22	Gpx1 (ENSMSIG00000024310)	Usp4 (ENSMSIG00000024333) #23	ENSMSIG00000024427	1700102P08Rik (ENSMSIG00000024429)	Iho1 (ENSMSIG00000024437)	BC048562 (ENSMSIG00000024449) #24	Klhdc8b (ENSMSIG00000024460) #25	Ccdc71 (ENSMSIG00000024477) #26	Lamb2 (ENSMSIG00000024492) #27	Usp19 (ENSMSIG00000024529) #28	Qars (ENSMSIG00000024675) #29	Qrich1 (ENSMSIG00000024752) #30	Impdh2 (ENSMSIG00000000088) #32	Ndufaf3 (ENSMSIG00000000202) #31	Dalrd3 (ENSMSIG00000000255) #33
Mus_B	ANCESTRAL SPECIES																	ENSGT00950000182945.b.b.t #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00950000182945.b.b.t #22
Steppe mouse	MODERN SPECIES	2634														Cobll1 (ENSMSIG00000029682)	Grb14 (ENSMSIG00000029702)	ENSMSIG00000029711 #22	ENSMSIG00000029713
Shrew mouse	MODERN SPECIES	1	Uba7 (MGP_PahariEiJ_G0015535) #8	MGP_PahariEiJ_G0015536	Inka1 (MGP_PahariEiJ_G0015537) #9	Cdhr4 (MGP_PahariEiJ_G0015538) #10	Ip6k1 (MGP_PahariEiJ_G0015540) #11	Gmppb (MGP_PahariEiJ_G0015541) #12	Rnf123 (MGP_PahariEiJ_G0015542) #14	Amigo3 (MGP_PahariEiJ_G0015543) #13	Mst1 (MGP_PahariEiJ_G0015544) #15	Apeh (MGP_PahariEiJ_G0015545) #16	Bsn (MGP_PahariEiJ_G0015546) #17	Dag1 (MGP_PahariEiJ_G0015547) #18	Nicn1 (MGP_PahariEiJ_G0015548) #19	Amt (MGP_PahariEiJ_G0015549) #20	MGP_PahariEiJ_G0015550 #21	Rhoa (MGP_PahariEiJ_G0015551) #22	MGP_PahariEiJ_G0015552	Usp4 (MGP_PahariEiJ_G0015553) #23	1700102P08Rik (MGP_PahariEiJ_G0015554)	Iho1 (MGP_PahariEiJ_G0015555)	BC048562 (MGP_PahariEiJ_G0015556) #24	Klhdc8b (MGP_PahariEiJ_G0015557) #25	Ccdc71 (MGP_PahariEiJ_G0015558) #26	MGP_PahariEiJ_G0015559 #27	Usp19 (MGP_PahariEiJ_G0015560) #28	Qars (MGP_PahariEiJ_G0015561) #29	Qrich1 (MGP_PahariEiJ_G0015562) #30	Impdh2 (MGP_PahariEiJ_G0015563) #32	Ndufaf3 (MGP_PahariEiJ_G0015564) #31	Dalrd3 (MGP_PahariEiJ_G0015565) #33	Wdr6 (MGP_PahariEiJ_G0015566) #34
Rat	MODERN SPECIES	18	Actl11 (ENSRNOG00000032642)	Camkv (ENSRNOG00000058938)	Traip (ENSRNOG00000030101) #7	Uba7 (ENSRNOG00000029195) #8	Inka1 (ENSRNOG00000019363) #9	Cdhr4 (ENSRNOG00000061650) #10	Amigo3 (ENSRNOG00000064183) #13	Gmppb (ENSRNOG00000037229) #12	Rnf123 (ENSRNOG00000033378) #14	Mst1 (ENSRNOG00000019680) #15	Apeh (ENSRNOG00000029572) #16	Bsn (ENSRNOG00000030714) #17	Dag1 (ENSRNOG00000019400) #18	Nicn1 (ENSRNOG00000049083) #19	Amt (ENSRNOG00000050214) #20	Rhoa (ENSRNOG00000050519) #22	Gpx1 (ENSRNOG00000048812)	LOC498675 (ENSRNOG00000046155)	Usp4 (ENSRNOG00000054863) #23	Iho1 (ENSRNOG00000048919)	LOC680045 (ENSRNOG00000047468) #24	Klhdc8b (ENSRNOG00000047867) #25	Ccdc71 (ENSRNOG00000048718) #26	Lamb2 (ENSRNOG00000047768) #27	Usp19 (ENSRNOG00000049531) #28	Qars1 (ENSRNOG00000060912) #29	Qrich1 (ENSRNOG00000025071) #30	Impdh2 (ENSRNOG00000031965) #32	Ndufaf3 (ENSRNOG00000020068) #31	Dalrd3 (ENSRNOG00000020159) #33	Wdr6 (ENSRNOG00000020185) #34
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00940000155781 #14	ENSGT00950000183146.b #13	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00950000185305	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Chinese hamster chok1gshd	MODERN SPECIES	284	Traip (ENSCGRG00001014038) #7	Uba7 (ENSCGRG00001018183) #8	Inka1 (ENSCGRG00001015099) #9	Cdhr4 (ENSCGRG00001023124) #10	Ip6k1 (ENSCGRG00001024230) #11	Gmppb (ENSCGRG00001023297) #12	Amigo3 (ENSCGRG00001011127) #13	Rnf123 (ENSCGRG00001003340) #14	Mst1 (ENSCGRG00001013799) #15	Apeh (ENSCGRG00001002191) #16	Bsn (ENSCGRG00001021798) #17	Dag1 (ENSCGRG00001013896) #18	Nicn1 (ENSCGRG00001012420) #19	Amt (ENSCGRG00001000903) #20	Tcta (ENSCGRG00001010040) #21	Rhoa (ENSCGRG00001019741) #22	Gpx1 (ENSCGRG00001017592)	Usp4 (ENSCGRG00001011482) #23	1700102P08Rik (ENSCGRG00001024671)	Iho1 (ENSCGRG00001013280)	BC048562 (ENSCGRG00001021532) #24	Klhdc8b (ENSCGRG00001015630) #25	Ccdc71 (ENSCGRG00001005293) #26	Lamb2 (ENSCGRG00001021919) #27	Usp19 (ENSCGRG00001020926) #28	Qars (ENSCGRG00001021363) #29	Qrich1 (ENSCGRG00001017320) #30	Impdh2 (ENSCGRG00001002016) #32	Ndufaf3 (ENSCGRG00001023494) #31	Dalrd3 (ENSCGRG00001020135) #33	Wdr6 (ENSCGRG00001020890) #34
Cricetidae_B	ANCESTRAL SPECIES	23	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00940000155781 #14	ENSGT00950000183146.b #13	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00950000185305	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	13	Traip (ENSMOCG00000009681) #7	Uba7 (ENSMOCG00000014508) #8	Inka1 (ENSMOCG00000020817) #9	Cdhr4 (ENSMOCG00000004455) #10	Ip6k1 (ENSMOCG00000003920) #11	Gmppb (ENSMOCG00000001579) #12	Rnf123 (ENSMOCG00000012846) #14	Amigo3 (ENSMOCG00000008068) #13	Mst1 (ENSMOCG00000006858) #15	Apeh (ENSMOCG00000016042) #16	Bsn (ENSMOCG00000009384) #17	Dag1 (ENSMOCG00000002328) #18	Nicn1 (ENSMOCG00000022631) #19	Amt (ENSMOCG00000009959) #20	Tcta (ENSMOCG00000012055) #21	Rhoa (ENSMOCG00000015603) #22	Gpx1 (ENSMOCG00000017016)	Usp4 (ENSMOCG00000022148) #23	1700102P08Rik (ENSMOCG00000010012)	Iho1 (ENSMOCG00000018017)	BC048562 (ENSMOCG00000019645) #24	Klhdc8b (ENSMOCG00000020213) #25	Ccdc71 (ENSMOCG00000003307) #26	Lamb2 (ENSMOCG00000020853) #27	ENSMOCG00000015175	Usp19 (ENSMOCG00000017005) #28	Qars (ENSMOCG00000019363) #29	Qrich1 (ENSMOCG00000005427) #30	Impdh2 (ENSMOCG00000012803) #32	ENSMOCG00000018646 #31	Dalrd3 (ENSMOCG00000000771) #33
Prairie vole	MODERN SPECIES	84	Rpn1 (ENSMOCG00000019555)	Gata2 (ENSMOCG00000010158)	Dnajb8 (ENSMOCG00000009527)	ENSMOCG00000013516	Eefsec (ENSMOCG00000017748)	Ruvbl1 (ENSMOCG00000020711)	Sec61a1 (ENSMOCG00000012823)	Kbtbd12 (ENSMOCG00000010634)	Mgll (ENSMOCG00000000279)	Abtb1 (ENSMOCG00000001980)	Podxl2 (ENSMOCG00000012699)	Mcm2 (ENSMOCG00000002693)	Tpra1 (ENSMOCG00000015000)	Plxna1 (ENSMOCG00000007977)	Chchd6 (ENSMOCG00000014679)	ENSMOCG00000002972 #22	Txnrd3 (ENSMOCG00000012893)	ENSMOCG00000019875	ENSMOCG00000018983	ENSMOCG00000014528	BC048671 (ENSMOCG00000016274)	Chst13 (ENSMOCG00000002222)	Uroc1 (ENSMOCG00000004244)	Zxdc (ENSMOCG00000017021)	Cfap100 (ENSMOCG00000021845)	Klf15 (ENSMOCG00000022079)	Aldh1l1 (ENSMOCG00000003909)	Slc41a3 (ENSMOCG00000017752)	Iqsec1 (ENSMOCG00000000442)	Nup210 (ENSMOCG00000009601)	Hdac11 (ENSMOCG00000000173)
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	20	Traip (ENSPEMG00000006857) #7	Uba7 (ENSPEMG00000011355) #8	Inka1 (ENSPEMG00000001909) #9	Cdhr4 (ENSPEMG00000006687) #10	Ip6k1 (ENSPEMG00000029245) #11	Gmppb (ENSPEMG00000008363) #12	Rnf123 (ENSPEMG00000010562) #14	Amigo3 (ENSPEMG00000005060) #13	Mst1 (ENSPEMG00000010324) #15	Apeh (ENSPEMG00000006847) #16	Bsn (ENSPEMG00000004268) #17	Dag1 (ENSPEMG00000027318) #18	Nicn1 (ENSPEMG00000010264) #19	Amt (ENSPEMG00000001896) #20	Tcta (ENSPEMG00000025839) #21	Rhoa (ENSPEMG00000020093) #22	Gpx1 (ENSPEMG00000013554)	Usp4 (ENSPEMG00000010920) #23	1700102P08Rik (ENSPEMG00000014836)	Iho1 (ENSPEMG00000013425)	BC048562 (ENSPEMG00000008132) #24	Klhdc8b (ENSPEMG00000000378) #25	Ccdc71 (ENSPEMG00000029170) #26	Lamb2 (ENSPEMG00000002529) #27	Usp19 (ENSPEMG00000024178) #28	Qars (ENSPEMG00000017730) #29	Qrich1 (ENSPEMG00000001882) #30	Impdh2 (ENSPEMG00000005350) #32	Ndufaf3 (ENSPEMG00000017882) #31	Wdr6 (ENSPEMG00000023545) #34	P4htm (ENSPEMG00000023451) #35
Northern American deer mouse	MODERN SPECIES	2	Bcl2 (ENSPEMG00000023121)	Kdsr (ENSPEMG00000031226)	Vps4b (ENSPEMG00000021703)	Serpinb5 (ENSPEMG00000017189)	Serpinb12 (ENSPEMG00000008298)	Serpinb13 (ENSPEMG00000023235)	ENSPEMG00000023589	Serpinb11 (ENSPEMG00000010881)	Serpinb7 (ENSPEMG00000023263)	Serpinb2 (ENSPEMG00000021421)	Serpinb10 (ENSPEMG00000024020)	Serpinb8 (ENSPEMG00000027334)	ENSPEMG00000011900	ENSPEMG00000007977	ENSPEMG00000025253	ENSPEMG00000026890 #22	Cdh7 (ENSPEMG00000011724)	ENSPEMG00000027954	ENSPEMG00000001863	ENSPEMG00000005004	Cdh19 (ENSPEMG00000023161)	ENSPEMG00000027925	Dsel (ENSPEMG00000019394)	ENSPEMG00000030045	ENSPEMG00000028525	ENSPEMG00000027032	ENSPEMG00000030618	Nifk (ENSPEMG00000023356)	Tsn (ENSPEMG00000027108)	ENSPEMG00000028884	ENSPEMG00000011134
Lagomorpha	ANCESTRAL SPECIES	11	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Pika	MODERN SPECIES	3496													ENSOPRG00000009686 #19	AMT (ENSOPRG00000009659) #20	TCTA (ENSOPRG00000009649) #21	RHOA (ENSOPRG00000009638) #22	GPX1 (ENSOPRG00000009632)	USP4 (ENSOPRG00000009591) #23	C3orf62 (ENSOPRG00000009584)	ENSOPRG00000009550	ENSOPRG00000009534 #25
Rabbit	MODERN SPECIES	20	INKA1 (ENSOCUG00000006590) #9	CDHR4 (ENSOCUG00000009174) #10	RPL28 (ENSOCUG00000027112)	IP6K1 (ENSOCUG00000005017) #11	GMPPB (ENSOCUG00000005015) #12	AMIGO3 (ENSOCUG00000022672) #13	ENSOCUG00000004999 #14	ENSOCUG00000032568 #14	ENSOCUG00000030741	MST1 (ENSOCUG00000004997) #15	APEH (ENSOCUG00000004990) #16	ENSOCUG00000030238 ##17	DAG1 (ENSOCUG00000003439) #18	AMT (ENSOCUG00000013310) #20	TCTA (ENSOCUG00000013319) #21	RHOA (ENSOCUG00000013323) #22	ENSOCUG00000005938	USP4 (ENSOCUG00000005926) #23	C3orf62 (ENSOCUG00000032815)	IHO1 (ENSOCUG00000005910)	C3orf84 (ENSOCUG00000022446) #24	KLHDC8B (ENSOCUG00000017588) #25	CCDC71 (ENSOCUG00000017593) #26	LAMB2 (ENSOCUG00000005101) #27	USP19 (ENSOCUG00000005092) #28	QARS1 (ENSOCUG00000005082) #29	QRICH1 (ENSOCUG00000017728) #30	IMPDH2 (ENSOCUG00000017724) #32	NDUFAF3 (ENSOCUG00000017721) #31	DALRD3 (ENSOCUG00000017715) #33	WDR6 (ENSOCUG00000017712) #34
Tree shrew	MODERN SPECIES	4981																RHOA (ENSTBEG00000002417) #22	GPX1 (ENSTBEG00000001653)	USP4 (ENSTBEG00000008478) #23	C3orf62 (ENSTBEG00000007849)	ENSTBEG00000007701	IHO1 (ENSTBEG00000007145)	KLHDC8B (ENSTBEG00000006660) #25	LAMB2 (ENSTBEG00000004366) #27
Primates	ANCESTRAL SPECIES	1	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00910000147297	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00910000147297	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.b #19	ENSGT00910000147297	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000164003	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00910000146976	ENSGT00940000157726 #32
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000164381	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00910000146976	ENSGT00940000157726 #32	ENSGT00390000018312 #31
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000164381	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00910000146976	ENSGT00940000157726 #32	ENSGT00390000018312 #31
Vervet Monkey	MODERN SPECIES	14	CAMKV (ENSCSAG00000014481)	TRAIP (ENSCSAG00000014525) #7	UBA7 (ENSCSAG00000014567) #8	INKA1 (ENSCSAG00000014577) #9	IP6K1 (ENSCSAG00000014586) #11	GMPPB (ENSCSAG00000014596) #12	AMIGO3 (ENSCSAG00000018784) #13	RNF123 (ENSCSAG00000014794) #14	MST1 (ENSCSAG00000014934) #15	APEH (ENSCSAG00000014962) #16	BSN (ENSCSAG00000014973) #17	DAG1 (ENSCSAG00000014979) #18	NICN1 (ENSCSAG00000014988) #19	AMT (ENSCSAG00000015048) #20	TCTA (ENSCSAG00000015067) #21	RHOA (ENSCSAG00000015074) #22	GPX1 (ENSCSAG00000015079)	USP4 (ENSCSAG00000015089) #23	C3orf62 (ENSCSAG00000015100)	IHO1 (ENSCSAG00000015114)	C3orf84 (ENSCSAG00000015128) #24	KLHDC8B (ENSCSAG00000015133) #25	LAMB2 (ENSCSAG00000015160) #27	USP19 (ENSCSAG00000015179) #28	QARS1 (ENSCSAG00000015198) #29	QRICH1 (ENSCSAG00000015224) #30	IMPDH2 (ENSCSAG00000015243) #32	NDUFAF3 (ENSCSAG00000015235) #31	DALRD3 (ENSCSAG00000015253) #33	WDR6 (ENSCSAG00000015270) #34	P4HTM (ENSCSAG00000015286) #35
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000164381	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00910000146976	ENSGT00940000157726 #32	ENSGT00390000018312 #31
Macaca	ANCESTRAL SPECIES	5	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000164381	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00940000154612.n.gb	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00910000146976	ENSGT00940000157726 #32
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000164381	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00940000154612.n.gb	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00910000146976
Rhesus	MODERN SPECIES	11	TRAIP (ENSMMUG00000016476) #7	UBA7 (ENSMMUG00000020980) #8	INKA1 (ENSMMUG00000020979) #9	ENSMMUG00000031794	IP6K1 (ENSMMUG00000014589) #11	GMPPB (ENSMMUG00000014584) #12	AMIGO3 (ENSMMUG00000014582) #13	RNF123 (ENSMMUG00000014564) #14	MST1 (ENSMMUG00000057113) #15	APEH (ENSMMUG00000014540) #16	BSN (ENSMMUG00000014537) #17	DAG1 (ENSMMUG00000004683) #18	NICN1 (ENSMMUG00000031780) #19	AMT (ENSMMUG00000005452) #20	TCTA (ENSMMUG00000058903) #21	RHOA (ENSMMUG00000047476) #22	GPX1 (ENSMMUG00000012963)	C2H3orf62 (ENSMMUG00000049541)	USP4 (ENSMMUG00000000822) #23	IHO1 (ENSMMUG00000053526)	ENSMMUG00000062159	C2H3orf84 (ENSMMUG00000046787) #24	KLHDC8B (ENSMMUG00000002833) #25	CCDC71 (ENSMMUG00000002836) #26	LAMB2 (ENSMMUG00000002952) #27	USP19 (ENSMMUG00000002948) #28	QARS1 (ENSMMUG00000002943) #29	QRICH1 (ENSMMUG00000005660) #30	IMPDH2 (ENSMMUG00000005656) #32	NDUFAF3 (ENSMMUG00000058322) #31	DALRD3 (ENSMMUG00000005652) #33
Crab-eating macaque	MODERN SPECIES	11	CAMKV (ENSMFAG00000030868)	TRAIP (ENSMFAG00000033393) #7	UBA7 (ENSMFAG00000043227) #8	INKA1 (ENSMFAG00000036646) #9	ENSMFAG00000002516	IP6K1 (ENSMFAG00000040757) #11	AMIGO3 (ENSMFAG00000029250) #13	RNF123 (ENSMFAG00000028385) #14	MST1 (ENSMFAG00000003952) #15	APEH (ENSMFAG00000043600) #16	BSN (ENSMFAG00000042413) #17	DAG1 (ENSMFAG00000044374) #18	NICN1 (ENSMFAG00000044679) #19	AMT (ENSMFAG00000003688) #20	TCTA (ENSMFAG00000003146) #21	RHOA (ENSMFAG00000036093) #22	GPX1 (ENSMFAG00000035887)	C3orf62 (ENSMFAG00000053457)	USP4 (ENSMFAG00000043326) #23	IHO1 (ENSMFAG00000043646)	ENSMFAG00000058702	C3orf84 (ENSMFAG00000053517) #24	KLHDC8B (ENSMFAG00000044788) #25	CCDC71 (ENSMFAG00000056130) #26	LAMB2 (ENSMFAG00000030537) #27	USP19 (ENSMFAG00000040355) #28	QARS1 (ENSMFAG00000033478) #29	QRICH1 (ENSMFAG00000030312) #30	IMPDH (ENSMFAG00000044947) #32	ENSMFAG00000061406	NDUFAF3 (ENSMFAG00000046307) #31
Pig-tailed macaque	MODERN SPECIES	563	TRAIP (ENSMNEG00000008012) #7	UBA7 (ENSMNEG00000035088) #8	INKA1 (ENSMNEG00000042622) #9	ENSMNEG00000031670	IP6K1 (ENSMNEG00000011583) #11	GMPPB (ENSMNEG00000040699) #12	AMIGO3 (ENSMNEG00000027501) #13	RNF123 (ENSMNEG00000030612) #14	MST1 (ENSMNEG00000040779) #15	APEH (ENSMNEG00000042039) #16	BSN (ENSMNEG00000044956) #17	DAG1 (ENSMNEG00000002150) #18	NICN1 (ENSMNEG00000028099) #19	AMT (ENSMNEG00000044694) #20	TCTA (ENSMNEG00000029672) #21	RHOA (ENSMNEG00000042186) #22	GPX1 (ENSMNEG00000043723)	USP4 (ENSMNEG00000036652) #23	C3orf62 (ENSMNEG00000041595)	ENSMNEG00000030741	IHO1 (ENSMNEG00000041960)	ENSMNEG00000040259	C3orf84 (ENSMNEG00000040997) #24	KLHDC8B (ENSMNEG00000033867) #25	LAMB2 (ENSMNEG00000044894) #27	USP19 (ENSMNEG00000033317) #28	QARS1 (ENSMNEG00000035096) #29	QRICH1 (ENSMNEG00000029906) #30	ENSMNEG00000014164	IMPDH2 (ENSMNEG00000036421) #32	NDUFAF3 (ENSMNEG00000033547) #31
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000164381	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00910000146976	ENSGT00940000157726 #32	ENSGT00390000018312 #31
Olive baboon	MODERN SPECIES	11	RNF123 (ENSPANG00000000876) #14	AMIGO3 (ENSPANG00000004369) #13	GMPPB (ENSPANG00000006142) #12	IP6K1 (ENSPANG00000009897) #11	ENSPANG00000031427	INKA1 (ENSPANG00000018298) #9	UBA7 (ENSPANG00000020175) #8	TRAIP (ENSPANG00000022481) #7	CAMKV (ENSPANG00000022786)	ENSPANG00000048096	MST1R (ENSPANG00000011245)	MON1A (ENSPANG00000012435)	NICN1 (ENSPANG00000019720) #19	AMT (ENSPANG00000015012) #20	TCTA (ENSPANG00000018886) #21	RHOA (ENSPANG00000031333) #22	RBM5 (ENSPANG00000018507)	SEMA3F (ENSPANG00000012481)	GNAT1 (ENSPANG00000012482)	SLC38A3 (ENSPANG00000014197)	GNAI2 (ENSPANG00000023235)	SEMA3B (ENSPANG00000015980)	LSMEM2 (ENSPANG00000020951)	IFRD2 (ENSPANG00000009082)	HYAL3 (ENSPANG00000019037)	HYAL2 (ENSPANG00000000779)	TUSC2 (ENSPANG00000006145)	RASSF1 (ENSPANG00000016900)	ZMYND10 (ENSPANG00000012439)	NPRL2 (ENSPANG00000009525)	CYB561D2 (ENSPANG00000008258)
Cercopithecinae_d	ANCESTRAL SPECIES	44	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000164381	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00910000146976	ENSGT00940000157726 #32	ENSGT00390000018312 #31
Sooty mangabey	MODERN SPECIES	415	TRAIP (ENSCATG00000029131) #7	UBA7 (ENSCATG00000011919) #8	INKA1 (ENSCATG00000033705) #9	ENSCATG00000032750	IP6K1 (ENSCATG00000001155) #11	GMPPB (ENSCATG00000038201) #12	AMIGO3 (ENSCATG00000012805) #13	RNF123 (ENSCATG00000033566) #14	MST1 (ENSCATG00000029698) #15	APEH (ENSCATG00000031753) #16	BSN (ENSCATG00000013946) #17	DAG1 (ENSCATG00000034325) #18	NICN1 (ENSCATG00000032696) #19	AMT (ENSCATG00000040549) #20	TCTA (ENSCATG00000029652) #21	RHOA (ENSCATG00000018066) #22	GPX1 (ENSCATG00000012563)	USP4 (ENSCATG00000038050) #23	C3orf62 (ENSCATG00000038289)	ENSCATG00000040412	IHO1 (ENSCATG00000030087)	C3orf84 (ENSCATG00000044627) #24	KLHDC8B (ENSCATG00000038940) #25	CCDC71 (ENSCATG00000039714) #26	LAMB2 (ENSCATG00000045276) #27	USP19 (ENSCATG00000041103) #28	QARS1 (ENSCATG00000037275) #29	QRICH1 (ENSCATG00000030540) #30	ENSCATG00000040928	IMPDH2 (ENSCATG00000030723) #32	NDUFAF3 (ENSCATG00000039806) #31
Drill	MODERN SPECIES	806	TRAIP (ENSMLEG00000029913) #7	UBA7 (ENSMLEG00000037406) #8	INKA1 (ENSMLEG00000043314) #9	ENSMLEG00000039803	IP6K1 (ENSMLEG00000034530) #11	GMPPB (ENSMLEG00000028013) #12	RNF123 (ENSMLEG00000037781) #14	AMIGO3 (ENSMLEG00000025213) #13	MST1 (ENSMLEG00000030117) #15	APEH (ENSMLEG00000035200) #16	BSN (ENSMLEG00000038838) #17	DAG1 (ENSMLEG00000034072) #18	NICN1 (ENSMLEG00000016079) #19	AMT (ENSMLEG00000034972) #20	TCTA (ENSMLEG00000038364) #21	RHOA (ENSMLEG00000038343) #22	GPX1 (ENSMLEG00000037976)	USP4 (ENSMLEG00000041312) #23	C3orf62 (ENSMLEG00000044233)	ENSMLEG00000006991	IHO1 (ENSMLEG00000043657)	C3orf84 (ENSMLEG00000037676) #24	KLHDC8B (ENSMLEG00000040348) #25	LAMB2 (ENSMLEG00000037084) #27	USP19 (ENSMLEG00000026259) #28	QARS1 (ENSMLEG00000042334) #29	QRICH1 (ENSMLEG00000030523) #30	IMPDH2 (ENSMLEG00000038550) #32	NDUFAF3 (ENSMLEG00000038523) #31	DALRD3 (ENSMLEG00000040883) #33	WDR6 (ENSMLEG00000037052) #34
Rhinopithecus	ANCESTRAL SPECIES	41	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000164381	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150.c	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Black snub-nosed monkey	MODERN SPECIES	238	INKA1 (ENSRBIG00000029564) #9	ENSRBIG00000032969	IP6K1 (ENSRBIG00000032997) #11	GMPPB (ENSRBIG00000044861) #12	RNF123 (ENSRBIG00000033007) #14	AMIGO3 (ENSRBIG00000035833) #13	MST1 (ENSRBIG00000042205) #15	APEH (ENSRBIG00000038835) #16	BSN (ENSRBIG00000031944) #17	ENSRBIG00000027212	DAG1 (ENSRBIG00000030053) #18	NICN1 (ENSRBIG00000027144) #19	AMT (ENSRBIG00000041194) #20	TCTA (ENSRBIG00000033807) #21	ENSRBIG00000005780	ENSRBIG00000044204 #22	ENSRBIG00000038215	USP4 (ENSRBIG00000038187) #23	C3orf62 (ENSRBIG00000037968)	ENSRBIG00000033062	IHO1 (ENSRBIG00000038941)	C3orf84 (ENSRBIG00000033269) #24	KLHDC8B (ENSRBIG00000044493) #25	LAMB2 (ENSRBIG00000035222) #27	USP19 (ENSRBIG00000034712) #28	QARS1 (ENSRBIG00000030327) #29	QRICH1 (ENSRBIG00000020566) #30	IMPDH2 (ENSRBIG00000036996) #32	ENSRBIG00000035262	NDUFAF3 (ENSRBIG00000038471) #31	DALRD3 (ENSRBIG00000042882) #33
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	656	TRAIP (ENSRROG00000040949) #7	UBA7 (ENSRROG00000029272) #8	INKA1 (ENSRROG00000032748) #9	ENSRROG00000038826	IP6K1 (ENSRROG00000039202) #11	RNF123 (ENSRROG00000004162) #14	GMPPB (ENSRROG00000011994) #12	AMIGO3 (ENSRROG00000019923) #13	MST1 (ENSRROG00000027621) #15	APEH (ENSRROG00000003710) #16	BSN (ENSRROG00000032997) #17	DAG1 (ENSRROG00000042606) #18	NICN1 (ENSRROG00000035488) #19	AMT (ENSRROG00000031575) #20	TCTA (ENSRROG00000038446) #21	RHOA (ENSRROG00000031894) #22	ENSRROG00000031817	USP4 (ENSRROG00000037639) #23	C3orf62 (ENSRROG00000025217)	ENSRROG00000029834	IHO1 (ENSRROG00000039947)	C3orf84 (ENSRROG00000044252) #24	KLHDC8B (ENSRROG00000031709) #25	LAMB2 (ENSRROG00000036637) #27	USP19 (ENSRROG00000034752) #28	QARS1 (ENSRROG00000034983) #29	QRICH1 (ENSRROG00000044579) #30	IMPDH2 (ENSRROG00000004338) #32	NDUFAF3 (ENSRROG00000034732) #31	ENSRROG00000038492	DALRD3 (ENSRROG00000038168) #33
Golden snub-nosed monkey	MODERN SPECIES	2510	AMPD3 (ENSRROG00000039180)	ADM (ENSRROG00000040077)	SBF2 (ENSRROG00000002122)	ENSRROG00000001345	ENSRROG00000035836	SWAP70 (ENSRROG00000031545)	WEE1 (ENSRROG00000032466)	ZNF143 (ENSRROG00000026574)	IPO7 (ENSRROG00000031816)	TMEM41B (ENSRROG00000023773)	DENND5A (ENSRROG00000040547)	SCUBE2 (ENSRROG00000039239)	NRIP3 (ENSRROG00000044194)	ENSRROG00000044300	ENSRROG00000040205	ENSRROG00000039331 #22	C11orf16 (ENSRROG00000043530)	AKIP1 (ENSRROG00000025705)	ENSRROG00000000337	DENND2B (ENSRROG00000032083)	ENSRROG00000035415	ENSRROG00000032737
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150.b	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00910000146976	ENSGT00940000157726 #32	ENSGT00390000018312 #31
Hominidae	ANCESTRAL SPECIES	2	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150.b	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00910000146976	ENSGT00940000157726 #32	ENSGT00390000018312 #31
Orangutan	MODERN SPECIES	16	TRAIP (ENSPPYG00000013859) #7	INKA1 (ENSPPYG00000035798) #9	CDHR4 (ENSPPYG00000013862) #10	IP6K1 (ENSPPYG00000039264) #11	ENSPPYG00000034428	GMPPB (ENSPPYG00000013864) #12	RNF123 (ENSPPYG00000013865) #14	AMIGO3 (ENSPPYG00000013866) #13	MST1 (ENSPPYG00000013867) #15	APEH (ENSPPYG00000013868) #16	BSN (ENSPPYG00000013869) #17	DAG1 (ENSPPYG00000013870) #18	AMT (ENSPPYG00000013871) #20	NICN1 (ENSPPYG00000040178) #19	TCTA (ENSPPYG00000013872)	RHOA (ENSPPYG00000013873) #22	GPX1 (ENSPPYG00000025896)	USP4 (ENSPPYG00000013874) #23	C3orf62 (ENSPPYG00000040660)	IHO1 (ENSPPYG00000013877)	C3orf84 (ENSPPYG00000032258) #24	KLHDC8B (ENSPPYG00000013878) #25	CCDC71 (ENSPPYG00000013879) #26	USP19 (ENSPPYG00000013881) #28	QARS1 (ENSPPYG00000013882) #29	QRICH1 (ENSPPYG00000013883) #30	IMPDH2 (ENSPPYG00000013884) #32	NDUFAF3 (ENSPPYG00000013885) #31	DALRD3 (ENSPPYG00000013886) #33	WDR6 (ENSPPYG00000013887) #34	P4HTM (ENSPPYG00000036915) #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150.b.a.a	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00910000146976	ENSGT00940000157726 #32	ENSGT00390000018312 #31
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150.b.a.a	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00910000146976	ENSGT00940000157726 #32	ENSGT00390000018312 #31
Human	MODERN SPECIES	15	UBA7 (ENSG00000182179) #8	INKA1 (ENSG00000185614) #9	CDHR4 (ENSG00000187492) #10	IP6K1 (ENSG00000176095) #11	GMPPB (ENSG00000173540) #12	AMIGO3 (ENSG00000176020) #13	RNF123 (ENSG00000164068) #14	MST1 (ENSG00000173531) #15	APEH (ENSG00000164062) #16	BSN (ENSG00000164061) #17	DAG1 (ENSG00000173402) #18	NICN1 (ENSG00000145029) #19	AMT (ENSG00000145020) #20	ENSG00000283189	TCTA (ENSG00000145022) #21	RHOA (ENSG00000067560) #22	ENSG00000290318	GPX1 (ENSG00000233276)	USP4 (ENSG00000114316) #23	C3orf62 (ENSG00000188315)	IHO1 (ENSG00000173421)	C3orf84 (ENSG00000236980) #24	KLHDC8B (ENSG00000185909) #25	CCDC71 (ENSG00000177352) #26	LAMB2 (ENSG00000172037) #27	USP19 (ENSG00000172046) #28	QARS1 (ENSG00000172053) #29	QRICH1 (ENSG00000198218) #30	ENSG00000290315	IMPDH2 (ENSG00000178035) #32	NDUFAF3 (ENSG00000178057) #31
Pan	ANCESTRAL SPECIES	2	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00980000199418	ENSGT00950000182945.b.b #22	ENSGT00940000156150.b.a.a	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00910000146976	ENSGT00940000157726 #32	ENSGT00390000018312 #31
Chimpanzee	MODERN SPECIES	16	TRAIP (ENSPTRG00000014939) #7	UBA7 (ENSPTRG00000014936) #8	INKA1 (ENSPTRG00000014935) #9	CDHR4 (ENSPTRG00000042519) #10	IP6K1 (ENSPTRG00000014933) #11	GMPPB (ENSPTRG00000014932) #12	AMIGO3 (ENSPTRG00000014931) #13	RNF123 (ENSPTRG00000050058) #14	MST1 (ENSPTRG00000014929) #15	APEH (ENSPTRG00000014928) #16	BSN (ENSPTRG00000014927) #17	DAG1 (ENSPTRG00000014926) #18	NICN1 (ENSPTRG00000032494) #19	AMT (ENSPTRG00000014924) #20	TCTA (ENSPTRG00000014923)	RHOA (ENSPTRG00000014922) #22	GPX1 (ENSPTRG00000014921)	USP4 (ENSPTRG00000014920) #23	C3H3orf62 (ENSPTRG00000038744)	ENSPTRG00000038743	IHO1 (ENSPTRG00000014915)	C3H3orf84 (ENSPTRG00000050096) #24	KLHDC8B (ENSPTRG00000014914) #25	CCDC71 (ENSPTRG00000014913) #26	LAMB2 (ENSPTRG00000014912) #27	USP19 (ENSPTRG00000014911) #28	QARS1 (ENSPTRG00000014910) #29	QRICH1 (ENSPTRG00000023070) #30	ENSPTRG00000052442	IMPDH2 (ENSPTRG00000014908) #32	NDUFAF3 (ENSPTRG00000014907) #31
Bonobo	MODERN SPECIES	16	CAMKV (ENSPPAG00000032674)	TRAIP (ENSPPAG00000036459) #7	UBA7 (ENSPPAG00000029340) #8	INKA1 (ENSPPAG00000031734) #9	CDHR4 (ENSPPAG00000031249) #10	IP6K1 (ENSPPAG00000016833) #11	GMPPB (ENSPPAG00000032705) #12	AMIGO3 (ENSPPAG00000008606) #13	RNF123 (ENSPPAG00000033919) #14	APEH (ENSPPAG00000041077) #16	BSN (ENSPPAG00000037774) #17	DAG1 (ENSPPAG00000035837) #18	NICN1 (ENSPPAG00000029365) #19	AMT (ENSPPAG00000038969) #20	ENSPPAG00000041505	ENSPPAG00000031493 #22	ENSPPAG00000041840	USP4 (ENSPPAG00000030591) #23	C3orf62 (ENSPPAG00000034256)	ENSPPAG00000028818	IHO1 (ENSPPAG00000041728)	C3orf84 (ENSPPAG00000028447) #24	KLHDC8B (ENSPPAG00000043715) #25	LAMB2 (ENSPPAG00000034500) #27	USP19 (ENSPPAG00000042808) #28	QRICH1 (ENSPPAG00000028104) #30	ENSPPAG00000040709	IMPDH2 (ENSPPAG00000028755) #32	NDUFAF3 (ENSPPAG00000037616) #31	DALRD3 (ENSPPAG00000037268) #33	WDR6 (ENSPPAG00000043035) #34
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	19	TRAIP (ENSNLEG00000006911) #7	UBA7 (ENSNLEG00000006908) #8	INKA1 (ENSNLEG00000006906) #9	CDHR4 (ENSNLEG00000006902) #10	IP6K1 (ENSNLEG00000006900) #11	GMPPB (ENSNLEG00000006894) #12	RNF123 (ENSNLEG00000006875) #14	AMIGO3 (ENSNLEG00000018539) #13	MST1 (ENSNLEG00000006866) #15	APEH (ENSNLEG00000006859) #16	BSN (ENSNLEG00000006857) #17	DAG1 (ENSNLEG00000006853) #18	NICN1 (ENSNLEG00000006851) #19	AMT (ENSNLEG00000029101) #20	ENSNLEG00000006843	RHOA (ENSNLEG00000006839) #22	ENSNLEG00000028108	USP4 (ENSNLEG00000006829) #23	C3orf62 (ENSNLEG00000006828)	ENSNLEG00000006827	IHO1 (ENSNLEG00000006825)	C3orf84 (ENSNLEG00000006823) #24	KLHDC8B (ENSNLEG00000006819) #25	LAMB2 (ENSNLEG00000006812) #27	USP19 (ENSNLEG00000006789) #28	ENSNLEG00000006772 #29	QRICH1 (ENSNLEG00000006752) #30	IMPDH2 (ENSNLEG00000006743) #32	ENSNLEG00000027818	NDUFAF3 (ENSNLEG00000006739) #31	ENSNLEG00000006730 #33
Gibbon	MODERN SPECIES	18	KHDC1L (ENSNLEG00000001179)	ENSNLEG00000001177	KCNQ5 (ENSNLEG00000001127)	ENSNLEG00000031152	ENSNLEG00000028596	ENSNLEG00000033063	RIMS1 (ENSNLEG00000001000)	ENSNLEG00000031051	OGFRL1 (ENSNLEG00000029017)	B3GAT2 (ENSNLEG00000000971)	SMAP1 (ENSNLEG00000000922)	SDHAF4 (ENSNLEG00000036240)	FAM135A (ENSNLEG00000000844)	COL9A1 (ENSNLEG00000000726)	COL19A1 (ENSNLEG00000000613)	ENSNLEG00000034891 #22	LMBRD1 (ENSNLEG00000000524)	ADGRB3 (ENSNLEG00000000505)	ENSNLEG00000034181	ENSNLEG00000034833	ENSNLEG00000035428	ENSNLEG00000031911	EYS (ENSNLEG00000028360)	PHF3 (ENSNLEG00000026859)	PTP4A1 (ENSNLEG00000029820)	ENSNLEG00000028056	LGSN (ENSNLEG00000027917)	ENSNLEG00000000425	ENSNLEG00000033374	ENSNLEG00000031720	ENSNLEG00000028574
Platyrrhini	ANCESTRAL SPECIES	18	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00940000153783.b.b.c.a.a.a.k	ENSGT00390000008429 #18	ENSGT00390000001505.b #19	ENSGT00910000147297	ENSGT00390000001505.a.b #19	ENSGT00390000001505.a.a #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150.f	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972.e #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Cebidae	ANCESTRAL SPECIES	14	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00940000153783.b.b.c.b.d.a	ENSGT00390000008429 #18	ENSGT00390000001505.b #19	ENSGT00910000147297	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150.f.b	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972.e #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Marmoset	DUPLICATION
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	6	TRAIP (ENSCJAG00000004415) #7	UBA7 (ENSCJAG00000004368) #8	INKA1 (ENSCJAG00000004364) #9	CDHR4 (ENSCJAG00000004354) #10	IP6K1 (ENSCJAG00000004332) #11	GMPPB (ENSCJAG00000004306) #12	AMIGO3 (ENSCJAG00000062803) #13	MST1 (ENSCJAG00000004098) #15	RNF123 (ENSCJAG00000004025) #14	ENSCJAG00000065044	BSN (ENSCJAG00000004003) #17	DAG1 (ENSCJAG00000065054) #18	NICN1 (ENSCJAG00000003992) #19	AMT (ENSCJAG00000003962) #20	TCTA (ENSCJAG00000070394) #21	ENSCJAG00000013657 #22	Gpx-1 (ENSCJAG00000070831)	USP4 (ENSCJAG00000003788) #23	C3orf62 (ENSCJAG00000003785)	IHO1 (ENSCJAG00000003765)	C3orf84 (ENSCJAG00000038262) #24	KLHDC8B (ENSCJAG00000003745) #25	CCDC71 (ENSCJAG00000003741) #26	LAMB2 (ENSCJAG00000003674) #27	USP19 (ENSCJAG00000003571) #28	QARS1 (ENSCJAG00000003457) #29	QRICH1 (ENSCJAG00000003440) #30	IMPDH2 (ENSCJAG00000003400) #32	NDUFAF3 (ENSCJAG00000003387) #31	DALRD3 (ENSCJAG00000003370) #33	WDR6 (ENSCJAG00000003354) #34
Marmoset	MODERN SPECIES	12	IST1 (ENSCJAG00000015051)	PKD1L3 (ENSCJAG00000015072)	DHODH (ENSCJAG00000015085)	ENSCJAG00000015091	TXNL4B (ENSCJAG00000015100)	DHX38 (ENSCJAG00000015103)	PMFBP1 (ENSCJAG00000031829)	ENSCJAG00000071699	ZFHX3 (ENSCJAG00000043080)	ENSCJAG00000047178	PSMD7 (ENSCJAG00000015129)	WWP2 (ENSCJAG00000015149)	NOB1 (ENSCJAG00000015230)	NQO1 (ENSCJAG00000045541)	ENSCJAG00000070329	ENSCJAG00000062741 #22	NFAT5 (ENSCJAG00000015262)	CYB5B (ENSCJAG00000067936)	TERF2 (ENSCJAG00000015339)	TMED6 (ENSCJAG00000015355)	NIP7 (ENSCJAG00000015364)	COG8 (ENSCJAG00000015376)	PDF (ENSCJAG00000037252)	VPS4A (ENSCJAG00000015386)	SNTB2 (ENSCJAG00000015408)	UTP4 (ENSCJAG00000015411)	CHTF8 (ENSCJAG00000083401)	HAS3 (ENSCJAG00000015469)	ENSCJAG00000022064	TANGO6 (ENSCJAG00000015482)	CDH1 (ENSCJAG00000015504)
Marmoset	MODERN SPECIES		PRXL2C (ENSCJAG00000076685)	ZNF484 (ENSCJAG00000005536)	ENSCJAG00000084670	GAS1 (ENSCJAG00000062210)	ENSCJAG00000074564	DAPK1 (ENSCJAG00000005569)	ENSCJAG00000005635	ENSCJAG00000072229	ENSCJAG00000051243	DIRAS2 (ENSCJAG00000039042)	ENSCJAG00000062354	SYK (ENSCJAG00000005666)	ENSCJAG00000005695	NFIL3 (ENSCJAG00000005728)	ENSCJAG00000073981	ENSCJAG00000086138 #22	GADD45G (ENSCJAG00000075792)	SEMA4D (ENSCJAG00000007883)	SECISBP2 (ENSCJAG00000007806)	CKS2 (ENSCJAG00000082907)	SHC3 (ENSCJAG00000011207)	S1PR3 (ENSCJAG00000045198)	ENSCJAG00000045436	NXNL2 (ENSCJAG00000040941)	SPIN1 (ENSCJAG00000038940)	ENSCJAG00000035362	ENSCJAG00000072273	ENSCJAG00000042138	ENSCJAG00000008312	ENSCJAG00000070221	ENSCJAG00000075853
Cebidae_a	ANCESTRAL SPECIES	24	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00940000153783.b.b.c.b.d.a	ENSGT00390000008429 #18	ENSGT00910000147297	ENSGT00390000001505.a.b #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150.f.b	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972.e #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Bolivian squirrel monkey	MODERN SPECIES	127	UBA7 (ENSSBOG00000035974) #8	INKA1 (ENSSBOG00000024118) #9	CDHR4 (ENSSBOG00000027285) #10	IP6K1 (ENSSBOG00000036172) #11	GMPPB (ENSSBOG00000034433) #12	RNF123 (ENSSBOG00000033273) #14	MST1 (ENSSBOG00000033724) #15	APEH (ENSSBOG00000031846) #16	BSN (ENSSBOG00000027936) #17	ENSSBOG00000028754	DAG1 (ENSSBOG00000033298) #18	ENSSBOG00000033393	NICN1 (ENSSBOG00000034672) #19	ENSSBOG00000027333 #20	TCTA (ENSSBOG00000027277) #21	RHOA (ENSSBOG00000035785) #22	GPX1 (ENSSBOG00000027004)	USP4 (ENSSBOG00000030849) #23	C3orf62 (ENSSBOG00000018327)	IHO1 (ENSSBOG00000021171)	C3orf84 (ENSSBOG00000030757) #24	KLHDC8B (ENSSBOG00000028793) #25	CCDC71 (ENSSBOG00000017842) #26	LAMB2 (ENSSBOG00000022847) #27	USP19 (ENSSBOG00000026675) #28	ENSSBOG00000025786 #29	QRICH1 (ENSSBOG00000019070) #30	IMPDH2 (ENSSBOG00000033937) #32	ENSSBOG00000016233	NDUFAF3 (ENSSBOG00000020650) #31	DALRD3 (ENSSBOG00000019867) #33
Mas night monkey	MODERN SPECIES	1216	INKA1 (ENSANAG00000026875) #9	CDHR4 (ENSANAG00000026198) #10	IP6K1 (ENSANAG00000038005) #11	GMPPB (ENSANAG00000030177) #12	RNF123 (ENSANAG00000033279) #14	MST1 (ENSANAG00000026612) #15	APEH (ENSANAG00000031110) #16	ENSANAG00000022804	BSN (ENSANAG00000037586) #17	ENSANAG00000035024	DAG1 (ENSANAG00000026927) #18	ENSANAG00000031541	ENSANAG00000030342 #19	AMT (ENSANAG00000027123) #20	TCTA (ENSANAG00000031226) #21	ENSANAG00000035201 #22	USP4 (ENSANAG00000027506) #23	C3orf62 (ENSANAG00000033847)	IHO1 (ENSANAG00000036680)	C3orf84 (ENSANAG00000023302) #24	KLHDC8B (ENSANAG00000026478) #25	CCDC71 (ENSANAG00000005027) #26	LAMB2 (ENSANAG00000020048) #27	USP19 (ENSANAG00000037255) #28	ENSANAG00000031868 #29	QRICH1 (ENSANAG00000037747) #30	ENSANAG00000019030	IMPDH2 (ENSANAG00000025168) #32	NDUFAF3 (ENSANAG00000022893) #31	DALRD3 (ENSANAG00000030773) #33	WDR6 (ENSANAG00000031798) #34
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	2173																RHOA (ENSTSYG00000036850) #22	GPX1 (ENSTSYG00000030223)
Tarsier	MODERN SPECIES	4690																ENSTSYG00000027497 #22	ENSTSYG00000035465
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Lemuriformes	ANCESTRAL SPECIES	17	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Lemuriformes_a	ANCESTRAL SPECIES	6	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00980000198877	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Greater bamboo lemur	MODERN SPECIES	949													NICN1 (ENSPSMG00000026013) #19	AMT (ENSPSMG00000026012) #20	TCTA (ENSPSMG00000026011) #21	RHOA (ENSPSMG00000026009) #22	GPX1 (ENSPSMG00000026008)	ENSPSMG00000026006	USP4 (ENSPSMG00000026005) #23	C3orf62 (ENSPSMG00000026004)	ENSPSMG00000026003	C3orf84 (ENSPSMG00000026002) #24	KLHDC8B (ENSPSMG00000026001) #25	CCDC71 (ENSPSMG00000026000) #26	LAMB2 (ENSPSMG00000025999) #27	USP19 (ENSPSMG00000025998) #28	QARS1 (ENSPSMG00000025997) #29	QRICH1 (ENSPSMG00000025996) #30	NDUFAF3 (ENSPSMG00000025995) #31	DALRD3 (ENSPSMG00000025993) #33	WDR6 (ENSPSMG00000025992) #34
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	50	CAMKV (ENSPCOG00000022409)	TRAIP (ENSPCOG00000027327) #7	UBA7 (ENSPCOG00000026668) #8	INKA1 (ENSPCOG00000025590) #9	CDHR4 (ENSPCOG00000020495) #10	IP6K1 (ENSPCOG00000012769) #11	GMPPB (ENSPCOG00000026880) #12	RNF123 (ENSPCOG00000013664) #14	MST1 (ENSPCOG00000005348) #15	APEH (ENSPCOG00000028013) #16	BSN (ENSPCOG00000025030) #17	DAG1 (ENSPCOG00000023915) #18	NICN1 (ENSPCOG00000021271) #19	AMT (ENSPCOG00000016597) #20	TCTA (ENSPCOG00000018175) #21	RHOA (ENSPCOG00000014495) #22	GPX1 (ENSPCOG00000023726)	USP4 (ENSPCOG00000023286) #23	C3orf62 (ENSPCOG00000027475)	ENSPCOG00000023086	C3orf84 (ENSPCOG00000019596) #24	KLHDC8B (ENSPCOG00000005585) #25	LAMB2 (ENSPCOG00000003248) #27	USP19 (ENSPCOG00000021600) #28	QARS1 (ENSPCOG00000022610) #29	QRICH1 (ENSPCOG00000028140) #30	IMPDH2 (ENSPCOG00000027001) #32	NDUFAF3 (ENSPCOG00000014463) #31	DALRD3 (ENSPCOG00000027419) #33	WDR6 (ENSPCOG00000018888) #34	P4HTM (ENSPCOG00000006504) #35
Coquerels sifaka	MODERN SPECIES	397						MSTN (ENSPCOG00000018963)	ENSPCOG00000024899	ENSPCOG00000027488	ENSPCOG00000023820	MFSD6 (ENSPCOG00000015506)	NEMP2 (ENSPCOG00000024548)	ENSPCOG00000022085	GLS (ENSPCOG00000028405)	STAT1 (ENSPCOG00000015237)	STAT4 (ENSPCOG00000026832)	ENSPCOG00000025067 #22	ENSPCOG00000023881	MYO1B (ENSPCOG00000024801)	NABP1 (ENSPCOG00000013496)	ENSPCOG00000014119	TMEFF2 (ENSPCOG00000016469)
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	5	TRAIP (ENSMICG00000010789) #7	UBA7 (ENSMICG00000047457) #8	INKA1 (ENSMICG00000010761) #9	CDHR4 (ENSMICG00000028215) #10	ENSMICG00000031354	IP6K1 (ENSMICG00000042276) #11	GMPPB (ENSMICG00000010738) #12	RNF123 (ENSMICG00000010706) #14	MST1 (ENSMICG00000041447) #15	APEH (ENSMICG00000010662) #16	BSN (ENSMICG00000010621) #17	DAG1 (ENSMICG00000010618) #18	NICN1 (ENSMICG00000001261) #19	AMT (ENSMICG00000001251) #20	TCTA (ENSMICG00000043725) #21	RHOA (ENSMICG00000032818) #22	GPX1 (ENSMICG00000034931)	USP4 (ENSMICG00000043936) #23	C3orf62 (ENSMICG00000044230)	IHO1 (ENSMICG00000029553)	C3orf84 (ENSMICG00000026553) #24	KLHDC8B (ENSMICG00000007972) #25	CCDC71 (ENSMICG00000034099) #26	LAMB2 (ENSMICG00000007913) #27	USP19 (ENSMICG00000007895) #28	QARS1 (ENSMICG00000007885) #29	QRICH1 (ENSMICG00000028751) #30	IMPDH2 (ENSMICG00000007866) #32	NDUFAF3 (ENSMICG00000007862) #31	DALRD3 (ENSMICG00000007858) #33	WDR6 (ENSMICG00000007852) #34
Mouse lemur	MODERN SPECIES	169	ENSMICG00000034786	ENSMICG00000033128	ENSMICG00000030858	ENSMICG00000027545	SLITRK2 (ENSMICG00000003910)	ENSMICG00000014241	ENSMICG00000007978	SHROOM2 (ENSMICG00000045523)	GPR143 (ENSMICG00000010413)	ENSMICG00000010404	ANOS1 (ENSMICG00000015083)	PNPLA4 (ENSMICG00000009614)	STS (ENSMICG00000013455)	PUDP (ENSMICG00000017082)	ENSMICG00000036320	ENSMICG00000044079 #22	ENSMICG00000046354	ENSMICG00000046693	PRKX (ENSMICG00000002892)	MXRA5 (ENSMICG00000003692)	WWC3 (ENSMICG00000002471)	CLCN4 (ENSMICG00000002480)	MID1 (ENSMICG00000002488)	HCCS (ENSMICG00000014372)	ARHGAP6 (ENSMICG00000014376)	AMELX (ENSMICG00000034215)	ENSMICG00000046301	MSL3 (ENSMICG00000014399)	FRMPD4 (ENSMICG00000014417)	PRPS2 (ENSMICG00000034531)	TLR7 (ENSMICG00000030654)
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00910000147297	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00910000147297	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31
Suina	ANCESTRAL SPECIES	1	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Chacoan peccary	MODERN SPECIES	950	TRAIP (ENSCWAG00000019468) #7	UBA7 (ENSCWAG00000019360) #8	INKA1 (ENSCWAG00000019340) #9	CDHR4 (ENSCWAG00000019261) #10	IP6K1 (ENSCWAG00000019240) #11	GMPPB (ENSCWAG00000019216) #12	AMIGO3 (ENSCWAG00000019208) #13	RNF123 (ENSCWAG00000019153) #14	MST1 (ENSCWAG00000019054) #15	APEH (ENSCWAG00000018898) #16	BSN (ENSCWAG00000018840) #17	DAG1 (ENSCWAG00000018804) #18	NICN1 (ENSCWAG00000018764) #19	AMT (ENSCWAG00000018363) #20	TCTA (ENSCWAG00000018314) #21	RHOA (ENSCWAG00000018291) #22	GPX1 (ENSCWAG00000018272)	USP4 (ENSCWAG00000018178) #23	C3orf62 (ENSCWAG00000018125)	IHO1 (ENSCWAG00000018076)	C3orf84 (ENSCWAG00000018023) #24	KLHDC8B (ENSCWAG00000018001) #25	CCDC71 (ENSCWAG00000017986) #26	LAMB2 (ENSCWAG00000017876) #27	USP19 (ENSCWAG00000017460) #28	QARS1 (ENSCWAG00000017330) #29	QRICH1 (ENSCWAG00000017279) #30	IMPDH2 (ENSCWAG00000017226) #32	NDUFAF3 (ENSCWAG00000017192) #31	DALRD3 (ENSCWAG00000017109) #33	WDR6 (ENSCWAG00000017019) #34
Pig	MODERN SPECIES	4	TRAIP (ENSSSCG00000026977) #7	UBA7 (ENSSSCG00000011393) #8	INKA1 (ENSSSCG00000049797) #9	CDHR4 (ENSSSCG00000011391) #10	IP6K1 (ENSSSCG00000011390) #11	GMPPB (ENSSSCG00000062528) #12	AMIGO3 (ENSSSCG00000011389) #13	RNF123 (ENSSSCG00000011387) #14	MST1 (ENSSSCG00000011386) #15	APEH (ENSSSCG00000011385) #16	BSN (ENSSSCG00000011384) #17	DAG1 (ENSSSCG00000034357) #18	NICN1 (ENSSSCG00000031594) #19	AMT (ENSSSCG00000022975) #20	TCTA (ENSSSCG00000037459) #21	RHOA (ENSSSCG00000022080) #22	GPX1 (ENSSSCG00000060656)	USP4 (ENSSSCG00000011382) #23	C3orf62 (ENSSSCG00000056386)	IHO1 (ENSSSCG00000011376)	C3orf84 (ENSSSCG00000058399) #24	KLHDC8B (ENSSSCG00000011379) #25	CCDC71 (ENSSSCG00000011378) #26	LAMB2 (ENSSSCG00000011377) #27	USP19 (ENSSSCG00000011375) #28	QARS1 (ENSSSCG00000032031) #29	IMPDH2 (ENSSSCG00000011373) #32	NDUFAF3 (ENSSSCG00000011371) #31	DALRD3 (ENSSSCG00000011370) #33	WDR6 (ENSSSCG00000011369) #34	P4HTM (ENSSSCG00000011368) #35
Artiodactyla_a	ANCESTRAL SPECIES	18	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31
Camelidae	ANCESTRAL SPECIES	7	ENSGT00390000006665.a	ENSGT00940000157842	ENSGT00940000156468	ENSGT00390000007696 #7	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Alpaca	MODERN SPECIES	2058																RHOA (ENSVPAG00000010931) #22	USP4 (ENSVPAG00000010928) #23	IHO1 (ENSVPAG00000010926)
Arabian camel	MODERN SPECIES	8	CAMKV (ENSCDRG00005006662)	TRAIP (ENSCDRG00005006548) #7	INKA1 (ENSCDRG00005006504) #9	UBA7 (ENSCDRG00005006225) #8	IP6K1 (ENSCDRG00005006149) #11	GMPPB (ENSCDRG00005006104) #12	AMIGO3 (ENSCDRG00005006096) #13	RNF123 (ENSCDRG00005005945) #14	MST1 (ENSCDRG00005005862) #15	APEH (ENSCDRG00005005764) #16	BSN (ENSCDRG00005005743) #17	DAG1 (ENSCDRG00005005724) #18	NICN1 (ENSCDRG00005005671) #19	AMT (ENSCDRG00005005389) #20	TCTA (ENSCDRG00005005330) #21	RHOA (ENSCDRG00005005306) #22	ENSCDRG00005005290	USP4 (ENSCDRG00005005199) #23	C3orf62 (ENSCDRG00005005169)	IHO1 (ENSCDRG00005005122)	C3orf84 (ENSCDRG00005005088) #24	KLHDC8B (ENSCDRG00005005058) #25	CCDC71 (ENSCDRG00005005037) #26	LAMB2 (ENSCDRG00005004573) #27	QARS1 (ENSCDRG00005004349) #29	QRICH1 (ENSCDRG00005004282) #30	IMPDH2 (ENSCDRG00005004218) #32	NDUFAF3 (ENSCDRG00005004181) #31	DALRD3 (ENSCDRG00005004060) #33	WDR6 (ENSCDRG00005003990) #34	P4HTM (ENSCDRG00005003922) #35
Artiodactyla_b	ANCESTRAL SPECIES	21	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31
Pecora	ANCESTRAL SPECIES	17	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Percora_a	ANCESTRAL SPECIES	19	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT01030000235142.a	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Bovidae	ANCESTRAL SPECIES	19	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT01030000235142.a	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Caprinae	DUPLICATION
Caprinae	ANCESTRAL SPECIES	15	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00940000155781 #14	ENSGT00950000183146.b #13	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT01030000235142.a	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b.jb #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00910000146976	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Goat	MODERN SPECIES	14	UBA7 (ENSCHIG00000011154) #8	INKA1 (ENSCHIG00000014035) #9	CDHR4 (ENSCHIG00000018704) #10	IP6K1 (ENSCHIG00000025216) #11	GMPPB (ENSCHIG00000000504) #12	RNF123 (ENSCHIG00000011253) #14	AMIGO3 (ENSCHIG00000007879) #13	MST1 (ENSCHIG00000014887) #15	APEH (ENSCHIG00000007324) #16	BSN (ENSCHIG00000015658) #17	DAG1 (ENSCHIG00000015784) #18	ENSCHIG00000009691	NICN1 (ENSCHIG00000010612) #19	AMT (ENSCHIG00000017556) #20	TCTA (ENSCHIG00000014306) #21	RHOA (ENSCHIG00000013894) #22	GPX1 (ENSCHIG00000017983)	USP4 (ENSCHIG00000017572) #23	C3orf62 (ENSCHIG00000009739)	IHO1 (ENSCHIG00000009674)	C3orf84 (ENSCHIG00000015744) #24	KLHDC8B (ENSCHIG00000022366) #25	CCDC71 (ENSCHIG00000012608) #26	LAMB2 (ENSCHIG00000015310) #27	USP19 (ENSCHIG00000019576) #28	QARS1 (ENSCHIG00000022953) #29	QRICH1 (ENSCHIG00000016705) #30	IMPDH2 (ENSCHIG00000011336) #32	ENSCHIG00000008827	NDUFAF3 (ENSCHIG00000022087) #31	DALRD3 (ENSCHIG00000018628) #33
Rambouillet Sheep	MODERN SPECIES	10	TRAIP (ENSOARG00020018511) #7	UBA7 (ENSOARG00020018640) #8	INKA1 (ENSOARG00020018717) #9	CDHR4 (ENSOARG00020018751) #10	IP6K1 (ENSOARG00020019030) #11	GMPPB (ENSOARG00020019131) #12	RNF123 (ENSOARG00020019208) #14	AMIGO3 (ENSOARG00020019658) #13	MST1 (ENSOARG00020019678) #15	APEH (ENSOARG00020019834) #16	BSN (ENSOARG00020020014) #17	DAG1 (ENSOARG00020020102) #18	NICN1 (ENSOARG00020020154) #19	AMT (ENSOARG00020020285) #20	TCTA (ENSOARG00020020854) #21	RHOA (ENSOARG00020020892) #22	GPX1 (ENSOARG00020020922)	USP4 (ENSOARG00020020981) #23	C3orf62 (ENSOARG00020021187)	ENSOARG00020021222	C3orf84 (ENSOARG00020021267) #24	KLHDC8B (ENSOARG00020021328) #25	CCDC71 (ENSOARG00020021366) #26	ENSOARG00020021399 #27	LAMB2 (ENSOARG00020021611) #27	USP19 (ENSOARG00020021723) #28	QARS1 (ENSOARG00020022319) #29	QRICH1 (ENSOARG00020022369) #30	IMPDH2 (ENSOARG00020022397) #32	NDUFAF3 (ENSOARG00020022430) #31	DALRD3 (ENSOARG00020022500) #33
Caprinae	ANCESTRAL SPECIES	9	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00940000153322.A	ENSGT00390000017284.a.b	ENSGT00510000047418	ENSGT00390000010888.c.a	ENSGT00390000005650	ENSGT00940000161413	ENSGT00940000161043	ENSGT00940000161863	ENSGT01030000234575.d.c	ENSGT00440000033552	ENSGT00940000159299	ENSGT00940000160058	ENSGT00950000182945.b.b.kb #22	ENSGT00390000006707.q.e.c	ENSGT00950000183114.a.a	ENSGT00950000182886.b.a	ENSGT00390000006408	ENSGT00390000008808.o	ENSGT01050000245125	ENSGT00940000156258	ENSGT00940000159934	ENSGT00940000161744	ENSGT00940000153168.B	ENSGT00940000156126	ENSGT00500000044929	ENSGT00900000143268	ENSGT00940000155823.B	ENSGT00940000158843
Goat	MODERN SPECIES	2	ENSCHIG00000016045	CYP26B1 (ENSCHIG00000017070)	DYSF (ENSCHIG00000007595)	ENSCHIG00000022714	ENSCHIG00000003741	PAIP2B (ENSCHIG00000021303)	NAGK (ENSCHIG00000025409)	TEX261 (ENSCHIG00000009683)	ATP6V1B1 (ENSCHIG00000014286)	VAX2 (ENSCHIG00000011015)	CD207 (ENSCHIG00000009900)	CLEC4F (ENSCHIG00000021250)	FIGLA (ENSCHIG00000020665)	ADD2 (ENSCHIG00000016487)	TGFA (ENSCHIG00000018063)	ENSCHIG00000013552 #22	ENSCHIG00000009384	ENSCHIG00000015553	XDH (ENSCHIG00000017276)	SRD5A2 (ENSCHIG00000025648)	MEMO1 (ENSCHIG00000006439)	ENSCHIG00000021755	ENSCHIG00000021921	SPAST (ENSCHIG00000015378)	SLC30A6 (ENSCHIG00000024551)	NLRC4 (ENSCHIG00000012340)	YIPF4 (ENSCHIG00000026569)	BIRC6 (ENSCHIG00000008751)	TTC27 (ENSCHIG00000017374)	ENSCHIG00000022577	ENSCHIG00000008282
Rambouillet Sheep	MODERN SPECIES	19	ENSOARG00020007772	EXOC6B (ENSOARG00020007215)	CYP26B1 (ENSOARG00020007013)	DYSF (ENSOARG00020005927)	PAIP2B (ENSOARG00020005747)	NAGK (ENSOARG00020005719)	TEX261 (ENSOARG00020005704)	ANKRD53 (ENSOARG00020005675)	ATP6V1B1 (ENSOARG00020005560)	VAX2 (ENSOARG00020005545)	CD207 (ENSOARG00020005507)	ENSOARG00020005471	FIGLA (ENSOARG00020005437)	ADD2 (ENSOARG00020005142)	TGFA (ENSOARG00020005087)	ENSOARG00020005077 #22	ENSOARG00020005043	XDH (ENSOARG00020004988)	ENSOARG00020004969	ENSOARG00020004948	SRD5A2 (ENSOARG00020004906)	MEMO1 (ENSOARG00020004857)	ENSOARG00020004831	SPAST (ENSOARG00020004331)	SLC30A6 (ENSOARG00020004173)	NLRC4 (ENSOARG00020004057)	YIPF4 (ENSOARG00020004030)	BIRC6 (ENSOARG00020002705)	TTC27 (ENSOARG00020002552)	TMOD3 (ENSOARG00020002535)	LTBP1 (ENSOARG00020001760)
Bovinae	ANCESTRAL SPECIES	16	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658.b	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Bos	ANCESTRAL SPECIES	16	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT01100000263480.a.b.b.a.a.b.b.a.a.b	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Bos_a	ANCESTRAL SPECIES	9	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT01100000263480.a.b.b.a.a.b.b.a.a.b	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Wild yak	MODERN SPECIES	2401																RHOA (ENSBMUG00000014394) #22	GPX1 (ENSBMUG00000014390)	USP4 (ENSBMUG00000014366) #23	C3orf62 (ENSBMUG00000014327)	IHO1 (ENSBMUG00000014305)	C3orf84 (ENSBMUG00000014279) #24	KLHDC8B (ENSBMUG00000014264) #25	CCDC71 (ENSBMUG00000014262) #26	ENSBMUG00000014250 #27	LAMB2 (ENSBMUG00000014195) #27	USP19 (ENSBMUG00000014055) #28	QARS1 (ENSBMUG00000013897) #29	QRICH1 (ENSBMUG00000013833) #30	IMPDH2 (ENSBMUG00000013821) #32	NDUFAF3 (ENSBMUG00000013786) #31	DALRD3 (ENSBMUG00000013752) #33
Domestic yak	MODERN SPECIES	14	ENSBGRG00000022194	ENSBGRG00000022158	IP6K1 (ENSBGRG00000022097) #11	GMPPB (ENSBGRG00000021950) #12	AMIGO3 (ENSBGRG00000021936) #13	RNF123 (ENSBGRG00000021700) #14	MST1 (ENSBGRG00000021540) #15	APEH (ENSBGRG00000020998) #16	BSN (ENSBGRG00000020893) #17	DAG1 (ENSBGRG00000020861) #18	ENSBGRG00000020826	NICN1 (ENSBGRG00000020735) #19	AMT (ENSBGRG00000020243) #20	TCTA (ENSBGRG00000020134) #21	ENSBGRG00000020118	RHOA (ENSBGRG00000020019) #22	GPX1 (ENSBGRG00000019961)	USP4 (ENSBGRG00000019272) #23	C3orf62 (ENSBGRG00000019210)	ENSBGRG00000019151	C3orf84 (ENSBGRG00000019083) #24	KLHDC8B (ENSBGRG00000019038) #25	CCDC71 (ENSBGRG00000019022) #26	USP19 (ENSBGRG00000017987) #28	LAMB2 (ENSBGRG00000016632) #27	QARS1 (ENSBGRG00000015757) #29	QRICH1 (ENSBGRG00000015681) #30	IMPDH2 (ENSBGRG00000015395) #32	NDUFAF3 (ENSBGRG00000015330) #31	DALRD3 (ENSBGRG00000024128) #33	WDR6 (ENSBGRG00000024062) #34
Bos_b	ANCESTRAL SPECIES	17	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT01100000263480.a.b.b.a.a.b.b.a.a.b	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Hybrid Bos Indicus	MODERN SPECIES	14	CAMKV (ENSBIXG00005001014)	TRAIP (ENSBIXG00005011136) #7	UBA7 (ENSBIXG00005007099) #8	INKA1 (ENSBIXG00005011173) #9	CDHR4 (ENSBIXG00005001045) #10	IP6K1 (ENSBIXG00005011256) #11	AMIGO3 (ENSBIXG00005011300) #13	RNF123 (ENSBIXG00005011367) #14	MST1 (ENSBIXG00005011434) #15	APEH (ENSBIXG00005011475) #16	BSN (ENSBIXG00005011525) #17	DAG1 (ENSBIXG00005011549) #18	AMT (ENSBIXG00005011718) #20	TCTA (ENSBIXG00005007432) #21	ENSBIXG00005006787	RHOA (ENSBIXG00005011793) #22	GPX1 (ENSBIXG00005011815)	C3orf62 (ENSBIXG00005005956)	USP4 (ENSBIXG00005011888) #23	IHO1 (ENSBIXG00005011909)	C3orf84 (ENSBIXG00005001208) #24	KLHDC8B (ENSBIXG00005011961) #25	CCDC71 (ENSBIXG00005000414) #26	ENSBIXG00005002536 #27	LAMB2 (ENSBIXG00005016314) #27	USP19 (ENSBIXG00005017369) #28	QARS1 (ENSBIXG00005017449) #29	QRICH1 (ENSBIXG00005017495) #30	IMPDH2 (ENSBIXG00005002847) #32	NDUFAF3 (ENSBIXG00005002855) #31	DALRD3 (ENSBIXG00005017624) #33
Cow	MODERN SPECIES	14	TRAIP (ENSBTAG00000004877) #7	UBA7 (ENSBTAG00000012335) #8	INKA1 (ENSBTAG00000012322) #9	CDHR4 (ENSBTAG00000005728) #10	IP6K1 (ENSBTAG00000011595) #11	GMPPB (ENSBTAG00000032026) #12	RNF123 (ENSBTAG00000011588) #14	AMIGO3 (ENSBTAG00000045547) #13	MST1 (ENSBTAG00000011585) #15	APEH (ENSBTAG00000011583) #16	BSN (ENSBTAG00000011581) #17	DAG1 (ENSBTAG00000011580) #18	NICN1 (ENSBTAG00000000387) #19	AMT (ENSBTAG00000002321) #20	TCTA (ENSBTAG00000022632) #21	RHOA (ENSBTAG00000004279) #22	GPX1 (ENSBTAG00000054195)	USP4 (ENSBTAG00000011899) #23	C22H3orf62 (ENSBTAG00000011894)	IHO1 (ENSBTAG00000009371)	C22H3orf84 (ENSBTAG00000000982) #24	KLHDC8B (ENSBTAG00000000981) #25	CCDC71 (ENSBTAG00000013932) #26	ENSBTAG00000055290 #27	LAMB2 (ENSBTAG00000022635) #27	USP19 (ENSBTAG00000018921) #28	QARS1 (ENSBTAG00000018928) #29	QRICH1 (ENSBTAG00000018924) #30	IMPDH2 (ENSBTAG00000031837) #32	NDUFAF3 (ENSBTAG00000018918) #31	DALRD3 (ENSBTAG00000018913) #33
American bison	MODERN SPECIES	3218	UBA7 (ENSBBBG00000003166) #8	CDHR4 (ENSBBBG00000014084) #10	IP6K1 (ENSBBBG00000003137) #11	GMPPB (ENSBBBG00000014046) #12	ENSBBBG00000014023 #14	AMIGO3 (ENSBBBG00000014017) #13	ENSBBBG00000003101 #14	ENSBBBG00000014004	MST1 (ENSBBBG00000014000) #15	APEH (ENSBBBG00000013989) #16	BSN (ENSBBBG00000013959) #17	ENSBBBG00000003033	NICN1 (ENSBBBG00000003031) #19	AMT (ENSBBBG00000003011) #20	TCTA (ENSBBBG00000008744) #21	RHOA (ENSBBBG00000013828) #22	GPX1 (ENSBBBG00000013819)	USP4 (ENSBBBG00000013809) #23	C3orf62 (ENSBBBG00000002946)	IHO1 (ENSBBBG00000013760)	C3orf84 (ENSBBBG00000013731) #24	KLHDC8B (ENSBBBG00000002923) #25	CCDC71 (ENSBBBG00000002918) #26	LAMB2 (ENSBBBG00000013717) #27	USP19 (ENSBBBG00000013677) #28	QARS1 (ENSBBBG00000002795) #29	QRICH1 (ENSBBBG00000013477) #30	IMPDH2 (ENSBBBG00000002761) #32	NDUFAF3 (ENSBBBG00000013435) #31	DALRD3 (ENSBBBG00000013423) #33	WDR6 (ENSBBBG00000013397) #34
Siberian musk deer	MODERN SPECIES	1221	UBA7 (ENSMMSG00000017878) #8	INKA1 (ENSMMSG00000017826) #9	CDHR4 (ENSMMSG00000017643) #10	IP6K1 (ENSMMSG00000017602) #11	GMPPB (ENSMMSG00000017539) #12	AMIGO3 (ENSMMSG00000017526) #13	RNF123 (ENSMMSG00000017430) #14	MST1 (ENSMMSG00000017325) #15	APEH (ENSMMSG00000017269) #16	BSN (ENSMMSG00000017196) #17	DAG1 (ENSMMSG00000017160) #18	ENSMMSG00000017122	NICN1 (ENSMMSG00000017077) #19	AMT (ENSMMSG00000015660) #20	TCTA (ENSMMSG00000015587) #21	RHOA (ENSMMSG00000015567) #22	ENSMMSG00000015545	USP4 (ENSMMSG00000015420) #23	C3orf62 (ENSMMSG00000015397)	IHO1 (ENSMMSG00000015321)	C3orf84 (ENSMMSG00000015293) #24	KLHDC8B (ENSMMSG00000015273) #25	CCDC71 (ENSMMSG00000015262) #26	ENSMMSG00000015241 #27	LAMB2 (ENSMMSG00000015126) #27	USP19 (ENSMMSG00000014237) #28	QARS1 (ENSMMSG00000014108) #29	QRICH1 (ENSMMSG00000014082) #30	IMPDH2 (ENSMMSG00000013996) #32	NDUFAF3 (ENSMMSG00000013945) #31	DALRD3 (ENSMMSG00000013900) #33
Yarkand deer	MODERN SPECIES	16	TRAIP (ENSCHYG00000023857) #7	UBA7 (ENSCHYG00000023478) #8	INKA1 (ENSCHYG00000023419) #9	CDHR4 (ENSCHYG00000023265) #10	IP6K1 (ENSCHYG00000023188) #11	GMPPB (ENSCHYG00000023129) #12	AMIGO3 (ENSCHYG00000023119) #13	RNF123 (ENSCHYG00000022988) #14	MST1 (ENSCHYG00000022927) #15	APEH (ENSCHYG00000022817) #16	BSN (ENSCHYG00000022765) #17	DAG1 (ENSCHYG00000022724) #18	NICN1 (ENSCHYG00000022672) #19	AMT (ENSCHYG00000021143) #20	TCTA (ENSCHYG00000020985) #21	RHOA (ENSCHYG00000020943) #22	GPX1 (ENSCHYG00000020891)	USP4 (ENSCHYG00000020223) #23	C3orf62 (ENSCHYG00000020130)	ENSCHYG00000020109	ENSCHYG00000020073	C3orf84 (ENSCHYG00000019991) #24	KLHDC8B (ENSCHYG00000019923) #25	CCDC71 (ENSCHYG00000019908) #26	LAMB2 (ENSCHYG00000018059) #27	USP19 (ENSCHYG00000017124) #28	QARS1 (ENSCHYG00000016793) #29	QRICH1 (ENSCHYG00000016705) #30	IMPDH2 (ENSCHYG00000016573) #32	NDUFAF3 (ENSCHYG00000016470) #31	DALRD3 (ENSCHYG00000016269) #33
Cetacea	ANCESTRAL SPECIES	7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00990000203969.c.a	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Blue whale	MODERN SPECIES	2	ENSBMSG00010011457	CAMKV (ENSBMSG00010011342)	ENSBMSG00010011274 #7	UBA7 (ENSBMSG00010011261) #8	INKA1 (ENSBMSG00010011241) #9	CDHR4 (ENSBMSG00010011205) #10	ENSBMSG00010011075 #14	MST1 (ENSBMSG00010011031) #15	APEH (ENSBMSG00010011013) #16	BSN (ENSBMSG00010010989) #17	DAG1 (ENSBMSG00010010968) #18	ENSBMSG00010010960	NICN1 (ENSBMSG00010010937) #19	AMT (ENSBMSG00010010835) #20	TCTA (ENSBMSG00010010765) #21	RHOA (ENSBMSG00010010749) #22	ENSBMSG00010010726	USP4 (ENSBMSG00010010655) #23	C3orf62 (ENSBMSG00010010582)	ENSBMSG00010010572	IHO1 (ENSBMSG00010010547)	C3orf84 (ENSBMSG00010010524) #24	KLHDC8B (ENSBMSG00010010507) #25	CCDC71 (ENSBMSG00010010496) #26	LAMB2 (ENSBMSG00010010468) #27	USP19 (ENSBMSG00010010311) #28	QARS1 (ENSBMSG00010010201) #29	QRICH1 (ENSBMSG00010010177) #30	IMPDH2 (ENSBMSG00010010156) #32	NDUFAF3 (ENSBMSG00010010129) #31	DALRD3 (ENSBMSG00010010094) #33
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00990000203969.c.a	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00990000203969.c.a	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726.g #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Dolphin	MODERN SPECIES	1494																RHOA (ENSTTRG00000017370) #22	GPX1 (ENSTTRG00000017369)	USP4 (ENSTTRG00000017365) #23	ENSTTRG00000017364	IHO1 (ENSTTRG00000017363)	KLHDC8B (ENSTTRG00000017361) #25	CCDC71 (ENSTTRG00000017360) #26	LAMB2 (ENSTTRG00000017357) #27	USP19 (ENSTTRG00000017355) #28	QARS1 (ENSTTRG00000017352) #29	QRICH1 (ENSTTRG00000017351) #30	IMPDH2 (ENSTTRG00000017349) #32	NDUFAF3 (ENSTTRG00000017348) #31	DALRD3 (ENSTTRG00000017347) #33	WDR6 (ENSTTRG00000017346) #34	P4HTM (ENSTTRG00000017345) #35
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00990000203969.c.a	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726.g #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Vaquita	MODERN SPECIES	2	UBA7 (ENSPSNG00000012558) #8	INKA1 (ENSPSNG00000012607) #9	CDHR4 (ENSPSNG00000012663) #10	IP6K1 (ENSPSNG00000012930) #11	GMPPB (ENSPSNG00000012985) #12	RNF123 (ENSPSNG00000013068) #14	AMIGO3 (ENSPSNG00000013254) #13	MST1 (ENSPSNG00000013285) #15	APEH (ENSPSNG00000013525) #16	BSN (ENSPSNG00000013663) #17	DAG1 (ENSPSNG00000013813) #18	ENSPSNG00000004157	NICN1 (ENSPSNG00000004182) #19	AMT (ENSPSNG00000004381) #20	TCTA (ENSPSNG00000004703) #21	RHOA (ENSPSNG00000004743) #22	GPX1 (ENSPSNG00000004763)	USP4 (ENSPSNG00000004797) #23	IHO1 (ENSPSNG00000004857)	C3orf84 (ENSPSNG00000004885) #24	KLHDC8B (ENSPSNG00000004916) #25	CCDC71 (ENSPSNG00000004946) #26	LAMB2 (ENSPSNG00000005009) #27	USP19 (ENSPSNG00000005218) #28	QARS1 (ENSPSNG00000005651) #29	QRICH1 (ENSPSNG00000005735) #30	ENSPSNG00000005779 #32	NDUFAF3 (ENSPSNG00000005911) #31	DALRD3 (ENSPSNG00000005963) #33	WDR6 (ENSPSNG00000006056) #34	P4HTM (ENSPSNG00000006122) #35
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00990000203969.c.a	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00860000135958	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726.g #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Narwhal	MODERN SPECIES	310	UBA7 (ENSMMNG00015013426) #8	INKA1 (ENSMMNG00015013403) #9	CDHR4 (ENSMMNG00015013378) #10	IP6K1 (ENSMMNG00015013352) #11	GMPPB (ENSMMNG00015013331) #12	AMIGO3 (ENSMMNG00015013322) #13	RNF123 (ENSMMNG00015013279) #14	MST1 (ENSMMNG00015013231) #15	APEH (ENSMMNG00015013189) #16	BSN (ENSMMNG00015013162) #17	DAG1 (ENSMMNG00015013146) #18	ENSMMNG00015013133	NICN1 (ENSMMNG00015013108) #19	AMT (ENSMMNG00015013041) #20	TCTA (ENSMMNG00015012991) #21	RHOA (ENSMMNG00015012980) #22	GPX1 (ENSMMNG00015012971)	USP4 (ENSMMNG00015012950) #23	C3orf62 (ENSMMNG00015012883)	IHO1 (ENSMMNG00015012868)	C3orf84 (ENSMMNG00015012850) #24	KLHDC8B (ENSMMNG00015012828) #25	CCDC71 (ENSMMNG00015012816) #26	LAMB2 (ENSMMNG00015012783) #27	USP19 (ENSMMNG00015012611) #28	QARS1 (ENSMMNG00015012503) #29	QRICH1 (ENSMMNG00015012459) #30	IMPDH2 (ENSMMNG00015012428) #32	NDUFAF3 (ENSMMNG00015012388) #31	DALRD3 (ENSMMNG00015012304) #33	WDR6 (ENSMMNG00015012270) #34
Beluga whale	MODERN SPECIES	28	CAMKV (ENSDLEG00000012941)	TRAIP (ENSDLEG00000012971) #7	UBA7 (ENSDLEG00000013104) #8	FAM212A (ENSDLEG00000013168) #9	CDHR4 (ENSDLEG00000013185) #10	IP6K1 (ENSDLEG00000013312) #11	GMPPB (ENSDLEG00000013323) #12	AMIGO3 (ENSDLEG00000013976) #13	MST1 (ENSDLEG00000014051) #15	APEH (ENSDLEG00000014933) #16	BSN (ENSDLEG00000015162) #17	DAG1 (ENSDLEG00000015214) #18	ENSDLEG00000015224	NICN1 (ENSDLEG00000015239) #19	AMT (ENSDLEG00000015323) #20	RHOA (ENSDLEG00000015960) #22	GPX1 (ENSDLEG00000015976)	USP4 (ENSDLEG00000016063) #23	CUNH3orf62 (ENSDLEG00000017307)	ENSDLEG00000017319	CCDC36 (ENSDLEG00000017335)	C3orf84 (ENSDLEG00000017359) #24	KLHDC8B (ENSDLEG00000017380) #25	CCDC71 (ENSDLEG00000017405) #26	LAMB2 (ENSDLEG00000017419) #27	USP19 (ENSDLEG00000017469) #28	QARS1 (ENSDLEG00000017603) #29	QRICH1 (ENSDLEG00000018099) #30	IMPDH2 (ENSDLEG00000018135) #32	NDUFAF3 (ENSDLEG00000018168) #31	DALRD3 (ENSDLEG00000018204) #33
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00910000147297	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Equus	ANCESTRAL SPECIES	5	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000164003	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Horse	MODERN SPECIES	7	TRAIP (ENSECAG00000016029) #7	UBA7 (ENSECAG00000019670) #8	INKA1 (ENSECAG00000015612) #9	CDHR4 (ENSECAG00000015622) #10	GMPPB (ENSECAG00000019354) #12	RNF123 (ENSECAG00000022815) #14	AMIGO3 (ENSECAG00000004865) #13	MST1 (ENSECAG00000021998) #15	APEH (ENSECAG00000012420) #16	BSN (ENSECAG00000008283) #17	ENSECAG00000058735	DAG1 (ENSECAG00000009665) #18	NICN1 (ENSECAG00000011269) #19	AMT (ENSECAG00000012159) #20	TCTA (ENSECAG00000017355) #21	RHOA (ENSECAG00000033791) #22	USP4 (ENSECAG00000018624) #23	IHO1 (ENSECAG00000057595)	CCDC71 (ENSECAG00000021792) #26	KLHDC8B (ENSECAG00000020454) #25	LAMB2 (ENSECAG00000021805) #27	USP19 (ENSECAG00000016554) #28	QARS1 (ENSECAG00000000809) #29	QRICH1 (ENSECAG00000042686) #30	NDUFAF3 (ENSECAG00000019013) #31	IMPDH2 (ENSECAG00000006885) #32	DALRD3 (ENSECAG00000020436) #33	WDR6 (ENSECAG00000023907) #34	P4HTM (ENSECAG00000003137) #35	ARIH2 (ENSECAG00000010851) #36	SLC25A20 (ENSECAG00000019650) #37
Chiroptera	ANCESTRAL SPECIES	19	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Megabat	MODERN SPECIES	19	TRAIP (ENSPVAG00000008768) #7	UBA7 (ENSPVAG00000008766) #8	INKA1 (ENSPVAG00000008765) #9	ENSPVAG00000008764	IP6K1 (ENSPVAG00000008763) #11	GMPPB (ENSPVAG00000008761) #12	AMIGO3 (ENSPVAG00000008760) #13	RNF123 (ENSPVAG00000008756) #14	MST1 (ENSPVAG00000008752) #15	APEH (ENSPVAG00000008750) #16	BSN (ENSPVAG00000008748) #17	DAG1 (ENSPVAG00000008746) #18	NICN1 (ENSPVAG00000008742) #19	AMT (ENSPVAG00000008741) #20	TCTA (ENSPVAG00000008739) #21	RHOA (ENSPVAG00000008738) #22	GPX1 (ENSPVAG00000008736)	USP4 (ENSPVAG00000008735) #23	C3orf62 (ENSPVAG00000008734)	IHO1 (ENSPVAG00000008733)	KLHDC8B (ENSPVAG00000008730) #25	LAMB2 (ENSPVAG00000008726) #27	USP19 (ENSPVAG00000008723) #28	QARS1 (ENSPVAG00000008720) #29	QRICH1 (ENSPVAG00000008718) #30	IMPDH2 (ENSPVAG00000008715) #32	NDUFAF3 (ENSPVAG00000008713) #31	DALRD3 (ENSPVAG00000008710) #33	WDR6 (ENSPVAG00000008708) #34	P4HTM (ENSPVAG00000008706) #35	ARIH2 (ENSPVAG00000008705) #36
Microchiroptera	ANCESTRAL SPECIES	16	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00940000155781 #14	ENSGT00950000183146.b #13	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Greater horseshoe bat	MODERN SPECIES	8	TRAIP (ENSRFEG00010020874) #7	UBA7 (ENSRFEG00010020912) #8	INKA1 (ENSRFEG00010005318) #9	CDHR4 (ENSRFEG00010005370) #10	IP6K1 (ENSRFEG00010005414) #11	GMPPB (ENSRFEG00010005449) #12	RNF123 (ENSRFEG00010005504) #14	AMIGO3 (ENSRFEG00010005538) #13	MST1 (ENSRFEG00010005560) #15	APEH (ENSRFEG00010005691) #16	BSN (ENSRFEG00010005833) #17	DAG1 (ENSRFEG00010005869) #18	NICN1 (ENSRFEG00010005912) #19	AMT (ENSRFEG00010006159) #20	TCTA (ENSRFEG00010006341) #21	RHOA (ENSRFEG00010006365) #22	GPX1 (ENSRFEG00010006388)	USP4 (ENSRFEG00010006437) #23	C3orf62 (ENSRFEG00010006582)	IHO1 (ENSRFEG00010006606)	C3orf84 (ENSRFEG00010006639) #24	KLHDC8B (ENSRFEG00010006686) #25	CCDC71 (ENSRFEG00010006704) #26	ENSRFEG00010006748 #27	LAMB2 (ENSRFEG00010006962) #27	USP19 (ENSRFEG00010007084) #28	QARS1 (ENSRFEG00010007205) #29	QRICH1 (ENSRFEG00010007287) #30	IMPDH2 (ENSRFEG00010007338) #32	NDUFAF3 (ENSRFEG00010007493) #31	DALRD3 (ENSRFEG00010007609) #33
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1866													NICN1 (ENSMLUG00000013925) #19	AMT (ENSMLUG00000013920) #20	TCTA (ENSMLUG00000013917) #21	ENSMLUG00000013911 #22	USP4 (ENSMLUG00000013894) #23	ENSMLUG00000027399	IHO1 (ENSMLUG00000013885)	C3orf84 (ENSMLUG00000030142) #24
Microbat	MODERN SPECIES	937	CCNB1 (ENSMLUG00000012856)	CENPH (ENSMLUG00000012863)	CDK7 (ENSMLUG00000002960)	CCDC125 (ENSMLUG00000002966)	AK6 (ENSMLUG00000028932)	RAD17 (ENSMLUG00000001882)	MARVELD2 (ENSMLUG00000003819)	OCLN (ENSMLUG00000007969)	ENSMLUG00000007994	ENSMLUG00000023908	ENSMLUG00000010603	BDP1 (ENSMLUG00000001252)	ENSMLUG00000024040	MCCC2 (ENSMLUG00000002792)	CARTPT (ENSMLUG00000002808)	ENSMLUG00000023473 #22	MAP1B (ENSMLUG00000005408)	MRPS27 (ENSMLUG00000007355)	PTCD2 (ENSMLUG00000007374)	ZNF366 (ENSMLUG00000007392)	ENSMLUG00000023203	TNPO1 (ENSMLUG00000016317)	FCHO2 (ENSMLUG00000017366)	ENSMLUG00000029980	TMEM171 (ENSMLUG00000006615)	TMEM174 (ENSMLUG00000015724)	ENSMLUG00000006789	ENSMLUG00000012912	ANKRA2 (ENSMLUG00000008459)	UTP15 (ENSMLUG00000008483)	ARHGEF28 (ENSMLUG00000004723)
Carnivora	ANCESTRAL SPECIES	6	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00910000147297	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Felidae	ANCESTRAL SPECIES	17	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Panthera	ANCESTRAL SPECIES	1	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645.h #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645.h #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
lion	MODERN SPECIES	2	UBA7 (ENSPLOG00000019937) #8	INKA1 (ENSPLOG00000019907) #9	CDHR4 (ENSPLOG00000019711) #10	IP6K1 (ENSPLOG00000019627) #11	GMPPB (ENSPLOG00000019522) #12	AMIGO3 (ENSPLOG00000019504) #13	RNF123 (ENSPLOG00000019080) #14	MST1 (ENSPLOG00000018941) #15	APEH (ENSPLOG00000018639) #16	BSN (ENSPLOG00000018489) #17	DAG1 (ENSPLOG00000018448) #18	ENSPLOG00000018430	NICN1 (ENSPLOG00000018373) #19	AMT (ENSPLOG00000018117) #20	TCTA (ENSPLOG00000018024) #21	RHOA (ENSPLOG00000017993) #22	GPX1 (ENSPLOG00000017953)	USP4 (ENSPLOG00000017665) #23	C3orf62 (ENSPLOG00000017607)	IHO1 (ENSPLOG00000017527)	C3orf84 (ENSPLOG00000017456) #24	KLHDC8B (ENSPLOG00000017405) #25	CCDC71 (ENSPLOG00000017365) #26	USP19 (ENSPLOG00000016691) #28	QARS1 (ENSPLOG00000016578) #29	QRICH1 (ENSPLOG00000016535) #30	IMPDH2 (ENSPLOG00000016432) #32	NDUFAF3 (ENSPLOG00000016348) #31	DALRD3 (ENSPLOG00000016289) #33	WDR6 (ENSPLOG00000016241) #34	P4HTM (ENSPLOG00000015987) #35
leopard	MODERN SPECIES	68	ENSPPRG00000013171	IP6K1 (ENSPPRG00000013644) #11	GMPPB (ENSPPRG00000014388) #12	AMIGO3 (ENSPPRG00000022195) #13	ENSPPRG00000014892 #14	ENSPPRG00000015422 #14	ENSPPRG00000015877	MST1 (ENSPPRG00000016583) #15	APEH (ENSPPRG00000019437) #16	BSN (ENSPPRG00000020826) #17	DAG1 (ENSPPRG00000022512) #18	ENSPPRG00000014445	NICN1 (ENSPPRG00000025013) #19	AMT (ENSPPRG00000024852) #20	TCTA (ENSPPRG00000024728) #21	RHOA (ENSPPRG00000024656) #22	ENSPPRG00000024456 #23	C3orf62 (ENSPPRG00000024416)	IHO1 (ENSPPRG00000024255)	C3orf84 (ENSPPRG00000024113) #24	KLHDC8B (ENSPPRG00000023840) #25	LAMB2 (ENSPPRG00000023171) #27	USP19 (ENSPPRG00000003739) #28	QARS1 (ENSPPRG00000005221) #29	ENSPPRG00000005505	QRICH1 (ENSPPRG00000005820) #30	IMPDH2 (ENSPPRG00000006003) #32	NDUFAF3 (ENSPPRG00000006073) #31	DALRD3 (ENSPPRG00000006675) #33	WDR6 (ENSPPRG00000007146) #34	ENSPPRG00000007287
Tiger	MODERN SPECIES	281	TRAIP (ENSPTIG00000019439) #7	UBA7 (ENSPTIG00000019402) #8	INKA1 (ENSPTIG00000019398) #9	CDHR4 (ENSPTIG00000019353) #10	IP6K1 (ENSPTIG00000019305) #11	GMPPB (ENSPTIG00000019283) #12	ENSPTIG00000019260 #14	ENSPTIG00000019198 #14	ENSPTIG00000019163	MST1 (ENSPTIG00000019141) #15	APEH (ENSPTIG00000018977) #16	DAG1 (ENSPTIG00000018919) #18	NICN1 (ENSPTIG00000018906) #19	AMT (ENSPTIG00000018699) #20	TCTA (ENSPTIG00000018655) #21	RHOA (ENSPTIG00000018631) #22	GPX1 (ENSPTIG00000018624)	USP4 (ENSPTIG00000018516) #23	C3orf62 (ENSPTIG00000018499)	IHO1 (ENSPTIG00000018424)	C3orf84 (ENSPTIG00000018411) #24	KLHDC8B (ENSPTIG00000018386) #25	LAMB2 (ENSPTIG00000018293) #27	USP19 (ENSPTIG00000018061) #28	QARS1 (ENSPTIG00000017922) #29	QRICH1 (ENSPTIG00000017901) #30	IMPDH2 (ENSPTIG00000017887) #32	NDUFAF3 (ENSPTIG00000017874) #31	DALRD3 (ENSPTIG00000017798) #33	WDR6 (ENSPTIG00000017782) #34	P4HTM (ENSPTIG00000017764) #35
Cat	MODERN SPECIES	1	ENSFCAG00000053086	CAMKV (ENSFCAG00000010683)	TRAIP (ENSFCAG00000010682) #7	INKA1 (ENSFCAG00000010679) #9	UBA7 (ENSFCAG00000010680) #8	IP6K1 (ENSFCAG00000010677) #11	GMPPB (ENSFCAG00000010676) #12	AMIGO3 (ENSFCAG00000010675) #13	MST1 (ENSFCAG00000025772) #15	RNF123 (ENSFCAG00000028315) #14	BSN (ENSFCAG00000031387) #17	DAG1 (ENSFCAG00000043206) #18	NICN1 (ENSFCAG00000009857) #19	AMT (ENSFCAG00000042786) #20	TCTA (ENSFCAG00000025429) #21	RHOA (ENSFCAG00000027456) #22	GPX1 (ENSFCAG00000025038)	USP4 (ENSFCAG00000009853) #23	CA2H3orf62 (ENSFCAG00000025844)	IHO1 (ENSFCAG00000009850)	CA2H3orf84 (ENSFCAG00000023457) #24	KLHDC8B (ENSFCAG00000009849) #25	CCDC71 (ENSFCAG00000039529) #26	LAMB2 (ENSFCAG00000009848) #27	USP19 (ENSFCAG00000009847) #28	QARS1 (ENSFCAG00000009846) #29	QRICH1 (ENSFCAG00000009845) #30	IMPDH2 (ENSFCAG00000009844) #32	NDUFAF3 (ENSFCAG00000009843) #31	DALRD3 (ENSFCAG00000009842) #33	WDR6 (ENSFCAG00000029509) #34
Caniformia	ANCESTRAL SPECIES	4	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00910000147297	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Canidae	DUPLICATION
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES	7	ENSGT00390000014416	ENSGT00940000159987	ENSGT00390000010075	ENSGT00940000167563	ENSGT00510000049326.b.b	ENSGT00940000154668	ENSGT00940000160020	ENSGT00390000006096.a.b	ENSGT00530000063923.a	ENSGT00390000003050	ENSGT00500000044987	ENSGT00940000153432.B	ENSGT00390000004624.a.a	ENSGT00940000158907	ENSGT00390000001442	ENSGT00950000182945.b.b.nb.a #22	ENSGT00940000158207	ENSGT00940000158944	ENSGT00930000151460	ENSGT00950000183129.b.a	ENSGT00950000182802.B.a.a.a.a.i.d.c.a.b	ENSGT00940000153731.a.a	ENSGT00390000016326	ENSGT00940000157646	ENSGT00940000156303	ENSGT00510000047669	ENSGT00940000157072	ENSGT00390000013835	ENSGT00940000156244	ENSGT00940000161247	ENSGT00940000157724
Canis_lupus	ANCESTRAL SPECIES	12	ENSGT00390000011383	ENSGT00390000014416	ENSGT00940000159987	ENSGT00390000010075	ENSGT00510000049326.b.b	ENSGT00940000154668	ENSGT00940000160020	ENSGT00390000006096.a.b	ENSGT00530000063923.a	ENSGT00390000003050	ENSGT00500000044987	ENSGT00940000153432.B	ENSGT00390000004624.a.a	ENSGT00940000158907	ENSGT00390000001442	ENSGT00950000182945.b.b.nb.a #22	ENSGT00940000158207	ENSGT00940000158944	ENSGT00930000151460	ENSGT00950000183129.b.a	ENSGT00950000182802.B.a.a.a.a.i.d.c.a.b	ENSGT00940000153731.a.a	ENSGT00940000160677.b	ENSGT00390000016326	ENSGT00940000157646	ENSGT00390000018085.a.b.b	ENSGT00940000156303	ENSGT00510000047669	ENSGT00940000157072	ENSGT00390000013835	ENSGT00940000156244
Dingo	MODERN SPECIES	324				ENSCAFG00020022509	ENSCAFG00020022510	NIM1K (ENSCAFG00020022511)	HMGCS1 (ENSCAFG00020022512)	CCL28 (ENSCAFG00020022514)	ENSCAFG00020022515	C5orf34 (ENSCAFG00020022516)	ENSCAFG00020022518	PAIP1 (ENSCAFG00020022519)	NNT (ENSCAFG00020022539)	FGF10 (ENSCAFG00020023081)	MRPS30 (ENSCAFG00020023088)	ENSCAFG00020023093 #22	HCN1 (ENSCAFG00020023097)	EMB (ENSCAFG00020023108)	ENSCAFG00020023110	PARP8 (ENSCAFG00020023116)	ENSCAFG00020023152	ISL1 (ENSCAFG00020023153)	ENSCAFG00020023158	ITGA1 (ENSCAFG00020023171)	PELO (ENSCAFG00020023234)	ENSCAFG00020023235	ITGA2 (ENSCAFG00020023241)	MOCS2 (ENSCAFG00020023291)	FST (ENSCAFG00020023298)	ENSCAFG00020023309	ARL15 (ENSCAFG00020023332)
Red fox	MODERN SPECIES	131				ENSVVUG00000025369	ZNF131 (ENSVVUG00000025370)	NIM1K (ENSVVUG00000025384)	HMGCS1 (ENSVVUG00000025389)	CCL28 (ENSVVUG00000025397)	TMEM267 (ENSVVUG00000025399)	CUNH5orf34 (ENSVVUG00000025400)	PAIP1 (ENSVVUG00000025408)	NNT (ENSVVUG00000025440)	ENSVVUG00000025445	FGF10 (ENSVVUG00000025452)	MRPS30 (ENSVVUG00000025454)	ENSVVUG00000025455 #22	HCN1 (ENSVVUG00000025456)	ENSVVUG00000025461	EMB (ENSVVUG00000025462)	PARP8 (ENSVVUG00000025465)	ENSVVUG00000025487	ISL1 (ENSVVUG00000025489)	ENSVVUG00000025496	PELO (ENSVVUG00000025499)	ITGA1 (ENSVVUG00000025501)	ENSVVUG00000025502	ITGA2 (ENSVVUG00000025507)	MOCS2 (ENSVVUG00000025658)	ENSVVUG00000025661	FST (ENSVVUG00000025662)	NDUFS4 (ENSVVUG00000025663)
Canidae	ANCESTRAL SPECIES																	ENSGT00950000182945.b.b.nb.b #22
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00950000182945.b.b.nb.b #22
Dingo	MODERN SPECIES	401	UBA7 (ENSCAFG00020021545) #8	INKA1 (ENSCAFG00020021475) #9	CDHR4 (ENSCAFG00020021450) #10	IP6K1 (ENSCAFG00020021446) #11	GMPPB (ENSCAFG00020021414) #12	AMIGO3 (ENSCAFG00020021410) #13	RNF123 (ENSCAFG00020021203) #14	ENSCAFG00020021156	MST1 (ENSCAFG00020021150) #15	APEH (ENSCAFG00020021126) #16	BSN (ENSCAFG00020021112) #17	DAG1 (ENSCAFG00020021107) #18	NICN1 (ENSCAFG00020021102) #19	AMT (ENSCAFG00020021037) #20	TCTA (ENSCAFG00020021023) #21	ENSCAFG00020021020 #22	GPX1 (ENSCAFG00020021012)	USP4 (ENSCAFG00020021004) #23	C3orf62 (ENSCAFG00020021003)	IHO1 (ENSCAFG00020021001)	C3orf84 (ENSCAFG00020021000) #24	KLHDC8B (ENSCAFG00020020998) #25	LAMB2 (ENSCAFG00020020994) #27	USP19 (ENSCAFG00020020986) #28	QARS1 (ENSCAFG00020020980) #29	QRICH1 (ENSCAFG00020020975) #30	IMPDH2 (ENSCAFG00020020966) #32	NDUFAF3 (ENSCAFG00020020962) #31	DALRD3 (ENSCAFG00020020957) #33	ENSCAFG00020020950	WDR6 (ENSCAFG00020020949) #34
Canidae	ANCESTRAL SPECIES		ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00910000147297	ENSGT00390000001505 #19	ENSGT00940000157524.a #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b.ob #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000171658	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524.a #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b.ob #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34	ENSGT00390000013951.db.a
Dog	MODERN SPECIES	12	ENSCAFG00845023983	CAMKV (ENSCAFG00845024029)	TRAIP (ENSCAFG00845024196) #7	CDHR4 (ENSCAFG00845024488) #8	INKA1 (ENSCAFG00845024927) #9	IP6K1 (ENSCAFG00845024997) #11	GMPPB (ENSCAFG00845025132) #12	RNF123 (ENSCAFG00845025247) #14	AMIGO3 (ENSCAFG00845025496) #13	MST1 (ENSCAFG00845025539) #15	APEH (ENSCAFG00845025730) #16	BSN (ENSCAFG00845025871) #17	DAG1 (ENSCAFG00845025980) #18	AMT (ENSCAFG00845026162) #20	TCTA (ENSCAFG00845026862) #21	RHOA (ENSCAFG00845026916) #22	GPX1 (ENSCAFG00845027003)	USP4 (ENSCAFG00845027080) #23	C3orf62 (ENSCAFG00845027263)	IHO1 (ENSCAFG00845027331)	C20H3orf84 (ENSCAFG00845027426) #24	KLHDC8B (ENSCAFG00845027453) #25	LAMB2 (ENSCAFG00845027640) #27	USP19 (ENSCAFG00845028360) #28	QARS1 (ENSCAFG00845029059) #29	QRICH1 (ENSCAFG00845029132) #30	IMPDH2 (ENSCAFG00845029196) #32	NDUFAF3 (ENSCAFG00845029303) #31	DALRD3 (ENSCAFG00845029364) #33	WDR6 (ENSCAFG00845029474) #34	ENSCAFG00845029540
Red fox	MODERN SPECIES	5	UBA7 (ENSVVUG00000028834) #8	INKA1 (ENSVVUG00000028848) #9	IP6K1 (ENSVVUG00000028850) #11	GMPPB (ENSVVUG00000028851) #12	RNF123 (ENSVVUG00000028858) #14	AMIGO3 (ENSVVUG00000028963) #13	MST1 (ENSVVUG00000028970) #15	APEH (ENSVVUG00000028983) #16	BSN (ENSVVUG00000029026) #17	DAG1 (ENSVVUG00000029028) #18	ENSVVUG00000029029	ENSVVUG00000029030	NICN1 (ENSVVUG00000029031) #19	AMT (ENSVVUG00000029036) #20	TCTA (ENSVVUG00000029052) #21	RHOA (ENSVVUG00000029053) #22	GPX1 (ENSVVUG00000029054)	USP4 (ENSVVUG00000029055) #23	C3orf62 (ENSVVUG00000029056)	CCDC36 (ENSVVUG00000029057)	ENSVVUG00000029059	C3orf84 (ENSVVUG00000029060) #24	KLHDC8B (ENSVVUG00000029061) #25	CCDC71 (ENSVVUG00000029062) #26	LAMB2 (ENSVVUG00000029063) #27	USP19 (ENSVVUG00000029068) #28	QARS1 (ENSVVUG00000029158) #29	QRICH1 (ENSVVUG00000029220) #30	NDUFAF3 (ENSVVUG00000029274) #31	WDR6 (ENSVVUG00000029289) #34	ENSVVUG00000029294
Caniformia_b	DUPLICATION
Caniformia_b	DUPLICATION
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00950000182945.b.b.pb.a #22
Ursidae	ANCESTRAL SPECIES																	ENSGT00950000182945.b.b.pb.a #22
Giant Panda	MODERN SPECIES	577																ENSAMEG00000029495 #22
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b.pb.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Mustelinae	ANCESTRAL SPECIES	10	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b.pb.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Ferret	MODERN SPECIES	238	TRAIP (ENSMPUG00000013365) #7	UBA7 (ENSMPUG00000013373) #8	INKA1 (ENSMPUG00000013382) #9	CDHR4 (ENSMPUG00000013387) #10	IP6K1 (ENSMPUG00000013407) #11	GMPPB (ENSMPUG00000013431) #12	RNF123 (ENSMPUG00000013466) #14	AMIGO3 (ENSMPUG00000019647) #13	MST1 (ENSMPUG00000013611) #15	APEH (ENSMPUG00000013722) #16	BSN (ENSMPUG00000013782) #17	DAG1 (ENSMPUG00000013807) #18	NICN1 (ENSMPUG00000013809) #19	AMT (ENSMPUG00000013810) #20	TCTA (ENSMPUG00000013838) #21	RHOA (ENSMPUG00000013840) #22	GPX1 (ENSMPUG00000013843)	USP4 (ENSMPUG00000013846) #23	IHO1 (ENSMPUG00000013850)	C3orf84 (ENSMPUG00000013861) #24	KLHDC8B (ENSMPUG00000013869) #25	CCDC71 (ENSMPUG00000019649) #26	LAMB2 (ENSMPUG00000013872) #27	USP19 (ENSMPUG00000014117) #28	QARS1 (ENSMPUG00000014198) #29	QRICH1 (ENSMPUG00000014264) #30	NDUFAF3 (ENSMPUG00000014271) #31	DALRD3 (ENSMPUG00000014288) #33	WDR6 (ENSMPUG00000014318) #34	ENSMPUG00000014321	ARIH2 (ENSMPUG00000014344) #36
Ursidae	ANCESTRAL SPECIES	11	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b.pb.b #22	ENSGT00940000156150.l	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Giant Panda	MODERN SPECIES	14	TRAIP (ENSAMEG00000012159) #7	INKA1 (ENSAMEG00000012287) #9	UBA7 (ENSAMEG00000012193) #8	CDHR4 (ENSAMEG00000012290) #10	IP6K1 (ENSAMEG00000012301) #11	GMPPB (ENSAMEG00000012315) #12	AMIGO3 (ENSAMEG00000012391) #13	RNF123 (ENSAMEG00000012331) #14	MST1 (ENSAMEG00000012393) #15	APEH (ENSAMEG00000012459) #16	BSN (ENSAMEG00000012523) #17	DAG1 (ENSAMEG00000024430) #18	NICN1 (ENSAMEG00000012544) #19	AMT (ENSAMEG00000012551) #20	ENSAMEG00000012580 #21	RHOA (ENSAMEG00000012584) #22	GPX1 (ENSAMEG00000012590)	USP4 (ENSAMEG00000012591) #23	C3orf62 (ENSAMEG00000012680)	IHO1 (ENSAMEG00000012682)	C3orf84 (ENSAMEG00000012687) #24	KLHDC8B (ENSAMEG00000030033) #25	CCDC71 (ENSAMEG00000020173) #26	LAMB2 (ENSAMEG00000012708) #27	USP19 (ENSAMEG00000012785) #28	QARS1 (ENSAMEG00000012838) #29	QRICH1 (ENSAMEG00000012907) #30	IMPDH2 (ENSAMEG00000012929) #32	NDUFAF3 (ENSAMEG00000012966) #31	DALRD3 (ENSAMEG00000012976) #33	WDR6 (ENSAMEG00000013002) #34
Ursus	ANCESTRAL SPECIES	5	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b.pb.b #22	ENSGT00940000156150.l	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Polar bear	MODERN SPECIES	255	CAMKV (ENSUMAG00000022154)	TRAIP (ENSUMAG00000022188) #7	UBA7 (ENSUMAG00000022195) #8	INKA1 (ENSUMAG00000022202) #9	CDHR4 (ENSUMAG00000022205) #10	IP6K1 (ENSUMAG00000022211) #11	GMPPB (ENSUMAG00000022219) #12	RNF123 (ENSUMAG00000022315) #14	MST1 (ENSUMAG00000022561) #15	APEH (ENSUMAG00000022664) #16	ENSUMAG00000022817 #17	DAG1 (ENSUMAG00000022818) #18	NICN1 (ENSUMAG00000022819) #19	AMT (ENSUMAG00000022820) #20	TCTA (ENSUMAG00000022824) #21	RHOA (ENSUMAG00000022826) #22	GPX1 (ENSUMAG00000022827)	ENSUMAG00000022834 #23	USP4 (ENSUMAG00000022843) #23	C3orf62 (ENSUMAG00000022863)	IHO1 (ENSUMAG00000022867)	C3orf84 (ENSUMAG00000022882) #24	KLHDC8B (ENSUMAG00000022885) #25	CCDC71 (ENSUMAG00000022889) #26	LAMB2 (ENSUMAG00000022957) #27	USP19 (ENSUMAG00000023181) #28	QARS1 (ENSUMAG00000023208) #29	QRICH1 (ENSUMAG00000023411) #30	IMPDH2 (ENSUMAG00000023416) #32	NDUFAF3 (ENSUMAG00000023429) #31	ENSUMAG00000023436 #33
American black bear	MODERN SPECIES	8382																ENSUAMG00000005284 #22
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00950000182945.b.b.qb #22
Ursidae	ANCESTRAL SPECIES																	ENSGT00950000182945.b.b.qb #22
Giant Panda	MODERN SPECIES	778																ENSAMEG00000029746 #22
Atlantogenata	ANCESTRAL SPECIES	30	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000163656	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33
Xenarthra	ANCESTRAL SPECIES		ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000162824 #10	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34	ENSGT00390000014570 #35
Armadillo	MODERN SPECIES	864	CAMKV (ENSDNOG00000036907)	TRAIP (ENSDNOG00000035213) #7	UBA7 (ENSDNOG00000005153) #8	INKA1 (ENSDNOG00000024710) #9	CDHR4 (ENSDNOG00000044013) #10	IP6K1 (ENSDNOG00000045127) #11	GMPPB (ENSDNOG00000012973) #12	AMIGO3 (ENSDNOG00000037102) #13	MST1 (ENSDNOG00000003406) #15	APEH (ENSDNOG00000031643) #16	BSN (ENSDNOG00000047457) #17	DAG1 (ENSDNOG00000016917) #18	NICN1 (ENSDNOG00000018341) #19	AMT (ENSDNOG00000002402) #20	TCTA (ENSDNOG00000002400) #21	RHOA (ENSDNOG00000046934) #22	USP4 (ENSDNOG00000012797) #23	C3orf62 (ENSDNOG00000019586)	IHO1 (ENSDNOG00000013880)	C3orf84 (ENSDNOG00000043752) #24	KLHDC8B (ENSDNOG00000032781) #25	ENSDNOG00000044903 #26	ENSDNOG00000000033 #27	ENSDNOG00000031599	QARS1 (ENSDNOG00000014157) #29	QRICH1 (ENSDNOG00000014130) #30	IMPDH2 (ENSDNOG00000014105) #32	NDUFAF3 (ENSDNOG00000014096) #31	DALRD3 (ENSDNOG00000041605) #33	WDR6 (ENSDNOG00000033276) #34	P4HTM (ENSDNOG00000014050) #35
Afrotheria	ANCESTRAL SPECIES	29	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000164381	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Afrotheria_a	ANCESTRAL SPECIES	30	ENSGT00390000007696 #7	ENSGT00940000161447 #8	ENSGT00530000063849.A #9	ENSGT00940000164381	ENSGT00940000157802 #11	ENSGT00940000158909 #12	ENSGT00950000183146.b #13	ENSGT00940000155781 #14	ENSGT00940000159461 #15	ENSGT00390000013172 #16	ENSGT00620000087961.a.b.a.a.a.b.f #17	ENSGT00390000008429 #18	ENSGT00390000001505 #19	ENSGT00940000157524 #20	ENSGT00390000004490 #21	ENSGT00950000182945.b.b #22	ENSGT00940000156150	ENSGT00940000156645 #23	ENSGT00390000000252	ENSGT00390000012418	ENSGT00390000002177 #24	ENSGT00940000160815 #25	ENSGT00940000155306.a #26	ENSGT00940000156060 #27	ENSGT00940000159085 #28	ENSGT00550000074972 #29	ENSGT00940000155241 #30	ENSGT00940000157726 #32	ENSGT00390000018312 #31	ENSGT00390000014621 #33	ENSGT00420000029923 #34
Elephant	MODERN SPECIES	49	TRAIP (ENSLAFG00000006710) #7	UBA7 (ENSLAFG00000006704) #8	INKA1 (ENSLAFG00000021603) #9	ENSLAFG00000032196	IP6K1 (ENSLAFG00000013133) #11	GMPPB (ENSLAFG00000013128) #12	RNF123 (ENSLAFG00000013110) #14	AMIGO3 (ENSLAFG00000013126) #13	MST1 (ENSLAFG00000003505) #15	APEH (ENSLAFG00000003497) #16	BSN (ENSLAFG00000002847) #17	DAG1 (ENSLAFG00000011041) #18	NICN1 (ENSLAFG00000029153) #19	AMT (ENSLAFG00000009731) #20	TCTA (ENSLAFG00000009728) #21	RHOA (ENSLAFG00000009726) #22	GPX1 (ENSLAFG00000009724)	USP4 (ENSLAFG00000018507) #23	C3orf62 (ENSLAFG00000018504)	IHO1 (ENSLAFG00000018499)	C3orf84 (ENSLAFG00000027656) #24	KLHDC8B (ENSLAFG00000005090) #25	CCDC71 (ENSLAFG00000005096) #26	LAMB2 (ENSLAFG00000012871) #27	USP19 (ENSLAFG00000012851) #28	QARS1 (ENSLAFG00000012841) #29	QRICH1 (ENSLAFG00000012836) #30	IMPDH2 (ENSLAFG00000012829) #32	NDUFAF3 (ENSLAFG00000031083) #31	DALRD3 (ENSLAFG00000012826) #33	WDR6 (ENSLAFG00000012822) #34
Hyrax	MODERN SPECIES	9514																RHOA (ENSPCAG00000009699) #22	GPX1 (ENSPCAG00000009720)