Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.b #22
Gnathostomata	ANCESTRAL SPECIES	501													ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00390000009688 #25	ENSGT00590000083139 #26
Euteleostomi	ANCESTRAL SPECIES	10	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00940000162520	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000161329	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31
Sarcopterygii	ANCESTRAL SPECIES	10	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000163656	ENSGT00940000177852	ENSGT00940000162520	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000161329	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35
Tetrapoda	ANCESTRAL SPECIES	4	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00940000162520	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #33	ENSGT00940000164901	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Amniota	ANCESTRAL SPECIES	1	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #33	ENSGT00940000164901	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Mammalia	ANCESTRAL SPECIES	38	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185
Theria	ANCESTRAL SPECIES	35	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Boreoeutheria	ANCESTRAL SPECIES	15	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Primates	ANCESTRAL SPECIES	14	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Haplorrhini	ANCESTRAL SPECIES	15	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00900000143745	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00900000143745	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Platyrrhini	ANCESTRAL SPECIES	45	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905.n.a #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00900000143745	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Cebidae	ANCESTRAL SPECIES	40	ENSGT00470000042500	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905.n.a #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00900000143745	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Cebidae_a	ANCESTRAL SPECIES	46	ENSGT00470000042500	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905.n.a #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00900000143745	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00950000182926.b.d.c.a.g.a #29	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Capuchin	MODERN SPECIES	1	VSNL1 (ENSCCAG00000027421) #7	SMC6 (ENSCCAG00000027451) #8	GEN1 (ENSCCAG00000031121) #9	MSGN1 (ENSCCAG00000020077) #10	KCNS3 (ENSCCAG00000020195) #11	RDH14 (ENSCCAG00000027491) #12	NT5C1B (ENSCCAG00000020565) #13	OSR1 (ENSCCAG00000029161) #14	TTC32 (ENSCCAG00000025284) #15	WDR35 (ENSCCAG00000030486) #16	MATN3 (ENSCCAG00000033118) #17	LAPTM4A (ENSCCAG00000029231) #18	ENSCCAG00000019764 #19	SDC1 (ENSCCAG00000031573) #20	PUM2 (ENSCCAG00000037035) #21	RHOB (ENSCCAG00000018485) #22	HS1BP3 (ENSCCAG00000028038) #23	GDF7 (ENSCCAG00000035529) #24	LDAH (ENSCCAG00000033829) #25	APOB (ENSCCAG00000021140) #26	KLHL29 (ENSCCAG00000036850) #27	ATAD2B (ENSCCAG00000031116) #28	ENSCCAG00000025817 #29	ENSCCAG00000021209 #30	UBXN2A (ENSCCAG00000025921) #31	MFSD2B (ENSCCAG00000026318) #32	WDCP (ENSCCAG00000035342) #33	FKBP1B (ENSCCAG00000003872) #34	SF3B6 (ENSCCAG00000036653) #35	TP53I3 (ENSCCAG00000032310) #36	PFN4 (ENSCCAG00000028499) #37
Bolivian squirrel monkey	MODERN SPECIES	113	VSNL1 (ENSSBOG00000029668) #7	SMC6 (ENSSBOG00000020240) #8	GEN1 (ENSSBOG00000031046) #9	MSGN1 (ENSSBOG00000010657) #10	KCNS3 (ENSSBOG00000010067) #11	RDH14 (ENSSBOG00000028443) #12	NT5C1B (ENSSBOG00000030055) #13	ENSSBOG00000023931	OSR1 (ENSSBOG00000023175) #14	TTC32 (ENSSBOG00000024543) #15	WDR35 (ENSSBOG00000030509) #16	MATN3 (ENSSBOG00000027840) #17	LAPTM4A (ENSSBOG00000031549) #18	ENSSBOG00000029288 #20	PUM2 (ENSSBOG00000022007) #21	RHOB (ENSSBOG00000013056) #22	ENSSBOG00000032320	HS1BP3 (ENSSBOG00000023433) #23	GDF7 (ENSSBOG00000022327) #24	LDAH (ENSSBOG00000031409) #25	APOB (ENSSBOG00000008834) #26	KLHL29 (ENSSBOG00000021000) #27	ATAD2B (ENSSBOG00000032583) #28	ENSSBOG00000031186 #29	UBXN2A (ENSSBOG00000023884) #31	MFSD2B (ENSSBOG00000022320) #32	ENSSBOG00000029165 #33	FKBP1B (ENSSBOG00000020385) #34	SF3B6 (ENSSBOG00000002914) #35	TP53I3 (ENSSBOG00000036061) #36	ENSSBOG00000029308 #36
Marmoset	MODERN SPECIES	5	SMC6 (ENSCJAG00000007282) #8	GEN1 (ENSCJAG00000007327) #9	MSGN1 (ENSCJAG00000032633) #10	KCNS3 (ENSCJAG00000007354) #11	NT5C1B (ENSCJAG00000007361) #13	ENSCJAG00000022933	ENSCJAG00000083040	OSR1 (ENSCJAG00000007379) #14	TTC32 (ENSCJAG00000065690) ##15	WDR35 (ENSCJAG00000007386) #16	MATN3 (ENSCJAG00000007406) #17	ENSCJAG00000071467 #18	SDC1 (ENSCJAG00000039283) #20	PUM2 (ENSCJAG00000007450) #21	ENSCJAG00000086921	RHOB (ENSCJAG00000077207) #22	ENSCJAG00000022935	HS1BP3 (ENSCJAG00000007517) #23	GDF7 (ENSCJAG00000007529) #24	LDAH (ENSCJAG00000007531) #25	APOB (ENSCJAG00000007533) #26	ENSCJAG00000043360	TDRD15 (ENSCJAG00000007582)	ENSCJAG00000062913	KLHL29 (ENSCJAG00000007588) #27	ATAD2B (ENSCJAG00000007628) #28	UBXN2A (ENSCJAG00000007665) #31	MFSD2B (ENSCJAG00000007691) #32	WDCP (ENSCJAG00000007696) #33	ENSCJAG00000083698 #34	SF3B6 (ENSCJAG00000007716) #35
Mas night monkey	MODERN SPECIES	950													SDC1 (ENSANAG00000032410) #20	ENSANAG00000019275	PUM2 (ENSANAG00000021807) #21	RHOB (ENSANAG00000018114) #22	HS1BP3 (ENSANAG00000028913) #23	GDF7 (ENSANAG00000035417) #24	LDAH (ENSANAG00000022004) #25	ENSANAG00000031943	APOB (ENSANAG00000032282) #26	TDRD15 (ENSANAG00000026523)	ENSANAG00000008532	KLHL29 (ENSANAG00000035261) #27	ATAD2B (ENSANAG00000024449) #28	UBXN2A (ENSANAG00000031177) #31	MFSD2B (ENSANAG00000035631) #32	WDCP (ENSANAG00000025318) #33	FKBP1B (ENSANAG00000028933) #34	SF3B6 (ENSANAG00000027284) #35	TP53I3 (ENSANAG00000032220) #36
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00900000143745	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Hominoidea	ANCESTRAL SPECIES	18	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Hominidae	ANCESTRAL SPECIES	19	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00550000076422	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	18	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00910000147240	ENSGT00940000164653	ENSGT00910000147230	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00550000076422	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Gorilla	MODERN SPECIES	14	GEN1 (ENSGGOG00000012157) #9	MSGN1 (ENSGGOG00000012168) #10	KCNS3 (ENSGGOG00000000972) #11	NT5C1B (ENSGGOG00000014980) #13	OSR1 (ENSGGOG00000016877) #14	ENSGGOG00000037043	TTC32 (ENSGGOG00000009777) #15	WDR35 (ENSGGOG00000009782) #16	MATN3 (ENSGGOG00000009798) #17	LAPTM4A (ENSGGOG00000027710) #18	SDC1 (ENSGGOG00000041852) #20	ENSGGOG00000027238	ENSGGOG00000040988	ENSGGOG00000037272	PUM2 (ENSGGOG00000011374) #21	RHOB (ENSGGOG00000042542) #22	GDF7 (ENSGGOG00000000225) #24	LDAH (ENSGGOG00000000226) #25	APOB (ENSGGOG00000005179) #26	TDRD15 (ENSGGOG00000026710)	ENSGGOG00000024059	KLHL29 (ENSGGOG00000013889) #27	ATAD2B (ENSGGOG00000006027) #28	UBXN2A (ENSGGOG00000002445) #31	ENSGGOG00000036282	MFSD2B (ENSGGOG00000007752) #32	WDCP (ENSGGOG00000015146) #33	FKBP1B (ENSGGOG00000044101) #34	SF3B6 (ENSGGOG00000040806) #35	TP53I3 (ENSGGOG00000040915) #36	PFN4 (ENSGGOG00000028452) #37
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00910000147240	ENSGT00940000164653	ENSGT00910000147230	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00550000076422	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Human	MODERN SPECIES	11	VSNL1 (ENSG00000163032) #7	SMC6 (ENSG00000163029) #8	GEN1 (ENSG00000178295) #9	MSGN1 (ENSG00000151379) #10	KCNS3 (ENSG00000170745) #11	RDH14 (ENSG00000240857) #12	NT5C1B-RDH14 (ENSG00000250741)	NT5C1B (ENSG00000185013) #13	OSR1 (ENSG00000143867) #14	TTC32 (ENSG00000183891) #15	WDR35 (ENSG00000118965) #16	MATN3 (ENSG00000132031) #17	LAPTM4A (ENSG00000068697) #18	SDC1 (ENSG00000115884) #20	PUM2 (ENSG00000055917) #21	RHOB (ENSG00000143878) #22	HS1BP3 (ENSG00000118960) #23	GDF7 (ENSG00000143869) #24	LDAH (ENSG00000118961) #25	APOB (ENSG00000084674) #26	TDRD15 (ENSG00000218819)	KLHL29 (ENSG00000119771) #27	ATAD2B (ENSG00000119778) #28	UBXN2A (ENSG00000173960) #31	MFSD2B (ENSG00000205639) #32	WDCP (ENSG00000163026) #33	FKBP1B (ENSG00000119782) #34	SF3B6 (ENSG00000115128) #35	FAM228B (ENSG00000219626)	TP53I3 (ENSG00000115129) #36	PFN4 (ENSG00000176732) #37
Pan	ANCESTRAL SPECIES	17	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00910000147240	ENSGT00940000164653	ENSGT00910000147230	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00900000143745	ENSGT00390000002743.h	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00550000076422	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35
Bonobo	MODERN SPECIES	14	MSGN1 (ENSPPAG00000033217) #10	KCNS3 (ENSPPAG00000000574) #11	ENSPPAG00000033270 #12	NT5C1B (ENSPPAG00000030956) #13	OSR1 (ENSPPAG00000032777) #14	ENSPPAG00000034662	TTC32 (ENSPPAG00000035271) #15	WDR35 (ENSPPAG00000037901) #16	MATN3 (ENSPPAG00000035472) #17	LAPTM4A (ENSPPAG00000037069) #18	SDC1 (ENSPPAG00000037638) #20	ENSPPAG00000037572	ENSPPAG00000039090	PUM2 (ENSPPAG00000023095) #21	ENSPPAG00000039825	RHOB (ENSPPAG00000023187) #22	ENSPPAG00000029523	ENSPPAG00000008002	HS1BP3 (ENSPPAG00000043977) #23	ENSPPAG00000041145 #24	LDAH (ENSPPAG00000016359) #25	APOB (ENSPPAG00000011975) #26	TDRD15 (ENSPPAG00000032970)	ENSPPAG00000025710	KLHL29 (ENSPPAG00000030367) #27	ATAD2B (ENSPPAG00000033306) #28	UBXN2A (ENSPPAG00000037849) #31	MFSD2B (ENSPPAG00000028339) #32	WDCP (ENSPPAG00000030779) #33	FKBP1B (ENSPPAG00000035059) #34	SF3B6 (ENSPPAG00000027816) #35
Chimpanzee	MODERN SPECIES	14	GEN1 (ENSPTRG00000011678) #9	MSGN1 (ENSPTRG00000011679) #10	KCNS3 (ENSPTRG00000011680) #11	NT5C1B (ENSPTRG00000011681) #13	OSR1 (ENSPTRG00000011683) #14	ENSPTRG00000039202	ENSPTRG00000045822	TTC32 (ENSPTRG00000011685) #15	WDR35 (ENSPTRG00000011686) #16	MATN3 (ENSPTRG00000011689) #17	LAPTM4A (ENSPTRG00000011690) #18	SDC1 (ENSPTRG00000044887) #20	ENSPTRG00000043608	ENSPTRG00000050463	PUM2 (ENSPTRG00000011692) #21	RHOB (ENSPTRG00000046722) #22	ENSPTRG00000052538	ENSPTRG00000016906	HS1BP3 (ENSPTRG00000011696) #23	GDF7 (ENSPTRG00000011697) #24	LDAH (ENSPTRG00000011698) #25	APOB (ENSPTRG00000011699) #26	TDRD15 (ENSPTRG00000024174)	ENSPTRG00000048960	KLHL29 (ENSPTRG00000011701) #27	ATAD2B (ENSPTRG00000011702) #28	UBXN2A (ENSPTRG00000011705) #31	MFSD2B (ENSPTRG00000030551) #32	WDCP (ENSPTRG00000011707) #33	FKBP1B (ENSPTRG00000011708) #34	SF3B6 (ENSPTRG00000011709) #35
Orangutan	MODERN SPECIES	14	RAD51AP2 (ENSPPYG00000012632)	VSNL1 (ENSPPYG00000012631) #7	SMC6 (ENSPPYG00000012630) #8	GEN1 (ENSPPYG00000012629) #9	MSGN1 (ENSPPYG00000012628) #10	KCNS3 (ENSPPYG00000012627) #11	ENSPPYG00000012626 #13	ENSPPYG00000012624 #14	ENSPPYG00000012623 #15	ENSPPYG00000036668	WDR35 (ENSPPYG00000012622) #16	MATN3 (ENSPPYG00000012621) #17	LAPTM4A (ENSPPYG00000012620) #18	SDC1 (ENSPPYG00000032047) #20	PUM2 (ENSPPYG00000012617) #21	RHOB (ENSPPYG00000012616) #22	HS1BP3 (ENSPPYG00000012615) #23	GDF7 (ENSPPYG00000035678) #24	LDAH (ENSPPYG00000037972) #25	APOB (ENSPPYG00000012612) #26	TDRD15 (ENSPPYG00000031614)	ENSPPYG00000012611	KLHL29 (ENSPPYG00000012610) #27	ATAD2B (ENSPPYG00000012609) #28	UBXN2A (ENSPPYG00000012607) #31	MFSD2B (ENSPPYG00000012606) #32	WDCP (ENSPPYG00000012605) #33	FKBP1B (ENSPPYG00000012604) #34	SF3B6 (ENSPPYG00000036931) #35	TP53I3 (ENSPPYG00000012602) #36	ENSPPYG00000041124
Gibbon	MODERN SPECIES	9	MSGN1 (ENSNLEG00000018810) #10	KCNS3 (ENSNLEG00000001834) #11	RDH14 (ENSNLEG00000028221) #12	NT5C1B (ENSNLEG00000001850) #13	ENSNLEG00000033627	OSR1 (ENSNLEG00000002004) #14	ENSNLEG00000028344	TTC32 (ENSNLEG00000030350) #15	WDR35 (ENSNLEG00000002032) #16	MATN3 (ENSNLEG00000002247) #17	LAPTM4A (ENSNLEG00000002305) #18	SDC1 (ENSNLEG00000031569) #20	ENSNLEG00000029549	ENSNLEG00000002506	PUM2 (ENSNLEG00000002509) #21	RHOB (ENSNLEG00000030179) #22	ENSNLEG00000030630	HS1BP3 (ENSNLEG00000002614) #23	GDF7 (ENSNLEG00000002638) #24	LDAH (ENSNLEG00000032022) #25	APOB (ENSNLEG00000000598) #26	ENSNLEG00000028338	KLHL29 (ENSNLEG00000000686) #27	ATAD2B (ENSNLEG00000000713) #28	ENSNLEG00000033640	UBXN2A (ENSNLEG00000000751) #31	MFSD2B (ENSNLEG00000000769) #32	WDCP (ENSNLEG00000000787) #33	FKBP1B (ENSNLEG00000000800) #34	ENSNLEG00000000815 #35	TP53I3 (ENSNLEG00000000833) #36
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00910000147240	ENSGT00940000153340.B.k.b	ENSGT00910000147230	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00900000143745	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Rhinopithecus	ANCESTRAL SPECIES	47	ENSGT00950000183117.b	ENSGT00940000161541	ENSGT00670000098076.i.a.b.g.b	ENSGT01030000234626.A.b.o.b	ENSGT00940000154677.g.a	ENSGT00530000063834.e.b	ENSGT00940000156975.u	ENSGT00390000003860.h.b	ENSGT00940000153739.a.b	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459	ENSGT00950000182802.A.b	ENSGT00390000016811	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581
Golden snub-nosed monkey	MODERN SPECIES	2393	DRC1 (ENSRROG00000045724)	SELENOI (ENSRROG00000030657)	ADGRF3 (ENSRROG00000037215)	ENSRROG00000036092	HADHB (ENSRROG00000025585)	HADHA (ENSRROG00000032860)	GAREM2 (ENSRROG00000034425)	RAB10 (ENSRROG00000028647)	KIF3C (ENSRROG00000045700)	ENSRROG00000000064	ASXL2 (ENSRROG00000034489)	ENSRROG00000041965	DNMT3A (ENSRROG00000033151)	ENSRROG00000002529	POMC (ENSRROG00000045388)	RHOB (ENSRROG00000027959) #22	HS1BP3 (ENSRROG00000045342) #23	GDF7 (ENSRROG00000032206) #24	LDAH (ENSRROG00000042894) #25	APOB (ENSRROG00000034792) #26	TDRD15 (ENSRROG00000012190)
Black snub-nosed monkey	MODERN SPECIES	560	ENSRBIG00000010956	HADHB (ENSRBIG00000024676)	HADHA (ENSRBIG00000030017)	GAREM2 (ENSRBIG00000030250)	RAB10 (ENSRBIG00000044561)	ENSRBIG00000036827	KIF3C (ENSRBIG00000018579)	ENSRBIG00000038397	ENSRBIG00000036540	ASXL2 (ENSRBIG00000030906)	ENSRBIG00000033599	DNMT3A (ENSRBIG00000031793)	ENSRBIG00000029807	POMC (ENSRBIG00000014218)	ENSRBIG00000022710	RHOB (ENSRBIG00000023783) #22	HS1BP3 (ENSRBIG00000031881) #23	GDF7 (ENSRBIG00000031200) #24	ENSRBIG00000038314	LDAH (ENSRBIG00000039351) #25	APOB (ENSRBIG00000029398) #26	TDRD15 (ENSRBIG00000029133)
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00900000143745	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Vervet Monkey	MODERN SPECIES	5	RAD51AP2 (ENSCSAG00000007907)	VSNL1 (ENSCSAG00000007914) #7	SMC6 (ENSCSAG00000007925) #8	GEN1 (ENSCSAG00000007952) #9	MSGN1 (ENSCSAG00000000377) #10	KCNS3 (ENSCSAG00000000378) #11	RDH14 (ENSCSAG00000007969) #12	NT5C1B (ENSCSAG00000007999) #13	OSR1 (ENSCSAG00000008012) #14	TTC32 (ENSCSAG00000008028) #15	WDR35 (ENSCSAG00000008051) #16	MATN3 (ENSCSAG00000008064) #17	LAPTM4A (ENSCSAG00000008071) #18	SDC1 (ENSCSAG00000008077) #20	PUM2 (ENSCSAG00000008087) #21	RHOB (ENSCSAG00000000379) #22	HS1BP3 (ENSCSAG00000008096) #23	GDF7 (ENSCSAG00000008108) #24	LDAH (ENSCSAG00000008123) #25	APOB (ENSCSAG00000008169) #26	TDRD15 (ENSCSAG00000000380)	ENSCSAG00000008205	KLHL29 (ENSCSAG00000008250) #27	ATAD2B (ENSCSAG00000008290) #28	UBXN2A (ENSCSAG00000008300) #31	MFSD2B (ENSCSAG00000008345) #32	WDCP (ENSCSAG00000008372) #33	FKBP1B (ENSCSAG00000008381) #34	SF3B6 (ENSCSAG00000008390) #35	TP53I3 (ENSCSAG00000008398) #36	PFN4 (ENSCSAG00000008406) #37
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT01100000264019	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00900000143745	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Macaca	ANCESTRAL SPECIES	17	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT01100000264019	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092.c #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Pig-tailed macaque	MODERN SPECIES	561	GEN1 (ENSMNEG00000041505) #9	MSGN1 (ENSMNEG00000009838) #10	KCNS3 (ENSMNEG00000010748) #11	RDH14 (ENSMNEG00000042523) #12	NT5C1B (ENSMNEG00000031824) #13	OSR1 (ENSMNEG00000024040) #14	ENSMNEG00000040736	ENSMNEG00000000256	TTC32 (ENSMNEG00000032654) #15	WDR35 (ENSMNEG00000043506) #16	MATN3 (ENSMNEG00000040055) #17	LAPTM4A (ENSMNEG00000030721) #18	SDC1 (ENSMNEG00000037009) #20	ENSMNEG00000031627	PUM2 (ENSMNEG00000039659) #21	RHOB (ENSMNEG00000004093) #22	ENSMNEG00000035256	HS1BP3 (ENSMNEG00000042432) #23	GDF7 (ENSMNEG00000036625) #24	LDAH (ENSMNEG00000037298) #25	APOB (ENSMNEG00000041817) #26	TDRD15 (ENSMNEG00000018389)	KLHL29 (ENSMNEG00000040600) #27	ATAD2B (ENSMNEG00000040701) #28	UBXN2A (ENSMNEG00000039344) #31	MFSD2B (ENSMNEG00000042041) #32	WDCP (ENSMNEG00000043270) #33	FKBP1B (ENSMNEG00000044742) #34	SF3B6 (ENSMNEG00000029050) #35	TP53I3 (ENSMNEG00000040818) #36	PFN4 (ENSMNEG00000039662) #37
Macaca_a	ANCESTRAL SPECIES	15	ENSGT00470000042500	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT01100000264019	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092.c #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT01100000263765.a.a.a.b	ENSGT00390000017067 #37
Crab-eating macaque	MODERN SPECIES	4	KCNS3 (ENSMFAG00000007411) #11	NT5C1B (ENSMFAG00000002988) #13	ENSMFAG00000064231	ENSMFAG00000051219	ENSMFAG00000065687	ENSMFAG00000059615	OSR1 (ENSMFAG00000039189) #14	TTC32 (ENSMFAG00000040343) #15	WDR35 (ENSMFAG00000034406) #16	MATN3 (ENSMFAG00000043379) #17	ENSMFAG00000049571	LAPTM4A (ENSMFAG00000036772) #18	ENSMFAG00000064406 #20	ENSMFAG00000043647	PUM2 (ENSMFAG00000000492) #21	RHOB (ENSMFAG00000030406) #22	HS1BP3 (ENSMFAG00000005189) #23	GDF7 (ENSMFAG00000049809) #24	ENSMFAG00000052727	LDAH (ENSMFAG00000036499) #25	ENSMFAG00000042760	APOB (ENSMFAG00000037483) #26	ENSMFAG00000060195	ENSMFAG00000051328	ENSMFAG00000064985	KLHL29 (ENSMFAG00000002617) #27	ATAD2B (ENSMFAG00000045919) #28	UBXN2A (ENSMFAG00000038617) #31	MFSD2B (ENSMFAG00000031201) #32	WDCP (ENSMFAG00000031254) #33	FKBP1B (ENSMFAG00000003240) #34
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT01100000264019	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00900000143745	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Olive baboon	MODERN SPECIES	5	RAD51AP2 (ENSPANG00000022532)	ENSPANG00000022533 #7	SMC6 (ENSPANG00000018608) #8	GEN1 (ENSPANG00000008635) #9	MSGN1 (ENSPANG00000004064) #10	KCNS3 (ENSPANG00000010367) #11	RDH14 (ENSPANG00000007663) #12	OSR1 (ENSPANG00000045188) #14	ENSPANG00000033126	TTC32 (ENSPANG00000015095) #15	WDR35 (ENSPANG00000019305) #16	MATN3 (ENSPANG00000019588) #17	LAPTM4A (ENSPANG00000011260) #18	ENSPANG00000033560	PUM2 (ENSPANG00000009393) #21	RHOB (ENSPANG00000016884) #22	HS1BP3 (ENSPANG00000008436) #23	GDF7 (ENSPANG00000015811) #24	LDAH (ENSPANG00000017330) #25	APOB (ENSPANG00000015810) #26	TDRD15 (ENSPANG00000009392)	ENSPANG00000044101	ENSPANG00000040985	KLHL29 (ENSPANG00000022340) #27	ATAD2B (ENSPANG00000021884) #28	UBXN2A (ENSPANG00000013688) #31	MFSD2B (ENSPANG00000005498) #32	WDCP (ENSPANG00000024219) #33	FKBP1B (ENSPANG00000031212) #34	SF3B6 (ENSPANG00000021963) #35	TP53I3 (ENSPANG00000019585) #36
Cercopithecinae_d	ANCESTRAL SPECIES	23	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT01100000264019	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00900000143745	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Sooty mangabey	MODERN SPECIES	542	GEN1 (ENSCATG00000002261) #9	MSGN1 (ENSCATG00000020832) #10	KCNS3 (ENSCATG00000019098) #11	RDH14 (ENSCATG00000040055) #12	NT5C1B (ENSCATG00000030226) #13	OSR1 (ENSCATG00000041386) #14	ENSCATG00000035076	ENSCATG00000035517	TTC32 (ENSCATG00000043877) #15	WDR35 (ENSCATG00000043847) #16	MATN3 (ENSCATG00000038685) #17	LAPTM4A (ENSCATG00000036860) #18	SDC1 (ENSCATG00000044796) #20	ENSCATG00000041330	PUM2 (ENSCATG00000043826) #21	RHOB (ENSCATG00000021066) #22	ENSCATG00000037321	HS1BP3 (ENSCATG00000038867) #23	GDF7 (ENSCATG00000015865) #24	LDAH (ENSCATG00000025214) #25	APOB (ENSCATG00000025709) #26	TDRD15 (ENSCATG00000014633)	KLHL29 (ENSCATG00000037112) #27	ENSCATG00000036009 #29	ATAD2B (ENSCATG00000035587) #28	UBXN2A (ENSCATG00000007176) #31	MFSD2B (ENSCATG00000040488) #32	WDCP (ENSCATG00000030463) #33	FKBP1B (ENSCATG00000016638) #34	SF3B6 (ENSCATG00000030936) #35	TP53I3 (ENSCATG00000040448) #36
Drill	MODERN SPECIES	273	VSNL1 (ENSMLEG00000009493) #7	SMC6 (ENSMLEG00000038093) #8	GEN1 (ENSMLEG00000037009) #9	MSGN1 (ENSMLEG00000016060) #10	KCNS3 (ENSMLEG00000024480) #11	NT5C1B (ENSMLEG00000032260) #13	OSR1 (ENSMLEG00000036388) #14	ENSMLEG00000035262	TTC32 (ENSMLEG00000034466) #15	WDR35 (ENSMLEG00000042194) #16	MATN3 (ENSMLEG00000028366) #17	LAPTM4A (ENSMLEG00000011616) #18	SDC1 (ENSMLEG00000030457) #20	ENSMLEG00000041181	PUM2 (ENSMLEG00000039243) #21	RHOB (ENSMLEG00000014328) #22	HS1BP3 (ENSMLEG00000036114) #23	GDF7 (ENSMLEG00000030590) #24	LDAH (ENSMLEG00000032951) #25	APOB (ENSMLEG00000034887) #26
Tarsier	MODERN SPECIES	6930															ENSTSYG00000036168	RHOB (ENSTSYG00000026775) #22	ENSTSYG00000028509	HS1BP3 (ENSTSYG00000000316) #23
Strepsirrhini	ANCESTRAL SPECIES	13	ENSGT00470000042500	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Lemuriformes	ANCESTRAL SPECIES	23	ENSGT00470000042500	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Lemuriformes_a	ANCESTRAL SPECIES	10	ENSGT00470000042500	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Coquerels sifaka	MODERN SPECIES	559	CYRIA (ENSPCOG00000021268)	RAD51AP2 (ENSPCOG00000019163)	VSNL1 (ENSPCOG00000003780) #7	SMC6 (ENSPCOG00000028541) #8	GEN1 (ENSPCOG00000022405) #9	KCNS3 (ENSPCOG00000009392) #11	RDH14 (ENSPCOG00000023642) #12	NT5C1B (ENSPCOG00000000264) #13	OSR1 (ENSPCOG00000024991) #14	ENSPCOG00000015877	TTC32 (ENSPCOG00000028173) #15	MATN3 (ENSPCOG00000020678) #17	LAPTM4A (ENSPCOG00000019008) #18	SDC1 (ENSPCOG00000024117) #20	PUM2 (ENSPCOG00000019636) #21	RHOB (ENSPCOG00000004927) #22	HS1BP3 (ENSPCOG00000016428) #23	GDF7 (ENSPCOG00000020938) #24	LDAH (ENSPCOG00000014577) #25	APOB (ENSPCOG00000021611) #26	TDRD15 (ENSPCOG00000017764)
Mouse lemur	MODERN SPECIES	30	CYRIA (ENSMICG00000013924)	RAD51AP2 (ENSMICG00000038023)	VSNL1 (ENSMICG00000036354) #7	SMC6 (ENSMICG00000010802) #8	GEN1 (ENSMICG00000026479) #9	ENSMICG00000029479 #11	RDH14 (ENSMICG00000033814) #12	NT5C1B (ENSMICG00000010847) #13	OSR1 (ENSMICG00000004493) #14	ENSMICG00000041804 #15	WDR35 (ENSMICG00000037969) #16	MATN3 (ENSMICG00000032185) #17	LAPTM4A (ENSMICG00000031395) #18	SDC1 (ENSMICG00000041634) #20	PUM2 (ENSMICG00000011647) #21	RHOB (ENSMICG00000029771) #22	HS1BP3 (ENSMICG00000027064) #23	GDF7 (ENSMICG00000044629) #24	LDAH (ENSMICG00000011319) #25	APOB (ENSMICG00000011331) #26	TDRD15 (ENSMICG00000026358)	KLHL29 (ENSMICG00000032037) #27	ATAD2B (ENSMICG00000003489) #28	ENSMICG00000030239	ENSMICG00000043253	ENSMICG00000001508 #31	MFSD2B (ENSMICG00000027625) #32	WDCP (ENSMICG00000001526) #33	FKBP1B (ENSMICG00000028839) #34	SF3B6 (ENSMICG00000032874) #35	TP53I3 (ENSMICG00000001537) #36
Bushbaby	MODERN SPECIES	137	VSNL1 (ENSOGAG00000030574) #7	SMC6 (ENSOGAG00000004809) #8	GEN1 (ENSOGAG00000004816) #9	MSGN1 (ENSOGAG00000012569) #10	KCNS3 (ENSOGAG00000007336) #11	RDH14 (ENSOGAG00000027061) #12	NT5C1B (ENSOGAG00000001728) #13	OSR1 (ENSOGAG00000003047) #14	TTC32 (ENSOGAG00000002990) #15	WDR35 (ENSOGAG00000002991) #16	MATN3 (ENSOGAG00000002995) #17	ENSOGAG00000029374	LAPTM4A (ENSOGAG00000003002) #18	SDC1 (ENSOGAG00000010183) #20	PUM2 (ENSOGAG00000002187) #21	RHOB (ENSOGAG00000034489) #22	HS1BP3 (ENSOGAG00000000192) #23	GDF7 (ENSOGAG00000025229) #24	LDAH (ENSOGAG00000000194) #25	APOB (ENSOGAG00000015084) #26	TDRD15 (ENSOGAG00000026095)	KLHL29 (ENSOGAG00000004572) #27	ATAD2B (ENSOGAG00000004574) #28	UBXN2A (ENSOGAG00000000025) #31	MFSD2B (ENSOGAG00000002595) #32	WDCP (ENSOGAG00000002596) #33	FKBP1B (ENSOGAG00000029092) #34	SF3B6 (ENSOGAG00000004468) #35	TP53I3 (ENSOGAG00000004470) #36	ENSOGAG00000030458 #36	PFN4 (ENSOGAG00000004473) #37
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Tree shrew	MODERN SPECIES	2153																RHOB (ENSTBEG00000005585) #22	HS1BP3 (ENSTBEG00000005755) #23	ENSTBEG00000006617	ENSTBEG00000007029 #24	ENSTBEG00000007518 #25
Glires	ANCESTRAL SPECIES	13	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Lagomorpha	ANCESTRAL SPECIES	75	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.h.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Rabbit	MODERN SPECIES	11	GEN1 (ENSOCUG00000027255) #9	MSGN1 (ENSOCUG00000000309) #10	KCNS3 (ENSOCUG00000007365) #11	RDH14 (ENSOCUG00000025332) #12	NT5C1B (ENSOCUG00000026238) #13	OSR1 (ENSOCUG00000006091) #14	ENSOCUG00000034308	TTC32 (ENSOCUG00000003731) #15	WDR35 (ENSOCUG00000013185) #16	MATN3 (ENSOCUG00000021257) #17	LAPTM4A (ENSOCUG00000026699) #18	SDC1 (ENSOCUG00000025956) #20	ENSOCUG00000032467	PUM2 (ENSOCUG00000017908) #21	ENSOCUG00000025149	RHOB (ENSOCUG00000032265) #22	HS1BP3 (ENSOCUG00000015781) #23	GDF7 (ENSOCUG00000026956) #24	LDAH (ENSOCUG00000015795) #25	APOB (ENSOCUG00000005329) #26	TDRD15 (ENSOCUG00000005346)	KLHL29 (ENSOCUG00000017372) #27	ATAD2B (ENSOCUG00000005723) #28	UBXN2A (ENSOCUG00000008783) #31	ENSOCUG00000008793 #32	WDCP (ENSOCUG00000012562) #33	FKBP1B (ENSOCUG00000037720) #34	SF3B6 (ENSOCUG00000022008) #35	TP53I3 (ENSOCUG00000011212) #36	ENSOCUG00000015250 #37	FAM228B (ENSOCUG00000023977)
Rodentia	ANCESTRAL SPECIES	15	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Kangaroo rat	MODERN SPECIES	339	Vsnl1 (ENSDORG00000024043) #7	Smc6 (ENSDORG00000010753) #8	Gen1 (ENSDORG00000010754) #9	Msgn1 (ENSDORG00000003509) #10	Kcns3 (ENSDORG00000024097) #11	Rdh14 (ENSDORG00000019712) #12	Nt5c1b (ENSDORG00000012516) #13	Osr1 (ENSDORG00000000798) #14	Ttc32 (ENSDORG00000029568) #15	Wdr35 (ENSDORG00000014086) #16	Matn3 (ENSDORG00000014087) #17	Laptm4a (ENSDORG00000014089) #18	Sdc1 (ENSDORG00000014605) #20	Pum2 (ENSDORG00000011453) #21	ENSDORG00000027569	Rhob (ENSDORG00000016173) #22	Hs1bp3 (ENSDORG00000005361) #23	Gdf7 (ENSDORG00000010280) #24	Ldah (ENSDORG00000010281) #25	Apob (ENSDORG00000028395) #26	Klhl29 (ENSDORG00000012917) #27	ENSDORG00000027743 #28	Ubxn2a (ENSDORG00000025740) #31	Mfsd2b (ENSDORG00000015943) #32	Wdcp (ENSDORG00000009768) #33	Fkbp1b (ENSDORG00000025103) #34	ENSDORG00000009772 #35	ENSDORG00000009773 #36	Pfn4 (ENSDORG00000013388) #37	Fam228b (ENSDORG00000028363)	Itsn2 (ENSDORG00000004645)
Myomorpha	ANCESTRAL SPECIES	24	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Lesser Egyptian jerboa	MODERN SPECIES	106	Vsnl1 (ENSJJAG00000011824) #7	Smc6 (ENSJJAG00000010160) #8	Msgn1 (ENSJJAG00000006273) #10	Kcns3 (ENSJJAG00000001486) #11	Rdh14 (ENSJJAG00000023561) #12	Nt5c1b (ENSJJAG00000021950) #13	Osr1 (ENSJJAG00000022508) #14	ENSJJAG00000014132	Ttc32 (ENSJJAG00000022107) #15	Wdr35 (ENSJJAG00000016508) #16	Matn3 (ENSJJAG00000000252) #17	Laptm4a (ENSJJAG00000000101) #18	Sdc1 (ENSJJAG00000021653) #20	Pum2 (ENSJJAG00000020969) #21	ENSJJAG00000017909	Rhob (ENSJJAG00000013877) #22	ENSJJAG00000017439 #23	Gdf7 (ENSJJAG00000016441) #24	Ldah (ENSJJAG00000015888) #25	ENSJJAG00000007009 #26	ENSJJAG00000004727 #26	ENSJJAG00000003145	Klhl29 (ENSJJAG00000023008) #27	ENSJJAG00000014110	ENSJJAG00000022603	ENSJJAG00000018968	ENSJJAG00000017291 #28	Ubxn2a (ENSJJAG00000016225) #31	Mfsd2b (ENSJJAG00000023300) #32	Wdcp (ENSJJAG00000022685) #33	ENSJJAG00000022421 #34
Muroidea	ANCESTRAL SPECIES	21	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Muroidea_A	ANCESTRAL SPECIES	24	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Cricetidae	ANCESTRAL SPECIES	24	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00590000083139 #26	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b	ENSGT00940000155936.b
Chinese hamster chok1gshd	MODERN SPECIES	229	Smc6 (ENSCGRG00001024287) #8	ENSCGRG00001019699 #9	Msgn1 (ENSCGRG00001003369) #10	Kcns3 (ENSCGRG00001004289) #11	ENSCGRG00001006912	Rdh14 (ENSCGRG00001024177) #12	Nt5c1b (ENSCGRG00001016775) #13	Osr1 (ENSCGRG00001009653) #14	Ttc32 (ENSCGRG00001007763) #15	Wdr35 (ENSCGRG00001004220) #16	Matn3 (ENSCGRG00001025049) #17	Laptm4a (ENSCGRG00001021474) #18	SDC1 (ENSCGRG00001018173) #20	Pum2 (ENSCGRG00001025023) #21	Slc7a15 (ENSCGRG00001018113)	Rhob (ENSCGRG00001001843) #22	Hs1bp3 (ENSCGRG00001015945) #23	ENSCGRG00001012418 #25	Gdf7 (ENSCGRG00001002115) #24	Apob (ENSCGRG00001009990) #26	ENSCGRG00001024983	ENSCGRG00001024957	Klhl29 (ENSCGRG00001018377) #27	ENSCGRG00001012412	Atad2b (ENSCGRG00001016996) #28	Ubxn2a (ENSCGRG00001007449) #31	Mfsd2b (ENSCGRG00001024664) #32	Wdcp (ENSCGRG00001019012) #33	Fkbp1b (ENSCGRG00001018564) #34	Sf3b6 (ENSCGRG00001014595) #35	ENSCGRG00001011738 #36
Golden Hamster	MODERN SPECIES	705	Rad51ap2 (ENSMAUG00000015167)	Vsnl1 (ENSMAUG00000014300) #7	Smc6 (ENSMAUG00000016007) #8	Msgn1 (ENSMAUG00000016000) #10	Kcns3 (ENSMAUG00000017875) #11	Rdh14 (ENSMAUG00000016192) #12	Nt5c1b (ENSMAUG00000018395) #13	Osr1 (ENSMAUG00000008188) #14	Ttc32 (ENSMAUG00000018447) #15	Wdr35 (ENSMAUG00000017485) #16	Matn3 (ENSMAUG00000000731) #17	Laptm4a (ENSMAUG00000002092) #18	Sdc1 (ENSMAUG00000007825) #20	Pum2 (ENSMAUG00000000311) #21	Slc7a15 (ENSMAUG00000008328)	Rhob (ENSMAUG00000016245) #22	Hs1bp3 (ENSMAUG00000010929) #23	Gdf7 (ENSMAUG00000011905) #24	Apob (ENSMAUG00000010835) #26	Klhl29 (ENSMAUG00000015607) #27	ENSMAUG00000016676 #28	Ubxn2a (ENSMAUG00000013894) #31	Wdcp (ENSMAUG00000013564) #33	Fkbp1b (ENSMAUG00000016519) #34	ENSMAUG00000000586 #35	ENSMAUG00000004078 #36	Fam228b (ENSMAUG00000017259)	Fam228a (ENSMAUG00000019010)	Itsn2 (ENSMAUG00000015636)	Ncoa1 (ENSMAUG00000016768)	Ptrhd1 (ENSMAUG00000019251)
Cricetidae_B	ANCESTRAL SPECIES	43	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Northern American deer mouse	MODERN SPECIES	14	ENSPEMG00000007987	Kcns3 (ENSPEMG00000011462) #11	ENSPEMG00000025389	ENSPEMG00000000184	Rdh14 (ENSPEMG00000018416) #12	Nt5c1b (ENSPEMG00000013187) #13	Osr1 (ENSPEMG00000008344) #14	Ttc32 (ENSPEMG00000027871) #15	Wdr35 (ENSPEMG00000004790) #16	Matn3 (ENSPEMG00000017106) #17	Laptm4a (ENSPEMG00000015789) #18	Sdc1 (ENSPEMG00000010998) #20	ENSPEMG00000024635	Pum2 (ENSPEMG00000008357) #21	Slc7a15 (ENSPEMG00000009942)	Rhob (ENSPEMG00000013485) #22	Hs1bp3 (ENSPEMG00000001400) #23	ENSPEMG00000019039 #25	Apob (ENSPEMG00000018913) #26	ENSPEMG00000029395	Klhl29 (ENSPEMG00000012938) #27	ENSPEMG00000025296	Atad2b (ENSPEMG00000010515) #28	ENSPEMG00000017582 #31	Mfsd2b (ENSPEMG00000014144) #32	Wdcp (ENSPEMG00000011326) #33	Fkbp1b (ENSPEMG00000028047) #34	Sf3b6 (ENSPEMG00000010308) #35	ENSPEMG00000009026 #36	Pfn4 (ENSPEMG00000029613) #37	Fam228b (ENSPEMG00000007380)
Prairie vole	MODERN SPECIES	353	Tacstd2 (ENSMOCG00000008197)	Kcns3 (ENSMOCG00000007505) #11	Rdh14 (ENSMOCG00000005865) #12	Nt5c1b (ENSMOCG00000020580) #13	ENSMOCG00000013225	Osr1 (ENSMOCG00000012793) #14	ENSMOCG00000007598	Ttc32 (ENSMOCG00000021911) #15	Wdr35 (ENSMOCG00000001393) #16	Matn3 (ENSMOCG00000013872) #17	Laptm4a (ENSMOCG00000013181) #18	ENSMOCG00000012688	Sdc1 (ENSMOCG00000019532) #20	Pum2 (ENSMOCG00000013663) #21	Slc7a15 (ENSMOCG00000003687)	Rhob (ENSMOCG00000007966) #22	Hs1bp3 (ENSMOCG00000022226) #23	ENSMOCG00000021323	Gdf7 (ENSMOCG00000010905) #24	Apob (ENSMOCG00000021753) #26	ENSMOCG00000002216	ENSMOCG00000013271	ENSMOCG00000012724	Klhl29 (ENSMOCG00000007430) #27	Atad2b (ENSMOCG00000000408) #28	Ubxn2a (ENSMOCG00000020669) #31	Mfsd2b (ENSMOCG00000012318) #32	Wdcp (ENSMOCG00000013612) #33	Fkbp1b (ENSMOCG00000012542) #34	ENSMOCG00000013438	Abcg2 (ENSMOCG00000012726)
Murinae	ANCESTRAL SPECIES	8	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b
Mus	ANCESTRAL SPECIES	10	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b
spretus	MODERN SPECIES	3	Vsnl1 (MGP_SPRETEiJ_G0018460) #7	Smc6 (MGP_SPRETEiJ_G0018459) #8	Gen1 (MGP_SPRETEiJ_G0018458) #9	Msgn1 (MGP_SPRETEiJ_G0018457) #10	Kcns3 (MGP_SPRETEiJ_G0018456) #11	Rdh14 (MGP_SPRETEiJ_G0018455) #12	Nt5c1b (MGP_SPRETEiJ_G0018454) #13	Osr1 (MGP_SPRETEiJ_G0018453) #14	Ttc32 (MGP_SPRETEiJ_G0018452) #15	Wdr35 (MGP_SPRETEiJ_G0018451) #16	Matn3 (MGP_SPRETEiJ_G0018450) #17	MGP_SPRETEiJ_G0018449 #18	Sdc1 (MGP_SPRETEiJ_G0018448) #20	Pum2 (MGP_SPRETEiJ_G0018447) #21	Slc7a15 (MGP_SPRETEiJ_G0018446)	Rhob (MGP_SPRETEiJ_G0018445) #22	Hs1bp3 (MGP_SPRETEiJ_G0018444) #23	Gdf7 (MGP_SPRETEiJ_G0018443) #24	Ldah (MGP_SPRETEiJ_G0018442) #25	Apob (MGP_SPRETEiJ_G0018441) #26	Klhl29 (MGP_SPRETEiJ_G0018440) #27	Atad2b (MGP_SPRETEiJ_G0018439) #28	Ubxn2a (MGP_SPRETEiJ_G0018438) #31	Mfsd2b (MGP_SPRETEiJ_G0018437) #32	Wdcp (MGP_SPRETEiJ_G0018436) #33	Fkbp1b (MGP_SPRETEiJ_G0018435) #34	Sf3b6 (MGP_SPRETEiJ_G0018434) #35	Pfn4 (MGP_SPRETEiJ_G0018433) #37	Fam228b (MGP_SPRETEiJ_G0018432)	Fam228a (MGP_SPRETEiJ_G0018431)	MGP_SPRETEiJ_G0018430
Steppe mouse	MODERN SPECIES	153															Slc7a15 (ENSMSIG00000013022)	Rhob (ENSMSIG00000013015) #22
Mouse	MODERN SPECIES	3	Vsnl1 (ENSMUSG00000054459) #7	Smc6 (ENSMUSG00000020608) #8	Gen1 (ENSMUSG00000051235) #9	Msgn1 (ENSMUSG00000047002) #10	Kcns3 (ENSMUSG00000043673) #11	Rdh14 (ENSMUSG00000020621) #12	Nt5c1b (ENSMUSG00000020622) #13	Osr1 (ENSMUSG00000048387) #14	Ttc32 (ENSMUSG00000066637) #15	Wdr35 (ENSMUSG00000066643) #16	Matn3 (ENSMUSG00000020583) #17	Laptm4a (ENSMUSG00000020585) #18	Sdc1 (ENSMUSG00000020592) #20	Pum2 (ENSMUSG00000020594) #21	Slc7a15 (ENSMUSG00000020600)	Rhob (ENSMUSG00000054364) #22	Hs1bp3 (ENSMUSG00000020605) #23	Gdf7 (ENSMUSG00000037660) #24	Ldah (ENSMUSG00000037669) #25	Apob (ENSMUSG00000020609) #26	Klhl29 (ENSMUSG00000020627) #27	Atad2b (ENSMUSG00000052812) #28	Ubxn2a (ENSMUSG00000020634) #31	Mfsd2b (ENSMUSG00000037336) #32	Wdcp (ENSMUSG00000051721) #33	Fkbp1b (ENSMUSG00000020635) #34	Sf3b6 (ENSMUSG00000037361) #35	Pfn4 (ENSMUSG00000020639) #37	Fam228b (ENSMUSG00000050545)	Fam228a (ENSMUSG00000079177)	Itsn2 (ENSMUSG00000020640)
Ryukyu mouse	MODERN SPECIES	3	Gen1 (MGP_CAROLIEiJ_G0017616) #9	Msgn1 (MGP_CAROLIEiJ_G0017615) #10	MGP_CAROLIEiJ_G0017614	Vmn1r200 (MGP_CAROLIEiJ_G0017613)	Kcns3 (MGP_CAROLIEiJ_G0017612) #11	Rdh14 (MGP_CAROLIEiJ_G0017611) #12	Nt5c1b (MGP_CAROLIEiJ_G0017610) #13	Osr1 (MGP_CAROLIEiJ_G0017609) #14	Ttc32 (MGP_CAROLIEiJ_G0017608) #15	Wdr35 (MGP_CAROLIEiJ_G0017607) #16	Matn3 (MGP_CAROLIEiJ_G0017606) #17	MGP_CAROLIEiJ_G0017605 #18	Sdc1 (MGP_CAROLIEiJ_G0017604) #20	Pum2 (MGP_CAROLIEiJ_G0017603) #21	Slc7a15 (MGP_CAROLIEiJ_G0017602)	Rhob (MGP_CAROLIEiJ_G0017601) #22	Hs1bp3 (MGP_CAROLIEiJ_G0017600) #23	Gdf7 (MGP_CAROLIEiJ_G0017599) #24	Ldah (MGP_CAROLIEiJ_G0017598) #25	Apob (MGP_CAROLIEiJ_G0017597) #26	Klhl29 (MGP_CAROLIEiJ_G0017596) #27	MGP_CAROLIEiJ_G0017595 #28	MGP_CAROLIEiJ_G0017594 #31	Mfsd2b (MGP_CAROLIEiJ_G0017593) #32	Wdcp (MGP_CAROLIEiJ_G0017592) #33	Fkbp1b (MGP_CAROLIEiJ_G0017591) #34	Sf3b6 (MGP_CAROLIEiJ_G0017590) #35	Pfn4 (MGP_CAROLIEiJ_G0017589) #37	Fam228b (MGP_CAROLIEiJ_G0017588)	Fam228a (MGP_CAROLIEiJ_G0017587)	MGP_CAROLIEiJ_G0017586
Shrew mouse	MODERN SPECIES	20	Vsnl1 (MGP_PahariEiJ_G0029374) #7	Smc6 (MGP_PahariEiJ_G0029373) #8	Gen1 (MGP_PahariEiJ_G0029372) #9	Msgn1 (MGP_PahariEiJ_G0029371) #10	Kcns3 (MGP_PahariEiJ_G0029370) #11	Rdh14 (MGP_PahariEiJ_G0029369) #12	Nt5c1b (MGP_PahariEiJ_G0029368) #13	Osr1 (MGP_PahariEiJ_G0029367) #14	Ttc32 (MGP_PahariEiJ_G0029366) #15	Wdr35 (MGP_PahariEiJ_G0029365) #16	Matn3 (MGP_PahariEiJ_G0029364) #17	MGP_PahariEiJ_G0029363 #18	Sdc1 (MGP_PahariEiJ_G0029362) #20	Pum2 (MGP_PahariEiJ_G0029361) #21	Slc7a15 (MGP_PahariEiJ_G0029360)	Rhob (MGP_PahariEiJ_G0029359) #22	Hs1bp3 (MGP_PahariEiJ_G0029358) #23	Gdf7 (MGP_PahariEiJ_G0029357) #24	Ldah (MGP_PahariEiJ_G0029356) #25	Apob (MGP_PahariEiJ_G0029355) #26	Klhl29 (MGP_PahariEiJ_G0029354) #27	Atad2b (MGP_PahariEiJ_G0029353) #28	Ubxn2a (MGP_PahariEiJ_G0029352) #31	Mfsd2b (MGP_PahariEiJ_G0029351) #32	Wdcp (MGP_PahariEiJ_G0029350) #33	Fkbp1b (MGP_PahariEiJ_G0029349) #34	Sf3b6 (MGP_PahariEiJ_G0029348) #35	Pfn4 (MGP_PahariEiJ_G0029347) #37	Fam228b (MGP_PahariEiJ_G0029346)	Fam228a (MGP_PahariEiJ_G0029345)	Itsn2 (MGP_PahariEiJ_G0029344)
Upper Galilee mountains blind mole rat	MODERN SPECIES	935														ENSNGAG00000001718	Slc7a15 (ENSNGAG00000013217)	Rhob (ENSNGAG00000012881) #22	ENSNGAG00000002248 #23	Gdf7 (ENSNGAG00000013061) #24	Ldah (ENSNGAG00000005358) #25
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.h.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b	ENSGT00940000155936.b
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000009816	ENSHGLG00000006546	ENSHGLG00000046615	BUB1 (ENSHGLG00000017666)	BCL2L11 (ENSHGLG00000008457)	ENSHGLG00000035758	ANAPC1 (ENSHGLG00000008271)	MERTK (ENSHGLG00000005187)	ENSHGLG00000050486	ENSHGLG00000013328	FBLN7 (ENSHGLG00000010654)	ZC3H8 (ENSHGLG00000008367)	ENSHGLG00000011882	ENSHGLG00000033390	ENSHGLG00000006049	ENSHGLG00000037423 #22	ENSHGLG00000039633 #23	ENSHGLG00000047860 #23	GDF7 (ENSHGLG00000050774) #24	LDAH (ENSHGLG00000043039) #25	ENSHGLG00000015785	APOB (ENSHGLG00000013850) #26	ENSHGLG00000050959	KLHL29 (ENSHGLG00000011946) #27	ATAD2B (ENSHGLG00000015927) #28	ENSHGLG00000049747 #31	MFSD2B (ENSHGLG00000013434) #32	WDCP (ENSHGLG00000016283) #33	ENSHGLG00000014590 #34	SF3B6 (ENSHGLG00000014895) #35	PFN4 (ENSHGLG00000042109) #37
Hystricomorpha_a	ANCESTRAL SPECIES	31	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b	ENSGT00940000155936.b
Hystricomorpha_b	ANCESTRAL SPECIES	26	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b	ENSGT00940000155936.b
Degu	MODERN SPECIES	60	GEN1 (ENSODEG00000010156) #9	MSGN1 (ENSODEG00000009615) #10	ENSODEG00000019755	KCNS3 (ENSODEG00000009066) #11	RDH14 (ENSODEG00000008458) #12	NT5C1B (ENSODEG00000008929) #13	OSR1 (ENSODEG00000008728) #14	TTC32 (ENSODEG00000009280) #15	WDR35 (ENSODEG00000012693) #16	MATN3 (ENSODEG00000008451) #17	LAPTM4A (ENSODEG00000008579) #18	SDC1 (ENSODEG00000010758) #20	ENSODEG00000008774	PUM2 (ENSODEG00000007823) #21	ENSODEG00000010362	RHOB (ENSODEG00000019841) #22	HS1BP3 (ENSODEG00000010003) #23	GDF7 (ENSODEG00000008847) #24	ENSODEG00000008523 #25	APOB (ENSODEG00000008337) #26	ENSODEG00000019494	ENSODEG00000007994	ENSODEG00000019450	ENSODEG00000007428	KLHL29 (ENSODEG00000009928) #27	ENSODEG00000008786	ENSODEG00000009834 #28	ENSODEG00000008643	ENSODEG00000007644	ENSODEG00000007455	ENSODEG00000008882 #31
Long-tailed chinchilla	MODERN SPECIES	176	VSNL1 (ENSCLAG00000011222) #7	SMC6 (ENSCLAG00000012919) #8	GEN1 (ENSCLAG00000008865) #9	MSGN1 (ENSCLAG00000015119) #10	KCNS3 (ENSCLAG00000013937) #11	RDH14 (ENSCLAG00000009341) #12	NT5C1B (ENSCLAG00000008659) #13	OSR1 (ENSCLAG00000009423) #14	TTC32 (ENSCLAG00000009839) #15	WDR35 (ENSCLAG00000007929) #16	MATN3 (ENSCLAG00000006019) #17	LAPTM4A (ENSCLAG00000006983) #18	SDC1 (ENSCLAG00000007345) #20	PUM2 (ENSCLAG00000006048) #21	ENSCLAG00000005814	RHOB (ENSCLAG00000017801) #22	HS1BP3 (ENSCLAG00000008832) #23	LDAH (ENSCLAG00000011308) #25	APOB (ENSCLAG00000008056) #26	KLHL29 (ENSCLAG00000005598) #27	ATAD2B (ENSCLAG00000005215) #28	UBXN2A (ENSCLAG00000014610) #31	MFSD2B (ENSCLAG00000014189) #32	WDCP (ENSCLAG00000008275) #33	FKBP1B (ENSCLAG00000011181) #34	SF3B6 (ENSCLAG00000014512) #35	PFN4 (ENSCLAG00000004618) #37	FAM228B (ENSCLAG00000004984)	ENSCLAG00000005849	ITSN2 (ENSCLAG00000013590)	NCOA1 (ENSCLAG00000012434)
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Eurasian red squirrel	MODERN SPECIES	5	SMC6 (ENSSVLG00005025164) #8	GEN1 (ENSSVLG00005025123) #9	MSGN1 (ENSSVLG00005025107) #10	KCNS3 (ENSSVLG00005025089) #11	ENSSVLG00005025079	RDH14 (ENSSVLG00005025062) #12	NT5C1B (ENSSVLG00005025002) #13	OSR1 (ENSSVLG00005024914) #14	TTC32 (ENSSVLG00005024889) #15	WDR35 (ENSSVLG00005024826) #16	MATN3 (ENSSVLG00005024711) #17	LAPTM4A (ENSSVLG00005024670) #18	SDC1 (ENSSVLG00005024647) #20	ENSSVLG00005024506 #21	ENSSVLG00005024370	RHOB (ENSSVLG00005024328) #22	HS1BP3 (ENSSVLG00005024304) #23	GDF7 (ENSSVLG00005024288) #24	LDAH (ENSSVLG00005024216) #25	APOB (ENSSVLG00005023994) #26	TDRD15 (ENSSVLG00005023954)	KLHL29 (ENSSVLG00005023916) #27	ATAD2B (ENSSVLG00005023756) #28	ENSSVLG00005023695 #31	MFSD2B (ENSSVLG00005023554) #32	WDCP (ENSSVLG00005023512) #33	FKBP1B (ENSSVLG00005023436) #34	ENSSVLG00005023387 #35	TP53I3 (ENSSVLG00005023330) #36	PFN4 (ENSSVLG00005023293) #37	FAM228B (ENSSVLG00005023199)
Marmotini	ANCESTRAL SPECIES	14	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a.u.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Alpin marmot	MODERN SPECIES	6	SMC6 (ENSMMMG00000022309) #8	GEN1 (ENSMMMG00000022304) #9	MSGN1 (ENSMMMG00000022303) #10	KCNS3 (ENSMMMG00000022292) #11	RDH14 (ENSMMMG00000022280) #12	ENSMMMG00000022251 #13	OSR1 (ENSMMMG00000022239) #14	TTC32 (ENSMMMG00000022212) #15	WDR35 (ENSMMMG00000022195) #16	MATN3 (ENSMMMG00000022186) #17	LAPTM4A (ENSMMMG00000022160) #18	SDC1 (ENSMMMG00000022131) #20	ENSMMMG00000022129	PUM2 (ENSMMMG00000022116) #21	ENSMMMG00000022089	RHOB (ENSMMMG00000022086) #22	HS1BP3 (ENSMMMG00000022083) #23	LDAH (ENSMMMG00000022060) #25	ENSMMMG00000022059 #26	ENSMMMG00000022049 #26	TDRD15 (ENSMMMG00000022048)	KLHL29 (ENSMMMG00000022005) #27	ATAD2B (ENSMMMG00000021898) #28	ENSMMMG00000021893	MFSD2B (ENSMMMG00000021873) #32	WDCP (ENSMMMG00000021855) #33	FKBP1B (ENSMMMG00000021830) #34	TP53I3 (ENSMMMG00000021823) #36	PFN4 (ENSMMMG00000021805) #37	FAM228B (ENSMMMG00000021792)	ENSMMMG00000021782
Marmotini_b	ANCESTRAL SPECIES	17	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a.u.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a.g #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	93	SMC6 (ENSSTOG00000013946) #8	GEN1 (ENSSTOG00000013963) #9	MSGN1 (ENSSTOG00000013981) #10	KCNS3 (ENSSTOG00000012420) #11	RDH14 (ENSSTOG00000021114) #12	NT5C1B (ENSSTOG00000014834) #13	OSR1 (ENSSTOG00000015454) #14	TTC32 (ENSSTOG00000007140) #15	WDR35 (ENSSTOG00000007151) #16	MATN3 (ENSSTOG00000019530) #17	ENSSTOG00000007214 #18	SDC1 (ENSSTOG00000028519) #20	ENSSTOG00000033291	PUM2 (ENSSTOG00000006262) #21	ENSSTOG00000023326	ENSSTOG00000014644 #22	HS1BP3 (ENSSTOG00000004973) #23	GDF7 (ENSSTOG00000027110) #24	LDAH (ENSSTOG00000026882) #25	APOB (ENSSTOG00000027598) #26	TDRD15 (ENSSTOG00000027567)	ENSSTOG00000033132 #18	KLHL29 (ENSSTOG00000008403) #27	ATAD2B (ENSSTOG00000021066) #28	UBXN2A (ENSSTOG00000030412) #31	MFSD2B (ENSSTOG00000003123) #32	WDCP (ENSSTOG00000032257) #33	FKBP1B (ENSSTOG00000034202) #34	SF3B6 (ENSSTOG00000027077) #35	TP53I3 (ENSSTOG00000003142) #36	PFN4 (ENSSTOG00000003151) #37
Squirrel	MODERN SPECIES	71	CLN6 (ENSSTOG00000015540)	FEM1B (ENSSTOG00000015544)	ITGA11 (ENSSTOG00000015545)	CORO2B (ENSSTOG00000015918)	ENSSTOG00000015929	GLCE (ENSSTOG00000019509)	PAQR5 (ENSSTOG00000000507)	KIF23 (ENSSTOG00000022809)	RPLP1 (ENSSTOG00000027893)	TLE3 (ENSSTOG00000000531)	UACA (ENSSTOG00000024719)	LARP6 (ENSSTOG00000024279)	LRRC49 (ENSSTOG00000000941)	THSD4 (ENSSTOG00000027069)	NR2E3 (ENSSTOG00000012080)	ENSSTOG00000020463 #22	MYO9A (ENSSTOG00000013284)	ENSSTOG00000032735	SENP8 (ENSSTOG00000012663)	GRAMD2A (ENSSTOG00000009505)	PKM (ENSSTOG00000008167)	PARP6 (ENSSTOG00000008186)	CELF6 (ENSSTOG00000019540)	HEXA (ENSSTOG00000033336)	ENSSTOG00000013434	ARIH1 (ENSSTOG00000026001)	BBS4 (ENSSTOG00000012246)	ADPGK (ENSSTOG00000012259)	NEO1 (ENSSTOG00000012264)	HCN4 (ENSSTOG00000012286)	ENSSTOG00000034860
Arctic ground squirrel	MODERN SPECIES		SMC6 (ENSUPAG00010009564) #8	GEN1 (ENSUPAG00010009557) #9	MSGN1 (ENSUPAG00010009556) #10	RDH14 (ENSUPAG00010009546) #12	ENSUPAG00010009474 #13	OSR1 (ENSUPAG00010009451) #14	TTC32 (ENSUPAG00010009436) #15	WDR35 (ENSUPAG00010009354) #16	MATN3 (ENSUPAG00010009339) #17	LAPTM4A (ENSUPAG00010009333) #18	SDC1 (ENSUPAG00010009310) #20	ENSUPAG00010009303	ENSUPAG00010009301	PUM2 (ENSUPAG00010009123) #21	ENSUPAG00010009092	RHOB (ENSUPAG00010009084) #22	HS1BP3 (ENSUPAG00010009063) #23	ENSUPAG00010009055 #24	ENSUPAG00010009042 #24	LDAH (ENSUPAG00010009007) #25	APOB (ENSUPAG00010008961) #26	TDRD15 (ENSUPAG00010008953)	ENSUPAG00010008883	KLHL29 (ENSUPAG00010008812) #27	ATAD2B (ENSUPAG00010008759) #28	UBXN2A (ENSUPAG00010008734) #31	MFSD2B (ENSUPAG00010008700) #32	WDCP (ENSUPAG00010008689) #33	FKBP1B (ENSUPAG00010008674) #34	SF3B6 (ENSUPAG00010008671) #35	ENSUPAG00010008668 #36
Laurasiatheria	ANCESTRAL SPECIES	13	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Laurasiatheria_a	ANCESTRAL SPECIES	17	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Artiodactyla	ANCESTRAL SPECIES	16	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Suina	ANCESTRAL SPECIES	13	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b
Pig	MODERN SPECIES	11	ENSSSCG00000040752	KCNS3 (ENSSSCG00000031905) #11	RDH14 (ENSSSCG00000008608) #12	NT5C1B (ENSSSCG00000008607) #13	ENSSSCG00000054495	OSR1 (ENSSSCG00000060496) #14	ENSSSCG00000058710	TTC32 (ENSSSCG00000053616) #15	WDR35 (ENSSSCG00000008604) #16	MATN3 (ENSSSCG00000008603) #17	LAPTM4A (ENSSSCG00000008602) #18	SDC1 (ENSSSCG00000008601) #20	PUM2 (ENSSSCG00000008600) #21	ENSSSCG00000054581	ENSSSCG00000008599	RHOB (ENSSSCG00000043781) #22	HS1BP3 (ENSSSCG00000030115) #23	GDF7 (ENSSSCG00000028931) #24	LDAH (ENSSSCG00000025357) #25	APOB (ENSSSCG00000008595) #26	ENSSSCG00000048838	ENSSSCG00000039066	ENSSSCG00000044002	KLHL29 (ENSSSCG00000008593) #27	ENSSSCG00000055154	ATAD2B (ENSSSCG00000008591) #28	ENSSSCG00000041783	UBXN2A (ENSSSCG00000033753) #31	MFSD2B (ENSSSCG00000008590) #32	WDCP (ENSSSCG00000008589) #33	FKBP1B (ENSSSCG00000045531) #34
Chacoan peccary	MODERN SPECIES	776	VSNL1 (ENSCWAG00000016143) #7	SMC6 (ENSCWAG00000016171) #8	GEN1 (ENSCWAG00000016234) #9	MSGN1 (ENSCWAG00000016325) #10	KCNS3 (ENSCWAG00000016339) #11	RDH14 (ENSCWAG00000016353) #12	NT5C1B (ENSCWAG00000016386) #13	OSR1 (ENSCWAG00000016456) #14	TTC32 (ENSCWAG00000016481) #15	WDR35 (ENSCWAG00000016523) #16	MATN3 (ENSCWAG00000016742) #17	LAPTM4A (ENSCWAG00000016902) #18	SDC1 (ENSCWAG00000016920) #20	PUM2 (ENSCWAG00000003696) #21	ENSCWAG00000003897	RHOB (ENSCWAG00000004001) #22	HS1BP3 (ENSCWAG00000004014) #23	GDF7 (ENSCWAG00000004046) #24	LDAH (ENSCWAG00000004087) #25	APOB (ENSCWAG00000004185) #26	KLHL29 (ENSCWAG00000004442) #27	ATAD2B (ENSCWAG00000004481) #28	UBXN2A (ENSCWAG00000004513) #31	MFSD2B (ENSCWAG00000004534) #32	WDCP (ENSCWAG00000004635) #33	FKBP1B (ENSCWAG00000004665) #34	SF3B6 (ENSCWAG00000004714) #35	TP53I3 (ENSCWAG00000004737) #36	PFN4 (ENSCWAG00000004758) #37	FAM228B (ENSCWAG00000004823)	ENSCWAG00000004843
Artiodactyla_a	ANCESTRAL SPECIES	15	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Camelidae	ANCESTRAL SPECIES	12	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT01090000263460	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Arabian camel	MODERN SPECIES	6	SMC6 (ENSCDRG00005004835) #8	GEN1 (ENSCDRG00005004909) #9	MSGN1 (ENSCDRG00005004972) #10	KCNS3 (ENSCDRG00005004986) #11	RDH14 (ENSCDRG00005004999) #12	NT5C1B (ENSCDRG00005005015) #13	OSR1 (ENSCDRG00005005052) #14	TTC32 (ENSCDRG00005005072) #15	ENSCDRG00005005097 #16	MATN3 (ENSCDRG00005005117) #17	LAPTM4A (ENSCDRG00005005142) #18	ENSCDRG00005005168	SDC1 (ENSCDRG00005005384) #20	ENSCDRG00005005424	PUM2 (ENSCDRG00005005454) #21	RHOB (ENSCDRG00005005629) #22	HS1BP3 (ENSCDRG00005005637) #23	LDAH (ENSCDRG00005005753) #25	ENSCDRG00005005813	APOB (ENSCDRG00005005937) #26	TDRD15 (ENSCDRG00005007436)	ENSCDRG00005007452	ENSCDRG00005007461	KLHL29 (ENSCDRG00005007511) #27	ATAD2B (ENSCDRG00005007580) #28	UBXN2A (ENSCDRG00005007692) #31	MFSD2B (ENSCDRG00005007767) #32	WDCP (ENSCDRG00005007980) #33	FKBP1B (ENSCDRG00005008005) #34	SF3B6 (ENSCDRG00005008085) #35	TP53I3 (ENSCDRG00005008122) #36
Alpaca	MODERN SPECIES	5188																RHOB (ENSVPAG00000009796) #22
Artiodactyla_b	ANCESTRAL SPECIES	14	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Pecora	ANCESTRAL SPECIES	5	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT01010000230154	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00950000183014.f.a.h.u.a.a.a	ENSGT00930000152728.b.b	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35
Yarkand deer	MODERN SPECIES	2	SMC6 (ENSCHYG00000007159) #8	GEN1 (ENSCHYG00000007066) #9	MSGN1 (ENSCHYG00000007045) #10	KCNS3 (ENSCHYG00000007031) #11	RDH14 (ENSCHYG00000007014) #12	NT5C1B (ENSCHYG00000006961) #13	ENSCHYG00000006946	OSR1 (ENSCHYG00000006938) #14	TTC32 (ENSCHYG00000006877) #15	WDR35 (ENSCHYG00000006261) #16	MATN3 (ENSCHYG00000006044) #17	LAPTM4A (ENSCHYG00000005989) #18	SDC1 (ENSCHYG00000005966) #20	PUM2 (ENSCHYG00000005651) #21	ENSCHYG00000005597	RHOB (ENSCHYG00000005587) #22	HS1BP3 (ENSCHYG00000005568) #23	GDF7 (ENSCHYG00000005551) #24	ENSCHYG00000005540	LDAH (ENSCHYG00000017844) #25	APOB (ENSCHYG00000017558) #26	TDRD15 (ENSCHYG00000017505)	ENSCHYG00000017476	KLHL29 (ENSCHYG00000017090) #27	ATAD2B (ENSCHYG00000016580) #28	ENSCHYG00000016517 #31	MFSD2B (ENSCHYG00000016413) #32	WDCP (ENSCHYG00000016368) #33	FKBP1B (ENSCHYG00000016279) #34	TP53I3 (ENSCHYG00000016071) #36	PFN4 (ENSCHYG00000015825) #37
Percora_a	ANCESTRAL SPECIES	13	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT01010000230154	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00950000183014.f.a.h.u.a.a.a	ENSGT00930000152728.b.b	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35
Siberian musk deer	MODERN SPECIES	239	GEN1 (ENSMMSG00000002401) #9	MSGN1 (ENSMMSG00000002419) #10	KCNS3 (ENSMMSG00000002436) #11	RDH14 (ENSMMSG00000002449) #12	NT5C1B (ENSMMSG00000002465) #13	OSR1 (ENSMMSG00000002491) #14	TTC32 (ENSMMSG00000002503) #15	WDR35 (ENSMMSG00000002532) #16	ENSMMSG00000002584	MATN3 (ENSMMSG00000002615) #17	LAPTM4A (ENSMMSG00000002657) #18	ENSMMSG00000002671	SDC1 (ENSMMSG00000002684) #20	PUM2 (ENSMMSG00000002715) #21	ENSMMSG00000002810	RHOB (ENSMMSG00000002823) #22	HS1BP3 (ENSMMSG00000002840) #23	GDF7 (ENSMMSG00000002860) #24	ENSMMSG00000002886 #25	ENSMMSG00000003002	APOB (ENSMMSG00000003055) #26	TDRD15 (ENSMMSG00000003160)	ENSMMSG00000003169
Bovidae	ANCESTRAL SPECIES	5	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT01010000230154	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00950000183014.f.a.h.u.a.a.a	ENSGT00930000152728.b.b	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35
Caprinae	ANCESTRAL SPECIES	9	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT01010000230154	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00950000183014.f.a.h.u.a.a.a	ENSGT00930000152728.b.b	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35
Rambouillet Sheep	MODERN SPECIES	19	FAM49A (ENSOARG00020016491)	RAD51AP2 (ENSOARG00020016789)	VSNL1 (ENSOARG00020016837) #7	SMC6 (ENSOARG00020016887) #8	MSGN1 (ENSOARG00020017429) #10	KCNS3 (ENSOARG00020017454) #11	RDH14 (ENSOARG00020017495) #12	NT5C1B (ENSOARG00020017529) #13	OSR1 (ENSOARG00020017609) #14	TTC32 (ENSOARG00020017652) #15	WDR35 (ENSOARG00020017694) #16	MATN3 (ENSOARG00020018018) #17	LAPTM4A (ENSOARG00020018198) #18	SDC1 (ENSOARG00020018247) #20	PUM2 (ENSOARG00020018298) #21	RHOB (ENSOARG00020018495) #22	HS1BP3 (ENSOARG00020018571) #23	GDF7 (ENSOARG00020018622) #24	LDAH (ENSOARG00020018657) #25	ENSOARG00020018924	ENSOARG00020018981 #26	TDRD15 (ENSOARG00020019143)	ENSOARG00020019194	ENSOARG00020019210	KLHL29 (ENSOARG00020019264) #27	ATAD2B (ENSOARG00020019344) #28	ENSOARG00020019629	UBXN2A (ENSOARG00020019662) #31	MFSD2B (ENSOARG00020019757) #32	FKBP1B (ENSOARG00020019964) #34	SF3B6 (ENSOARG00020020043) #35
Goat	MODERN SPECIES	2	SMC6 (ENSCHIG00000010144) #8	GEN1 (ENSCHIG00000013888) #9	MSGN1 (ENSCHIG00000010365) #10	KCNS3 (ENSCHIG00000012986) #11	ENSCHIG00000027201 #12	NT5C1B (ENSCHIG00000026605) #13	OSR1 (ENSCHIG00000020202) #14	TTC32 (ENSCHIG00000025091) #15	WDR35 (ENSCHIG00000006588) #16	MATN3 (ENSCHIG00000018061) #17	LAPTM4A (ENSCHIG00000022265) #18	SDC1 (ENSCHIG00000018782) #20	ENSCHIG00000025915	PUM2 (ENSCHIG00000022180) #21	ENSCHIG00000018368	RHOB (ENSCHIG00000012713) #22	HS1BP3 (ENSCHIG00000026302) #23	GDF7 (ENSCHIG00000011381) #24	ENSCHIG00000024630	LDAH (ENSCHIG00000013047) #25	APOB (ENSCHIG00000016651) #26	TDRD15 (ENSCHIG00000024751)	ENSCHIG00000013040	KLHL29 (ENSCHIG00000021081) #27	ATAD2B (ENSCHIG00000016699) #28	UBXN2A (ENSCHIG00000008772) #31	MFSD2B (ENSCHIG00000015093) #32	WDCP (ENSCHIG00000017430) #33	FKBP1B (ENSCHIG00000025133) #34	SF3B6 (ENSCHIG00000009902) #35	TP53I3 (ENSCHIG00000007693) #36
Bovinae	ANCESTRAL SPECIES	4	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181.e #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00950000183014.f.a.h.u.a.a.a.b	ENSGT00930000152728.b.b	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908.s.a #35	ENSGT00940000161217 #36
American bison	MODERN SPECIES	3068	VSNL1 (ENSBBBG00000005304) #7	SMC6 (ENSBBBG00000019549) #8	GEN1 (ENSBBBG00000005250) #9	MSGN1 (ENSBBBG00000005230) #10	KCNS3 (ENSBBBG00000019452) #11	ENSBBBG00000019450 #12	NT5C1B (ENSBBBG00000009192) #13	OSR1 (ENSBBBG00000019430) #14	TTC32 (ENSBBBG00000006785) #15	WDR35 (ENSBBBG00000007319) #16	MATN3 (ENSBBBG00000019335) #17	LAPTM4A (ENSBBBG00000007183) #18	SDC1 (ENSBBBG00000009171) #20	PUM2 (ENSBBBG00000019297) #21	ENSBBBG00000019228	RHOB (ENSBBBG00000019223) #22	HS1BP3 (ENSBBBG00000019208) #23	LDAH (ENSBBBG00000019145) #25	APOB (ENSBBBG00000019104) #26	TDRD15 (ENSBBBG00000004866)	ENSBBBG00000004865	ENSBBBG00000004864	KLHL29 (ENSBBBG00000019026) #27	ATAD2B (ENSBBBG00000018952) #28	UBXN2A (ENSBBBG00000018929) #31	MFSD2B (ENSBBBG00000004782) #32	WDCP (ENSBBBG00000018782) #33	FKBP1B (ENSBBBG00000004715) #34	ENSBBBG00000018761 #35	TP53I3 (ENSBBBG00000018749) #36	PFN4 (ENSBBBG00000018737) #37
Bos	ANCESTRAL SPECIES	5	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181.e #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00550000074784.a.b	ENSGT01030000234916.g.a	ENSGT00950000183014.f.a.h.u.a.a.a.b	ENSGT00930000152728.b.b	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34
Bos_b	ANCESTRAL SPECIES	16	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181.e #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.b.b	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00550000074784.a.b	ENSGT01030000234916.g.a.a	ENSGT00950000183014.f.a.h.u.a.a.a.b	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908.s.a #35
Hybrid Bos Indicus	MODERN SPECIES	2	SMC6 (ENSBIXG00005004235) #8	GEN1 (ENSBIXG00005024882) #9	MSGN1 (ENSBIXG00005024894) #10	KCNS3 (ENSBIXG00005024916) #11	RDH14 (ENSBIXG00005024953) #12	NT5C1B (ENSBIXG00005025000) #13	ENSBIXG00005025042 #14	TTC32 (ENSBIXG00005025110) #15	WDR35 (ENSBIXG00005025304) #16	MATN3 (ENSBIXG00005006070) #17	ENSBIXG00005025414	LAPTM4A (ENSBIXG00005025436) #18	SDC1 (ENSBIXG00005004335) #20	PUM2 (ENSBIXG00005004375) #21	ENSBIXG00005025762	RHOB (ENSBIXG00005004398) #22	HS1BP3 (ENSBIXG00005025838) #23	GDF7 (ENSBIXG00005025857) #24	LDAH (ENSBIXG00005026010) #25	APOB (ENSBIXG00005006700) #26	TDRD15 (ENSBIXG00005026149)	ENSBIXG00005026182	ENSBIXG00005005602	ENSBIXG00005026241	ENSBIXG00005026267	KLHL29 (ENSBIXG00005004508) #27	ENSBIXG00005026418	ATAD2B (ENSBIXG00005026503) #28	UBXN2A (ENSBIXG00005026562) #31	MFSD2B (ENSBIXG00005026634) #32	WDCP (ENSBIXG00005026653) #33
Bos_a	ANCESTRAL SPECIES	6	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181.e #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00550000074784.a.b	ENSGT00950000183014.f.a.h.u.a.a.a.b	ENSGT00930000152728.b.b	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908.t #35
Wild yak	MODERN SPECIES	752							NT5C1B (ENSBMUG00000005486) #13	OSR1 (ENSBMUG00000005507) #14	ENSBMUG00000005524	WDR35 (ENSBMUG00000005571) #16	MATN3 (ENSBMUG00000005603) #17	LAPTM4A (ENSBMUG00000005607) #18	SDC1 (ENSBMUG00000005608) #20	PUM2 (ENSBMUG00000005650) #21	ENSBMUG00000005710	RHOB (ENSBMUG00000005721) #22	HS1BP3 (ENSBMUG00000005770) #23	LDAH (ENSBMUG00000005822) #25	APOB (ENSBMUG00000005903) #26	TDRD15 (ENSBMUG00000005920)	ENSBMUG00000005934	ENSBMUG00000005946	ENSBMUG00000005951	ENSBMUG00000005963	KLHL29 (ENSBMUG00000005980) #27	ATAD2B (ENSBMUG00000006045) #28	UBXN2A (ENSBMUG00000006075) #31	MFSD2B (ENSBMUG00000006096) #32	WDCP (ENSBMUG00000006107) #33	FKBP1B (ENSBMUG00000006132) #34	ENSBMUG00000006141 #35
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	28	VSNL1 (ENSBGRG00000022276) #7	SMC6 (ENSBGRG00000022073) #8	GEN1 (ENSBGRG00000022034) #9	MSGN1 (ENSBGRG00000022021) #10	KCNS3 (ENSBGRG00000022008) #11	ENSBGRG00000021977 #12	NT5C1B (ENSBGRG00000021877) #13	OSR1 (ENSBGRG00000021840) #14	ENSBGRG00000021825	TTC32 (ENSBGRG00000021780) #15	WDR35 (ENSBGRG00000020967) #16	MATN3 (ENSBGRG00000020733) #17	SDC1 (ENSBGRG00000020622) #20	PUM2 (ENSBGRG00000020491) #21	ENSBGRG00000020441	ENSBGRG00000020423 #22	RHOB (ENSBGRG00000020410) #22	HS1BP3 (ENSBGRG00000020332) #23	GDF7 (ENSBGRG00000020284) #24	LDAH (ENSBGRG00000020053) #25	ENSBGRG00000019965 #26	TDRD15 (ENSBGRG00000019929)	ENSBGRG00000019916	KLHL29 (ENSBGRG00000019818) #27	ATAD2B (ENSBGRG00000019718) #28	UBXN2A (ENSBGRG00000019653) #31	MFSD2B (ENSBGRG00000019458) #32	WDCP (ENSBGRG00000019427) #33	FKBP1B (ENSBGRG00000019279) #34	TP53I3 (ENSBGRG00000019116) #36	PFN4 (ENSBGRG00000019061) #37
Domestic yak	MODERN SPECIES	28	SMC6 (ENSBGRG00000022073) #8	GEN1 (ENSBGRG00000022034) #9	MSGN1 (ENSBGRG00000022021) #10	KCNS3 (ENSBGRG00000022008) #11	ENSBGRG00000021977 #12	NT5C1B (ENSBGRG00000021877) #13	OSR1 (ENSBGRG00000021840) #14	ENSBGRG00000021825	TTC32 (ENSBGRG00000021780) #15	WDR35 (ENSBGRG00000020967) #16	MATN3 (ENSBGRG00000020733) #17	SDC1 (ENSBGRG00000020622) #20	PUM2 (ENSBGRG00000020491) #21	ENSBGRG00000020441	ENSBGRG00000020423 #22	RHOB (ENSBGRG00000020410) #22	HS1BP3 (ENSBGRG00000020332) #23	GDF7 (ENSBGRG00000020284) #24	LDAH (ENSBGRG00000020053) #25	ENSBGRG00000019965 #26	TDRD15 (ENSBGRG00000019929)	ENSBGRG00000019916	KLHL29 (ENSBGRG00000019818) #27	ATAD2B (ENSBGRG00000019718) #28	UBXN2A (ENSBGRG00000019653) #31	MFSD2B (ENSBGRG00000019458) #32	WDCP (ENSBGRG00000019427) #33	FKBP1B (ENSBGRG00000019279) #34	TP53I3 (ENSBGRG00000019116) #36	PFN4 (ENSBGRG00000019061) #37	FAM228B (ENSBGRG00000019019)
Cetacea	ANCESTRAL SPECIES	16	ENSGT00470000042500	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Blue whale	MODERN SPECIES	4	ENSBMSG00010014894	SMC6 (ENSBMSG00010014555) #8	ENSBMSG00010014350 #9	MSGN1 (ENSBMSG00010014319) #10	KCNS3 (ENSBMSG00010014305) #11	RDH14 (ENSBMSG00010014286) #12	NT5C1B (ENSBMSG00010014150) #13	OSR1 (ENSBMSG00010014098) #14	TTC32 (ENSBMSG00010014051) #15	WDR35 (ENSBMSG00010013819) #16	MATN3 (ENSBMSG00010013735) #17	LAPTM4A (ENSBMSG00010013698) #18	SDC1 (ENSBMSG00010013669) #20	ENSBMSG00010013651	PUM2 (ENSBMSG00010013534) #21	RHOB (ENSBMSG00010013496) #22	HS1BP3 (ENSBMSG00010013470) #23	GDF7 (ENSBMSG00010013453) #24	LDAH (ENSBMSG00010013418) #25	ENSBMSG00010013370 #26	ENSBMSG00010013332	KLHL29 (ENSBMSG00010013307) #27	ATAD2B (ENSBMSG00010013251) #28	ENSBMSG00010013222	UBXN2A (ENSBMSG00010013209) #31	MFSD2B (ENSBMSG00010013171) #32	WDCP (ENSBMSG00010013158) #33	FKBP1B (ENSBMSG00010013149) #34	SF3B6 (ENSBMSG00010013141) #35	TP53I3 (ENSBMSG00010013124) #36	ENSBMSG00010013113
Odontoceti	ANCESTRAL SPECIES	15	ENSGT00470000042500	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Sperm whale	MODERN SPECIES	3	ENSPCTG00005015400	FAM49A (ENSPCTG00005015455)	RAD51AP2 (ENSPCTG00005015523)	VSNL1 (ENSPCTG00005015591) #7	SMC6 (ENSPCTG00005015640) #8	GEN1 (ENSPCTG00005015707) #9	MSGN1 (ENSPCTG00005015740) #10	KCNS3 (ENSPCTG00005015770) #11	RDH14 (ENSPCTG00005015784) #12	NT5C1B (ENSPCTG00005015828) #13	WDR35 (ENSPCTG00005016075) #16	MATN3 (ENSPCTG00005016290) #17	LAPTM4A (ENSPCTG00005016508) #18	ENSPCTG00005016545	PUM2 (ENSPCTG00005016650) #21	RHOB (ENSPCTG00005016876) #22	ENSPCTG00005016911 #23	GDF7 (ENSPCTG00005016929) #24	LDAH (ENSPCTG00005016984) #25	KLHL29 (ENSPCTG00005017130) #27	ATAD2B (ENSPCTG00005017541) #28	UBXN2A (ENSPCTG00005017638) #31	MFSD2B (ENSPCTG00005017691) #32	WDCP (ENSPCTG00005017956) #33	FKBP1B (ENSPCTG00005017988) #34	SF3B6 (ENSPCTG00005018047) #35	FAM228B (ENSPCTG00005018071)	PFN4 (ENSPCTG00005018269) #37	ITSN2 (ENSPCTG00005018639)	NCOA1 (ENSPCTG00005020989)	ENSPCTG00005021078
Odontoceti_a	ANCESTRAL SPECIES	12	ENSGT00470000042500	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Dolphin	MODERN SPECIES	5299																RHOB (ENSTTRG00000005690) #22
Odontoceti_b	ANCESTRAL SPECIES	15	ENSGT00470000042500	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b
Vaquita	MODERN SPECIES	4	RAD51AP2 (ENSPSNG00000005244)	VSNL1 (ENSPSNG00000005265) #7	SMC6 (ENSPSNG00000005297) #8	GEN1 (ENSPSNG00000005368) #9	MSGN1 (ENSPSNG00000005383) #10	KCNS3 (ENSPSNG00000005395) #11	RDH14 (ENSPSNG00000005407) #12	NT5C1B (ENSPSNG00000005430) #13	OSR1 (ENSPSNG00000005478) #14	TTC32 (ENSPSNG00000005497) #15	WDR35 (ENSPSNG00000005538) #16	MATN3 (ENSPSNG00000005606) #17	LAPTM4A (ENSPSNG00000005648) #18	SDC1 (ENSPSNG00000005664) #20	PUM2 (ENSPSNG00000005720) #21	RHOB (ENSPSNG00000005853) #22	HS1BP3 (ENSPSNG00000005889) #23	GDF7 (ENSPSNG00000005912) #24	LDAH (ENSPSNG00000005977) #25	APOB (ENSPSNG00000006093) #26	KLHL29 (ENSPSNG00000006365) #27	ATAD2B (ENSPSNG00000006447) #28	UBXN2A (ENSPSNG00000006489) #31	MFSD2B (ENSPSNG00000006537) #32	WDCP (ENSPSNG00000006641) #33	FKBP1B (ENSPSNG00000006673) #34	SF3B6 (ENSPSNG00000006711) #35	TP53I3 (ENSPSNG00000006747) #36	FAM228B (ENSPSNG00000006789)	PFN4 (ENSPSNG00000006828) #37	ENSPSNG00000006856
Monodontidae	ANCESTRAL SPECIES	13	ENSGT00470000042500	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b
Beluga whale	MODERN SPECIES	37	VSNL1 (ENSDLEG00000003903) #7	SMC6 (ENSDLEG00000003874) #8	GEN1 (ENSDLEG00000003850) #9	MSGN1 (ENSDLEG00000003842) #10	KCNS3 (ENSDLEG00000003837) #11	RDH14 (ENSDLEG00000003827) #12	NT5C1B (ENSDLEG00000003811) #13	OSR1 (ENSDLEG00000003804) #14	ENSDLEG00000003800	TTC32 (ENSDLEG00000003795) #15	WDR35 (ENSDLEG00000003761) #16	MATN3 (ENSDLEG00000003741) #17	LAPTM4A (ENSDLEG00000003732) #18	SDC1 (ENSDLEG00000003726) #20	PUM2 (ENSDLEG00000003713) #21	RHOB (ENSDLEG00000003706) #22	HS1BP3 (ENSDLEG00000003696) #23	GDF7 (ENSDLEG00000003664) #24	LDAH (ENSDLEG00000003656) #25	APOB (ENSDLEG00000003485) #26	KLHL29 (ENSDLEG00000003396) #27	ENSDLEG00000003376 #28	ENSDLEG00000003368 #28	UBXN2A (ENSDLEG00000003355) #31	MFSD2B (ENSDLEG00000003286) #32	WDCP (ENSDLEG00000003277) #33	FKBP1B (ENSDLEG00000003261) #34	SF3B6 (ENSDLEG00000003252) #35	TP53I3 (ENSDLEG00000003236) #36	PFN4 (ENSDLEG00000003231) #37	FAM228B (ENSDLEG00000003177)
Narwhal	MODERN SPECIES	305	RAD51AP2 (ENSMMNG00015005739)	VSNL1 (ENSMMNG00015005727) #7	SMC6 (ENSMMNG00015005666) #8	GEN1 (ENSMMNG00015005619) #9	MSGN1 (ENSMMNG00015005600) #10	KCNS3 (ENSMMNG00015005585) #11	RDH14 (ENSMMNG00015005575) #12	NT5C1B (ENSMMNG00015005540) #13	OSR1 (ENSMMNG00015005525) #14	TTC32 (ENSMMNG00015005504) #15	WDR35 (ENSMMNG00015005480) #16	MATN3 (ENSMMNG00015005436) #17	LAPTM4A (ENSMMNG00015005414) #18	SDC1 (ENSMMNG00015005397) #20	PUM2 (ENSMMNG00015008879) #21	RHOB (ENSMMNG00015008862) #22	HS1BP3 (ENSMMNG00015008848) #23	GDF7 (ENSMMNG00015008839) #24	LDAH (ENSMMNG00015008820) #25	APOB (ENSMMNG00015008780) #26	KLHL29 (ENSMMNG00015008756) #27	ATAD2B (ENSMMNG00015008735) #28	UBXN2A (ENSMMNG00015008718) #31	MFSD2B (ENSMMNG00015008694) #32	WDCP (ENSMMNG00015008672) #33	FKBP1B (ENSMMNG00015008655) #34	SF3B6 (ENSMMNG00015008636) #35	TP53I3 (ENSMMNG00015008625) #36	PFN4 (ENSMMNG00015008611) #37	FAM228B (ENSMMNG00015008593)	ENSMMNG00015008570
Laurasiatheria_b	ANCESTRAL SPECIES	17	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Laurasiatheria_c	ANCESTRAL SPECIES	14	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Equus	ANCESTRAL SPECIES	7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT01090000263317.a	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT01100000265002	ENSGT00940000170401	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Horse	MODERN SPECIES	6	SMC6 (ENSECAG00000022265) #8	GEN1 (ENSECAG00000020295) #9	MSGN1 (ENSECAG00000002724) #10	KCNS3 (ENSECAG00000019779) #11	RDH14 (ENSECAG00000045905) #12	NT5C1B (ENSECAG00000014033) #13	OSR1 (ENSECAG00000013593) #14	TTC32 (ENSECAG00000013048) #15	WDR35 (ENSECAG00000018258) #16	MATN3 (ENSECAG00000017085) #17	SDC1 (ENSECAG00000014709) #20	ENSECAG00000045674	PUM2 (ENSECAG00000021930) #21	ENSECAG00000021922	ENSECAG00000032315	RHOB (ENSECAG00000051165) #22	HS1BP3 (ENSECAG00000021502) #23	GDF7 (ENSECAG00000021083) #24	ENSECAG00000058266	LDAH (ENSECAG00000020412) #25	APOB (ENSECAG00000008600) #26	TDRD15 (ENSECAG00000008581)	ENSECAG00000034152	ENSECAG00000032306	ENSECAG00000038636	ENSECAG00000033565	ENSECAG00000046858	KLHL29 (ENSECAG00000007032) #27	ATAD2B (ENSECAG00000023573) #28	ENSECAG00000002550	UBXN2A (ENSECAG00000020144) #31
Donkey	MODERN SPECIES	26	SMC6 (ENSEASG00005009355) #8	GEN1 (ENSEASG00005023619) #9	MSGN1 (ENSEASG00005009364) #10	KCNS3 (ENSEASG00005009368) #11	RDH14 (ENSEASG00005029880) #12	NT5C1B (ENSEASG00005009376) #13	OSR1 (ENSEASG00005009388) #14	TTC32 (ENSEASG00005026368) #15	WDR35 (ENSEASG00005009400) #16	MATN3 (ENSEASG00005009408) #17	LAPTM4A (ENSEASG00005009414) #18	SDC1 (ENSEASG00005009418) #20	PUM2 (ENSEASG00005009429) #21	ENSEASG00005009442	ENSEASG00005027331	RHOB (ENSEASG00005009448) #22	HS1BP3 (ENSEASG00005009454) #23	GDF7 (ENSEASG00005009457) #24	LDAH (ENSEASG00005009459) #25	APOB (ENSEASG00005009466) #26	TDRD15 (ENSEASG00005034301)	ENSEASG00005009474	ENSEASG00005009477	ENSEASG00005009479	KLHL29 (ENSEASG00005009482) #27	ATAD2B (ENSEASG00005009516) #28	UBXN2A (ENSEASG00005009983) #31	MFSD2B (ENSEASG00005009987) #32	WDCP (ENSEASG00005009991) #33	ENSEASG00005038315 #34	SF3B6 (ENSEASG00005026473) #35
Chiroptera	ANCESTRAL SPECIES	10	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Microchiroptera	ANCESTRAL SPECIES	14	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Microbat	MODERN SPECIES	1031						RDH14 (ENSMLUG00000024368) #12	NT5C1B (ENSMLUG00000015910) #13	OSR1 (ENSMLUG00000011374) #14	TTC32 (ENSMLUG00000001415) #15	WDR35 (ENSMLUG00000001419) #16	MATN3 (ENSMLUG00000003456) #17	LAPTM4A (ENSMLUG00000001596) #18	SDC1 (ENSMLUG00000007349) #20	PUM2 (ENSMLUG00000007362) #21	ENSMLUG00000023764	RHOB (ENSMLUG00000001627) #22	ENSMLUG00000005981	HS1BP3 (ENSMLUG00000022201) #23	ENSMLUG00000027645 #24	LDAH (ENSMLUG00000007792) #25	ENSMLUG00000029392	APOB (ENSMLUG00000007812) #26	TDRD15 (ENSMLUG00000007897)	KLHL29 (ENSMLUG00000004470) #27	ATAD2B (ENSMLUG00000004476) #28	UBXN2A (ENSMLUG00000015640) #31	ENSMLUG00000013466 #32	ENSMLUG00000030749	WDCP (ENSMLUG00000013485) #33	ENSMLUG00000030564 #34	SF3B6 (ENSMLUG00000002473) #35
Greater horseshoe bat	MODERN SPECIES	4	VSNL1 (ENSRFEG00010006243) #7	SMC6 (ENSRFEG00010006174) #8	GEN1 (ENSRFEG00010006120) #9	MSGN1 (ENSRFEG00010006094) #10	KCNS3 (ENSRFEG00010006076) #11	RDH14 (ENSRFEG00010006059) #12	NT5C1B (ENSRFEG00010006003) #13	OSR1 (ENSRFEG00010005966) #14	TTC32 (ENSRFEG00010005945) #15	WDR35 (ENSRFEG00010005857) #16	MATN3 (ENSRFEG00010005757) #17	LAPTM4A (ENSRFEG00010005720) #18	SDC1 (ENSRFEG00010005688) #20	ENSRFEG00010005671	PUM2 (ENSRFEG00010005562) #21	RHOB (ENSRFEG00010005478) #22	HS1BP3 (ENSRFEG00010005461) #23	GDF7 (ENSRFEG00010005440) #24	LDAH (ENSRFEG00010005397) #25	APOB (ENSRFEG00010005349) #26	ENSRFEG00010005311	KLHL29 (ENSRFEG00010005296) #27	ATAD2B (ENSRFEG00010005280) #28	UBXN2A (ENSRFEG00010005270) #31	MFSD2B (ENSRFEG00010005251) #32	WDCP (ENSRFEG00010018155) #33	FKBP1B (ENSRFEG00010018043) #34	SF3B6 (ENSRFEG00010018003) #35	TP53I3 (ENSRFEG00010017946) #36	ENSRFEG00010017885 #37	FAM228B (ENSRFEG00010017803)
Megabat	MODERN SPECIES	7122																RHOB (ENSPVAG00000012227) #22
Carnivora	ANCESTRAL SPECIES	19	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Felidae	ANCESTRAL SPECIES	3	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b.c #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Panthera	DUPLICATION
Panthera	DUPLICATION
Panthera	ANCESTRAL SPECIES	2	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b.c #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b.l #22	ENSGT00950000182945.b.a.a.b.b.b.k.a #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00390000003628.b	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Tiger	MODERN SPECIES	149	SMC6 (ENSPTIG00000001154) #8	GEN1 (ENSPTIG00000007224) #9	MSGN1 (ENSPTIG00000006467) #10	KCNS3 (ENSPTIG00000006472) #11	RDH14 (ENSPTIG00000010724) #12	NT5C1B (ENSPTIG00000011201) #13	OSR1 (ENSPTIG00000012004) #14	TTC32 (ENSPTIG00000012474) #15	WDR35 (ENSPTIG00000012685) #16	MATN3 (ENSPTIG00000015261) #17	LAPTM4A (ENSPTIG00000016492) #18	SDC1 (ENSPTIG00000017404) #20	ENSPTIG00000018625	PUM2 (ENSPTIG00000018982) #21	ENSPTIG00000000251	RHOB (ENSPTIG00000006084) #22	HS1BP3 (ENSPTIG00000010200) #23	LDAH (ENSPTIG00000011369) #25	APOB (ENSPTIG00000012825) #26	ENSPTIG00000017235	TDRD15 (ENSPTIG00000006858)	ENSPTIG00000018573	KLHL29 (ENSPTIG00000019549) #27	ATAD2B (ENSPTIG00000020553) #28	UBXN2A (ENSPTIG00000006975) #31	MFSD2B (ENSPTIG00000008501) #32	WDCP (ENSPTIG00000011327) #33	FKBP1B (ENSPTIG00000011970) #34	SF3B6 (ENSPTIG00000013322) #35	TP53I3 (ENSPTIG00000013975) #36	PFN4 (ENSPTIG00000017288) #37
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b.c #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b.l #22	ENSGT00950000182945.b.a.a.b.b.b.k.a #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00390000003628.b	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
leopard	MODERN SPECIES		MSGN1 (ENSPPRG00000020043) #10	ENSPPRG00000020962	KCNS3 (ENSPPRG00000020060) #11	RDH14 (ENSPPRG00000020986) #12	NT5C1B (ENSPPRG00000021030) #13	OSR1 (ENSPPRG00000021067) #14	TTC32 (ENSPPRG00000021136) #15	WDR35 (ENSPPRG00000021186) #16	MATN3 (ENSPPRG00000021301) #17	LAPTM4A (ENSPPRG00000021333) #18	SDC1 (ENSPPRG00000021362) #20	ENSPPRG00000021380	PUM2 (ENSPPRG00000021443) #21	ENSPPRG00000021503	ENSPPRG00000020084 #22	ENSPPRG00000021519 #22	HS1BP3 (ENSPPRG00000021577) #23	GDF7 (ENSPPRG00000021614) #24	LDAH (ENSPPRG00000021658) #25	APOB (ENSPPRG00000021875) #26	TDRD15 (ENSPPRG00000020099)	ENSPPRG00000021960	ENSPPRG00000021990	KLHL29 (ENSPPRG00000022044) #27	ATAD2B (ENSPPRG00000022083) #28	UBXN2A (ENSPPRG00000022151) #31	MFSD2B (ENSPPRG00000022250) #32	WDCP (ENSPPRG00000022296) #33	FKBP1B (ENSPPRG00000023267) #34	SF3B6 (ENSPPRG00000023257) #35	TP53I3 (ENSPPRG00000023247) #36
Panthera	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.b.k.b #22
Panthera_a	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.b.k.b #22
leopard	MODERN SPECIES		GEN1 (ENSPPRG00000020921) #9	MSGN1 (ENSPPRG00000020043) #10	ENSPPRG00000020962	KCNS3 (ENSPPRG00000020060) #11	RDH14 (ENSPPRG00000020986) #12	NT5C1B (ENSPPRG00000021030) #13	OSR1 (ENSPPRG00000021067) #14	TTC32 (ENSPPRG00000021136) #15	WDR35 (ENSPPRG00000021186) #16	MATN3 (ENSPPRG00000021301) #17	LAPTM4A (ENSPPRG00000021333) #18	SDC1 (ENSPPRG00000021362) #20	ENSPPRG00000021380	PUM2 (ENSPPRG00000021443) #21	ENSPPRG00000021503	ENSPPRG00000020084 #22	ENSPPRG00000021519 #22	HS1BP3 (ENSPPRG00000021577) #23	GDF7 (ENSPPRG00000021614) #24	LDAH (ENSPPRG00000021658) #25	APOB (ENSPPRG00000021875) #26	TDRD15 (ENSPPRG00000020099)	ENSPPRG00000021960	ENSPPRG00000021990	KLHL29 (ENSPPRG00000022044) #27	ATAD2B (ENSPPRG00000022083) #28	UBXN2A (ENSPPRG00000022151) #31	MFSD2B (ENSPPRG00000022250) #32	WDCP (ENSPPRG00000022296) #33	FKBP1B (ENSPPRG00000023267) #34	SF3B6 (ENSPPRG00000023257) #35
Panthera	ANCESTRAL SPECIES	2	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b.c #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b.l #22	ENSGT00950000182945.b.a.a.b.b.b.k.a #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00390000003628.b	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b.c #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b.l #22	ENSGT00950000182945.b.a.a.b.b.b.k.a #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00390000003628.b	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36
lion	MODERN SPECIES	3	SMC6 (ENSPLOG00000004301) #8	GEN1 (ENSPLOG00000004334) #9	MSGN1 (ENSPLOG00000004343) #10	KCNS3 (ENSPLOG00000004351) #11	RDH14 (ENSPLOG00000004360) #12	NT5C1B (ENSPLOG00000004380) #13	OSR1 (ENSPLOG00000004407) #14	TTC32 (ENSPLOG00000004421) #15	WDR35 (ENSPLOG00000004441) #16	MATN3 (ENSPLOG00000004487) #17	ENSPLOG00000004505 #18	SDC1 (ENSPLOG00000004513) #20	ENSPLOG00000004519	PUM2 (ENSPLOG00000004537) #21	ENSPLOG00000004582	RHOB (ENSPLOG00000004676) #22	HS1BP3 (ENSPLOG00000004714) #23	GDF7 (ENSPLOG00000004729) #24	LDAH (ENSPLOG00000004752) #25	APOB (ENSPLOG00000004809) #26	TDRD15 (ENSPLOG00000000249)	ENSPLOG00000000267	KLHL29 (ENSPLOG00000000329) #27	ATAD2B (ENSPLOG00000000487) #28	UBXN2A (ENSPLOG00000000531) #31	MFSD2B (ENSPLOG00000000549) #32	WDCP (ENSPLOG00000000585) #33	FKBP1B (ENSPLOG00000000677) #34	SF3B6 (ENSPLOG00000000707) #35	TP53I3 (ENSPLOG00000000741) #36	PFN4 (ENSPLOG00000000771) #37
Caniformia	ANCESTRAL SPECIES	18	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Caniformia_b	ANCESTRAL SPECIES	11	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908.y #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Mustelinae	ANCESTRAL SPECIES	55	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908.y #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
American mink	MODERN SPECIES	7	ENSNVIG00000013510	KCNS3 (ENSNVIG00000013506) #11	RDH14 (ENSNVIG00000013495) #12	NT5C1B (ENSNVIG00000013468) #13	ENSNVIG00000013455	OSR1 (ENSNVIG00000013439) #14	TTC32 (ENSNVIG00000013413) #15	WDR35 (ENSNVIG00000013269) #16	MATN3 (ENSNVIG00000013221) #17	LAPTM4A (ENSNVIG00000013199) #18	SDC1 (ENSNVIG00000013190) #20	ENSNVIG00000013188	ENSNVIG00000013176	PUM2 (ENSNVIG00000013016) #21	ENSNVIG00000012955	RHOB (ENSNVIG00000012943) #22	ENSNVIG00000012923 #23	ENSNVIG00000012914 #24	ENSNVIG00000012897 #24	B5MDU6 (ENSNVIG00000012863) #25	APOB (ENSNVIG00000012830) #26	TDRD15 (ENSNVIG00000012820)	ENSNVIG00000012796	ENSNVIG00000012791	KLHL29 (ENSNVIG00000012776) #27	ATAD2B (ENSNVIG00000012717) #28	UBXN2A (ENSNVIG00000012711) #31	MFSD2B (ENSNVIG00000012679) #32	WDCP (ENSNVIG00000012667) #33	ENSNVIG00000012661	ENSNVIG00000012654 #35
Ferret	MODERN SPECIES	178	VSNL1 (ENSMPUG00000013641) #7	SMC6 (ENSMPUG00000013644) #8	GEN1 (ENSMPUG00000013651) #9	MSGN1 (ENSMPUG00000019484) #10	KCNS3 (ENSMPUG00000019486) #11	RDH14 (ENSMPUG00000013659) #12	NT5C1B (ENSMPUG00000013662) #13	OSR1 (ENSMPUG00000013697) #14	TTC32 (ENSMPUG00000013701) #15	WDR35 (ENSMPUG00000013708) #16	MATN3 (ENSMPUG00000013713) #17	LAPTM4A (ENSMPUG00000013714) #18	SDC1 (ENSMPUG00000013732) #20	PUM2 (ENSMPUG00000013734) #21	ENSMPUG00000013736	RHOB (ENSMPUG00000019487) #22	HS1BP3 (ENSMPUG00000013739) #23	GDF7 (ENSMPUG00000013742) #24	LDAH (ENSMPUG00000013748) #25	APOB (ENSMPUG00000013749) #26	TDRD15 (ENSMPUG00000013753)	KLHL29 (ENSMPUG00000013755) #27	ATAD2B (ENSMPUG00000013855) #28	UBXN2A (ENSMPUG00000013862) #31	MFSD2B (ENSMPUG00000013875) #32	WDCP (ENSMPUG00000013937) #33	FKBP1B (ENSMPUG00000013941) #34	SF3B6 (ENSMPUG00000013957) #35	TP53I3 (ENSMPUG00000013959) #36	PFN4 (ENSMPUG00000013981) #37	FAM228B (ENSMPUG00000013988)
Ursidae	ANCESTRAL SPECIES	9	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b.f #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b.d #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908.y #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a
Ursus	ANCESTRAL SPECIES	27	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b.f #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b.d #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908.y #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b
American black bear	MODERN SPECIES	148															ENSUAMG00000007308	RHOB (ENSUAMG00000007296) #22	HS1BP3 (ENSUAMG00000007294) #23
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	14	VSNL1 (ENSAMEG00000011624) #7	SMC6 (ENSAMEG00000002654) #8	GEN1 (ENSAMEG00000002666) #9	MSGN1 (ENSAMEG00000019874) #10	KCNS3 (ENSAMEG00000019878) #11	NT5C1B (ENSAMEG00000002686) #13	OSR1 (ENSAMEG00000002708) #14	TTC32 (ENSAMEG00000002717) #15	WDR35 (ENSAMEG00000002724) #16	MATN3 (ENSAMEG00000002771) #17	LAPTM4A (ENSAMEG00000002787) #18	SDC1 (ENSAMEG00000002804) #20	ENSAMEG00000025209	PUM2 (ENSAMEG00000002823) #21	ENSAMEG00000002884	RHOB (ENSAMEG00000019884) #22	ENSAMEG00000025415 #23	ENSAMEG00000002904 #24	LDAH (ENSAMEG00000029431) #25	APOB (ENSAMEG00000013086) #26	TDRD15 (ENSAMEG00000029907)	KLHL29 (ENSAMEG00000002886) #27	ATAD2B (ENSAMEG00000002853) #28	UBXN2A (ENSAMEG00000002843) #31	MFSD2B (ENSAMEG00000002807) #32	WDCP (ENSAMEG00000002801) #33	FKBP1B (ENSAMEG00000029795) #34	SF3B6 (ENSAMEG00000002786) #35	TP53I3 (ENSAMEG00000002781) #36	PFN4 (ENSAMEG00000002778) #37	ENSAMEG00000025446
Giant Panda	MODERN SPECIES	1299																ENSAMEG00000030106 #22
Canidae	ANCESTRAL SPECIES	46	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00980000202730	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00940000153609.b.w.b	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Red fox	MODERN SPECIES	107	MSGN1 (ENSVVUG00000014790) #10	KCNS3 (ENSVVUG00000014792) #11	ENSVVUG00000014794	RDH14 (ENSVVUG00000014797) #12	NT5C1B (ENSVVUG00000014799) #13	OSR1 (ENSVVUG00000014812) #14	ENSVVUG00000014817 #15	WDR35 (ENSVVUG00000014818) #16	MATN3 (ENSVVUG00000014820) #17	LAPTM4A (ENSVVUG00000014821) #18	SDC1 (ENSVVUG00000014823) #20	ENSVVUG00000014826	PUM2 (ENSVVUG00000014829) #21	ENSVVUG00000014837	ENSVVUG00000014838	RHOB (ENSVVUG00000014839) #22	HS1BP3 (ENSVVUG00000014842) #23	LDAH (ENSVVUG00000014846) #25	APOB (ENSVVUG00000014850) #26	TDRD15 (ENSVVUG00000014860)	ENSVVUG00000014880	KLHL29 (ENSVVUG00000014884) #27	ATAD2B (ENSVVUG00000014891) #28	ENSVVUG00000014896	UBXN2A (ENSVVUG00000014898) #31
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00980000202468	ENSGT00980000202730	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00940000153609.b.w.b	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Dingo	MODERN SPECIES	223	ENSCAFG00020026044 #9	MSGN1 (ENSCAFG00020026040) #10	KCNS3 (ENSCAFG00020026039) #11	ENSCAFG00020026037	RDH14 (ENSCAFG00020026035) #12	NT5C1B (ENSCAFG00020026028) #13	OSR1 (ENSCAFG00020026025) #14	TTC32 (ENSCAFG00020026024) #15	WDR35 (ENSCAFG00020025847) #16	LAPTM4A (ENSCAFG00020025761) #18	SDC1 (ENSCAFG00020025760) #20	ENSCAFG00020025758	PUM2 (ENSCAFG00020025689) #21	ENSCAFG00020025683	ENSCAFG00020025680	RHOB (ENSCAFG00020025677) #22	HS1BP3 (ENSCAFG00020025673) #23	GDF7 (ENSCAFG00020025671) #24	LDAH (ENSCAFG00020025670) #25	APOB (ENSCAFG00020025649) #26	TDRD15 (ENSCAFG00020025627)	KLHL29 (ENSCAFG00020025619) #27	ENSCAFG00020025616	ATAD2B (ENSCAFG00020025604) #28	ENSCAFG00020025601 #31	MFSD2B (ENSCAFG00020025582) #32	WDCP (ENSCAFG00020025578) #33	FKBP1B (ENSCAFG00020025577) #34	SF3B6 (ENSCAFG00020025576) #35	TP53I3 (ENSCAFG00020025575) #36	PFN4 (ENSCAFG00020025574) #37
Dog	MODERN SPECIES	8	GEN1 (ENSCAFG00845017081) #9	MSGN1 (ENSCAFG00845017161) #10	KCNS3 (ENSCAFG00845017227) #11	ENSCAFG00845017269	ENSCAFG00845017291	NT5C1B (ENSCAFG00845017330) #12	NT5C1B (ENSCAFG00845017369) #13	OSR1 (ENSCAFG00845017551) #14	TTC32 (ENSCAFG00845017602) #15	WDR35 (ENSCAFG00845017734) #16	MATN3 (ENSCAFG00845018475) #17	MATN3 (ENSCAFG00845018598) #18	SDC1 (ENSCAFG00845018675) #20	PUM2 (ENSCAFG00845018880) #21	ENSCAFG00845019715	RHOB (ENSCAFG00845019784) #22	HS1BP3 (ENSCAFG00845019848) #23	GDF7 (ENSCAFG00845020009) #24	LDAH (ENSCAFG00845020079) #25	APOB (ENSCAFG00845020315) #26	TDRD15 (ENSCAFG00845020461)	KLHL29 (ENSCAFG00845020825) #27	ATAD2B (ENSCAFG00845021031) #28	ENSCAFG00845021908	ENSCAFG00845021952 #31	ENSCAFG00845022118 #32	WDCP (ENSCAFG00845022467) #33	FKBP1B (ENSCAFG00845022652) #34	ENSCAFG00845022727 #35	SF3B6 (ENSCAFG00845022757) #35	TP53I3 (ENSCAFG00845022815) #36
Atlantogenata	ANCESTRAL SPECIES	14	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b
Xenarthra	ANCESTRAL SPECIES	1523																ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24
Armadillo	MODERN SPECIES	1890																RHOB (ENSDNOG00000045615) #22	HS1BP3 (ENSDNOG00000040560) #23	ENSDNOG00000044453 #24
Afrotheria	ANCESTRAL SPECIES	26	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b
Tenrec	MODERN SPECIES	15296																RHOB (ENSETEG00000007301) #22
Afrotheria_a	ANCESTRAL SPECIES	26	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185.a	ENSGT00530000064185.b
Hyrax	MODERN SPECIES	8854																ENSPCAG00000011302 #22
Elephant	MODERN SPECIES	197	ENSLAFG00000029496	ENSLAFG00000028092	KCNS3 (ENSLAFG00000021521) #11	RDH14 (ENSLAFG00000022569) #12	NT5C1B (ENSLAFG00000007746) #13	OSR1 (ENSLAFG00000027174) #14	ENSLAFG00000027572	ENSLAFG00000030361	TTC32 (ENSLAFG00000014830) #15	WDR35 (ENSLAFG00000014834) #16	MATN3 (ENSLAFG00000014853) #17	LAPTM4A (ENSLAFG00000013774) #18	SDC1 (ENSLAFG00000022920) #20	PUM2 (ENSLAFG00000009278) #21	ENSLAFG00000030177	RHOB (ENSLAFG00000000243) #22	HS1BP3 (ENSLAFG00000013276) #23	GDF7 (ENSLAFG00000021797) #24	APOB (ENSLAFG00000009232) #26	TDRD15 (ENSLAFG00000026920)	KLHL29 (ENSLAFG00000013813) #27	ATAD2B (ENSLAFG00000016605) #28	UBXN2A (ENSLAFG00000017493) #31	MFSD2B (ENSLAFG00000023340) #32	WDCP (ENSLAFG00000017499) #33	FKBP1B (ENSLAFG00000005196) #34	SF3B6 (ENSLAFG00000029423) #35	TP53I3 (ENSLAFG00000017221) #36	PFN4 (ENSLAFG00000025557) #37	FAM228B (ENSLAFG00000020782)	ENSLAFG00000000618
Marsupialia	ANCESTRAL SPECIES	35	ENSGT00550000074816.A.a.f #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688.s #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185
Marsupialia_b	ANCESTRAL SPECIES	23	ENSGT00550000074816.A.a.f #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092.b #23	ENSGT00940000160140.b #24	ENSGT00390000009688.s #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660 #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37	ENSGT00530000064185
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000030834	CYRIA (ENSSHAG00000031827)	ENSSHAG00000030057	VSNL1 (ENSSHAG00000030993) #7	ENSSHAG00000004113 #8	ENSSHAG00000020514 #9	KCNS3 (ENSSHAG00000001315) #11	RDH14 (ENSSHAG00000009042) #12	ENSSHAG00000008640 #13	WDR35 (ENSSHAG00000007255) #16	MATN3 (ENSSHAG00000006973) #17	LAPTM4A (ENSSHAG00000006571) #18	ENSSHAG00000031833	PUM2 (ENSSHAG00000002778) #21	ENSSHAG00000000746	RHOB (ENSSHAG00000031379) #22	ENSSHAG00000007625 #23	GDF7 (ENSSHAG00000024813) #24	ENSSHAG00000025983 #25	ENSSHAG00000006797 #25	APOB (ENSSHAG00000002807) #26	TDRD15 (ENSSHAG00000023534)	ENSSHAG00000021453	KLHL29 (ENSSHAG00000005480) #27	ATAD2B (ENSSHAG00000006260) #28	UBXN2A (ENSSHAG00000028943) #31	ENSSHAG00000030174 #32	ENSSHAG00000024773 #32	FKBP1B (ENSSHAG00000003019) #34	SF3B6 (ENSSHAG00000026933) #35	ENSSHAG00000025779 #33
Diprotodontia	ANCESTRAL SPECIES	35	ENSGT00550000074816.A.a.f #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092.b #23	ENSGT00940000160140.b #24	ENSGT00390000009688.s #25	ENSGT00590000083139 #26	ENSGT00940000162581
Diprotodontia_a	ANCESTRAL SPECIES	34	ENSGT00550000074816.A.a.f #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092.b #23	ENSGT00940000160140.b #24	ENSGT00390000009688.s #25	ENSGT00590000083139 #26	ENSGT00940000162581
Common wonbat	MODERN SPECIES	694	VSNL1 (ENSVURG00010023772) #7	ENSVURG00010023775 #8	GEN1 (ENSVURG00010023780) #9	MSGN1 (ENSVURG00010023787) #10	KCNS3 (ENSVURG00010023790) #11	RDH14 (ENSVURG00010023793) #12	ENSVURG00010023796 #13	ENSVURG00010023800 #14	TTC32 (ENSVURG00010023802) #15	WDR35 (ENSVURG00010023804) #16	LAPTM4A (ENSVURG00010023811) #18	ENSVURG00010023814 #20	ENSVURG00010023816	PUM2 (ENSVURG00010023817) #21	ENSVURG00010023821	RHOB (ENSVURG00010023826) #22
koala	MODERN SPECIES	175	ENSPCIG00000029439 #8	ENSPCIG00000029438 #9	MSGN1 (ENSPCIG00000029437) #10	KCNS3 (ENSPCIG00000029436) #11	RDH14 (ENSPCIG00000024554) #12	ENSPCIG00000016776 #13	OSR1 (ENSPCIG00000011035) #14	TTC32 (ENSPCIG00000035406) #15	ENSPCIG00000022097 #16	MATN3 (ENSPCIG00000016627) #17	LAPTM4A (ENSPCIG00000016629) #18	ENSPCIG00000035866 #20	ENSPCIG00000022138	PUM2 (ENSPCIG00000022139) #21	ENSPCIG00000022147	RHOB (ENSPCIG00000036417) #22	ENSPCIG00000022157 #23	GDF7 (ENSPCIG00000036380) #24	ENSPCIG00000022174 #25	APOB (ENSPCIG00000008641) #26	TDRD15 (ENSPCIG00000007414)
Wallaby	MODERN SPECIES	11968																RHOB (ENSMEUG00000000058) #22
Platypus	DUPLICATION
Platypus	MODERN SPECIES	20	ENSOANG00000041695 #15	APMAP (ENSOANG00000038065)	ENSOANG00000040205	ACSS1 (ENSOANG00000003805)	ENSOANG00000046868	ENTPD6 (ENSOANG00000021164)	PYGB (ENSOANG00000009608)	ABHD12 (ENSOANG00000042191)	GINS1 (ENSOANG00000004118)	ENSOANG00000039988	PUM2 (ENSOANG00000005907) #21	ENSOANG00000001136 #20	LAPTM4A (ENSOANG00000001105) #18	MATN3 (ENSOANG00000037447) #17	WDR35 (ENSOANG00000047974) #16	RHOB (ENSOANG00000008835) #22	ENSOANG00000004402 #23	ENSOANG00000015095 ##24	LDAH (ENSOANG00000020206) #25	APOB (ENSOANG00000003378) #26	ENSOANG00000047651	KLHL29 (ENSOANG00000007620) #27	ATAD2B (ENSOANG00000007622) #28	UBXN2A (ENSOANG00000042505) #31	MFSD2B (ENSOANG00000007625) #32	ENSOANG00000007626 #33	ENSOANG00000048768 #34	SF3B6 (ENSOANG00000044973) #35	TP53I3 (ENSOANG00000007628) #36	ENSOANG00000007629 #37	ITSN2 (ENSOANG00000004681)
Platypus	MODERN SPECIES	17	MBNL3 (ENSOANG00000011697)	RAP2C (ENSOANG00000011699)	FRMD7 (ENSOANG00000011700)	STK26 (ENSOANG00000011701)	IL13RA1 (ENSOANG00000019956)	DOCK11 (ENSOANG00000012828)	ENSOANG00000039307	ARAF (ENSOANG00000012826)	SYN1 (ENSOANG00000021601)	CFP (ENSOANG00000005657)	ENSOANG00000036830	ENSOANG00000014214	ENSOANG00000040667	USP11 (ENSOANG00000003109)	CDK16 (ENSOANG00000003108)	ENSOANG00000050430 #22	UBA1 (ENSOANG00000036317)	ENSOANG00000004553	NDUFB11 (ENSOANG00000037175)	ENSOANG00000046222	RBM10 (ENSOANG00000004552)	ENSOANG00000004550	ENSOANG00000004774	ENSOANG00000047650	IMP4 (ENSOANG00000014598)	ENSOANG00000014597	MON1B (ENSOANG00000039235)	CXXC1 (ENSOANG00000014594)	ENSOANG00000042027	ENSOANG00000051319	ABT1 (ENSOANG00000014590)
Sauria	ANCESTRAL SPECIES	1	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Episquamata	ANCESTRAL SPECIES		ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000155745 #16	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00390000011439
Toxicofera	ANCESTRAL SPECIES		ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000155745 #16	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00950000185286	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00390000011439
Lizard	MODERN SPECIES		RDH14 (ENSACAG00000044389) #12	NT5C1B (ENSACAG00000007066) #13	ENSACAG00000044400	OSR1 (ENSACAG00000007059) #14	ENSACAG00000003251	ENSACAG00000036133	ENSACAG00000014553	TTC32 (ENSACAG00000014548) #15	LAPTM4A (ENSACAG00000014474) #18	ENSACAG00000044127	SDC1 (ENSACAG00000010489) #20	ENSACAG00000041550	PUM2 (ENSACAG00000010491) #21	ENSACAG00000010614	ENSACAG00000042007	RHOB (ENSACAG00000010665) #22	HS1BP3 (ENSACAG00000010669) #23	GDF7 (ENSACAG00000010676) #24	LDAH (ENSACAG00000010680) #25	ENSACAG00000043263	APOB (ENSACAG00000010692) #26	TDRD15 (ENSACAG00000010836)	ENSACAG00000042265	CSMD1 (ENSACAG00000004617)	ENSACAG00000026290	MYOM2 (ENSACAG00000004962)	KBTBD11 (ENSACAG00000042725)	ARHGEF10 (ENSACAG00000005109)	ENSACAG00000036420	ENSACAG00000036763	CLN8 (ENSACAG00000005195)
Elapidae	ANCESTRAL SPECIES		ENSGT00940000156513 #7	ENSGT00550000074816.A.a.c #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000155745 #16	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00950000185286	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00390000011439
Elapidae_a	ANCESTRAL SPECIES	6	ENSGT00390000015159.a.b	ENSGT00940000156513 #7	ENSGT00550000074816.A.a.c #8	ENSGT00940000159266.e #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000155745 #16	ENSGT00940000160181.a #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00940000164901	ENSGT00390000005908 #35
Acanthophiinae	ANCESTRAL SPECIES	8	ENSGT00940000156513 #7	ENSGT00550000074816.A.a.c #8	ENSGT00940000159266.e #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000155745 #16	ENSGT00940000160181.a #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00950000185286	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00390000011439
Mainland tiger snake	MODERN SPECIES	74	VSNL1 (ENSNSUG00000005729) #7	SMC6 (ENSNSUG00000003811) #8	GEN1 (ENSNSUG00000003777) #9	MSGN1 (ENSNSUG00000003773) #10	KCNS3 (ENSNSUG00000003771) #11	WDR35 (ENSNSUG00000003762) #16	RDH14 (ENSNSUG00000003758) #12	NT5C1B (ENSNSUG00000003749) #13	OSR1 (ENSNSUG00000003748) #14	ENSNSUG00000003742	TTC32 (ENSNSUG00000003736) #15	LAPTM4A (ENSNSUG00000003734) #18	SDC1 (ENSNSUG00000003733) #20	PUM2 (ENSNSUG00000000851) #21	ENSNSUG00000000764	RHOB (ENSNSUG00000000761) #22	HS1BP3 (ENSNSUG00000000758) #23	ENSNSUG00000000756	GDF7 (ENSNSUG00000000752) #24	LDAH (ENSNSUG00000000742) #25	APOB (ENSNSUG00000000739) #26	TDRD15 (ENSNSUG00000000737)	KLHL29 (ENSNSUG00000000726) #27	ATAD2B (ENSNSUG00000000683) #28	UBXN2A (ENSNSUG00000000628) #31	ENSNSUG00000000625 #32	WDCP (ENSNSUG00000000620) #33	ENSNSUG00000000616 #33	FKBP1B (ENSNSUG00000000614) #34	SF3B6 (ENSNSUG00000000494) #35
Eastern brown snake	MODERN SPECIES	4	SMC6 (ENSPTXG00000014533) #8	ENSPTXG00000014536	ENSPTXG00000014537 #9	MSGN1 (ENSPTXG00000014539) #10	KCNS3 (ENSPTXG00000014540) #11	WDR35 (ENSPTXG00000014548) #16	RDH14 (ENSPTXG00000014558) #12	NT5C1B (ENSPTXG00000014559) #13	OSR1 (ENSPTXG00000014560) #14	ENSPTXG00000014561	TTC32 (ENSPTXG00000014562) #15	LAPTM4A (ENSPTXG00000014563) #18	SDC1 (ENSPTXG00000014564) #20	PUM2 (ENSPTXG00000014565) #21	ENSPTXG00000014566	RHOB (ENSPTXG00000014567) #22	HS1BP3 (ENSPTXG00000014568) #23	GDF7 (ENSPTXG00000014569) #24	ENSPTXG00000014571	LDAH (ENSPTXG00000014573) #25	APOB (ENSPTXG00000014575) #26	TDRD15 (ENSPTXG00000014579)
Blue-lipped sea krait	MODERN SPECIES	7212																RHOB (ENSLLTG00000013545) #22
Indian cobra	MODERN SPECIES		SMC6 (ENSNNAG00000005310) #8	ENSNNAG00000005468 #9	MSGN1 (ENSNNAG00000005477) #10	KCNS3 (ENSNNAG00000005487) #11	WDR35 (ENSNNAG00000005515) #16	RDH14 (ENSNNAG00000005638) #12	NT5C1B (ENSNNAG00000005647) #13	OSR1 (ENSNNAG00000005665) #14	ENSNNAG00000005690	TTC32 (ENSNNAG00000005721) #15	LAPTM4A (ENSNNAG00000005741) #18	ENSNNAG00000005759 #20	ENSNNAG00000005775	PUM2 (ENSNNAG00000005799) #21	ENSNNAG00000005965	RHOB (ENSNNAG00000006172) #22	HS1BP3 (ENSNNAG00000006192) #23	GDF7 (ENSNNAG00000006210) #24	LDAH (ENSNNAG00000006227) #25	APOB (ENSNNAG00000006325) #26	TDRD15 (ENSNNAG00000007049)	KLHL29 (ENSNNAG00000007070) #27	ATAD2B (ENSNNAG00000007175) #28	UBXN2A (ENSNNAG00000009257) #31	MFSD2B (ENSNNAG00000009283) #32	WDCP (ENSNNAG00000009309) #33	ENSNNAG00000009330 #33	FKBP1B (ENSNNAG00000009376) #34	SF3B6 (ENSNNAG00000009390) #35	RNASEH2B (ENSNNAG00000009409)	ENSNNAG00000009472
Laterata	ANCESTRAL SPECIES	13	ENSGT00940000156513 #7	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000155745 #16	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00390000011439	ENSGT00940000162114
Common wall lizard	MODERN SPECIES	11	VSNL1 (ENSPMRG00000002266) #7	SMC6 (ENSPMRG00000002270) #8	GEN1 (ENSPMRG00000002288) #9	KCNS3 (ENSPMRG00000002300) #11	WDR35 (ENSPMRG00000002308) #16	RDH14 (ENSPMRG00000002345) #12	NT5C1B (ENSPMRG00000002348) #13	OSR1 (ENSPMRG00000002362) #14	ENSPMRG00000002372	TTC32 (ENSPMRG00000002380) #15	LAPTM4A (ENSPMRG00000002388) #18	MATN3 (ENSPMRG00000002396) #17	SDC1 (ENSPMRG00000002406) #20	PUM2 (ENSPMRG00000010266) #21	ENSPMRG00000010287	RHOB (ENSPMRG00000010292) #22	HS1BP3 (ENSPMRG00000010298) #23	GDF7 (ENSPMRG00000010304) #24	LDAH (ENSPMRG00000010307) #25	APOB (ENSPMRG00000010317) #26	TDRD15 (ENSPMRG00000010330)	KLHL29 (ENSPMRG00000010337) #27	ATAD2B (ENSPMRG00000010349) #28	UBXN2A (ENSPMRG00000010363) #31	MFSD2B (ENSPMRG00000010373) #32	WDCP (ENSPMRG00000010386) #33	ENSPMRG00000010389 #33	FKBP1B (ENSPMRG00000010400) #34	SF3B6 (ENSPMRG00000010402) #35	ENSPMRG00000010408	ENSPMRG00000010416
Argentine black and white tegu	MODERN SPECIES	9									OSR1 (ENSSMRG00000004296) #14	ENSSMRG00000004320	TTC32 (ENSSMRG00000004326) #15	LAPTM4A (ENSSMRG00000004329) #18	SDC1 (ENSSMRG00000004375) #20	PUM2 (ENSSMRG00000004387) #21	ENSSMRG00000004410	RHOB (ENSSMRG00000004413) #22	HS1BP3 (ENSSMRG00000004424) #23	GDF7 (ENSSMRG00000004428) #24	LDAH (ENSSMRG00000004454) #25	APOB (ENSSMRG00000004486) #26	TDRD15 (ENSSMRG00000004493)	ENSSMRG00000004548	ENSSMRG00000004589	ENSSMRG00000004598	ENSSMRG00000004607	ENSSMRG00000004685	KLHL29 (ENSSMRG00000004808) #27	ATAD2B (ENSSMRG00000004856) #28	UBXN2A (ENSSMRG00000004874) #31	MFSD2B (ENSSMRG00000004890) #32	WDCP (ENSSMRG00000004924) #33
tuatara	MODERN SPECIES	1178				RDH14 (ENSSPUG00000016914) #12	NT5C1B (ENSSPUG00000016919) #13	OSR1 (ENSSPUG00000016934) #14	TTC32 (ENSSPUG00000016940) #15	ENSSPUG00000016941 #16	ENSSPUG00000016946 #16	ENSSPUG00000016964 #16	MATN3 (ENSSPUG00000016989) #17	LAPTM4A (ENSSPUG00000016996) #18	ENSSPUG00000017003	PUM2 (ENSSPUG00000017012) #21	ENSSPUG00000017031	RHOB (ENSSPUG00000017041) #22
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00940000162520.d	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00950000185286	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000164003	ENSGT00390000013092 #23	ENSGT00950000185286	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35
Chinese turtle	MODERN SPECIES	2214	GEN1 (ENSPSIG00000011938) #9	MSGN1 (ENSPSIG00000001846) #10	ENSPSIG00000011815	KCNS3 (ENSPSIG00000001843) #11	RDH14 (ENSPSIG00000001840) #12	NT5C1B (ENSPSIG00000011766) #13	OSR1 (ENSPSIG00000011751) #14	ENSPSIG00000011721	TTC32 (ENSPSIG00000011713) #15	WDR35 (ENSPSIG00000011703) #16	LAPTM4A (ENSPSIG00000011641) #18	SDC1 (ENSPSIG00000011638) #20	PUM2 (ENSPSIG00000011626) #21	ENSPSIG00000011571	ENSPSIG00000001835	RHOB (ENSPSIG00000011554) #22
Testudinoidea	ANCESTRAL SPECIES	12	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00940000162520.d	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00950000185286	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00960000191248	ENSGT00940000164901
Emydidae	ANCESTRAL SPECIES	8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000153446.b.s #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00950000185286	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00960000191248	ENSGT00940000164901
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	2397	CCAR1 (ENSCPBG00000019635)	STOX1 (ENSCPBG00000019930)	ENSCPBG00000019934	ENSCPBG00000019937	KIFBP (ENSCPBG00000019939)	SRGN (ENSCPBG00000019940)	VPS26A (ENSCPBG00000019942)	ENSCPBG00000019943	TTC32 (ENSCPBG00000019945) #15	WDR35 (ENSCPBG00000019949) #16	ENSCPBG00000019959 #18	SDC1 (ENSCPBG00000019963) #20	PUM2 (ENSCPBG00000019966) #21	ENSCPBG00000019973	ENSCPBG00000019977	RHOB (ENSCPBG00000019979) #22	HS1BP3 (ENSCPBG00000019981) #23	ENSCPBG00000019982	GDF7 (ENSCPBG00000019983) #24	LDAH (ENSCPBG00000019987) #25	APOB (ENSCPBG00000019999) #26	TDRD15 (ENSCPBG00000020009)	KLHL29 (ENSCPBG00000020014) #27	ATAD2B (ENSCPBG00000020023) #28	UBXN2A (ENSCPBG00000020031) #31	MFSD2B (ENSCPBG00000020034) #32	WDCP (ENSCPBG00000020036) #33	ENSCPBG00000020037 #33	FKBP1B (ENSCPBG00000020039) #34	SF3B6 (ENSCPBG00000020042) #35	TP53I3 (ENSCPBG00000020044) #36
painted turtle	MODERN SPECIES	1048	ENSCPBG00000021865	ENSCPBG00000021868	ENSCPBG00000021870	ARAF (ENSCPBG00000021876)	SYN1 (ENSCPBG00000021883)	ENSCPBG00000021892	ENSCPBG00000021894	ENSCPBG00000021895	USP11 (ENSCPBG00000021903)	CDK16 (ENSCPBG00000021984)	ENSCPBG00000021994	ENSCPBG00000000376	RBM10 (ENSCPBG00000000458)	ENSCPBG00000000720	UBA1 (ENSCPBG00000000967)	ENSCPBG00000002152 #22	CCDC115 (ENSCPBG00000002174)	ENSCPBG00000002186	IMP4 (ENSCPBG00000002194)	ENSCPBG00000002208	ENSCPBG00000002228	MON1B (ENSCPBG00000002244)	CXXC1 (ENSCPBG00000002265)	ENSCPBG00000002315	ENSCPBG00000002323	ENSCPBG00000002356
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	15	GEN1 (ENSTMTG00000004477) #9	MSGN1 (ENSTMTG00000004516) #10	KCNS3 (ENSTMTG00000004528) #11	RDH14 (ENSTMTG00000004538) #12	NT5C1B (ENSTMTG00000004549) #13	ENSTMTG00000005639	OSR1 (ENSTMTG00000005645) #14	ENSTMTG00000005663	TTC32 (ENSTMTG00000005737) #15	WDR35 (ENSTMTG00000005747) #16	ENSTMTG00000005813 #18	SDC1 (ENSTMTG00000005833) #20	PUM2 (ENSTMTG00000005851) #21	ENSTMTG00000005951	ENSTMTG00000006051	RHOB (ENSTMTG00000006061) #22	HS1BP3 (ENSTMTG00000006074) #23	GDF7 (ENSTMTG00000006100) #24	ENSTMTG00000006106	LDAH (ENSTMTG00000006126) #25	APOB (ENSTMTG00000006158) #26	TDRD15 (ENSTMTG00000006240)	KLHL29 (ENSTMTG00000006263) #27	ATAD2B (ENSTMTG00000006299) #28	UBXN2A (ENSTMTG00000006362) #31	MFSD2B (ENSTMTG00000006392) #32	WDCP (ENSTMTG00000006464) #33	ENSTMTG00000006472 #33	ENSTMTG00000006487	ENSTMTG00000006497	SF3B6 (ENSTMTG00000006504) #35
Three-toed box turtle	MODERN SPECIES	1677																ENSTMTG00000019980 #22
Testudinidae	ANCESTRAL SPECIES	10	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00940000162520.d	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00950000185286	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00960000191248	ENSGT00940000164901
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	17	VSNL1 (ENSGEVG00005006120) #7	SMC6 (ENSGEVG00005006087) #8	GEN1 (ENSGEVG00005006047) #9	MSGN1 (ENSGEVG00005006020) #10	KCNS3 (ENSGEVG00005006009) #11	RDH14 (ENSGEVG00005005984) #12	NT5C1B (ENSGEVG00005005960) #13	OSR1 (ENSGEVG00005005926) #14	TTC32 (ENSGEVG00005005918) #15	WDR35 (ENSGEVG00005005855) #16	LAPTM4A (ENSGEVG00005005801) #18	ENSGEVG00005005777 #20	PUM2 (ENSGEVG00005005679) #21	ENSGEVG00005005576	ENSGEVG00005005556	RHOB (ENSGEVG00005005543) #22	HS1BP3 (ENSGEVG00005005524) #23	ENSGEVG00005005503	GDF7 (ENSGEVG00005005483) #24	LDAH (ENSGEVG00005005455) #25	APOB (ENSGEVG00005004982) #26	TDRD15 (ENSGEVG00005004857)	KLHL29 (ENSGEVG00005004803) #27	ATAD2B (ENSGEVG00005004743) #28	UBXN2A (ENSGEVG00005004707) #31	MFSD2B (ENSGEVG00005004631) #32	WDCP (ENSGEVG00005004579) #33	ENSGEVG00005004560 #33	FKBP1B (ENSGEVG00005004537) #34	SF3B6 (ENSGEVG00005004526) #35	ENSGEVG00005004497
Goode s thornscrub tortoise	MODERN SPECIES	169				ENSGEVG00005020862	ENSGEVG00005020863	ENSGEVG00005020867	ENSGEVG00005020868	ELK1 (ENSGEVG00005020871)	USP11 (ENSGEVG00005020943)	CDK16 (ENSGEVG00005021017)	ENSGEVG00005021020	ENSGEVG00005021023	NDUFB11 (ENSGEVG00005021026)	ENSGEVG00005021029	UBA1 (ENSGEVG00005021040)	ENSGEVG00005021052 #22	ENSGEVG00005021055	ENSGEVG00005021057	ENSGEVG00005021059	ENSGEVG00005021060	ENSGEVG00005013905	ENSGEVG00005013936	ENSGEVG00005014031	ENSGEVG00005014316	CXXC1 (ENSGEVG00005014332)	ENSGEVG00005014403	ENSGEVG00005014600	ENSGEVG00005014664	ENSGEVG00005014706	ENSGEVG00005014832	ABT1 (ENSGEVG00005014911)
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	346									TTC32 (ENSCABG00000007209) #15	WDR35 (ENSCABG00000007203) #16	LAPTM4A (ENSCABG00000007199) #18	SDC1 (ENSCABG00000007194) #20	ENSCABG00000007190	PUM2 (ENSCABG00000007185) #21	ENSCABG00000007183	RHOB (ENSCABG00000007182) #22
Abingdon island giant tortoise	MODERN SPECIES	2751													ENSCABG00000018029	NDUFB11 (ENSCABG00000018023)	UBA1 (ENSCABG00000016462)	ENSCABG00000016449 #22	ENSCABG00000016446	IMP4 (ENSCABG00000016445)	ENSCABG00000016444	ENSCABG00000016443	MON1B (ENSCABG00000016441)	CXXC1 (ENSCABG00000016437)	ENSCABG00000016418	ENSCABG00000016414	ENSCABG00000016413	ENSCABG00000016405	ENSCABG00000016401	ENSCABG00000016396	GRM6 (ENSCABG00000016254)	ENSCABG00000016250	SUV39H1 (ENSCABG00000016244)
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Aves	ANCESTRAL SPECIES	10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000180923	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000180923	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000180923	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00950000185286	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Anatidae	ANCESTRAL SPECIES		ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000180923	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00950000185286	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Pink-footed goose	MODERN SPECIES	453												SDC1 (ENSABRG00000018944) #20	PUM2 (ENSABRG00000018939) #21	ENSABRG00000018921	ENSABRG00000018907	RHOB (ENSABRG00000018900) #22
Duck	MODERN SPECIES	21	MSGN1 (ENSAPLG00000001852) #10	ENSAPLG00000008127	KCNS3 (ENSAPLG00000001833) #11	RDH14 (ENSAPLG00000008116) #12	NT5C1B (ENSAPLG00000008001) #13	OSR1 (ENSAPLG00000007971) #14	ENSAPLG00000007727	TTC32 (ENSAPLG00000007719) #15	WDR35 (ENSAPLG00000007231) #16	MATN3 (ENSAPLG00000006850) #17	LAPTM4A (ENSAPLG00000006688) #18	ENSAPLG00000019338	SDC1 (ENSAPLG00000010484) #20	PUM2 (ENSAPLG00000010496) #21	ENSAPLG00000011262	RHOB (ENSAPLG00000011404) #22	HS1BP3 (ENSAPLG00000011418) #23	LDAH (ENSAPLG00000011591) #25	APOB (ENSAPLG00000011670) #26	TDRD15 (ENSAPLG00000017833)	KLHL29 (ENSAPLG00000012405) #27	ATAD2B (ENSAPLG00000012458) #28	UBXN2A (ENSAPLG00000012737) #31	ENSAPLG00000022593	MFSD2B (ENSAPLG00000012916) #32	WDCP (ENSAPLG00000013065) #33	ENSAPLG00000013078 #33	FKBP1B (ENSAPLG00000030383) #34	SF3B6 (ENSAPLG00000025645) #35	TP53I3 (ENSAPLG00000013209) #36	PFN4 (ENSAPLG00000013316) #37
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Chicken	MODERN SPECIES	22	GEN1 (ENSGALG00010002376) #9	MSGN1 (ENSGALG00010003849) #10	ZPAX (ENSGALG00010003469)	KCNS3 (ENSGALG00010003438) #11	RDH14 (ENSGALG00010003665) #12	NT5C1B (ENSGALG00010003681) #13	OSR1 (ENSGALG00010002500) #14	ENSGALG00010002513	TTC32 (ENSGALG00010002520) #15	WDR35 (ENSGALG00010002551) #16	MATN3 (ENSGALG00010002579) #17	LAPTM4A (ENSGALG00010007992) #18	SDC1 (ENSGALG00010007999) #20	PUM2 (ENSGALG00010008032) #21	ENSGALG00010008042	RHOB (ENSGALG00010008046) #22	HS1BP3 (ENSGALG00010007956) #23	ENSGALG00010007948	LDAH (ENSGALG00010007963) #25	APOB (ENSGALG00010007977) #26	TDRD15 (ENSGALG00010007981)	KLHL29 (ENSGALG00010009650) #27	ATAD2B (ENSGALG00010009695) #28	UBXN2A (ENSGALG00010009712) #31	MFSD2B (ENSGALG00010009780) #32	WDCP (ENSGALG00010009806) #33	ENSGALG00010009852 #33	FKBP1B (ENSGALG00010008455) #34	SF3B6 (ENSGALG00010008464) #35	FAM228 (ENSGALG00010008501)	TP53I3 (ENSGALG00010011902) #36
Turkey	MODERN SPECIES	11	MSGN1 (ENSMGAG00000016374) #10	ENSMGAG00000014030	KCNS3 (ENSMGAG00000015620) #11	RDH14 (ENSMGAG00000021183) #12	NT5C1B (ENSMGAG00000014031) #13	OSR1 (ENSMGAG00000014033) #14	ENSMGAG00000014037	TTC32 (ENSMGAG00000019538) #15	WDR35 (ENSMGAG00000014034) #16	MATN3 (ENSMGAG00000014036) #17	LAPTM4A (ENSMGAG00000014038) #18	SDC1 (ENSMGAG00000014039) #20	PUM2 (ENSMGAG00000014040) #21	ENSMGAG00000014041	ENSMGAG00000015625	RHOB (ENSMGAG00000022411) #22	HS1BP3 (ENSMGAG00000014042) #23	GDF7 (ENSMGAG00000015643) #24	LDAH (ENSMGAG00000014044) #25	APOB (ENSMGAG00000014045) #26	TDRD15 (ENSMGAG00000014046)	KLHL29 (ENSMGAG00000014049) #27	ATAD2B (ENSMGAG00000014051) #28	UBXN2A (ENSMGAG00000014053) #31	MFSD2B (ENSMGAG00000014052) #32	WDCP (ENSMGAG00000014054) #33	ENSMGAG00000014055 #33	ENSMGAG00000020545	ENSMGAG00000014056	SF3B6 (ENSMGAG00000014057) #35	TP53I3 (ENSMGAG00000014058) #36
Japanese quail	MODERN SPECIES	21	SMC6 (ENSCJPG00005011116) #8	GEN1 (ENSCJPG00005011117) #9	MSGN1 (ENSCJPG00005011118) #10	ENSCJPG00005011119	RDH14 (ENSCJPG00005011121) #12	NT5C1B (ENSCJPG00005011122) #13	OSR1 (ENSCJPG00005011136) #14	ENSCJPG00005011142	TTC32 (ENSCJPG00005011143) #15	WDR35 (ENSCJPG00005011144) #16	MATN3 (ENSCJPG00005011280) #17	LAPTM4A (ENSCJPG00005011281) #18	SDC1 (ENSCJPG00005011283) #20	PUM2 (ENSCJPG00005011284) #21	ENSCJPG00005011289	RHOB (ENSCJPG00005011290) #22	HS1BP3 (ENSCJPG00005011293) #23	GDF7 (ENSCJPG00005011294) #24	LDAH (ENSCJPG00005011295) #25	APOB (ENSCJPG00005011298) #26	TDRD15 (ENSCJPG00005011633)	KLHL29 (ENSCJPG00005011667) #27	ATAD2B (ENSCJPG00005011679) #28	UBXN2A (ENSCJPG00005011700) #31	MFSD2B (ENSCJPG00005011701) #32	WDCP (ENSCJPG00005011702) #33	ENSCJPG00005011703 #33	ENSCJPG00005011704	SF3B6 (ENSCJPG00005011705) #35	TP53I3 (ENSCJPG00005011708) #36	PFN4 (ENSCJPG00005011709) #37
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000180923	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000180923	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Great tit	MODERN SPECIES	22	MSGN1 (ENSPMJG00000012480) #10	KCNS3 (ENSPMJG00000012481) #11	RDH14 (ENSPMJG00000012483) #12	NT5C1B (ENSPMJG00000012484) #13	OSR1 (ENSPMJG00000012488) #14	ENSPMJG00000012490	TTC32 (ENSPMJG00000012491) #15	WDR35 (ENSPMJG00000012492) #16	MATN3 (ENSPMJG00000012493) #17	LAPTM4A (ENSPMJG00000012494) #18	ENSPMJG00000012495	SDC1 (ENSPMJG00000012496) #20	ENSPMJG00000012497	PUM2 (ENSPMJG00000012498) #21	ENSPMJG00000012500	RHOB (ENSPMJG00000012501) #22	HS1BP3 (ENSPMJG00000012505) #23	GDF7 (ENSPMJG00000012507) #24	ENSPMJG00000012508	LDAH (ENSPMJG00000012509) #25	APOB (ENSPMJG00000012512) #26	TDRD15 (ENSPMJG00000012942)	KLHL29 (ENSPMJG00000012950) #27	ATAD2B (ENSPMJG00000012951) #28	UBXN2A (ENSPMJG00000012952) #31	MFSD2B (ENSPMJG00000012953) #32	WDCP (ENSPMJG00000012954) #33	ENSPMJG00000012955 #33	FKBP1B (ENSPMJG00000012957) #34	SF3B6 (ENSPMJG00000012958) #35	TP53I3 (ENSPMJG00000012959) #36
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000180923	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00950000185286	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT01040000244514	ENSGT00940000164901
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000180923	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00950000185286	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT01040000244514	ENSGT00940000164901
Medium ground finch	MODERN SPECIES	21	SMC6 (ENSGFOG00000010514) #8	GEN1 (ENSGFOG00000010501) #9	KCNS3 (ENSGFOG00000010498) #11	RDH14 (ENSGFOG00000010495) #12	NT5C1B (ENSGFOG00000010490) #13	OSR1 (ENSGFOG00000010486) #14	ENSGFOG00000010484	WDR35 (ENSGFOG00000010480) #16	MATN3 (ENSGFOG00000010458) #17	LAPTM4A (ENSGFOG00000010443) #18	ENSGFOG00000010430	SDC1 (ENSGFOG00000010416) #20	ENSGFOG00000010411	PUM2 (ENSGFOG00000010379) #21	ENSGFOG00000010354	RHOB (ENSGFOG00000010348) #22	HS1BP3 (ENSGFOG00000010343) #23	GDF7 (ENSGFOG00000010332) #24	LDAH (ENSGFOG00000010320) #25	APOB (ENSGFOG00000010155) #26	TDRD15 (ENSGFOG00000010131)
Passeroidea	ANCESTRAL SPECIES		ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00940000165918	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000180923	ENSGT00940000161171 #20	ENSGT00900000143081	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00950000185286	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT01040000244514	ENSGT00940000164901
Zebra finch	MODERN SPECIES	23	MSGN1 (ENSTGUG00000013122) #10	ENSTGUG00000013124	KCNS3 (ENSTGUG00000013126) #11	RDH14 (ENSTGUG00000013127) #12	NT5C1B (ENSTGUG00000013129) #13	OSR1 (ENSTGUG00000019377) #14	ENSTGUG00000013130	TTC32 (ENSTGUG00000013135) #15	WDR35 (ENSTGUG00000013136) #16	MATN3 (ENSTGUG00000013143) #17	LAPTM4A (ENSTGUG00000013146) #18	ENSTGUG00000024330	SDC1 (ENSTGUG00000013148) #20	PUM2 (ENSTGUG00000013149) #21	ENSTGUG00000013159	RHOB (ENSTGUG00000019854) #22	HS1BP3 (ENSTGUG00000013163) #23	ENSTGUG00000013164	GDF7 (ENSTGUG00000020444) #24	LDAH (ENSTGUG00000013165) #25	APOB (ENSTGUG00000013166) #26	KLHL29 (ENSTGUG00000013176) #27	ATAD2B (ENSTGUG00000013179) #28	UBXN2A (ENSTGUG00000013185) #31	MFSD2B (ENSTGUG00000013188) #32	WDCP (ENSTGUG00000013189) #33	ENSTGUG00000018392 #33	FKBP1B (ENSTGUG00000013190) #34	SF3B6 (ENSTGUG00000027976) #35	TP53I3 (ENSTGUG00000013192) #36	ENSTGUG00000019873
Common canary	MODERN SPECIES	1	MSGN1 (ENSSCAG00000013255) #10	KCNS3 (ENSSCAG00000013262) #11	RDH14 (ENSSCAG00000013279) #12	NT5C1B (ENSSCAG00000013290) #13	OSR1 (ENSSCAG00000013326) #14	ENSSCAG00000013351	TTC32 (ENSSCAG00000013359) #15	WDR35 (ENSSCAG00000013365) #16	MATN3 (ENSSCAG00000013373) #17	LAPTM4A (ENSSCAG00000013378) #18	ENSSCAG00000013381	SDC1 (ENSSCAG00000013387) #20	ENSSCAG00000013394	PUM2 (ENSSCAG00000013402) #21	ENSSCAG00000013425	RHOB (ENSSCAG00000013430) #22	HS1BP3 (ENSSCAG00000013438) #23	GDF7 (ENSSCAG00000013449) #24	ENSSCAG00000013452	LDAH (ENSSCAG00000013455) #25	APOB (ENSSCAG00000013554) #26	TDRD15 (ENSSCAG00000013836)	KLHL29 (ENSSCAG00000013870) #27	ATAD2B (ENSSCAG00000013891) #28	UBXN2A (ENSSCAG00000013905) #31	MFSD2B (ENSSCAG00000013911) #32	WDCP (ENSSCAG00000013913) #33	ENSSCAG00000013916 #33	ENSSCAG00000013919	ENSSCAG00000013922	SF3B6 (ENSSCAG00000013925) #35
Flycatcher	MODERN SPECIES	21	KCNS3 (ENSFALG00000014929) #11	RDH14 (ENSFALG00000014908) #12	NT5C1B (ENSFALG00000001786) #13	OSR1 (ENSFALG00000028520) #14	ENSFALG00000001780	TTC32 (ENSFALG00000001778) #15	WDR35 (ENSFALG00000001777) #16	MATN3 (ENSFALG00000025667) #17	LAPTM4A (ENSFALG00000001775) #18	ENSFALG00000021365	SDC1 (ENSFALG00000001773) #20	ENSFALG00000026224	ENSFALG00000025154 #21	ENSFALG00000001759 #21	ENSFALG00000001728	RHOB (ENSFALG00000014864) #22	HS1BP3 (ENSFALG00000001718) #23	GDF7 (ENSFALG00000014848) #24	LDAH (ENSFALG00000001713) #25	APOB (ENSFALG00000001698) #26	TDRD15 (ENSFALG00000025891)	ENSFALG00000026691	KLHL29 (ENSFALG00000001686) #27	ENSFALG00000001684 #28	ENSFALG00000028837 #28	UBXN2A (ENSFALG00000001681) #31	MFSD2B (ENSFALG00000001663) #32	WDCP (ENSFALG00000001658) #33	ENSFALG00000001655 #33	ENSFALG00000022856	ENSFALG00000027004
Neognathae_c	ANCESTRAL SPECIES	10	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000180923	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520.d	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.e #33	ENSGT00390000001660.f #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36
Kakapo	MODERN SPECIES	23	VSNL1 (ENSSHBG00005009485) #7	SMC6 (ENSSHBG00005009502) #8	ENSSHBG00005009523 #9	MSGN1 (ENSSHBG00005009540) #10	KCNS3 (ENSSHBG00005009545) #11	RDH14 (ENSSHBG00005009558) #12	NT5C1B (ENSSHBG00005009567) #13	OSR1 (ENSSHBG00005009574) #14	TTC32 (ENSSHBG00005009581) #15	WDR35 (ENSSHBG00005009592) #16	LAPTM4A (ENSSHBG00005009614) #18	ENSSHBG00005009640	SDC1 (ENSSHBG00005009652) #20	PUM2 (ENSSHBG00005009670) #21	ENSSHBG00005009714	RHOB (ENSSHBG00005009806) #22	HS1BP3 (ENSSHBG00005009814) #23	GDF7 (ENSSHBG00005009832) #24	ENSSHBG00005009844	LDAH (ENSSHBG00005009862) #25	APOB (ENSSHBG00005009898) #26	TDRD15 (ENSSHBG00005009933)	KLHL29 (ENSSHBG00005009964) #27	ATAD2B (ENSSHBG00005010123) #28	UBXN2A (ENSSHBG00005010922) #31	MFSD2B (ENSSHBG00005010986) #32	WDCP (ENSSHBG00005011059) #33	ENSSHBG00005011092 #33	FKBP1B (ENSSHBG00005000926) #34	SF3B6 (ENSSHBG00005000929) #35	ENSSHBG00005010089
Golden eagle	MODERN SPECIES	6	MSGN1 (ENSACCG00020011146) #10	KCNS3 (ENSACCG00020011140) #11	RDH14 (ENSACCG00020011134) #12	NT5C1B (ENSACCG00020011126) #13	OSR1 (ENSACCG00020011118) #14	ENSACCG00020011110	WDR35 (ENSACCG00020011082) #16	MATN3 (ENSACCG00020011023) #17	LAPTM4A (ENSACCG00020011001) #18	ENSACCG00020010982	SDC1 (ENSACCG00020010958) #20	ENSACCG00020010949	PUM2 (ENSACCG00020010910) #21	ENSACCG00020010869	ENSACCG00020010855	RHOB (ENSACCG00020010848) #22	HS1BP3 (ENSACCG00020010832) #23	GDF7 (ENSACCG00020010813) #24	LDAH (ENSACCG00020010799) #25	APOB (ENSACCG00020010784) #26	TDRD15 (ENSACCG00020010769)	KLHL29 (ENSACCG00020010747) #27	ATAD2B (ENSACCG00020010718) #28	UBXN2A (ENSACCG00020010703) #31	MFSD2B (ENSACCG00020010686) #32	WDCP (ENSACCG00020010661) #33	ENSACCG00020010653 #33	FKBP1B (ENSACCG00020010647) #34	SF3B6 (ENSACCG00020010637) #35	TP53I3 (ENSACCG00020010628) #36	PFN4 (ENSACCG00020010618) #37
African ostrich	MODERN SPECIES	205						OSR1 (ENSSCUG00000002467) #14	ENSSCUG00000002461	WDR35 (ENSSCUG00000002445) #16	MATN3 (ENSSCUG00000002436) #17	LAPTM4A (ENSSCUG00000002434) #18	ENSSCUG00000002430	ENSSCUG00000002428 #20	PUM2 (ENSSCUG00000002422) #21	ENSSCUG00000002420	ENSSCUG00000002417	RHOB (ENSSCUG00000002415) #22
Australian saltwater crocodile	MODERN SPECIES	38	GEN1 (ENSCPRG00005005337) #9	MSGN1 (ENSCPRG00005005322) #10	KCNS3 (ENSCPRG00005005307) #11	RDH14 (ENSCPRG00005005281) #12	NT5C1B (ENSCPRG00005005265) #13	ENSCPRG00005005234	OSR1 (ENSCPRG00005005214) #14	TTC32 (ENSCPRG00005005187) #15	WDR35 (ENSCPRG00005005160) #16	MATN3 (ENSCPRG00005005148) #17	LAPTM4A (ENSCPRG00005005092) #18	SDC1 (ENSCPRG00005005072) #20	PUM2 (ENSCPRG00005005047) #21	ENSCPRG00005004993	ENSCPRG00005004985	RHOB (ENSCPRG00005004980) #22	HS1BP3 (ENSCPRG00005004967) #23	LDAH (ENSCPRG00005004941) #25	APOB (ENSCPRG00005004760) #26	TDRD15 (ENSCPRG00005004718)	ENSCPRG00005004697	KLHL29 (ENSCPRG00005004677) #27	ATAD2B (ENSCPRG00005004626) #28	UBXN2A (ENSCPRG00005004621) #31	ENSCPRG00005004618 ##32	WDCP (ENSCPRG00005004611) #33	ENSCPRG00005004596 #33	FKBP1B (ENSCPRG00005004594) #34	SF3B6 (ENSCPRG00005004592) #35	TP53I3 (ENSCPRG00005004591) #36	PFN4 (ENSCPRG00005004587) #37
Anura	ANCESTRAL SPECIES	32	ENSGT00550000074816.A.a #8	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000162520	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00390000001660.g #33	ENSGT00390000001660.h #33	ENSGT00940000153311.a.b.b #34	ENSGT00390000005908 #35	ENSGT00940000161217 #36	ENSGT00390000017067 #37
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000007009 #33	ENSLLEG00000007029	ENSLLEG00000007049 #33	FKBP1B (ENSLLEG00000007153) #34	SF3B6 (ENSLLEG00000007404) #35	TP53I3 (ENSLLEG00000007436) #36	PFN4 (ENSLLEG00000007481) #37	ENSLLEG00000007507	ITSN2 (ENSLLEG00000007560)	ENSLLEG00000007792	ENSLLEG00000007903	ENSLLEG00000007917	PUM2 (ENSLLEG00000007959) #21	ENSLLEG00000008459	ENSLLEG00000009110	RHOB (ENSLLEG00000009179) #22	ENSLLEG00000009206	HS1BP3 (ENSLLEG00000009232) #23	GDF7 (ENSLLEG00000009366) #24	LDAH (ENSLLEG00000009412) #25	ENSLLEG00000009604	ENSLLEG00000009703	ENSLLEG00000009726	ENSLLEG00000009746	APOB (ENSLLEG00000009782) #26	TDRD15 (ENSLLEG00000010039)	ENSLLEG00000010116	ENSLLEG00000010137	ENSLLEG00000010166	ENSLLEG00000010209	ENSLLEG00000010265
Frog	MODERN SPECIES	5	msgn1 (ENSXETG00000015571) #10	zpax (ENSXETG00000015572)	kcns3 (ENSXETG00000015573) #11	rdh14 (ENSXETG00000015578) #12	nt5c1a (ENSXETG00000015581) #13	osr1 (ENSXETG00000036783) #14	ttc32 (ENSXETG00000039846) #15	ENSXETG00000046042	ENSXETG00000007995	wdr35 (ENSXETG00000008003) #16	matn3 (ENSXETG00000008005) #17	laptm4a (ENSXETG00000008012) #18	sdc1 (ENSXETG00000049205) #20	pum2 (ENSXETG00000008903) #21	slc7a15 (ENSXETG00000008904)	rhob (ENSXETG00000026772) #22	hs1bp3 (ENSXETG00000008905) #23	gdf7 (ENSXETG00000008906) #24	ldah (ENSXETG00000008907) #25	ENSXETG00000045091	ENSXETG00000045547	ENSXETG00000042933	ENSXETG00000041499 #26	ENSXETG00000045691 #26	tdrd15 (ENSXETG00000007137)	ENSXETG00000026762	klhl29 (ENSXETG00000018212) #27	ENSXETG00000026107	atad2b (ENSXETG00000018211) #28	ubxn2a (ENSXETG00000018210) #31	mfsd2b (ENSXETG00000018209) #32
Actinopterygii	ANCESTRAL SPECIES	135	ENSGT00940000159266 #9	ENSGT00530000063712.a.b #10	ENSGT00940000163503.B	ENSGT00940000155979 #11	ENSGT00940000160181 #12	ENSGT00390000017767.b.a #13	ENSGT00940000158993 #14	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00940000162520	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000161329	ENSGT00940000158824 #27	ENSGT00550000074694.b #28	ENSGT00520000055567.a.b #31	ENSGT00390000005318.b.b.a #32	ENSGT00940000153311.a.b.b #34	ENSGT00390000001660 #33	ENSGT00940000164901
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	11	ENSECRG00000002024	mns1 (ENSECRG00000002013)	QPCT (ENSECRG00000002000)	rdh14b (ENSECRG00000001958) #12	nt5c1ba (ENSECRG00000001925) #13	ENSECRG00000001903	osr1 (ENSECRG00000001887) #14	ttc32 (ENSECRG00000001872) #15	wdr35 (ENSECRG00000001740) #16	matn3b (ENSECRG00000001671) #17	laptm4a (ENSECRG00000001613) #18	SDC1 (ENSECRG00000001593) #20	PUM2 (ENSECRG00000001544) #21	ENSECRG00000001518	RHOB (ENSECRG00000001509) #22	RHOB (ENSECRG00000001498) #22	HS1BP3 (ENSECRG00000001484) #23	GDF7 (ENSECRG00000001462) #24	ldah (ENSECRG00000001438) #25	dusp23b (ENSECRG00000001420)	ENSECRG00000001410	KLHL29 (ENSECRG00000001368) #27	ENSECRG00000001328 #28	ENSECRG00000001290 #28	UBXN2A (ENSECRG00000001256) #31	mfsd2b (ENSECRG00000001235) #32	wdcp (ENSECRG00000001218) #33	ENSECRG00000001200	ENSECRG00000001181	ENSECRG00000001157	zfand3 (ENSECRG00000001135)
Reedfish	MODERN SPECIES	11	stxbp2 (ENSECRG00000002035)	ENSECRG00000002024	mns1 (ENSECRG00000002013)	QPCT (ENSECRG00000002000)	rdh14b (ENSECRG00000001958) #12	nt5c1ba (ENSECRG00000001925) #13	ENSECRG00000001903	osr1 (ENSECRG00000001887) #14	ttc32 (ENSECRG00000001872) #15	wdr35 (ENSECRG00000001740) #16	matn3b (ENSECRG00000001671) #17	laptm4a (ENSECRG00000001613) #18	SDC1 (ENSECRG00000001593) #20	PUM2 (ENSECRG00000001544) #21	ENSECRG00000001518	RHOB (ENSECRG00000001509) #22	RHOB (ENSECRG00000001498) #22	HS1BP3 (ENSECRG00000001484) #23	GDF7 (ENSECRG00000001462) #24	ldah (ENSECRG00000001438) #25	dusp23b (ENSECRG00000001420)	ENSECRG00000001410	KLHL29 (ENSECRG00000001368) #27	ENSECRG00000001328 #28	ENSECRG00000001290 #28	UBXN2A (ENSECRG00000001256) #31	mfsd2b (ENSECRG00000001235) #32	wdcp (ENSECRG00000001218) #33	ENSECRG00000001200	ENSECRG00000001181	ENSECRG00000001157
Neopterygii	ANCESTRAL SPECIES	91	ENSGT00940000159420	ENSGT00390000000709	ENSGT00940000158993 #14	ENSGT00390000017767.b.a #13	ENSGT00940000160181 #12	ENSGT00940000155979 #11	ENSGT00940000163503.B	ENSGT00390000011905 #15	ENSGT00940000155745 #16	ENSGT00940000157581 #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00940000162520	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139 #26	ENSGT00940000162581	ENSGT00940000161329
Spotted gar	MODERN SPECIES	671	qrich1 (ENSLOCG00000014501)	itih3b.1 (ENSLOCG00000014498)	itih3a.1 (ENSLOCG00000014482)	mustn1b (ENSLOCG00000014479)	RFT1 (ENSLOCG00000014475)	prkcda (ENSLOCG00000014468)	pfkfb4a (ENSLOCG00000014458)	mapkapk3 (ENSLOCG00000014454)	ENSLOCG00000014452	ENSLOCG00000014451	chchd4a (ENSLOCG00000014450)	sec61a1 (ENSLOCG00000014447)	hemk1 (ENSLOCG00000014444)	ENSLOCG00000014442	tcta (ENSLOCG00000014440)	ENSLOCG00000014438 #22	ENSLOCG00000014437	ENSLOCG00000014434	borcs6 (ENSLOCG00000014431)	ENSLOCG00000014430	ENSLOCG00000014428	si:dkey-72l14.3 (ENSLOCG00000014421)	wdr46 (ENSLOCG00000014416)	ip6k2a (ENSLOCG00000014413)	prkar2ab (ENSLOCG00000014409)	slc25a20 (ENSLOCG00000014407)	ENSLOCG00000014406	arih2 (ENSLOCG00000014400)	impdh2 (ENSLOCG00000014390)	ndufaf3 (ENSLOCG00000014399)	dalrd3 (ENSLOCG00000014389)
Osteoglossocephalai	ANCESTRAL SPECIES	70	ENSGT00390000017767.b.a #13	ENSGT00940000160181.i #12	ENSGT00940000155979.g #11	ENSGT00940000160181.j #12	ENSGT00940000155979.h #11	ENSGT00940000163503.B	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000155745 #16	ENSGT00940000157581.a #17	ENSGT00940000153446.b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00940000162520.h	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139.c #26	ENSGT00590000083139.d #26	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355	ENSGT00940000160213.a	ENSGT00940000154459.B
Clupeocephala	ANCESTRAL SPECIES	571														ENSGT00940000162520.g	ENSGT00940000162520.h	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23
Euteleosteomorpha	ANCESTRAL SPECIES	49	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000160213.a	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.B.b	ENSGT00940000154164.c.a	ENSGT00940000153498.B.b	ENSGT00390000010827
Protacanthopterygii	ANCESTRAL SPECIES	108	ENSGT00940000179620	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000160213.a	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.B.b	ENSGT00940000154164.c.a	ENSGT00940000153498.B.b	ENSGT00390000010827	ENSGT00390000009366	ENSGT00390000013762.b.a.a.b	ENSGT00940000160140.b #24
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	892														ENSGT00940000153446.b.w #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b.u #22	ENSGT00940000154645.A.e.b	ENSGT00940000155646.l	ENSGT01030000234517.C.f	ENSGT00940000154164.c.b.h
Salmoninae_a	ANCESTRAL SPECIES	104	ENSGT00950000182836.b.a.b.d	ENSGT00940000156989.l	ENSGT00960000186817.b	ENSGT00940000156484.b.e.b.d	ENSGT00390000002089.a.a.a.b	ENSGT00950000182844.b.a.f	ENSGT00940000162013	ENSGT00940000155605.a.a.f	ENSGT00390000011163.e.a	ENSGT00940000165020.a.g	ENSGT00940000157459.a.h	ENSGT00940000163503.B.c.l	ENSGT00940000163503.B.d	ENSGT00940000153446.b.w #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b.u #22	ENSGT00940000154645.A.e.b	ENSGT00940000155646.l	ENSGT01030000234517.C.f	ENSGT00940000154164.c.b.h	ENSGT00940000161952.d	ENSGT00940000156143.a.b.b	ENSGT00940000155610.o.a.b	ENSGT00940000153295.b.j.a	ENSGT00530000063426.b.b.j	ENSGT00940000154798.a.d.b.f	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00510000046470.a.b.e	ENSGT00940000154096.b.b.a.f	ENSGT00940000158432.d	ENSGT00390000018199.a.f
Salmo	ANCESTRAL SPECIES	12	ENSGT00530000064210.c	ENSGT00390000011724.g	ENSGT00950000182836.b.a.b.d	ENSGT00940000156989.l	ENSGT00940000156484.b.e.b.d	ENSGT00390000002089.a.a.a.b	ENSGT00950000182844.b.a.f	ENSGT00940000162013	ENSGT00940000155605.a.a.f	ENSGT00390000011163.e.a.a	ENSGT00940000165020.a.g	ENSGT00940000157459.a.h	ENSGT00940000163503.B.d	ENSGT00940000153446.b.w #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b.u #22	ENSGT00940000154645.A.e.b	ENSGT00940000155646.l	ENSGT01030000234517.C.f	ENSGT00940000154164.c.b.h	ENSGT00940000161952.d	ENSGT00940000156143.a.b.b	ENSGT00940000155610.o.a.b	ENSGT00940000153295.b.j.a	ENSGT00530000063426.b.b.j	ENSGT00940000154798.a.d.b.f	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00510000046470.a.b.e	ENSGT00940000154096.b.b.a.f	ENSGT00390000009415.f	ENSGT00940000158432.d
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000086049	ENSSSAG00000107130	ENSSSAG00000017836	ENSSSAG00000107168	ENSSSAG00000091653	ENSSSAG00000084893	ENSSSAG00000095087	ENSSSAG00000089191	ENSSSAG00000101062	ENSSSAG00000088190	ENSSSAG00000083558	ENSSSAG00000083991	ENSSSAG00000103012	LAPTM4A (ENSSSAG00000101988) #18	ENSSSAG00000046832 #21	RHOB (ENSSSAG00000091726) #22	ENSSSAG00000046676	PDIA6 (ENSSSAG00000046143)	ENSSSAG00000108594	ENSSSAG00000008433	ENSSSAG00000008185	ENSSSAG00000008180	ENSSSAG00000008040	ENSSSAG00000007819	ENSSSAG00000090672	ENSSSAG00000116646	ENSSSAG00000105475	ENSSSAG00000086141	prep (ENSSSAG00000007650)	ENSSSAG00000120858	xkr5a (ENSSSAG00000007629)
River trout	MODERN SPECIES		rd3 (ENSSTUG00000048991)	rhag (ENSSTUG00000048956)	ENSSTUG00000048794	nrbp1 (ENSSTUG00000048730)	churc1 (ENSSTUG00000048725)	ttbk2b (ENSSTUG00000048718)	mideasa (ENSSTUG00000048714)	ENSSTUG00000048602	ENSSTUG00000048520	ENSSTUG00000048194	ENSSTUG00000047810	ENSSTUG00000047742	ENSSTUG00000047685	laptm4a (ENSSTUG00000047662) #18	PUM2 (ENSSTUG00000047362) #21	RHOB (ENSSTUG00000047343) #22	hpcal1 (ENSSTUG00000047337)	pdia6 (ENSSTUG00000047211)	ENSSTUG00000047193	ROCK2 (ENSSTUG00000047053)	SOBP (ENSSTUG00000047032)	ENSSTUG00000047025	SIM1 (ENSSTUG00000046997)	ENSSTUG00000046095	lin28b (ENSSTUG00000046034)	prep (ENSSTUG00000045834)	ENSSTUG00000045809	xkr5a (ENSSTUG00000045797)	tram2 (ENSSTUG00000045717)	ENSSTUG00000045687	mrpl19 (ENSSTUG00000045658)
Oncorhynchus	ANCESTRAL SPECIES	25	ENSGT00940000157993.w	ENSGT01030000234620.a.b.b.b.h	ENSGT00530000064210.c	ENSGT00390000011724.g	ENSGT00950000182836.b.a.b.d	ENSGT00940000156989.l	ENSGT00960000186817.b	ENSGT00940000156484.b.e.b.d	ENSGT00390000002089.a.a.a.b	ENSGT00950000182844.b.a.f	ENSGT00940000165020.a.g	ENSGT00940000157459.a.h	ENSGT00940000163503.B.d.e	ENSGT00940000153446.b.w #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b.u #22	ENSGT00940000154645.A.e.b	ENSGT00940000155646.l	ENSGT01030000234517.C.f	ENSGT00940000154164.c.b.h	ENSGT00940000161952.d	ENSGT00940000156143.a.b.b	ENSGT00940000155610.o.a.b	ENSGT00940000153295.b.j.a	ENSGT00530000063426.b.b.j	ENSGT00940000154798.a.d.b.f	ENSGT00940000153556.A.l.b	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00510000046470.a.b.e	ENSGT00940000154096.b.b.a.f	ENSGT00940000158432.d
Rainbow trout	MODERN SPECIES	25	rhag (ENSOMYG00000000865)	ENSOMYG00000000814	ENSOMYG00000000809	ENSOMYG00000067773	ENSOMYG00000049925	ENSOMYG00000071086	ENSOMYG00000055230	ENSOMYG00000049693	ENSOMYG00000053012	ENSOMYG00000070869	ENSOMYG00000054611	ENSOMYG00000072969	LAPTM4A (ENSOMYG00000058908) #18	ENSOMYG00000052559	ENSOMYG00000000379 #21	RHOB (ENSOMYG00000000043) #22	ENSOMYG00000062632	ENSOMYG00000021814	ENSOMYG00000021806	ENSOMYG00000020930	ENSOMYG00000020007	ENSOMYG00000040932	ENSOMYG00000019884	ENSOMYG00000064401	ENSOMYG00000019809	ENSOMYG00000019769	ENSOMYG00000019653	ENSOMYG00000019544	ENSOMYG00000019419	ENSOMYG00000019359	ENSOMYG00000019353
Oncorhynchus_a	ANCESTRAL SPECIES	17												ENSGT00940000163503.B.c.l	ENSGT00940000163503.B.d.f.a.b.b.a	ENSGT00940000153446.b.w #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b.u #22	ENSGT00940000154645.A.e.b	ENSGT00940000155646.l	ENSGT01030000234517.C.f	ENSGT00940000154164.c.b.h	ENSGT00940000161952.d	ENSGT00940000156143.a.b.b	ENSGT00940000155610.o.a.b	ENSGT00940000153295.b.j.a	ENSGT00530000063426.b.b.j	ENSGT00940000154798.a.d.b.f	ENSGT00940000153556.A.l.b	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00510000046470.a.b.e	ENSGT00940000154096.b.b.a.f	ENSGT00940000158432.d
Coho salmon	MODERN SPECIES	13	ENSOKIG00005044057	ASB2 (ENSOKIG00005044048)	nudt14 (ENSOKIG00005044024)	ENSOKIG00005044018	SEL1L (ENSOKIG00005039750)	AHSA1 (ENSOKIG00005039092)	ENSOKIG00005039081	ENSOKIG00005039066	CDCA4 (ENSOKIG00005039054)	CDC42BPB (ENSOKIG00005027426)	ENSOKIG00005026744	ENSOKIG00005026371	ENSOKIG00005026132	laptm4a (ENSOKIG00005026092) #18	PUM2 (ENSOKIG00005025299) #21	RHOB (ENSOKIG00005025169) #22	HPCAL1 (ENSOKIG00005025132)	PDIA6 (ENSOKIG00005024230)	ENSOKIG00005024158	ROCK2 (ENSOKIG00005023725)	SOBP (ENSOKIG00005023687)	ENSOKIG00005023643	ENSOKIG00005023636	SIM1 (ENSOKIG00005023595)	ENSOKIG00005019325	ENSOKIG00005019011	ENSOKIG00005018990	LIN28B (ENSOKIG00005018979)	PREP (ENSOKIG00005018549)	ENSOKIG00005018516	RUVBL1 (ENSOKIG00005018508)
Chinook salmon	MODERN SPECIES	9	uox (ENSOTSG00005044245)	ENSOTSG00005044230	ttll7 (ENSOTSG00005044008)	ENSOTSG00005044006	ADGRL2 (ENSOTSG00005018192)	vtg3 (ENSOTSG00005018056)	negr1 (ENSOTSG00005018052)	ENSOTSG00005018051	plex9.2 (ENSOTSG00005018048)	MAP1A (ENSOTSG00005018044)	ENSOTSG00005018043	zpax1 (ENSOTSG00005014288)	ENSOTSG00005014279	laptm4a (ENSOTSG00005014278) #18	PUM2 (ENSOTSG00005013477) #21	RHOB (ENSOTSG00005013471) #22	hpcal1 (ENSOTSG00005013470)	pdia6 (ENSOTSG00005010893)	ROCK2 (ENSOTSG00005010728)	SOBP (ENSOTSG00005010727)	ENSOTSG00005010726	ENSOTSG00005010725	SIM1 (ENSOTSG00005010722)	GRIK2 (ENSOTSG00005009970)	lin28b (ENSOTSG00005009958)	prep (ENSOTSG00005009948)	ENSOTSG00005009945	mycn (ENSOTSG00005009944)	ENSOTSG00005009516	erh (ENSOTSG00005009512)	paplnb (ENSOTSG00005009511)
Huchen	MODERN SPECIES	1136													ENSHHUG00000024554	laptm4a (ENSHHUG00000024540) #18	PUM2 (ENSHHUG00000024062) #21	RHOB (ENSHHUG00000024030) #22	ENSHHUG00000024029 #26	hpcal1 (ENSHHUG00000023997)	pdia6 (ENSHHUG00000023987)	ROCK2 (ENSHHUG00000023827)	ENSHHUG00000023819	sobpb (ENSHHUG00000023811)
Salmoninae	ANCESTRAL SPECIES	108	ENSGT00390000002089.a.a.a.a	ENSGT00950000182844.b.a.e.b	ENSGT00390000016613.d	ENSGT00940000155605.a.a.e	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163.f	ENSGT00940000165020.a.h	ENSGT00940000157459.a.g	ENSGT00940000155979.h #11	ENSGT00940000163503.B.c.k	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b.x #18	ENSGT00940000161171 #20	ENSGT00950000182945.b.a.a.b.b.b.v #22	ENSGT00590000083139.d.b.a #26	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b.b #26	ENSGT00940000154645.A.e.a	ENSGT00940000155646.k	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT00950000182995.e.a.a.a.bc	ENSGT00390000007900.f	ENSGT00940000160213.a.d	ENSGT00940000153916.B	ENSGT01030000234517.B.b.l	ENSGT00940000154164.c.a.d	ENSGT00940000153498.B.b.h
Salmoninae_a	ANCESTRAL SPECIES	42	ENSGT00950000182844.b.a.e.b	ENSGT00390000016613.d	ENSGT00940000155605.a.a.e	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163.f	ENSGT00940000165020.a.h	ENSGT00940000157459.a.g	ENSGT00940000155979.h #11	ENSGT00940000163503.B.c.k	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b.x #18	ENSGT00940000161171 #20	ENSGT00990000207468	ENSGT00950000182945.b.a.a.b.b.b.v #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b.b #26	ENSGT00590000083139.d.b.a #26	ENSGT00940000154645.A.e.a	ENSGT00940000155646.k	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT00950000182995.e.a.a.a.bc	ENSGT00390000007900.f	ENSGT00940000160213.a.d	ENSGT00940000153916.B	ENSGT01030000234517.B.b.l	ENSGT00940000154164.c.a.d	ENSGT00940000153498.B.b.h
Oncorhynchus	ANCESTRAL SPECIES	35	ENSGT00950000182844.b.a.e.b	ENSGT00390000016613.d	ENSGT00940000155605.a.a.e	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163.f	ENSGT00940000165020.a.h	ENSGT00940000157459.a.g	ENSGT00940000155979.h #11	ENSGT00940000163503.B.c.k	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b.x #18	ENSGT00940000161171 #20	ENSGT00990000207468	ENSGT00950000182945.b.a.a.b.b.b.v #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b.b #26	ENSGT00590000083139.d.b.a #26	ENSGT00940000154645.A.e.a	ENSGT00940000155646.k	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT00950000182995.e.a.a.a.bc	ENSGT00390000007900.f	ENSGT00940000160213.a.d	ENSGT00940000153916.B	ENSGT01030000234517.B.b.l	ENSGT00940000154164.c.a.d	ENSGT00940000153498.B.b.h
Rainbow trout	MODERN SPECIES	29	rd3 (ENSOMYG00000028497)	rhag (ENSOMYG00000027922)	ENSOMYG00000027819	ENSOMYG00000054728	nrbp1 (ENSOMYG00000027812)	ENSOMYG00000027788	ENSOMYG00000027736	churc1 (ENSOMYG00000027708)	ttbk2b (ENSOMYG00000012408)	mideasa (ENSOMYG00000058735)	ENSOMYG00000012404 #11	zpax1 (ENSOMYG00000012339)	ENSOMYG00000012318 #15	ENSOMYG00000012309	laptm4a (ENSOMYG00000012278) #18	ENSOMYG00000012259 #22	ENSOMYG00000010642 #26	ENSOMYG00000010145 #26	ENSOMYG00000009627 #26	ENSOMYG00000009489	pdia6 (ENSOMYG00000009207)	KCNF1 (ENSOMYG00000008952)	ENSOMYG00000008942	ENSOMYG00000008931	SLC66A3 (ENSOMYG00000008929)	ROCK2 (ENSOMYG00000008329)	sobpb (ENSOMYG00000055556)	ENSOMYG00000007174	ENSOMYG00000007034	mrap2b (ENSOMYG00000006808)	ENSOMYG00000006773
Oncorhynchus_a	ANCESTRAL SPECIES	50	ENSGT00950000182844.b.a.e.b	ENSGT00390000016613.d	ENSGT00940000155605.a.a.e	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163.f	ENSGT00940000165020.a.h	ENSGT00940000157459.a.g	ENSGT00940000155979.h #11	ENSGT00940000163503.B.c.k	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b.x #18	ENSGT00940000161171 #20	ENSGT00990000207468	ENSGT00950000182945.b.a.a.b.b.b.v #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b.b #26	ENSGT00590000083139.d.b.a #26	ENSGT00940000154645.A.e.a	ENSGT00940000155646.k	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT00950000182995.e.a.a.a.bc	ENSGT00390000007900.f	ENSGT00940000160213.a.d	ENSGT00940000153916.B	ENSGT01030000234517.B.b.l	ENSGT00940000154164.c.a.d	ENSGT00940000153498.B.b.h
Chinook salmon	MODERN SPECIES	29	rd3 (ENSOTSG00005024814)	ENSOTSG00005024812	rhag (ENSOTSG00005024078)	ENSOTSG00005024073	nrbp1 (ENSOTSG00005024009)	CAPN3 (ENSOTSG00005024006)	ENSOTSG00005024005	churc1 (ENSOTSG00005024004)	ttbk2b (ENSOTSG00005024003)	kcns3b (ENSOTSG00005008034) #11	zpax1 (ENSOTSG00005007934)	ttc32 (ENSOTSG00005007926) #15	matn3a (ENSOTSG00005007922) #17	laptm4a (ENSOTSG00005007918) #18	ENSOTSG00005007916	RHOB (ENSOTSG00005007915) #22	ENSOTSG00005006476 #26	APOB (ENSOTSG00005006430) #26	APOB (ENSOTSG00005006305) #26	hpcal1 (ENSOTSG00005006304)	pdia6 (ENSOTSG00005006292)	kcnf1a (ENSOTSG00005006291)	ENSOTSG00005006290	ENSOTSG00005006289	SLC66A3 (ENSOTSG00005006287)	ROCK2 (ENSOTSG00005005941)	ENSOTSG00005005932	ENSOTSG00005005931	ENSOTSG00005005928	ENSOTSG00005005927	ENSOTSG00005005925
Coho salmon	MODERN SPECIES	3	slc30a1a (ENSOKIG00005012933)	rd3 (ENSOKIG00005012927)	rhag (ENSOKIG00005012532)	ENSOKIG00005012488	nrbp1 (ENSOKIG00005012412)	CAPN3 (ENSOKIG00005010921)	ENSOKIG00005010777	churc1 (ENSOKIG00005010750)	ttbk2b (ENSOKIG00005010741)	mideasa (ENSOKIG00005010729)	kcns3b (ENSOKIG00005010724) #11	zpax1 (ENSOKIG00005010609)	MATN3 (ENSOKIG00005010560) #17	laptm4a (ENSOKIG00005010543) #18	ENSOKIG00005010537 #20	RHOB (ENSOKIG00005010534) #22	ENSOKIG00005010529	ENSOKIG00005007827 #26	apobb.1 (ENSOKIG00005006499) #26	hpcal1 (ENSOKIG00005006350)	pdia6 (ENSOKIG00005005873)	kcnf1a (ENSOKIG00005005806)	SLC66A3 (ENSOKIG00005005791)	ROCK2 (ENSOKIG00005005634)	sobpb (ENSOKIG00005005571)	ENSOKIG00005005566	ENSOKIG00005005517	ENSOKIG00005005448	ENSOKIG00005005439	mrap2b (ENSOKIG00005005432)	ENSOKIG00005005428
Salmo	ANCESTRAL SPECIES	52	ENSGT00390000002089.a.a.a.a	ENSGT00950000182844.b.a.e.a.a	ENSGT00390000016613.d	ENSGT00940000155605.a.a.e	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163.e.a.b	ENSGT00940000165020.a.h	ENSGT00940000157459.a.g	ENSGT00940000155979.h #11	ENSGT00940000163503.B.c.k	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b.x #18	ENSGT00990000207468	ENSGT00950000182945.b.a.a.b.b.b.v #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b.b #26	ENSGT00590000083139.d.b.a #26	ENSGT00940000154645.A.e.a	ENSGT00940000155646.k	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT00940000153916.B	ENSGT01030000234517.C.e	ENSGT00940000154164.c.b.g	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a.b.a	ENSGT00940000155695.i.a.b.b	ENSGT00940000167806
River trout	MODERN SPECIES	28	ENSSTUG00000046431	nrbp1 (ENSSTUG00000046458)	CAPN3 (ENSSTUG00000046556)	ENSSTUG00000046568	churc1 (ENSSTUG00000046590)	ttbk2b (ENSSTUG00000046603)	mideasa (ENSSTUG00000046617)	kcns3b (ENSSTUG00000046631) #11	zpax1 (ENSSTUG00000046641)	zpax1 (ENSSTUG00000046847)	ttc32 (ENSSTUG00000047091) #15	matn3a (ENSSTUG00000047101) #17	laptm4a (ENSSTUG00000047106) #18	ENSSTUG00000047115	ENSSTUG00000047151 #26	RHOB (ENSSTUG00000047505) #22	apobb.1 (ENSSTUG00000047531) #26	hpcal1 (ENSSTUG00000048063)	pdia6 (ENSSTUG00000016063)	kcnf1a (ENSSTUG00000016502)	ENSSTUG00000016512	ENSSTUG00000016527	SLC66A3 (ENSSTUG00000016528)	ROCK2 (ENSSTUG00000016552)	sobpb (ENSSTUG00000016878)	ENSSTUG00000016885	ENSSTUG00000016922	mrap2b (ENSSTUG00000016983)	SIM1 (ENSSTUG00000016991)	GRIK2 (ENSSTUG00000017251)	ENSSTUG00000020515
Huchen	MODERN SPECIES	882								ENSHHUG00000025223	kcns3b (ENSHHUG00000025215) #11	zpax1 (ENSHHUG00000025124)	ttc32 (ENSHHUG00000025105) #15	matn3a (ENSHHUG00000025092) #17	laptm4a (ENSHHUG00000025079) #18	ENSHHUG00000025074	PUM2 (ENSHHUG00000024735) #21	RHOB (ENSHHUG00000024698) #22	ENSHHUG00000024694 #26	ENSHHUG00000024681 #26	ENSHHUG00000024676 #26	ENSHHUG00000024672 #26	ENSHHUG00000024648 #26	ENSHHUG00000024635 #26	ENSHHUG00000024617 #26	hpcal1 (ENSHHUG00000024588)	pdia6 (ENSHHUG00000024538)	kcnf1a (ENSHHUG00000024534)	ENSHHUG00000024531	ENSHHUG00000024528	SLC66A3 (ENSHHUG00000024522)	ROCK2 (ENSHHUG00000024272)	SOBP (ENSHHUG00000024250)
Acanthomorphata	ANCESTRAL SPECIES	58	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000163656	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00940000153295.b
Cod	MODERN SPECIES	13	paplnb (ENSGMOG00000001137)	ENSGMOG00000001125	smek1 (ENSGMOG00000001099)	mycn (ENSGMOG00000025424)	ENSGMOG00000013706	ENSGMOG00000026789	efhc1 (ENSGMOG00000013731)	ENSGMOG00000013745	ENSGMOG00000013767	ENSGMOG00000007002 #11	ENSGMOG00000006986	ENSGMOG00000031013	zpax1 (ENSGMOG00000006955)	matn3a (ENSGMOG00000006942) #17	laptm4a (ENSGMOG00000006933) #18	RHOB (ENSGMOG00000006898) #22	apobb.1 (ENSGMOG00000027629) #26	ENSGMOG00000025357	pdia6 (ENSGMOG00000006781)	ENSGMOG00000020239	ENSGMOG00000006775	ENSGMOG00000028948	ENSGMOG00000006736	ENSGMOG00000006950 #15	sobpb (ENSGMOG00000028712)	ENSGMOG00000006690	ENSGMOG00000006665	mrap2b (ENSGMOG00000030530)	ENSGMOG00000033996	ENSGMOG00000034681	ENSGMOG00000006637
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000163656	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Tiger tail seahorse	MODERN SPECIES	184														ENSHCOG00000010079	PUM2 (ENSHCOG00000010119) #21	RHOB (ENSHCOG00000010150) #22	ENSHCOG00000010184 #26	apobb.1 (ENSHCOG00000010447) #26	hpcal1 (ENSHCOG00000010484)	pdia6 (ENSHCOG00000010544)	kcnf1a (ENSHCOG00000010566)	ENSHCOG00000000674	ENSHCOG00000000329	ROCK2 (ENSHCOG00000010631)	sobpb (ENSHCOG00000010649)	ENSHCOG00000010661	ENSHCOG00000010678	mrap2b (ENSHCOG00000010714)	ENSHCOG00000010729	SIM1 (ENSHCOG00000010752)	GRIK2 (ENSHCOG00000010774)
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000180017	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000180017	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.b #22
Tetraodon	MODERN SPECIES	5	ENSTNIG00000000380	mideasa (ENSTNIG00000003666)	kcns3b (ENSTNIG00000003665) #11	ENSTNIG00000003664	zpax1 (ENSTNIG00000003663)	matn3a (ENSTNIG00000003118) #17	laptm4a (ENSTNIG00000003117) #18	PUM2 (ENSTNIG00000003116) #21	ENSTNIG00000012313 #26	ENSTNIG00000001656 #26	ENSTNIG00000012312 #26	hpcal1 (ENSTNIG00000012311)	pdia6 (ENSTNIG00000012310)	ENSTNIG00000000657	rock2b (ENSTNIG00000012308)	RHOB (ENSTNIG00000002278) #22	SOBP (ENSTNIG00000012307)	ENSTNIG00000012306	ENSTNIG00000012305	sim1a (ENSTNIG00000012304)	GRIK2 (ENSTNIG00000012303)	lin28b (ENSTNIG00000012302)	prep (ENSTNIG00000012301)	ENSTNIG00000001052	ENSTNIG00000012300	xkr5a (ENSTNIG00000012299)	tram2 (ENSTNIG00000012298)	efhc1 (ENSTNIG00000012297)	ENSTNIG00000012296	mrpl19 (ENSTNIG00000012295)	mycn (ENSTNIG00000012294)
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000180017	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Ballan wrasse	MODERN SPECIES	164	ENSLBEG00000021285	ENSLBEG00000021248	nrbp1 (ENSLBEG00000021166)	CAPN3 (ENSLBEG00000021037)	ENSLBEG00000020931	churc1 (ENSLBEG00000020891)	ttbk2b (ENSLBEG00000020849)	mideasa (ENSLBEG00000020814)	kcns3b (ENSLBEG00000020801) #11	ENSLBEG00000020765	zpax1 (ENSLBEG00000020696)	ttc32 (ENSLBEG00000020671) #15	matn3a (ENSLBEG00000020648) #17	laptm4a (ENSLBEG00000020617) #18	PUM2 (ENSLBEG00000020488) #21	RHOB (ENSLBEG00000020385) #22	ENSLBEG00000020343 #26	ENSLBEG00000020272 #26	ENSLBEG00000020245 #26	ENSLBEG00000020170 #26	hpcal1 (ENSLBEG00000020130)	pdia6 (ENSLBEG00000020065)	kcnf1a (ENSLBEG00000020033)	ENSLBEG00000020014	ENSLBEG00000019995	rock2b (ENSLBEG00000019702)	sobpb (ENSLBEG00000019631)	ENSLBEG00000019609	ENSLBEG00000019571	mrap2b (ENSLBEG00000019499)	ripply2 (ENSLBEG00000019472)
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000180017	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Perciformes	ANCESTRAL SPECIES	14	ENSGT00940000156439.c	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Cottioidei	ANCESTRAL SPECIES	25	ENSGT00950000182844.b.a	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Stickleback	MODERN SPECIES	18	ENSGACG00000009824	churc1 (ENSGACG00000009818)	ENSGACG00000009817	ttbk2b (ENSGACG00000009811)	ENSGACG00000009809	ENSGACG00000009798	kcns3b (ENSGACG00000009796) #11	ENSGACG00000009788	zpax1 (ENSGACG00000009775)	zpax1 (ENSGACG00000009750)	zpax1 (ENSGACG00000009723)	ttc32 (ENSGACG00000009719) #15	matn3a (ENSGACG00000009713) #17	laptm4a (ENSGACG00000009681) #18	PUM2 (ENSGACG00000009670) #21	RHOB (ENSGACG00000009667) #22	ENSGACG00000009664 #26	ENSGACG00000009649 #26	apobb.1 (ENSGACG00000009637) #26	hpcal1 (ENSGACG00000009616)	pdia6 (ENSGACG00000009586)	kcnf1a (ENSGACG00000009584)	ENSGACG00000009580	rock2b (ENSGACG00000009555)	ENSGACG00000009552	ENSGACG00000009547	ENSGACG00000009546	ENSGACG00000009538	ENSGACG00000009504	mrap2b (ENSGACG00000009500)	SIM1 (ENSGACG00000009479)
Lumpfish	MODERN SPECIES	16	bpnt1 (ENSCLMG00005012167)	ppp1cb (ENSCLMG00005012002)	ENSCLMG00005012000	YPEL5 (ENSCLMG00005011998)	slc35a1 (ENSCLMG00005011997)	rars2 (ENSCLMG00005011966)	ENSCLMG00005011964	zpax1 (ENSCLMG00005011961)	ENSCLMG00005011959	zpax1 (ENSCLMG00005021483)	zpax1 (ENSCLMG00005021482)	ttc32 (ENSCLMG00005021479) #15	matn3a (ENSCLMG00005021478) #17	laptm4a (ENSCLMG00005021476) #18	PUM2 (ENSCLMG00005020696) #21	RHOB (ENSCLMG00005020665) #22	ENSCLMG00005020663	ENSCLMG00005020661 #26	apobb.1 (ENSCLMG00005020657) #26	hpcal1 (ENSCLMG00005020655)	pdia6 (ENSCLMG00005020652)	kcnf1a (ENSCLMG00005020650)	ENSCLMG00005020647	rock2b (ENSCLMG00005017154)	sobpb (ENSCLMG00005017057)	ENSCLMG00005017056	ENSCLMG00005017055	mrap2b (ENSCLMG00005017054)	ripply2 (ENSCLMG00005017052)	SIM1 (ENSCLMG00005017051)	ENSCLMG00005017045
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00940000156439.c	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Pike perch	MODERN SPECIES	4	ENSSLUG00000001055	nrbp1 (ENSSLUG00000001067)	CAPN3 (ENSSLUG00000001116)	ENSSLUG00000001177	churc1 (ENSSLUG00000001185)	ttbk2b (ENSSLUG00000001188)	mideasa (ENSSLUG00000001198)	kcns3b (ENSSLUG00000001206) #11	ENSSLUG00000001231	zpax1 (ENSSLUG00000001319)	ttc32 (ENSSLUG00000001350) #15	matn3a (ENSSLUG00000001355) #17	laptm4a (ENSSLUG00000001359) #18	ENSSLUG00000001361	ENSSLUG00000001428 #26	RHOB (ENSSLUG00000002010) #22	ENSSLUG00000002015 #26	APOB (ENSSLUG00000002042) #26	hpcal1 (ENSSLUG00000002100)	pdia6 (ENSSLUG00000002134)	kcnf1a (ENSSLUG00000002330)	ENSSLUG00000002335	rock2b (ENSSLUG00000002552)	sobpb (ENSSLUG00000005661)	ENSSLUG00000005676	ENSSLUG00000005725	mrap2b (ENSSLUG00000005770)	ripply2 (ENSSLUG00000005777)	SIM1 (ENSSLUG00000005789)	ENSSLUG00000005843	ENSSLUG00000005870
Channel bull blenny	MODERN SPECIES	16	nrbp1 (ENSCGOG00000023821)	CAPN3 (ENSCGOG00000023894)	churc1 (ENSCGOG00000024024)	ttbk2b (ENSCGOG00000024034)	mideasa (ENSCGOG00000024036)	kcns3b (ENSCGOG00000024042) #11	ENSCGOG00000024063	ENSCGOG00000024083	zpax1 (ENSCGOG00000024097)	ENSCGOG00000024132	ENSCGOG00000024146	ttc32 (ENSCGOG00000024148) #15	matn3a (ENSCGOG00000024149) #17	laptm4a (ENSCGOG00000024151) #18	PUM2 (ENSCGOG00000024225) #21	RHOB (ENSCGOG00000024408) #22	ENSCGOG00000024409 #26	ENSCGOG00000024410 #26	ENSCGOG00000024414 #26	hpcal1 (ENSCGOG00000024416)	pdia6 (ENSCGOG00000024424)	kcnf1a (ENSCGOG00000024448)	ENSCGOG00000024449	ENSCGOG00000024450	rock2b (ENSCGOG00000024519)	sobpb (ENSCGOG00000024650)	ENSCGOG00000024651	ENSCGOG00000024658	mrap2b (ENSCGOG00000024660)	ripply2 (ENSCGOG00000024661)	SIM1 (ENSCGOG00000024662)
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000180017	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Gilthead seabream	MODERN SPECIES	14	CAPN3 (ENSSAUG00010012311)	ENSSAUG00010012927	churc1 (ENSSAUG00010012932)	ttbk2b (ENSSAUG00010012935)	mideasa (ENSSAUG00010012940)	kcns3b (ENSSAUG00010012951) #11	ENSSAUG00010012984	ENSSAUG00010013539	zpax1 (ENSSAUG00010013544)	ttc32 (ENSSAUG00010013569) #15	matn3a (ENSSAUG00010013570) #17	ENSSAUG00010013571	laptm4a (ENSSAUG00010013572) #18	ENSSAUG00010013574	ENSSAUG00010013592 #26	RHOB (ENSSAUG00010014390) #22	ENSSAUG00010014401 #26	ENSSAUG00010014476 #26	hpcal1 (ENSSAUG00010014485)	pdia6 (ENSSAUG00010014519)	kcnf1a (ENSSAUG00010015354)	ENSSAUG00010015355	ENSSAUG00010015356	rock2b (ENSSAUG00010015365)	sobpb (ENSSAUG00010015462)	ENSSAUG00010015463	ENSSAUG00010015465	ENSSAUG00010015478	mrap2b (ENSSAUG00010015482)	ripply2 (ENSSAUG00010015483)	ENSSAUG00010015484
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000180017	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.b	ENSGT00940000165355.a	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Large yellow croaker	MODERN SPECIES	482	sprtn (ENSLCRG00005002525)	exoc8 (ENSLCRG00005002640)	CAPN3 (ENSLCRG00005002667)	ENSLCRG00005002948	churc1 (ENSLCRG00005002955)	ttbk2b (ENSLCRG00005002957)	mideasa (ENSLCRG00005002959)	kcns3b (ENSLCRG00005002963) #11	ENSLCRG00005002979	zpax1 (ENSLCRG00005003714)	ttc32 (ENSLCRG00005003785) #15	matn3a (ENSLCRG00005003786) #17	laptm4a (ENSLCRG00005003788) #18	ENSLCRG00005003789	PUM2 (ENSLCRG00005003798) #21	RHOB (ENSLCRG00005003900) #22	ENSLCRG00005003908 #26	ENSLCRG00005004107 #26	ENSLCRG00005004111 #26	hpcal1 (ENSLCRG00005004112)	pdia6 (ENSLCRG00005004117)	kcnf1a (ENSLCRG00005004468)	ENSLCRG00005004470	rock2b (ENSLCRG00005004489)	sobpb (ENSLCRG00005004974)	ENSLCRG00005004975	ENSLCRG00005004977	ENSLCRG00005004980	mrap2b (ENSLCRG00005004981)	ripply2 (ENSLCRG00005004982)	SIM1 (ENSLCRG00005004983)
European seabass	MODERN SPECIES	7	nrbp1 (ENSDLAG00005011381)	ENSDLAG00005011625	ENSDLAG00005012851	churc1 (ENSDLAG00005032581)	ttbk2b (ENSDLAG00005012888)	mideasa (ENSDLAG00005013043)	ENSDLAG00005029362 #11	ENSDLAG00005013056	zpax1 (ENSDLAG00005013242)	ttc32 (ENSDLAG00005013442) #15	matn3a (ENSDLAG00005013450) #17	laptm4a (ENSDLAG00005027270) #18	ENSDLAG00005013509	ENSDLAG00005013549 #26	ENSDLAG00005030713 #26	RHOB (ENSDLAG00005027945) #22	ENSDLAG00005014734 #26	ENSDLAG00005014799 #26	ENSDLAG00005029029	pdia6 (ENSDLAG00005015284)	ENSDLAG00005029251	ENSDLAG00005016406	ENSDLAG00005032242	ENSDLAG00005016433	sobpb (ENSDLAG00005016681)	ENSDLAG00005016702	ENSDLAG00005016734	mrap2b (ENSDLAG00005031700)	ripply2 (ENSDLAG00005016820)	ENSDLAG00005016828	ENSDLAG00005005046
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000180017	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Carangaria	ANCESTRAL SPECIES	18	ENSGT00940000156439.c	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Pleuronectoidei	ANCESTRAL SPECIES	11	ENSGT00940000156439.c	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000163656	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Tongue sole	MODERN SPECIES	17	ENSCSEG00000020883	ENSCSEG00000020884	nrbp1 (ENSCSEG00000020885)	CAPN3 (ENSCSEG00000020886)	ENSCSEG00000020887	churc1 (ENSCSEG00000020888)	ttbk2b (ENSCSEG00000020889)	mideasa (ENSCSEG00000020890)	kcns3b (ENSCSEG00000020891) #11	ENSCSEG00000020892	zpax1 (ENSCSEG00000020893)	ttc32 (ENSCSEG00000020895) #15	matn3a (ENSCSEG00000020896) #17	laptm4a (ENSCSEG00000020897) #18	PUM2 (ENSCSEG00000020899) #21	RHOB (ENSCSEG00000020938) #22	ENSCSEG00000020940 #26	apobb.1 (ENSCSEG00000020944) #26	hpcal1 (ENSCSEG00000020952)	pdia6 (ENSCSEG00000020956)	kcnf1a (ENSCSEG00000020961)	ENSCSEG00000020963	ENSCSEG00000020965	rock2b (ENSCSEG00000020966)	sobpb (ENSCSEG00000020972)	ENSCSEG00000020974	ENSCSEG00000020976	mrap2b (ENSCSEG00000020979)	ripply2 (ENSCSEG00000020982)	SIM1 (ENSCSEG00000020985)	ENSCSEG00000021032
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT00940000162013	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Barramundi perch	MODERN SPECIES	335	ENSLCAG00010020994	ENSLCAG00010021001	nrbp1 (ENSLCAG00010021026)	CAPN3 (ENSLCAG00010021080)	ENSLCAG00010021098	churc1 (ENSLCAG00010021110)	ttbk2b (ENSLCAG00010021115)	mideasa (ENSLCAG00010021121)	kcns3b (ENSLCAG00010021132) #11	ENSLCAG00010021144	zpax1 (ENSLCAG00010021178)	ttc32 (ENSLCAG00010021231) #15	ENSLCAG00010021232	laptm4a (ENSLCAG00010021233) #18	PUM2 (ENSLCAG00010021253) #21	RHOB (ENSLCAG00010021289) #22	ENSLCAG00010021297 #26	apobb.1 (ENSLCAG00010021305) #26	hpcal1 (ENSLCAG00010021314)	pdia6 (ENSLCAG00010021356)	kcnf1a (ENSLCAG00010021456)	ENSLCAG00010021457	ENSLCAG00010021459	ROCK2 (ENSLCAG00010021503)
Seriola	ANCESTRAL SPECIES	4	ENSGT00940000162013	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	451																RHOB (ENSSLDG00000011815) #22
Yellowtail amberjack	MODERN SPECIES	2936	ENSSLDG00000000247	ENSSLDG00000000313	nrbp1 (ENSSLDG00000000428)	CAPN3 (ENSSLDG00000000506)	ENSSLDG00000000524	churc1 (ENSSLDG00000000533)	ttbk2b (ENSSLDG00000000565)	mideasa (ENSSLDG00000000670)	kcns3b (ENSSLDG00000000679) #11	ENSSLDG00000000690	zpax1 (ENSSLDG00000000764)	ttc32 (ENSSLDG00000000891) #15	matn3a (ENSSLDG00000000904) #17	laptm4a (ENSSLDG00000000944) #18	PUM2 (ENSSLDG00000000981) #21	RHOB (ENSSLDG00000001066) #22	ENSSLDG00000001135	ENSSLDG00000001156 #26	ENSSLDG00000001194 #26	ENSSLDG00000001277 #26	ENSSLDG00000001285 #26	hpcal1 (ENSSLDG00000001335)	pdia6 (ENSSLDG00000001363)	kcnf1a (ENSSLDG00000001418)	ENSSLDG00000001439	ENSSLDG00000001449	rock2b (ENSSLDG00000001463)	sobpb (ENSSLDG00000001609)	ENSSLDG00000001617	ENSSLDG00000001627	mrap2b (ENSSLDG00000001700)
Greater amberjack	MODERN SPECIES	10	CRISP3 (ENSSDUG00000002995)	ENSSDUG00000002975	nrbp1 (ENSSDUG00000002869)	ENSSDUG00000002257	churc1 (ENSSDUG00000002192)	ttbk2b (ENSSDUG00000002162)	mideasa (ENSSDUG00000002088)	KCNS3 (ENSSDUG00000002073) #11	kcns3b (ENSSDUG00000002071) #11	ENSSDUG00000001994	zpax1 (ENSSDUG00000001910)	ttc32 (ENSSDUG00000001884) #15	matn3a (ENSSDUG00000001868) #17	laptm4a (ENSSDUG00000001839) #18	PUM2 (ENSSDUG00000001800) #21	RHOB (ENSSDUG00000001734) #22	ENSSDUG00000001632 #26	ENSSDUG00000001592 #26	APOB (ENSSDUG00000001127) #26	hpcal1 (ENSSDUG00000001070)	pdia6 (ENSSDUG00000001028)	kcnf1a (ENSSDUG00000001015)	ENSSDUG00000001004	rock2b (ENSSDUG00000000886)	sobpb (ENSSDUG00000000854)	ENSSDUG00000000843	ENSSDUG00000000828	mrap2b (ENSSDUG00000000804)	ripply2 (ENSSDUG00000000798)	SIM1 (ENSSDUG00000000756)	ENSSDUG00000000729
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000180017	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00940000155610.o.a	ENSGT00940000153295.b
Zig-zag eel	MODERN SPECIES	16	ENSMAMG00000005415	ENSMAMG00000005457	nrbp1 (ENSMAMG00000005667)	ENSMAMG00000005712	ENSMAMG00000025637	churc1 (ENSMAMG00000028489)	ttbk2b (ENSMAMG00000005848)	mideasa (ENSMAMG00000005880)	ENSMAMG00000005896 #11	ENSMAMG00000005910	ttc32 (ENSMAMG00000006019) #15	MATN3 (ENSMAMG00000006026) #17	laptm4a (ENSMAMG00000006046) #18	ENSMAMG00000006076	PUM2 (ENSMAMG00000006121) #21	RHOB (ENSMAMG00000024430) #22	apobb.1 (ENSMAMG00000006201) #26	ENSMAMG00000006214	pdia6 (ENSMAMG00000006245)	ENSMAMG00000006291	ENSMAMG00000006304	ENSMAMG00000026793	ENSMAMG00000006313	sobpb (ENSMAMG00000006443)	ENSMAMG00000006461	ENSMAMG00000006468	mrap2b (ENSMAMG00000006531)	ripply2 (ENSMAMG00000006564)	ENSMAMG00000006584	ENSMAMG00000006597	ENSMAMG00000006635
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00950000182844.b.a	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00940000155610.o.a	ENSGT00940000153295.b
Climbing perch	MODERN SPECIES	15	rd3 (ENSATEG00000025390)	rhag (ENSATEG00000016362)	ENSATEG00000016187	nrbp1 (ENSATEG00000016104)	ENSATEG00000016039	ENSATEG00000016010	churc1 (ENSATEG00000027312)	ttbk2b (ENSATEG00000015975)	mideasa (ENSATEG00000015945)	ENSATEG00000015927 #11	ENSATEG00000015290	zpax1 (ENSATEG00000015158)	ttc32 (ENSATEG00000015145) #15	matn3a (ENSATEG00000015129) #17	laptm4a (ENSATEG00000029888) #18	RHOB (ENSATEG00000014956) #22	ENSATEG00000015030 #26	apobb.1 (ENSATEG00000014613) #26	ENSATEG00000026808	pdia6 (ENSATEG00000014568)	ENSATEG00000014562	ENSATEG00000014555	ENSATEG00000014546	ENSATEG00000014458	sobpb (ENSATEG00000014428)	ENSATEG00000014409	ENSATEG00000014355	mrap2b (ENSATEG00000014317)	ripply2 (ENSATEG00000014300)	ENSATEG00000014254	ENSATEG00000014211
Siamese fighting fish	MODERN SPECIES	13	rd3 (ENSBSLG00000020927)	rhag (ENSBSLG00000019895)	ENSBSLG00000019779	nrbp1 (ENSBSLG00000019447)	ENSBSLG00000018922	churc1 (ENSBSLG00000018897)	ttbk2b (ENSBSLG00000018825)	mideasa (ENSBSLG00000018751)	kcns3b (ENSBSLG00000018484) #11	ENSBSLG00000018377	zpax1 (ENSBSLG00000018280)	ttc32 (ENSBSLG00000018271) #15	matn3a (ENSBSLG00000018212) #17	laptm4a (ENSBSLG00000018165) #18	PUM2 (ENSBSLG00000017389) #21	RHOB (ENSBSLG00000017353) #22	apobb.1 (ENSBSLG00000016737) #26	hpcal1 (ENSBSLG00000016572)	pdia6 (ENSBSLG00000015243)	kcnf1a (ENSBSLG00000015151)	ENSBSLG00000014981	rock2b (ENSBSLG00000013667)	sobpb (ENSBSLG00000013586)	ENSBSLG00000013531	ENSBSLG00000013374	mrap2b (ENSBSLG00000013345)	ripply2 (ENSBSLG00000013340)	sim1a (ENSBSLG00000013187)	GRIK2 (ENSBSLG00000010881)	lin28b (ENSBSLG00000010592)	prep (ENSBSLG00000010035)
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00940000155605.a.a	ENSGT00940000179293	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00940000155605.a.a	ENSGT00940000179293	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Pomacentridae	ANCESTRAL SPECIES	34	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Pomacentridae_A	ANCESTRAL SPECIES	26	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Amphiprion	ANCESTRAL SPECIES	55	ENSGT00940000162013	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Clown anemonefish	MODERN SPECIES	665															PUM2 (ENSAOCG00000016619) #21	RHOB (ENSAOCG00000001146) #22	ENSAOCG00000016531 #26	ENSAOCG00000016471 #26	ENSAOCG00000016287	ENSAOCG00000016132 #26	hpcal1 (ENSAOCG00000015838)	pdia6 (ENSAOCG00000015820)	kcnf1a (ENSAOCG00000001093)	ENSAOCG00000002172	rock2b (ENSAOCG00000015667)	sobpb (ENSAOCG00000015520)	ENSAOCG00000015481	ENSAOCG00000015451	mrap2b (ENSAOCG00000015372)	SIM1 (ENSAOCG00000015345)	ENSAOCG00000015304
Orange clownfish	MODERN SPECIES	2	ENSAPEG00000018654	ENSAPEG00000018667	nrbp1 (ENSAPEG00000018677)	CAPN3 (ENSAPEG00000018744)	ENSAPEG00000018775	churc1 (ENSAPEG00000018786)	ttbk2b (ENSAPEG00000018809)	mideasa (ENSAPEG00000018844)	kcns3b (ENSAPEG00000018857) #11	ENSAPEG00000018959	zpax1 (ENSAPEG00000019737)	ttc32 (ENSAPEG00000019796) #15	matn3a (ENSAPEG00000019827) #17	laptm4a (ENSAPEG00000019887) #18	PUM2 (ENSAPEG00000019924) #21	RHOB (ENSAPEG00000020074) #22	ENSAPEG00000020126 #26	ENSAPEG00000020230 #26	ENSAPEG00000020501	ENSAPEG00000020519 #26	hpcal1 (ENSAPEG00000020798)	pdia6 (ENSAPEG00000020815)	kcnf1a (ENSAPEG00000020863)	ENSAPEG00000020875	ENSAPEG00000020886	rock2b (ENSAPEG00000020932)	sobpb (ENSAPEG00000021162)	ENSAPEG00000021188	ENSAPEG00000021210	mrap2b (ENSAPEG00000021269)	ENSAPEG00000021288
Spiny chromis	MODERN SPECIES	773	ENSAPOG00000015036	nrbp1 (ENSAPOG00000015117)	CAPN3 (ENSAPOG00000015226)	ENSAPOG00000015243	churc1 (ENSAPOG00000000427)	ttbk2b (ENSAPOG00000015312)	mideasa (ENSAPOG00000015326)	kcns3b (ENSAPOG00000015337) #11	ENSAPOG00000015482	zpax1 (ENSAPOG00000015594)	ttc32 (ENSAPOG00000015598) #15	matn3a (ENSAPOG00000015628) #17	laptm4a (ENSAPOG00000015668) #18	PUM2 (ENSAPOG00000015756) #21	ENSAPOG00000015772	RHOB (ENSAPOG00000015781) #22
Bicolor damselfish	MODERN SPECIES	827											zpax1 (ENSSPAG00000023001)	ttc32 (ENSSPAG00000022998) #15	matn3a (ENSSPAG00000022991) #17	laptm4a (ENSSPAG00000022974) #18	PUM2 (ENSSPAG00000022948) #21	RHOB (ENSSPAG00000022935) #22	ENSSPAG00000022929 #26	ENSSPAG00000022911 #26	ENSSPAG00000022904 #26	ENSSPAG00000022868	ENSSPAG00000022847 #26	hpcal1 (ENSSPAG00000022838)	pdia6 (ENSSPAG00000022820)	kcnf1a (ENSSPAG00000022813)	ENSSPAG00000022806	rock2b (ENSSPAG00000022785)	sobpb (ENSSPAG00000022780)	ENSSPAG00000022779	ENSSPAG00000022761	mrap2b (ENSSPAG00000022747)	ripply2 (ENSSPAG00000022743)
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00940000155605.a.a	ENSGT00940000179293	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT00940000178564	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000155605.a.a	ENSGT00940000179293	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT00940000178564	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000155605.a.a	ENSGT00940000179293	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT00940000178564	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000179293	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT00940000178564	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000179293	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT00940000178564	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
P. nyererei	MODERN SPECIES	336	CRISP2 (ENSPNYG00000023117)	ENSPNYG00000023106	nrbp1 (ENSPNYG00000023078)	CAPN3 (ENSPNYG00000023051)	ENSPNYG00000023040	churc1 (ENSPNYG00000023035)	ttbk2b (ENSPNYG00000023027)	mideasa (ENSPNYG00000023021)	kcns3b (ENSPNYG00000023014) #11	ENSPNYG00000023008	ENSPNYG00000022992	ttc32 (ENSPNYG00000022984) #15	matn3a (ENSPNYG00000022980) #17	laptm4a (ENSPNYG00000022972) #18	PUM2 (ENSPNYG00000022901) #21	RHOB (ENSPNYG00000022862) #22	ENSPNYG00000022858 #26	ENSPNYG00000022843 #26	apobb.1 (ENSPNYG00000022826) #26	hpcal1 (ENSPNYG00000022816)	pdia6 (ENSPNYG00000022801)	kcnf1a (ENSPNYG00000022793)	ENSPNYG00000022789	ENSPNYG00000022785	ENSPNYG00000022782	rock2b (ENSPNYG00000022729)	sobpb (ENSPNYG00000022706)	ENSPNYG00000022697	ENSPNYG00000022681	mrap2b (ENSPNYG00000022668)	ripply2 (ENSPNYG00000022659)
Haplochromini_B	ANCESTRAL SPECIES	34	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000179293	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A
Zebra mbuna	MODERN SPECIES	1097	DUSP10 (ENSMZEG00005001255)	hlx1 (ENSMZEG00005001240)	slc35f6 (ENSMZEG00005001233)	kcnk3a (ENSMZEG00005001225)	enpp1 (ENSMZEG00005001195)	ENSMZEG00005001182	ezrb (ENSMZEG00005001137)	rsph3 (ENSMZEG00005001059)	tagapb (ENSMZEG00005001046)	opn8c (ENSMZEG00005001026)	PPP2R5A (ENSMZEG00005000981)	dtl (ENSMZEG00005000964)	ENSMZEG00005000955	ENSMZEG00005000930	PUM2 (ENSMZEG00005000791) #21	RHOB (ENSMZEG00005000393) #22	ENSMZEG00005000371 #26	ENSMZEG00005000230 #26	apobb.1 (ENSMZEG00005000214) #26	hpcal1 (ENSMZEG00005000173)	pdia6 (ENSMZEG00005018295)	kcnf1a (ENSMZEG00005018289)	ENSMZEG00005018286	ENSMZEG00005018282	rock2b (ENSMZEG00005018234)	sobpb (ENSMZEG00005018223)	ENSMZEG00005018219	ENSMZEG00005018211	mrap2b (ENSMZEG00005018206)	ripply2 (ENSMZEG00005018204)	SIM1 (ENSMZEG00005018193)
Eastern happy	MODERN SPECIES	6	CRISP2 (ENSACLG00000023325)	ENSACLG00000023310	nrbp1 (ENSACLG00000023217)	CAPN3 (ENSACLG00000023081)	ENSACLG00000023032	churc1 (ENSACLG00000023022)	ttbk2b (ENSACLG00000022993)	mideasa (ENSACLG00000022937)	kcns3b (ENSACLG00000022930) #11	ENSACLG00000022895	zpax1 (ENSACLG00000022859)	ttc32 (ENSACLG00000022848) #15	matn3a (ENSACLG00000022789) #17	laptm4a (ENSACLG00000022754) #18	PUM2 (ENSACLG00000022532) #21	RHOB (ENSACLG00000022471) #22	ENSACLG00000022458 #26	ENSACLG00000022386 #26	apobb.1 (ENSACLG00000022268) #26	hpcal1 (ENSACLG00000022249)	pdia6 (ENSACLG00000022205)	kcnf1a (ENSACLG00000022185)	ENSACLG00000022165	ENSACLG00000022152	rock2b (ENSACLG00000021968)	sobpb (ENSACLG00000021926)	ENSACLG00000021907	ENSACLG00000021785	mrap2b (ENSACLG00000021773)	ripply2 (ENSACLG00000021740)	SIM1 (ENSACLG00000021729)
Burton s mouthbrooder	MODERN SPECIES	312	rhag (ENSHBUG00000017476)	ENSHBUG00000017444	CRISP2 (ENSHBUG00000017430)	nrbp1 (ENSHBUG00000017423)	CAPN3 (ENSHBUG00000017348)	ENSHBUG00000017231	churc1 (ENSHBUG00000017213)	ttbk2b (ENSHBUG00000017197)	mideasa (ENSHBUG00000017149)	kcns3b (ENSHBUG00000017093) #11	ENSHBUG00000017077	zpax1 (ENSHBUG00000016589)	matn3a (ENSHBUG00000016568) #17	laptm4a (ENSHBUG00000016541) #18	PUM2 (ENSHBUG00000016453) #21	RHOB (ENSHBUG00000014710) #22	ENSHBUG00000014697 #26	ENSHBUG00000014684 #26	apobb.1 (ENSHBUG00000014629) #26	hpcal1 (ENSHBUG00000014621)	pdia6 (ENSHBUG00000000428)	kcnf1a (ENSHBUG00000000423)	ENSHBUG00000014567	ENSHBUG00000014563	ENSHBUG00000014548	rock2b (ENSHBUG00000014525)	sobpb (ENSHBUG00000014464)	ENSHBUG00000014443	ENSHBUG00000000419	mrap2b (ENSHBUG00000014337)	ripply2 (ENSHBUG00000014331)
Lyretail cichlid	MODERN SPECIES	314	ENSNBRG00000021309	nrbp1 (ENSNBRG00000021255)	CAPN3 (ENSNBRG00000021210)	ENSNBRG00000021193	churc1 (ENSNBRG00000021181)	ttbk2b (ENSNBRG00000021158)	mideasa (ENSNBRG00000021127)	kcns3b (ENSNBRG00000021113) #11	ENSNBRG00000020939	zpax1 (ENSNBRG00000020845)	ttc32 (ENSNBRG00000020824) #15	matn3a (ENSNBRG00000020810) #17	laptm4a (ENSNBRG00000020786) #18	PUM2 (ENSNBRG00000020737) #21	ENSNBRG00000020718	RHOB (ENSNBRG00000020653) #22	ENSNBRG00000020645 #26	ENSNBRG00000020599 #26	apobb.1 (ENSNBRG00000020576) #26	hpcal1 (ENSNBRG00000020567)	pdia6 (ENSNBRG00000020508)	kcnf1a (ENSNBRG00000020494)	ENSNBRG00000020490	ENSNBRG00000020485	ENSNBRG00000020479	rock2b (ENSNBRG00000020410)	sobpb (ENSNBRG00000020399)	ENSNBRG00000020385	ENSNBRG00000020350	mrap2b (ENSNBRG00000020325)	ripply2 (ENSNBRG00000020299)
Nile tilapia	MODERN SPECIES	6	rd3 (ENSONIG00000006049)	CRISP2 (ENSONIG00000006063)	ENSONIG00000006064	nrbp1 (ENSONIG00000006068)	ENSONIG00000006073	ENSONIG00000006086	churc1 (ENSONIG00000006088)	ttbk2b (ENSONIG00000039162)	mideasa (ENSONIG00000006090)	kcns3b (ENSONIG00000020447) #11	ENSONIG00000006091	zpax1 (ENSONIG00000006100)	ttc32 (ENSONIG00000006108) #15	matn3a (ENSONIG00000006110) #17	laptm4a (ENSONIG00000006112) #18	RHOB (ENSONIG00000020448) #22	ENSONIG00000006129 #26	ENSONIG00000040595 #26	hpcal1 (ENSONIG00000030660)	pdia6 (ENSONIG00000014670)	kcnf1a (ENSONIG00000020982)	ENSONIG00000020983	ENSONIG00000033186	rock2b (ENSONIG00000014677)	sobpb (ENSONIG00000014685)	ENSONIG00000014688	ENSONIG00000014690	mrap2 (ENSONIG00000039224)	ripply2 (ENSONIG00000040634)	SIM1 (ENSONIG00000014696)	ENSONIG00000014699
Midas cichlid	MODERN SPECIES	271	rhag (ENSACIG00000011753)	ENSACIG00000011739	ENSACIG00000011705	nrbp1 (ENSACIG00000011664)	CAPN3 (ENSACIG00000011615)	churc1 (ENSACIG00000011596)	ttbk2b (ENSACIG00000011568)	mideasa (ENSACIG00000011542)	kcns3b (ENSACIG00000011532) #11	ENSACIG00000011503	zpax1 (ENSACIG00000011384)	ttc32 (ENSACIG00000011356) #15	matn3a (ENSACIG00000011343) #17	laptm4a (ENSACIG00000011325) #18	PUM2 (ENSACIG00000010646) #21	RHOB (ENSACIG00000010517) #22	ENSACIG00000010492 #26	apobb.1 (ENSACIG00000010304) #26	hpcal1 (ENSACIG00000010288)	pdia6 (ENSACIG00000010258)	kcnf1a (ENSACIG00000010244)	ENSACIG00000010222	ENSACIG00000010216	rock2b (ENSACIG00000010153)	sobpb (ENSACIG00000010134)	ENSACIG00000010082	ENSACIG00000010042	mrap2b (ENSACIG00000009979)	ripply2 (ENSACIG00000009954)	SIM1 (ENSACIG00000009895)	ENSACIG00000009873
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00940000155605.a.a	ENSGT00940000179293	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Oryzias	ANCESTRAL SPECIES	19	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163.c.a	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A.g.a	ENSGT00940000155610.o.a
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT00940000156439.c	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163.c.a	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A.g.a	ENSGT00940000155610.o.a
Japanese Medaka HdrR	MODERN SPECIES	16	ENSORLG00000026479	ENSORLG00000012321	nrbp1 (ENSORLG00000012341)	ENSORLG00000012402	ENSORLG00000012412	churc1 (ENSORLG00000012430)	ttbk2b (ENSORLG00000012483)	mideasa (ENSORLG00000012495)	kcns3b (ENSORLG00000012504) #11	ENSORLG00000012527	zpax1 (ENSORLG00000012471)	ENSORLG00000012535 #15	matn3a (ENSORLG00000012543) #17	laptm4a (ENSORLG00000012561) #18	pum2 (ENSORLG00000012611) #21	RHOB (ENSORLG00000012619) #22	ENSORLG00000012638 #26	apobb.1 (ENSORLG00000012653) #26	hpcal1 (ENSORLG00000012666)	pdia6 (ENSORLG00000012695)	kcnf1a (ENSORLG00000012699)	ENSORLG00000012706	rock2b (ENSORLG00000012731)	sobpb (ENSORLG00000029359)	ENSORLG00000012770	ENSORLG00000012804	mrap2b (ENSORLG00000028866)	ripply2 (ENSORLG00000029408)	ENSORLG00000012851	sim1a (ENSORLG00000012840)	GRIK2 (ENSORLG00000012884)
Chinese medaka	MODERN SPECIES	676	slc30a1a (ENSOSIG00000019080)	rd3 (ENSOSIG00000019077)	rhag (ENSOSIG00000019073)	ENSOSIG00000019067	ENSOSIG00000019062	nrbp1 (ENSOSIG00000019041)	CAPN3 (ENSOSIG00000018964)	ENSOSIG00000018927	churc1 (ENSOSIG00000018919)	ttbk2b (ENSOSIG00000018917)	mideasa (ENSOSIG00000018900)	kcns3b (ENSOSIG00000018895) #11	ENSOSIG00000018885 #15	matn3a (ENSOSIG00000018883) #17	laptm4a (ENSOSIG00000018880) #18	RHOB (ENSOSIG00000018876) #22	ENSOSIG00000014725 #26	apobb.1 (ENSOSIG00000014681) #26	hpcal1 (ENSOSIG00000014671)	pdia6 (ENSOSIG00000012696)	kcnf1a (ENSOSIG00000012675)	rock2b (ENSOSIG00000011933)	sobpb (ENSOSIG00000011917)	ENSOSIG00000011912	ENSOSIG00000011119	mrap2b (ENSOSIG00000011116)	sim1a (ENSOSIG00000011103)	ENSOSIG00000011102	GRIK2 (ENSOSIG00000010901)	lin28b (ENSOSIG00000010898)	prep (ENSOSIG00000010859)
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163.d	ENSGT00390000011163.c.a	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00390000008152.A.g.a	ENSGT00940000155610.o.a
Javanese ricefish	MODERN SPECIES	16	rhag (ENSOJAG00000020376)	ENSOJAG00000020395	ENSOJAG00000020408	nrbp1 (ENSOJAG00000020453)	CAPN3 (ENSOJAG00000020571)	churc1 (ENSOJAG00000020629)	ttbk2b (ENSOJAG00000020640)	mideasa (ENSOJAG00000020650)	kcns3b (ENSOJAG00000020683) #11	ENSOJAG00000020689	zpax1 (ENSOJAG00000020798)	ttc32 (ENSOJAG00000020895) #15	matn3a (ENSOJAG00000020898) #17	laptm4a (ENSOJAG00000020907) #18	PUM2 (ENSOJAG00000020937) #21	RHOB (ENSOJAG00000021086) #22	hpcal1 (ENSOJAG00000021092)	apobb.1 (ENSOJAG00000021114) #26	kcnf1a (ENSOJAG00000021419)	ENSOJAG00000021426	rock2b (ENSOJAG00000021566)	sobpb (ENSOJAG00000022505)	ENSOJAG00000022510	ENSOJAG00000022563	ripply2 (ENSOJAG00000022567)	sim1a (ENSOJAG00000022574)	ENSOJAG00000022584	GRIK2 (ENSOJAG00000022652)	lin28b (ENSOJAG00000023134)	prep (ENSOJAG00000023160)	ENSOJAG00000023216
Indian medaka	MODERN SPECIES	22	nrbp1 (ENSOMEG00000005374)	ENSOMEG00000005387	ENSOMEG00000005425	ENSOMEG00000005464	churc1 (ENSOMEG00000005505)	ENSOMEG00000005519	mideasa (ENSOMEG00000005549)	kcns3b (ENSOMEG00000005571) #11	ENSOMEG00000005612	zpax1 (ENSOMEG00000005636)	ttc32 (ENSOMEG00000005656) #15	matn3a (ENSOMEG00000005810) #17	laptm4a (ENSOMEG00000005861) #18	PUM2 (ENSOMEG00000005889) #21	ENSOMEG00000005899	RHOB (ENSOMEG00000005912) #22	ENSOMEG00000005988 #26	apobb.1 (ENSOMEG00000006024) #26	hpcal1 (ENSOMEG00000006047)	pdia6 (ENSOMEG00000006060)	kcnf1a (ENSOMEG00000006072)	ENSOMEG00000001033	ROCK2 (ENSOMEG00000006171)	sobpb (ENSOMEG00000006204)	ENSOMEG00000006229	ENSOMEG00000006269	mrap2b (ENSOMEG00000006279)	ENSOMEG00000006291	sim1a (ENSOMEG00000006317)	ENSOMEG00000006337	GRIK2 (ENSOMEG00000006383)
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00940000155605.a.a	ENSGT00940000179293	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT01030000234517.C	ENSGT00940000165355.b	ENSGT00940000165355.a	ENSGT00940000160213.b	ENSGT00940000155646	ENSGT00940000154645.A	ENSGT00590000083139.d.b #26	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00940000157459.a	ENSGT00940000165020.a	ENSGT00390000011163	ENSGT00940000157336.p	ENSGT00940000156092.a.a	ENSGT00940000179293	ENSGT00940000155605.a.a	ENSGT00390000016613.d	ENSGT00940000156439.c	ENSGT00950000182844.b.a	ENSGT00730000112900	ENSGT00390000002089.a.a.a	ENSGT00940000156484.b.f
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT01030000234517.C	ENSGT00940000165355.b	ENSGT00940000165355.a	ENSGT00940000160213.b	ENSGT00940000155646	ENSGT00940000154645.A	ENSGT00590000083139.d.b #26	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00940000157459.a	ENSGT00940000165020.a	ENSGT00390000011163	ENSGT00940000157336.p	ENSGT00940000156092.a.a	ENSGT00940000179293	ENSGT00940000155605.a.a	ENSGT00390000016613.d	ENSGT00940000156439.c	ENSGT00950000182844.b.a	ENSGT00730000112900	ENSGT00390000002089.a.a.a	ENSGT00940000156484.b.f
Poecilia	ANCESTRAL SPECIES	9	ENSGT01030000234517.C	ENSGT00940000165355.b	ENSGT00940000165355.a	ENSGT00940000160213.b	ENSGT00940000155646	ENSGT00940000154645.A	ENSGT00590000083139.d.b #26	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00940000157459.a	ENSGT00940000165020.a	ENSGT00390000011163	ENSGT00940000157336.p	ENSGT00940000156092.a.a	ENSGT00940000179293	ENSGT00940000155605.a.a	ENSGT00390000016613.d	ENSGT00940000156439.c	ENSGT00950000182844.b.a	ENSGT00730000112900	ENSGT00390000002089.a.a.a	ENSGT00940000156484.b.e.b
Guppy	MODERN SPECIES	452	ROCK2 (ENSPREG00000006518)	ENSPREG00000006582	ENSPREG00000006589	kcnf1a (ENSPREG00000006609)	pdia6 (ENSPREG00000006623)	hpcal1 (ENSPREG00000006667)	apobb.1 (ENSPREG00000006694) #26	kcns3b (ENSPREG00000006779) #11	ENSPREG00000006789	zpax1 (ENSPREG00000006812)	ttc32 (ENSPREG00000006836) #15	matn3a (ENSPREG00000006856) #17	laptm4a (ENSPREG00000006879) #18	PUM2 (ENSPREG00000006905) #21	ENSPREG00000006950	RHOB (ENSPREG00000006955) #22	ENSPREG00000006995	ENSPREG00000007015 #26	mideasa (ENSPREG00000007068)	ttbk2b (ENSPREG00000007101)	churc1 (ENSPREG00000007139)	ENSPREG00000007156	CAPN3 (ENSPREG00000007189)	ENSPREG00000007230	nrbp1 (ENSPREG00000007246)	ENSPREG00000007288	ENSPREG00000007326	rhag (ENSPREG00000007379)	rd3 (ENSPREG00000007399)	ENSPREG00000007420	ENSPREG00000007432
NAME_6	ANCESTRAL SPECIES	2	ENSGT00880000138028.b.a	ENSGT00940000154164.c.b	ENSGT01030000234517.C	ENSGT00940000165355.b	ENSGT00940000160213.b	ENSGT00940000155646	ENSGT00940000154645.A	ENSGT00590000083139.d.b #26	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00940000157459.a	ENSGT00940000165020.a	ENSGT00390000011163	ENSGT00940000157336.p	ENSGT00940000156092.a.a	ENSGT00940000155605.a.a	ENSGT00390000016613.d	ENSGT00940000156439.c	ENSGT00950000182844.b.a	ENSGT00730000112900	ENSGT00390000002089.a.a.a	ENSGT00940000156484.b.e.b	ENSGT00940000156989
Amazon molly	MODERN SPECIES	253	ENSPFOG00000019310	sobpb (ENSPFOG00000019308)	ROCK2 (ENSPFOG00000019296)	ENSPFOG00000019292	kcnf1a (ENSPFOG00000020613)	pdia6 (ENSPFOG00000019286)	hpcal1 (ENSPFOG00000019283)	apobb.1 (ENSPFOG00000019273) #26	kcns3b (ENSPFOG00000020612) #11	ENSPFOG00000019246	zpax1 (ENSPFOG00000019223)	ttc32 (ENSPFOG00000019216) #15	matn3a (ENSPFOG00000024479) #17	laptm4a (ENSPFOG00000019214) #18	PUM2 (ENSPFOG00000019208) #21	RHOB (ENSPFOG00000020611) #22	ENSPFOG00000019199 #26	mideasa (ENSPFOG00000019192)	ttbk2b (ENSPFOG00000019189)	churc1 (ENSPFOG00000019186)	ENSPFOG00000019181	CAPN3 (ENSPFOG00000019159)	nrbp1 (ENSPFOG00000019129)	ENSPFOG00000019124	ENSPFOG00000024241	rhag (ENSPFOG00000019114)	si:ch211-22i13.2 (ENSPFOG00000019104)	rd3 (ENSPFOG00000019102)	slc30a1a (ENSPFOG00000019100)	nek2 (ENSPFOG00000019095)	lpgat1 (ENSPFOG00000019088)
Sailfin molly	MODERN SPECIES	596	sobpb (ENSPLAG00000001564)	ROCK2 (ENSPLAG00000001600)	ENSPLAG00000001613	kcnf1a (ENSPLAG00000001626)	pdia6 (ENSPLAG00000001641)	hpcal1 (ENSPLAG00000001646)	apobb.1 (ENSPLAG00000001709) #26	kcns3b (ENSPLAG00000001741) #11	ENSPLAG00000001752	zpax1 (ENSPLAG00000001762)	ttc32 (ENSPLAG00000001767) #15	matn3a (ENSPLAG00000001773) #17	laptm4a (ENSPLAG00000001781) #18	ENSPLAG00000001786	PUM2 (ENSPLAG00000001826) #21	RHOB (ENSPLAG00000001855) #22	ENSPLAG00000001861	ENSPLAG00000001867 #26	mideasa (ENSPLAG00000001878)	ttbk2b (ENSPLAG00000001888)	churc1 (ENSPLAG00000001895)	ENSPLAG00000001912	CAPN3 (ENSPLAG00000001933)	nrbp1 (ENSPLAG00000001960)	ENSPLAG00000001978	ENSPLAG00000001984	rhag (ENSPLAG00000001991)
NAME_4	ANCESTRAL SPECIES	8	ENSGT00940000154164.c.b	ENSGT01030000234517.C	ENSGT00940000165355.b	ENSGT00940000165355.a	ENSGT00940000160213.b	ENSGT00940000155646	ENSGT00940000154645.A	ENSGT00590000083139.d.b #26	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00590000083139.d.a.e #26	ENSGT00940000177475	ENSGT00590000083139.d.a.f #26	ENSGT00940000157459.a	ENSGT00940000165020.a	ENSGT00390000011163	ENSGT00940000157336.p	ENSGT00940000156092.a.a	ENSGT00940000155605.a.a	ENSGT00390000016613.d	ENSGT00940000156439.c	ENSGT00950000182844.b.a	ENSGT00390000002089.a.a.a	ENSGT00940000156484.b.e.b	ENSGT00950000183246
Mummichog	MODERN SPECIES	2259	sobpb (ENSFHEG00000021058)	rock2b (ENSFHEG00000021123)	ENSFHEG00000021144	ENSFHEG00000021171	pdia6 (ENSFHEG00000021184)	hpcal1 (ENSFHEG00000021197)	apobb.1 (ENSFHEG00000021383) #26	kcns3b (ENSFHEG00000021402) #11	ENSFHEG00000021415	ENSFHEG00000021422	zpax1 (ENSFHEG00000021478)	ttc32 (ENSFHEG00000021492) #15	matn3a (ENSFHEG00000021513) #17	laptm4a (ENSFHEG00000021543) #18	PUM2 (ENSFHEG00000021596) #21	RHOB (ENSFHEG00000021612) #22	ENSFHEG00000021627	ENSFHEG00000021709 #26	mideasa (ENSFHEG00000021719)	ttbk2b (ENSFHEG00000021748)	churc1 (ENSFHEG00000021840)	ENSFHEG00000021854	CAPN3 (ENSFHEG00000021865)	nrbp1 (ENSFHEG00000021932)	ENSFHEG00000021978	CRISP2 (ENSFHEG00000022008)	rhag (ENSFHEG00000022014)	rd3 (ENSFHEG00000022022)	slc30a1a (ENSFHEG00000022025)	ENSFHEG00000022033	nek2 (ENSFHEG00000022086)
Sheepshead minnow	MODERN SPECIES	150	sobpb (ENSCVAG00000001928)	rock2b (ENSCVAG00000001937)	ENSCVAG00000001942	ENSCVAG00000001944	kcnf1a (ENSCVAG00000001946)	pdia6 (ENSCVAG00000001951)	hpcal1 (ENSCVAG00000001955)	apobb.1 (ENSCVAG00000001977) #26	kcns3b (ENSCVAG00000001980) #11	ENSCVAG00000002297	zpax1 (ENSCVAG00000002347)	ttc32 (ENSCVAG00000002354) #15	matn3a (ENSCVAG00000002360) #17	laptm4a (ENSCVAG00000002372) #18	PUM2 (ENSCVAG00000002426) #21	RHOB (ENSCVAG00000002435) #22	ENSCVAG00000002444 #26	ENSCVAG00000002468 #26	mideasa (ENSCVAG00000002471)
Aplocheiloidei	ANCESTRAL SPECIES	27	ENSGT00950000182844.b.a	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.d	ENSGT00940000163503.B.c	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00940000177475	ENSGT00590000083139.d.a #26	ENSGT00590000083139.d.b #26	ENSGT00940000154645.A	ENSGT00940000155646	ENSGT00940000160213.b	ENSGT00940000165355.a	ENSGT00940000165355.b	ENSGT01030000234517.C	ENSGT00940000154164.c.b	ENSGT00880000138028.b.a	ENSGT00940000155695.i.a	ENSGT00940000167806	ENSGT00940000161952	ENSGT00940000156143.a.b
Turquoise killifish	MODERN SPECIES	1613	RD3 (ENSNFUG00015017642)	rhag (ENSNFUG00015017288)	Nfu_g_1_018698 (ENSNFUG00015017263)	nrbp1 (ENSNFUG00015017247)	CAPN3 (ENSNFUG00015016963)	ENSNFUG00015016912	ZFP106 (ENSNFUG00015016903)	CHURC1 (ENSNFUG00015016897)	ttbk2b (ENSNFUG00015016884)	mideasa (ENSNFUG00015016873)	KCNS3 (ENSNFUG00015016870) #11	ENSNFUG00015016640	ttc32 (ENSNFUG00015016630) #15	matn3a (ENSNFUG00015016620) #17	LAPTM4A (ENSNFUG00015016614) #18	RHOB (ENSNFUG00015016605) #22	ENSNFUG00015016407 #26	apobb.1 (ENSNFUG00015016359) #26	hpcal1 (ENSNFUG00015016344)	pdia6 (ENSNFUG00015016298)	KCNF1A (ENSNFUG00015016292)	ENSNFUG00015016287	ENSNFUG00015016284	ENSNFUG00015016280	ENSNFUG00015016276	ROCK2 (ENSNFUG00015013140)	SOBP (ENSNFUG00015013041)	Nfu_g_1_018982 (ENSNFUG00015013017)	ENSNFUG00015012987	ENSNFUG00015012976	MRAP2A (ENSNFUG00015012967)
Mangrove rivulus	MODERN SPECIES	20	rhag (ENSKMAG00000017826)	ENSKMAG00000017803	nrbp1 (ENSKMAG00000017747)	CAPN3 (ENSKMAG00000017627)	ENSKMAG00000017549	churc1 (ENSKMAG00000017527)	ttbk2b (ENSKMAG00000017500)	mideasa (ENSKMAG00000017459)	kcns3b (ENSKMAG00000017445) #11	ENSKMAG00000017411	zpax1 (ENSKMAG00000017380)	ttc32 (ENSKMAG00000017366) #15	matn3a (ENSKMAG00000017354) #17	laptm4a (ENSKMAG00000017330) #18	PUM2 (ENSKMAG00000017216) #21	RHOB (ENSKMAG00000017149) #22	ENSKMAG00000017142	ENSKMAG00000017119 #26	apobb.1 (ENSKMAG00000017074) #26	hpcal1 (ENSKMAG00000017057)	pdia6 (ENSKMAG00000017021)	kcnf1a (ENSKMAG00000017002)	ENSKMAG00000016998	ROCK2 (ENSKMAG00000016810)	sobpb (ENSKMAG00000016759)	ENSKMAG00000016739	ENSKMAG00000016678	mrap2b (ENSKMAG00000016660)	ripply2 (ENSKMAG00000016653)	SIM1 (ENSKMAG00000016606)	ENSKMAG00000016584
Otomorpha	ANCESTRAL SPECIES	603													ENSGT00940000161171 #20	ENSGT00940000162520.g	ENSGT00940000162520.h	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23
Clupeiformes	ANCESTRAL SPECIES	180	ENSGT00940000167629	ENSGT00940000156439.c	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00940000157459.a	ENSGT00940000155979.h #11	ENSGT00940000163503.B.c.m	ENSGT00390000011905 #15	ENSGT00940000157581.b #17	ENSGT00940000153446.b #18	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22
Atlantic herring	MODERN SPECIES	5										ENSCHAG00000024001	ENSCHAG00000023998	serpinb1l3 (ENSCHAG00000023955)	ENSCHAG00000023939	ERG28 (ENSCHAG00000023929)	ENSCHAG00000023921 #20	RHOB (ENSCHAG00000023918) #22	ENSCHAG00000023914	gnmt (ENSCHAG00000023902)	kcnk5a (ENSCHAG00000023893)	ENSCHAG00000023884	ENSCHAG00000023873	kif6 (ENSCHAG00000023850)	DAAM2 (ENSCHAG00000022109)	mocs1 (ENSCHAG00000021890)	fosl2 (ENSCHAG00000021875)	babam2 (ENSCHAG00000021811)	rbks (ENSCHAG00000021795)	ENSCHAG00000021781	ENSCHAG00000021772	ENSCHAG00000021751	mrpl33 (ENSCHAG00000021738)
Denticle herring	MODERN SPECIES	5	nkx1.2lb (ENSDCDG00000035555)	uvssa (ENSDCDG00000035557)	maea (ENSDCDG00000035559)	spon2b (ENSDCDG00000035560)	ENSDCDG00000035563	ccr6a (ENSDCDG00000035566)	cep43 (ENSDCDG00000035570)	rnf4 (ENSDCDG00000035572)	ENSDCDG00000035574	emilin1a (ENSDCDG00000035577)	ankef1a (ENSDCDG00000035582)	snap25a (ENSDCDG00000035583)	matn3a (ENSDCDG00000035584) #17	laptm4a (ENSDCDG00000035585) #18	PUM2 (ENSDCDG00000035588) #21	RHOB (ENSDCDG00000035627) #22	snapc1a (ENSDCDG00000035629)	SGPP1 (ENSDCDG00000035631)	rhoj (ENSDCDG00000035634)	kcnh5a (ENSDCDG00000035638)	ptk2bb (ENSDCDG00000035654)	CHRNA2 (ENSDCDG00000035666)	ENSDCDG00000035669	ENSDCDG00000035670	eif2b4 (ENSDCDG00000035672)	atraid (ENSDCDG00000035673)	snx17 (ENSDCDG00000035676)	znf513a (ENSDCDG00000035692)	ENSDCDG00000035697	ENSDCDG00000035701	FNDC4 (ENSDCDG00000035704)
Otophysi	ANCESTRAL SPECIES	445													ENSGT00940000161171 #20	ENSGT00940000162520.g	ENSGT00940000162520.h	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23
Characiphysae	ANCESTRAL SPECIES	90														ENSGT00940000162520.g.e	ENSGT00940000162520.h	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000009671	ENSGT00950000182994.B.a.a.b	ENSGT00390000018312	ENSGT00390000015725	ENSGT00940000157863	ENSGT00940000154836.b.b	ENSGT00940000157087.a.a.g	ENSGT00940000157087.a.a.h	ENSGT00940000159003	ENSGT00940000160016	ENSGT00440000039706	ENSGT00390000005532.k	ENSGT00390000009359.b	ENSGT00940000164964.a.a	ENSGT00960000187197
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	13	abhd14a (ENSIPUG00000019601)	acy1 (ENSIPUG00000019374)	ENSIPUG00000019347	CACNA2D2 (ENSIPUG00000019286)	ENSIPUG00000019270	ENSIPUG00000018695	ENSIPUG00000018607	ENSIPUG00000018558	ENSIPUG00000018550	ENSIPUG00000018543	ENSIPUG00000018535	ENSIPUG00000018514	ENSIPUG00000018498	ENSIPUG00000018494	ora1 (ENSIPUG00000018483)	ENSIPUG00000018464 #22	TMEM43 (ENSIPUG00000018435)	zgc:112334 (ENSIPUG00000018409)	ndufaf3 (ENSIPUG00000018399)	NCKIPSD (ENSIPUG00000018366)	slc25a20 (ENSIPUG00000018345)	prkar2ab (ENSIPUG00000018309)	ENSIPUG00000018212	ENSIPUG00000018172	ora4 (ENSIPUG00000018163)	ssu72 (ENSIPUG00000018110)	tmem240 (ENSIPUG00000018091)	ATAD3A (ENSIPUG00000018063)	mrpl20 (ENSIPUG00000018055)	sdhb (ENSIPUG00000017976)	MFAP2 (ENSIPUG00000017967)
Channel catfish	MODERN SPECIES	28	trappc12 (ENSIPUG00000009023)	tssc1 (ENSIPUG00000008984)	MYT1L (ENSIPUG00000008902)	pxdn (ENSIPUG00000008838)	CCR6 (ENSIPUG00000008828)	ATP6V1C2 (ENSIPUG00000008783)	nol10 (ENSIPUG00000008691)	odc1 (ENSIPUG00000008659)	Odc1 (ENSIPUG00000008600)	HPCAL1 (ENSIPUG00000008521)	sdc1 (ENSIPUG00000008506) #20	ENSIPUG00000008489	ENSIPUG00000008477	ENSIPUG00000008462	ENSIPUG00000008447	RHOB (ENSIPUG00000008426) #22	hs1bp3 (ENSIPUG00000008403) #23	ENSIPUG00000008341	arel1 (ENSIPUG00000008259)	fcf1 (ENSIPUG00000008200)	VASH1 (ENSIPUG00000008160)	angel1 (ENSIPUG00000008142)	LRRC74A (ENSIPUG00000008118)	ENSIPUG00000008106	ENSIPUG00000007940	rps6kl1 (ENSIPUG00000007905)	dlst (ENSIPUG00000007845)	prox2 (ENSIPUG00000007832)	esrrb (ENSIPUG00000007762)	gpatch2l (ENSIPUG00000007721)	ift43 (ENSIPUG00000007710)
Characiphysae_b	ANCESTRAL SPECIES	94														ENSGT00940000162520.g.e	ENSGT00940000162520.h	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000009671	ENSGT00950000182994.B.a.a.b	ENSGT00390000018312	ENSGT00390000015725	ENSGT00940000157863	ENSGT00940000154836.b.b	ENSGT00940000157087.a.a.g	ENSGT00940000159003	ENSGT00940000160016	ENSGT00440000039706	ENSGT00390000005532.k	ENSGT00390000009359.b	ENSGT00940000155758	ENSGT00390000017736.b	ENSGT00390000013558.a.a
Electric eel	MODERN SPECIES	315											ENSEEEG00000022258	ENSEEEG00000022257	ENSEEEG00000022256	ENSEEEG00000022254	abi3bpb (ENSEEEG00000022251)	ENSEEEG00000022247 #22	TMEM43 (ENSEEEG00000022245)	zgc:112334 (ENSEEEG00000022236)	ndufaf3 (ENSEEEG00000022233)	NCKIPSD (ENSEEEG00000022194)	slc25a20 (ENSEEEG00000022189)	prkar2ab (ENSEEEG00000022185)	ENSEEEG00000022183	fblim1 (ENSEEEG00000022182)	slc25a34 (ENSEEEG00000022181)	FBXO42 (ENSEEEG00000022177)	SZRD1 (ENSEEEG00000022174)	necap2 (ENSEEEG00000022171)	ENSEEEG00000022169	MFAP2 (ENSEEEG00000022163)	sdhb (ENSEEEG00000022160)
Characoidei	ANCESTRAL SPECIES	41	ENSGT00390000002448	ENSGT00730000111137	ENSGT00940000155671.z	ENSGT00940000155671.y.a	ENSGT00940000157666	ENSGT00940000164908	ENSGT01030000234667.b.f.b	ENSGT00940000155646.m	ENSGT00390000004263.b	ENSGT00390000007900	ENSGT00950000182995.e.a.a.a	ENSGT00940000154645.A	ENSGT00940000161171 #20	ENSGT00940000162520.g.e	ENSGT00940000162520.h	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000155823.A	ENSGT00940000160884	ENSGT00940000156723	ENSGT00940000153117.B	ENSGT00390000012703.b	ENSGT00940000159057	ENSGT00940000154297.A.g.a	ENSGT00940000155454.w.b	ENSGT00940000155454.w.a	ENSGT00940000159815	ENSGT00930000151014.q	ENSGT00940000154790.b.a.b	ENSGT00940000153433.A.e	ENSGT00410000025698.b
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	611								ENSPNAG00000022552	ENSPNAG00000022531	ENSPNAG00000022397	ENSPNAG00000022276	ENSPNAG00000022202	PLXNA2 (ENSPNAG00000022070)	ENSPNAG00000021992	ora1 (ENSPNAG00000021976)	ENSPNAG00000021968 #22	TMEM43 (ENSPNAG00000021935)	zgc:112334 (ENSPNAG00000021830)	ndufaf3 (ENSPNAG00000021801)	NCKIPSD (ENSPNAG00000021776)	slc25a20 (ENSPNAG00000021725)
Red-bellied piranha	MODERN SPECIES	16	trappc12 (ENSPNAG00000010901)	eipr1 (ENSPNAG00000010893)	MYT1L (ENSPNAG00000010842)	PXDN (ENSPNAG00000010703)	zgc:113142 (ENSPNAG00000010643)	CCR6 (ENSPNAG00000010624)	PDIA6 (ENSPNAG00000010615)	ATP6V1C2 (ENSPNAG00000010550)	nol10 (ENSPNAG00000001397)	odc1 (ENSPNAG00000010441)	HPCAL1 (ENSPNAG00000010423)	ENSPNAG00000010407	ENSPNAG00000010398	ENSPNAG00000010377	ENSPNAG00000010359	RHOB (ENSPNAG00000010304) #22	hs1bp3 (ENSPNAG00000010292) #23	LTBP2 (ENSPNAG00000010267)	AREL1 (ENSPNAG00000010175)	fcf1 (ENSPNAG00000010076)	VASH1 (ENSPNAG00000010048)	ENSPNAG00000010007	LRRC74A (ENSPNAG00000001356)	ENSPNAG00000001354	ENSPNAG00000006678	CCR6 (ENSPNAG00000009905)	prox2 (ENSPNAG00000009888)	ENSPNAG00000001345	dlst (ENSPNAG00000009820)	esrrb (ENSPNAG00000006181)	GPATCH2L (ENSPNAG00000009720)
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	14	CACNA2D2 (ENSAMXG00000013697)	ENSAMXG00000033131	ENSAMXG00000042223	ENSAMXG00000029893	ENSAMXG00000012975	ENSAMXG00000034145	ENSAMXG00000039394	ENSAMXG00000041667	ENSAMXG00000043427	ENSAMXG00000013061	plekha8 (ENSAMXG00000037391)	PLXNA2 (ENSAMXG00000034599)	ENSAMXG00000041954	ENSAMXG00000039063	ora1 (ENSAMXG00000024873)	ENSAMXG00000036616 #22	ENSAMXG00000008389	zgc:112334 (ENSAMXG00000036288)	ndufaf3 (ENSAMXG00000033274)	NCKIPSD (ENSAMXG00000031211)	slc25a20 (ENSAMXG00000036958)	prkar2ab (ENSAMXG00000008476)	ENSAMXG00000039278	fblim1 (ENSAMXG00000031680)	slc25a34 (ENSAMXG00000029058)	FBXO42 (ENSAMXG00000008531)	ENSAMXG00000008547	necap2 (ENSAMXG00000008558)	ENSAMXG00000035105	MFAP2 (ENSAMXG00000042462)	sdhb (ENSAMXG00000031219)
Mexicana tetra	MODERN SPECIES	24	ENSAMXG00000030074	trappc12 (ENSAMXG00000013846)	eipr1 (ENSAMXG00000039015)	ENSAMXG00000043399	ENSAMXG00000029091	PXDN (ENSAMXG00000013926)	zgc:113142 (ENSAMXG00000037721)	CCR6 (ENSAMXG00000026329)	PDIA6 (ENSAMXG00000013951)	ATP6V1C2 (ENSAMXG00000013973)	nol10 (ENSAMXG00000014006)	odc1 (ENSAMXG00000014026)	HPCAL1 (ENSAMXG00000031023)	SDC1 (ENSAMXG00000030549) #20	ENSAMXG00000040525	RHOB (ENSAMXG00000026330) #22	hs1bp3 (ENSAMXG00000032736) #23	ENSAMXG00000043609	ENSAMXG00000014843	mterf4 (ENSAMXG00000036876)	ENSAMXG00000026277	ENSAMXG00000026276	klhl24a (ENSAMXG00000014840)	YEATS2 (ENSAMXG00000014837)	ENSAMXG00000035132	acsm3 (ENSAMXG00000014820)	ncapd2 (ENSAMXG00000014774)	ENSAMXG00000041346	camk2n1a (ENSAMXG00000031429)	mul1a (ENSAMXG00000043736)	alg3 (ENSAMXG00000001480)
Cyprinoidei	ANCESTRAL SPECIES	128	ENSGT00940000154598	ENSGT00390000015102.a.a	ENSGT00390000003303.b	ENSGT00940000155727.o.b	ENSGT00940000156483.h.b	ENSGT00390000008642	ENSGT00940000155634.q.b	ENSGT00940000156927	ENSGT00940000163359.a.a	ENSGT00940000155786.k.b	ENSGT00390000010423	ENSGT00940000167343	ENSGT00390000007020	ENSGT00940000156510.g	ENSGT00940000157575 #21	ENSGT00950000182945.b.a.a.b.b.b #22
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.b.db.a #22
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1651																ENSCARG00000034420 #22	zgc:112334 (ENSCARG00000034433)	ENSCARG00000034455
Goldfish	MODERN SPECIES	3097													ENSCARG00000065952	ENSCARG00000042041	ENSCARG00000042112	RHOB (ENSCARG00000042285) #22	zgc:112334 (ENSCARG00000042299)	ENSCARG00000042367	FBXO42 (ENSCARG00000042474)	ATAD3A (ENSCARG00000042615)	sdhb (ENSCARG00000043461)	ENSCARG00000043483
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.b.db.a #22
Common carp reference	MODERN SPECIES	5	camk1ga (ENSCCRG00000037302)	ENSCCRG00000037313	ENSCCRG00000072728	ENSCCRG00000053602	ENSCCRG00000058680	ENSCCRG00000061800	ENSCCRG00000079460	ENSCCRG00000053177	ENSCCRG00000077094	ENSCCRG00000021921	ENSCCRG00000034532	ENSCCRG00000062475	ENSCCRG00000005968	ENSCCRG00000062401	ENSCCRG00000068310	ENSCCRG00000008362 #22	ENSCCRG00000008372	ENSCCRG00000019780	ENSCCRG00000069717	ENSCCRG00000076021	ENSCCRG00000051121	ENSCCRG00000058061	ENSCCRG00000069978	ENSCCRG00000050141	ENSCCRG00000061700	ENSCCRG00000072450	ENSCCRG00000027045	ENSCCRG00000072225	ENSCCRG00000029666	celsr2 (ENSCCRG00000029708)	dstyk (ENSCCRG00000044622)
Cyprininae	ANCESTRAL SPECIES	91														ENSGT01030000234553.a	ENSGT01030000234553.b.b	ENSGT00950000182945.b.a.a.b.b.b.db.b #22	ENSGT00390000009671	ENSGT00950000182994.B.a.a.b	ENSGT00390000018312	ENSGT00390000015725	ENSGT00940000157863	ENSGT00940000154836.b.b	ENSGT00940000157087.a.a	ENSGT00940000159003	ENSGT00940000160016	ENSGT00440000039706.p	ENSGT00730000111059.a.a	ENSGT00390000015823	ENSGT00390000017736.b	ENSGT00390000009359.b	ENSGT00940000155758
Goldfish	MODERN SPECIES	2093													ENSCARG00000034742	ENSCARG00000034750	ora1 (ENSCARG00000034754)	ENSCARG00000034761 #22	ndufaf3 (ENSCARG00000034945)	NCKIPSD (ENSCARG00000035016)	slc25a20 (ENSCARG00000035962)
Cyprininae_a	ANCESTRAL SPECIES	370														ENSGT01030000234553.a	ENSGT01030000234553.b.b	ENSGT00950000182945.b.a.a.b.b.b.db.b #22	ENSGT00390000009671	ENSGT00950000182994.B.a.a.b	ENSGT00390000018312	ENSGT00390000015725	ENSGT00940000157863	ENSGT00940000154836.b.b	ENSGT00940000157087.a.a	ENSGT00940000159003	ENSGT00940000160016	ENSGT00440000039706.p	ENSGT00730000111059.a.a	ENSGT00390000015823	ENSGT00390000009359.b	ENSGT00390000010165.h	ENSGT00550000076432
Golden-line barbel	MODERN SPECIES	1603													ENSSGRG00000033232	ENSSGRG00000033233	ora1 (ENSSGRG00000033235)	RHOB (ENSSGRG00000033237) #22	TMEM43 (ENSSGRG00000033263)	ndufaf3 (ENSSGRG00000033290)	NCKIPSD (ENSSGRG00000033299)	prkar2ab (ENSSGRG00000033392)	ENSSGRG00000033397	slc25a34 (ENSSGRG00000033494)	FBXO42 (ENSSGRG00000033498)	sdhb (ENSSGRG00000033502)
Common carp reference	MODERN SPECIES	43											ENSCCRG00000008357	ENSCCRG00000078063	ENSCCRG00000067816	ENSCCRG00000075687	ENSCCRG00000043748	ENSCCRG00000059257 #22	ENSCCRG00000043686	zgc:112334 (ENSCCRG00000043679)	ndufaf3 (ENSCCRG00000043577)	ENSCCRG00000058224	slc25a20 (ENSCCRG00000019986)	prkar2ab (ENSCCRG00000067289)	ENSCCRG00000076150	fblim1 (ENSCCRG00000049493)	slc25a34 (ENSCCRG00000049498)	ENSCCRG00000057309	ENSCCRG00000049514	ENSCCRG00000078545	ENSCCRG00000049675	necap2 (ENSCCRG00000066144)	ssu72 (ENSCCRG00000050134)
Cyprininae	ANCESTRAL SPECIES	1406															ENSGT00940000157575.j #21	ENSGT00950000182945.b.a.a.b.b.b.eb #22
Cyprininae_a	ANCESTRAL SPECIES	269	ENSGT00390000003303.b.a	ENSGT00940000155727.o.b.a	ENSGT00940000156483.h.b.a.b	ENSGT00390000008642.r	ENSGT00940000155634.q.b.a	ENSGT00940000165223.c.b	ENSGT00940000159071.y.a.f.a	ENSGT00940000156927.i	ENSGT00940000163359.a.a.c	ENSGT00940000155786.k.b.b	ENSGT00390000010423.a	ENSGT01030000234567.B.a.a.b.a.a.f.a.c	ENSGT00940000167343.t.b	ENSGT00940000156510.g.b	ENSGT00940000157575.j #21	ENSGT00950000182945.b.a.a.b.b.b.eb #22
Common carp reference	MODERN SPECIES	28	tmem242 (ENSCCRG00000063230)	arid1b (ENSCCRG00000003239)	ccnk (ENSCCRG00000050860)	ccdc85cb (ENSCCRG00000050857)	ism2b (ENSCCRG00000024399)	sptlc2b (ENSCCRG00000013553)	snw1 (ENSCCRG00000023924)	ENSCCRG00000073302	ENSCCRG00000035307	nrxn3b (ENSCCRG00000027234)	ENSCCRG00000060667	ENSCCRG00000057583	ENSCCRG00000071579	tshr (ENSCCRG00000049861)	ENSCCRG00000064504 #21	ENSCCRG00000055263 #22	ENSCCRG00000036293 #26	ENSCCRG00000022269	ENSCCRG00000012354	ENSCCRG00000012339	ENSCCRG00000029990	rps6kc1 (ENSCCRG00000011581)	ENSCCRG00000064624	ENSCCRG00000009697	ENSCCRG00000004191	fynb (ENSCCRG00000056134)	ENSCCRG00000056471	ENSCCRG00000004150	ufl1 (ENSCCRG00000024687)	dse (ENSCCRG00000049243)	COL10A1 (ENSCCRG00000076105)
Osteoglossiformes	ANCESTRAL SPECIES	48								ENSGT00940000155979.g #11	ENSGT00940000155745 #16	ENSGT00940000157581.a #17	ENSGT00940000153446.b.`b #18	ENSGT00940000161171 #20	ENSGT00940000157575 #21	ENSGT00940000177852	ENSGT00940000162520.h	ENSGT00950000182945.b.a.a.b.b.b #22	ENSGT00390000013092 #23	ENSGT00940000160140.b #24	ENSGT00950000185286	ENSGT00390000009688 #25	ENSGT00590000083139.c #26	ENSGT00590000083139.d #26	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213.a	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.B.b
Asian bonytongue	MODERN SPECIES	6	utp25 (ENSSFOG00015004048)	ENSSFOG00015032465	osr1 (ENSSFOG00015028228) #14	NT5C1B (ENSSFOG00015004011) #13	rdh14a (ENSSFOG00015026208) #12	kcns3a (ENSSFOG00015003986) #11	ENSSFOG00015003956	ENSSFOG00015003816	wdr35 (ENSSFOG00015003709) #16	matn3b (ENSSFOG00015003648) #17	LAPTM4A (ENSSFOG00015003600) #18	ENSSFOG00015003579	ENSSFOG00015031760 #20	PUM2 (ENSSFOG00015003476) #21	ENSSFOG00015003397	RHOB (ENSSFOG00015003377) #22	hs1bp3 (ENSSFOG00015028023) #23	GDF7 (ENSSFOG00015026533) #24	ldah (ENSSFOG00015003305) #25	APOB (ENSSFOG00015003291) #26	ENSSFOG00015003230	hpcal1 (ENSSFOG00015025652)	odc1 (ENSSFOG00015003183)	nol10 (ENSSFOG00015003083)	ATP6V1C2 (ENSSFOG00015003022)	pdia6 (ENSSFOG00015002978)	KCNF1 (ENSSFOG00015002954)	si:dkey-18j18.3 (ENSSFOG00015031625)	slc66a3 (ENSSFOG00015032661)	rock2a (ENSSFOG00015002704)	sobpa (ENSSFOG00015031132)
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	83	DYNLT1 (ENSPKIG00000023942)	ENSPKIG00000023952	tbx18 (ENSPKIG00000023964)	irak1bp1 (ENSPKIG00000023989)	ENSPKIG00000023976	PHIP (ENSPKIG00000024039)	HMGN3 (ENSPKIG00000024106)	LCA5 (ENSPKIG00000024115)	sh3bgrl2 (ENSPKIG00000024140)	zgc:153284 (ENSPKIG00000024153)	rps12 (ENSPKIG00000024161)	eya4 (ENSPKIG00000024193)	tcf21 (ENSPKIG00000003912)	tbpl1 (ENSPKIG00000003946)	ENSPKIG00000003988	RHOB (ENSPKIG00000004010) #22	ENSPKIG00000004037 #26	HPCAL1 (ENSPKIG00000004065)	KCNF1 (ENSPKIG00000004076)	ENSPKIG00000004088	rnf146 (ENSPKIG00000004102)	RSPO3 (ENSPKIG00000004114)	fbxo16 (ENSPKIG00000004140)	nrbp1 (ENSPKIG00000004173)	ENSPKIG00000004212	esrrga (ENSPKIG00000004225)	si:ch73-21k16.4 (ENSPKIG00000004245)	ENSPKIG00000004279	LPIN1 (ENSPKIG00000004348)	GNPAT (ENSPKIG00000004459)	ITSN2 (ENSPKIG00000004575)
P. kingsleyae	MODERN SPECIES	297								kcns3a (ENSPKIG00000022974) #11	wdr35 (ENSPKIG00000023031) #16	matn3b (ENSPKIG00000023132) #17	LAPTM4A (ENSPKIG00000023157) #18	ENSPKIG00000023176	PUM2 (ENSPKIG00000023195) #21	ENSPKIG00000023224	ENSPKIG00000023238	RHOB (ENSPKIG00000023261) #22	hs1bp3 (ENSPKIG00000023287) #23	GDF7 (ENSPKIG00000023294) #24	ENSPKIG00000023311	LDAH (ENSPKIG00000023322) #25	ENSPKIG00000023333	ENSPKIG00000023346	APOB (ENSPKIG00000023371) #26	hpcal1 (ENSPKIG00000023413)	odc1 (ENSPKIG00000023433)	nol10 (ENSPKIG00000023459)	ATP6V1C2 (ENSPKIG00000023505)	pdia6 (ENSPKIG00000000066)	KCNF1 (ENSPKIG00000000077)	si:dkey-18j18.3 (ENSPKIG00000000085)	slc66a3 (ENSPKIG00000000100)
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1662											ENSCMIG00000015683	ENSCMIG00000015680 #20	ENSCMIG00000015678	PUM2 (ENSCMIG00000015605) #21	ENSCMIG00000015579	RHOB (ENSCMIG00000015575) #22	ENSCMIG00000015573 #23	ENSCMIG00000015572	ENSCMIG00000015570 ##24	ldah (ENSCMIG00000015566) #25	ENSCMIG00000015555 #26	ENSCMIG00000015550	sf3a3 (ENSCMIG00000015469)	ENSCMIG00000015442
Elephant shark	MODERN SPECIES	1521	mecr (ENSCMIG00000016925)	ENSCMIG00000016931	srsf4 (ENSCMIG00000016933)	ENSCMIG00000016937	ENSCMIG00000016945	EPB41 (ENSCMIG00000017073)	ccn2b (ENSCMIG00000017312)	stx12 (ENSCMIG00000017328)	trnau1apa (ENSCMIG00000017341)	ppp1r8 (ENSCMIG00000017344)	matn1 (ENSCMIG00000017349)	ENSCMIG00000017356	ENSCMIG00000017370	ENSCMIG00000017385	pum1 (ENSCMIG00000017449)	ENSCMIG00000017524 #22	nkain1 (ENSCMIG00000017526)	snrnp40 (ENSCMIG00000017529)	zcchc17 (ENSCMIG00000017532)	ENSCMIG00000017535	ENSCMIG00000017537	ENSCMIG00000017541	rab42a (ENSCMIG00000017544)	ENSCMIG00000017549	cited4b (ENSCMIG00000017572)	ENSCMIG00000017574	ENSCMIG00000017577	ENSCMIG00000017584	ENSCMIG00000017587	asap3 (ENSCMIG00000017594)	tcea3 (ENSCMIG00000017608)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.b #22
Hagfish	MODERN SPECIES	1504	ENSEBUG00000013527	ENSEBUG00000008599	ENSEBUG00000011063	ENSEBUG00000008970	ENSEBUG00000008954	ENSEBUG00000015674	ENSEBUG00000010543	ENSEBUG00000013421	ckmb (ENSEBUG00000016175)	ENSEBUG00000003878	ENSEBUG00000007491	ENSEBUG00000004172	blcap (ENSEBUG00000015666)	KCNF1 (ENSEBUG00000011427)	SLCO4A1 (ENSEBUG00000005183)	RHOB (ENSEBUG00000002113) #22	uqcc1 (ENSEBUG00000015220)	ENSEBUG00000013043	ENSEBUG00000003592	ENSEBUG00000000607
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	2995																ENSPMAG00000007986 #22
Lamprey	MODERN SPECIES	1923															ENSPMAG00000001670	ENSPMAG00000001664 #22	ENSPMAG00000001661	USP15 (ENSPMAG00000001614)
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Oryzias	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Oryzias_b	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Indian medaka	MODERN SPECIES	532	mthfr (ENSOMEG00000023007)	slc2a1a (ENSOMEG00000022993)	slc38a5b (ENSOMEG00000022965)	ccdc22 (ENSOMEG00000022919)	tbc1d25 (ENSOMEG00000022886)	ndufb11 (ENSOMEG00000000612)	rtel1 (ENSOMEG00000022856)	icmt (ENSOMEG00000022793)	rpl22 (ENSOMEG00000022781)	rcc2 (ENSOMEG00000022773)	ENSOMEG00000022761	phc2a (ENSOMEG00000022758)	si:dkeyp-104h9.5 (ENSOMEG00000022749)	plod1a (ENSOMEG00000022732)	tpx2 (ENSOMEG00000022711)	ENSOMEG00000022667 ##22	tpk2 (ENSOMEG00000022511)	GMEB2 (ENSOMEG00000022498)	pdyn (ENSOMEG00000022484)	stk35 (ENSOMEG00000022473)	ndnl2 (ENSOMEG00000022460)	ENSOMEG00000022403	ENSOMEG00000022362	ENSOMEG00000022332	ENSOMEG00000022311	ENSOMEG00000022295	ENSOMEG00000022286
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Salmo	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000117672	ENSSSAG00000085449	ube2t (ENSSSAG00000009596)	ENSSSAG00000050310	KCNA10 (ENSSSAG00000106262)	ENSSSAG00000051627	KCNA3 (ENSSSAG00000039570)	ENSSSAG00000116252	ENSSSAG00000039599	ENSSSAG00000101085	ENSSSAG00000097464	ENSSSAG00000095161	ENSSSAG00000097310	ENSSSAG00000095191	arhgef3l (ENSSSAG00000083682)	ENSSSAG00000116020 ##22	ENSSSAG00000108197	ENSSSAG00000118767	ENSSSAG00000048162	ENSSSAG00000048260	ENSSSAG00000095322	ENSSSAG00000106860	abcd1 (ENSSSAG00000047976)	ENSSSAG00000048040	ENSSSAG00000048105	ENSSSAG00000106351	zgc:113363 (ENSSSAG00000081927)	ENSSSAG00000084733	tfe3a (ENSSSAG00000056524)	ENSSSAG00000116135	ENSSSAG00000085513
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Anura	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Leishan spiny toad	MODERN SPECIES	889															ENSLLEG00000012405	ENSLLEG00000012221 ##22	ENSLLEG00000012147
Amniota	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Sauria	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Archosauria	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Aves	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Neognathae	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Anatidae	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Duck	MODERN SPECIES	18	KDM5B (ENSAPLG00000007715)	ENSAPLG00000007649	RABIF (ENSAPLG00000027144)	KLHL12 (ENSAPLG00000007219)	LGR6 (ENSAPLG00000006712)	ENSAPLG00000005477	SLC45A3 (ENSAPLG00000005321)	NUCKS1 (ENSAPLG00000026584)	RAB29 (ENSAPLG00000004926)	RSBN1 (ENSAPLG00000004887)	PHTF1 (ENSAPLG00000004512)	MAGI3 (ENSAPLG00000002599)	LRIG2 (ENSAPLG00000001904)	SLC16A1 (ENSAPLG00000000583)	TAFA3 (ENSAPLG00000016404)	ENSAPLG00000016291 ##22	MOV10 (ENSAPLG00000015955)	CAPZA1 (ENSAPLG00000015264)	ST7L (ENSAPLG00000014708)	WNT2B (ENSAPLG00000014558)	CTTNBP2NL (ENSAPLG00000020349)	KCND3 (ENSAPLG00000013982)	DDX20 (ENSAPLG00000013826)	INKA2 (ENSAPLG00000013825)	ENSAPLG00000013698	ENSAPLG00000013695	ENSAPLG00000013694	ATP5PB (ENSAPLG00000013428)	WDR77 (ENSAPLG00000013403)	C6orf132 (ENSAPLG00000017218)	GUCA1ANB (ENSAPLG00000001761)
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Zebra finch	MODERN SPECIES	19											MAGI3 (ENSTGUG00000017520)	LRIG2 (ENSTGUG00000017525)	SLC16A1 (ENSTGUG00000017527)	TAFA3 (ENSTGUG00000029508)	PPM1J (ENSTGUG00000022043)	ENSTGUG00000017533 ##22	MOV10 (ENSTGUG00000017534)	CAPZA1 (ENSTGUG00000017536)	ST7L (ENSTGUG00000017538)	WNT2B (ENSTGUG00000017545)	CTTNBP2NL (ENSTGUG00000023106)	KCND3 (ENSTGUG00000013643)	ENSTGUG00000027469	ENSTGUG00000023092	RAP1A (ENSTGUG00000001456)	ENSTGUG00000001462	ENSTGUG00000001465	ENSTGUG00000020910	ENSTGUG00000021654	ENSTGUG00000023336	ENSTGUG00000001480
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.a ##22
Lamprey	MODERN SPECIES	2826																ENSPMAG00000005525 ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Otophysi	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Goldfish	MODERN SPECIES	2543														ENSCARG00000047043	ora1 (ENSCARG00000047069)	ENSCARG00000047072 ##22
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Atlantic herring	MODERN SPECIES	20	ENSCHAG00000005297	ENSCHAG00000005346	fam219aa (ENSCHAG00000005359)	PRDM2 (ENSCHAG00000005397)	FOXJ3 (ENSCHAG00000005424)	rimkla (ENSCHAG00000005458)	zmynd12 (ENSCHAG00000005512)	slc16a1b (ENSCHAG00000005537)	ENSCHAG00000005566	ENSCHAG00000005596	ENSCHAG00000005602	ENSCHAG00000005615	ENSCHAG00000005621	TAFA3 (ENSCHAG00000005632)	ENSCHAG00000005641	ENSCHAG00000005660 ##22	mov10b.1 (ENSCHAG00000005748)	wnt2bb (ENSCHAG00000006681)	NEU3 (ENSCHAG00000006736)	ENSCHAG00000006746	ENSCHAG00000006783	NEU3 (ENSCHAG00000006769)	ENSCHAG00000006866	NEU3 (ENSCHAG00000006992)	NEU3 (ENSCHAG00000007041)	NEU3 (ENSCHAG00000007073)	capza1b (ENSCHAG00000007166)	cttnbp2nlb (ENSCHAG00000007944)	ENSCHAG00000007954	ENSCHAG00000007961	kcnd3 (ENSCHAG00000000783)
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Salmo	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Atlantic salmon	MODERN SPECIES	6	HES5 (ENSSSAG00000073724)	tas1r1 (ENSSSAG00000070000)	ENSSSAG00000093278	ENSSSAG00000093225	srms (ENSSSAG00000109475)	nol4lb (ENSSSAG00000073696)	commd7 (ENSSSAG00000073692)	dnmt3bb.1 (ENSSSAG00000071787)	mapre1 (ENSSSAG00000096379)	acss2 (ENSSSAG00000070353)	ENSSSAG00000070314	osbpl2b (ENSSSAG00000075579)	ENSSSAG00000094929	ENSSSAG00000067539	tmem115 (ENSSSAG00000083440)	ENSSSAG00000050701 ##22	sema3h (ENSSSAG00000067499)	ENSSSAG00000067493	borcs6 (ENSSSAG00000067491)	si:dkey-72l14.3 (ENSSSAG00000067487)	xpc (ENSSSAG00000067478)	arih2 (ENSSSAG00000067452)	impdh2 (ENSSSAG00000067425)	dalrd3 (ENSSSAG00000067402)	ENSSSAG00000067335	ENSSSAG00000067310	wdr6 (ENSSSAG00000067303)	ENSSSAG00000067253	ENSSSAG00000115529	mgll (ENSSSAG00000067243)	prkar2aa (ENSSSAG00000077456)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.b.a.b ##22
Lamprey	MODERN SPECIES	5212																ENSPMAG00000005244 ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.a ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.a ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.a ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.a ##22
Amniota	ANCESTRAL SPECIES	26	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000163431	ENSGT00390000014226
Sauria	ANCESTRAL SPECIES	24	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00950000182977.A.h	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000163431	ENSGT00390000014226
Archelosauria	ANCESTRAL SPECIES	22	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00950000182977.A.h	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000163431	ENSGT00390000014226
Archosauria	ANCESTRAL SPECIES	23	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT01000000218223	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000164058	ENSGT01030000234555.a.a.b.a.b.a.m	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a.n	ENSGT00390000001958	ENSGT00390000010711
Aves	ANCESTRAL SPECIES	25	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000164058	ENSGT01030000234555.a.a.b.a.b.a.m	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a.n	ENSGT00390000001958	ENSGT00390000010711
Neognathae	ANCESTRAL SPECIES	24	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000164058	ENSGT01030000234555.a.a.b.a.b.a.m	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a.n	ENSGT00390000001958	ENSGT00390000010711
Galloanserae	ANCESTRAL SPECIES	35	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000164058	ENSGT01030000234555.a.a.b.a.b.a.m	ENSGT01030000234555.a.a.b.a.b.a.n	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000163431	ENSGT00390000014226
Phasianidae	ANCESTRAL SPECIES	22	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000164058	ENSGT01030000234555.a.a.b.a.b.a.n	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000163431	ENSGT00390000014226	ENSGT00940000160607
Japanese quail	MODERN SPECIES	18	TRIM33 (ENSCJPG00005017361)	SYT6 (ENSCJPG00005017360)	OLFML3 (ENSCJPG00005017359)	HIPK1 (ENSCJPG00005017327)	DCLRE1B (ENSCJPG00005017326)	AP4B1 (ENSCJPG00005017325)	BCL2L15 (ENSCJPG00005017324)	ENSCJPG00005017323	RSBN1 (ENSCJPG00005017322)	PHTF1 (ENSCJPG00005016848)	MAGI3 (ENSCJPG00005016688)	LRIG2 (ENSCJPG00005016678)	SLC16A1 (ENSCJPG00005016677)	TAFA3 (ENSCJPG00005016676)	PPM1J (ENSCJPG00005016675)	RHOC (ENSCJPG00005016674) ##22	MOV10 (ENSCJPG00005016673)	CAPZA1 (ENSCJPG00005016672)	ST7L (ENSCJPG00005016671)	WNT2B (ENSCJPG00005016670)	CTTNBP2NL (ENSCJPG00005016669)	KCND3 (ENSCJPG00005016667)	DDX20 (ENSCJPG00005016666)	INKA2 (ENSCJPG00005016665)	ENSCJPG00005016664	ADORA3 (ENSCJPG00005016663)	ATP5PB (ENSCJPG00005016662)	WDR77 (ENSCJPG00005016661)	ENSCJPG00005016660	GUCA1ANB (ENSCJPG00005016659)	GUCA1A (ENSCJPG00005016658)
Phasianidae_b	ANCESTRAL SPECIES	22	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000164058	ENSGT01030000234555.a.a.b.a.b.a.n	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000163431	ENSGT00390000014226	ENSGT00940000160607
Chicken	MODERN SPECIES	18	SYT6 (ENSGALG00010025434)	OLFML3 (ENSGALG00010025357)	HIPK1 (ENSGALG00010025348)	DCLRE1B (ENSGALG00010027405)	AP4B1 (ENSGALG00010027402)	BCL2L15 (ENSGALG00010027395)	PTPN22 (ENSGALG00010027911)	RSBN1 (ENSGALG00010027894)	PHTF1 (ENSGALG00010027256)	MAGI3 (ENSGALG00010027252)	LRIG2 (ENSGALG00010027245)	ENSGALG00010027862	SLC16A1 (ENSGALG00010024452)	TAFA3 (ENSGALG00010027257)	PPM1J (ENSGALG00010027516)	RHOC (ENSGALG00010027510) ##22	MOV10 (ENSGALG00010027499)	CAPZA1 (ENSGALG00010027457)	ST7L (ENSGALG00010027438)	WNT2B (ENSGALG00010027417)	CTTNBP2NL (ENSGALG00010027284)	KCND3 (ENSGALG00010027277)	DDX20 (ENSGALG00010027272)	INKA2 (ENSGALG00010027271)	RAP1A (ENSGALG00010025245)	ADORA3 (ENSGALG00010027577)	ATP5PB (ENSGALG00010027569)	WDR77 (ENSGALG00010027563)	C6orf132 (ENSGALG00010027557)	GUCA1ANB (ENSGALG00010027550)	GUCA1A (ENSGALG00010027535)
Turkey	MODERN SPECIES	20	ENSMGAG00000004503	ENSMGAG00000004523	ENSMGAG00000017313	ENSMGAG00000004569	ENSMGAG00000004533	ENSMGAG00000004475	RAP1A (ENSMGAG00000004577)	INKA2 (ENSMGAG00000004622)	ENSMGAG00000004624	ENSMGAG00000004690	CTTNBP2NL (ENSMGAG00000004774)	ENSMGAG00000004810	WNT2B (ENSMGAG00000022187)	ENSMGAG00000004879	CAPZA1 (ENSMGAG00000004831)	RHOC (ENSMGAG00000004926) ##22	ENSMGAG00000004965	ENSMGAG00000004999	ENSMGAG00000005120	LRIG2 (ENSMGAG00000004738)	ENSMGAG00000005078	ENSMGAG00000005012	RSBN1 (ENSMGAG00000005145)	PTPN22 (ENSMGAG00000005570)	ENSMGAG00000005540	ENSMGAG00000005551	DCLRE1B (ENSMGAG00000015672)	HIPK1 (ENSMGAG00000005437)	ENSMGAG00000016722	ENSMGAG00000017347	ENSMGAG00000006890
Anatidae	ANCESTRAL SPECIES	42	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000164058	ENSGT01030000234555.a.a.b.a.b.a.m	ENSGT01030000234555.a.a.b.a.b.a.n	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000163431	ENSGT00390000014226
Pink-footed goose	MODERN SPECIES	129													ENSABRG00000007810	TAFA3 (ENSABRG00000007811)	PPM1J (ENSABRG00000007816)	RHOC (ENSABRG00000007834) ##22	MOV10 (ENSABRG00000007887)	CAPZA1 (ENSABRG00000007917)	ST7L (ENSABRG00000008528)	WNT2B (ENSABRG00000008544)	CTTNBP2NL (ENSABRG00000008563)	KCND3 (ENSABRG00000008587)	DDX20 (ENSABRG00000008596)	INKA2 (ENSABRG00000008604)	ENSABRG00000008615	ENSABRG00000008626	ENSABRG00000008629	ATP5PB (ENSABRG00000008638)	WDR77 (ENSABRG00000008653)	C6orf132 (ENSABRG00000008666)	GUCA1ANB (ENSABRG00000008678)
Neognathae_b	ANCESTRAL SPECIES	24	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00990000204522	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000164058	ENSGT01030000234555.a.a.b.a.b.a.m	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a.n	ENSGT00390000001958	ENSGT00390000010711
Passeriformes	ANCESTRAL SPECIES	21											ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000164058	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a.n	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000163431
Great tit	MODERN SPECIES	19											MAGI3 (ENSPMJG00000017600)	LRIG2 (ENSPMJG00000017596)	SLC16A1 (ENSPMJG00000017594)	TAFA3 (ENSPMJG00000017591)	PPM1J (ENSPMJG00000017589)	RHOC (ENSPMJG00000017585) ##22	MOV10 (ENSPMJG00000017584)	CAPZA1 (ENSPMJG00000017583)	ST7L (ENSPMJG00000017582)	WNT2B (ENSPMJG00000017581)	CTTNBP2NL (ENSPMJG00000017580)	KCND3 (ENSPMJG00000017578)	DDX20 (ENSPMJG00000017577)	INKA2 (ENSPMJG00000017576)	RAP1A (ENSPMJG00000017575)	ADORA3 (ENSPMJG00000017574)	ATP5PB (ENSPMJG00000017573)	WDR77 (ENSPMJG00000017572)	C6orf132 (ENSPMJG00000017571)	ENSPMJG00000017570	GUCA1A (ENSPMJG00000017569)
Passeriformes_d	ANCESTRAL SPECIES	21											ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000164058	ENSGT01030000234555.a.a.b.a.b.a.n	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000163431	ENSGT00960000189479
Passeriformes_g	ANCESTRAL SPECIES	24											ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000164058	ENSGT01030000234555.a.a.b.a.b.a.n	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000163431	ENSGT00960000189479
Passeroidea	ANCESTRAL SPECIES	24											ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000164058	ENSGT01030000234555.a.a.b.a.b.a.n	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000163431	ENSGT00960000189479
Common canary	MODERN SPECIES	62											MAGI3 (ENSSCAG00000015302)	LRIG2 (ENSSCAG00000015466)	SLC16A1 (ENSSCAG00000015486)	TAFA3 (ENSSCAG00000015489)	PPM1J (ENSSCAG00000015498)	RHOC (ENSSCAG00000015520) ##22	MOV10 (ENSSCAG00000015526)	CAPZA1 (ENSSCAG00000015533)	ST7L (ENSSCAG00000015539)	WNT2B (ENSSCAG00000015547)	CTTNBP2NL (ENSSCAG00000015553)	KCND3 (ENSSCAG00000015558)	ENSSCAG00000015561	DDX20 (ENSSCAG00000015565)	INKA2 (ENSSCAG00000015572)	ENSSCAG00000015574	ADORA3 (ENSSCAG00000015580)	ATP5PB (ENSSCAG00000015584)	WDR77 (ENSSCAG00000015588)	ENSSCAG00000015597	GUCA1A (ENSSCAG00000015601)
Medium ground finch	MODERN SPECIES	265											MAGI3 (ENSGFOG00000013383)	LRIG2 (ENSGFOG00000013375)	SLC16A1 (ENSGFOG00000013369)	TAFA3 (ENSGFOG00000013365)	PPM1J (ENSGFOG00000013355)	RHOC (ENSGFOG00000013350) ##22	MOV10 (ENSGFOG00000013346)	CAPZA1 (ENSGFOG00000013340)	ST7L (ENSGFOG00000012831)	WNT2B (ENSGFOG00000012809)	CTTNBP2NL (ENSGFOG00000012807)	KCND3 (ENSGFOG00000012804)	DDX20 (ENSGFOG00000012801)	INKA2 (ENSGFOG00000012799)	ENSGFOG00000012796	ADORA3 (ENSGFOG00000012791)	ATP5PB (ENSGFOG00000012785)	WDR77 (ENSGFOG00000012780)	GUCA1A (ENSGFOG00000012776)	GUCA1B (ENSGFOG00000012771)	IRF6 (ENSGFOG00000012769)
Flycatcher	MODERN SPECIES	18											MAGI3 (ENSFALG00000000766)	LRIG2 (ENSFALG00000000761)	SLC16A1 (ENSFALG00000024820)	TAFA3 (ENSFALG00000027415)	PPM1J (ENSFALG00000000741)	RHOC (ENSFALG00000026186) ##22	MOV10 (ENSFALG00000000722)	CAPZA1 (ENSFALG00000000695)	ST7L (ENSFALG00000000682)	WNT2B (ENSFALG00000000672)	CTTNBP2NL (ENSFALG00000000670)	KCND3 (ENSFALG00000000668)	ENSFALG00000023135	DDX20 (ENSFALG00000000666)	ENSFALG00000024242	ENSFALG00000025619	ADORA3 (ENSFALG00000025248)	DSTYK (ENSFALG00000000621)	WDR77 (ENSFALG00000000642)	TMCC2 (ENSFALG00000000625)	KLHDC8A (ENSFALG00000000617)
Neognathae_c	ANCESTRAL SPECIES	27	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00990000204522	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000164058	ENSGT01030000234555.a.a.b.a.b.a.m	ENSGT01030000234555.a.a.b.a.b.a.n	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000163431	ENSGT00390000014226
Golden eagle	MODERN SPECIES	16	SYT6 (ENSACCG00020010651)	OLFML3 (ENSACCG00020010659)	HIPK1 (ENSACCG00020010684)	DCLRE1B (ENSACCG00020010713)	AP4B1 (ENSACCG00020010726)	BCL2L15 (ENSACCG00020010737)	ENSACCG00020010753	ENSACCG00020010773	RSBN1 (ENSACCG00020010821)	PHTF1 (ENSACCG00020010878)	MAGI3 (ENSACCG00020010934)	LRIG2 (ENSACCG00020010968)	SLC16A1 (ENSACCG00020010983)	TAFA3 (ENSACCG00020010992)	PPM1J (ENSACCG00020011003)	RHOC (ENSACCG00020011542) ##22	MOV10 (ENSACCG00020011568)	CAPZA1 (ENSACCG00020011605)	ST7L (ENSACCG00020011647)	WNT2B (ENSACCG00020011689)	CTTNBP2NL (ENSACCG00020011726)	KCND3 (ENSACCG00020011750)	DDX20 (ENSACCG00020011778)	INKA2 (ENSACCG00020011819)	ENSACCG00020011862	ENSACCG00020011892	ENSACCG00020011950	ATP5PB (ENSACCG00020011976)	WDR77 (ENSACCG00020012012)	C6orf132 (ENSACCG00020012073)	GUCA1ANB (ENSACCG00020012095)
Kakapo	MODERN SPECIES	30	ENSSHBG00005008319	KIF21B (ENSSHBG00005008301)	CACNA1S (ENSSHBG00005006434)	OLFML3 (ENSSHBG00005006051)	HIPK1 (ENSSHBG00005005909)	DCLRE1B (ENSSHBG00005005849)	AP4B1 (ENSSHBG00005001005)	ENSSHBG00005001004	RSBN1 (ENSSHBG00005001001)	PHTF1 (ENSSHBG00005014943)	MAGI3 (ENSSHBG00005014772)	LRIG2 (ENSSHBG00005014732)	SLC16A1 (ENSSHBG00005014725)	TAFA3 (ENSSHBG00005014713)	PPM1J (ENSSHBG00005014694)	RHOC (ENSSHBG00005014686) ##22	MOV10 (ENSSHBG00005014656)	CAPZA1 (ENSSHBG00005014643)	ST7L (ENSSHBG00005014637)	WNT2B (ENSSHBG00005014626)	CTTNBP2NL (ENSSHBG00005014616)	KCND3 (ENSSHBG00005014608)	DDX20 (ENSSHBG00005014590)	INKA2 (ENSSHBG00005014581)	ENSSHBG00005014571	ENSSHBG00005014557	SNRPC (ENSSHBG00005014545)	ILRUN (ENSSHBG00005014536)	SPDEF (ENSSHBG00005014525)	PACSIN1 (ENSSHBG00005014517)	RPS10 (ENSSHBG00005014508)
Australian saltwater crocodile	MODERN SPECIES	53	OLFML3 (ENSCPRG00005014989)	HIPK1 (ENSCPRG00005014993)	DCLRE1B (ENSCPRG00005015002)	AP4B1 (ENSCPRG00005015006)	BCL2L15 (ENSCPRG00005015013)	ENSCPRG00005015015	ENSCPRG00005015020	ENSCPRG00005015024	RSBN1 (ENSCPRG00005015033)	ENSCPRG00005015045	MAGI3 (ENSCPRG00005015161)	LRIG2 (ENSCPRG00005015418)	SLC16A1 (ENSCPRG00005015423)	TAFA3 (ENSCPRG00005015432)	PPM1J (ENSCPRG00005015439)	RHOC (ENSCPRG00005015463) ##22	MOV10 (ENSCPRG00005015465)	CAPZA1 (ENSCPRG00005015473)	ENSCPRG00005015479	ST7L (ENSCPRG00005015520)	WNT2B (ENSCPRG00005015805)	CTTNBP2NL (ENSCPRG00005015808)	KCND3 (ENSCPRG00005015817)	DDX20 (ENSCPRG00005015827)	INKA2 (ENSCPRG00005015828)	ENSCPRG00005015836	ENSCPRG00005015841	ENSCPRG00005015844	ATP5PB (ENSCPRG00005015850)	WDR77 (ENSCPRG00005015852)	ENSCPRG00005015853
Cryptodira	ANCESTRAL SPECIES	27	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00950000182977.A.h	ENSGT01000000218223	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000163431	ENSGT00390000014226	ENSGT00940000160607
Chinese turtle	MODERN SPECIES	740	TRIM33 (ENSPSIG00000003760)	SYT6 (ENSPSIG00000003752)	OLFML3 (ENSPSIG00000003746)	DCLRE1B (ENSPSIG00000003743)	AP4B1 (ENSPSIG00000003735)	ENSPSIG00000003734	HIPK1 (ENSPSIG00000003724)	RSBN1 (ENSPSIG00000003721)	PHTF1 (ENSPSIG00000003712)	MAGI3 (ENSPSIG00000003709)	ENSPSIG00000001218	LRIG2 (ENSPSIG00000003702)	SLC16A1 (ENSPSIG00000003691)	TAFA3 (ENSPSIG00000003688)	PPM1J (ENSPSIG00000003680)	RHOC (ENSPSIG00000003676) ##22	MOV10 (ENSPSIG00000003671)	CAPZA1 (ENSPSIG00000003661)	ST7L (ENSPSIG00000003658)	WNT2B (ENSPSIG00000003656)	CTTNBP2NL (ENSPSIG00000003650)	ENSPSIG00000003647	ENSPSIG00000003643	DDX20 (ENSPSIG00000003636)	INKA2 (ENSPSIG00000003634)	RAP1A (ENSPSIG00000003633)	ADORA3 (ENSPSIG00000003631)	ATP5PB (ENSPSIG00000003628)	WDR77 (ENSPSIG00000003624)	ENSPSIG00000001202	ENSPSIG00000003623
Mammalia	ANCESTRAL SPECIES	80	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000163431	ENSGT00390000014226
Theria	ANCESTRAL SPECIES	3	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Eutheria	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711
Eulipotyphla	ANCESTRAL SPECIES	307														ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024
Hedgehog	MODERN SPECIES	4979														ENSEEUG00000011752	ENSEEUG00000011667	RHOC (ENSEEUG00000011529) ##22	ENSEEUG00000011278
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Equus	ANCESTRAL SPECIES	3	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00390000007084.d	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162989.c
Donkey	MODERN SPECIES	7	OLFML3 (ENSEASG00005005573)	HIPK1 (ENSEASG00005005568)	DCLRE1B (ENSEASG00005029460)	AP4B1 (ENSEASG00005005561)	BCL2L15 (ENSEASG00005029753)	PTPN22 (ENSEASG00005005531)	RSBN1 (ENSEASG00005005523)	PHTF1 (ENSEASG00005005521)	MAGI3 (ENSEASG00005005514)	ENSEASG00005005507	LRIG2 (ENSEASG00005005502)	ENSEASG00005037410	ENSEASG00005034504	TAFA3 (ENSEASG00005005497)	PPM1J (ENSEASG00005005493)	RHOC (ENSEASG00005005492) ##22	MOV10 (ENSEASG00005005486)	CAPZA1 (ENSEASG00005005479)	ST7L (ENSEASG00005005471)	WNT2B (ENSEASG00005005467)	CTTNBP2NL (ENSEASG00005005465)	KCND3 (ENSEASG00005005457)	DDX20 (ENSEASG00005005454)	INKA2 (ENSEASG00005029164)	RAP1A (ENSEASG00005005448)	TMIGD3 (ENSEASG00005005446)	C1orf162 (ENSEASG00005031971)	ATP5PB (ENSEASG00005005443)	WDR77 (ENSEASG00005005441)	ENSEASG00005005431	PIFO (ENSEASG00005005425)
Horse	MODERN SPECIES	26	OLFML3 (ENSECAG00000013439)	HIPK1 (ENSECAG00000015193)	DCLRE1B (ENSECAG00000021685)	AP4B1 (ENSECAG00000022112)	ENSECAG00000048631	PTPN22 (ENSECAG00000024298)	RSBN1 (ENSECAG00000008072)	PHTF1 (ENSECAG00000008416)	MAGI3 (ENSECAG00000012982)	ENSECAG00000037106	LRIG2 (ENSECAG00000018698)	SLC16A1 (ENSECAG00000021627)	ENSECAG00000047726	TAFA3 (ENSECAG00000005328)	PPM1J (ENSECAG00000007948)	RHOC (ENSECAG00000044625) ##22	MOV10 (ENSECAG00000011530)	CAPZA1 (ENSECAG00000016995)	ST7L (ENSECAG00000019081)	WNT2B (ENSECAG00000004705)	CTTNBP2NL (ENSECAG00000010817)	KCND3 (ENSECAG00000011594)	DDX20 (ENSECAG00000013565)	INKA2 (ENSECAG00000002928)	ENSECAG00000016434	ADORA3 (ENSECAG00000033327)	ENSECAG00000046756	ATP5PB (ENSECAG00000018599)	WDR77 (ENSECAG00000018629)	ENSECAG00000044272	PIFO (ENSECAG00000023736)
Chiroptera	ANCESTRAL SPECIES	38	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Microchiroptera	ANCESTRAL SPECIES	35	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Greater horseshoe bat	MODERN SPECIES	14	SYT6 (ENSRFEG00010015280)	OLFML3 (ENSRFEG00010015201)	HIPK1 (ENSRFEG00010014811)	DCLRE1B (ENSRFEG00010014716)	AP4B1 (ENSRFEG00010014570)	BCL2L15 (ENSRFEG00010014468)	PTPN22 (ENSRFEG00010014261)	RSBN1 (ENSRFEG00010014156)	PHTF1 (ENSRFEG00010013922)	MAGI3 (ENSRFEG00010013783)	ENSRFEG00010013698	LRIG2 (ENSRFEG00010013581)	ENSRFEG00010013514	TAFA3 (ENSRFEG00010013461)	PPM1J (ENSRFEG00010013269)	RHOC (ENSRFEG00010013211) ##22	MOV10 (ENSRFEG00010013132)	CAPZA1 (ENSRFEG00010013059)	WNT2B (ENSRFEG00010012963)	ST7L (ENSRFEG00010012674)	CTTNBP2NL (ENSRFEG00010012603)	KCND3 (ENSRFEG00010012538)	DDX20 (ENSRFEG00010012452)	INKA2 (ENSRFEG00010012415)	RAP1A (ENSRFEG00010012354)	TMIGD3 (ENSRFEG00010012229)	C1orf162 (ENSRFEG00010012182)	ENSRFEG00010012045	WDR77 (ENSRFEG00010011876)	ENSRFEG00010011822	PIFO (ENSRFEG00010011650)
Microbat	MODERN SPECIES	1038	SYT6 (ENSMLUG00000009931)	ENSMLUG00000022748	OLFML3 (ENSMLUG00000007520)	HIPK1 (ENSMLUG00000007488)	DCLRE1B (ENSMLUG00000007477)	ENSMLUG00000007458	BCL2L15 (ENSMLUG00000007445)	PTPN22 (ENSMLUG00000007430)	RSBN1 (ENSMLUG00000007416)	PHTF1 (ENSMLUG00000002367)	ENSMLUG00000002347	LRIG2 (ENSMLUG00000005456)	SLC16A1 (ENSMLUG00000005454)	TAFA3 (ENSMLUG00000009867)	PPM1J (ENSMLUG00000009847)	RHOC (ENSMLUG00000025586) ##22	MOV10 (ENSMLUG00000009815)	CAPZA1 (ENSMLUG00000009796)	ST7L (ENSMLUG00000009757)	WNT2B (ENSMLUG00000009754)	CTTNBP2NL (ENSMLUG00000009737)	KCND3 (ENSMLUG00000009699)	DDX20 (ENSMLUG00000009676)	INKA2 (ENSMLUG00000009665)	RAP1A (ENSMLUG00000010571)	ADORA3 (ENSMLUG00000027034)	ENSMLUG00000012427	ENSMLUG00000012417	WDR77 (ENSMLUG00000012412)	OVGP1 (ENSMLUG00000012407)	ENSMLUG00000012403
Megabat	MODERN SPECIES	629														TAFA3 (ENSPVAG00000002496)	PPM1J (ENSPVAG00000002493)	RHOC (ENSPVAG00000002488) ##22	MOV10 (ENSPVAG00000002477)	CAPZA1 (ENSPVAG00000002475)	ST7L (ENSPVAG00000002473)	WNT2B (ENSPVAG00000002472)
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711
Caniformia	ANCESTRAL SPECIES	2	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Ursidae	ANCESTRAL SPECIES	32	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.h	ENSGT00390000010711	ENSGT00940000162223
Ursus	ANCESTRAL SPECIES	70													ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.h	ENSGT00390000010711	ENSGT00940000162223.c
American black bear	MODERN SPECIES	379														TAFA3 (ENSUAMG00000006726)	PPM1J (ENSUAMG00000006724)	RHOC (ENSUAMG00000006721) ##22	MOV10 (ENSUAMG00000006720)	CAPZA1 (ENSUAMG00000006717)	ST7L (ENSUAMG00000006715)	WNT2B (ENSUAMG00000006712)	CTTNBP2NL (ENSUAMG00000006710)
Polar bear	MODERN SPECIES	255													ENSUMAG00000015670	TAFA3 (ENSUMAG00000015665)	PPM1J (ENSUMAG00000015659)	RHOC (ENSUMAG00000015654) ##22	MOV10 (ENSUMAG00000014721)	CAPZA1 (ENSUMAG00000014563)	ST7L (ENSUMAG00000014015)	WNT2B (ENSUMAG00000013949)	CTTNBP2NL (ENSUMAG00000013946)	KCND3 (ENSUMAG00000013918)	DDX20 (ENSUMAG00000013897)	INKA2 (ENSUMAG00000013892)	RAP1A (ENSUMAG00000013890)	ADORA3 (ENSUMAG00000013887)	ENSUMAG00000013881	C1orf162 (ENSUMAG00000013876)	ATP5PB (ENSUMAG00000013875)	WDR77 (ENSUMAG00000013868)	ENSUMAG00000013859
Giant Panda	MODERN SPECIES	11	TRIM33 (ENSAMEG00000000663)	SYT6 (ENSAMEG00000000702)	OLFML3 (ENSAMEG00000003210)	HIPK1 (ENSAMEG00000003215)	AP4B1 (ENSAMEG00000003279)	BCL2L15 (ENSAMEG00000003302)	PTPN22 (ENSAMEG00000003307)	RSBN1 (ENSAMEG00000003339)	PHTF1 (ENSAMEG00000003343)	MAGI3 (ENSAMEG00000003390)	LRIG2 (ENSAMEG00000003413)	ENSAMEG00000003449	ENSAMEG00000028802	TAFA3 (ENSAMEG00000031120)	PPM1J (ENSAMEG00000003477)	RHOC (ENSAMEG00000003493) ##22	MOV10 (ENSAMEG00000003505)	CAPZA1 (ENSAMEG00000003570)	WNT2B (ENSAMEG00000003598)	ST7L (ENSAMEG00000003590)	CTTNBP2NL (ENSAMEG00000003620)	KCND3 (ENSAMEG00000003632)	DDX20 (ENSAMEG00000005344)	INKA2 (ENSAMEG00000005378)	RAP1A (ENSAMEG00000005384)	TMIGD3 (ENSAMEG00000005422)	C1orf162 (ENSAMEG00000005430)	ATP5PB (ENSAMEG00000026613)	WDR77 (ENSAMEG00000005454)	PGB2 (ENSAMEG00000005567)	ENSAMEG00000029447
Mustelinae	ANCESTRAL SPECIES	47	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
American mink	MODERN SPECIES	366														TAFA3 (ENSNVIG00000001972)	PPM1J (ENSNVIG00000001869)	RHOC (ENSNVIG00000001815) ##22	MOV10 (ENSNVIG00000001682)	CAPZA1 (ENSNVIG00000001623)	ST7L (ENSNVIG00000001532)	WNT2B (ENSNVIG00000001502)	CTTNBP2NL (ENSNVIG00000001459)	KCND3 (ENSNVIG00000001280)	DDX20 (ENSNVIG00000001179)	INKA2 (ENSNVIG00000001144)	RAP1A (ENSNVIG00000001103)	ADORA3 (ENSNVIG00000001050)	ENSNVIG00000001026	C1orf162 (ENSNVIG00000001003)	ATP5PB (ENSNVIG00000000953)	MEP50 (ENSNVIG00000000841)	ENSNVIG00000000706
Ferret	MODERN SPECIES	312	SYT6 (ENSMPUG00000005408)	OLFML3 (ENSMPUG00000005367)	HIPK1 (ENSMPUG00000005355)	DCLRE1B (ENSMPUG00000005347)	AP4B1 (ENSMPUG00000005335)	BCL2L15 (ENSMPUG00000005322)	PTPN22 (ENSMPUG00000005305)	RSBN1 (ENSMPUG00000005293)	PHTF1 (ENSMPUG00000005281)	MAGI3 (ENSMPUG00000005267)	LRIG2 (ENSMPUG00000005254)	ENSMPUG00000005249	ENSMPUG00000005243	TAFA3 (ENSMPUG00000005231)	PPM1J (ENSMPUG00000005170)	RHOC (ENSMPUG00000005141) ##22	MOV10 (ENSMPUG00000004985)	CAPZA1 (ENSMPUG00000004977)	WNT2B (ENSMPUG00000004969)	ST7L (ENSMPUG00000004958)	CTTNBP2NL (ENSMPUG00000004952)	KCND3 (ENSMPUG00000004931)	DDX20 (ENSMPUG00000004921)	INKA2 (ENSMPUG00000004912)	RAP1A (ENSMPUG00000004842)	ADORA3 (ENSMPUG00000004839)	ENSMPUG00000004819	ATP5PB (ENSMPUG00000004772)	WDR77 (ENSMPUG00000004756)	OVGP1 (ENSMPUG00000004475)	ENSMPUG00000004336
Canidae	ANCESTRAL SPECIES	18	ENSGT00730000111554	ENSGT00940000176100.e	ENSGT00950000183312	ENSGT00780000122937	ENSGT00440000039991	ENSGT00940000164168	ENSGT00940000163248.k	ENSGT00940000164092	ENSGT00940000163248.l	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b.a	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00390000015005	ENSGT00390000001958.e	ENSGT00390000010711.i	ENSGT00940000162223	ENSGT00940000163644.g.a
Red fox	MODERN SPECIES	180	CUNH1orf68 (ENSVVUG00000015721)	KPRP (ENSVVUG00000015725)	ENSVVUG00000015727	LCE7A (ENSVVUG00000015738)	ENSVVUG00000015741	IVL (ENSVVUG00000015746)	ENSVVUG00000015758	ENSVVUG00000015763	ENSVVUG00000015768	MAGI3 (ENSVVUG00000015809)	LRIG2 (ENSVVUG00000015931)	ENSVVUG00000015991	ENSVVUG00000015995	TAFA3 (ENSVVUG00000016005)	PPM1J (ENSVVUG00000016017)	RHOC (ENSVVUG00000016051) ##22	MOV10 (ENSVVUG00000016071)	CAPZA1 (ENSVVUG00000016105)	ST7L (ENSVVUG00000016179)	WNT2B (ENSVVUG00000016215)	CTTNBP2NL (ENSVVUG00000016219)	KCND3 (ENSVVUG00000016230)	DDX20 (ENSVVUG00000016236)	INKA2 (ENSVVUG00000016243)	RAP1A (ENSVVUG00000016250)	ADORA3 (ENSVVUG00000016258)	OVGP1 (ENSVVUG00000016278)	ENSVVUG00000016287	ENSVVUG00000016305
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00730000111580	ENSGT00730000111554	ENSGT00940000176100.e	ENSGT00950000183312	ENSGT00780000122937	ENSGT01050000246051	ENSGT00940000164168	ENSGT00940000163248.k	ENSGT00940000164092	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b.a	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00390000009786.u.a.b.a	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00390000015005	ENSGT00390000010711.i	ENSGT00940000162223	ENSGT00940000163644.g.a.a
Dingo	DUPLICATION
Dingo	MODERN SPECIES	343	ENSCAFG00020017482	SNAI1 (ENSCAFG00020017479)	RNF114 (ENSCAFG00020017476)	SPATA2 (ENSCAFG00020017474)	ENSCAFG00020017473	SLC9A8 (ENSCAFG00020017467)	B4GALT5 (ENSCAFG00020017452)	PTGIS (ENSCAFG00020017431)	KCNB1 (ENSCAFG00020017422)	ZNFX1 (ENSCAFG00020017272)	DDX27 (ENSCAFG00020017143)	STAU1 (ENSCAFG00020017123)	CSE1L (ENSCAFG00020016114)	ARFGEF2 (ENSCAFG00020016077)	PREX1 (ENSCAFG00020015426)	ENSCAFG00020015330 ##22	SULF2 (ENSCAFG00020015312)	NCOA3 (ENSCAFG00020015201)	ZMYND8 (ENSCAFG00020015176)	EYA2 (ENSCAFG00020015165)	SLC2A10 (ENSCAFG00020015162)	TP53RK (ENSCAFG00020015159)	SLC13A3 (ENSCAFG00020015143)	OCSTAMP (ENSCAFG00020015127)	ENSCAFG00020015117	ENSCAFG00020015115	ENSCAFG00020015110	ELMO2 (ENSCAFG00020014412)	SLC35C2 (ENSCAFG00020014391)	CDH22 (ENSCAFG00020014375)	CD40 (ENSCAFG00020014372)
Dingo	MODERN SPECIES	223	ENSCAFG00020009418	C1orf68 (ENSCAFG00020009403)	KPRP (ENSCAFG00020009402)	ENSCAFG00020009400	LCE7A (ENSCAFG00020009396)	ENSCAFG00020009395	ENSCAFG00020009390	ENSCAFG00020009355	ENSCAFG00020009346	MAGI3 (ENSCAFG00020008708)	LRIG2 (ENSCAFG00020008658)	ENSCAFG00020008635	ENSCAFG00020008611	TAFA3 (ENSCAFG00020008583)	PPM1J (ENSCAFG00020008575)	RHOC (ENSCAFG00020008569) ##22	MOV10 (ENSCAFG00020008556)	CAPZA1 (ENSCAFG00020008507)	WNT2B (ENSCAFG00020008500)	CTTNBP2NL (ENSCAFG00020008495)	ENSCAFG00020008492	KCND3 (ENSCAFG00020008441)	DDX20 (ENSCAFG00020008055)	INKA2 (ENSCAFG00020008030)	RAP1A (ENSCAFG00020008027)	ADORA3 (ENSCAFG00020007993)	ENSCAFG00020007983	OVGP1 (ENSCAFG00020007980)	ENSCAFG00020007955
Dog	DUPLICATION
Dog	MODERN SPECIES	16	RNF114 (ENSCAFG00845025848)	SPATA2 (ENSCAFG00845025815)	IL29L (ENSCAFG00845025792)	SLC9A8 (ENSCAFG00845025485)	ENSCAFG00845025394	B4GALT5 (ENSCAFG00845025327)	PTGIS (ENSCAFG00845025000)	KCNB1 (ENSCAFG00845024922)	ZNFX1 (ENSCAFG00845024687)	DDX27 (ENSCAFG00845024443)	STAU1 (ENSCAFG00845024157)	CSE1L (ENSCAFG00845023846)	ARFGEF2 (ENSCAFG00845023652)	PREX1 (ENSCAFG00845023092)	ENSCAFG00845022903	ENSCAFG00845022869 ##22	SULF2 (ENSCAFG00845022596)	NCOA3 (ENSCAFG00845022283)	ZMYND8 (ENSCAFG00845020959)	EYA2 (ENSCAFG00845020227)	SLC2A10 (ENSCAFG00845019723)	TP53RK (ENSCAFG00845019676)	SLC13A3 (ENSCAFG00845019431)	OCSTAMP (ENSCAFG00845019351)	ENSCAFG00845019322	ENSCAFG00845019288	ENSCAFG00845019229	ELMO2 (ENSCAFG00845018858)	SLC35C2 (ENSCAFG00845018711)	CDH22 (ENSCAFG00845018625)	CD40 (ENSCAFG00845018444)
Dog	MODERN SPECIES	8	LCE7A (ENSCAFG00845026322)	SMCP (ENSCAFG00845026447)	ENSCAFG00845026511	ENSCAFG00845026540	ENSCAFG00845026586	ENSCAFG00845026646	ENSCAFG00845026661	PRR9 (ENSCAFG00845026679)	ENSCAFG00845005843	ENSCAFG00845005870	MAGI3 (ENSCAFG00845005973)	LRIG2 (ENSCAFG00845006193)	ENSCAFG00845006291	TAFA3 (ENSCAFG00845006369)	PPM1J (ENSCAFG00845006424)	RHOC (ENSCAFG00845006667) ##22	MOV10 (ENSCAFG00845006911)	CAPZA1 (ENSCAFG00845006727)	ST7L (ENSCAFG00845007407)	WNT2B (ENSCAFG00845007687)	CTTNBP2NL (ENSCAFG00845007745)	ENSCAFG00845007793	KCND3 (ENSCAFG00845008017)	DDX20 (ENSCAFG00845008144)	INKA2 (ENSCAFG00845008216)	RAP1A (ENSCAFG00845008254)	ADORA3 (ENSCAFG00845008429)	ENSCAFG00845008469	ENSCAFG00845008533	ENSCAFG00845008615	ENSCAFG00845008673
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00510000047760.k.a	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.c
Panthera	ANCESTRAL SPECIES	4	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00510000047760.k.a	ENSGT00940000155343	ENSGT00940000169090	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.c
Tiger	MODERN SPECIES	81	SYT6 (ENSPTIG00000012950)	OLFML3 (ENSPTIG00000014141)	HIPK1 (ENSPTIG00000015933)	DCLRE1B (ENSPTIG00000007479)	AP4B1 (ENSPTIG00000008022)	BCL2L15 (ENSPTIG00000010775)	ENSPTIG00000011661	RSBN1 (ENSPTIG00000012973)	PHTF1 (ENSPTIG00000013775)	MAGI3 (ENSPTIG00000021471)	LRIG2 (ENSPTIG00000009001)	ENSPTIG00000009769	ENSPTIG00000010945	TAFA3 (ENSPTIG00000013385)	PPM1J (ENSPTIG00000013710)	RHOC (ENSPTIG00000014819) ##22	MOV10 (ENSPTIG00000016249)	CAPZA1 (ENSPTIG00000003403)	ST7L (ENSPTIG00000005238)	WNT2B (ENSPTIG00000019917)	CTTNBP2NL (ENSPTIG00000021251)	KCND3 (ENSPTIG00000021413)	ENSPTIG00000021906	ENSPTIG00000021955	INKA2 (ENSPTIG00000022035)	RAP1A (ENSPTIG00000022040)	ENSPTIG00000022060	ADORA3 (ENSPTIG00000022080)	C1orf162 (ENSPTIG00000022095)	ATP5PB (ENSPTIG00000022106)	WDR77 (ENSPTIG00000003575)
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00510000047760.k.a	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.c	ENSGT00390000010711
lion	MODERN SPECIES	8	SYT6 (ENSPLOG00000017004)	OLFML3 (ENSPLOG00000017170)	HIPK1 (ENSPLOG00000017319)	DCLRE1B (ENSPLOG00000017828)	AP4B1 (ENSPLOG00000017914)	BCL2L15 (ENSPLOG00000018045)	PTPN22 (ENSPLOG00000018355)	RSBN1 (ENSPLOG00000019230)	PHTF1 (ENSPLOG00000019325)	MAGI3 (ENSPLOG00000019634)	LRIG2 (ENSPLOG00000019954)	ENSPLOG00000020002	ENSPLOG00000020035	TAFA3 (ENSPLOG00000020057)	PPM1J (ENSPLOG00000020096)	RHOC (ENSPLOG00000020186) ##22	MOV10 (ENSPLOG00000020222)	ENSPLOG00000020394	ST7L (ENSPLOG00000020474)	WNT2B (ENSPLOG00000020600)	CTTNBP2NL (ENSPLOG00000020641)	ENSPLOG00000020663	KCND3 (ENSPLOG00000020694)	DDX20 (ENSPLOG00000020749)	INKA2 (ENSPLOG00000004808)	RAP1A (ENSPLOG00000004823)	ADORA3 (ENSPLOG00000004840)	ENSPLOG00000004854	ATP5PB (ENSPLOG00000004879)	WDR77 (ENSPLOG00000004899)	OVGP1 (ENSPLOG00000004911)
leopard	MODERN SPECIES	31	SYT6 (ENSPPRG00000014396)	OLFML3 (ENSPPRG00000017719)	HIPK1 (ENSPPRG00000003595)	DCLRE1B (ENSPPRG00000004410)	AP4B1 (ENSPPRG00000005145)	BCL2L15 (ENSPPRG00000005485)	ENSPPRG00000006556	RSBN1 (ENSPPRG00000008959)	PHTF1 (ENSPPRG00000013575)	MAGI3 (ENSPPRG00000023059)	LRIG2 (ENSPPRG00000000185)	ENSPPRG00000000446	ENSPPRG00000001627	TAFA3 (ENSPPRG00000002023)	PPM1J (ENSPPRG00000002873)	RHOC (ENSPPRG00000003991) ##22	MOV10 (ENSPPRG00000007950)	CAPZA1 (ENSPPRG00000009375)	ST7L (ENSPPRG00000014650)	WNT2B (ENSPPRG00000016238)	CTTNBP2NL (ENSPPRG00000016873)	ENSPPRG00000018976	KCND3 (ENSPPRG00000023105)	DDX20 (ENSPPRG00000022979)	INKA2 (ENSPPRG00000000290)	RAP1A (ENSPPRG00000000474)	ADORA3 (ENSPPRG00000001196)	ENSPPRG00000001496	ENSPPRG00000001921	WDR77 (ENSPPRG00000002294)	OVGP1 (ENSPPRG00000002990)
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a	ENSGT00390000010711	ENSGT00940000162223
Suina	ANCESTRAL SPECIES	32	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a	ENSGT00390000010711	ENSGT00940000162223	ENSGT00940000163644
Chacoan peccary	MODERN SPECIES	215	SYT6 (ENSCWAG00000002747)	OLFML3 (ENSCWAG00000002787)	HIPK1 (ENSCWAG00000002810)	DCLRE1B (ENSCWAG00000002892)	AP4B1 (ENSCWAG00000002910)	BCL2L15 (ENSCWAG00000002937)	PTPN22 (ENSCWAG00000003032)	RSBN1 (ENSCWAG00000003607)	PHTF1 (ENSCWAG00000003629)	MAGI3 (ENSCWAG00000003669)	LRIG2 (ENSCWAG00000003699)	ENSCWAG00000003720	ENSCWAG00000003745	TAFA3 (ENSCWAG00000003777)	PPM1J (ENSCWAG00000003807)	RHOC (ENSCWAG00000003888) ##22	MOV10 (ENSCWAG00000003921)	ENSCWAG00000003990	ST7L (ENSCWAG00000004057)	WNT2B (ENSCWAG00000004240)	CTTNBP2NL (ENSCWAG00000004286)	KCND3 (ENSCWAG00000004329)	DDX20 (ENSCWAG00000004423)	INKA2 (ENSCWAG00000004463)	RAP1A (ENSCWAG00000000076)	TMIGD3 (ENSCWAG00000000106)	ENSCWAG00000000148	ENSCWAG00000000188	WDR77 (ENSCWAG00000000242)	OVGP1 (ENSCWAG00000000271)	ENSCWAG00000000302
Pig	MODERN SPECIES	12	HIPK1 (ENSSSCG00000006760)	DCLRE1B (ENSSSCG00000006761)	AP4B1 (ENSSSCG00000006762)	BCL2L15 (ENSSSCG00000038970)	PTPN22 (ENSSSCG00000006764)	RSBN1 (ENSSSCG00000030154)	PHTF1 (ENSSSCG00000006766)	MAGI3 (ENSSSCG00000006767)	LRIG2 (ENSSSCG00000034581)	ENSSSCG00000063479	ENSSSCG00000006770	ENSSSCG00000006771	ENSSSCG00000060579	TAFA3 (ENSSSCG00000054939)	PPM1J (ENSSSCG00000006774)	RHOC (ENSSSCG00000006777) ##22	MOV10 (ENSSSCG00000006776)	CAPZA1 (ENSSSCG00000006775)	ST7L (ENSSSCG00000006779)	WNT2B (ENSSSCG00000006780)	CTTNBP2NL (ENSSSCG00000006781)	KCND3 (ENSSSCG00000026680)	DDX20 (ENSSSCG00000006783)	INKA2 (ENSSSCG00000036030)	RAP1A (ENSSSCG00000006785)	ENSSSCG00000033957	ADORA3 (ENSSSCG00000006788)	ENSSSCG00000025485	ATP5PB (ENSSSCG00000037772)	WDR77 (ENSSSCG00000006790)	OVGP1 (ENSSSCG00000006791)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a	ENSGT00390000010711	ENSGT00940000162223
Camelidae	ANCESTRAL SPECIES	29	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.o	ENSGT00390000010711	ENSGT00940000162223	ENSGT00390000001017
Arabian camel	MODERN SPECIES	35	SYT6 (ENSCDRG00005005375)	OLFML3 (ENSCDRG00005005451)	HIPK1 (ENSCDRG00005005505)	DCLRE1B (ENSCDRG00005005678)	AP4B1 (ENSCDRG00005005713)	ENSCDRG00005005752	PTPN22 (ENSCDRG00005005810)	RSBN1 (ENSCDRG00005005951)	PHTF1 (ENSCDRG00005006008)	MAGI3 (ENSCDRG00005006117)	LRIG2 (ENSCDRG00005000125)	ENSCDRG00005000217	ENSCDRG00005000249	TAFA3 (ENSCDRG00005000289)	PPM1J (ENSCDRG00005000330)	RHOC (ENSCDRG00005000382) ##22	MOV10 (ENSCDRG00005000430)	CAPZA1 (ENSCDRG00005000502)	ST7L (ENSCDRG00005000571)	WNT2B (ENSCDRG00005000739)	ENSCDRG00005000751	CTTNBP2NL (ENSCDRG00005000760)	KCND3 (ENSCDRG00005000784)	DDX20 (ENSCDRG00005000809)	INKA2 (ENSCDRG00005000834)	RAP1A (ENSCDRG00005000845)	ENSCDRG00005000857	TMIGD3 (ENSCDRG00005000901)	C1orf162 (ENSCDRG00005000936)	ENSCDRG00005000969	WDR77 (ENSCDRG00005001004)
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a	ENSGT00390000010711	ENSGT00940000162223
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a	ENSGT00390000010711	ENSGT00940000162223.a
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	12	SYT6 (ENSCHYG00000018604)	OLFML3 (ENSCHYG00000018919)	HIPK1 (ENSCHYG00000019014)	DCLRE1B (ENSCHYG00000019438)	AP4B1 (ENSCHYG00000019495)	BCL2L15 (ENSCHYG00000019696)	PTPN22 (ENSCHYG00000019743)	RSBN1 (ENSCHYG00000019892)	PHTF1 (ENSCHYG00000020034)	MAGI3 (ENSCHYG00000020532)	LRIG2 (ENSCHYG00000021183)	SLC16A1 (ENSCHYG00000021485)	ENSCHYG00000021598	ENSCHYG00000021662	PPM1J (ENSCHYG00000007120)	ENSCHYG00000007204 ##22	MOV10 (ENSCHYG00000007244)	ENSCHYG00000007380	CAPZA1 (ENSCHYG00000007396)	ST7L (ENSCHYG00000007457)	WNT2B (ENSCHYG00000007553)	CTTNBP2NL (ENSCHYG00000007594)	ENSCHYG00000007673	KCND3 (ENSCHYG00000007683)	DDX20 (ENSCHYG00000007715)	INKA2 (ENSCHYG00000007838)	RAP1A (ENSCHYG00000007851)	TMIGD3 (ENSCHYG00000007896)	C1orf162 (ENSCHYG00000007944)	ENSCHYG00000007985	WDR77 (ENSCHYG00000008032)
Yarkand deer	MODERN SPECIES	10	GK5 (ENSCHYG00000024077)	XRN1 (ENSCHYG00000023362)	ATR (ENSCHYG00000022692)	PLS1 (ENSCHYG00000022526)	TRPC1 (ENSCHYG00000022264)	PCOLCE2 (ENSCHYG00000022135)	PAQR9 (ENSCHYG00000022114)	U2SURP (ENSCHYG00000021811)	CHST2 (ENSCHYG00000021770)	SLC9A9 (ENSCHYG00000021601)	DIPK2A (ENSCHYG00000021529)	ENSCHYG00000021484	ENSCHYG00000021457	PLOD2 (ENSCHYG00000020638)	ENSCHYG00000020380	ENSCHYG00000020311 ##22
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a	ENSGT00390000010711	ENSGT00940000162223.a
Siberian musk deer	MODERN SPECIES	98	AP4B1 (ENSMMSG00000010901)	BCL2L15 (ENSMMSG00000010879)	ENSMMSG00000010867	PTPN22 (ENSMMSG00000010432)	RSBN1 (ENSMMSG00000010323)	ENSMMSG00000010306	PHTF1 (ENSMMSG00000010111)	MAGI3 (ENSMMSG00000010012)	LRIG2 (ENSMMSG00000009918)	ENSMMSG00000009834	ENSMMSG00000009820	ENSMMSG00000009792	ENSMMSG00000009760	TAFA3 (ENSMMSG00000009742)	PPM1J (ENSMMSG00000009611)	RHOC (ENSMMSG00000009557) ##22	MOV10 (ENSMMSG00000009432)	CAPZA1 (ENSMMSG00000009368)	ST7L (ENSMMSG00000009251)	WNT2B (ENSMMSG00000009189)	ENSMMSG00000009168	CTTNBP2NL (ENSMMSG00000009143)	ENSMMSG00000009132	KCND3 (ENSMMSG00000009020)	DDX20 (ENSMMSG00000008956)	INKA2 (ENSMMSG00000008934)	RAP1A (ENSMMSG00000008888)	ENSMMSG00000008856	TMIGD3 (ENSMMSG00000008818)	C1orf162 (ENSMMSG00000008788)	ENSMMSG00000008717
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a	ENSGT00390000010711	ENSGT00940000162223.a
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00390000008767.a.a.a.b.f.k.b	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a	ENSGT00390000010711	ENSGT00940000162223.a.a
Rambouillet Sheep	MODERN SPECIES		SYT6 (ENSOARG00020020593)	OLFML3 (ENSOARG00020020553)	HIPK1 (ENSOARG00020020282)	DCLRE1B (ENSOARG00020020246)	AP4B1 (ENSOARG00020020107)	BCL2L15 (ENSOARG00020020041)	ENSOARG00020019995	RSBN1 (ENSOARG00020016188)	PHTF1 (ENSOARG00020015861)	MAGI3 (ENSOARG00020015385)	ENSOARG00020015101	LRIG2 (ENSOARG00020014858)	SLC16A1 (ENSOARG00020014766)	TAFA3 (ENSOARG00020014692)	PPM1J (ENSOARG00020014499)	RHOC (ENSOARG00020014447) ##22	MOV10 (ENSOARG00020014075)	ENSOARG00020014006	WNT2B (ENSOARG00020013948)	ST7L (ENSOARG00020013173)	CTTNBP2NL (ENSOARG00020013081)	KCND3 (ENSOARG00020012910)	DDX20 (ENSOARG00020012777)	INKA2 (ENSOARG00020012728)	RAP1A (ENSOARG00020012648)	C1orf162 (ENSOARG00020012347)	ENSOARG00020012190	WDR77 (ENSOARG00020012024)	OVGP1 (ENSOARG00020011897)	ENSOARG00020011829	ENSOARG00020011762
Goat	MODERN SPECIES	22	SYT6 (ENSCHIG00000009583)	OLFML3 (ENSCHIG00000025685)	HIPK1 (ENSCHIG00000007296)	DCLRE1B (ENSCHIG00000023732)	AP4B1 (ENSCHIG00000022344)	BCL2L15 (ENSCHIG00000012371)	ENSCHIG00000006454	PTPN22 (ENSCHIG00000014330)	RSBN1 (ENSCHIG00000015190)	PHTF1 (ENSCHIG00000016393)	MAGI3 (ENSCHIG00000013616)	LRIG2 (ENSCHIG00000021380)	ENSCHIG00000016601	ENSCHIG00000018209	PPM1J (ENSCHIG00000013435)	RHOC (ENSCHIG00000024084) ##22	MOV10 (ENSCHIG00000022479)	CAPZA1 (ENSCHIG00000023138)	WNT2B (ENSCHIG00000009091)	ST7L (ENSCHIG00000025568)	ENSCHIG00000011859	CTTNBP2NL (ENSCHIG00000018320)	KCND3 (ENSCHIG00000019455)	DDX20 (ENSCHIG00000011219)	INKA2 (ENSCHIG00000025570)	RAP1A (ENSCHIG00000017703)	ADORA3 (ENSCHIG00000008671)	TMIGD3 (ENSCHIG00000010825)	C1orf162 (ENSCHIG00000025730)	ATP5PB (ENSCHIG00000012236)	WDR77 (ENSCHIG00000023007)
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00390000018741.i.a	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00390000006922.m.b.a.d	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00960000191271	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a	ENSGT00390000010711	ENSGT00940000162223.a	ENSGT00940000163644
American bison	DUPLICATION
American bison	MODERN SPECIES	3366	DCLRE1B (ENSBBBG00000001960)	AP4B1 (ENSBBBG00000010957)	BCL2L15 (ENSBBBG00000007163)	ENSBBBG00000010888	PTPN22 (ENSBBBG00000010840)	RSBN1 (ENSBBBG00000010658)	PHTF1 (ENSBBBG00000010604)	MAGI3 (ENSBBBG00000010439)	ENSBBBG00000010355	LRIG2 (ENSBBBG00000001792)	ENSBBBG00000010320	ENSBBBG00000007392	ENSBBBG00000010297	TAFA3 (ENSBBBG00000000053)	PPM1J (ENSBBBG00000000080)	ENSBBBG00000000132 ##22	MOV10 (ENSBBBG00000010240)	CAPZA1 (ENSBBBG00000001721)	ST7L (ENSBBBG00000010148)	WNT2B (ENSBBBG00000010055)	CTTNBP2NL (ENSBBBG00000010047)	KCND3 (ENSBBBG00000010024)	DDX20 (ENSBBBG00000001696)	INKA2 (ENSBBBG00000009986)	RAP1A (ENSBBBG00000009983)	TMIGD3 (ENSBBBG00000009970)	C1orf162 (ENSBBBG00000009963)	ENSBBBG00000009954	WDR77 (ENSBBBG00000009940)	ENSBBBG00000009924	ENSBBBG00000001651
American bison	MODERN SPECIES	3337							TMEM106B (ENSBBBG00000000633)	ENSBBBG00000000647	ENSBBBG00000000660	SCIN (ENSBBBG00000000688)	ENSBBBG00000020404	ARL4A (ENSBBBG00000008022)	ETV1 (ENSBBBG00000005511)	DGKB (ENSBBBG00000020322)	ENSBBBG00000020207	ENSBBBG00000020206 ##22	AGMO (ENSBBBG00000005448)	MEOX2 (ENSBBBG00000020180)	ENSBBBG00000020172	CRPPA (ENSBBBG00000005446)	SOSTDC1 (ENSBBBG00000020147)	LRRC72 (ENSBBBG00000005071)	ANKMY2 (ENSBBBG00000020136)	BZW2 (ENSBBBG00000020104)	ENSBBBG00000020059	AGR2 (ENSBBBG00000020054)	AGR3 (ENSBBBG00000005089)	ENSBBBG00000020041	AHR (ENSBBBG00000020035)
Bos	ANCESTRAL SPECIES		ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00390000018741.i.a	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00390000006922.m.b.a.d	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00960000191271	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965.d	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a	ENSGT00390000010711	ENSGT00940000162223.a	ENSGT00940000163644
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00390000018741.i.a	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00390000006922.m.b.a.d	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00960000191271	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965.d	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a	ENSGT00390000010711	ENSGT00940000162223.a	ENSGT00940000163644
Hybrid Bos Indicus	MODERN SPECIES	22	HIPK1 (ENSBIXG00005018665)	DCLRE1B (ENSBIXG00005018523)	AP4B1 (ENSBIXG00005002992)	BCL2L15 (ENSBIXG00005018413)	ENSBIXG00005002973	PTPN22 (ENSBIXG00005018325)	RSBN1 (ENSBIXG00005002921)	PHTF1 (ENSBIXG00005017948)	MAGI3 (ENSBIXG00005006759)	ENSBIXG00005017729	LRIG2 (ENSBIXG00005017655)	SLC16A1 (ENSBIXG00005007332)	ENSBIXG00005017390	TAFA3 (ENSBIXG00005017363)	PPM1J (ENSBIXG00005017328)	RHOC (ENSBIXG00005017234) ##22	MOV10 (ENSBIXG00005006582)	CAPZA1 (ENSBIXG00005017096)	ST7L (ENSBIXG00005017004)	ENSBIXG00005016666	WNT2B (ENSBIXG00005016642)	CTTNBP2NL (ENSBIXG00005016617)	ENSBIXG00005016579	KCND3 (ENSBIXG00005016552)	DDX20 (ENSBIXG00005006446)	INKA2 (ENSBIXG00005016422)	ENSBIXG00005005506	RAP1A (ENSBIXG00005016406)	TMIGD3 (ENSBIXG00005016366)	C1orf162 (ENSBIXG00005016331)	ENSBIXG00005016292
Cow	MODERN SPECIES	22	DCLRE1B (ENSBTAG00000003616)	AP4B1 (ENSBTAG00000003614)	BCL2L15 (ENSBTAG00000012419)	ENSBTAG00000050106	PTPN22 (ENSBTAG00000019617)	RSBN1 (ENSBTAG00000031940)	PHTF1 (ENSBTAG00000019615)	MAGI3 (ENSBTAG00000019611)	ENSBTAG00000027172	LRIG2 (ENSBTAG00000008525)	SLC16A1 (ENSBTAG00000015107)	ENSBTAG00000055008	ENSBTAG00000049434	TAFA3 (ENSBTAG00000052841)	PPM1J (ENSBTAG00000006081)	RHOC (ENSBTAG00000014299) ##22	MOV10 (ENSBTAG00000014297)	CAPZA1 (ENSBTAG00000014295)	ST7L (ENSBTAG00000014294)	WNT2B (ENSBTAG00000014291)	CTTNBP2NL (ENSBTAG00000021602)	KCND3 (ENSBTAG00000031654)	DDX20 (ENSBTAG00000018717)	INKA2 (ENSBTAG00000022580)	RAP1A (ENSBTAG00000050904)	TMIGD3 (ENSBTAG00000039738)	C3H1orf162 (ENSBTAG00000052822)	ATP5PB (ENSBTAG00000006441)	WDR77 (ENSBTAG00000014102)	OVGP1 (ENSBTAG00000005973)	ENSBTAG00000034841
Bos_a	ANCESTRAL SPECIES	32	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00940000156586.j	ENSGT00390000018096	ENSGT00390000018741.i.a	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00390000006922.m.b.a.d	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000155644	ENSGT00940000160965.d	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a	ENSGT00390000010711	ENSGT00940000162223.a	ENSGT00390000001017.k
Domestic yak	MODERN SPECIES	22	DCLRE1B (ENSBGRG00000005803)	AP4B1 (ENSBGRG00000005734)	ENSBGRG00000005701	BCL2L15 (ENSBGRG00000005689)	ENSBGRG00000005668	PTPN22 (ENSBGRG00000005181)	RSBN1 (ENSBGRG00000005063)	PHTF1 (ENSBGRG00000004890)	MAGI3 (ENSBGRG00000004622)	ENSBGRG00000004572	LRIG2 (ENSBGRG00000004542)	SLC16A1 (ENSBGRG00000004446)	TAFA3 (ENSBGRG00000004407)	ENSBGRG00000004388	ENSBGRG00000004287	RHOC (ENSBGRG00000005321) ##22	MOV10 (ENSBGRG00000005173)	CAPZA1 (ENSBGRG00000005101)	ENSBGRG00000005079	WNT2B (ENSBGRG00000005038)	ST7L (ENSBGRG00000004608)	CTTNBP2NL (ENSBGRG00000004551)	KCND3 (ENSBGRG00000004468)	DDX20 (ENSBGRG00000004420)	INKA2 (ENSBGRG00000004403)	RAP1A (ENSBGRG00000004345)	TMIGD3 (ENSBGRG00000004138)	ENSBGRG00000004068	ATP5PB (ENSBGRG00000003935)	WDR77 (ENSBGRG00000003894)	ENSBGRG00000003845
Wild yak	MODERN SPECIES	52	OLFML3 (ENSBMUG00000003103)	HIPK1 (ENSBMUG00000003071)	DCLRE1B (ENSBMUG00000003023)	AP4B1 (ENSBMUG00000003008)	ENSBMUG00000002972	BCL2L15 (ENSBMUG00000002963)	PTPN22 (ENSBMUG00000002884)	RSBN1 (ENSBMUG00000002763)	PHTF1 (ENSBMUG00000002732)	MAGI3 (ENSBMUG00000002625)	ENSBMUG00000002547	LRIG2 (ENSBMUG00000002511)	SLC16A1 (ENSBMUG00000002463)	TAFA3 (ENSBMUG00000002427)	PPM1J (ENSBMUG00000002406)	RHOC (ENSBMUG00000002344) ##22	MOV10 (ENSBMUG00000002294)	CAPZA1 (ENSBMUG00000002236)	WNT2B (ENSBMUG00000002152)	ST7L (ENSBMUG00000002092)	CTTNBP2NL (ENSBMUG00000001950)
Cetacea	ANCESTRAL SPECIES		ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a.h	ENSGT00390000010711	ENSGT00940000162223	ENSGT00390000001017.k
Blue whale	MODERN SPECIES		HIPK1 (ENSBMSG00010009685)	DCLRE1B (ENSBMSG00010009657)	AP4B1 (ENSBMSG00010009638)	BCL2L15 (ENSBMSG00010009616)	PTPN22 (ENSBMSG00010009461)	ENSBMSG00010009419	PHTF1 (ENSBMSG00010009188)	MAGI3 (ENSBMSG00010009134)	ENSBMSG00010009123	ENSBMSG00010009119	ENSBMSG00010009111	LRIG2 (ENSBMSG00010009101)	SLC16A1 (ENSBMSG00010009080)	TAFA3 (ENSBMSG00010009066)	PPM1J (ENSBMSG00010009046)	RHOC (ENSBMSG00010009025) ##22	MOV10 (ENSBMSG00010009012)	ENSBMSG00010009003	ST7L (ENSBMSG00010008960)	WNT2B (ENSBMSG00010008924)	CTTNBP2NL (ENSBMSG00010008911)	KCND3 (ENSBMSG00010008877)	DDX20 (ENSBMSG00010008840)	INKA2 (ENSBMSG00010008828)	ENSBMSG00010008815	TMIGD3 (ENSBMSG00010008799)	C1orf162 (ENSBMSG00010008781)	ENSBMSG00010008767	WDR77 (ENSBMSG00010008752)	OVGP1 (ENSBMSG00010008731)	ENSBMSG00010008706
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a.h	ENSGT00390000010711	ENSGT00940000162223	ENSGT00390000001017.k
Sperm whale	MODERN SPECIES	15	OLFML3 (ENSPCTG00005001365)	HIPK1 (ENSPCTG00005001411)	DCLRE1B (ENSPCTG00005001534)	AP4B1 (ENSPCTG00005001566)	BCL2L15 (ENSPCTG00005001602)	PTPN22 (ENSPCTG00005001654)	RSBN1 (ENSPCTG00005001718)	PHTF1 (ENSPCTG00005001771)	MAGI3 (ENSPCTG00005001838)	LRIG2 (ENSPCTG00005001890)	SLC16A1 (ENSPCTG00005001963)	ENSPCTG00005001991	ENSPCTG00005002004	TAFA3 (ENSPCTG00005002012)	PPM1J (ENSPCTG00005002033)	RHOC (ENSPCTG00005002061) ##22	MOV10 (ENSPCTG00005002086)	CAPZA1 (ENSPCTG00005002149)	ST7L (ENSPCTG00005002219)	WNT2B (ENSPCTG00005002451)	CTTNBP2NL (ENSPCTG00005002466)	KCND3 (ENSPCTG00005002492)	ENSPCTG00005002528	RAP1A (ENSPCTG00005002547)	ENSPCTG00005002576	ENSPCTG00005002585	C1orf162 (ENSPCTG00005002605)	ATP5PB (ENSPCTG00005002629)	WDR77 (ENSPCTG00005002656)	OVGP1 (ENSPCTG00005002695)	ENSPCTG00005002743
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a.h	ENSGT00390000010711	ENSGT00940000162223	ENSGT00390000001017.k
Dolphin	MODERN SPECIES	751															ENSTTRG00000010013	RHOC (ENSTTRG00000010008) ##22	MOV10 (ENSTTRG00000009983)	CAPZA1 (ENSTTRG00000009976)	ST7L (ENSTTRG00000009963)	WNT2B (ENSTTRG00000009957)	ENSTTRG00000009949
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00960000186913.c	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a.h	ENSGT00390000010711	ENSGT00940000162223	ENSGT00390000001017.k
Vaquita	MODERN SPECIES		OLFML3 (ENSPSNG00000001941)	HIPK1 (ENSPSNG00000001880)	DCLRE1B (ENSPSNG00000001829)	AP4B1 (ENSPSNG00000001771)	BCL2L15 (ENSPSNG00000001733)	PTPN22 (ENSPSNG00000001432)	RSBN1 (ENSPSNG00000001187)	PHTF1 (ENSPSNG00000001106)	ENSPSNG00000001046	MAGI3 (ENSPSNG00000000989)	ENSPSNG00000000959	LRIG2 (ENSPSNG00000000869)	SLC16A1 (ENSPSNG00000000795)	TAFA3 (ENSPSNG00000000757)	PPM1J (ENSPSNG00000000696)	RHOC (ENSPSNG00000000662) ##22	MOV10 (ENSPSNG00000000620)	CAPZA1 (ENSPSNG00000000594)	ST7L (ENSPSNG00000000464)	WNT2B (ENSPSNG00000000322)	CTTNBP2NL (ENSPSNG00000000291)	KCND3 (ENSPSNG00000000230)	DDX20 (ENSPSNG00000000108)	INKA2 (ENSPSNG00000000085)	RAP1A (ENSPSNG00000000077)	TMIGD3 (ENSPSNG00000000054)	C1orf162 (ENSPSNG00000000039)	ENSPSNG00000018380	WDR77 (ENSPSNG00000018333)	OVGP1 (ENSPSNG00000018211)	ENSPSNG00000018100
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00960000186913.c	ENSGT00940000158791	ENSGT00940000154955.e.a	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.n.a.h	ENSGT00390000010711.g	ENSGT00390000001017.l
Beluga whale	MODERN SPECIES	74	DCLRE1B (ENSDLEG00000015558)	AP4B1 (ENSDLEG00000015542)	BCL2L15 (ENSDLEG00000015535)	ENSDLEG00000015527	ENSDLEG00000015519	RSBN1 (ENSDLEG00000015513)	PHTF1 (ENSDLEG00000015505)	ENSDLEG00000015463	MAGI3 (ENSDLEG00000015437)	ENSDLEG00000015425	LRIG2 (ENSDLEG00000015322)	ENSDLEG00000015303	SLC16A1 (ENSDLEG00000015270)	FAM19A3 (ENSDLEG00000015257)	PPM1J (ENSDLEG00000015240)	RHOC (ENSDLEG00000015225) ##22	MOV10 (ENSDLEG00000015148)	CAPZA1 (ENSDLEG00000015133)	WNT2B (ENSDLEG00000015121)	CTTNBP2NL (ENSDLEG00000015110)	ST7L (ENSDLEG00000015036)	KCND3 (ENSDLEG00000015024)	DDX20 (ENSDLEG00000015010)	FAM212B (ENSDLEG00000015000)	RAP1A (ENSDLEG00000014980)	ADORA3 (ENSDLEG00000014971)	ENSDLEG00000014947	ENSDLEG00000014938	OVGP1 (ENSDLEG00000014907)	ENSDLEG00000014888	ENSDLEG00000014857
Narwhal	MODERN SPECIES	304	DCLRE1B (ENSMMNG00015015829)	AP4B1 (ENSMMNG00015015879)	BCL2L15 (ENSMMNG00015015979)	PTPN22 (ENSMMNG00015016097)	RSBN1 (ENSMMNG00015016184)	PHTF1 (ENSMMNG00015016285)	MAGI3 (ENSMMNG00015016371)	ENSMMNG00015016435	ENSMMNG00015016455	LRIG2 (ENSMMNG00015016485)	ENSMMNG00015016557	ENSMMNG00015016573	ENSMMNG00015016605	TAFA3 (ENSMMNG00015016628)	PPM1J (ENSMMNG00015016659)	RHOC (ENSMMNG00015016738) ##22	MOV10 (ENSMMNG00015016785)	CAPZA1 (ENSMMNG00015016891)	ST7L (ENSMMNG00015016977)	WNT2B (ENSMMNG00015017278)	CTTNBP2NL (ENSMMNG00015017327)	KCND3 (ENSMMNG00015017380)	DDX20 (ENSMMNG00015017446)	INKA2 (ENSMMNG00015017485)	RAP1A (ENSMMNG00015017506)	TMIGD3 (ENSMMNG00015017537)	C1orf162 (ENSMMNG00015017580)	ATP5PB (ENSMMNG00015017619)	WDR77 (ENSMMNG00015017655)	PIFO (ENSMMNG00015017677)	CHIA (ENSMMNG00015017712)
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Primates	ANCESTRAL SPECIES	4	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000154720.b	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711
Tarsier	MODERN SPECIES	3702															PPM1J (ENSTSYG00000027535)	RHOC (ENSTSYG00000034077) ##22	MOV10 (ENSTSYG00000034936)	CAPZA1 (ENSTSYG00000006259)	ST7L (ENSTSYG00000006258)	WNT2B (ENSTSYG00000033599)
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000154720.b.pb	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.t.a	ENSGT00390000010711
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00910000145979	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000154720.b.pb	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.t.a
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00390000000475.sb.u	ENSGT00390000013102.e.a.m.b	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00910000145979	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.t.a	ENSGT00390000010711
Gibbon	MODERN SPECIES	2	TRIM33 (ENSNLEG00000004699)	SYT6 (ENSNLEG00000004694)	OLFML3 (ENSNLEG00000004677)	HIPK1 (ENSNLEG00000004610)	DCLRE1B (ENSNLEG00000035337)	AP4B1 (ENSNLEG00000004580)	BCL2L15 (ENSNLEG00000027711)	PTPN22 (ENSNLEG00000004445)	RSBN1 (ENSNLEG00000004426)	PHTF1 (ENSNLEG00000004383)	MAGI3 (ENSNLEG00000004350)	LRIG2 (ENSNLEG00000004313)	SLC16A1 (ENSNLEG00000004297)	ENSNLEG00000004286	PPM1J (ENSNLEG00000004240)	RHOC (ENSNLEG00000004234) ##22	MOV10 (ENSNLEG00000004226)	CAPZA1 (ENSNLEG00000028431)	ST7L (ENSNLEG00000004126)	ENSNLEG00000004065	WNT2B (ENSNLEG00000004104)	CTTNBP2NL (ENSNLEG00000004112)	ENSNLEG00000033662	KCND3 (ENSNLEG00000004095)	DDX20 (ENSNLEG00000004040)	INKA2 (ENSNLEG00000004037)	RAP1A (ENSNLEG00000004018)	TMIGD3 (ENSNLEG00000028673)	C1orf162 (ENSNLEG00000027786)	ATP5PB (ENSNLEG00000003971)	WDR77 (ENSNLEG00000003918)
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00390000000475.sb.u.e	ENSGT00390000013102.e.a.m.b	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.t.a	ENSGT00390000010711	ENSGT00940000162223
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00390000000475.sb.u.e	ENSGT00390000013102.e.a.m.b	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.t.a	ENSGT00390000010711	ENSGT00940000162223
Gorilla	MODERN SPECIES		DCLRE1B (ENSGGOG00000011403)	AP4B1 (ENSGGOG00000011396)	BCL2L15 (ENSGGOG00000041016)	PTPN22 (ENSGGOG00000003849)	RSBN1 (ENSGGOG00000003843)	PHTF1 (ENSGGOG00000014726)	MAGI3 (ENSGGOG00000006209)	ENSGGOG00000026153	ENSGGOG00000023056	LRIG2 (ENSGGOG00000022639)	ENSGGOG00000037334	SLC16A1 (ENSGGOG00000015526)	ENSGGOG00000037218	TAFA3 (ENSGGOG00000002749)	PPM1J (ENSGGOG00000002743)	RHOC (ENSGGOG00000002741) ##22	MOV10 (ENSGGOG00000002731)	ENSGGOG00000038612	ENSGGOG00000022483	ST7L (ENSGGOG00000034881)	WNT2B (ENSGGOG00000003613)	CTTNBP2NL (ENSGGOG00000002231)	KCND3 (ENSGGOG00000015582)	DDX20 (ENSGGOG00000015576)	INKA2 (ENSGGOG00000027861)	ENSGGOG00000003037	TMIGD3 (ENSGGOG00000005924)	C1orf162 (ENSGGOG00000005921)	ATP5PB (ENSGGOG00000005215)	WDR77 (ENSGGOG00000005208)	OVGP1 (ENSGGOG00000005204)
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.t.a	ENSGT00390000010711	ENSGT00940000162223
Human	MODERN SPECIES		SYT6 (ENSG00000134207)	OLFML3 (ENSG00000116774)	HIPK1 (ENSG00000163349)	DCLRE1B (ENSG00000118655)	AP4B1 (ENSG00000134262)	BCL2L15 (ENSG00000188761)	PTPN22 (ENSG00000134242)	RSBN1 (ENSG00000081019)	PHTF1 (ENSG00000116793)	MAGI3 (ENSG00000081026)	LRIG2 (ENSG00000198799)	SLC16A1 (ENSG00000155380)	TAFA3 (ENSG00000184599)	PPM1J (ENSG00000155367)	ENSG00000271810	RHOC (ENSG00000155366) ##22	MOV10 (ENSG00000155363)	CAPZA1 (ENSG00000116489)	ST7L (ENSG00000007341)	WNT2B (ENSG00000134245)	CTTNBP2NL (ENSG00000143079)	KCND3 (ENSG00000171385)	DDX20 (ENSG00000064703)	INKA2 (ENSG00000197852)	RAP1A (ENSG00000116473)	ADORA3 (ENSG00000282608)	TMIGD3 (ENSG00000121933)	C1orf162 (ENSG00000143110)	ATP5PB (ENSG00000116459)	WDR77 (ENSG00000116455)	OVGP1 (ENSG00000085465)
Pan	ANCESTRAL SPECIES		ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000163704.h	ENSGT00910000148129	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.t.a	ENSGT00390000010711	ENSGT00940000162223	ENSGT00390000001017
Bonobo	MODERN SPECIES		SYT6 (ENSPPAG00000033807)	OLFML3 (ENSPPAG00000038025)	HIPK1 (ENSPPAG00000036666)	DCLRE1B (ENSPPAG00000031279)	AP4B1 (ENSPPAG00000038448)	BCL2L15 (ENSPPAG00000039569)	PTPN22 (ENSPPAG00000036012)	RSBN1 (ENSPPAG00000028704)	PHTF1 (ENSPPAG00000028420)	ENSPPAG00000038598	SLC16A1 (ENSPPAG00000031036)	ENSPPAG00000028885	ENSPPAG00000002404	TAFA3 (ENSPPAG00000026811)	PPM1J (ENSPPAG00000023616)	RHOC (ENSPPAG00000032447) ##22	MOV10 (ENSPPAG00000031079)	CAPZA1 (ENSPPAG00000033937)	ST7L (ENSPPAG00000037378)	WNT2B (ENSPPAG00000026756)	CTTNBP2NL (ENSPPAG00000028003)	KCND3 (ENSPPAG00000039961)	DDX20 (ENSPPAG00000031680)	INKA2 (ENSPPAG00000021509)	RAP1A (ENSPPAG00000040050)	TMIGD3 (ENSPPAG00000035113)	C1orf162 (ENSPPAG00000037238)	ENSPPAG00000040192	WDR77 (ENSPPAG00000038773)	OVGP1 (ENSPPAG00000025014)	PIFO (ENSPPAG00000005642)
Chimpanzee	MODERN SPECIES		AP4B1 (ENSPTRG00000001127)	BCL2L15 (ENSPTRG00000044863)	PTPN22 (ENSPTRG00000001125)	RSBN1 (ENSPTRG00000001124)	PHTF1 (ENSPTRG00000001123)	MAGI3 (ENSPTRG00000001121)	ENSPTRG00000052291	ENSPTRG00000049946	ENSPTRG00000051751	LRIG2 (ENSPTRG00000001120)	SLC16A1 (ENSPTRG00000001116)	ENSPTRG00000043085	ENSPTRG00000051943	TAFA3 (ENSPTRG00000001114)	PPM1J (ENSPTRG00000001113)	RHOC (ENSPTRG00000001112) ##22	MOV10 (ENSPTRG00000001111)	CAPZA1 (ENSPTRG00000001110)	ST7L (ENSPTRG00000001109)	WNT2B (ENSPTRG00000001108)	CTTNBP2NL (ENSPTRG00000001107)	KCND3 (ENSPTRG00000001106)	DDX20 (ENSPTRG00000001105)	INKA2 (ENSPTRG00000001104)	RAP1A (ENSPTRG00000001102)	TMIGD3 (ENSPTRG00000001101)	C1H1orf162 (ENSPTRG00000001100)	ATP5PB (ENSPTRG00000001099)	WDR77 (ENSPTRG00000001098)	OVGP1 (ENSPTRG00000001097)	PIFO (ENSPTRG00000001095)
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00510000047030.xb.a.d	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00910000145979	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000154720.b.pb	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.t.a	ENSGT00390000010711
Rhinopithecus	ANCESTRAL SPECIES	10	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00940000169252	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000153298.n.a.a.a.b	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00510000047030.xb.a.d	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.t.a.c.a	ENSGT00390000010711	ENSGT00940000162223	ENSGT00940000163644
Black snub-nosed monkey	MODERN SPECIES	299	OLFML3 (ENSRBIG00000037707)	HIPK1 (ENSRBIG00000028252)	DCLRE1B (ENSRBIG00000032633)	AP4B1 (ENSRBIG00000041004)	ENSRBIG00000028387	PTPN22 (ENSRBIG00000039476)	RSBN1 (ENSRBIG00000038594)	PHTF1 (ENSRBIG00000033612)	MAGI3 (ENSRBIG00000030469)	ENSRBIG00000032312	ENSRBIG00000033233	LRIG2 (ENSRBIG00000032197)	SLC16A1 (ENSRBIG00000029892)	TAFA3 (ENSRBIG00000040034)	PPM1J (ENSRBIG00000030076)	RHOC (ENSRBIG00000040896) ##22	MOV10 (ENSRBIG00000040802)	CAPZA1 (ENSRBIG00000015622)	ST7L (ENSRBIG00000042439)	WNT2B (ENSRBIG00000027268)	CTTNBP2NL (ENSRBIG00000038104)	ENSRBIG00000020563	KCND3 (ENSRBIG00000027724)	DDX20 (ENSRBIG00000030629)	INKA2 (ENSRBIG00000020811)	RAP1A (ENSRBIG00000016227)	TMIGD3 (ENSRBIG00000027992)	C1orf162 (ENSRBIG00000040804)	ENSRBIG00000036835	WDR77 (ENSRBIG00000033413)	OVGP1 (ENSRBIG00000043088)
Golden snub-nosed monkey	MODERN SPECIES	3344									ENSRROG00000026617	ENSRROG00000035234	LRIG2 (ENSRROG00000045450)	SLC16A1 (ENSRROG00000045095)	ENSRROG00000042524	TAFA3 (ENSRROG00000044261)	PPM1J (ENSRROG00000042626)	RHOC (ENSRROG00000035409) ##22	MOV10 (ENSRROG00000041135)	CAPZA1 (ENSRROG00000038535)	ST7L (ENSRROG00000036748)	WNT2B (ENSRROG00000033069)	CTTNBP2NL (ENSRROG00000031464)	ENSRROG00000009633	KCND3 (ENSRROG00000034849)	DDX20 (ENSRROG00000030608)	INKA2 (ENSRROG00000024632)	RAP1A (ENSRROG00000043025)	TMIGD3 (ENSRROG00000024975)	C1orf162 (ENSRROG00000027897)	ENSRROG00000037065	WDR77 (ENSRROG00000043838)	OVGP1 (ENSRROG00000044113)
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00510000047030.xb.a.d	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00910000145979	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT00930000151073	ENSGT00950000182857.a.a.b.a.r.a.b.b.b.a	ENSGT00390000015005	ENSGT00390000001958.t.a	ENSGT00390000010711
Vervet Monkey	MODERN SPECIES	12	BCAS2 (ENSCSAG00000001652)	TRIM33 (ENSCSAG00000001649)	SYT6 (ENSCSAG00000001648)	OLFML3 (ENSCSAG00000001647)	HIPK1 (ENSCSAG00000001645)	DCLRE1B (ENSCSAG00000001642)	AP4B1 (ENSCSAG00000001639)	BCL2L15 (ENSCSAG00000001637)	PTPN22 (ENSCSAG00000001636)	RSBN1 (ENSCSAG00000001635)	MAGI3 (ENSCSAG00000001630)	LRIG2 (ENSCSAG00000001617)	SLC16A1 (ENSCSAG00000001611)	TAFA3 (ENSCSAG00000001609)	PPM1J (ENSCSAG00000001607)	RHOC (ENSCSAG00000001602) ##22	MOV10 (ENSCSAG00000001600)	CAPZA1 (ENSCSAG00000001594)	ST7L (ENSCSAG00000001589)	WNT2B (ENSCSAG00000001587)	CTTNBP2NL (ENSCSAG00000001586)	KCND3 (ENSCSAG00000001583)	DDX20 (ENSCSAG00000001582)	INKA2 (ENSCSAG00000001581)	RAP1A (ENSCSAG00000001580)	TMIGD3 (ENSCSAG00000001579)	ENSCSAG00000000170	C1orf162 (ENSCSAG00000001578)	ATP5PB (ENSCSAG00000001577)	WDR77 (ENSCSAG00000001576)	OVGP1 (ENSCSAG00000001575)
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00510000047030.xb.a.d	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00910000145979	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT00930000151073	ENSGT00950000182857.a.a.b.a.r.a.b.b.b.a	ENSGT00390000015005	ENSGT00390000001958.t.a	ENSGT00390000010711
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00510000047030.xb.a.d	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00910000145979	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.t.a.e	ENSGT00390000010711	ENSGT00940000162223
Cercopithecinae_d	ANCESTRAL SPECIES	49	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00390000013102.e.a.m.b	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00910000145979	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.t.a.e	ENSGT00390000010711	ENSGT00940000162223
Drill	MODERN SPECIES	1360	SYT6 (ENSMLEG00000032781)	OLFML3 (ENSMLEG00000026231)	HIPK1 (ENSMLEG00000041059)	DCLRE1B (ENSMLEG00000035677)	AP4B1 (ENSMLEG00000020377)	BCL2L15 (ENSMLEG00000042056)	PTPN22 (ENSMLEG00000035739)	RSBN1 (ENSMLEG00000044249)	PHTF1 (ENSMLEG00000036566)	MAGI3 (ENSMLEG00000032185)	ENSMLEG00000037440	LRIG2 (ENSMLEG00000041869)	SLC16A1 (ENSMLEG00000039579)	TAFA3 (ENSMLEG00000035101)	PPM1J (ENSMLEG00000043770)	RHOC (ENSMLEG00000023164) ##22	MOV10 (ENSMLEG00000001940)	CAPZA1 (ENSMLEG00000035737)	ENSMLEG00000035790	ENSMLEG00000034064	ST7L (ENSMLEG00000040496)	WNT2B (ENSMLEG00000032741)	CTTNBP2NL (ENSMLEG00000017567)	KCND3 (ENSMLEG00000042640)	DDX20 (ENSMLEG00000005722)	INKA2 (ENSMLEG00000022943)	RAP1A (ENSMLEG00000028596)	TMIGD3 (ENSMLEG00000043418)	C1orf162 (ENSMLEG00000032911)	ENSMLEG00000042629	WDR77 (ENSMLEG00000038080)
Sooty mangabey	MODERN SPECIES	246	HIPK1 (ENSCATG00000014200)	AP4B1 (ENSCATG00000021570)	DCLRE1B (ENSCATG00000015222)	BCL2L15 (ENSCATG00000021796)	PTPN22 (ENSCATG00000039152)	RSBN1 (ENSCATG00000009799)	PHTF1 (ENSCATG00000041622)	MAGI3 (ENSCATG00000040829)	ENSCATG00000041691	ENSCATG00000041564	LRIG2 (ENSCATG00000029386)	SLC16A1 (ENSCATG00000031291)	ENSCATG00000036800	TAFA3 (ENSCATG00000038790)	PPM1J (ENSCATG00000013926)	RHOC (ENSCATG00000045222) ##22	MOV10 (ENSCATG00000036718)	CAPZA1 (ENSCATG00000032649)	ST7L (ENSCATG00000031918)	ENSCATG00000022037	WNT2B (ENSCATG00000014895)	CTTNBP2NL (ENSCATG00000031085)
Olive baboon	MODERN SPECIES		SYT6 (ENSPANG00000005601)	OLFML3 (ENSPANG00000015794)	HIPK1 (ENSPANG00000003119)	DCLRE1B (ENSPANG00000029371)	AP4B1 (ENSPANG00000010749)	BCL2L15 (ENSPANG00000018739)	PTPN22 (ENSPANG00000004483)	RSBN1 (ENSPANG00000019090)	PHTF1 (ENSPANG00000019967)	MAGI3 (ENSPANG00000016896)	LRIG2 (ENSPANG00000023528)	SLC16A1 (ENSPANG00000006341)	ENSPANG00000014057	TAFA3 (ENSPANG00000031926)	PPM1J (ENSPANG00000004417)	RHOC (ENSPANG00000014084) ##22	MOV10 (ENSPANG00000011819)	CAPZA1 (ENSPANG00000016077)	ST7L (ENSPANG00000005529)	WNT2B (ENSPANG00000023529)	CTTNBP2NL (ENSPANG00000007192)	ENSPANG00000041941	KCND3 (ENSPANG00000009312)	DDX20 (ENSPANG00000017985)	INKA2 (ENSPANG00000005229)	RAP1A (ENSPANG00000013352)	TMIGD3 (ENSPANG00000013353)	C1orf162 (ENSPANG00000044615)	ATP5PB (ENSPANG00000004607)	WDR77 (ENSPANG00000012473)	OVGP1 (ENSPANG00000016078)
Macaca	ANCESTRAL SPECIES		ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00910000145979	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT00930000151073	ENSGT00950000182857.a.a.b.a.r.a.b.b.b.a	ENSGT00390000015005	ENSGT00390000001958.t.a.g	ENSGT00390000010711
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT01100000263676.b.b.a.c.a	ENSGT00940000154955.f	ENSGT01100000263539.b.a.b.b.b.b.b	ENSGT00510000047030.xb.a.d	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00390000018566.i.d	ENSGT00950000182852.B	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.b.a	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT00930000151073	ENSGT00950000182857.a.a.b.a.r.a.b.b.b.a	ENSGT00390000015005	ENSGT00390000001958.t.a.g
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000064312	RSBN1 (ENSMFAG00000000754)	PHTF1 (ENSMFAG00000030077)	MAGI3 (ENSMFAG00000040138)	LRIG2 (ENSMFAG00000000102)	ENSMFAG00000064265	ENSMFAG00000051444	ENSMFAG00000062348	ENSMFAG00000047894	SLC16A1 (ENSMFAG00000035894)	ENSMFAG00000050047	ENSMFAG00000053511	ENSMFAG00000027212	ENSMFAG00000064876	MOV10 (ENSMFAG00000002283)	ENSMFAG00000001491 ##22	CAPZA1 (ENSMFAG00000035179)	ST7L (ENSMFAG00000037326)	WNT2B (ENSMFAG00000002295)	ENSMFAG00000007433	CTTNBP2NL (ENSMFAG00000054875)	ENSMFAG00000061193	KCND3 (ENSMFAG00000002047)	DDX20 (ENSMFAG00000031755)	INKA2 (ENSMFAG00000038293)	RAP1A (ENSMFAG00000034202)	TMIGD3 (ENSMFAG00000002528)	ENSMFAG00000011493	C1orf162 (ENSMFAG00000034319)	ATP5PB (ENSMFAG00000037534)	WDR77 (ENSMFAG00000030055)
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	556	HIPK1 (ENSMNEG00000040836)	DCLRE1B (ENSMNEG00000038418)	AP4B1 (ENSMNEG00000041483)	BCL2L15 (ENSMNEG00000003291)	PTPN22 (ENSMNEG00000030260)	RSBN1 (ENSMNEG00000038008)	PHTF1 (ENSMNEG00000031836)	MAGI3 (ENSMNEG00000033832)	ENSMNEG00000035375	ENSMNEG00000029222	LRIG2 (ENSMNEG00000043055)	SLC16A1 (ENSMNEG00000041688)	ENSMNEG00000036594	TAFA3 (ENSMNEG00000026429)	PPM1J (ENSMNEG00000034093)	RHOC (ENSMNEG00000036794) ##22	MOV10 (ENSMNEG00000040033)	CAPZA1 (ENSMNEG00000032031)	ST7L (ENSMNEG00000041208)	ENSMNEG00000032002	WNT2B (ENSMNEG00000037237)	CTTNBP2NL (ENSMNEG00000036126)	KCND3 (ENSMNEG00000035414)	DDX20 (ENSMNEG00000005757)	INKA2 (ENSMNEG00000040750)	RAP1A (ENSMNEG00000031184)	TMIGD3 (ENSMNEG00000038209)	ENSMNEG00000005161	C1orf162 (ENSMNEG00000034601)	ENSMNEG00000041454	WDR77 (ENSMNEG00000030129)
Pig-tailed macaque	MODERN SPECIES	92	C10orf90 (ENSMNEG00000036885)	ADAM12 (ENSMNEG00000038213)	FANK1 (ENSMNEG00000029956)	DHX32 (ENSMNEG00000044757)	ENSMNEG00000032819	UROS (ENSMNEG00000035411)	MMP21 (ENSMNEG00000044609)	EDRF1 (ENSMNEG00000030177)	TEX36 (ENSMNEG00000036041)	ENSMNEG00000045518	ENSMNEG00000020291	CTBP2 (ENSMNEG00000043278)	ZRANB1 (ENSMNEG00000030081)	ABRAXAS2 (ENSMNEG00000040445)	EEF1AKMT2 (ENSMNEG00000029600)	ENSMNEG00000024668 ##22	FAM53B (ENSMNEG00000044479)	LHPP (ENSMNEG00000028552)	NKX1-2 (ENSMNEG00000036634)	OAT (ENSMNEG00000044251)	CHST15 (ENSMNEG00000036317)	CPXM2 (ENSMNEG00000042070)	ENSMNEG00000012185	GPR26 (ENSMNEG00000032420)	ENSMNEG00000000049	HMX2 (ENSMNEG00000028435)	HMX3 (ENSMNEG00000043084)	ACADSB (ENSMNEG00000031260)	IKZF5 (ENSMNEG00000036978)	PSTK (ENSMNEG00000029291)	ENSMNEG00000032659
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.t.a	ENSGT00390000010711	ENSGT00940000162223	ENSGT00390000001017
Mas night monkey	MODERN SPECIES	648	SYT6 (ENSANAG00000026153)	OLFML3 (ENSANAG00000022699)	HIPK1 (ENSANAG00000024725)	AP4B1 (ENSANAG00000030172)	DCLRE1B (ENSANAG00000036972)	BCL2L15 (ENSANAG00000024457)	PTPN22 (ENSANAG00000019287)	RSBN1 (ENSANAG00000032046)	PHTF1 (ENSANAG00000038095)	MAGI3 (ENSANAG00000021344)	LRIG2 (ENSANAG00000023071)	ENSANAG00000021970	SLC16A1 (ENSANAG00000024305)	TAFA3 (ENSANAG00000029759)	PPM1J (ENSANAG00000026432)	RHOC (ENSANAG00000020910) ##22	MOV10 (ENSANAG00000034430)	ENSANAG00000025564	CAPZA1 (ENSANAG00000032620)	ST7L (ENSANAG00000021532)	WNT2B (ENSANAG00000032630)
Cebidae	ANCESTRAL SPECIES	1	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.t.a	ENSGT00390000010711	ENSGT00940000162223	ENSGT00390000001017
Marmoset	MODERN SPECIES	19	DCLRE1B (ENSCJAG00000079501)	AP4B1 (ENSCJAG00000012178)	ENSCJAG00000022770	ENSCJAG00000012160	PTPN22 (ENSCJAG00000012107)	RSBN1 (ENSCJAG00000012063)	PHTF1 (ENSCJAG00000012018)	MAGI3 (ENSCJAG00000011928)	ENSCJAG00000045357	LRIG2 (ENSCJAG00000013709)	ENSCJAG00000072462	ENSCJAG00000071583	SLC16A1 (ENSCJAG00000039688)	ENSCJAG00000069199	PPM1J (ENSCJAG00000013680)	RHOC (ENSCJAG00000042030) ##22	MOV10 (ENSCJAG00000013592)	CAPZA1 (ENSCJAG00000013548)	ST7L (ENSCJAG00000013490)	WNT2B (ENSCJAG00000013473)	CTTNBP2NL (ENSCJAG00000058885)	ENSCJAG00000083135	DDX20 (ENSCJAG00000013428)	KCND3 (ENSCJAG00000013456)	RAP1A (ENSCJAG00000013392)	ENSCJAG00000084304	TMIGD3 (ENSCJAG00000013385)	C1orf162 (ENSCJAG00000013381)	ATP5PB (ENSCJAG00000013353)	WDR77 (ENSCJAG00000013344)	OVGP1 (ENSCJAG00000013301)
Cebidae_a	ANCESTRAL SPECIES	41	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00390000008859.b.d.k.a.b	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.b	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.g	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.t.a	ENSGT00390000010711	ENSGT00940000162223	ENSGT00390000001017
Capuchin	MODERN SPECIES	32	BCL2L15 (ENSCCAG00000037914)	PTPN22 (ENSCCAG00000030397)	RSBN1 (ENSCCAG00000002881)	ENSCCAG00000025051	MAGI3 (ENSCCAG00000031367)	ENSCCAG00000016565	ENSCCAG00000037055	LRIG2 (ENSCCAG00000028440)	ENSCCAG00000029855	SLC16A1 (ENSCCAG00000035715)	ENSCCAG00000030295	ENSCCAG00000020811	ENSCCAG00000025186	TAFA3 (ENSCCAG00000036845)	PPM1J (ENSCCAG00000016743)	RHOC (ENSCCAG00000010980) ##22	MOV10 (ENSCCAG00000034901)	CAPZA1 (ENSCCAG00000023499)	ST7L (ENSCCAG00000031301)	WNT2B (ENSCCAG00000030621)	CTTNBP2NL (ENSCCAG00000027542)	ENSCCAG00000026900	KCND3 (ENSCCAG00000036329)	DDX20 (ENSCCAG00000026759)	INKA2 (ENSCCAG00000035044)	RAP1A (ENSCCAG00000034175)	FILIP1 (ENSCCAG00000036105)	TMEM30A (ENSCCAG00000025332)	ENSCCAG00000024466	COL12A1 (ENSCCAG00000029086)	ENSCCAG00000013592
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	219															ENSSBOG00000027369	ENSSBOG00000018515 ##22	SH3GLB1 (ENSSBOG00000030871)	SELENOF (ENSSBOG00000024213)	ENSSBOG00000021137	HS2ST1 (ENSSBOG00000025665)	LMO4 (ENSSBOG00000021024)	ENSSBOG00000022879	PKN2 (ENSSBOG00000031491)	GTF2B (ENSSBOG00000022010)	KYAT3 (ENSSBOG00000019158)	GBP1 (ENSSBOG00000030334)	ENSSBOG00000030204	GBP7 (ENSSBOG00000024869)	GBP4 (ENSSBOG00000024357)	GBP5 (ENSSBOG00000011099)	ENSSBOG00000004408
Bolivian squirrel monkey	MODERN SPECIES	98	DCLRE1B (ENSSBOG00000032509)	AP4B1 (ENSSBOG00000032743)	BCL2L15 (ENSSBOG00000035394)	PTPN22 (ENSSBOG00000029176)	RSBN1 (ENSSBOG00000026943)	PHTF1 (ENSSBOG00000031692)	ENSSBOG00000009268	MAGI3 (ENSSBOG00000034381)	LRIG2 (ENSSBOG00000024574)	ENSSBOG00000005704	ENSSBOG00000025769	SLC16A1 (ENSSBOG00000032694)	ENSSBOG00000011467	TAFA3 (ENSSBOG00000032256)	PPM1J (ENSSBOG00000030653)	ENSSBOG00000028169 ##22	MOV10 (ENSSBOG00000005229)	ENSSBOG00000035311	CAPZA1 (ENSSBOG00000029789)	ST7L (ENSSBOG00000035753)	WNT2B (ENSSBOG00000034163)	CTTNBP2NL (ENSSBOG00000030528)	KCND3 (ENSSBOG00000022440)	DDX20 (ENSSBOG00000024789)	INKA2 (ENSSBOG00000033642)	RAP1A (ENSSBOG00000019474)	TMIGD3 (ENSSBOG00000031608)	C1orf162 (ENSSBOG00000035875)	ATP5PB (ENSSBOG00000018275)	ENSSBOG00000022640	PIFO (ENSSBOG00000035544)
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.p	ENSGT00390000010711	ENSGT00940000163644
Bushbaby	MODERN SPECIES	188	SYT6 (ENSOGAG00000013925)	ENSOGAG00000028247	OLFML3 (ENSOGAG00000013922)	HIPK1 (ENSOGAG00000013919)	DCLRE1B (ENSOGAG00000013917)	AP4B1 (ENSOGAG00000026777)	BCL2L15 (ENSOGAG00000013916)	PTPN22 (ENSOGAG00000013912)	RSBN1 (ENSOGAG00000013910)	PHTF1 (ENSOGAG00000000695)	MAGI3 (ENSOGAG00000000693)	LRIG2 (ENSOGAG00000003959)	SLC16A1 (ENSOGAG00000004969)	TAFA3 (ENSOGAG00000014095)	PPM1J (ENSOGAG00000014088)	RHOC (ENSOGAG00000027678) ##22	MOV10 (ENSOGAG00000014080)	CAPZA1 (ENSOGAG00000014074)	ST7L (ENSOGAG00000014069)	WNT2B (ENSOGAG00000014065)	CTTNBP2NL (ENSOGAG00000033049)	KCND3 (ENSOGAG00000010504)	DDX20 (ENSOGAG00000010503)	INKA2 (ENSOGAG00000010502)	RAP1A (ENSOGAG00000030644)	ENSOGAG00000027410	ENSOGAG00000030415	TMIGD3 (ENSOGAG00000033613)	C1orf162 (ENSOGAG00000008150)	ENSOGAG00000011486	WDR77 (ENSOGAG00000030741)
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.p	ENSGT00390000010711	ENSGT00940000163644	ENSGT00390000001017
Mouse lemur	MODERN SPECIES	11	SYT6 (ENSMICG00000001415)	OLFML3 (ENSMICG00000001412)	HIPK1 (ENSMICG00000001399)	DCLRE1B (ENSMICG00000001396)	AP4B1 (ENSMICG00000001394)	BCL2L15 (ENSMICG00000044441)	PTPN22 (ENSMICG00000001385)	RSBN1 (ENSMICG00000001369)	PHTF1 (ENSMICG00000001360)	MAGI3 (ENSMICG00000042078)	LRIG2 (ENSMICG00000001333)	ENSMICG00000030251	ENSMICG00000012818	TAFA3 (ENSMICG00000003208)	PPM1J (ENSMICG00000035392)	RHOC (ENSMICG00000003200) ##22	MOV10 (ENSMICG00000003187)	CAPZA1 (ENSMICG00000003182)	ST7L (ENSMICG00000003173)	WNT2B (ENSMICG00000003171)	ENSMICG00000017384	CTTNBP2NL (ENSMICG00000009868)	KCND3 (ENSMICG00000046146)	DDX20 (ENSMICG00000011509)	INKA2 (ENSMICG00000033017)	ENSMICG00000011501	ADORA3 (ENSMICG00000031902)	ENSMICG00000000880	CRYZ (ENSMICG00000015873)	TYW3 (ENSMICG00000015883)	LHX8 (ENSMICG00000012199)
Lemuriformes_a	ANCESTRAL SPECIES	31	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.p	ENSGT00390000010711	ENSGT00940000163644	ENSGT00390000001017
Coquerels sifaka	MODERN SPECIES	312	OLFML3 (ENSPCOG00000012805)	HIPK1 (ENSPCOG00000026639)	DCLRE1B (ENSPCOG00000022622)	AP4B1 (ENSPCOG00000020213)	BCL2L15 (ENSPCOG00000028135)	PTPN22 (ENSPCOG00000015770)	RSBN1 (ENSPCOG00000023227)	PHTF1 (ENSPCOG00000015525)	MAGI3 (ENSPCOG00000018778)	LRIG2 (ENSPCOG00000022796)	ENSPCOG00000014866	SLC16A1 (ENSPCOG00000000196)	ENSPCOG00000024992	TAFA3 (ENSPCOG00000026544)	PPM1J (ENSPCOG00000023155)	RHOC (ENSPCOG00000016989) ##22	MOV10 (ENSPCOG00000005180)	CAPZA1 (ENSPCOG00000016605)	ST7L (ENSPCOG00000026016)	WNT2B (ENSPCOG00000000657)	CTTNBP2NL (ENSPCOG00000018565)
Greater bamboo lemur	MODERN SPECIES	507														TAFA3 (ENSPSMG00000009787)	PPM1J (ENSPSMG00000009821)	RHOC (ENSPSMG00000009860) ##22	MOV10 (ENSPSMG00000009983)	CAPZA1 (ENSPSMG00000010026)	ST7L (ENSPSMG00000010180)	WNT2B (ENSPSMG00000010388)	CTTNBP2NL (ENSPSMG00000010396)	KCND3 (ENSPSMG00000010421)	ENSPSMG00000010429	DDX20 (ENSPSMG00000010456)	ENSPSMG00000010468	RAP1A (ENSPSMG00000010516)	TMIGD3 (ENSPSMG00000010613)	C1orf162 (ENSPSMG00000010617)	ATP5PB (ENSPSMG00000010639)	WDR77 (ENSPSMG00000010667)	ENSPSMG00000010689
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Tree shrew	MODERN SPECIES	669														TAFA3 (ENSTBEG00000002062)	PPM1J (ENSTBEG00000001998)	RHOC (ENSTBEG00000001923) ##22	MOV10 (ENSTBEG00000001811)	CAPZA1 (ENSTBEG00000001727)
Glires	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT00930000151073	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Rabbit	MODERN SPECIES	4	HIPK1 (ENSOCUG00000003785)	ENSOCUG00000025002	DCLRE1B (ENSOCUG00000003782)	AP4B1 (ENSOCUG00000003778)	BCL2L15 (ENSOCUG00000003775)	PTPN22 (ENSOCUG00000003763)	RSBN1 (ENSOCUG00000003759)	PHTF1 (ENSOCUG00000003752)	MAGI3 (ENSOCUG00000017382)	ENSOCUG00000024668	LRIG2 (ENSOCUG00000010256)	ENSOCUG00000035073	SLC16A1 (ENSOCUG00000016776)	TAFA3 (ENSOCUG00000000280)	PPM1J (ENSOCUG00000006310)	ENSOCUG00000027213 ##22	MOV10 (ENSOCUG00000000276)	CAPZA1 (ENSOCUG00000000270)	ENSOCUG00000000269	WNT2B (ENSOCUG00000000266)	CTTNBP2NL (ENSOCUG00000023315)	ENSOCUG00000023372	KCND3 (ENSOCUG00000014279)	DDX20 (ENSOCUG00000025939)	INKA2 (ENSOCUG00000017680)	RAP1A (ENSOCUG00000030320)	ENSOCUG00000024498	ENSOCUG00000007822	ADORA3 (ENSOCUG00000023239)	C1orf162 (ENSOCUG00000007816)	ENSOCUG00000007809
Pika	MODERN SPECIES	1795																RHOC (ENSOPRG00000009284) ##22	MOV10 (ENSOPRG00000009237)	CAPZA1 (ENSOPRG00000009218)	ST7L (ENSOPRG00000009188)	WNT2B (ENSOPRG00000009177)	CTTNBP2NL (ENSOPRG00000009157)
Rodentia	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g.a.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Muroidea	ANCESTRAL SPECIES	6	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g.a.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	868	Olfml3 (ENSNGAG00000017564)	ENSNGAG00000012040	ENSNGAG00000022816	Hipk1 (ENSNGAG00000022219)	Ap4b1 (ENSNGAG00000003659)	Bcl2l15 (ENSNGAG00000023256)	ENSNGAG00000017059	Rsbn1 (ENSNGAG00000019425)	Phtf1 (ENSNGAG00000015016)	ENSNGAG00000016204	Magi3 (ENSNGAG00000011689)	Lrig2 (ENSNGAG00000010221)	Slc16a1 (ENSNGAG00000014061)	Tafa3 (ENSNGAG00000018382)	Ppm1j (ENSNGAG00000021142)	ENSNGAG00000013328 ##22	Mov10 (ENSNGAG00000021868)	ENSNGAG00000022738	St7l (ENSNGAG00000024221)	Wnt2b (ENSNGAG00000016171)	Cttnbp2nl (ENSNGAG00000021422)	Kcnd3 (ENSNGAG00000011906)	Ddx20 (ENSNGAG00000022953)	Inka2 (ENSNGAG00000015197)	Rap1a (ENSNGAG00000022775)	Adora3 (ENSNGAG00000001830)	Tmigd3 (ENSNGAG00000021259)	I830077J02Rik (ENSNGAG00000018819)	ENSNGAG00000023617	ENSNGAG00000003051	Ovgp1 (ENSNGAG00000023031)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1840	Dgki (ENSNGAG00000020337)	Ptn (ENSNGAG00000020362)	Chrm2 (ENSNGAG00000015929)	ENSNGAG00000016392	Fam180a (ENSNGAG00000017592)	Slc13a4 (ENSNGAG00000019669)	Nup205 (ENSNGAG00000016680)	Cnot4 (ENSNGAG00000015030)	Slc23a4 (ENSNGAG00000010060)	Stra8 (ENSNGAG00000015135)	ENSNGAG00000014034	Cyren (ENSNGAG00000007088)	Tmem140 (ENSNGAG00000000523)	ENSNGAG00000012095	Cald1 (ENSNGAG00000011387)	ENSNGAG00000001111 ##22	Bpgm (ENSNGAG00000018030) ##29	ENSNGAG00000010855	ENSNGAG00000013275
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g.a.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT01090000262147	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g.a.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT01090000262147	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g.a.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Northern American deer mouse	MODERN SPECIES	19	Syt6 (ENSPEMG00000013637)	Olfml3 (ENSPEMG00000010380)	Hipk1 (ENSPEMG00000020639)	Dclre1b (ENSPEMG00000025394)	Ap4b1 (ENSPEMG00000021858)	ENSPEMG00000031377	Bcl2l15 (ENSPEMG00000022471)	Ptpn22 (ENSPEMG00000026650)	Rsbn1 (ENSPEMG00000020974)	Phtf1 (ENSPEMG00000022049)	Magi3 (ENSPEMG00000021592)	Lrig2 (ENSPEMG00000023837)	Slc16a1 (ENSPEMG00000012987)	Tafa3 (ENSPEMG00000019797)	Ppm1j (ENSPEMG00000019596)	Rhoc (ENSPEMG00000019894) ##22	Mov10 (ENSPEMG00000007910)	ENSPEMG00000011887	St7l (ENSPEMG00000019718)	Wnt2b (ENSPEMG00000026096)	Cttnbp2nl (ENSPEMG00000025093)	Kcnd3 (ENSPEMG00000020087)	Ddx20 (ENSPEMG00000019595)	Inka2 (ENSPEMG00000025785)	Rap1a (ENSPEMG00000030241)	Adora3 (ENSPEMG00000019889)	Tmigd3 (ENSPEMG00000019932)	I830077J02Rik (ENSPEMG00000019698)	ENSPEMG00000020053	Wdr77 (ENSPEMG00000019900)	ENSPEMG00000019924
Prairie vole	MODERN SPECIES	143						Bcl2l15 (ENSMOCG00000012353)	ENSMOCG00000015941	Rsbn1 (ENSMOCG00000005658)	Phtf1 (ENSMOCG00000001641)	Magi3 (ENSMOCG00000012680)	ENSMOCG00000019954	Lrig2 (ENSMOCG00000001665)	Slc16a1 (ENSMOCG00000016724)	Tafa3 (ENSMOCG00000016194)	Ppm1j (ENSMOCG00000011058)	Rhoc (ENSMOCG00000013270) ##22	Mov10 (ENSMOCG00000007110)	Capza1 (ENSMOCG00000007375)	St7l (ENSMOCG00000020030)	Wnt2b (ENSMOCG00000013588)	Cttnbp2nl (ENSMOCG00000014559)	Kcnd3 (ENSMOCG00000019614)	Ddx20 (ENSMOCG00000012954)	Inka2 (ENSMOCG00000012240)	Rap1a (ENSMOCG00000002767)	Adora3 (ENSMOCG00000009194)	I830077J02Rik (ENSMOCG00000001066)	ENSMOCG00000018208	Wdr77 (ENSMOCG00000000531)	Ovgp1 (ENSMOCG00000007897)	Pifo (ENSMOCG00000007744)
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175.i	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g.a.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT01090000262147	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711
Chinese hamster chok1gshd	MODERN SPECIES	66	Syt6 (ENSCGRG00001021814)	Olfml3 (ENSCGRG00001021257)	Hipk1 (ENSCGRG00001014954)	Dclre1b (ENSCGRG00001007757)	Ap4b1 (ENSCGRG00001011109)	Bcl2l15 (ENSCGRG00001020305)	Ptpn22 (ENSCGRG00001010081)	Rsbn1 (ENSCGRG00001018807)	Phtf1 (ENSCGRG00001000594)	Magi3 (ENSCGRG00001019918)	ENSCGRG00001012904	Lrig2 (ENSCGRG00001000172)	Slc16a1 (ENSCGRG00001016479)	Tafa3 (ENSCGRG00001000102)	Ppm1j (ENSCGRG00001010908)	Rhoc (ENSCGRG00001021156) ##22	Mov10 (ENSCGRG00001010914)	Capza1 (ENSCGRG00001002836)	St7l (ENSCGRG00001014565)	Wnt2b (ENSCGRG00001012445)	ENSCGRG00001004537	Cttnbp2nl (ENSCGRG00001022371)	ENSCGRG00001001537	Kcnd3 (ENSCGRG00001015791)	Ddx20 (ENSCGRG00001014132)	Inka2 (ENSCGRG00001010315)	Rap1a (ENSCGRG00001016141)	Adora3 (ENSCGRG00001021966)	Tmigd3 (ENSCGRG00001018286)	I830077J02Rik (ENSCGRG00001009120)	Atp5pb (ENSCGRG00001013168)
Golden Hamster	MODERN SPECIES	681	Syt6 (ENSMAUG00000017513)	Olfml3 (ENSMAUG00000000373)	Hipk1 (ENSMAUG00000004979)	ENSMAUG00000003242	Ap4b1 (ENSMAUG00000009537)	Bcl2l15 (ENSMAUG00000012761)	ENSMAUG00000013405	Rsbn1 (ENSMAUG00000014143)	Phtf1 (ENSMAUG00000007035)	Magi3 (ENSMAUG00000007363)	Lrig2 (ENSMAUG00000014920)	ENSMAUG00000017894	Slc16a1 (ENSMAUG00000014512)	Tafa3 (ENSMAUG00000019199)	Ppm1j (ENSMAUG00000001898)	Rhoc (ENSMAUG00000011420) ##22	Mov10 (ENSMAUG00000013906)	Capza1 (ENSMAUG00000015757)	St7l (ENSMAUG00000016886)	Wnt2b (ENSMAUG00000005891)	Cttnbp2nl (ENSMAUG00000013248)	ENSMAUG00000014776	Kcnd3 (ENSMAUG00000019508)	Ddx20 (ENSMAUG00000010659)	Inka2 (ENSMAUG00000011511)	Rap1a (ENSMAUG00000013379)	Adora3 (ENSMAUG00000014394)	Tmigd3 (ENSMAUG00000010720)	I830077J02Rik (ENSMAUG00000012709)	ENSMAUG00000013010	Atp5pb (ENSMAUG00000014472)
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g.a.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT01090000262147	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711
Mus	ANCESTRAL SPECIES	7	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g.a.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT01090000262147	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g.a.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT01090000262147	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g.a.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT01090000262147	ENSGT01090000262870	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958
Mouse	MODERN SPECIES	12	Syt6 (ENSMUSG00000027849)	Atg4a-ps (ENSMUSG00000087119)	Olfml3 (ENSMUSG00000027848)	Hipk1 (ENSMUSG00000008730)	Dclre1b (ENSMUSG00000027845)	Ap4b1 (ENSMUSG00000032952)	Bcl2l15 (ENSMUSG00000044165)	Ptpn22 (ENSMUSG00000027843)	Rsbn1 (ENSMUSG00000044098)	Phtf1 (ENSMUSG00000058388)	Magi3 (ENSMUSG00000052539)	Lrig2 (ENSMUSG00000032913)	Slc16a1 (ENSMUSG00000032902)	Tafa3 (ENSMUSG00000055865)	Ppm1j (ENSMUSG00000002228)	Rhoc (ENSMUSG00000002233) ##22	Mov10 (ENSMUSG00000002227)	Capza1 (ENSMUSG00000070372)	St7l (ENSMUSG00000045576)	Wnt2b (ENSMUSG00000027840)	Cttnbp2nl (ENSMUSG00000062127)	Kcnd3 (ENSMUSG00000040896)	Ddx20 (ENSMUSG00000027905)	Inka2 (ENSMUSG00000048458)	Rap1a (ENSMUSG00000068798)	Adora3 (ENSMUSG00000000562)	Tmigd3 (ENSMUSG00000074344)	I830077J02Rik (ENSMUSG00000074342)	Atp5pb (ENSMUSG00000000563)	Wdr77 (ENSMUSG00000000561)	Ovgp1 (ENSMUSG00000074340)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g.a.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT01090000262147	ENSGT01090000262870	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958
spretus	MODERN SPECIES	12	Syt6 (MGP_SPRETEiJ_G0026400)	Olfml3 (MGP_SPRETEiJ_G0026401)	Hipk1 (MGP_SPRETEiJ_G0026402)	Dclre1b (MGP_SPRETEiJ_G0026403)	MGP_SPRETEiJ_G0026404	MGP_SPRETEiJ_G0026405	Bcl2l15 (MGP_SPRETEiJ_G0026406)	Ptpn22 (MGP_SPRETEiJ_G0026407)	Rsbn1 (MGP_SPRETEiJ_G0026408)	Phtf1 (MGP_SPRETEiJ_G0026409)	Magi3 (MGP_SPRETEiJ_G0026410)	Lrig2 (MGP_SPRETEiJ_G0026411)	Slc16a1 (MGP_SPRETEiJ_G0026412)	Tafa3 (MGP_SPRETEiJ_G0026413)	Ppm1j (MGP_SPRETEiJ_G0026414)	Rhoc (MGP_SPRETEiJ_G0026415) ##22	Mov10 (MGP_SPRETEiJ_G0026416)	Capza1 (MGP_SPRETEiJ_G0026417)	St7l (MGP_SPRETEiJ_G0026418)	Wnt2b (MGP_SPRETEiJ_G0026419)	Cttnbp2nl (MGP_SPRETEiJ_G0026420)	MGP_SPRETEiJ_G0026421	Kcnd3 (MGP_SPRETEiJ_G0026422)	Ddx20 (MGP_SPRETEiJ_G0026423)	Inka2 (MGP_SPRETEiJ_G0026424)	Rap1a (MGP_SPRETEiJ_G0026425)	MGP_SPRETEiJ_G0026426	Tmigd3 (MGP_SPRETEiJ_G0026427)	I830077J02Rik (MGP_SPRETEiJ_G0026428)	Atp5pb (MGP_SPRETEiJ_G0026429)	Wdr77 (MGP_SPRETEiJ_G0026430)
Steppe mouse	MODERN SPECIES	3244	Olfml3 (ENSMSIG00000011637)	Hipk1 (ENSMSIG00000011445)	Dclre1b (ENSMSIG00000011393)	Ap4b1 (ENSMSIG00000011131)	Bcl2l15 (ENSMSIG00000011102)	Ptpn22 (ENSMSIG00000011040)	Rsbn1 (ENSMSIG00000011020)	Phtf1 (ENSMSIG00000010806)	Magi3 (ENSMSIG00000010539)	ENSMSIG00000010520	Lrig2 (ENSMSIG00000010388)	Slc16a1 (ENSMSIG00000010368)	ENSMSIG00000010355	Tafa3 (ENSMSIG00000010329)	Ppm1j (ENSMSIG00000010303)	Rhoc (ENSMSIG00000010271) ##22	Mov10 (ENSMSIG00000010092)	Capza1 (ENSMSIG00000010067)	ENSMSIG00000010040	St7l (ENSMSIG00000009967)	Wnt2b (ENSMSIG00000009937)	Cttnbp2nl (ENSMSIG00000009897)	ENSMSIG00000009885
Ryukyu mouse	MODERN SPECIES	12	Olfml3 (MGP_CAROLIEiJ_G0025451)	MGP_CAROLIEiJ_G0025452	Hipk1 (MGP_CAROLIEiJ_G0025453)	Dclre1b (MGP_CAROLIEiJ_G0025454)	MGP_CAROLIEiJ_G0025455	MGP_CAROLIEiJ_G0025456	Bcl2l15 (MGP_CAROLIEiJ_G0025457)	Ptpn22 (MGP_CAROLIEiJ_G0025458)	Rsbn1 (MGP_CAROLIEiJ_G0025459)	Phtf1 (MGP_CAROLIEiJ_G0025460)	Magi3 (MGP_CAROLIEiJ_G0025461)	Lrig2 (MGP_CAROLIEiJ_G0025462)	Slc16a1 (MGP_CAROLIEiJ_G0025463)	Tafa3 (MGP_CAROLIEiJ_G0025464)	Ppm1j (MGP_CAROLIEiJ_G0025465)	Rhoc (MGP_CAROLIEiJ_G0025466) ##22	Mov10 (MGP_CAROLIEiJ_G0025467)	Capza1 (MGP_CAROLIEiJ_G0025468)	St7l (MGP_CAROLIEiJ_G0025469)	Wnt2b (MGP_CAROLIEiJ_G0025470)	Cttnbp2nl (MGP_CAROLIEiJ_G0025471)	MGP_CAROLIEiJ_G0025472	Kcnd3 (MGP_CAROLIEiJ_G0025473)	Ddx20 (MGP_CAROLIEiJ_G0025474)	Inka2 (MGP_CAROLIEiJ_G0025475)	Rap1a (MGP_CAROLIEiJ_G0025476)	Adora3 (MGP_CAROLIEiJ_G0025477)	Tmigd3 (MGP_CAROLIEiJ_G0025478)	I830077J02Rik (MGP_CAROLIEiJ_G0025479)	Atp5pb (MGP_CAROLIEiJ_G0025480)	Wdr77 (MGP_CAROLIEiJ_G0025481)
Shrew mouse	MODERN SPECIES	17	MGP_PahariEiJ_G0026896	Hipk1 (MGP_PahariEiJ_G0026897)	Dclre1b (MGP_PahariEiJ_G0026898)	MGP_PahariEiJ_G0026899	MGP_PahariEiJ_G0026900	Bcl2l15 (MGP_PahariEiJ_G0026901)	Ptpn22 (MGP_PahariEiJ_G0026902)	MGP_PahariEiJ_G0026903	Rsbn1 (MGP_PahariEiJ_G0026904)	Phtf1 (MGP_PahariEiJ_G0026905)	Magi3 (MGP_PahariEiJ_G0026906)	Lrig2 (MGP_PahariEiJ_G0026907)	Slc16a1 (MGP_PahariEiJ_G0026908)	Tafa3 (MGP_PahariEiJ_G0026909)	Ppm1j (MGP_PahariEiJ_G0026910)	Rhoc (MGP_PahariEiJ_G0026911) ##22	Mov10 (MGP_PahariEiJ_G0026912)	Capza1 (MGP_PahariEiJ_G0026913)	St7l (MGP_PahariEiJ_G0026914)	Wnt2b (MGP_PahariEiJ_G0026915)	Cttnbp2nl (MGP_PahariEiJ_G0026916)	MGP_PahariEiJ_G0026917	Kcnd3 (MGP_PahariEiJ_G0026918)	Ddx20 (MGP_PahariEiJ_G0026919)	Inka2 (MGP_PahariEiJ_G0026920)	Rap1a (MGP_PahariEiJ_G0026921)	Adora3 (MGP_PahariEiJ_G0026922)	Tmigd3 (MGP_PahariEiJ_G0026923)	I830077J02Rik (MGP_PahariEiJ_G0026924)	Atp5pb (MGP_PahariEiJ_G0026925)	Wdr77 (MGP_PahariEiJ_G0026926)
Rat	MODERN SPECIES	11	Olfml3 (ENSRNOG00000019211)	Hipk1 (ENSRNOG00000019333)	Dclre1b (ENSRNOG00000019367)	Ap4b1 (ENSRNOG00000019455)	Bcl2l15 (ENSRNOG00000037149)	Ptpn22 (ENSRNOG00000019614)	Rsbn1 (ENSRNOG00000019671)	Phtf1 (ENSRNOG00000019785)	Magi3 (ENSRNOG00000019885)	AABR07012763.1 (ENSRNOG00000057707)	Rplp0l1 (ENSRNOG00000031358)	Lrig2 (ENSRNOG00000019957)	Slc16a1 (ENSRNOG00000019996)	Tafa3 (ENSRNOG00000030253)	Ppm1j (ENSRNOG00000012481)	Rhoc (ENSRNOG00000012630) ##22	Mov10 (ENSRNOG00000012946)	Capza1 (ENSRNOG00000013538)	St7l (ENSRNOG00000014002)	Wnt2b (ENSRNOG00000014385)	Cttnbp2nl (ENSRNOG00000014479)	ENSRNOG00000068611	ENSRNOG00000066674	Kcnd3 (ENSRNOG00000014686)	Ddx20 (ENSRNOG00000015274)	Inka2 (ENSRNOG00000015691)	Rap1a (ENSRNOG00000032463)	Tmigd3 (ENSRNOG00000043375)	Adora3 (ENSRNOG00000015788)	C2h1orf162 (ENSRNOG00000070434)	Atp5pb (ENSRNOG00000064742)
Lesser Egyptian jerboa	MODERN SPECIES	69												Lrig2 (ENSJJAG00000015856)	ENSJJAG00000023936	Tafa3 (ENSJJAG00000001192)	Ppm1j (ENSJJAG00000014989)	Rhoc (ENSJJAG00000004154) ##22	Mov10 (ENSJJAG00000016562)	ENSJJAG00000017577	St7l (ENSJJAG00000019603)	Kcnd3 (ENSJJAG00000023895)	Ddx20 (ENSJJAG00000011198)	Rap1a (ENSJJAG00000013293)	Adora3 (ENSJJAG00000018221)	Tmigd3 (ENSJJAG00000011089)	I830077J02Rik (ENSJJAG00000018125)	ENSJJAG00000021163	Wdr77 (ENSJJAG00000012937)	Ovgp1 (ENSJJAG00000019837)	Pifo (ENSJJAG00000002457)	ENSJJAG00000000819	Dennd2d (ENSJJAG00000014786)
Kangaroo rat	MODERN SPECIES	397	Selenof (ENSDORG00000012753)	Hs2st1 (ENSDORG00000012755)	Lmo4 (ENSDORG00000025582)	Pkn2 (ENSDORG00000008025)	Gtf2b (ENSDORG00000008028)	Kyat3 (ENSDORG00000011824)	ENSDORG00000026024	ENSDORG00000024961	ENSDORG00000025437	ENSDORG00000026684	Gbp5 (ENSDORG00000013912)	ENSDORG00000014806	ENSDORG00000002853	Tafa3 (ENSDORG00000000682)	Ppm1j (ENSDORG00000000680)	Rhoc (ENSDORG00000003382) ##22	Mov10 (ENSDORG00000000673)	ENSDORG00000000671	St7l (ENSDORG00000015552)	Wnt2b (ENSDORG00000025091)	Cttnbp2nl (ENSDORG00000027299)	Kcnd3 (ENSDORG00000011661)	Ddx20 (ENSDORG00000011660)	Inka2 (ENSDORG00000011659)	Rap1a (ENSDORG00000011656)	Adora3 (ENSDORG00000024247)	Tmigd3 (ENSDORG00000000135)	I830077J02Rik (ENSDORG00000000130)	ENSDORG00000013352	Wdr77 (ENSDORG00000027503)	ENSDORG00000013347
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Degu	DUPLICATION
Degu	MODERN SPECIES	181	HIPK1 (ENSODEG00000007245)	ENSODEG00000007048	AP4B1 (ENSODEG00000008168)	BCL2L15 (ENSODEG00000008721)	ENSODEG00000007130	RSBN1 (ENSODEG00000007878)	ENSODEG00000008326	PHTF1 (ENSODEG00000007432)	MAGI3 (ENSODEG00000007160)	ENSODEG00000019722	ENSODEG00000009254	LRIG2 (ENSODEG00000012585)	SLC16A1 (ENSODEG00000007835)	TAFA3 (ENSODEG00000009074)	PPM1J (ENSODEG00000007627)	ENSODEG00000008244 ##22	MOV10 (ENSODEG00000010401)	ENSODEG00000007252	ST7L (ENSODEG00000007468)	WNT2B (ENSODEG00000008783)	CTTNBP2NL (ENSODEG00000008068)	KCND3 (ENSODEG00000008613)	ENSODEG00000007653	INKA2 (ENSODEG00000009526)	ENSODEG00000008652	ENSODEG00000007477	ADORA3 (ENSODEG00000007861)	ENSODEG00000008789	ENSODEG00000009577	WDR77 (ENSODEG00000008128)	OVGP1 (ENSODEG00000010601)
Degu	MODERN SPECIES	42	ELOVL7 (ENSODEG00000016616)	ENSODEG00000017264	ERCC8 (ENSODEG00000016868)	NDUFAF2 (ENSODEG00000016635)	ENSODEG00000020436	ZSWIM6 (ENSODEG00000016625)	ENSODEG00000016595	ENSODEG00000020416	ENSODEG00000020469	KIF2A (ENSODEG00000016553)	DIMT1 (ENSODEG00000016626)	ENSODEG00000016524	IPO11 (ENSODEG00000017269)	ENSODEG00000020362	ENSODEG00000017157	ENSODEG00000020425 ##22	ENSODEG00000016461	HTR1A (ENSODEG00000020427)	ENSODEG00000016704	RGS7BP (ENSODEG00000016411)	SHISAL2B (ENSODEG00000016823)	SREK1IP1 (ENSODEG00000016833)	ENSODEG00000016422	ENSODEG00000017174	ADAMTS6 (ENSODEG00000016583)	ENSODEG00000016266	ENSODEG00000016993	PPWD1 (ENSODEG00000016437)	TRIM23 (ENSODEG00000016997)	TRAPPC13 (ENSODEG00000016684)	ENSODEG00000017310
Long-tailed chinchilla	MODERN SPECIES	142	TRIM33 (ENSCLAG00000017369)	SYT6 (ENSCLAG00000011901)	OLFML3 (ENSCLAG00000007544)	ENSCLAG00000006859	HIPK1 (ENSCLAG00000004892)	AP4B1 (ENSCLAG00000006193)	BCL2L15 (ENSCLAG00000013554)	ENSCLAG00000009628	RSBN1 (ENSCLAG00000008858)	PHTF1 (ENSCLAG00000010050)	MAGI3 (ENSCLAG00000005341)	LRIG2 (ENSCLAG00000004883)	SLC16A1 (ENSCLAG00000006864)	TAFA3 (ENSCLAG00000005391)	PPM1J (ENSCLAG00000005118)	RHOC (ENSCLAG00000004444) ##22	MOV10 (ENSCLAG00000008493)	CAPZA1 (ENSCLAG00000007602)	ST7L (ENSCLAG00000007732)	WNT2B (ENSCLAG00000005379)	CTTNBP2NL (ENSCLAG00000006818)	KCND3 (ENSCLAG00000005748)	DDX20 (ENSCLAG00000008874)	INKA2 (ENSCLAG00000007395)	RAP1A (ENSCLAG00000006589)	ADORA3 (ENSCLAG00000006054)	ENSCLAG00000009052	C1orf162 (ENSCLAG00000009693)	ATP5PB (ENSCLAG00000006182)	WDR77 (ENSCLAG00000005791)	OVGP1 (ENSCLAG00000005245)
Guinea pig	MODERN SPECIES	2	BCAS2 (ENSCPOG00000020532)	TRIM33 (ENSCPOG00000010140)	SYT6 (ENSCPOG00000011032)	OLFML3 (ENSCPOG00000001291)	HIPK1 (ENSCPOG00000001289)	ENSCPOG00000032000	AP4B1 (ENSCPOG00000001286)	ENSCPOG00000037879	RSBN1 (ENSCPOG00000006990)	PHTF1 (ENSCPOG00000006981)	MAGI3 (ENSCPOG00000006971)	LRIG2 (ENSCPOG00000006833)	SLC16A1 (ENSCPOG00000022989)	TAFA3 (ENSCPOG00000036826)	PPM1J (ENSCPOG00000004145)	RHOC (ENSCPOG00000014541) ##22	MOV10 (ENSCPOG00000014537)	CAPZA1 (ENSCPOG00000014532)	ST7L (ENSCPOG00000014528)	WNT2B (ENSCPOG00000000194)	CTTNBP2NL (ENSCPOG00000040118)	KCND3 (ENSCPOG00000001820)	DDX20 (ENSCPOG00000032340)	INKA2 (ENSCPOG00000001816)	RAP1A (ENSCPOG00000032437)	ADORA3 (ENSCPOG00000032151)	C1orf162 (ENSCPOG00000025561)	ATP5PB (ENSCPOG00000014070)	WDR77 (ENSCPOG00000025009)	OVGP1 (ENSCPOG00000000902)	PIFO (ENSCPOG00000033762)
Naked mole-rat female	MODERN SPECIES	10	OLFML3 (ENSHGLG00000009717)	HIPK1 (ENSHGLG00000008264)	DCLRE1B (ENSHGLG00000042662)	AP4B1 (ENSHGLG00000005105)	PTPN22 (ENSHGLG00000010840)	ENSHGLG00000033150	RSBN1 (ENSHGLG00000009455)	PHTF1 (ENSHGLG00000015252)	MAGI3 (ENSHGLG00000005209)	ENSHGLG00000035626	LRIG2 (ENSHGLG00000016354)	ENSHGLG00000016346	ENSHGLG00000034195	TAFA3 (ENSHGLG00000018506)	PPM1J (ENSHGLG00000009548)	RHOC (ENSHGLG00000032070) ##22	MOV10 (ENSHGLG00000004970)	ENSHGLG00000045694	ST7L (ENSHGLG00000018040)	WNT2B (ENSHGLG00000014959)	ENSHGLG00000003197	ENSHGLG00000016608	ENSHGLG00000042226	ENSHGLG00000017681	ENSHGLG00000038826	ENSHGLG00000017438	DDX20 (ENSHGLG00000014848)	FAM212B (ENSHGLG00000032533)	RAP1A (ENSHGLG00000008139)	ADORA3 (ENSHGLG00000006832)	ENSHGLG00000004637
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.f.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.n	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Eurasian red squirrel	MODERN SPECIES		SYT6 (ENSSVLG00005021841)	HIPK1 (ENSSVLG00005021676)	DCLRE1B (ENSSVLG00005021579)	AP4B1 (ENSSVLG00005021467)	BCL2L15 (ENSSVLG00005021402)	PTPN22 (ENSSVLG00005020484)	RSBN1 (ENSSVLG00005020283)	PHTF1 (ENSSVLG00005020069)	MAGI3 (ENSSVLG00005019925)	ENSSVLG00005019855	LRIG2 (ENSSVLG00005019679)	SLC16A1 (ENSSVLG00005019541)	ENSSVLG00005019446	TAFA3 (ENSSVLG00005019351)	PPM1J (ENSSVLG00005019163)	RHOC (ENSSVLG00005019061) ##22	MOV10 (ENSSVLG00005019002)	ENSSVLG00005018884	ST7L (ENSSVLG00005018716)	WNT2B (ENSSVLG00005018609)	CTTNBP2NL (ENSSVLG00005018565)	KCND3 (ENSSVLG00005018411)	DDX20 (ENSSVLG00005018335)	INKA2 (ENSSVLG00005018314)	ENSSVLG00005018277	TMIGD3 (ENSSVLG00005018210)	C1orf162 (ENSSVLG00005018121)	ENSSVLG00005017977	WDR77 (ENSSVLG00005017918)	OVGP1 (ENSSVLG00005017787)	PIFO (ENSSVLG00005017626)
Marmotini	DUPLICATION
Marmotini	ANCESTRAL SPECIES	62	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644.d	ENSGT00940000154955.e.b	ENSGT00940000155644.c.b	ENSGT00940000155644.c.a	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a.q ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a.d.g	ENSGT00950000183119.a.e.a.d.f.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.n	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.ib.a	ENSGT00390000010711
Marmotini_b	ANCESTRAL SPECIES	74	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000155644.d	ENSGT00940000154955.e.b	ENSGT00940000155644.c.a	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a.q ##22	ENSGT00940000156024.g	ENSGT00950000183119.a.e.a.d.g	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251.n	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958.ib.a	ENSGT00390000010711	ENSGT00940000162223
Squirrel	MODERN SPECIES	290	TRIM33 (ENSSTOG00000021676)	SYT6 (ENSSTOG00000021937)	OLFML3 (ENSSTOG00000003712)	HIPK1 (ENSSTOG00000020558)	DCLRE1B (ENSSTOG00000014699)	AP4B1 (ENSSTOG00000014697)	BCL2L15 (ENSSTOG00000014693)	PTPN22 (ENSSTOG00000014683)	RSBN1 (ENSSTOG00000005592)	PHTF1 (ENSSTOG00000005566)	MAGI3 (ENSSTOG00000005528)	LRIG2 (ENSSTOG00000000595)	SLC16A1 (ENSSTOG00000006137)	TAFA3 (ENSSTOG00000032343)	PPM1J (ENSSTOG00000015975)	ENSSTOG00000022123 ##22	ENSSTOG00000015963	ENSSTOG00000015956	WNT2B (ENSSTOG00000011442)	ST7L (ENSSTOG00000020270)	CTTNBP2NL (ENSSTOG00000011437)	KCND3 (ENSSTOG00000001773)	DDX20 (ENSSTOG00000029089)	INKA2 (ENSSTOG00000001760)	RAP1A (ENSSTOG00000027847)	ADORA3 (ENSSTOG00000025181)	ENSSTOG00000000483	ENSSTOG00000028567	ENSSTOG00000007630	WDR77 (ENSSTOG00000025877)	OVGP1 (ENSSTOG00000023994)
Alpin marmot	MODERN SPECIES	79	SYT6 (ENSMMMG00000013385)	OLFML3 (ENSMMMG00000013370)	ENSMMMG00000013352	DCLRE1B (ENSMMMG00000013332)	AP4B1 (ENSMMMG00000013063)	BCL2L15 (ENSMMMG00000013046)	PTPN22 (ENSMMMG00000013024)	RSBN1 (ENSMMMG00000013010)	PHTF1 (ENSMMMG00000012813)	MAGI3 (ENSMMMG00000012706)	LRIG2 (ENSMMMG00000012626)	SLC16A1 (ENSMMMG00000012618)	ENSMMMG00000012321	ENSMMMG00000012316	ENSMMMG00000012304	ENSMMMG00000012297 ##22	MOV10 (ENSMMMG00000012241)	CAPZA1 (ENSMMMG00000012224)	ST7L (ENSMMMG00000012123)	WNT2B (ENSMMMG00000012112)	CTTNBP2NL (ENSMMMG00000012103)	KCND3 (ENSMMMG00000012044)	DDX20 (ENSMMMG00000012030)	INKA2 (ENSMMMG00000012022)	RAP1A (ENSMMMG00000012006)	ADORA3 (ENSMMMG00000011975)	ENSMMMG00000011967	C1orf162 (ENSMMMG00000011956)	ENSMMMG00000011946	WDR77 (ENSMMMG00000011929)	ENSMMMG00000011629
Marmotini	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.a.r ##22
Alpin marmot	MODERN SPECIES	198														ENSMMMG00000005926	ENSMMMG00000005913	ENSMMMG00000005902 ##22
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.a.r ##22
Squirrel	MODERN SPECIES	672																ENSSTOG00000032123 ##22
Atlantogenata	ANCESTRAL SPECIES	26	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Xenarthra	ANCESTRAL SPECIES	239															ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00940000159166	ENSGT00390000000873.a.a	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711
Armadillo	MODERN SPECIES	3108															PPM1J (ENSDNOG00000017928)	RHOC (ENSDNOG00000012825) ##22	MOV10 (ENSDNOG00000007631)	ENSDNOG00000036861	WNT2B (ENSDNOG00000001790)	ST7L (ENSDNOG00000036591)	CTTNBP2NL (ENSDNOG00000043863)	ENSDNOG00000003964	ENSDNOG00000049590	DDX20 (ENSDNOG00000030865)	INKA2 (ENSDNOG00000043204)	RAP1A (ENSDNOG00000007809)	TMIGD3 (ENSDNOG00000004748)	ENSDNOG00000002467	ENSDNOG00000031419	ENSDNOG00000046177
Afrotheria	ANCESTRAL SPECIES	31	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Tenrec	MODERN SPECIES	3861																RHOC (ENSETEG00000002399) ##22	MOV10 (ENSETEG00000002395)	CAPZA1 (ENSETEG00000002390)	ENSETEG00000002388	ST7L (ENSETEG00000002385)	WNT2B (ENSETEG00000002381)	CTTNBP2NL (ENSETEG00000002378)
Afrotheria_a	ANCESTRAL SPECIES	31	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955.f	ENSGT00940000154955.e.b	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000015005	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223
Elephant	MODERN SPECIES	26	OLFML3 (ENSLAFG00000008070)	HIPK1 (ENSLAFG00000008067)	DCLRE1B (ENSLAFG00000008062)	AP4B1 (ENSLAFG00000008056)	BCL2L15 (ENSLAFG00000008055)	PTPN22 (ENSLAFG00000008050)	RSBN1 (ENSLAFG00000008049)	PHTF1 (ENSLAFG00000008042)	MAGI3 (ENSLAFG00000008032)	ENSLAFG00000029115	LRIG2 (ENSLAFG00000022642)	ENSLAFG00000027758	SLC16A1 (ENSLAFG00000012938)	TAFA3 (ENSLAFG00000011245)	PPM1J (ENSLAFG00000013073)	RHOC (ENSLAFG00000030194) ##22	MOV10 (ENSLAFG00000000239)	CAPZA1 (ENSLAFG00000000238)	ST7L (ENSLAFG00000000234)	WNT2B (ENSLAFG00000022115)	CTTNBP2NL (ENSLAFG00000023083)	KCND3 (ENSLAFG00000014648)	DDX20 (ENSLAFG00000014646)	INKA2 (ENSLAFG00000029670)	RAP1A (ENSLAFG00000000086)	ADORA3 (ENSLAFG00000004812)	ENSLAFG00000027080	C1orf162 (ENSLAFG00000004811)	ATP5PB (ENSLAFG00000004809)	WDR77 (ENSLAFG00000004805)	ENSLAFG00000017713
Hyrax	MODERN SPECIES	2427														ENSPCAG00000004020	PPM1J (ENSPCAG00000003961)	RHOC (ENSPCAG00000003910) ##22	MOV10 (ENSPCAG00000003786)	CAPZA1 (ENSPCAG00000003707)	ST7L (ENSPCAG00000003628)	WNT2B (ENSPCAG00000003591)
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223	ENSGT00940000163644
Opossum	MODERN SPECIES	1	DENND2C (ENSMODG00000000348)	BCAS2 (ENSMODG00000000367)	TRIM33 (ENSMODG00000000443)	SYT6 (ENSMODG00000000628)	HIPK1 (ENSMODG00000000665)	DCLRE1B (ENSMODG00000000672)	AP4B1 (ENSMODG00000000699)	BCL2L15 (ENSMODG00000000706)	ENSMODG00000000719	RSBN1 (ENSMODG00000000742)	PHTF1 (ENSMODG00000000803)	MAGI3 (ENSMODG00000000874)	LRIG2 (ENSMODG00000000908)	SLC16A1 (ENSMODG00000000929)	ENSMODG00000027725	RHOC (ENSMODG00000000981) ##22	MOV10 (ENSMODG00000001008)	CAPZA1 (ENSMODG00000036946)	ST7L (ENSMODG00000001162)	WNT2B (ENSMODG00000001196)	CTTNBP2NL (ENSMODG00000040523)	KCND3 (ENSMODG00000001282)	DDX20 (ENSMODG00000001311)	INKA2 (ENSMODG00000038120)	ENSMODG00000001323	ENSMODG00000049351	ADORA3 (ENSMODG00000046968)	ATP5PB (ENSMODG00000001351)	WDR77 (ENSMODG00000001364)	ENSMODG00000001338	ENSMODG00000001372
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b.e	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223	ENSGT00940000163644
Diprotodontia	ANCESTRAL SPECIES	5	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b.e	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223	ENSGT00940000163644
Diprotodontia_a	ANCESTRAL SPECIES	6	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b.e	ENSGT00940000156496	ENSGT00940000158791	ENSGT00940000154955	ENSGT00940000155644	ENSGT00940000160965	ENSGT00950000182945.b.a.a.b.a ##22	ENSGT00940000156024	ENSGT00950000183119.a.e.a	ENSGT00390000000873.a.a	ENSGT00940000159166	ENSGT00950000182852.B	ENSGT00940000155343	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000160251	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00930000151073	ENSGT00390000001958	ENSGT00390000010711	ENSGT00940000162223	ENSGT00940000163644
Common wonbat	MODERN SPECIES	920	TRIM33 (ENSVURG00010006426)	SYT6 (ENSVURG00010007358)	OLFML3 (ENSVURG00010007443)	HIPK1 (ENSVURG00010007473)	DCLRE1B (ENSVURG00010007535)	AP4B1 (ENSVURG00010007547)	BCL2L15 (ENSVURG00010007567)	PTPN22 (ENSVURG00010007583)	RSBN1 (ENSVURG00010007620)	ENSVURG00010007649	MAGI3 (ENSVURG00010007775)	LRIG2 (ENSVURG00010008184)	SLC16A1 (ENSVURG00010008207)	TAFA3 (ENSVURG00010008220)	PPM1J (ENSVURG00010008231)	RHOC (ENSVURG00010008254) ##22	MOV10 (ENSVURG00010008273)	ENSVURG00010008322	ST7L (ENSVURG00010008340)	WNT2B (ENSVURG00010008584)	CTTNBP2NL (ENSVURG00010008595)	KCND3 (ENSVURG00010008613)	DDX20 (ENSVURG00010008652)	INKA2 (ENSVURG00010008763)	RAP1A (ENSVURG00010008769)	TMIGD3 (ENSVURG00010008780)	ATP5PB (ENSVURG00010008809)	WDR77 (ENSVURG00010008840)	ENSVURG00010008853	ENSVURG00010008862	ENSVURG00010008873
Wallaby	DUPLICATION
Wallaby	MODERN SPECIES	6081														ENSMEUG00000004834	PPM1J (ENSMEUG00000004820)	ENSMEUG00000004807 ##22	MOV10 (ENSMEUG00000004776)
Wallaby	MODERN SPECIES	10660																ENSMEUG00000006964 ##22
Platypus	MODERN SPECIES	18	AMPD1 (ENSOANG00000004517)	DENND2C (ENSOANG00000004516)	ENSOANG00000004515	TRIM33 (ENSOANG00000004514)	SYT6 (ENSOANG00000041111)	OLFML3 (ENSOANG00000045486)	HIPK1 (ENSOANG00000050845)	AP4B1 (ENSOANG00000002999)	PTPN22 (ENSOANG00000002998)	RSBN1 (ENSOANG00000002642)	MAGI3 (ENSOANG00000002645)	LRIG2 (ENSOANG00000002648)	SLC16A1 (ENSOANG00000036530)	TAFA3 (ENSOANG00000002614)	PPM1J (ENSOANG00000002615)	RHOC (ENSOANG00000047237) ##22	MOV10 (ENSOANG00000022581)	CAPZA1 (ENSOANG00000039310)	ST7L (ENSOANG00000013889)	WNT2B (ENSOANG00000007583)	CTTNBP2NL (ENSOANG00000047002)	KCND3 (ENSOANG00000044751)	ENSOANG00000040432	ENSOANG00000043615	INKA2 (ENSOANG00000044025)	RAP1A (ENSOANG00000043174)	ADORA3 (ENSOANG00000004236)	ATP5PB (ENSOANG00000002019)	WDR77 (ENSOANG00000002018)	ENSOANG00000036517	ENSOANG00000050013
Elephant shark	MODERN SPECIES	3015																ENSCMIG00000004247 ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182945.b.a.a.b.a ##22
Lamprey	MODERN SPECIES	3148																ENSPMAG00000000416 ##22	zgc:165507 (ENSPMAG00000000400)	kbtbd8 (ENSPMAG00000000396)	asl (ENSPMAG00000000373)	dhx34 (ENSPMAG00000000368)	ENSPMAG00000000367	BAP1 (ENSPMAG00000000365)