Lepidosauria ANCESTRAL SPECIES 19 ENSGT00940000158905 ENSGT00940000155943.a ENSGT00530000063948.b ENSGT00390000004930 ENSGT00970000193985 ENSGT00940000160497 ENSGT00950000183090.A ENSGT00940000156218 ENSGT00950000183105.B ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 #19 ENSGT00940000154555 #20 ENSGT00940000155347.a.b #21 ENSGT00940000157971 #22 ENSGT01000000214413.a #23 ENSGT01090000260003.a.b.b.a.a.a.b.a #24 ENSGT00940000154351 #25 ENSGT00550000074952 #26 ENSGT00940000158280 #27 ENSGT00940000160631 #28 ENSGT00940000160054 #29 ENSGT00390000005488 #30 ENSGT00950000182838.C #31 ENSGT00940000175727 ENSGT00390000003488.a.a #32 ENSGT00840000129915 ENSGT00940000158020 #33 ENSGT00390000000096.b.a #34 ENSGT00940000159303 #36 Episquamata ANCESTRAL SPECIES 9 ENSGT00390000008748.b ENSGT00940000157725 ENSGT00940000158086 ENSGT00390000006548.b #10 ENSGT00940000164099.a.b #11 ENSGT00940000155524 #12 ENSGT00940000156817 #13 ENSGT00940000156926 #14 ENSGT00940000154905 #15 ENSGT00390000014038 #16 ENSGT00940000159572 #17 ENSGT00390000008859.b.d #18 ENSGT00940000157573 #19 ENSGT00940000154555 #20 ENSGT00940000155347.a.b #21 ENSGT00940000157971 #22 ENSGT01000000214413.a #23 ENSGT01090000260003.a.b.b.a.a.a.b.a #24 ENSGT00940000154351 #25 ENSGT00550000074952 #26 ENSGT00940000158280 #27 ENSGT00940000160631 #28 ENSGT00940000160054 #29 ENSGT00390000005488 #30 ENSGT00950000182838.C #31 ENSGT00940000175727 ENSGT00390000003488.a.a #32 ENSGT00840000129915 ENSGT00940000158020 #33 ENSGT00390000000096.b.a #34 ENSGT00940000159303 #36 Laterata ANCESTRAL SPECIES 16 ENSGT00940000157725 ENSGT00940000158086 ENSGT00950000182812.F.b #9 ENSGT00390000006548.b #10 ENSGT00940000164099.a.b #11 ENSGT00940000155524 #12 ENSGT00940000156817 #13 ENSGT00940000156926 #14 ENSGT00940000154905 #15 ENSGT00390000014038 #16 ENSGT00940000159572 #17 ENSGT00390000008859.b.d #18 ENSGT00940000157573 #19 ENSGT00940000154555 #20 ENSGT00940000155347.a.b #21 ENSGT00940000157971 #22 ENSGT01000000214413.a #23 ENSGT01090000260003.a.b.b.a.a.a.b.a #24 ENSGT00940000154351 #25 ENSGT00550000074952 #26 ENSGT00940000158280 #27 ENSGT00940000160631 #28 ENSGT00940000160054 #29 ENSGT00390000005488 #30 ENSGT00950000182838.C #31 ENSGT00390000003488.a.a #32 ENSGT00840000129915 ENSGT00940000158020 #33 ENSGT00390000000096.b.a #34 ENSGT00940000159303 #36 ENSGT01030000234532.A.b Common wall lizard MODERN SPECIES 5 ENSPMRG00000015241 #7 ENSPMRG00000015243 #8 ENSPMRG00000015246 #9 RPS17 (ENSPMRG00000015254) #10 ENSPMRG00000015265 #11 CPEB1 (ENSPMRG00000015272) #12 AP3B2 (ENSPMRG00000015532) #13 NR2E3 (ENSPMRG00000017390) #14 MYO9A (ENSPMRG00000017442) #15 SENP8 (ENSPMRG00000017584) #16 GRAMD2A (ENSPMRG00000017590) #17 PKM (ENSPMRG00000017617) #18 ATOSA (ENSPMRG00000017681) #19 ARPP19 (ENSPMRG00000017689) #20 MYO5A (ENSPMRG00000018092) #21 MYO5C (ENSPMRG00000020906) #22 GNB5 (ENSPMRG00000022546) #23 BCL2L10 (ENSPMRG00000022559) #24 MAPK6 (ENSPMRG00000022564) #25 LEO1 (ENSPMRG00000022571) #26 ENSPMRG00000022575 #27 TMOD2 (ENSPMRG00000022582) #28 LYSMD2 (ENSPMRG00000022587) #29 SCG3 (ENSPMRG00000022597) #30 AP4E1 (ENSPMRG00000022643) #31 TNFAIP8L3 (ENSPMRG00000022686) #32 GLDN (ENSPMRG00000022697) #33 DMXL2 (ENSPMRG00000022800) #34 ENSPMRG00000022984 #35 SEMA6D (ENSPMRG00000023005) #36 ENSPMRG00000023034 #37 Argentine black and white tegu MODERN SPECIES 46 PEX11A (ENSSMRG00000022315) WDR93 (ENSSMRG00000022316) MINAR1 (ENSSMRG00000022317) MTHFS (ENSSMRG00000022318) BCL2A1 (ENSSMRG00000022319) ##24 CPEB1 (ENSSMRG00000022320) #12 AP3B2 (ENSSMRG00000022321) #13 NR2E3 (ENSSMRG00000022322) #14 MYO9A (ENSSMRG00000022323) #15 SENP8 (ENSSMRG00000022324) #16 GRAMD2A (ENSSMRG00000022325) #17 PKM (ENSSMRG00000022326) #18 ATOSA (ENSSMRG00000022327) #19 ARPP19 (ENSSMRG00000022328) #20 MYO5A (ENSSMRG00000022329) #21 MYO5C (ENSSMRG00000022330) #22 GNB5 (ENSSMRG00000022331) #23 ENSSMRG00000022332 #24 MAPK6 (ENSSMRG00000022333) #25 LEO1 (ENSSMRG00000022334) #26 TMOD3 (ENSSMRG00000022335) #27 TMOD2 (ENSSMRG00000022336) #28 LYSMD2 (ENSSMRG00000022337) #29 SCG3 (ENSSMRG00000022338) #30 AP4E1 (ENSSMRG00000022339) #31 TNFAIP8L3 (ENSSMRG00000022340) #32 CYP19A1 (ENSSMRG00000022341) GLDN (ENSSMRG00000022342) #33 DMXL2 (ENSSMRG00000022343) #34 SEMA6D (ENSSMRG00000022344) #36 SLC24A5 (ENSSMRG00000022346) Toxicofera ANCESTRAL SPECIES 15 ENSGT00390000005300 ENSGT00390000008748.b ENSGT00940000157725 ENSGT00940000158086 ENSGT00390000006548.b #10 ENSGT00940000155524 #12 ENSGT00940000156817 #13 ENSGT00940000156926 #14 ENSGT00940000154905 #15 ENSGT00390000014038 #16 ENSGT00940000159572 #17 ENSGT00390000008859.b.d #18 ENSGT00940000157573 #19 ENSGT00940000154555 #20 ENSGT00940000155347.a.b #21 ENSGT00940000157971 #22 ENSGT01000000214413.a #23 ENSGT01090000260003.a.b.b.a.a.a.b.a #24 ENSGT00940000154351 #25 ENSGT00550000074952 #26 ENSGT00940000158280 #27 ENSGT00940000160631 #28 ENSGT00940000160054 #29 ENSGT00390000005488 #30 ENSGT00950000182838.C #31 ENSGT00940000175727 ENSGT00390000003488.a.a #32 ENSGT00840000129915 ENSGT00940000158020 #33 ENSGT00390000000096.b.a #34 ENSGT00940000159303 #36 Elapidae ANCESTRAL SPECIES 12 ENSGT00390000008748.b ENSGT00940000157725 ENSGT00940000158086 ENSGT00950000182812.F.b #9 ENSGT00390000006548.b #10 ENSGT00940000155524 #12 ENSGT00940000156817 #13 ENSGT00940000156926 #14 ENSGT00940000154905 #15 ENSGT00390000014038 #16 ENSGT00940000159572 #17 ENSGT00390000008859.b.d #18 ENSGT00940000157573 #19 ENSGT00940000154555 #20 ENSGT00940000155347.a.b #21 ENSGT00940000157971 #22 ENSGT01000000214413.a #23 ENSGT01090000260003.a.b.b.a.a.a.b.a #24 ENSGT00940000154351 #25 ENSGT00550000074952 #26 ENSGT00940000158280 #27 ENSGT00940000160631 #28 ENSGT00940000160054 #29 ENSGT00390000005488 #30 ENSGT00950000182838.C #31 ENSGT00940000175727 ENSGT00390000003488.a.a #32 ENSGT00840000129915.q ENSGT00940000158020 #33 ENSGT00390000000096.b.a #34 ENSGT00940000159303 #36 Indian cobra MODERN SPECIES 14 ENSNNAG00000011856 RBPMS2 (ENSNNAG00000011929) ENSNNAG00000011963 #9 ENSNNAG00000011992 RPS17 (ENSNNAG00000012013) #10 ENSNNAG00000012149 ##8 CPEB1 (ENSNNAG00000012215) #12 AP3B2 (ENSNNAG00000012594) #13 NR2E3 (ENSNNAG00000016855) #14 MYO9A (ENSNNAG00000016912) #15 ENSNNAG00000016953 #17 PKM (ENSNNAG00000016964) #18 ATOSA (ENSNNAG00000016987) #19 ARPP19 (ENSNNAG00000017109) #20 MYO5A (ENSNNAG00000017325) #21 MYO5C (ENSNNAG00000018317) #22 ENSNNAG00000018565 #23 ENSNNAG00000018570 #23 ENSNNAG00000018575 #24 MAPK6 (ENSNNAG00000018578) #25 LEO1 (ENSNNAG00000018584) #26 TMOD3 (ENSNNAG00000018589) #27 TMOD2 (ENSNNAG00000018592) #28 LYSMD2 (ENSNNAG00000018597) #29 SCG3 (ENSNNAG00000018602) #30 AP4E1 (ENSNNAG00000018619) #31 TNFAIP8L3 (ENSNNAG00000018632) #32 ENSNNAG00000018635 ENSNNAG00000018638 ENSNNAG00000018641 #33 DMXL2 (ENSNNAG00000018652) #34 Elapidae_a ANCESTRAL SPECIES 17 ENSGT00390000008748.b.c ENSGT00940000157725 ENSGT00940000158086 ENSGT00950000182812.F.b #9 ENSGT00390000006548.b #10 ENSGT00940000155524 #12 ENSGT00940000156817 #13 ENSGT00940000156926 #14 ENSGT00940000154905 #15 ENSGT00390000014038 #16 ENSGT00940000159572 #17 ENSGT00390000008859.b.d #18 ENSGT00940000157573 #19 ENSGT00940000154555 #20 ENSGT00940000155347.a.b.a #21 ENSGT00940000157971 #22 ENSGT01000000214413.a #23 ENSGT01090000260003.a.b.b.a.a.a.b.a #24 ENSGT00940000154351 #25 ENSGT00550000074952 #26 ENSGT00940000158280 #27 ENSGT00940000160631 #28 ENSGT00940000160054 #29 ENSGT00390000005488 #30 ENSGT00950000182838.C #31 ENSGT00940000175727 ENSGT00390000003488.a.a #32 ENSGT00840000129915.q ENSGT00940000158020 #33 ENSGT00390000000096.b.a #34 ENSGT00940000159303 #36 Acanthophiinae ANCESTRAL SPECIES 17 ENSGT00390000005300 ENSGT00390000008748.b.c ENSGT00940000157725 ENSGT00940000158086 ENSGT00390000006548.b #10 ENSGT00940000155524 #12 ENSGT00940000156817 #13 ENSGT00940000156926 #14 ENSGT00940000154905 #15 ENSGT00390000014038 #16 ENSGT00940000159572 #17 ENSGT00390000008859.b.d #18 ENSGT00940000157573 #19 ENSGT00940000154555 #20 ENSGT00940000155347.a.b.a #21 ENSGT00940000157971 #22 ENSGT01000000214413.a #23 ENSGT01090000260003.a.b.b.a.a.a.b.a #24 ENSGT00940000154351 #25 ENSGT00550000074952 #26 ENSGT00940000158280 #27 ENSGT00940000160631 #28 ENSGT00940000160054 #29 ENSGT00390000005488 #30 ENSGT00950000182838.C #31 ENSGT00940000175727 ENSGT00390000003488.a.a #32 ENSGT00840000129915.q ENSGT00940000158020 #33 ENSGT00390000000096.b.a #34 ENSGT00940000159303 #36 Mainland tiger snake DUPLICATION Mainland tiger snake MODERN SPECIES 217 OAZ2 (ENSNSUG00000019491) RBPMS2 (ENSNSUG00000019490) ENSNSUG00000019489 #9 ENSNSUG00000019488 ##8 RPS17 (ENSNSUG00000019484) #10 CPEB1 (ENSNSUG00000019483) #12 AP3B2 (ENSNSUG00000019482) #13 NR2E3 (ENSNSUG00000019470) #14 MYO9A (ENSNSUG00000019466) #15 SENP8 (ENSNSUG00000019465) #16 GRAMD2A (ENSNSUG00000019464) #17 PKM (ENSNSUG00000019463) #18 ATOSA (ENSNSUG00000019462) #19 ARPP19 (ENSNSUG00000019461) #20 MYO5A (ENSNSUG00000019460) #21 ENSNSUG00000019459 #22 ENSNSUG00000019458 #22 ENSNSUG00000019457 #23 ENSNSUG00000019456 #23 ENSNSUG00000019455 #24 MAPK6 (ENSNSUG00000019454) #25 Mainland tiger snake MODERN SPECIES 217 RBPMS2 (ENSNSUG00000019490) ENSNSUG00000019489 #9 ENSNSUG00000019488 ##8 RPS17 (ENSNSUG00000019484) #10 CPEB1 (ENSNSUG00000019483) #12 AP3B2 (ENSNSUG00000019482) #13 NR2E3 (ENSNSUG00000019470) #14 MYO9A (ENSNSUG00000019466) #15 SENP8 (ENSNSUG00000019465) #16 GRAMD2A (ENSNSUG00000019464) #17 PKM (ENSNSUG00000019463) #18 ATOSA (ENSNSUG00000019462) #19 ARPP19 (ENSNSUG00000019461) #20 MYO5A (ENSNSUG00000019460) #21 ENSNSUG00000019459 #22 ENSNSUG00000019458 #22 ENSNSUG00000019457 #23 ENSNSUG00000019456 #23 ENSNSUG00000019455 #24 MAPK6 (ENSNSUG00000019454) #25 Eastern brown snake MODERN SPECIES 44 TRIP4 (ENSPTXG00000013263) ZNF609 (ENSPTXG00000013262) OAZ2 (ENSPTXG00000013261) RBPMS2 (ENSPTXG00000013260) RPS17 (ENSPTXG00000013255) #10 CPEB1 (ENSPTXG00000013254) #12 AP3B2 (ENSPTXG00000013253) #13 NR2E3 (ENSPTXG00000013235) #14 MYO9A (ENSPTXG00000013233) #15 SENP8 (ENSPTXG00000013232) #16 GRAMD2A (ENSPTXG00000013230) #17 PKM (ENSPTXG00000013229) #18 ATOSA (ENSPTXG00000013227) #19 ARPP19 (ENSPTXG00000013225) #20 MYO5A (ENSPTXG00000012559) #21 MYO5C (ENSPTXG00000011844) #22 GNB5 (ENSPTXG00000011841) #23 MAPK6 (ENSPTXG00000011840) #25 LEO1 (ENSPTXG00000011839) #26 TMOD3 (ENSPTXG00000011837) #27 ENSPTXG00000011836 #28 LYSMD2 (ENSPTXG00000011835) #29 SCG3 (ENSPTXG00000011834) #30 AP4E1 (ENSPTXG00000011833) #31 TNFAIP8L3 (ENSPTXG00000011832) #32 CYP19A1 (ENSPTXG00000011830) GLDN (ENSPTXG00000011825) #33 DMXL2 (ENSPTXG00000011822) #34 SEMA6D (ENSPTXG00000011819) #36 SLC24A5 (ENSPTXG00000011818) MYEF2 (ENSPTXG00000011816) Blue-lipped sea krait MODERN SPECIES 3791 MYO5C (ENSLLTG00000004751) #22 GNB5 (ENSLLTG00000004680) #23 ENSLLTG00000004662 #24 Lizard MODERN SPECIES 1091 ENSACAG00000012227 ENSACAG00000012225 #10 ENSACAG00000026968 #12 AP3B2 (ENSACAG00000011959) #13 NR2E3 (ENSACAG00000011910) #14 MYO9A (ENSACAG00000011552) #15 SENP8 (ENSACAG00000011545) #16 GRAMD2A (ENSACAG00000011536) #17 PKM (ENSACAG00000011445) #18 ATOSA (ENSACAG00000011388) #19 ARPP19 (ENSACAG00000023267) #20 MYO5A (ENSACAG00000010982) #21 MYO5C (ENSACAG00000029269) #22 GNB5 (ENSACAG00000010868) #23 tuatara MODERN SPECIES 1277 ENSSPUG00000004474 ENSSPUG00000004491 PRTG (ENSSPUG00000004500) PYGO1 (ENSSPUG00000004526) DNAAF4 (ENSSPUG00000004532) CCPG1 (ENSSPUG00000004549) PIGB (ENSSPUG00000004572) RAB27A (ENSSPUG00000004692) RSL24D1 (ENSSPUG00000004700) UNC13C (ENSSPUG00000004753) WDR72 (ENSSPUG00000004992) ONECUT1 (ENSSPUG00000005151) ATOSA (ENSSPUG00000005167) #19 ARPP19 (ENSSPUG00000005192) #20 MYO5A (ENSSPUG00000005207) #21 MYO5C (ENSSPUG00000005272) #22 ENSSPUG00000005326 #23 ENSSPUG00000005346 #23 BCL2L10 (ENSSPUG00000005368) #24 MAPK6 (ENSSPUG00000005374) #25 LEO1 (ENSSPUG00000005384) #26 ENSSPUG00000005398 #27 ENSSPUG00000005412 #28