Euteleostomi	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Amniota	ANCESTRAL SPECIES	1	ENSGT00940000157136 #19	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #34	ENSGT00940000160868 #33	ENSGT00940000157269.a.a #32	ENSGT00940000158299 #31	ENSGT00940000158614 #30	ENSGT00510000049722 #28	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00950000185082	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A	ENSGT00940000161541	ENSGT01030000234626.A.b
Mammalia	ANCESTRAL SPECIES	142																ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00950000185082	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27
Theria	ANCESTRAL SPECIES	75																ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00950000185082	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34
Eutheria	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00950000185466	ENSGT00940000158598 #24	ENSGT00950000185082	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105
Euarchontoglires	ANCESTRAL SPECIES	24	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00950000185466	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Euarchontoglires_A	ANCESTRAL SPECIES	25	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00950000185466	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Glires	ANCESTRAL SPECIES	26	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00950000185466	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b
Rodentia	ANCESTRAL SPECIES	21	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00950000185466	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105
Rodentia_B	ANCESTRAL SPECIES	24	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Kangaroo rat	MODERN SPECIES	393	Pinx1 (ENSDORG00000004065) #7	4930578I06Rik (ENSDORG00000011613) #8	Prss55 (ENSDORG00000000666) #9	ENSDORG00000028826 #10	ENSDORG00000030167 #11	Msra (ENSDORG00000004084) #12	Kif13b (ENSDORG00000015972) #13	Hmbox1 (ENSDORG00000015971) #14	Ints9 (ENSDORG00000008604) #15	Extl3 (ENSDORG00000011937) #16	Fzd3 (ENSDORG00000026500) #17	Fbxo16 (ENSDORG00000009764) #18	Zfp395 (ENSDORG00000005052) #19	Pnoc (ENSDORG00000005053) #20	Elp3 (ENSDORG00000012451) #21	Nuggc (ENSDORG00000012444) #22	Scara5 (ENSDORG00000010511) #23	Esco2 (ENSDORG00000014897) #24	Ccdc25 (ENSDORG00000006595) #25	Scara3 (ENSDORG00000015368) #26	Clu (ENSDORG00000010249) #27	Gulo (ENSDORG00000024023) #28	Adam2 (ENSDORG00000002055) #29	Ephx2 (ENSDORG00000010204) #30	Chrna2 (ENSDORG00000010203) #31	Ptk2b (ENSDORG00000010200) #32	Trim35 (ENSDORG00000010264) #33	Stmn4 (ENSDORG00000010266) #34
Myomorpha	ANCESTRAL SPECIES	29	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Muroidea	ANCESTRAL SPECIES	26	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Cricetinae	ANCESTRAL SPECIES	18	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Chinese hamster chok1gshd	MODERN SPECIES	3	4930578I06Rik (ENSCGRG00001002855) #8	Rp1l1 (ENSCGRG00001000883)	Prss55 (ENSCGRG00001012725) #9	Prss51 (ENSCGRG00001017289) ##9	Prss52 (ENSCGRG00001022178)	Msra (ENSCGRG00001014400) #12	Kif13b (ENSCGRG00001002755) #13	Hmbox1 (ENSCGRG00001006124) #14	Ints9 (ENSCGRG00001024549) #15	Extl3 (ENSCGRG00001009621) #16	Fzd3 (ENSCGRG00001017329) #17	Fbxo16 (ENSCGRG00001016357) #18	Zfp395 (ENSCGRG00001018152) #19	Pnoc (ENSCGRG00001020999) #20	Elp3 (ENSCGRG00001002047) #21	Nuggc (ENSCGRG00001024841) #22	Scara5 (ENSCGRG00001004427) #23	Pbk (ENSCGRG00001007773)	Esco2 (ENSCGRG00001016894) #24	Ccdc25 (ENSCGRG00001014249) #25	Scara3 (ENSCGRG00001018699) #26	Clu (ENSCGRG00001021841) #27	Gulo (ENSCGRG00001019987) #28	Adam2 (ENSCGRG00001012300) #29	Ephx2 (ENSCGRG00001003555) #30	ENSCGRG00001003198	Chrna2 (ENSCGRG00001025060) #31	Ptk2b (ENSCGRG00001013042) #32	Trim35 (ENSCGRG00001019610) #33	ENSCGRG00001009280	Stmn4 (ENSCGRG00001008937) #34
Golden Hamster	MODERN SPECIES	670	4930578I06Rik (ENSMAUG00000015281) #8	Rp1l1 (ENSMAUG00000006210)	Prss55 (ENSMAUG00000003349) #9	Prss51 (ENSMAUG00000019793) ##9	Prss52 (ENSMAUG00000020307)	Msra (ENSMAUG00000002110) #12	Kif13b (ENSMAUG00000016652) #13	Hmbox1 (ENSMAUG00000017893) #14	Ints9 (ENSMAUG00000016286) #15	Extl3 (ENSMAUG00000013025) #16	Fzd3 (ENSMAUG00000020808) #17	Fbxo16 (ENSMAUG00000014801) #18	ENSMAUG00000019639 #19	Pnoc (ENSMAUG00000005940) #20	Elp3 (ENSMAUG00000013672) #21	Nuggc (ENSMAUG00000014486) #22	Scara5 (ENSMAUG00000012698) #23	Pbk (ENSMAUG00000000786)	Esco2 (ENSMAUG00000018840) #24	Ccdc25 (ENSMAUG00000018478) #25	Scara3 (ENSMAUG00000008370) #26	Clu (ENSMAUG00000001027) #27	Gulo (ENSMAUG00000013257) #28	Adam2 (ENSMAUG00000021964) #29	Ephx2 (ENSMAUG00000010745) #30	Chrna2 (ENSMAUG00000009044) #31	Ptk2b (ENSMAUG00000018808) #32	Trim35 (ENSMAUG00000010808) #33	Stmn4 (ENSMAUG00000012567) #34	Adra1a (ENSMAUG00000019248)	Dpysl2 (ENSMAUG00000006007)
Murinae	ANCESTRAL SPECIES	16	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Mus	ANCESTRAL SPECIES	8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT01030000234551.k.d.a.c #10	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT00860000136174
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT00860000136174
Mouse	MODERN SPECIES	5	4930578I06Rik (ENSMUSG00000021961) #8	Rp1l1 (ENSMUSG00000046049)	Prss55 (ENSMUSG00000034623) #9	Prss51 (ENSMUSG00000052099) ##9	Prss52 (ENSMUSG00000021966)	Msra (ENSMUSG00000054733) #12	Kif13b (ENSMUSG00000060012) #13	Hmbox1 (ENSMUSG00000021972) #14	Ints9 (ENSMUSG00000021975) #15	Extl3 (ENSMUSG00000021978) #16	Fzd3 (ENSMUSG00000007989) #17	Fbxo16 (ENSMUSG00000034532) #18	Zfp395 (ENSMUSG00000034522) #19	Pnoc (ENSMUSG00000045731) #20	Elp3 (ENSMUSG00000022031) #21	Nuggc (ENSMUSG00000061356) #22	Scara5 (ENSMUSG00000022032) #23	Pbk (ENSMUSG00000022033)	Esco2 (ENSMUSG00000022034) #24	Ccdc25 (ENSMUSG00000022035) #25	Scara3 (ENSMUSG00000034463) #26	Clu (ENSMUSG00000022037) #27	Gulo (ENSMUSG00000034450) #28	Adam2 (ENSMUSG00000022039) #29	Ephx2 (ENSMUSG00000022040) #30	Chrna2 (ENSMUSG00000022041) #31	Ptk2b (ENSMUSG00000059456) #32	Trim35 (ENSMUSG00000022043) #33	Stmn4 (ENSMUSG00000022044) #34	Adra1a (ENSMUSG00000045875)	Dpysl2 (ENSMUSG00000022048)
Ryukyu mouse	MODERN SPECIES	5	4930578I06Rik (MGP_CAROLIEiJ_G0019411) #8	Rp1l1 (MGP_CAROLIEiJ_G0019412)	Prss55 (MGP_CAROLIEiJ_G0019413) #9	MGP_CAROLIEiJ_G0019414 #10	Prss52 (MGP_CAROLIEiJ_G0019415)	Msra (MGP_CAROLIEiJ_G0019416) #12	Kif13b (MGP_CAROLIEiJ_G0019417) #13	Hmbox1 (MGP_CAROLIEiJ_G0019418) #14	Ints9 (MGP_CAROLIEiJ_G0019419) #15	Extl3 (MGP_CAROLIEiJ_G0019420) #16	Fzd3 (MGP_CAROLIEiJ_G0019421) #17	Fbxo16 (MGP_CAROLIEiJ_G0019422) #18	Zfp395 (MGP_CAROLIEiJ_G0019423) #19	Pnoc (MGP_CAROLIEiJ_G0019424) #20	Elp3 (MGP_CAROLIEiJ_G0019425) #21	Nuggc (MGP_CAROLIEiJ_G0019426) #22	Scara5 (MGP_CAROLIEiJ_G0019427) #23	Pbk (MGP_CAROLIEiJ_G0019428)	Esco2 (MGP_CAROLIEiJ_G0019429) #24	Ccdc25 (MGP_CAROLIEiJ_G0019430) #25	Scara3 (MGP_CAROLIEiJ_G0019431) #26	Clu (MGP_CAROLIEiJ_G0019432) #27	Gulo (MGP_CAROLIEiJ_G0019433) #28	Adam2 (MGP_CAROLIEiJ_G0019434) #29	Ephx2 (MGP_CAROLIEiJ_G0019435) #30	Chrna2 (MGP_CAROLIEiJ_G0019436) #31	Ptk2b (MGP_CAROLIEiJ_G0019437) #32	Trim35 (MGP_CAROLIEiJ_G0019438) #33	Stmn4 (MGP_CAROLIEiJ_G0019439) #34	Adra1a (MGP_CAROLIEiJ_G0019440)	MGP_CAROLIEiJ_G0019441
Upper Galilee mountains blind mole rat	MODERN SPECIES	589	4930578I06Rik (ENSNGAG00000009966) #8	Prss55 (ENSNGAG00000011795) #9	ENSNGAG00000021775 #10	Prss52 (ENSNGAG00000023654)	Msra (ENSNGAG00000017348) #12	ENSNGAG00000010801	Kif13b (ENSNGAG00000018729) #13	Hmbox1 (ENSNGAG00000022905) #14	Ints9 (ENSNGAG00000024198) #15	Extl3 (ENSNGAG00000020413) #16	Fzd3 (ENSNGAG00000018670) #17	Fbxo16 (ENSNGAG00000012031) #18	Zfp395 (ENSNGAG00000004006) #19	Pnoc (ENSNGAG00000013397) #20	Elp3 (ENSNGAG00000004373) #21	Nuggc (ENSNGAG00000022052) #22	Scara5 (ENSNGAG00000006829) #23	Pbk (ENSNGAG00000023879)	Esco2 (ENSNGAG00000013208) #24	Ccdc25 (ENSNGAG00000018920) #25	Scara3 (ENSNGAG00000023203) #26	Clu (ENSNGAG00000013029) #27	Gulo (ENSNGAG00000024191) #28	Adam2 (ENSNGAG00000005586) #29	Ephx2 (ENSNGAG00000022968) #30	Chrna2 (ENSNGAG00000023099) #31	Ptk2b (ENSNGAG00000023988) #32	Trim35 (ENSNGAG00000023890) #33	Stmn4 (ENSNGAG00000019172) #34
Lesser Egyptian jerboa	MODERN SPECIES	125										ENSJJAG00000010971	ENSJJAG00000003893	Syt4 (ENSJJAG00000022564)	Rit2 (ENSJJAG00000021302)	ENSJJAG00000018157	Pik3c3 (ENSJJAG00000000136)	Nuggc (ENSJJAG00000020439) #22	Scara5 (ENSJJAG00000015781) #23	ENSJJAG00000013978	Esco2 (ENSJJAG00000016831) #24	ENSJJAG00000016351 #25	Scara3 (ENSJJAG00000015535) #26	Clu (ENSJJAG00000011133) #27	Gulo (ENSJJAG00000008997) #28	Adam2 (ENSJJAG00000021729) #29	Ephx2 (ENSJJAG00000021412) #30	Chrna2 (ENSJJAG00000018111) #31	Ptk2b (ENSJJAG00000013115) #32	Trim35 (ENSJJAG00000011832) #33	ENSJJAG00000011170	Stmn4 (ENSJJAG00000010283) #34	Adra1a (ENSJJAG00000008597)
Rodentia_A	ANCESTRAL SPECIES	21	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00950000185466	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105
Sciuridae	ANCESTRAL SPECIES	29	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00950000185466	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105
Marmotini	ANCESTRAL SPECIES	30	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.c	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Marmotini_b	ANCESTRAL SPECIES	138	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.c	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34
Squirrel	MODERN SPECIES	275	ENSSTOG00000021185	PRSS55 (ENSSTOG00000011728) #9	ENSSTOG00000034166 #10	ENSSTOG00000025120	MSRA (ENSSTOG00000024714) #12	ENSSTOG00000033697	KIF13B (ENSSTOG00000004778) #13	HMBOX1 (ENSSTOG00000004762) #14	INTS9 (ENSSTOG00000011703) #15	EXTL3 (ENSSTOG00000019391) #16	FZD3 (ENSSTOG00000011064) #17	FBXO16 (ENSSTOG00000029192) #18	ZNF395 (ENSSTOG00000001396) #19	PNOC (ENSSTOG00000001392) #20	ELP3 (ENSSTOG00000000508) #21	NUGGC (ENSSTOG00000000498) #22	SCARA5 (ENSSTOG00000000496) #23	PBK (ENSSTOG00000028798)	ESCO2 (ENSSTOG00000000493) #24	CCDC25 (ENSSTOG00000000490) #25	SCARA3 (ENSSTOG00000023922) #26	CLU (ENSSTOG00000026703) #27	ENSSTOG00000026329 #28	ADAM2 (ENSSTOG00000011994) #29	ENSSTOG00000004408	EPHX2 (ENSSTOG00000010872) #30	CHRNA2 (ENSSTOG00000016060) #31	PTK2B (ENSSTOG00000009205) #32	TRIM35 (ENSSTOG00000020486) #33	STMN4 (ENSSTOG00000007200) #34
Arctic ground squirrel	MODERN SPECIES	203	ENSUPAG00010003314	ENSUPAG00010003330 #9	PRSS51 (ENSUPAG00010003337) ##9	ENSUPAG00010003355	MSRA (ENSUPAG00010003365) #12	KIF13B (ENSUPAG00010003395) #13	HMBOX1 (ENSUPAG00010003528) #14	INTS9 (ENSUPAG00010003602) #15	EXTL3 (ENSUPAG00010003630) #16	FZD3 (ENSUPAG00010003648) #17	FBXO16 (ENSUPAG00010003660) #18	ENSUPAG00010003704	ZNF395 (ENSUPAG00010003708) #19	PNOC (ENSUPAG00010003731) #20	ELP3 (ENSUPAG00010003737) #21	NUGGC (ENSUPAG00010003759) #22	SCARA5 (ENSUPAG00010003795) #23	PBK (ENSUPAG00010003803)	ESCO2 (ENSUPAG00010003820) #24	CCDC25 (ENSUPAG00010003839) #25	SCARA3 (ENSUPAG00010003867) #26	CLU (ENSUPAG00010003882) #27	ENSUPAG00010003895 #28	ADAM2 (ENSUPAG00010003911) #29	EPHX2 (ENSUPAG00010003940) #30	ENSUPAG00010004106 #32	TRIM35 (ENSUPAG00010004126) #33	STMN4 (ENSUPAG00010004143) #34
Alpin marmot	MODERN SPECIES	61	ENSMMMG00000012429 #9	PRSS51 (ENSMMMG00000012438) ##9	ENSMMMG00000012451	MSRA (ENSMMMG00000012458) #12	ENSMMMG00000012470	KIF13B (ENSMMMG00000012474) #13	HMBOX1 (ENSMMMG00000012513) #14	INTS9 (ENSMMMG00000012520) #15	EXTL3 (ENSMMMG00000012868) #16	FZD3 (ENSMMMG00000012893) #17	ENSMMMG00000012897	FBXO16 (ENSMMMG00000012903) #18	ZNF395 (ENSMMMG00000012939) #19	PNOC (ENSMMMG00000012949) #20	ELP3 (ENSMMMG00000012964) #21	NUGGC (ENSMMMG00000012992) #22	SCARA5 (ENSMMMG00000013022) #23	ENSMMMG00000013030	ESCO2 (ENSMMMG00000013045) #24	CCDC25 (ENSMMMG00000013061) #25	SCARA3 (ENSMMMG00000013090) #26	CLU (ENSMMMG00000013091) #27	ENSMMMG00000013102 #28	ADAM2 (ENSMMMG00000013126) #29	EPHX2 (ENSMMMG00000013154) #30	ENSMMMG00000013222 #31	PTK2B (ENSMMMG00000013250) #32	ENSMMMG00000013471 #33	STMN4 (ENSMMMG00000013482) #34	ADRA1A (ENSMMMG00000013560)	DPYSL2 (ENSMMMG00000013573)
Eurasian red squirrel	MODERN SPECIES	14	C8orf74 (ENSSVLG00005006760) #8	ENSSVLG00005006804	PRSS55 (ENSSVLG00005000180) #9	PRSS51 (ENSSVLG00005000208) ##9	ENSSVLG00005000266 #11	MSRA (ENSSVLG00005000328) #12	KIF13B (ENSSVLG00005000912) #13	HMBOX1 (ENSSVLG00005001517) #14	INTS9 (ENSSVLG00005001565) #15	EXTL3 (ENSSVLG00005001634) #16	FZD3 (ENSSVLG00005001660) #17	FBXO16 (ENSSVLG00005001709) #18	ZNF395 (ENSSVLG00005001763) #19	PNOC (ENSSVLG00005001784) #20	ELP3 (ENSSVLG00005001840) #21	NUGGC (ENSSVLG00005001962) #22	SCARA5 (ENSSVLG00005002024) #23	PBK (ENSSVLG00005002075)	ENSSVLG00005002097	ESCO2 (ENSSVLG00005002121) #24	CCDC25 (ENSSVLG00005002167) #25	SCARA3 (ENSSVLG00005002219) #26	CLU (ENSSVLG00005002257) #27	ENSSVLG00005002289 #28	ADAM2 (ENSSVLG00005002341) #29	EPHX2 (ENSSVLG00005002467) #30	CHRNA2 (ENSSVLG00005002577) #31	PTK2B (ENSSVLG00005002627) #32	ENSSVLG00005002776	TRIM35 (ENSSVLG00005002788) #33	STMN4 (ENSSVLG00005002831) #34
Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT00940000161092	ENSGT00940000154323.b #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.p #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT00940000161092	ENSGT00940000154323.b #8	ENSGT00940000156020.b.a #9	ENSGT01030000234551.k.d.a.c #10	ENSGT00940000156020.a #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.p #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Guinea pig	MODERN SPECIES	1	ENSCPOG00000006054	NEIL2 (ENSCPOG00000006058)	FDFT1 (ENSCPOG00000007700)	CTSB (ENSCPOG00000009125)	DEFB136 (ENSCPOG00000000541)	ENSCPOG00000005487	ENSCPOG00000020935	ENSCPOG00000026053	ENSCPOG00000039861	ENSCPOG00000030429	ENSCPOG00000000422	ENSCPOG00000014840	ZNF395 (ENSCPOG00000003689) #19	PNOC (ENSCPOG00000006646) #20	ELP3 (ENSCPOG00000003742) #21	NUGGC (ENSCPOG00000003741) #22	SCARA5 (ENSCPOG00000023428) #23	PBK (ENSCPOG00000010826)	ESCO2 (ENSCPOG00000024189) #24	CCDC25 (ENSCPOG00000038303) #25	SCARA3 (ENSCPOG00000034540) #26	CLU (ENSCPOG00000019546) #27	ADAM2 (ENSCPOG00000022133) #29	EPHX2 (ENSCPOG00000037609) #30	CHRNA2 (ENSCPOG00000038123) #31	PTK2B (ENSCPOG00000004602) #32	TRIM35 (ENSCPOG00000032287) #33	STMN4 (ENSCPOG00000005528) #34	ADRA1A (ENSCPOG00000038399)	DPYSL2 (ENSCPOG00000025679)	BNIP3L (ENSCPOG00000034680)
Hystricomorpha_b	ANCESTRAL SPECIES	30	ENSGT00940000161092	ENSGT00940000154323.b #8	ENSGT00940000156020.b.a #9	ENSGT01030000234551.k.d.a.c #10	ENSGT00940000156020.a #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.p #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000161961 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Degu	MODERN SPECIES	77	ENSODEG00000008517 #11	MSRA (ENSODEG00000008050) #12	ENSODEG00000019405	KIF13B (ENSODEG00000009358) #13	HMBOX1 (ENSODEG00000009907) #14	ENSODEG00000019625	INTS9 (ENSODEG00000007631) #15	EXTL3 (ENSODEG00000008663) #16	ENSODEG00000008198	ENSODEG00000019437	FZD3 (ENSODEG00000008946) #17	FBXO16 (ENSODEG00000008057) #18	ZNF395 (ENSODEG00000007787) #19	PNOC (ENSODEG00000007324) #20	ELP3 (ENSODEG00000008983) #21	NUGGC (ENSODEG00000007232) #22	SCARA5 (ENSODEG00000007378) #23	PBK (ENSODEG00000009607)	ESCO2 (ENSODEG00000010631) #24	CCDC25 (ENSODEG00000007236) #25	SCARA3 (ENSODEG00000007451) #26	CLU (ENSODEG00000007758) #27	ENSODEG00000012794 #28	ADAM2 (ENSODEG00000008302) #29	EPHX2 (ENSODEG00000007405) #30	CHRNA2 (ENSODEG00000008004) #31	PTK2B (ENSODEG00000009950) #32	TRIM35 (ENSODEG00000008434) #33	STMN4 (ENSODEG00000006658) #34	ENSODEG00000010902	ADRA1A (ENSODEG00000007554)
Long-tailed chinchilla	MODERN SPECIES	110	SOX7 (ENSCLAG00000014320)	C8orf74 (ENSCLAG00000016673) #8	PRSS55 (ENSCLAG00000015325) #9	ENSCLAG00000016541 #10	ENSCLAG00000015445 #11	MSRA (ENSCLAG00000016097) #12	KIF13B (ENSCLAG00000014088) #13	ENSCLAG00000014654 #14	INTS9 (ENSCLAG00000015789) #15	EXTL3 (ENSCLAG00000016016) #16	FZD3 (ENSCLAG00000015263) #17	FBXO16 (ENSCLAG00000017107) #18	ZNF395 (ENSCLAG00000015098) #19	PNOC (ENSCLAG00000013995) #20	ELP3 (ENSCLAG00000016550) #21	NUGGC (ENSCLAG00000014640) #22	SCARA5 (ENSCLAG00000015896) #23	PBK (ENSCLAG00000014953)	ESCO2 (ENSCLAG00000017015) #24	CCDC25 (ENSCLAG00000013927) #25	SCARA3 (ENSCLAG00000016246) #26	CLU (ENSCLAG00000014457) #27	ENSCLAG00000014336 #28	ADAM2 (ENSCLAG00000014916) #29	EPHX2 (ENSCLAG00000014569) #30	CHRNA2 (ENSCLAG00000016813) #31	PTK2B (ENSCLAG00000015285) #32	TRIM35 (ENSCLAG00000014327) #33	STMN4 (ENSCLAG00000014584) #34	ADRA1A (ENSCLAG00000014689)	DPYSL2 (ENSCLAG00000015960)
Naked mole-rat female	MODERN SPECIES	25	SOX7 (ENSHGLG00000007410)	ENSHGLG00000006715 #8	PRSS55 (ENSHGLG00000005245) #9	PRSS51 (ENSHGLG00000005119) ##9	ENSHGLG00000008586	ENSHGLG00000006978 #12	ENSHGLG00000004739 #13	HMBOX1 (ENSHGLG00000008466) #14	INTS9 (ENSHGLG00000005379) #15	EXTL3 (ENSHGLG00000004822) #16	FZD3 (ENSHGLG00000015551) #17	FBXO16 (ENSHGLG00000014834) #18	ZNF395 (ENSHGLG00000017520) #19	PNOC (ENSHGLG00000043429) #20	ELP3 (ENSHGLG00000004990) #21	NUGGC (ENSHGLG00000015007) #22	SCARA5 (ENSHGLG00000013223) #23	PBK (ENSHGLG00000018426)	ESCO2 (ENSHGLG00000008587) #24	CCDC25 (ENSHGLG00000007627) #25	SCARA3 (ENSHGLG00000006976) #26	Clu (ENSHGLG00000033946) #27	ENSHGLG00000004501 #28	ENSHGLG00000045036	ADAM2 (ENSHGLG00000007670) #29	EPHX2 (ENSHGLG00000005581) #30	CHRNA2 (ENSHGLG00000004833) #31	PTK2B (ENSHGLG00000015272) #32	TRIM35 (ENSHGLG00000034100) #33	STMN4 (ENSHGLG00000016773) #34	ENSHGLG00000045878
Lagomorpha	ANCESTRAL SPECIES	60	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000156020.a #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a
Rabbit	MODERN SPECIES	11	C8orf74 (ENSOCUG00000015568) #8	ENSOCUG00000010566	PRSS55 (ENSOCUG00000012405) #9	ENSOCUG00000035787 ##9	ENSOCUG00000023048 #11	MSRA (ENSOCUG00000003370) #12	KIF13B (ENSOCUG00000005942) #13	HMBOX1 (ENSOCUG00000017211) #14	INTS9 (ENSOCUG00000015356) #15	EXTL3 (ENSOCUG00000015351) #16	FZD3 (ENSOCUG00000025264) #17	FBXO16 (ENSOCUG00000022817) #18	ZNF395 (ENSOCUG00000014174) #19	PNOC (ENSOCUG00000014172) #20	ELP3 (ENSOCUG00000000034) #21	NUGGC (ENSOCUG00000000032) #22	SCARA5 (ENSOCUG00000026532) #23	PBK (ENSOCUG00000000031)	ESCO2 (ENSOCUG00000009932) #24	CCDC25 (ENSOCUG00000009924) #25	SCARA3 (ENSOCUG00000009918) #26	CLU (ENSOCUG00000005985) #27	ENSOCUG00000024474 #28	ADAM2 (ENSOCUG00000006251) #29	CHRNA2 (ENSOCUG00000007679) #31	PTK2B (ENSOCUG00000007668) #32	TRIM35 (ENSOCUG00000007658) #33	STMN4 (ENSOCUG00000007652) #34	ENSOCUG00000038802	ADRA1A (ENSOCUG00000000775)	ENSOCUG00000033215
Primates	ANCESTRAL SPECIES	25	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00940000164622	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b
Haplorrhini	ANCESTRAL SPECIES	27	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000164622	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00950000182859.A.a.a.b
Simiiformes	ANCESTRAL SPECIES	25	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000164622	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00910000147307	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.a #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b
Catarrhini	ANCESTRAL SPECIES	15	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000153487.b.b.i.b	ENSGT00940000159066	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00910000147307	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.a.b #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00960000186788
Hominoidea	ANCESTRAL SPECIES	14	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000153487.b.b.i.b	ENSGT00940000159066	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00910000147307	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.b.a #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00960000186788
Hominidae	ANCESTRAL SPECIES	15	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000153487.b.b.i.b	ENSGT00940000159066	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00910000147307	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.b.a #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00960000186788
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	13	ENSGT00390000013419	ENSGT00940000153487.b.b.i.b	ENSGT00940000159066	ENSGT00940000155500 #13	ENSGT00910000147585	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00910000147307	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.b.a #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00960000186788
Homo/Pan group	ANCESTRAL SPECIES	12	ENSGT00390000013419	ENSGT00940000153487.b.b.i.b	ENSGT00940000159066	ENSGT00940000155500 #13	ENSGT00910000147585	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00910000147307	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.b.a #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00960000186788
Pan	ANCESTRAL SPECIES	30	ENSGT00390000013419	ENSGT00940000153487.b.b.i.b	ENSGT00940000159066	ENSGT00940000155500 #13	ENSGT00910000147585	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00910000147307	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.b.a #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00960000186788
Bonobo	MODERN SPECIES	21	SARAF (ENSPPAG00000032572)	ENSPPAG00000043687	DUSP4 (ENSPPAG00000036541)	KIF13B (ENSPPAG00000042259) #13	ENSPPAG00000036843	HMBOX1 (ENSPPAG00000026235) #14	INTS9 (ENSPPAG00000041473) #15	ENSPPAG00000027198	EXTL3 (ENSPPAG00000033582) #16	FZD3 (ENSPPAG00000032462) #17	FBXO16 (ENSPPAG00000030694) #18	ZNF395 (ENSPPAG00000029300) #19	PNOC (ENSPPAG00000031795) #20	ENSPPAG00000042684	ELP3 (ENSPPAG00000003473) #21	NUGGC (ENSPPAG00000033912) #22	SCARA5 (ENSPPAG00000032372) #23	PBK (ENSPPAG00000036956)	ESCO2 (ENSPPAG00000037825) #24	CCDC25 (ENSPPAG00000035057) #25	SCARA3 (ENSPPAG00000031092) #26	CLU (ENSPPAG00000030389) #27	EPHX2 (ENSPPAG00000034443) #30	CHRNA2 (ENSPPAG00000042024) #31	PTK2B (ENSPPAG00000037974) #32	TRIM35 (ENSPPAG00000038841) #33	ENSPPAG00000043385 #34	ADRA1A (ENSPPAG00000043804)	DPYSL2 (ENSPPAG00000035831)	PNMA2 (ENSPPAG00000033170)	ENSPPAG00000040176
Chimpanzee	MODERN SPECIES	21	LEPROTL1 (ENSPTRG00000039951)	SARAF (ENSPTRG00000020131)	ENSPTRG00000043672	DUSP4 (ENSPTRG00000020129)	ENSPTRG00000051054	KIF13B (ENSPTRG00000023437) #13	HMBOX1 (ENSPTRG00000020127) #14	INTS9 (ENSPTRG00000020125) #15	EXTL3 (ENSPTRG00000020124) #16	FZD3 (ENSPTRG00000020122) #17	FBXO16 (ENSPTRG00000034416) #18	ZNF395 (ENSPTRG00000020119) #19	PNOC (ENSPTRG00000020116) #20	ENSPTRG00000043531	ELP3 (ENSPTRG00000020115) #21	NUGGC (ENSPTRG00000020114) #22	SCARA5 (ENSPTRG00000020113) #23	PBK (ENSPTRG00000020112)	ESCO2 (ENSPTRG00000020110) #24	CCDC25 (ENSPTRG00000020109) #25	SCARA3 (ENSPTRG00000020108) #26	CLU (ENSPTRG00000020107) #27	EPHX2 (ENSPTRG00000020106) #30	CHRNA2 (ENSPTRG00000020105) #31	PTK2B (ENSPTRG00000020104) #32	TRIM35 (ENSPTRG00000020103) #33	STMN4 (ENSPTRG00000020102) #34	ENSPTRG00000045362	ADRA1A (ENSPTRG00000020100)	DPYSL2 (ENSPTRG00000020099)	PNMA2 (ENSPTRG00000051035)
Human	MODERN SPECIES	20	RBPMS (ENSG00000157110)	DCTN6 (ENSG00000104671)	MBOAT4 (ENSG00000177669)	LEPROTL1 (ENSG00000104660)	SARAF (ENSG00000133872)	DUSP4 (ENSG00000120875)	KIF13B (ENSG00000197892) #13	HMBOX1 (ENSG00000147421) #14	INTS9 (ENSG00000104299) #15	EXTL3 (ENSG00000012232) #16	FZD3 (ENSG00000104290) #17	FBXO16 (ENSG00000214050) #18	ZNF395 (ENSG00000186918) #19	PNOC (ENSG00000168081) #20	ELP3 (ENSG00000134014) #21	NUGGC (ENSG00000189233) #22	SCARA5 (ENSG00000168079) #23	PBK (ENSG00000168078)	ESCO2 (ENSG00000171320) #24	CCDC25 (ENSG00000147419) #25	SCARA3 (ENSG00000168077) #26	CLU (ENSG00000120885) #27	EPHX2 (ENSG00000120915) #30	CHRNA2 (ENSG00000120903) #31	PTK2B (ENSG00000120899) #32	TRIM35 (ENSG00000104228) #33	STMN4 (ENSG00000015592) #34	ADRA1A (ENSG00000120907)	DPYSL2 (ENSG00000092964)	PNMA2 (ENSG00000240694)	BNIP3L (ENSG00000104765)
Gorilla	MODERN SPECIES	21	ENSGGOG00000039626	ENSGGOG00000036670	ENSGGOG00000038643	ENSGGOG00000022968	DUSP4 (ENSGGOG00000005916)	ENSGGOG00000037881	KIF13B (ENSGGOG00000000863) #13	HMBOX1 (ENSGGOG00000000860) #14	INTS9 (ENSGGOG00000017009) #15	EXTL3 (ENSGGOG00000008655) #16	FZD3 (ENSGGOG00000024822) #17	FBXO16 (ENSGGOG00000016343) #18	ZNF395 (ENSGGOG00000015725) #19	PNOC (ENSGGOG00000015723) #20	ELP3 (ENSGGOG00000004808) #21	NUGGC (ENSGGOG00000011097) #22	SCARA5 (ENSGGOG00000001855) #23	PBK (ENSGGOG00000006648)	ESCO2 (ENSGGOG00000009689) #24	CCDC25 (ENSGGOG00000009685) #25	ENSGGOG00000004099 #26	CLU (ENSGGOG00000016926) #27	EPHX2 (ENSGGOG00000016993) #30	CHRNA2 (ENSGGOG00000015596) #31	PTK2B (ENSGGOG00000015589) #32	ENSGGOG00000010652 #33	ENSGGOG00000003341 #34	ADRA1A (ENSGGOG00000000511)	DPYSL2 (ENSGGOG00000000194)	PNMA2 (ENSGGOG00000043329)	ENSGGOG00000038243
Orangutan	MODERN SPECIES	21	MBOAT4 (ENSPPYG00000018485)	ENSPPYG00000032388	LEPROTL1 (ENSPPYG00000018484)	SARAF (ENSPPYG00000018483)	ENSPPYG00000038802	DUSP4 (ENSPPYG00000018482)	KIF13B (ENSPPYG00000018481) #13	HMBOX1 (ENSPPYG00000018480) #14	INTS9 (ENSPPYG00000018479) #15	EXTL3 (ENSPPYG00000018478) #16	FZD3 (ENSPPYG00000018477) #17	FBXO16 (ENSPPYG00000029855) #18	ZNF395 (ENSPPYG00000018476) #19	PNOC (ENSPPYG00000018475) #20	ELP3 (ENSPPYG00000018473) #21	NUGGC (ENSPPYG00000018472) #22	SCARA5 (ENSPPYG00000018471) #23	PBK (ENSPPYG00000018470)	ESCO2 (ENSPPYG00000018469) #24	CCDC25 (ENSPPYG00000018468)	SCARA3 (ENSPPYG00000018467) #26	CLU (ENSPPYG00000018466) #27	EPHX2 (ENSPPYG00000018465) #30	CHRNA2 (ENSPPYG00000018464) #31	PTK2B (ENSPPYG00000018462) #32	TRIM35 (ENSPPYG00000018461) #33	STMN4 (ENSPPYG00000018460) #34	ADRA1A (ENSPPYG00000018459)	DPYSL2 (ENSPPYG00000018458)	PNMA2 (ENSPPYG00000018457)	ENSPPYG00000033464
Gibbon	MODERN SPECIES	23	MBOAT4 (ENSNLEG00000011902)	ENSNLEG00000019089	ENSNLEG00000011892	SARAF (ENSNLEG00000011880)	DUSP4 (ENSNLEG00000016740)	KIF13B (ENSNLEG00000016716) #13	HMBOX1 (ENSNLEG00000016701) #14	INTS9 (ENSNLEG00000016658) #15	ENSNLEG00000035669	EXTL3 (ENSNLEG00000016652) #16	FZD3 (ENSNLEG00000016642) #17	ENSNLEG00000016633 #18	ZNF395 (ENSNLEG00000016613) #19	ENSNLEG00000016608 #20	ELP3 (ENSNLEG00000016577) #21	NUGGC (ENSNLEG00000016569) #22	SCARA5 (ENSNLEG00000016553) #23	PBK (ENSNLEG00000016542)	ESCO2 (ENSNLEG00000016527) #24	ENSNLEG00000016507 #25	SCARA3 (ENSNLEG00000016505) #26	CLU (ENSNLEG00000016366) #27	EPHX2 (ENSNLEG00000016316) #30	CHRNA2 (ENSNLEG00000016309) #31	PTK2B (ENSNLEG00000016291) #32	TRIM35 (ENSNLEG00000016281) #33	STMN4 (ENSNLEG00000031885) #34	ADRA1A (ENSNLEG00000016272)	DPYSL2 (ENSNLEG00000016244)	PNMA2 (ENSNLEG00000019079)	BNIP3L (ENSNLEG00000016221)
Cercopithecidae	ANCESTRAL SPECIES	14	ENSGT01030000234564.a.a.b.b	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000153487.b.b.i.b	ENSGT00940000159066	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.a.b #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00960000186788
Cercopithecinae	ANCESTRAL SPECIES	16	ENSGT01030000234564.a.a.b.b	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000153487.b.b.i.b	ENSGT00940000159066	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.a.b #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b
Cercopithecinae_a	ANCESTRAL SPECIES	15	ENSGT01030000234564.a.a.b.b	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000153487.b.b.i.b	ENSGT00940000159066	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00950000183210.d.a.c.b.b.a.b.b.c	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.a.b #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b
Cercopithecinae_b	ANCESTRAL SPECIES	9	ENSGT01030000234564.a.a.b.b	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000153487.b.b.i.b	ENSGT00940000159066	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00950000183210.d.a.c.b.b.a.b.b.c	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.a.b #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b
Olive baboon	MODERN SPECIES	18	MBOAT4 (ENSPANG00000020593)	LEPROTL1 (ENSPANG00000018510)	SARAF (ENSPANG00000005235)	ENSPANG00000044385	ENSPANG00000037472	DUSP4 (ENSPANG00000016692)	KIF13B (ENSPANG00000020594) #13	HMBOX1 (ENSPANG00000014537) #14	INTS9 (ENSPANG00000016305) #15	EXTL3 (ENSPANG00000016340) #16	FZD3 (ENSPANG00000010199) #17	FBXO16 (ENSPANG00000019570) #18	ZNF395 (ENSPANG00000017244) #19	PNOC (ENSPANG00000022004) #20	ELP3 (ENSPANG00000019350) #21	NUGGC (ENSPANG00000010200) #22	SCARA5 (ENSPANG00000021266) #23	PBK (ENSPANG00000024523)	ESCO2 (ENSPANG00000008112) #24	ENSPANG00000012552 #25	SCARA3 (ENSPANG00000016907) #26	CLU (ENSPANG00000024524) #27	EPHX2 (ENSPANG00000001096) #30	CHRNA2 (ENSPANG00000015733) #31	PTK2B (ENSPANG00000019189) #32	TRIM35 (ENSPANG00000017759) #33	STMN4 (ENSPANG00000007322) #34	ADRA1A (ENSPANG00000024527)	DPYSL2 (ENSPANG00000024528)	PNMA2 (ENSPANG00000007854)	ENSPANG00000048024
Cercopithecinae_d	ANCESTRAL SPECIES	50	ENSGT01030000234564.a.a.b.b	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000153487.b.b.i.b	ENSGT00940000159066	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00950000183210.d.a.c.b.b.a.b.b.c	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.a.b #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b
Sooty mangabey	MODERN SPECIES	555	MBOAT4 (ENSCATG00000029389)	LEPROTL1 (ENSCATG00000037168)	SARAF (ENSCATG00000044043)	ENSCATG00000041532	DUSP4 (ENSCATG00000031537)	KIF13B (ENSCATG00000008274) #13	HMBOX1 (ENSCATG00000037589) #14	INTS9 (ENSCATG00000042463) #15	EXTL3 (ENSCATG00000029453) #16	FZD3 (ENSCATG00000044589) #17	FBXO16 (ENSCATG00000040856) #18	ZNF395 (ENSCATG00000032647) #19	PNOC (ENSCATG00000034393) #20	ENSCATG00000035437	ELP3 (ENSCATG00000034665) #21	NUGGC (ENSCATG00000011556) #22	SCARA5 (ENSCATG00000032773) #23	PBK (ENSCATG00000023001)	ESCO2 (ENSCATG00000032436) #24	ENSCATG00000033671 #25	SCARA3 (ENSCATG00000037167) #26	CLU (ENSCATG00000009271) #27	EPHX2 (ENSCATG00000029846) #30	CHRNA2 (ENSCATG00000031746) #31	PTK2B (ENSCATG00000032885) #32	TRIM35 (ENSCATG00000032262) #33	STMN4 (ENSCATG00000022939) #34	ADRA1A (ENSCATG00000045125)	DPYSL2 (ENSCATG00000034654)	PNMA2 (ENSCATG00000017448)	BNIP3L (ENSCATG00000036601)
Drill	MODERN SPECIES	879							ENSMLEG00000043883 #14	INTS9 (ENSMLEG00000027845) #15	EXTL3 (ENSMLEG00000040065) #16	FZD3 (ENSMLEG00000040352) #17	FBXO16 (ENSMLEG00000007596) #18	ZNF395 (ENSMLEG00000005455) #19	PNOC (ENSMLEG00000031812) #20	ENSMLEG00000015003	ELP3 (ENSMLEG00000040984) #21	NUGGC (ENSMLEG00000042548) #22	SCARA5 (ENSMLEG00000041455) #23	PBK (ENSMLEG00000031460)	ESCO2 (ENSMLEG00000033287) #24	ENSMLEG00000029491 #25	SCARA3 (ENSMLEG00000035030) #26	CLU (ENSMLEG00000035141) #27	EPHX2 (ENSMLEG00000029411) #30	CHRNA2 (ENSMLEG00000029000) #31	PTK2B (ENSMLEG00000030832) #32	TRIM35 (ENSMLEG00000030731) #33	STMN4 (ENSMLEG00000037742) #34	ADRA1A (ENSMLEG00000043053)	DPYSL2 (ENSMLEG00000042022)	PNMA2 (ENSMLEG00000010554)	BNIP3L (ENSMLEG00000041439)
Macaca	ANCESTRAL SPECIES	14	ENSGT01030000234564.a.a.b.b	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000153487.b.b.i.b	ENSGT00940000159066	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00950000183210.d.a.c.b.b.a.b.b.c	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.a.b #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b
Pig-tailed macaque	MODERN SPECIES	579	MBOAT4 (ENSMNEG00000029602)	LEPROTL1 (ENSMNEG00000045245)	SARAF (ENSMNEG00000010730)	ENSMNEG00000037297	DUSP4 (ENSMNEG00000039817)	KIF13B (ENSMNEG00000002442) #13	HMBOX1 (ENSMNEG00000036228) #14	INTS9 (ENSMNEG00000035204) #15	EXTL3 (ENSMNEG00000038935) #16	FZD3 (ENSMNEG00000040320) #17	FBXO16 (ENSMNEG00000045209) #18	ZNF395 (ENSMNEG00000011767) #19	PNOC (ENSMNEG00000032474) #20	ENSMNEG00000021099	ELP3 (ENSMNEG00000024316) #21	NUGGC (ENSMNEG00000045452) #22	SCARA5 (ENSMNEG00000043810) #23	PBK (ENSMNEG00000043731)	ENSMNEG00000007575	ESCO2 (ENSMNEG00000038253) #24	ENSMNEG00000036331 #25	SCARA3 (ENSMNEG00000037952) #26	CLU (ENSMNEG00000043022) #27	EPHX2 (ENSMNEG00000031898) #30	CHRNA2 (ENSMNEG00000036009) #31	PTK2B (ENSMNEG00000032809) #32	TRIM35 (ENSMNEG00000033062) #33	STMN4 (ENSMNEG00000042099) #34	ADRA1A (ENSMNEG00000032467)	DPYSL2 (ENSMNEG00000031797)	ENSMNEG00000040560
Macaca_a	ANCESTRAL SPECIES	16	ENSGT00940000165777	ENSGT00390000017890	ENSGT01030000234564.a.a.b.b	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000159066	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.a.b #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b
Crab-eating macaque	MODERN SPECIES	18	MBOAT4 (ENSMFAG00000039870)	ENSMFAG00000032781	SARAF (ENSMFAG00000046215)	DUSP4 (ENSMFAG00000003869)	KIF13B (ENSMFAG00000038520) #13	HMBOX1 (ENSMFAG00000035548) #14	ENSMFAG00000060486	INTS9 (ENSMFAG00000043511) #15	EXTL3 (ENSMFAG00000045572) #16	FZD3 (ENSMFAG00000044555) #17	FBXO16 (ENSMFAG00000043613) #18	ENSMFAG00000049652	ZNF395 (ENSMFAG00000036920) #19	PNOC (ENSMFAG00000044801) #20	ELP3 (ENSMFAG00000000785) #21	NUGGC (ENSMFAG00000043857) #22	SCARA5 (ENSMFAG00000019218) #23	PBK (ENSMFAG00000001680)	ESCO2 (ENSMFAG00000044655) #24	ENSMFAG00000035835 #25	SCARA3 (ENSMFAG00000026741) #26	CLU (ENSMFAG00000041649) #27	EPHX2 (ENSMFAG00000036427) #30	CHRNA2 (ENSMFAG00000003637) #31	PTK2B (ENSMFAG00000003719) #32	TRIM35 (ENSMFAG00000035683) #33	ENSMFAG00000054931	STMN4 (ENSMFAG00000032113) #34	ADRA1A (ENSMFAG00000030813)	DPYSL2 (ENSMFAG00000005287)	PNMA2 (ENSMFAG00000000029)
Rhesus	MODERN SPECIES	18	DCTN6 (ENSMMUG00000013735)	MBOAT4 (ENSMMUG00000052895)	LEPROTL1 (ENSMMUG00000014144)	SARAF (ENSMMUG00000014143)	DUSP4 (ENSMMUG00000049727)	KIF13B (ENSMMUG00000039515) #13	HMBOX1 (ENSMMUG00000014981) #14	INTS9 (ENSMMUG00000019723) #15	EXTL3 (ENSMMUG00000017700) #16	FZD3 (ENSMMUG00000007486) #17	FBXO16 (ENSMMUG00000007480) #18	ZNF395 (ENSMMUG00000060762) #19	PNOC (ENSMMUG00000007479) #20	ENSMMUG00000064490	ELP3 (ENSMMUG00000005067) #21	NUGGC (ENSMMUG00000001040) #22	SCARA5 (ENSMMUG00000022044) #23	PBK (ENSMMUG00000016019)	ESCO2 (ENSMMUG00000016018) #24	CCDC25 (ENSMMUG00000016016) #25	ENSMMUG00000056404	SCARA3 (ENSMMUG00000021517) #26	CLU (ENSMMUG00000021516) #27	EPHX2 (ENSMMUG00000021515) #30	CHRNA2 (ENSMMUG00000021514) #31	PTK2B (ENSMMUG00000019159) #32	TRIM35 (ENSMMUG00000010092) #33	STMN4 (ENSMMUG00000018670) #34	ADRA1A (ENSMMUG00000023112)	ENSMMUG00000055650	DPYSL2 (ENSMMUG00000012718)
Rhinopithecus	ANCESTRAL SPECIES	55	ENSGT00390000017890	ENSGT01030000234564.a.a.b.b	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000153487.b.b.i.b	ENSGT00940000159066	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.a	ENSGT00940000158598 #24	ENSGT00390000004380.m.a.b #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00960000186788
Golden snub-nosed monkey	MODERN SPECIES	1551	MBOAT4 (ENSRROG00000034165)	LEPROTL1 (ENSRROG00000029326)	SARAF (ENSRROG00000027882)	ENSRROG00000037428	ENSRROG00000023257	DUSP4 (ENSRROG00000022122)	KIF13B (ENSRROG00000043696) #13	HMBOX1 (ENSRROG00000031895) #14	INTS9 (ENSRROG00000040531) #15	EXTL3 (ENSRROG00000037901) #16	FZD3 (ENSRROG00000042665) #17	FBXO16 (ENSRROG00000031695) #18	ZNF395 (ENSRROG00000039052) #19	PNOC (ENSRROG00000034843) #20	ELP3 (ENSRROG00000035502) #21	NUGGC (ENSRROG00000035584) #22	SCARA5 (ENSRROG00000038278) #23
Black snub-nosed monkey	MODERN SPECIES	98				YIPF5 (ENSRBIG00000014169)	KCTD16 (ENSRBIG00000034847)	ENSRBIG00000044873	KIF13B (ENSRBIG00000043742) #13	HMBOX1 (ENSRBIG00000034543) #14	INTS9 (ENSRBIG00000038084) #15	EXTL3 (ENSRBIG00000028228) #16	FZD3 (ENSRBIG00000040353) #17	FBXO16 (ENSRBIG00000037905) #18	ZNF395 (ENSRBIG00000012476) #19	PNOC (ENSRBIG00000034240) #20	ELP3 (ENSRBIG00000029829) #21	NUGGC (ENSRBIG00000043902) #22	SCARA5 (ENSRBIG00000035322) #23	ENSRBIG00000030020	ENSRBIG00000039243	ESCO2 (ENSRBIG00000012033) #24	ENSRBIG00000043704 #25	SCARA3 (ENSRBIG00000043052) #26	CLU (ENSRBIG00000030449) #27	EPHX2 (ENSRBIG00000044411) #30	CHRNA2 (ENSRBIG00000030777) #31	PTK2B (ENSRBIG00000030703) #32	TRIM35 (ENSRBIG00000038938) #33	STMN4 (ENSRBIG00000039520) #34	ADRA1A (ENSRBIG00000043723)	DPYSL2 (ENSRBIG00000038509)	PNMA2 (ENSRBIG00000016543)
Platyrrhini	ANCESTRAL SPECIES	29	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00910000147307	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.a #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a
Cebidae	ANCESTRAL SPECIES	30	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00910000147307	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.a #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a
Cebidae_a	ANCESTRAL SPECIES	44	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00910000147307	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380.m.a #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a
Capuchin	MODERN SPECIES	125	RP1L1 (ENSCCAG00000024515)	PRSS55 (ENSCCAG00000031198) #9	PRSS51 (ENSCCAG00000034610) ##9	MSRA (ENSCCAG00000027909) #12	ENSCCAG00000021568	KIF13B (ENSCCAG00000032396) #13	HMBOX1 (ENSCCAG00000025637) #14	INTS9 (ENSCCAG00000005937) #15	ENSCCAG00000030684	EXTL3 (ENSCCAG00000029340) #16	FZD3 (ENSCCAG00000030357) #17	ENSCCAG00000035625	ZNF395 (ENSCCAG00000010590) #19	PNOC (ENSCCAG00000033157) #20	ELP3 (ENSCCAG00000026958) #21	NUGGC (ENSCCAG00000024929) #22	SCARA5 (ENSCCAG00000020556) #23	PBK (ENSCCAG00000026612)	ESCO2 (ENSCCAG00000020110) #24	CCDC25 (ENSCCAG00000037254) #25	SCARA3 (ENSCCAG00000036648) #26	CLU (ENSCCAG00000019707) #27	EPHX2 (ENSCCAG00000028330) #30	CHRNA2 (ENSCCAG00000025139) #31	PTK2B (ENSCCAG00000027006) #32	TRIM35 (ENSCCAG00000036836) #33	STMN4 (ENSCCAG00000024945) #34	ENSCCAG00000021336	ADRA1A (ENSCCAG00000017294)	DPYSL2 (ENSCCAG00000034157)	BNIP3L (ENSCCAG00000037644)
Bolivian squirrel monkey	MODERN SPECIES	132					MSRA (ENSSBOG00000026473) #12	KIF13B (ENSSBOG00000011883) #13	HMBOX1 (ENSSBOG00000022462) #14	INTS9 (ENSSBOG00000034897) #15	EXTL3 (ENSSBOG00000029919) #16	FZD3 (ENSSBOG00000030894) #17	ENSSBOG00000012318	FBXO16 (ENSSBOG00000031835) #18	ZNF395 (ENSSBOG00000030199) #19	PNOC (ENSSBOG00000021496) #20	ELP3 (ENSSBOG00000025739) #21	NUGGC (ENSSBOG00000028930) #22	SCARA5 (ENSSBOG00000028648) #23	ESCO2 (ENSSBOG00000023036) #24	ENSSBOG00000032304 #25	SCARA3 (ENSSBOG00000021459) #26	CLU (ENSSBOG00000030641) #27	EPHX2 (ENSSBOG00000034083) #30	CHRNA2 (ENSSBOG00000032890) #31	PTK2B (ENSSBOG00000020869) #32	TRIM35 (ENSSBOG00000023023) #33	STMN4 (ENSSBOG00000027671) #34	ADRA1A (ENSSBOG00000019482)	DPYSL2 (ENSSBOG00000022904)	BNIP3L (ENSSBOG00000001484)	PPP2R2A (ENSSBOG00000022095)	EBF2 (ENSSBOG00000029332)
Marmoset	MODERN SPECIES	4	ENSCJAG00000084199	ENSCJAG00000073616	KIF13B (ENSCJAG00000015694) #13	ENSCJAG00000014551	HMBOX1 (ENSCJAG00000015654) #14	INTS9 (ENSCJAG00000015614) #15	ENSCJAG00000083098	EXTL3 (ENSCJAG00000015598) #16	ENSCJAG00000079344	ENSCJAG00000085398	FZD3 (ENSCJAG00000015561) #17	FBXO16 (ENSCJAG00000015578) #18	ZNF395 (ENSCJAG00000015540) #19	PNOC (ENSCJAG00000015535) #20	ELP3 (ENSCJAG00000015478) #21	NUGGC (ENSCJAG00000015456) #22	SCARA5 (ENSCJAG00000015467) #23	PBK (ENSCJAG00000015448)	ESCO2 (ENSCJAG00000015416) #24	ENSCJAG00000052322 #25	SCARA3 (ENSCJAG00000019539) #26	CLU (ENSCJAG00000019662) #27	EPHX2 (ENSCJAG00000019677) #30	CHRNA2 (ENSCJAG00000019690) #31	PTK2B (ENSCJAG00000019574) #32	TRIM35 (ENSCJAG00000019863) #33	STMN4 (ENSCJAG00000019866) #34	ADRA1A (ENSCJAG00000080222)	ENSCJAG00000084865	DPYSL2 (ENSCJAG00000042451)	BNIP3L (ENSCJAG00000075722)
Mas night monkey	MODERN SPECIES	974		MSRA (ENSANAG00000017040) #12	KIF13B (ENSANAG00000030480) #13	HMBOX1 (ENSANAG00000023362) #14	INTS9 (ENSANAG00000031763) #15	ENSANAG00000031622	EXTL3 (ENSANAG00000034591) #16	ENSANAG00000018007	FZD3 (ENSANAG00000034098) #17	ENSANAG00000035511	FBXO16 (ENSANAG00000010190) #18	ZNF395 (ENSANAG00000035574) #19	PNOC (ENSANAG00000005124) #20	ELP3 (ENSANAG00000037178) #21	ENSANAG00000026004	NUGGC (ENSANAG00000022394) #22	SCARA5 (ENSANAG00000022183) #23	PBK (ENSANAG00000031844)	ESCO2 (ENSANAG00000021740) #24	ENSANAG00000027853 #25	SCARA3 (ENSANAG00000032323) #26	CLU (ENSANAG00000032018) #27	EPHX2 (ENSANAG00000006028) #30	CHRNA2 (ENSANAG00000023714) #31	PTK2B (ENSANAG00000034147) #32	TRIM35 (ENSANAG00000034109) #33	STMN4 (ENSANAG00000021238) #34	ENSANAG00000032951	ADRA1A (ENSANAG00000022712)	ENSANAG00000034640	DPYSL2 (ENSANAG00000034307)
Tarsier	MODERN SPECIES	5918													ZNF395 (ENSTSYG00000031984) #19	PNOC (ENSTSYG00000000621) #20	ELP3 (ENSTSYG00000007851) #21	NUGGC (ENSTSYG00000011832) #22	SCARA5 (ENSTSYG00000031613) #23	PBK (ENSTSYG00000003556)	ESCO2 (ENSTSYG00000009947) #24	ENSTSYG00000000732 #25	ENSTSYG00000037574	SCARA3 (ENSTSYG00000008415) #26	CLU (ENSTSYG00000001328) #27
Strepsirrhini	ANCESTRAL SPECIES	25	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b
Lemuriformes	ANCESTRAL SPECIES	32	ENSGT00940000171197	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b
Mouse lemur	MODERN SPECIES	12	PINX1 (ENSMICG00000044679) #7	SOX7 (ENSMICG00000009404)	ENSMICG00000015858	PRSS55 (ENSMICG00000009385) #9	ENSMICG00000044327	MSRA (ENSMICG00000043288) #12	KIF13B (ENSMICG00000010427) #13	HMBOX1 (ENSMICG00000010422) #14	INTS9 (ENSMICG00000010411) #15	EXTL3 (ENSMICG00000027437) #16	FZD3 (ENSMICG00000002985) #17	FBXO16 (ENSMICG00000036274) #18	ZNF395 (ENSMICG00000011993) #19	PNOC (ENSMICG00000043478) #20	ELP3 (ENSMICG00000011977) #21	NUGGC (ENSMICG00000030884) #22	SCARA5 (ENSMICG00000038705) #23	PBK (ENSMICG00000001285)	ESCO2 (ENSMICG00000029625) #24	CCDC25 (ENSMICG00000042632) #25	SCARA3 (ENSMICG00000035553) #26	CLU (ENSMICG00000007720) #27	ENSMICG00000028711 #28	ENSMICG00000007709 #30	CHRNA2 (ENSMICG00000007702) #31	PTK2B (ENSMICG00000007677) #32	TRIM35 (ENSMICG00000038500) #33	STMN4 (ENSMICG00000012281) #34	ENSMICG00000026774	ADRA1A (ENSMICG00000015812)	DPYSL2 (ENSMICG00000015794)
Lemuriformes_a	ANCESTRAL SPECIES	34	ENSGT00940000171197	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b
Coquerels sifaka	MODERN SPECIES	604		ENSPCOG00000028161 #7	ENSPCOG00000019612	PRSS55 (ENSPCOG00000024420) #9	ENSPCOG00000017078	MSRA (ENSPCOG00000025498) #12	KIF13B (ENSPCOG00000024630) #13	HMBOX1 (ENSPCOG00000018119) #14	INTS9 (ENSPCOG00000026338) #15	EXTL3 (ENSPCOG00000008934) #16	FZD3 (ENSPCOG00000016331) #17	FBXO16 (ENSPCOG00000019089) #18	ZNF395 (ENSPCOG00000020739) #19	PNOC (ENSPCOG00000022608) #20	ELP3 (ENSPCOG00000014687) #21	NUGGC (ENSPCOG00000018815) #22	SCARA5 (ENSPCOG00000020054) #23
Greater bamboo lemur	MODERN SPECIES	236	ENSPSMG00000011750	ENSPSMG00000011741	PRSS55 (ENSPSMG00000011735) #9	PRSS51 (ENSPSMG00000011719) ##9	ENSPSMG00000011711	MSRA (ENSPSMG00000011658) #12	KIF13B (ENSPSMG00000011561) #13	HMBOX1 (ENSPSMG00000011458) #14	INTS9 (ENSPSMG00000011383) #15	EXTL3 (ENSPSMG00000011315) #16	FZD3 (ENSPSMG00000011295) #17	FBXO16 (ENSPSMG00000011278) #18	ZNF395 (ENSPSMG00000011230) #19	PNOC (ENSPSMG00000011213) #20	ELP3 (ENSPSMG00000011191) #21	NUGGC (ENSPSMG00000011148) #22	SCARA5 (ENSPSMG00000011126) #23	PBK (ENSPSMG00000011100)	ESCO2 (ENSPSMG00000011084) #24	CCDC25 (ENSPSMG00000011072) #25	SCARA3 (ENSPSMG00000011055) #26	CLU (ENSPSMG00000011031) #27	ENSPSMG00000011018 #28	EPHX2 (ENSPSMG00000010900) #30	CHRNA2 (ENSPSMG00000010720) #31	PTK2B (ENSPSMG00000010424) #32	TRIM35 (ENSPSMG00000010142) #33	STMN4 (ENSPSMG00000010113) #34	ADRA1A (ENSPSMG00000010078)	DPYSL2 (ENSPSMG00000009959)	PNMA2 (ENSPSMG00000009835)
Bushbaby	MODERN SPECIES	189	C8orf74 (ENSOGAG00000016956) #8	ENSOGAG00000032424	PRSS55 (ENSOGAG00000014201) #9	ENSOGAG00000031709 ##9	ENSOGAG00000030697 #11	MSRA (ENSOGAG00000014203) #12	ENSOGAG00000008477	KIF13B (ENSOGAG00000001382) #13	HMBOX1 (ENSOGAG00000001381) #14	INTS9 (ENSOGAG00000015946) #15	EXTL3 (ENSOGAG00000002322) #16	FZD3 (ENSOGAG00000030202) #17	FBXO16 (ENSOGAG00000030753) #18	ZNF395 (ENSOGAG00000012747) #19	ELP3 (ENSOGAG00000000230) #21	NUGGC (ENSOGAG00000000229) #22	SCARA5 (ENSOGAG00000031847) #23	PBK (ENSOGAG00000009887)	ESCO2 (ENSOGAG00000011834) #24	CCDC25 (ENSOGAG00000011829) #25	SCARA3 (ENSOGAG00000031170) #26	CLU (ENSOGAG00000030580) #27	ENSOGAG00000026271 #28	EPHX2 (ENSOGAG00000003192) #30	CHRNA2 (ENSOGAG00000033591) #31	PTK2B (ENSOGAG00000003185) #32	TRIM35 (ENSOGAG00000027382) #33	STMN4 (ENSOGAG00000010549) #34	ADRA1A (ENSOGAG00000026801)	DPYSL2 (ENSOGAG00000011250)	PNMA2 (ENSOGAG00000011246)
Laurasiatheria	ANCESTRAL SPECIES	24	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00950000185466	ENSGT00940000158598 #24	ENSGT00950000185082	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00950000185466	ENSGT00940000158598 #24	ENSGT00950000185082	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00950000185082	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Suina	ANCESTRAL SPECIES	42	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00950000185082	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Pig	MODERN SPECIES	5	ENSSSCG00000060564 #9	PRSS51 (ENSSSCG00000037519) ##9	ENSSSCG00000009685	ENSSSCG00000046109	MSRA (ENSSSCG00000009684) #12	KIF13B (ENSSSCG00000009683) #13	HMBOX1 (ENSSSCG00000009682) #14	INTS9 (ENSSSCG00000009681) #15	EXTL3 (ENSSSCG00000009680) #16	FZD3 (ENSSSCG00000009679) #17	FBXO16 (ENSSSCG00000052939) #18	ENSSSCG00000058717	ZNF395 (ENSSSCG00000009676) #19	PNOC (ENSSSCG00000032600) #20	ELP3 (ENSSSCG00000009674) #21	NUGGC (ENSSSCG00000009673) #22	ENSSSCG00000009672 #23	PBK (ENSSSCG00000009671)	ENSSSCG00000009670 #24	ENSSSCG00000050594	CCDC25 (ENSSSCG00000024972) #25	SCARA3 (ENSSSCG00000020846) #26	CLU (ENSSSCG00000009668) #27	ENSSSCG00000009667 #28	EPHX2 (ENSSSCG00000009666) #30	CHRNA2 (ENSSSCG00000009665) #31	PTK2B (ENSSSCG00000009664) #32	TRIM35 (ENSSSCG00000033325) #33	STMN4 (ENSSSCG00000009662) #34	ADRA1A (ENSSSCG00000009661)	DPYSL2 (ENSSSCG00000030130)
Chacoan peccary	MODERN SPECIES	813	C8orf74 (ENSCWAG00000018590) #8	ENSCWAG00000018625	PRSS55 (ENSCWAG00000018635) #9	PRSS51 (ENSCWAG00000018695) ##9	ENSCWAG00000018731	MSRA (ENSCWAG00000018777) #12	ENSCWAG00000018799 #13	HMBOX1 (ENSCWAG00000018877) #14	INTS9 (ENSCWAG00000018933) #15	EXTL3 (ENSCWAG00000019022) #16	FZD3 (ENSCWAG00000019052) #17	FBXO16 (ENSCWAG00000019090) #18	ZNF395 (ENSCWAG00000019168) #19	PNOC (ENSCWAG00000008025) #20	ELP3 (ENSCWAG00000008132) #21	NUGGC (ENSCWAG00000008378) #22	SCARA5 (ENSCWAG00000008565) #23	PBK (ENSCWAG00000009029)	ESCO2 (ENSCWAG00000009108) #24	CCDC25 (ENSCWAG00000009241) #25	SCARA3 (ENSCWAG00000009341) #26	CLU (ENSCWAG00000009499) #27	ENSCWAG00000009543 #28	EPHX2 (ENSCWAG00000009691) #30	CHRNA2 (ENSCWAG00000010830) #31	PTK2B (ENSCWAG00000011805) #32	TRIM35 (ENSCWAG00000011889) #33	STMN4 (ENSCWAG00000011950) #34	ADRA1A (ENSCWAG00000012091)	DPYSL2 (ENSCWAG00000012142)	PNMA2 (ENSCWAG00000012323)
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b
Cetacea	ANCESTRAL SPECIES	9	ENSGT00940000161092	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00390000006350.m.a.c.b.a.b	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00940000161092	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00390000006350.m.a.c.b.a.b	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00940000161092	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00390000006350.m.a.c.b.a.b	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00940000161092	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00390000006350.m.a.c.b.a.b	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Monodontidae	ANCESTRAL SPECIES	5	ENSGT01100000263537.b.b.c.a.b	ENSGT00940000156147	ENSGT00390000014113	ENSGT00940000155613	ENSGT00440000038430	ENSGT00940000156613	ENSGT00940000156816.i	ENSGT00910000146847	ENSGT00940000155937	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00390000006350.m.a.c.b.a.b	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Narwhal	MODERN SPECIES	312	SOX7 (ENSMMNG00015015963)	C8orf74 (ENSMMNG00015015998) #8	ENSMMNG00015016048	ENSMMNG00015016085 #9	MSRA (ENSMMNG00015016143) #12	KIF13B (ENSMMNG00015016238) #13	HMBOX1 (ENSMMNG00015016519) #14	INTS9 (ENSMMNG00015016594) #15	ENSMMNG00015016647	EXTL3 (ENSMMNG00015016669) #16	FZD3 (ENSMMNG00015016699) #17	FBXO16 (ENSMMNG00015016791) #18	ZNF395 (ENSMMNG00015016926) #19	PNOC (ENSMMNG00015016968) #20	ELP3 (ENSMMNG00015017014) #21	NUGGC (ENSMMNG00015017103) #22	SCARA5 (ENSMMNG00015017197) #23	PBK (ENSMMNG00015017312)	ESCO2 (ENSMMNG00015017357) #24	CCDC25 (ENSMMNG00015017427) #25	SCARA3 (ENSMMNG00015017508) #26	CLU (ENSMMNG00015017554) #27	ENSMMNG00015017581 #28	EPHX2 (ENSMMNG00015017668) #30	ENSMMNG00015017835	CHRNA2 (ENSMMNG00015017861) #31	PTK2B (ENSMMNG00015017976) #32	TRIM35 (ENSMMNG00015018089) #33	STMN4 (ENSMMNG00015018331) #34	ADRA1A (ENSMMNG00015018492)	DPYSL2 (ENSMMNG00015018544)
Beluga whale	MODERN SPECIES	4	C8orf74 (ENSDLEG00000000430) #8	ENSDLEG00000000449	PRSS55 (ENSDLEG00000000456) #9	MSRA (ENSDLEG00000000471) #12	ENSDLEG00000000488	KIF13B (ENSDLEG00000000516) #13	HMBOX1 (ENSDLEG00000000560) #14	INTS9 (ENSDLEG00000000607) #15	ENSDLEG00000000634	EXTL3 (ENSDLEG00000000646) #16	FZD3 (ENSDLEG00000000662) #17	FBXO16 (ENSDLEG00000000679) #18	ZNF395 (ENSDLEG00000000713) #19	PNOC (ENSDLEG00000000739) #20	ELP3 (ENSDLEG00000000751) #21	NUGGC (ENSDLEG00000000778) #22	SCARA5 (ENSDLEG00000000809) #23	PBK (ENSDLEG00000000821)	ESCO2 (ENSDLEG00000000836) #24	CCDC25 (ENSDLEG00000000874) #25	SCARA3 (ENSDLEG00000000924) #26	CLU (ENSDLEG00000000957) #27	ENSDLEG00000000969 #28	EPHX2 (ENSDLEG00000001005) #30	ENSDLEG00000001060	CHRNA2 (ENSDLEG00000001068) #31	PTK2B (ENSDLEG00000001086) #32	TRIM35 (ENSDLEG00000001119) #33	STMN4 (ENSDLEG00000001142) #34	ADRA1A (ENSDLEG00000001167)	DPYSL2 (ENSDLEG00000001186)
Vaquita	MODERN SPECIES	17	SOX7 (ENSPSNG00000014840)	C8orf74 (ENSPSNG00000014667) #8	ENSPSNG00000014541	ENSPSNG00000014513 #9	ENSPSNG00000014413	MSRA (ENSPSNG00000014246) #12	ENSPSNG00000014157 #13	HMBOX1 (ENSPSNG00000013934) #14	INTS9 (ENSPSNG00000013626) #15	EXTL3 (ENSPSNG00000013526) #16	FZD3 (ENSPSNG00000013472) #17	FBXO16 (ENSPSNG00000013266) #18	ZNF395 (ENSPSNG00000013118) #19	PNOC (ENSPSNG00000013048) #20	ELP3 (ENSPSNG00000012827) #21	NUGGC (ENSPSNG00000012623) #22	SCARA5 (ENSPSNG00000012329) #23	PBK (ENSPSNG00000012263)	ESCO2 (ENSPSNG00000012224) #24	CCDC25 (ENSPSNG00000012132) #25	SCARA3 (ENSPSNG00000011999) #26	CLU (ENSPSNG00000011914) #27	ENSPSNG00000011878 #28	CHRNA2 (ENSPSNG00000011813) #31	PTK2B (ENSPSNG00000011703) #32	TRIM35 (ENSPSNG00000011632) #33	STMN4 (ENSPSNG00000011305) #34	ADRA1A (ENSPSNG00000011198)	DPYSL2 (ENSPSNG00000010930)	PNMA2 (ENSPSNG00000010857)	BNIP3L (ENSPSNG00000010778)
Dolphin	MODERN SPECIES	3983																NUGGC (ENSTTRG00000015905) #22
Blue whale	MODERN SPECIES	17	ENSBMSG00010012102	ENSBMSG00010012113	PRSS55 (ENSBMSG00010012126) #9	MSRA (ENSBMSG00010012164) #12	ENSBMSG00010012227	ENSBMSG00010012240 #13	HMBOX1 (ENSBMSG00010000142) #14	INTS9 (ENSBMSG00010000191) #15	ENSBMSG00010000231	EXTL3 (ENSBMSG00010000259) #16	FZD3 (ENSBMSG00010000286) #17	FBXO16 (ENSBMSG00010000332) #18	ZNF395 (ENSBMSG00010000397) #19	PNOC (ENSBMSG00010000426) #20	ELP3 (ENSBMSG00010000472) #21	NUGGC (ENSBMSG00010000532) #22	SCARA5 (ENSBMSG00010000607) #23	PBK (ENSBMSG00010000730)	ESCO2 (ENSBMSG00010000749) #24	CCDC25 (ENSBMSG00010000771) #25	SCARA3 (ENSBMSG00010000815) #26	CLU (ENSBMSG00010000855) #27	ENSBMSG00010000884 #28	EPHX2 (ENSBMSG00010000918) #30	ENSBMSG00010000956	CHRNA2 (ENSBMSG00010000975) #31	PTK2B (ENSBMSG00010001018) #32	TRIM35 (ENSBMSG00010001057) #33	STMN4 (ENSBMSG00010001170) #34	ADRA1A (ENSBMSG00010001276)	DPYSL2 (ENSBMSG00010001313)
Pecora	ANCESTRAL SPECIES	36	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021.c #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b
Percora_a	ANCESTRAL SPECIES	24	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021.d #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.l.a	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b
Bovidae	ANCESTRAL SPECIES	14	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021.d #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.l.a	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B.a #27	ENSGT00390000006684	ENSGT00390000007535	ENSGT01100000264077	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00950000185419	ENSGT00940000156665	ENSGT00390000005644
Bovinae	ANCESTRAL SPECIES	39	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021.d #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000008767.a.b	ENSGT00950000182967.a.a.a.a.a.a.n.d.b.a.b	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.l.a	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B.a #27	ENSGT00390000013989.a.ab	ENSGT00390000005140.b.b.d	ENSGT00390000006684	ENSGT00390000007535	ENSGT01100000264077	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00940000158555.i.b
Bos	ANCESTRAL SPECIES	10	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021.d #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000008767.a.b	ENSGT00950000182967.a.a.a.a.a.a.n.d.b.a.b	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.l.a.a	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B.a #27	ENSGT00390000013989.a.ab.c.a	ENSGT00390000006684	ENSGT00390000007535	ENSGT01100000264077	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00940000158555.i.b	ENSGT00950000185419
Bos_a	ANCESTRAL SPECIES	50	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021.d #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000008767.a.b	ENSGT00950000182967.a.a.a.a.a.a.n.d.b.a.b	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.l.a.a	ENSGT00940000158598.i #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B.a #27	ENSGT00390000013989.a.ab.c.a	ENSGT00390000006684	ENSGT00390000007535	ENSGT01100000264077	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00940000158555.i.b	ENSGT00730000110997.l
Domestic yak	MODERN SPECIES	26	ENSBGRG00000002363	ENSBGRG00000002358	MSRA (ENSBGRG00000002267) #12	ENSBGRG00000002206 #13	HMBOX1 (ENSBGRG00000002158) #14	INTS9 (ENSBGRG00000002069) #15	EXTL3 (ENSBGRG00000002025) #16	ENSBGRG00000002017 #18	ZNF395 (ENSBGRG00000001954) #19	ENSBGRG00000001926	PNOC (ENSBGRG00000001909) #20	ENSBGRG00000001891	ENSBGRG00000001885	ELP3 (ENSBGRG00000001836) #21	ENSBGRG00000001818	NUGGC (ENSBGRG00000001756) #22	SCARA5 (ENSBGRG00000001655) #23	ENSBGRG00000001612	ENSBGRG00000001592 #24	CCDC25 (ENSBGRG00000001516) #25	SCARA3 (ENSBGRG00000001492) #26	ENSBGRG00000001476	ENSBGRG00000001455 #27	ENSBGRG00000001445	ENSBGRG00000001432	TMEM215 (ENSBGRG00000001425)	ENSBGRG00000001402	ENSBGRG00000001384	TOPORS (ENSBGRG00000001367)	ENSBGRG00000001348	RIGI (ENSBGRG00000001303)
Wild yak	MODERN SPECIES	1155								EXTL3 (ENSBMUG00000011033) #16	FZD3 (ENSBMUG00000011021) #17	ENSBMUG00000011006 #18	ZNF395 (ENSBMUG00000010982) #19	PNOC (ENSBMUG00000010949) #20	ENSBMUG00000010943	ENSBMUG00000010935	ELP3 (ENSBMUG00000010845) #21	NUGGC (ENSBMUG00000010743) #22	SCARA5 (ENSBMUG00000010671) #23	PBK (ENSBMUG00000010592)	ESCO2 (ENSBMUG00000010565) #24	CCDC25 (ENSBMUG00000010538) #25
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021.d #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00950000182967.a.a.a.a.a.a.n.d.b.a.b	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.l.a.a	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B.a #27	ENSGT00390000013989.a.ab.c.a	ENSGT00390000006684	ENSGT00390000007535	ENSGT01100000264077	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00950000185419	ENSGT00940000156665
Hybrid Bos Indicus	MODERN SPECIES	27	ENSBIXG00005004942	PRSS55 (ENSBIXG00005028589) #9	PRSS51 (ENSBIXG00005028570) ##9	MSRA (ENSBIXG00005028512) #12	ENSBIXG00005028432	ENSBIXG00005028370 #13	HMBOX1 (ENSBIXG00005004868) #14	INTS9 (ENSBIXG00005028226) #15	EXTL3 (ENSBIXG00005028171) #16	FZD3 (ENSBIXG00005028137) #17	ENSBIXG00005028113 #18	ZNF395 (ENSBIXG00005028019) #19	ENSBIXG00005027879 #20	ENSBIXG00005004791	ELP3 (ENSBIXG00005027835) #21	NUGGC (ENSBIXG00005027718) #22	SCARA5 (ENSBIXG00005004753) #23	ENSBIXG00005027580	ESCO2 (ENSBIXG00005027560) #24	CCDC25 (ENSBIXG00005004734) #25	SCARA3 (ENSBIXG00005027449) #26	ENSBIXG00005027363 #27	TMEM215 (ENSBIXG00005027309)	NDUFB6 (ENSBIXG00005027286)	ENSBIXG00005027238	TOPORS (ENSBIXG00005027224)	RIGI (ENSBIXG00005004673)	ACO1 (ENSBIXG00005027147)	ENSBIXG00005004636	ENSBIXG00005027020	ENSBIXG00005027001
Cow	MODERN SPECIES	27	RP1L1 (ENSBTAG00000020155)	PRSS55 (ENSBTAG00000034665) #9	MSRA (ENSBTAG00000021632) #12	ENSBTAG00000038291 #10	ENSBTAG00000040038	KIF13B (ENSBTAG00000017232) #13	HMBOX1 (ENSBTAG00000010819) #14	INTS9 (ENSBTAG00000008845) #15	EXTL3 (ENSBTAG00000008844) #16	FZD3 (ENSBTAG00000035084) #17	FBXO16 (ENSBTAG00000034626) #18	ZNF395 (ENSBTAG00000000536) #19	PNOC (ENSBTAG00000000534) #20	ENSBTAG00000054551	ELP3 (ENSBTAG00000002730) #21	NUGGC (ENSBTAG00000011321) #22	SCARA5 (ENSBTAG00000019636) #23	PBK (ENSBTAG00000021069)	ESCO2 (ENSBTAG00000006551) #24	CCDC25 (ENSBTAG00000006547) #25	SCARA3 (ENSBTAG00000007657) #26	CLU (ENSBTAG00000005574) #27	ENSBTAG00000034560	TMEM215 (ENSBTAG00000013974)	NDUFB6 (ENSBTAG00000005907)	TOPORS (ENSBTAG00000005905)	RIGI (ENSBTAG00000003366)	ACO1 (ENSBTAG00000000555)	ENSBTAG00000052065	ENSBTAG00000018340	ENSBTAG00000050975
American bison	MODERN SPECIES	3066	PRSS55 (ENSBBBG00000024534) #9	PRSS51 (ENSBBBG00000024522) ##9	ENSBBBG00000024513	MSRA (ENSBBBG00000024509) #12	ENSBBBG00000024420 #13	HMBOX1 (ENSBBBG00000024381) #14	INTS9 (ENSBBBG00000024337) #15	EXTL3 (ENSBBBG00000006297) #16	FZD3 (ENSBBBG00000024196) #17	ENSBBBG00000007807 #18	ZNF395 (ENSBBBG00000006273) #19	PNOC (ENSBBBG00000024099) #20	ENSBBBG00000024093	ENSBBBG00000006262	ELP3 (ENSBBBG00000006255) #21	NUGGC (ENSBBBG00000023948) #22	ZFP64 (ENSBBBG00000023903)	ENSBBBG00000008855	BCAS1 (ENSBBBG00000023792)	CYP24A1 (ENSBBBG00000023751)	ENSBBBG00000023699	DOK5 (ENSBBBG00000023680)	ENSBBBG00000023664
Caprinae	ANCESTRAL SPECIES	43	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021.c.c #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.l.a	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B.a #27	ENSGT00390000006684	ENSGT00390000007535	ENSGT00530000064170.e	ENSGT00940000153173.a	ENSGT00940000157772	ENSGT00940000156665	ENSGT00390000005644	ENSGT01050000244898.a.a.a.b	ENSGT01000000214430.b
Rambouillet Sheep	MODERN SPECIES	11	C8orf74 (ENSOARG00020007527) #8	PRSS55 (ENSOARG00020007475) #9	PRSS51 (ENSOARG00020007420) ##9	ENSOARG00020007386	MSRA (ENSOARG00020007105) #12	ENSOARG00020007036	KIF13B (ENSOARG00020006646) #13	HMBOX1 (ENSOARG00020006289) #14	INTS9 (ENSOARG00020006140) #15	EXTL3 (ENSOARG00020006102) #16	FZD3 (ENSOARG00020006061) #17	FBXO16 (ENSOARG00020005917) #18	ZNF395 (ENSOARG00020005891) #19	PNOC (ENSOARG00020011467) #20	ELP3 (ENSOARG00020010811) #21	NUGGC (ENSOARG00020010690) #22	SCARA5 (ENSOARG00020010482) #23	PBK (ENSOARG00020010392)	ESCO2 (ENSOARG00020010286) #24	ENSOARG00020010095 #25	ENSOARG00020010017	SCARA3 (ENSOARG00020009895) #26	ENSOARG00020009753 #27	TMEM215 (ENSOARG00020009741)	NDUFB6 (ENSOARG00020009670)	ENSOARG00020009633	RIGI (ENSOARG00020009445)	ACO1 (ENSOARG00020009310)	ENSOARG00020009264	ENSOARG00020009228	ENSOARG00020009145
Goat	MODERN SPECIES	27	ENSCHIG00000002212 #9	PRSS51 (ENSCHIG00000012314) ##9	MSRA (ENSCHIG00000014457) #12	KIF13B (ENSCHIG00000011751) #13	HMBOX1 (ENSCHIG00000003424) #14	ENSCHIG00000023976	INTS9 (ENSCHIG00000012847) #15	EXTL3 (ENSCHIG00000027229) #16	FZD3 (ENSCHIG00000023532) #17	ENSCHIG00000013264 #18	ZNF395 (ENSCHIG00000013915) #19	PNOC (ENSCHIG00000027029) #20	ENSCHIG00000011279	ENSCHIG00000011858	ELP3 (ENSCHIG00000025755) #21	NUGGC (ENSCHIG00000016874) #22	SCARA5 (ENSCHIG00000002743) #23	ENSCHIG00000003841	ENSCHIG00000008066	ENSCHIG00000021742	ESCO2 (ENSCHIG00000012950) #24	CCDC25 (ENSCHIG00000005126) #25	SCARA3 (ENSCHIG00000025164) #26	ENSCHIG00000010216 #27	TMEM215 (ENSCHIG00000008408)	NDUFB6 (ENSCHIG00000027260)	TOPORS (ENSCHIG00000012805)	RIGI (ENSCHIG00000025883)	ACO1 (ENSCHIG00000007667)	ENSCHIG00000020484	ENSCHIG00000024316
Siberian musk deer	MODERN SPECIES	82	ENSMMSG00000002664	PRSS55 (ENSMMSG00000002646) #9	PRSS51 (ENSMMSG00000002628) ##9	ENSMMSG00000002600	MSRA (ENSMMSG00000002535) #12	KIF13B (ENSMMSG00000002322) #13	HMBOX1 (ENSMMSG00000002228) #14	INTS9 (ENSMMSG00000002117) #15	EXTL3 (ENSMMSG00000002080) #16	FZD3 (ENSMMSG00000002043) #17	FBXO16 (ENSMMSG00000001979) #18	ZNF395 (ENSMMSG00000001932) #19	PNOC (ENSMMSG00000001909) #20	ENSMMSG00000001898	ELP3 (ENSMMSG00000001831) #21	NUGGC (ENSMMSG00000001781) #22	SCARA5 (ENSMMSG00000001725) #23	PBK (ENSMMSG00000001701)	ESCO2 (ENSMMSG00000001669) #24	CCDC25 (ENSMMSG00000001626) #25
Yarkand deer	MODERN SPECIES	21	PRSS55 (ENSCHYG00000014505) #9	PRSS51 (ENSCHYG00000014535) ##9	MSRA (ENSCHYG00000014594) #12	ENSCHYG00000015022	ENSCHYG00000015172	ENSCHYG00000015382 #13	HMBOX1 (ENSCHYG00000015530) #14	INTS9 (ENSCHYG00000015677) #15	EXTL3 (ENSCHYG00000015963) #16	FZD3 (ENSCHYG00000016136) #17	FBXO16 (ENSCHYG00000016230) #18	ZNF395 (ENSCHYG00000016677) #19	PNOC (ENSCHYG00000016913) #20	ELP3 (ENSCHYG00000016990) #21	ENSCHYG00000017432	NUGGC (ENSCHYG00000017462) #22	SCARA5 (ENSCHYG00000017643) #23	ENSCHYG00000018012	ENSCHYG00000018111	ENSCHYG00000018155 #24	CCDC25 (ENSCHYG00000018352) #25	SCARA3 (ENSCHYG00000018537) #26	ENSCHYG00000018750 #27	ENSCHYG00000019042	TMEM215 (ENSCHYG00000019068)	NDUFB6 (ENSCHYG00000019107)	ENSCHYG00000019247	TOPORS (ENSCHYG00000019297)	ACO1 (ENSCHYG00000019470)	ENSCHYG00000020855	ENSCHYG00000020942
Camelidae	ANCESTRAL SPECIES	47	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b
Arabian camel	MODERN SPECIES	24	C8orf74 (ENSCDRG00005009992) #8	ENSCDRG00005009970	PRSS55 (ENSCDRG00005009845) #9	PRSS51 (ENSCDRG00005009746) ##9	ENSCDRG00005009697	MSRA (ENSCDRG00005009111) #12	KIF13B (ENSCDRG00005020092) #13	HMBOX1 (ENSCDRG00005020044) #14	INTS9 (ENSCDRG00005019980) #15	EXTL3 (ENSCDRG00005019966) #16	FZD3 (ENSCDRG00005019948) #17	FBXO16 (ENSCDRG00005019861) #18	ZNF395 (ENSCDRG00005019830) #19	PNOC (ENSCDRG00005019815) #20	ELP3 (ENSCDRG00005019750) #21	NUGGC (ENSCDRG00005019727) #22	SCARA5 (ENSCDRG00005019702) #23	PBK (ENSCDRG00005019667)	ESCO2 (ENSCDRG00005019654) #24	CCDC25 (ENSCDRG00005019631) #25	SCARA3 (ENSCDRG00005019603) #26	CLU (ENSCDRG00005019585) #27	ENSCDRG00005019569 #28	EPHX2 (ENSCDRG00005019465) #30	CHRNA2 (ENSCDRG00005019402) #31	PTK2B (ENSCDRG00005019294) #32	TRIM35 (ENSCDRG00005019253) #33	STMN4 (ENSCDRG00005019200) #34	ENSCDRG00005019174	ADRA1A (ENSCDRG00005019146)	DPYSL2 (ENSCDRG00005018995)
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00950000185466	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00950000185466	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00950000185466	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823.d #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00390000000378.d.b.db.b	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Ursidae	ANCESTRAL SPECIES	17	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823.d #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B.d #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00390000000378.d.b.db.b
Ursus	ANCESTRAL SPECIES	115	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT01030000234551.k.d.a.c #10	ENSGT00940000154999.B.k	ENSGT00390000003823.d #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B.d #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00390000000378.d.b.db.b
Polar bear	MODERN SPECIES	269	PINX1 (ENSUMAG00000021812) #7	C8orf74 (ENSUMAG00000021814) #8	ENSUMAG00000021815	PRSS55 (ENSUMAG00000021816) #9	ENSUMAG00000021817 #10	ENSUMAG00000021819	MSRA (ENSUMAG00000021822) #12	KIF13B (ENSUMAG00000021894) #13	HMBOX1 (ENSUMAG00000022119) #14	INTS9 (ENSUMAG00000022190) #15	EXTL3 (ENSUMAG00000022456) #16	FZD3 (ENSUMAG00000022459) #17	FBXO16 (ENSUMAG00000022474) #18	ZNF395 (ENSUMAG00000022490) #19	ELP3 (ENSUMAG00000022494) #21	NUGGC (ENSUMAG00000022498) #22	SCARA5 (ENSUMAG00000022508) #23	PBK (ENSUMAG00000022515)	ESCO2 (ENSUMAG00000022519) #24	CCDC25 (ENSUMAG00000000103) #25	SCARA3 (ENSUMAG00000000172) #26	CLU (ENSUMAG00000000329) #27	ENSUMAG00000000345 #28	EPHX2 (ENSUMAG00000000481) #30	CHRNA2 (ENSUMAG00000000675) #31	PTK2B (ENSUMAG00000000711) #32	TRIM35 (ENSUMAG00000000742) #33	STMN4 (ENSUMAG00000000750) #34	ENSUMAG00000000826
American black bear	MODERN SPECIES	2395															ELP3 (ENSUAMG00000013474) #21	NUGGC (ENSUAMG00000013467) #22
Giant Panda	MODERN SPECIES	15	ENSAMEG00000016125	PRSS55 (ENSAMEG00000016120) #9	ENSAMEG00000016119 ##9	ENSAMEG00000016111	ENSAMEG00000027744	ENSAMEG00000016109 #12	ENSAMEG00000016039 #13	HMBOX1 (ENSAMEG00000016028) #14	INTS9 (ENSAMEG00000015995) #15	EXTL3 (ENSAMEG00000015984) #16	FZD3 (ENSAMEG00000015975) #17	FBXO16 (ENSAMEG00000015968) #18	ZNF395 (ENSAMEG00000003309) #19	PNOC (ENSAMEG00000003325) #20	ELP3 (ENSAMEG00000000124) #21	NUGGC (ENSAMEG00000000131) #22	SCARA5 (ENSAMEG00000000133) #23	PBK (ENSAMEG00000000135)	ESCO2 (ENSAMEG00000000137) #24	CCDC25 (ENSAMEG00000000139) #25	SCARA3 (ENSAMEG00000000140) #26	CLU (ENSAMEG00000000141) #27	ENSAMEG00000000147 #28	EPHX2 (ENSAMEG00000000158) #30	CHRNA2 (ENSAMEG00000000168) #31	PTK2B (ENSAMEG00000000174) #32	ENSAMEG00000000207 #33	ENSAMEG00000000209 #34	ENSAMEG00000026433	ENSAMEG00000031090	ENSAMEG00000005638
Mustelinae	ANCESTRAL SPECIES	82						ENSGT00390000003823.c #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00390000000378.d.b.db.b	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Ferret	MODERN SPECIES	369						ENSMPUG00000001073 #13	HMBOX1 (ENSMPUG00000001070) #14	INTS9 (ENSMPUG00000000997) #15	EXTL3 (ENSMPUG00000000995) #16	FZD3 (ENSMPUG00000000981) #17	FBXO16 (ENSMPUG00000000979) #18	ZNF395 (ENSMPUG00000000974) #19	PNOC (ENSMPUG00000000972) #20	ENSMPUG00000000971	ELP3 (ENSMPUG00000000966) #21	NUGGC (ENSMPUG00000000959) #22	SCARA5 (ENSMPUG00000000953) #23	PBK (ENSMPUG00000000915)	ESCO2 (ENSMPUG00000000909) #24	CCDC25 (ENSMPUG00000000908) #25	SCARA3 (ENSMPUG00000000906) #26	CLU (ENSMPUG00000000903) #27	ENSMPUG00000000883 #28	EPHX2 (ENSMPUG00000000882) #30	CHRNA2 (ENSMPUG00000000876) #31	PTK2B (ENSMPUG00000000875) #32	TRIM35 (ENSMPUG00000000873) #33	ENSMPUG00000000872	STMN4 (ENSMPUG00000000871) #34	ENSMPUG00000000868	ADRA1A (ENSMPUG00000000865)
American mink	MODERN SPECIES	253						ENSNVIG00000005841 #12	ENSNVIG00000005852 #13	HMBOX1 (ENSNVIG00000005932) #14	INT9 (ENSNVIG00000006207) #15	EXTL3 (ENSNVIG00000006368) #16	FZD3 (ENSNVIG00000006391) #17	FBXO16 (ENSNVIG00000006404) #18	ZN395 (ENSNVIG00000006450) #19	PNOC (ENSNVIG00000006508) #20	ELP3 (ENSNVIG00000006520) #21	NUGGC (ENSNVIG00000006619) #22	SCARA5 (ENSNVIG00000006662) #23	PBK (ENSNVIG00000006715)	ESCO2 (ENSNVIG00000006733) #24	CCDC25 (ENSNVIG00000006767) #25	SCARA3 (ENSNVIG00000006779) #26	CLU (ENSNVIG00000006796) #27	ENSNVIG00000006816 #28	EPHX2 (ENSNVIG00000006844) #30	CHRNA2 (ENSNVIG00000006884) #31	PTK2B (ENSNVIG00000006919) #32	TRIM35 (ENSNVIG00000007132) #33	STMN4 (ENSNVIG00000007161) #34
Canidae	ANCESTRAL SPECIES	31	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.m	ENSGT00950000185466	ENSGT00940000158598 #24	ENSGT00390000004380.f #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Canis_lupus	ANCESTRAL SPECIES	18	ENSGT00940000154242.a	ENSGT00940000153973.c.b.c.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021.f #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.m	ENSGT00940000158598 #24	ENSGT00390000004380.f #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT00980000202976	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Dog	MODERN SPECIES	17	PRSS55 (ENSCAFG00845020196) #9	PRSS51 (ENSCAFG00845020294) ##9	ENSCAFG00845020342	ENSCAFG00845020456 #12	ENSCAFG00845020701	ENSCAFG00845020798 #13	HMBOX1 (ENSCAFG00845021327) #14	INTS9 (ENSCAFG00845021872) #15	EXTL3 (ENSCAFG00845022066) #16	FZD3 (ENSCAFG00845022244) #17	FBXO16 (ENSCAFG00845022415) #18	ZNF395 (ENSCAFG00845008517) #19	PNOC (ENSCAFG00845008618) #20	ENSCAFG00845008692	ELP3 (ENSCAFG00845008841) #21	NUGGC (ENSCAFG00845009140) #22	SCARA5 (ENSCAFG00845009520) #23	ENSCAFG00845009826	ESCO2 (ENSCAFG00845009996) #24	CCDC25 (ENSCAFG00845010181) #25	SCARA3 (ENSCAFG00845010317) #26	CLU (ENSCAFG00845010565) #27	ENSCAFG00845010841 #28	EPHX2 (ENSCAFG00845011024) #30	CHRNA2 (ENSCAFG00845011451) #31	PTK2B (ENSCAFG00845011700) #32	TRIM35 (ENSCAFG00845012423) #33	ENSCAFG00845012522	STMN4 (ENSCAFG00845012672) #34	ADRA1A (ENSCAFG00845012931)	DPYSL2 (ENSCAFG00845013099)
Red fox	MODERN SPECIES	67	PRSS55 (ENSVVUG00000002362) #9	ENSVVUG00000002367 #10	ENSVVUG00000002373	ENSVVUG00000002393	ENSVVUG00000002460	MSRA (ENSVVUG00000002475) #12	KIF13B (ENSVVUG00000002590) #13	HMBOX1 (ENSVVUG00000003129) #14	INTS9 (ENSVVUG00000003168) #15	EXTL3 (ENSVVUG00000003194) #16	FZD3 (ENSVVUG00000003219) #17	FBXO16 (ENSVVUG00000003232) #18	ZNF395 (ENSVVUG00000003247) #19	PNOC (ENSVVUG00000003259) #20	ELP3 (ENSVVUG00000003271) #21	NUGGC (ENSVVUG00000003454) #22	SCARA5 (ENSVVUG00000003462) #23	PBK (ENSVVUG00000003472)	ENSVVUG00000003476	ESCO2 (ENSVVUG00000003477) #24	ENSVVUG00000003486 #25	SCARA3 (ENSVVUG00000003490) #26	CLU (ENSVVUG00000003495) #27	ENSVVUG00000003499 #28	EPHX2 (ENSVVUG00000003509) #30	CHRNA2 (ENSVVUG00000003529) #31	PTK2B (ENSVVUG00000003546) #32	TRIM35 (ENSVVUG00000003575) #33	STMN4 (ENSVVUG00000003585) #34	ADRA1A (ENSVVUG00000003602)	ENSVVUG00000003623
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159152.d	ENSGT00940000158107	ENSGT00390000015489.q.a.a.b
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000164622	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159152.d	ENSGT00940000158107	ENSGT00390000015489.q.a.a.b
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000164622	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159152.d	ENSGT00940000158107	ENSGT00390000015489.q.a.a.b
leopard	MODERN SPECIES	6	PINX1 (ENSPPRG00000011818) #7	SOX7 (ENSPPRG00000012019)	C8orf74 (ENSPPRG00000012122) #8	PRSS55 (ENSPPRG00000012714) #9	ENSPPRG00000013777	MSRA (ENSPPRG00000018518) #12	ENSPPRG00000022622 #13	HMBOX1 (ENSPPRG00000003376) #14	INTS9 (ENSPPRG00000005064) #15	EXTL3 (ENSPPRG00000005912) #16	FZD3 (ENSPPRG00000006050) #17	FBXO16 (ENSPPRG00000007009) #18	ZNF395 (ENSPPRG00000008303) #19	PNOC (ENSPPRG00000008661) #20	ELP3 (ENSPPRG00000010984) #21	NUGGC (ENSPPRG00000012192) #22	SCARA5 (ENSPPRG00000013681) #23	PBK (ENSPPRG00000014626)	ESCO2 (ENSPPRG00000017551) #24	CCDC25 (ENSPPRG00000020269) #25	SCARA3 (ENSPPRG00000022181) #26	CLU (ENSPPRG00000023295) #27	ENSPPRG00000022640 #28	EPHX2 (ENSPPRG00000000549) #30	CHRNA2 (ENSPPRG00000001723) #31	PTK2B (ENSPPRG00000007277) #32	TRIM35 (ENSPPRG00000008006) #33	STMN4 (ENSPPRG00000009329) #34	RNF122 (ENSPPRG00000009660)	DUSP26 (ENSPPRG00000009759)	ENSPPRG00000016166
lion	MODERN SPECIES	4	C8orf74 (ENSPLOG00000000422) #8	ENSPLOG00000000405	PRSS55 (ENSPLOG00000000388) #9	PRSS51 (ENSPLOG00000000373) ##9	MSRA (ENSPLOG00000000334) #12	ENSPLOG00000000291 #13	HMBOX1 (ENSPLOG00000000271) #14	INTS9 (ENSPLOG00000000238) #15	EXTL3 (ENSPLOG00000000205) #16	FZD3 (ENSPLOG00000000194) #17	FBXO16 (ENSPLOG00000000175) #18	ZNF395 (ENSPLOG00000000156) #19	PNOC (ENSPLOG00000000143) #20	ENSPLOG00000000137	ELP3 (ENSPLOG00000000115) #21	NUGGC (ENSPLOG00000005183) #22	PBK (ENSPLOG00000005137)	ESCO2 (ENSPLOG00000005098) #24	CCDC25 (ENSPLOG00000005060) #25	SCARA3 (ENSPLOG00000005033) #26	CLU (ENSPLOG00000004952) #27	ENSPLOG00000004928 #28	EPHX2 (ENSPLOG00000004827) #30	CHRNA2 (ENSPLOG00000004735) #31	PTK2B (ENSPLOG00000004681) #32	TRIM35 (ENSPLOG00000004657) #33	STMN4 (ENSPLOG00000004643) #34	RNF122 (ENSPLOG00000004628)	DUSP26 (ENSPLOG00000004624)	ENSPLOG00000004619	UNC5D (ENSPLOG00000004558)
Tiger	MODERN SPECIES	550	PINX1 (ENSPTIG00000004845) #7	SOX7 (ENSPTIG00000003802)	C8orf74 (ENSPTIG00000022006) #8	PRSS55 (ENSPTIG00000021826) #9	ENSPTIG00000021489	MSRA (ENSPTIG00000018944) #12	HMBOX1 (ENSPTIG00000002489) #14	INTS9 (ENSPTIG00000018770) #15	EXTL3 (ENSPTIG00000018033) #16	FZD3 (ENSPTIG00000017535) #17	FBXO16 (ENSPTIG00000015539) #18	ZNF395 (ENSPTIG00000014215) #19	PNOC (ENSPTIG00000013469) #20	ENSPTIG00000013248	ELP3 (ENSPTIG00000010521) #21	NUGGC (ENSPTIG00000008187) #22	SCARA5 (ENSPTIG00000007329) #23	PBK (ENSPTIG00000006211)	ESCO2 (ENSPTIG00000004922) #24	CCDC25 (ENSPTIG00000019790) #25	SCARA3 (ENSPTIG00000018843) #26	CLU (ENSPTIG00000018269) #27	ENSPTIG00000016376 #28	EPHX2 (ENSPTIG00000006801) #30	CHRNA2 (ENSPTIG00000018878) #31	PTK2B (ENSPTIG00000009077) #32	TRIM35 (ENSPTIG00000008311) #33	STMN4 (ENSPTIG00000006056) #34	RNF122 (ENSPTIG00000003477)	DUSP26 (ENSPTIG00000000562)	ENSPTIG00000006393
Cat	MODERN SPECIES	235	CB1H8orf74 (ENSFCAG00000011260) #8	PRSS55 (ENSFCAG00000010556) #9	PRSS51 (ENSFCAG00000024892) ##9	ENSFCAG00000050522	MSRA (ENSFCAG00000011865) #12	KIF13B (ENSFCAG00000004923) #13	HMBOX1 (ENSFCAG00000022672) #14	INTS9 (ENSFCAG00000003520) #15	EXTL3 (ENSFCAG00000022501) #16	FZD3 (ENSFCAG00000024323) #17	FBXO16 (ENSFCAG00000019020) #18	ZNF395 (ENSFCAG00000030743) #19	PNOC (ENSFCAG00000023618) #20	ENSFCAG00000027676	ELP3 (ENSFCAG00000025121) #21	NUGGC (ENSFCAG00000002892) #22	SCARA5 (ENSFCAG00000031961) #23	PBK (ENSFCAG00000014427)	ESCO2 (ENSFCAG00000014426) #24	CCDC25 (ENSFCAG00000037880) #25	SCARA3 (ENSFCAG00000014424) #26	CLU (ENSFCAG00000014423) #27	GULO (ENSFCAG00000023835) #28	EPHX2 (ENSFCAG00000014422) #30	CHRNA2 (ENSFCAG00000028158) #31	PTK2B (ENSFCAG00000014420) #32	TRIM35 (ENSFCAG00000025046) #33	STMN4 (ENSFCAG00000014418) #34	RNF122 (ENSFCAG00000025628)	DUSP26 (ENSFCAG00000040176)	ENSFCAG00000034993
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b
Equus	ANCESTRAL SPECIES	24	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b ##9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b
Donkey	MODERN SPECIES	22	PRSS55 (ENSEASG00005016390) #9	ENSEASG00005016388 ##9	ENSEASG00005016386	ENSEASG00005016382 #12	ENSEASG00005033370	ENSEASG00005016368 #13	ENSEASG00005037289	HMBOX1 (ENSEASG00005016360) #14	INTS9 (ENSEASG00005016353) #15	EXTL3 (ENSEASG00005016347) #16	FZD3 (ENSEASG00005016341) #17	FBXO16 (ENSEASG00005016336) #18	ZNF395 (ENSEASG00005016329) #19	PNOC (ENSEASG00005016327) #20	ELP3 (ENSEASG00005016324) #21	NUGGC (ENSEASG00005016323) #22	SCARA5 (ENSEASG00005016320) #23	PBK (ENSEASG00005016314)	ESCO2 (ENSEASG00005016302) #24	CCDC25 (ENSEASG00005037176) #25	SCARA3 (ENSEASG00005016295) #26	CLU (ENSEASG00005016294) #27	ENSEASG00005016285 #28	EPHX2 (ENSEASG00005016280) #30	CHRNA2 (ENSEASG00005016279) #31	PTK2B (ENSEASG00005015727) #32	TRIM35 (ENSEASG00005015643) #33	STMN4 (ENSEASG00005015641) #34	ADRA1A (ENSEASG00005015639)	DPYSL2 (ENSEASG00005015636)	BNIP3L (ENSEASG00005015633)
Horse	MODERN SPECIES	11	C2H8orf74 (ENSECAG00000012975) #8	ENSECAG00000030856	PRSS55 (ENSECAG00000012775) #9	ENSECAG00000012766 #10	ENSECAG00000038501	MSRA (ENSECAG00000001697) #12	KIF13B (ENSECAG00000008773) #13	HMBOX1 (ENSECAG00000008240) #14	INTS9 (ENSECAG00000019848) #15	EXTL3 (ENSECAG00000018661) #16	FZD3 (ENSECAG00000018292) #17	FBXO16 (ENSECAG00000017125) #18	ZNF395 (ENSECAG00000015884) #19	PNOC (ENSECAG00000015761) #20	ELP3 (ENSECAG00000014859) #21	NUGGC (ENSECAG00000014074) #22	SCARA5 (ENSECAG00000013893) #23	PBK (ENSECAG00000013223)	ESCO2 (ENSECAG00000012899) #24	CCDC25 (ENSECAG00000011924) #25	SCARA3 (ENSECAG00000011350) #26	CLU (ENSECAG00000007010) #27	GULO (ENSECAG00000003068) #28	EPHX2 (ENSECAG00000023444) #30	CHRNA2 (ENSECAG00000022609) #31	PTK2B (ENSECAG00000018924) #32	TRIM35 (ENSECAG00000018548) #33	STMN4 (ENSECAG00000044039) #34	ADRA1A (ENSECAG00000015917)	DPYSL2 (ENSECAG00000008662)	PNMA2 (ENSECAG00000008517)
Chiroptera	ANCESTRAL SPECIES	61	ENSGT00940000161092	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34
Microchiroptera	ANCESTRAL SPECIES	52	ENSGT00940000161092	ENSGT00940000154323.b #8	ENSGT00940000154242.a	ENSGT00940000156020.b.a #9	ENSGT00940000154999.B.k	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34
Greater horseshoe bat	MODERN SPECIES	9	SOX7 (ENSRFEG00010016358)	C8orf74 (ENSRFEG00010016274) #8	ENSRFEG00010015733	MSRA (ENSRFEG00010015483) #12	ENSRFEG00010015448	ENSRFEG00010015406	KIF13B (ENSRFEG00010015351) #13	HMBOX1 (ENSRFEG00010015241) #14	INTS9 (ENSRFEG00010015122) #15	EXTL3 (ENSRFEG00010015082) #16	FZD3 (ENSRFEG00010015031) #17	ENSRFEG00010014701 #18	ZNF395 (ENSRFEG00010014637) #19	PNOC (ENSRFEG00010014558) #20	ELP3 (ENSRFEG00010014240) #21	NUGGC (ENSRFEG00010014148) #22	SCARA5 (ENSRFEG00010014042) #23	ENSRFEG00010013982	PBK (ENSRFEG00010013905)	ESCO2 (ENSRFEG00010013852) #24	CCDC25 (ENSRFEG00010013725) #25	SCARA3 (ENSRFEG00010013596) #26	CLU (ENSRFEG00010013527) #27	ENSRFEG00010013238 #30	CHRNA2 (ENSRFEG00010013124) #31	PTK2B (ENSRFEG00010012994) #32	RAPGEF2 (ENSRFEG00010011724)	C4orf45 (ENSRFEG00010011590)	FNIP2 (ENSRFEG00010011548)	ENSRFEG00010011368	ETFDH (ENSRFEG00010011182)
Atlantogenata	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Armadillo	MODERN SPECIES	1639																ENSDNOG00000030852 #22	ENSDNOG00000041876	ENSDNOG00000044813	ENSDNOG00000044249	PDIA6 (ENSDNOG00000004109)	ATP6V1C2 (ENSDNOG00000004101)	NOL10 (ENSDNOG00000003577)	ENSDNOG00000018474	HPCAL1 (ENSDNOG00000040038)
Afrotheria	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Afrotheria_a	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Hyrax	MODERN SPECIES	6697																NUGGC (ENSPCAG00000014520) #22
Marsupialia	ANCESTRAL SPECIES	15	ENSGT01030000234539.b.b.a	ENSGT00950000183087.B.v.a	ENSGT00900000140979.a.b	ENSGT00950000183162.a.b	ENSGT00940000161587	ENSGT00390000011010.b	ENSGT00530000064017.b	ENSGT00940000159885	ENSGT00940000160547	ENSGT00940000161920	ENSGT00940000161102	ENSGT00940000156317	ENSGT00940000155596	ENSGT00940000161318	ENSGT00390000007636	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT01030000234539.b.b.a	ENSGT00950000183087.B.v.a	ENSGT00900000140979.a.b	ENSGT00950000183162.a.b	ENSGT00940000161587	ENSGT00390000011010.b	ENSGT00530000064017.b	ENSGT00940000159885	ENSGT00940000160547	ENSGT00940000161920	ENSGT00940000161102	ENSGT00940000156317	ENSGT00940000155596	ENSGT00940000161318	ENSGT00390000007636	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614.e #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT01030000234539.b.b.a	ENSGT00950000183087.B.v.a	ENSGT00900000140979.a.b	ENSGT00950000183162.a.b	ENSGT00940000161587	ENSGT00390000011010.b	ENSGT00530000064017.b	ENSGT00940000159885	ENSGT00940000160547	ENSGT00940000161920	ENSGT00940000161102	ENSGT00940000156317	ENSGT00940000155596	ENSGT00940000161318.s	ENSGT00390000007636	ENSGT00390000007091 #22	ENSGT00940000164057	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614.e #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00950000183021.b	ENSGT00500000044959
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT01030000234539.b.b.a	ENSGT00950000183087.B.v.a	ENSGT00900000140979.a.b	ENSGT00950000183162.a.b	ENSGT00940000161587	ENSGT00390000011010.b.a	ENSGT00530000064017.b	ENSGT00940000159885	ENSGT00940000160547	ENSGT00940000161920	ENSGT00940000161102	ENSGT00940000156317	ENSGT00940000155596	ENSGT00940000161318.s	ENSGT00390000007636	ENSGT00390000007091 #22	ENSGT00940000164057	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00510000049722 #28	ENSGT00940000158614.e #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00950000183021.b	ENSGT00500000044959
Common wonbat	MODERN SPECIES	35	ZMIZ2 (ENSVURG00010003581)	ENSVURG00010003702	H2AZ2 (ENSVURG00010003716)	PURB (ENSVURG00010003726)	ACTR1B (ENSVURG00010003742)	ENSVURG00010003754	ENSVURG00010003765	SEMA4C (ENSVURG00010003786)	ANKRD39 (ENSVURG00010003806)	ANKRD23 (ENSVURG00010003814)	ENSVURG00010003875	CNNM4 (ENSVURG00010003879)	LMAN2L (ENSVURG00010003890)	ENSVURG00010003915	KANSL3 (ENSVURG00010003969)	NUGGC (ENSVURG00010004038) #22	PBK (ENSVURG00010004136)	ESCO2 (ENSVURG00010004147) #24	CCDC25 (ENSVURG00010004173) #25	SCARA3 (ENSVURG00010004200) #26	CLU (ENSVURG00010004214) #27	ENSVURG00010004227 #28	EPHX2 (ENSVURG00010004257) #30	ENSVURG00010004303 #32
Tasmanian devil	MODERN SPECIES	1	DDX56 (ENSSHAG00000016615)	OGDH (ENSSHAG00000016718)	ZMIZ2 (ENSSHAG00000016952)	ENSSHAG00000017062	ENSSHAG00000017127	ENSSHAG00000017342	ENSSHAG00000022425	ENSSHAG00000022480	SEMA4C (ENSSHAG00000017454)	ANKRD23 (ENSSHAG00000028247)	CNNM3 (ENSSHAG00000017697)	CNNM4 (ENSSHAG00000021307)	LMAN2L (ENSSHAG00000017859)	ENSSHAG00000017894	ENSSHAG00000017986	ENSSHAG00000018088 #22	SCARA5 (ENSSHAG00000018224) #23	PBK (ENSSHAG00000018381)	ESCO2 (ENSSHAG00000018411) #24	CCDC25 (ENSSHAG00000018434) #25	SCARA3 (ENSSHAG00000018558) #26	CLU (ENSSHAG00000028360) #27	ENSSHAG00000006234 #28	ENSSHAG00000022526 #30	ENSSHAG00000002604 #30	CHRNA2 (ENSSHAG00000020533) #31	PTK2B (ENSSHAG00000029715) #32	ENSSHAG00000023575 #33	ENSSHAG00000007155 #34	ENSSHAG00000003234	PTRHD1 (ENSSHAG00000005774)
Opossum	MODERN SPECIES		ZMIZ2 (ENSMODG00000016099)	ENSMODG00000016089	H2AZ2 (ENSMODG00000038487)	PURB (ENSMODG00000016071)	ACTR1B (ENSMODG00000016067)	COX5B (ENSMODG00000016060)	ENSMODG00000016031	SEMA4C (ENSMODG00000023231)	ANKRD39 (ENSMODG00000041663)	ANKRD23 (ENSMODG00000016047)	CNNM3 (ENSMODG00000016039)	CNNM4 (ENSMODG00000016026)	LMAN2L (ENSMODG00000016022)	ENSMODG00000016016	KANSL3 (ENSMODG00000015996)	NUGGC (ENSMODG00000015992) #22	SCARA5 (ENSMODG00000015990) #23	CCDC25 (ENSMODG00000015976) #25	ENSMODG00000015984	ENSMODG00000037017	SCARA3 (ENSMODG00000015965) #26	ENSMODG00000015960 #27	ENSMODG00000015957 #28	ENSMODG00000049961	EPHX2 (ENSMODG00000015948) #30	ENSMODG00000015951	CHRNA2 (ENSMODG00000015940) #31	PTK2B (ENSMODG00000015932) #32	TRIM35 (ENSMODG00000015914) #33	STMN4 (ENSMODG00000015911) #34	NCOA1 (ENSMODG00000015907)
Platypus	MODERN SPECIES	20	ENSOANG00000037767	FAM166C (ENSOANG00000000519)	OTOF (ENSOANG00000000520)	DRC1 (ENSOANG00000000522)	SELENOI (ENSOANG00000000523)	ADGRF3 (ENSOANG00000015827)	HADHB (ENSOANG00000015828)	HADHA (ENSOANG00000015830)	GAREM2 (ENSOANG00000015831)	RAB10 (ENSOANG00000015832)	KIF3C (ENSOANG00000015833)	ASXL2 (ENSOANG00000015834)	ENSOANG00000015835	DNMT3A (ENSOANG00000015836)	ENSOANG00000022083	NUGGC (ENSOANG00000015837) #22	SCARA5 (ENSOANG00000015838) #23	PBK (ENSOANG00000015839)	ENSOANG00000015840 #24	CCDC25 (ENSOANG00000000791) #25	SCARA3 (ENSOANG00000001256) #26	ENSOANG00000001254 #27	POLR3F (ENSOANG00000001253)	ENSOANG00000001252	KAT14 (ENSOANG00000001251)	PET117 (ENSOANG00000049166)	OVOL2 (ENSOANG00000001250)	MGME1 (ENSOANG00000038109)	SNX5 (ENSOANG00000040202)	ENSOANG00000037227	ENSOANG00000001247
Sauria	ANCESTRAL SPECIES	1	ENSGT00940000157136 #19	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #34	ENSGT00940000160868 #33	ENSGT00940000157269.a.a #32	ENSGT00940000158299 #31	ENSGT00940000158614 #30	ENSGT00510000049722 #28	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00950000185082	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A	ENSGT00390000008161.b	ENSGT00940000161541
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000157136 #19	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #34	ENSGT00940000160868 #33	ENSGT00940000157269.a.a #32	ENSGT00940000158299 #31	ENSGT00940000158614 #30	ENSGT00510000049722 #28	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00950000185082	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A	ENSGT00390000008161.b	ENSGT00940000161541
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000157136 #19	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #34	ENSGT00940000160868 #33	ENSGT00940000157269.a.a #32	ENSGT00940000158299 #31	ENSGT00940000158614 #30	ENSGT00510000049722 #28	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00950000185082	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A	ENSGT00390000008161.b	ENSGT01030000234626.A.b
Aves	ANCESTRAL SPECIES	38	ENSGT00940000157136 #19	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #34	ENSGT00940000160868 #33	ENSGT00940000157269.a.a #32	ENSGT00940000158299 #31	ENSGT00940000158614 #30	ENSGT00510000049722 #28	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00950000185082	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT00530000063668.B #27	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A	ENSGT00940000154393.h	ENSGT00940000154393.g.a	ENSGT01030000234626.A.b
Neognathae	ANCESTRAL SPECIES	2	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133	ENSGT00390000002143.b	ENSGT00390000016811	ENSGT00940000164041	ENSGT01030000234597.a.b.a #34	ENSGT00940000160868 #33	ENSGT00940000157269.a.a.c.a #32	ENSGT00940000157269.a.a.d #32	ENSGT00940000158299 #31	ENSGT00940000158614 #30	ENSGT00510000049722 #28	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00950000185082	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT01100000263560.b	ENSGT00530000063668.B #27	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A	ENSGT00940000154393.h	ENSGT00940000154393.g.a
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000164272	ENSGT00520000055578.a.b	ENSGT00940000153739.a.b	ENSGT00940000177261	ENSGT00940000156975.u	ENSGT00530000063834.e.b	ENSGT00940000154677	ENSGT01030000234626.A.b	ENSGT00390000008161.b	ENSGT00940000157269.a.a.d #32	ENSGT00940000158299 #31	ENSGT00940000158614 #30	ENSGT00510000049722 #28	ENSGT00940000164057.a	ENSGT00940000164057.b	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT01100000263560.b.b	ENSGT00530000063668.B #27	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000164041
Phasianidae	ANCESTRAL SPECIES	28	ENSGT00940000164272	ENSGT00520000055578.a.b	ENSGT00940000153739.a.b	ENSGT00940000177261	ENSGT00940000156975.u	ENSGT00530000063834.e.b	ENSGT00940000154677	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000157269.a.a.d #32	ENSGT00940000158299 #31	ENSGT00940000158614 #30	ENSGT00510000049722 #28	ENSGT00940000164057.a	ENSGT00940000164057.b	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT01100000263560.b.b	ENSGT00530000063668.B #27	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000164041
Phasianidae_b	ANCESTRAL SPECIES	29	ENSGT00940000164272	ENSGT00520000055578.a.b	ENSGT00940000153739.a.b	ENSGT00940000177261	ENSGT00940000156975.u	ENSGT00530000063834.e.b	ENSGT00940000154677	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000157269.a.a.d #32	ENSGT00940000158299 #31	ENSGT00940000158614 #30	ENSGT00510000049722 #28	ENSGT00940000164057.a	ENSGT00940000164057.b	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839	ENSGT00940000158598 #24	ENSGT00390000004380 #25	ENSGT00940000158238 #26	ENSGT01100000263560.b.b	ENSGT00530000063668.B #27	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00390000018634	ENSGT00940000155086.C	ENSGT00940000153804.A	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000164041
Turkey	MODERN SPECIES	11	DNMT3A (ENSMGAG00000014078)	ENSMGAG00000014080	ASXL2 (ENSMGAG00000014086)	ENSMGAG00000019139	RAB10 (ENSMGAG00000014088)	GAREM2 (ENSMGAG00000022446)	HADHA (ENSMGAG00000014090)	HADHB (ENSMGAG00000014094)	ENSMGAG00000015651	ENSMGAG00000022025	SELENOI (ENSMGAG00000014102)	PTK2B (ENSMGAG00000014100) #32	ENSMGAG00000014105 #31	EPHX2 (ENSMGAG00000014107) #30	ENSMGAG00000014114 #28	NUGGC (ENSMGAG00000020967) #22	SCARA5 (ENSMGAG00000014119) #23	PBK (ENSMGAG00000014121)	ESCO2 (ENSMGAG00000014122) #24	CCDC25 (ENSMGAG00000014123) #25	SCARA3 (ENSMGAG00000014125) #26	ENSMGAG00000022703	CLU (ENSMGAG00000014126) #27	SLC35F6 (ENSMGAG00000014128)	KCNK3 (ENSMGAG00000017098)	FAM166C (ENSMGAG00000020358)	OTOF (ENSMGAG00000014133)	ENSMGAG00000014136	ENSMGAG00000014139 #33	ENSMGAG00000017031 #34	ENSMGAG00000014141
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Reedfish	DUPLICATION
Reedfish	DUPLICATION
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	5	clic4 (ENSECRG00000015435)	SRRM1 (ENSECRG00000015509)	rcan3 (ENSECRG00000015565)	nipal3 (ENSECRG00000015606)	ENSECRG00000015656	ENSECRG00000015687	ENSECRG00000015726	ENSECRG00000015770	fndc5b (ENSECRG00000015820)	ENSECRG00000015856	olig4 (ENSECRG00000015914)	bsdc1 (ENSECRG00000015930)	hdac1 (ENSECRG00000016007)	marcksl1a (ENSECRG00000016275)	ENSECRG00000016299 #22	ENSECRG00000016343 #22	cnr2 (ENSECRG00000016390)	akirin1 (ENSECRG00000016404)	rhbdl2 (ENSECRG00000016429)	ENSECRG00000016459	gja9b (ENSECRG00000016486)	mycbp (ENSECRG00000016519)	rragca (ENSECRG00000016535)	pou3f1 (ENSECRG00000016559)	utp11 (ENSECRG00000016587)	fhl3b (ENSECRG00000016619)	meaf6 (ENSECRG00000016666)	snip1 (ENSECRG00000016732)	dnali1 (ENSECRG00000016747)	gnl2 (ENSECRG00000016774)	ENSECRG00000016807
Reedfish	MODERN SPECIES	5	runx3 (ENSECRG00000015396)	clic4 (ENSECRG00000015435)	SRRM1 (ENSECRG00000015509)	rcan3 (ENSECRG00000015565)	nipal3 (ENSECRG00000015606)	ENSECRG00000015656	ENSECRG00000015687	ENSECRG00000015726	ENSECRG00000015770	fndc5b (ENSECRG00000015820)	ENSECRG00000015856	olig4 (ENSECRG00000015914)	bsdc1 (ENSECRG00000015930)	hdac1 (ENSECRG00000016007)	marcksl1a (ENSECRG00000016275)	ENSECRG00000016299 #22	ENSECRG00000016343 #22	cnr2 (ENSECRG00000016390)	akirin1 (ENSECRG00000016404)	rhbdl2 (ENSECRG00000016429)	ENSECRG00000016459	gja9b (ENSECRG00000016486)	mycbp (ENSECRG00000016519)	rragca (ENSECRG00000016535)	pou3f1 (ENSECRG00000016559)	utp11 (ENSECRG00000016587)	fhl3b (ENSECRG00000016619)	meaf6 (ENSECRG00000016666)	snip1 (ENSECRG00000016732)	dnali1 (ENSECRG00000016747)	gnl2 (ENSECRG00000016774)
Reedfish	DUPLICATION
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	322																ENSECRG00000018016 #22	ENSECRG00000017991
Reedfish	MODERN SPECIES	5	SRRM1 (ENSECRG00000015509)	clic4 (ENSECRG00000015435)	runx3 (ENSECRG00000015396)	syf2 (ENSECRG00000015362)	ENSECRG00000015299	mgst3b (ENSECRG00000015269)	tmem50a (ENSECRG00000015237)	rhd (ENSECRG00000015196)	maco1b (ENSECRG00000015122)	ldlrap1a (ENSECRG00000014859)	ENSECRG00000014752 #22	ENSECRG00000014718	ENSECRG00000014692	ENSECRG00000013636 #22	ENSECRG00000013613 #22	ENSECRG00000013593 #22	ENSECRG00000013571	lck (ENSECRG00000013554)	FAM167B (ENSECRG00000013542)	zgc:154055 (ENSECRG00000013523)	eif3i (ENSECRG00000013499)	tmem234 (ENSECRG00000013485)	ENSECRG00000013454	ENSECRG00000013433	heyl (ENSECRG00000013419)	zbtb8b (ENSECRG00000013407)	zbtb8a (ENSECRG00000013399)	fuca1.2 (ENSECRG00000013380)	hmgcl (ENSECRG00000013363)	gale (ENSECRG00000013337)	ENSECRG00000013319
Reedfish	MODERN SPECIES	5	nipal3 (ENSECRG00000015606)	rcan3 (ENSECRG00000015565)	SRRM1 (ENSECRG00000015509)	clic4 (ENSECRG00000015435)	runx3 (ENSECRG00000015396)	syf2 (ENSECRG00000015362)	ENSECRG00000015299	mgst3b (ENSECRG00000015269)	tmem50a (ENSECRG00000015237)	rhd (ENSECRG00000015196)	maco1b (ENSECRG00000015122)	ldlrap1a (ENSECRG00000014859)	ENSECRG00000014752 #22	ENSECRG00000014718	ENSECRG00000014692	ENSECRG00000013636 #22	ENSECRG00000013613 #22	ENSECRG00000013593 #22	ENSECRG00000013571	lck (ENSECRG00000013554)	FAM167B (ENSECRG00000013542)	zgc:154055 (ENSECRG00000013523)	eif3i (ENSECRG00000013499)	tmem234 (ENSECRG00000013485)	ENSECRG00000013454	ENSECRG00000013433	heyl (ENSECRG00000013419)	zbtb8b (ENSECRG00000013407)	zbtb8a (ENSECRG00000013399)	fuca1.2 (ENSECRG00000013380)	hmgcl (ENSECRG00000013363)
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	5	ENSECRG00000015726	ENSECRG00000015687	ENSECRG00000015656	nipal3 (ENSECRG00000015606)	rcan3 (ENSECRG00000015565)	SRRM1 (ENSECRG00000015509)	clic4 (ENSECRG00000015435)	runx3 (ENSECRG00000015396)	syf2 (ENSECRG00000015362)	ENSECRG00000015299	mgst3b (ENSECRG00000015269)	tmem50a (ENSECRG00000015237)	rhd (ENSECRG00000015196)	maco1b (ENSECRG00000015122)	ldlrap1a (ENSECRG00000014859)	ENSECRG00000014752 #22	ENSECRG00000014718	ENSECRG00000014692	ENSECRG00000013636 #22	ENSECRG00000013613 #22	ENSECRG00000013593 #22	ENSECRG00000013571	lck (ENSECRG00000013554)	FAM167B (ENSECRG00000013542)	zgc:154055 (ENSECRG00000013523)	eif3i (ENSECRG00000013499)	tmem234 (ENSECRG00000013485)	ENSECRG00000013454	ENSECRG00000013433	heyl (ENSECRG00000013419)	zbtb8b (ENSECRG00000013407)
Reedfish	MODERN SPECIES	5	rcan3 (ENSECRG00000015565)	SRRM1 (ENSECRG00000015509)	clic4 (ENSECRG00000015435)	runx3 (ENSECRG00000015396)	syf2 (ENSECRG00000015362)	ENSECRG00000015299	mgst3b (ENSECRG00000015269)	tmem50a (ENSECRG00000015237)	rhd (ENSECRG00000015196)	maco1b (ENSECRG00000015122)	ldlrap1a (ENSECRG00000014859)	ENSECRG00000014752 #22	ENSECRG00000014718	ENSECRG00000014692	ENSECRG00000013636 #22	ENSECRG00000013613 #22	ENSECRG00000013593 #22	ENSECRG00000013571	lck (ENSECRG00000013554)	FAM167B (ENSECRG00000013542)	zgc:154055 (ENSECRG00000013523)	eif3i (ENSECRG00000013499)	tmem234 (ENSECRG00000013485)	ENSECRG00000013454	ENSECRG00000013433	heyl (ENSECRG00000013419)	zbtb8b (ENSECRG00000013407)	zbtb8a (ENSECRG00000013399)	fuca1.2 (ENSECRG00000013380)	hmgcl (ENSECRG00000013363)	gale (ENSECRG00000013337)
Neopterygii	ANCESTRAL SPECIES	48																ENSGT00390000007091 #22	ENSGT00940000157970	ENSGT00940000158233	ENSGT00940000159501	ENSGT00730000111080.b	ENSGT00940000155017	ENSGT00940000156598.c.b	ENSGT00390000017845	ENSGT00940000165706	ENSGT00940000157715	ENSGT00950000182844.a.b	ENSGT00390000016613.c	ENSGT00940000157118.c.a	ENSGT00390000004923.A	ENSGT00940000166262	ENSGT00390000009361
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	672	STK40 (ENSLOCG00000003116)	eva1bb (ENSLOCG00000003102)	rpa2 (ENSLOCG00000003082)	THEMIS2 (ENSLOCG00000003069)	ppp1r8a (ENSLOCG00000003050)	med18 (ENSLOCG00000003042)	foxo6b (ENSLOCG00000003028)	SCMH1 (ENSLOCG00000003009)	ENSLOCG00000002995	cited4b (ENSLOCG00000018276)	sh3d21 (ENSLOCG00000002978)	ENSLOCG00000002939	map7d1a (ENSLOCG00000002929)	MAP3K6 (ENSLOCG00000002899)	stpg1 (ENSLOCG00000002882)	ENSLOCG00000002868 #22	ENSLOCG00000002832	nipal3 (ENSLOCG00000002817)	rcan3 (ENSLOCG00000002797)	SRRM1 (ENSLOCG00000002785)	clic4 (ENSLOCG00000002762)	runx3 (ENSLOCG00000002744)	syf2 (ENSLOCG00000002728)	mgst3b (ENSLOCG00000002714)	tmem50a (ENSLOCG00000002702)	rhd (ENSLOCG00000002671)	maco1b (ENSLOCG00000002652)	ldlrap1b (ENSLOCG00000002632)	fndc5b (ENSLOCG00000002622)	ENSLOCG00000002592	olig4 (ENSLOCG00000018275)
Spotted gar	MODERN SPECIES	373																ENSLOCG00000000491 #22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	6	qkia (ENSSFOG00015001662)	ENSSFOG00015027751	ENSSFOG00015001620	ctsl.1 (ENSSFOG00015001591)	vgll2b (ENSSFOG00015001571)	ythdf2 (ENSSFOG00015001525)	ENSSFOG00015025543	id3 (ENSSFOG00015001505)	ENSSFOG00015001250	asap3 (ENSSFOG00015001224)	ENSSFOG00015031944	rps6ka1 (ENSSFOG00015001107)	ENSSFOG00015030485	cnksr1 (ENSSFOG00015027611)	ENSSFOG00015029207 #22	ENSSFOG00015023994 #22	GRHL3 (ENSSFOG00015024000)	nipal3 (ENSSFOG00015028672)	rcan3 (ENSSFOG00015026125)	srrm1 (ENSSFOG00015024011)	clic4 (ENSSFOG00015026867)	runx3 (ENSSFOG00015032469)	syf2 (ENSSFOG00015023647)	ENSSFOG00015023643	mgst3b (ENSSFOG00015023642)	tmem50a (ENSSFOG00015031463)	rhd (ENSSFOG00015023626)	maco1b (ENSSFOG00015023623)	ldlrap1b (ENSSFOG00015033121)	FNDC5 (ENSSFOG00015027404)	ENSSFOG00015023609
Asian bonytongue	MODERN SPECIES	6	pacrg (ENSSFOG00015001711)	qkia (ENSSFOG00015001662)	ENSSFOG00015027751	ENSSFOG00015001620	ctsl.1 (ENSSFOG00015001591)	vgll2b (ENSSFOG00015001571)	ythdf2 (ENSSFOG00015001525)	ENSSFOG00015025543	id3 (ENSSFOG00015001505)	ENSSFOG00015001250	asap3 (ENSSFOG00015001224)	ENSSFOG00015031944	rps6ka1 (ENSSFOG00015001107)	ENSSFOG00015030485	cnksr1 (ENSSFOG00015027611)	ENSSFOG00015029207 #22	ENSSFOG00015023994 #22	GRHL3 (ENSSFOG00015024000)	nipal3 (ENSSFOG00015028672)	rcan3 (ENSSFOG00015026125)	srrm1 (ENSSFOG00015024011)	clic4 (ENSSFOG00015026867)	runx3 (ENSSFOG00015032469)	syf2 (ENSSFOG00015023647)	ENSSFOG00015023643	mgst3b (ENSSFOG00015023642)	tmem50a (ENSSFOG00015031463)	rhd (ENSSFOG00015023626)	maco1b (ENSSFOG00015023623)	ldlrap1b (ENSSFOG00015033121)	FNDC5 (ENSSFOG00015027404)
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Euteleosteomorpha	ANCESTRAL SPECIES		ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000155366.b.a.a	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00950000182849.B.c.a.b.b	ENSGT00390000008063	ENSGT01100000263497.E.a.a	ENSGT00390000006806
Acanthomorphata	ANCESTRAL SPECIES	2	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00940000166251	ENSGT00940000166319
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00940000166251	ENSGT00940000166319
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00940000166251	ENSGT00940000166319
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251
Carangaria	ANCESTRAL SPECIES		ENSGT00390000011740	ENSGT00390000013732	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000177102	ENSGT01100000263525.a.b.a.a	ENSGT00950000183145.B.a.a.b.e.b	ENSGT00940000156038.a.a.d.a	ENSGT00950000183145.B.a.a.b.f	ENSGT01070000253775.b	ENSGT00390000013080	ENSGT00940000158204.d	ENSGT00940000164753.b	ENSGT00550000075065.b	ENSGT00940000159703	ENSGT00390000007091 #22	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b	ENSGT00950000183137.a.l
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00390000004090	ENSGT00940000155830.e.b	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319	ENSGT00390000017548.a
Turbot	MODERN SPECIES	10	ENSSMAG00000016479	dnaja3a (ENSSMAG00000016441)	vasnb (ENSSMAG00000016435)	coro7 (ENSSMAG00000016393)	glis2b (ENSSMAG00000016372)	TFAP4 (ENSSMAG00000016331)	srl (ENSSMAG00000016274)	ADCY9 (ENSSMAG00000016227)	CREBBP (ENSSMAG00000016085)	TRAP1 (ENSSMAG00000016066)	ENSSMAG00000016043	ENSSMAG00000016040	DNAAF5 (ENSSMAG00000016027)	ENSSMAG00000016015	PDGFA (ENSSMAG00000015976)	ENSSMAG00000015947 #22	ENSSMAG00000015921	ENSSMAG00000015746	ENSSMAG00000015724	ENSSMAG00000015703	ENSSMAG00000015684	ENSSMAG00000037733	ENSSMAG00000022002	ENSSMAG00000029156	mfsd13al (ENSSMAG00000015613)	ENSSMAG00000015607	ENSSMAG00000015594	ENSSMAG00000015585	ENSSMAG00000015559	ENSSMAG00000015513	anks4b (ENSSMAG00000031243)
Carangaria_A	ANCESTRAL SPECIES	12	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00390000006420	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319
Seriola	ANCESTRAL SPECIES	26	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00390000006420	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319
Greater amberjack	MODERN SPECIES	70	dnaja3a (ENSSDUG00000010916)	vasnb (ENSSDUG00000010909)	coro7 (ENSSDUG00000010876)	pam16 (ENSSDUG00000010856)	glis2b (ENSSDUG00000010848)	TFAP4 (ENSSDUG00000010824)	srl (ENSSDUG00000010808)	ADCY9 (ENSSDUG00000010766)	CREBBP (ENSSDUG00000010566)	trap1 (ENSSDUG00000010509)	ENSSDUG00000010491	GDE1 (ENSSDUG00000010467)	DNAAF5 (ENSSDUG00000010419)	prkar1b (ENSSDUG00000010360)	pdgfab (ENSSDUG00000010337)	ENSSDUG00000010293 #22	ENSSDUG00000010262	sun1b (ENSSDUG00000010161)	ENSSDUG00000010116	gprc5ba (ENSSDUG00000010096)	proza (ENSSDUG00000010065)	GPR139 (ENSSDUG00000010057)	ENSSDUG00000010039	kdelr2a (ENSSDUG00000010012)	ENSSDUG00000009998	mfsd13al (ENSSDUG00000009976)	ENSSDUG00000009959	SDR42E2 (ENSSDUG00000009931)	MOSMO (ENSSDUG00000009922)	uqcrc2a (ENSSDUG00000009858)	ENSSDUG00000009831
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	183	dnaja3a (ENSLCAG00010000244)	coro7 (ENSLCAG00010000376)	vasnb (ENSLCAG00010000500)	pam16 (ENSLCAG00010000515)	glis2b (ENSLCAG00010000532)	TFAP4 (ENSLCAG00010000547)	srl (ENSLCAG00010000569)	ADCY9 (ENSLCAG00010000579)	CREBBP (ENSLCAG00010000835)	trap1 (ENSLCAG00010001455)	MCRIP2 (ENSLCAG00010001652)	GDE1 (ENSLCAG00010001656)	DNAAF5 (ENSLCAG00010001669)	prkar1b (ENSLCAG00010001732)	pdgfab (ENSLCAG00010001964)	ENSLCAG00010001973 #22	ENSLCAG00010002007	ENSLCAG00010002010	sun1b (ENSLCAG00010002020)	ENSLCAG00010002033	gprc5ba (ENSLCAG00010002037)	proza (ENSLCAG00010002045)	GPR139 (ENSLCAG00010002052)
Barramundi perch	MODERN SPECIES	698																ENSLCAG00010002427 #22	ENSLCAG00010002412
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00390000017673.a.b	ENSGT00940000155280.f	ENSGT00940000156606	ENSGT00940000159318.n.a	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000178042	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT01100000264132	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319	ENSGT00390000017548.a
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT00390000017673.a.b	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000178042	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT01100000264132	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319	ENSGT00390000017548.a	ENSGT00940000165478
Siamese fighting fish	DUPLICATION
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	19	uqcrc2a (ENSBSLG00000011949)	MOSMO (ENSBSLG00000012392)	SDR42E2 (ENSBSLG00000012399)	CDR2 (ENSBSLG00000013033)	mfsd13al (ENSBSLG00000013076)	kdelr2a (ENSBSLG00000013132)	ENSBSLG00000013182	GPR139 (ENSBSLG00000013216)	proza (ENSBSLG00000013240)	gprc5ba (ENSBSLG00000013280)	iqck (ENSBSLG00000013305)	sun1b (ENSBSLG00000013399)	ENSBSLG00000013559	ENSBSLG00000013657 #22	ENSBSLG00000014061	ENSBSLG00000014097 #22	ENSBSLG00000014169 #22	pdgfab (ENSBSLG00000014288)	prkar1b (ENSBSLG00000014313)	DNAAF5 (ENSBSLG00000014432)	GDE1 (ENSBSLG00000014555)	GDE1 (ENSBSLG00000014573)	ENSBSLG00000014578	trap1 (ENSBSLG00000014585)	CREBBP (ENSBSLG00000014890)	ADCY9 (ENSBSLG00000016110)	srl (ENSBSLG00000016116)	TFAP4 (ENSBSLG00000016142)	glis2b (ENSBSLG00000016157)	coro7 (ENSBSLG00000016182)	vasnb (ENSBSLG00000016347)
Siamese fighting fish	MODERN SPECIES	19	glis2b (ENSBSLG00000016157)	TFAP4 (ENSBSLG00000016142)	srl (ENSBSLG00000016116)	ADCY9 (ENSBSLG00000016110)	CREBBP (ENSBSLG00000014890)	trap1 (ENSBSLG00000014585)	ENSBSLG00000014578	GDE1 (ENSBSLG00000014573)	GDE1 (ENSBSLG00000014555)	DNAAF5 (ENSBSLG00000014432)	prkar1b (ENSBSLG00000014313)	pdgfab (ENSBSLG00000014288)	ENSBSLG00000014169 #22	ENSBSLG00000014097 #22	ENSBSLG00000014061	ENSBSLG00000013657 #22	ENSBSLG00000013559	sun1b (ENSBSLG00000013399)	iqck (ENSBSLG00000013305)	gprc5ba (ENSBSLG00000013280)	proza (ENSBSLG00000013240)	GPR139 (ENSBSLG00000013216)	ENSBSLG00000013182	kdelr2a (ENSBSLG00000013132)	mfsd13al (ENSBSLG00000013076)	CDR2 (ENSBSLG00000013033)	SDR42E2 (ENSBSLG00000012399)	MOSMO (ENSBSLG00000012392)	uqcrc2a (ENSBSLG00000011949)	ENSBSLG00000011843	anks4b (ENSBSLG00000011822)
Siamese fighting fish	MODERN SPECIES	19	dnaja3a (ENSBSLG00000016350)	vasnb (ENSBSLG00000016347)	coro7 (ENSBSLG00000016182)	glis2b (ENSBSLG00000016157)	TFAP4 (ENSBSLG00000016142)	srl (ENSBSLG00000016116)	ADCY9 (ENSBSLG00000016110)	CREBBP (ENSBSLG00000014890)	trap1 (ENSBSLG00000014585)	ENSBSLG00000014578	GDE1 (ENSBSLG00000014573)	GDE1 (ENSBSLG00000014555)	DNAAF5 (ENSBSLG00000014432)	prkar1b (ENSBSLG00000014313)	pdgfab (ENSBSLG00000014288)	ENSBSLG00000014169 #22	ENSBSLG00000014097 #22	ENSBSLG00000014061	ENSBSLG00000013657 #22	ENSBSLG00000013559	sun1b (ENSBSLG00000013399)	iqck (ENSBSLG00000013305)	gprc5ba (ENSBSLG00000013280)	proza (ENSBSLG00000013240)	GPR139 (ENSBSLG00000013216)	ENSBSLG00000013182	kdelr2a (ENSBSLG00000013132)	mfsd13al (ENSBSLG00000013076)	CDR2 (ENSBSLG00000013033)	SDR42E2 (ENSBSLG00000012399)	MOSMO (ENSBSLG00000012392)
Climbing perch	MODERN SPECIES	21	ENSATEG00000027636	ENSATEG00000024296	coro7 (ENSATEG00000024299)	vasnb (ENSATEG00000024303)	glis2b (ENSATEG00000024306)	TFAP4 (ENSATEG00000024312)	srl (ENSATEG00000026141)	ADCY9 (ENSATEG00000024319)	CREBBP (ENSATEG00000024323)	TRAP1 (ENSATEG00000024326)	ENSATEG00000029266	ENSATEG00000024331	DNAAF5 (ENSATEG00000024334)	ENSATEG00000024338	PDGFA (ENSATEG00000024341)	ENSATEG00000024350 #22	ENSATEG00000024373	ENSATEG00000024379	iqck (ENSATEG00000026719)	ENSATEG00000024387	proza (ENSATEG00000024389)	ENSATEG00000024391	ENSATEG00000027141	ENSATEG00000024394	mfsd13al (ENSATEG00000024396)	ENSATEG00000024399	ENSATEG00000024403	ENSATEG00000024409	ENSATEG00000024412	ENSATEG00000024416	anks4b (ENSATEG00000024418)
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319
Eupecaria_B	DUPLICATION
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.k #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319
Perciformes	ANCESTRAL SPECIES	1	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.k #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.k #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT01100000264132	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319
Stickleback	DUPLICATION
Stickleback	MODERN SPECIES	10	pam16 (ENSGACG00000011315)	glis2b (ENSGACG00000011323)	TFAP4 (ENSGACG00000011329)	srl (ENSGACG00000011332)	ADCY9 (ENSGACG00000011339)	CREBBP (ENSGACG00000011341)	trap1 (ENSGACG00000011350)	MCRIP2 (ENSGACG00000011359)	GDE1 (ENSGACG00000011364)	ENSGACG00000011368	prkar1b (ENSGACG00000011370)	pdgfab (ENSGACG00000011408)	ENSGACG00000011412 #22	ENSGACG00000011417	ENSGACG00000011420	ENSGACG00000011425 #22	ENSGACG00000011428	ENSGACG00000011429	sun1b (ENSGACG00000011433)	gprc5ba (ENSGACG00000011440)	proza (ENSGACG00000011445)	GPR139 (ENSGACG00000011500)	kdelr2a (ENSGACG00000011503)	ENSGACG00000011520	mfsd13al (ENSGACG00000011523)	CDR2 (ENSGACG00000011526)	SDR42E2 (ENSGACG00000011530)	MOSMO (ENSGACG00000011537)	uqcrc2a (ENSGACG00000011541)	ENSGACG00000011550	ENSGACG00000011563
Stickleback	MODERN SPECIES	10	dnaja3a (ENSGACG00000011295)	coro7 (ENSGACG00000011303)	vasnb (ENSGACG00000011313)	pam16 (ENSGACG00000011315)	glis2b (ENSGACG00000011323)	TFAP4 (ENSGACG00000011329)	srl (ENSGACG00000011332)	ADCY9 (ENSGACG00000011339)	CREBBP (ENSGACG00000011341)	trap1 (ENSGACG00000011350)	MCRIP2 (ENSGACG00000011359)	GDE1 (ENSGACG00000011364)	ENSGACG00000011368	prkar1b (ENSGACG00000011370)	pdgfab (ENSGACG00000011408)	ENSGACG00000011412 #22	ENSGACG00000011417	ENSGACG00000011420	ENSGACG00000011425 #22	ENSGACG00000011428	ENSGACG00000011429	sun1b (ENSGACG00000011433)	gprc5ba (ENSGACG00000011440)	proza (ENSGACG00000011445)	GPR139 (ENSGACG00000011500)	kdelr2a (ENSGACG00000011503)	ENSGACG00000011520	mfsd13al (ENSGACG00000011523)	CDR2 (ENSGACG00000011526)	SDR42E2 (ENSGACG00000011530)	MOSMO (ENSGACG00000011537)
Lumpfish	MODERN SPECIES	23	dnaja3a (ENSCLMG00005005164)	coro7 (ENSCLMG00005005228)	ENSCLMG00005008843	vasnb (ENSCLMG00005008846)	glis2b (ENSCLMG00005008847)	TFAP4 (ENSCLMG00005008848)	srl (ENSCLMG00005008851)	ADCY9 (ENSCLMG00005008852)	CREBBP (ENSCLMG00005008886)	trap1 (ENSCLMG00005012462)	ENSCLMG00005012900	ENSCLMG00005012901	DNAAF5 (ENSCLMG00005012903)	prkar1b (ENSCLMG00005012904)	pdgfab (ENSCLMG00005012924)	ENSCLMG00005012925 #22	ENSCLMG00005012926	ENSCLMG00005012927	sun1b (ENSCLMG00005012928)	iqck (ENSCLMG00005012929)	gprc5ba (ENSCLMG00005012930)	proza (ENSCLMG00005012931)	GPR139 (ENSCLMG00005012932)	ENSCLMG00005012934	kdelr2a (ENSCLMG00005012935)	ENSCLMG00005012936	mfsd13al (ENSCLMG00005012937)	CDR2 (ENSCLMG00005012938)	SDR42E2 (ENSCLMG00005012940)	MOSMO (ENSCLMG00005012941)	uqcrc2a (ENSCLMG00005012962)
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00390000017673.a.b	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.k #22	ENSGT00390000004090	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319
Channel bull blenny	MODERN SPECIES	22	HMOX2 (ENSCGOG00000015196)	dnaja3a (ENSCGOG00000015201)	coro7 (ENSCGOG00000015306)	vasnb (ENSCGOG00000015479)	glis2b (ENSCGOG00000015480)	TFAP4 (ENSCGOG00000015483)	srl (ENSCGOG00000015491)	ADCY9 (ENSCGOG00000015500)	CREBBP (ENSCGOG00000015537)	trap1 (ENSCGOG00000017045)	ENSCGOG00000017081	GDE1 (ENSCGOG00000017082)	DNAAF5 (ENSCGOG00000017085)	prkar1b (ENSCGOG00000017110)	pdgfab (ENSCGOG00000000455)	ENSCGOG00000000496 #22	ENSCGOG00000000525	ENSCGOG00000000537	sun1b (ENSCGOG00000000551)	iqck (ENSCGOG00000000582)	gprc5ba (ENSCGOG00000000583)	proza (ENSCGOG00000000588)	GPR139 (ENSCGOG00000000593)	ENSCGOG00000000596	KDELR2 (ENSCGOG00000000602)	mfsd13al (ENSCGOG00000000607)	ENSCGOG00000000613	CDR2 (ENSCGOG00000000614)	SDR42E2 (ENSCGOG00000000620)	MOSMO (ENSCGOG00000000623)	uqcrc2a (ENSCGOG00000000731)
Pike perch	MODERN SPECIES	27	HMOX2 (ENSSLUG00000019294)	dnaja3a (ENSSLUG00000019308)	coro7 (ENSSLUG00000019447)	vasnb (ENSSLUG00000001394)	glis2b (ENSSLUG00000001405)	TFAP4 (ENSSLUG00000001445)	srl (ENSSLUG00000001462)	ADCY9 (ENSSLUG00000001492)	CREBBP (ENSSLUG00000002061)	trap1 (ENSSLUG00000005764)	ENSSLUG00000006648	GDE1 (ENSSLUG00000006654)	DNAAF5 (ENSSLUG00000006683)	prkar1b (ENSSLUG00000006775)	pdgfab (ENSSLUG00000006869)	ENSSLUG00000006891 #22	ENSSLUG00000006947	ENSSLUG00000006969	sun1b (ENSSLUG00000006988)	iqck (ENSSLUG00000007043)	gprc5ba (ENSSLUG00000007050)	proza (ENSSLUG00000007061)	GPR139 (ENSSLUG00000007068)	ENSSLUG00000007077	kdelr2a (ENSSLUG00000007088)	mfsd13al (ENSSLUG00000007096)	CDR2 (ENSSLUG00000007111)	SDR42E2 (ENSSLUG00000007129)	MOSMO (ENSSLUG00000007174)	uqcrc2a (ENSSLUG00000007322)	ENSSLUG00000010015
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.k #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319	ENSGT00390000017548.a
Gilthead seabream	MODERN SPECIES	15	vasnb (ENSSAUG00010024396)	coro7 (ENSSAUG00010024337)	glis2b (ENSSAUG00010024332)	TFAP4 (ENSSAUG00010024330)	srl (ENSSAUG00010024324)	ADCY9 (ENSSAUG00010024323)	CREBBP (ENSSAUG00010023313)	trap1 (ENSSAUG00010023217)	ENSSAUG00010023214	GDE1 (ENSSAUG00010023213)	DNAAF5 (ENSSAUG00010023196)	prkar1b (ENSSAUG00010023170)	pdgfab (ENSSAUG00010023169)	ENSSAUG00010023167	ENSSAUG00010023165	ENSSAUG00010023158 #22	ENSSAUG00010023155 #22	ENSSAUG00010023154	sun1b (ENSSAUG00010023152)	gprc5ba (ENSSAUG00010023151)	proza (ENSSAUG00010023150)	GPR139 (ENSSAUG00010023149)	ENSSAUG00010023146	kdelr2a (ENSSAUG00010023145)	mfsd13al (ENSSAUG00010023142)	CDR2 (ENSSAUG00010023141)	SDR42E2 (ENSSAUG00010023140)	MOSMO (ENSSAUG00010023139)	uqcrc2a (ENSSAUG00010022860)	ENSSAUG00010022858	anks4b (ENSSAUG00010022856)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	29	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.k #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319	ENSGT00390000017548.a
European seabass	DUPLICATION
European seabass	MODERN SPECIES	21	DNAJA3 (ENSDLAG00005014373)	vasnb (ENSDLAG00005032185)	pam16 (ENSDLAG00005014021)	glis2b (ENSDLAG00005031206)	TFAP4 (ENSDLAG00005028340)	srl (ENSDLAG00005013956)	ADCY9 (ENSDLAG00005013943)	ENSDLAG00005011125	TRAP1 (ENSDLAG00005009490)	ENSDLAG00005032493	DNAAF5 (ENSDLAG00005009249)	ENSDLAG00005028515	PDGFA (ENSDLAG00005015316)	ENSDLAG00005029753 #22	ENSDLAG00005028100 #22	ENSDLAG00005030397 #22	ENSDLAG00005027736	ENSDLAG00005015302	ENSDLAG00005015296	ENSDLAG00005015231	iqck (ENSDLAG00005026739)	ENSDLAG00005031097	proza (ENSDLAG00005015192)	ENSDLAG00005015189	ENSDLAG00005030278	ENSDLAG00005016329	mfsd13al (ENSDLAG00005014994)	ENSDLAG00005014986	ENSDLAG00005014980	ENSDLAG00005034584	uqcrc2a (ENSDLAG00005014897)
European seabass	MODERN SPECIES	21	ENSDLAG00005014701	DNAJA3 (ENSDLAG00005014373)	vasnb (ENSDLAG00005032185)	pam16 (ENSDLAG00005014021)	glis2b (ENSDLAG00005031206)	TFAP4 (ENSDLAG00005028340)	srl (ENSDLAG00005013956)	ADCY9 (ENSDLAG00005013943)	ENSDLAG00005011125	TRAP1 (ENSDLAG00005009490)	ENSDLAG00005032493	DNAAF5 (ENSDLAG00005009249)	ENSDLAG00005028515	PDGFA (ENSDLAG00005015316)	ENSDLAG00005029753 #22	ENSDLAG00005028100 #22	ENSDLAG00005030397 #22	ENSDLAG00005027736	ENSDLAG00005015302	ENSDLAG00005015296	ENSDLAG00005015231	iqck (ENSDLAG00005026739)	ENSDLAG00005031097	proza (ENSDLAG00005015192)	ENSDLAG00005015189	ENSDLAG00005030278	ENSDLAG00005016329	mfsd13al (ENSDLAG00005014994)	ENSDLAG00005014986	ENSDLAG00005014980	ENSDLAG00005034584
Large yellow croaker	MODERN SPECIES	483	dnaja3a (ENSLCRG00005007938)	vasnb (ENSLCRG00005007936)	ENSLCRG00005007935	coro7 (ENSLCRG00005007447)	glis2b (ENSLCRG00005007410)	TFAP4 (ENSLCRG00005007403)	srl (ENSLCRG00005007391)	ADCY9 (ENSLCRG00005007386)	CREBBP (ENSLCRG00005005163)	trap1 (ENSLCRG00005003221)	MCRIP2 (ENSLCRG00005003200)	GDE1 (ENSLCRG00005003132)	DNAAF5 (ENSLCRG00005003056)	prkar1b (ENSLCRG00005002913)	pdgfab (ENSLCRG00005002899)	ENSLCRG00005002840 #22	sun1b (ENSLCRG00005002754)	iqck (ENSLCRG00005002732)	gprc5ba (ENSLCRG00005002724)	proza (ENSLCRG00005002717)	GPR139 (ENSLCRG00005002713)	ENSLCRG00005002705	kdelr2a (ENSLCRG00005002697)	mfsd13al (ENSLCRG00005015530)	ENSLCRG00005015529	SDR42E2 (ENSLCRG00005015527)	MOSMO (ENSLCRG00005015526)	uqcrc2a (ENSLCRG00005014945)	ENSLCRG00005014940	anks4b (ENSLCRG00005014939)	ENSLCRG00005014937
Eupecaria_B	ANCESTRAL SPECIES																	ENSGT00390000007091.l #22
Eupecaria_C	ANCESTRAL SPECIES																	ENSGT00390000007091.l #22
Eupercaria_incertae_sedis	ANCESTRAL SPECIES																	ENSGT00390000007091.l #22
European seabass	MODERN SPECIES	21	ENSDLAG00005014715	ENSDLAG00005014701	DNAJA3 (ENSDLAG00005014373)	vasnb (ENSDLAG00005032185)	pam16 (ENSDLAG00005014021)	glis2b (ENSDLAG00005031206)	TFAP4 (ENSDLAG00005028340)	srl (ENSDLAG00005013956)	ADCY9 (ENSDLAG00005013943)	ENSDLAG00005011125	TRAP1 (ENSDLAG00005009490)	ENSDLAG00005032493	DNAAF5 (ENSDLAG00005009249)	ENSDLAG00005028515	PDGFA (ENSDLAG00005015316)	ENSDLAG00005029753 #22	ENSDLAG00005028100 #22	ENSDLAG00005030397 #22	ENSDLAG00005027736	ENSDLAG00005015302	ENSDLAG00005015296	ENSDLAG00005015231	iqck (ENSDLAG00005026739)	ENSDLAG00005031097	proza (ENSDLAG00005015192)	ENSDLAG00005015189	ENSDLAG00005030278	ENSDLAG00005016329	mfsd13al (ENSDLAG00005014994)	ENSDLAG00005014986	ENSDLAG00005014980
Gilthead seabream	MODERN SPECIES	15	ENSSAUG00010022855	anks4b (ENSSAUG00010022856)	ENSSAUG00010022858	uqcrc2a (ENSSAUG00010022860)	MOSMO (ENSSAUG00010023139)	SDR42E2 (ENSSAUG00010023140)	CDR2 (ENSSAUG00010023141)	mfsd13al (ENSSAUG00010023142)	kdelr2a (ENSSAUG00010023145)	ENSSAUG00010023146	GPR139 (ENSSAUG00010023149)	proza (ENSSAUG00010023150)	gprc5ba (ENSSAUG00010023151)	sun1b (ENSSAUG00010023152)	ENSSAUG00010023154	ENSSAUG00010023155 #22	ENSSAUG00010023158 #22	ENSSAUG00010023165	ENSSAUG00010023167	pdgfab (ENSSAUG00010023169)	prkar1b (ENSSAUG00010023170)	DNAAF5 (ENSSAUG00010023196)	GDE1 (ENSSAUG00010023213)	ENSSAUG00010023214	trap1 (ENSSAUG00010023217)	CREBBP (ENSSAUG00010023313)	ADCY9 (ENSSAUG00010024323)	srl (ENSSAUG00010024324)	TFAP4 (ENSSAUG00010024330)	glis2b (ENSSAUG00010024332)	coro7 (ENSSAUG00010024337)
Ballan wrasse	DUPLICATION
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	2516																ENSLBEG00000012660 #22
Ballan wrasse	MODERN SPECIES	1141																ENSLBEG00000025738 #22
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	9	dnaja3a (ENSLBEG00000026475)	coro7 (ENSLBEG00000026540)	vasnb (ENSLBEG00000026575)	pam16 (ENSLBEG00000026583)	glis2b (ENSLBEG00000026592)	TFAP4 (ENSLBEG00000026612)	srl (ENSLBEG00000026643)	ADCY9 (ENSLBEG00000026668)	CREBBP (ENSLBEG00000026717)	trap1 (ENSLBEG00000026827)	MCRIP2 (ENSLBEG00000026979)	GDE1 (ENSLBEG00000026990)	DNAAF5 (ENSLBEG00000027004)	prkar1b (ENSLBEG00000027034)	pdgfab (ENSLBEG00000027063)	ENSLBEG00000027088 #22	sfrp1a (ENSLBEG00000027112)	GOLGA7 (ENSLBEG00000027132)	loxl2b (ENSLBEG00000027152)	cyb561a3a (ENSLBEG00000027165)	hdr (ENSLBEG00000027177)	UNC5D (ENSLBEG00000027217)	ENSLBEG00000027288	ENSLBEG00000027318	tm2d2 (ENSLBEG00000027358)	ENSLBEG00000027392	lman2lb (ENSLBEG00000027421)	ENSLBEG00000027435	ENSLBEG00000027445	ENSLBEG00000000217	nsmfb (ENSLBEG00000000235)
Ballan wrasse	MODERN SPECIES	1293																ENSLBEG00000023729 #22
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251
Atherinomorphae	ANCESTRAL SPECIES	6	ENSGT00390000017673.a.b	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00390000017673.a.b	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319
Cyprinodontoidei	DUPLICATION
Cyprinodontoidei	DUPLICATION
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00390000007091.o.a #22
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.o.b.a #22	ENSGT00390000007091.o.a #22	ENSGT00390000007091.p.a #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00730000111039.C.h	ENSGT00940000159473	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266
Poecilia	ANCESTRAL SPECIES	8	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.o.b.a.b #22	ENSGT00390000007091.o.a #22	ENSGT00390000007091.p.a #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00730000111039.C.h	ENSGT00940000159473	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266
NAME_6	ANCESTRAL SPECIES																	ENSGT00390000007091.o.a #22
Amazon molly	MODERN SPECIES	567																ENSPFOG00000006079 #22	ENSPFOG00000006129 #22	ENSPFOG00000006073 #22	cox5aa (ENSPFOG00000024324)	ENSPFOG00000022794	ENSPFOG00000024589	ENSPFOG00000006067	ENSPFOG00000022643	ENSPFOG00000019904	ENSPFOG00000006063	robo2 (ENSPFOG00000004552)	ROBO1 (ENSPFOG00000002992)
Guppy	MODERN SPECIES	460	mettl2a (ENSPREG00000008064)	itgb3a (ENSPREG00000008006)	rprml (ENSPREG00000007992)	CORO7 (ENSPREG00000007934)	pam16 (ENSPREG00000007886)	glis2b (ENSPREG00000007859)	TFAP4 (ENSPREG00000007833)	srl (ENSPREG00000007751)	ADCY9 (ENSPREG00000007721)	CREBBP (ENSPREG00000007625)	trap1 (ENSPREG00000007562)	DNAAF5 (ENSPREG00000007476)	prkar1b (ENSPREG00000007402)	pdgfab (ENSPREG00000007381)	ENSPREG00000007347 #22	ENSPREG00000007327 #22	ENSPREG00000007304 #22	ENSPREG00000007283	ENSPREG00000007277	sun1b (ENSPREG00000007121)	ENSPREG00000007090	gprc5ba (ENSPREG00000007071)	proza (ENSPREG00000007046)	ENSPREG00000007034	GPR139 (ENSPREG00000007029)	ENSPREG00000007016	ENSPREG00000007005	kdelr2a (ENSPREG00000006988)	mfsd13al (ENSPREG00000006965)	ENSPREG00000006855	MOSMO (ENSPREG00000006821)
Platyfish	MODERN SPECIES	7	dnaja3a (ENSXMAG00000004671)	coro7 (ENSXMAG00000004649)	vasnb (ENSXMAG00000019996)	pam16 (ENSXMAG00000029352)	glis2b (ENSXMAG00000004642)	TFAP4 (ENSXMAG00000027478)	srl (ENSXMAG00000004625)	ADCY9 (ENSXMAG00000028331)	CREBBP (ENSXMAG00000004557)	trap1 (ENSXMAG00000004520)	ENSXMAG00000025062	DNAAF5 (ENSXMAG00000004507)	prkar1b (ENSXMAG00000027445)	pdgfab (ENSXMAG00000004457)	ENSXMAG00000004453 #22	ENSXMAG00000004451 #22	ENSXMAG00000025870 #22	ENSXMAG00000023393	sun1b (ENSXMAG00000000898)	ENSXMAG00000028880	gprc5ba (ENSXMAG00000000919)	proza (ENSXMAG00000000925)	ENSXMAG00000000934	GPR139 (ENSXMAG00000000935)	ENSXMAG00000000937	ENSXMAG00000022551	kdelr2a (ENSXMAG00000023067)	mfsd13al (ENSXMAG00000029275)	CDR2 (ENSXMAG00000000971)	SDR42E2 (ENSXMAG00000000979)	MOSMO (ENSXMAG00000020995)
NAME_4	ANCESTRAL SPECIES																	ENSGT00390000007091.o.a #22
Sheepshead minnow	MODERN SPECIES	640																ENSCVAG00000004127 #22	pdgfab (ENSCVAG00000004106)	prkar1b (ENSCVAG00000004092)	ENSCVAG00000004067	ENSCVAG00000004052	trap1 (ENSCVAG00000004023)	CREBBP (ENSCVAG00000003970)	ADCY9 (ENSCVAG00000003552)	srl (ENSCVAG00000003513)	TFAP4 (ENSCVAG00000003490)	glis2b (ENSCVAG00000003469)	pam16 (ENSCVAG00000003464)	CORO7 (ENSCVAG00000003459)
Cyprinodontoidei	ANCESTRAL SPECIES	18	ENSGT00390000017673.a.b	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.o.b #22	ENSGT00390000007091.p #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251
Poeciliinae	DUPLICATION
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00390000017673.a.b	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.o.b.a #22	ENSGT00390000007091.o.a #22	ENSGT00390000007091.p.a #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00730000111039.C.h	ENSGT00940000159473	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393
Poecilia	DUPLICATION
Poecilia	ANCESTRAL SPECIES																	ENSGT00390000007091.o.b.a.a #22
Guppy	MODERN SPECIES	77																ENSPREG00000009634 #22
NAME_6	ANCESTRAL SPECIES																	ENSGT00390000007091.o.b.a.a #22
Amazon molly	MODERN SPECIES	567															ENSPFOG00000006079 #22	ENSPFOG00000006129 #22	ENSPFOG00000006073 #22	cox5aa (ENSPFOG00000024324)	ENSPFOG00000022794	ENSPFOG00000024589	ENSPFOG00000006067	ENSPFOG00000022643	ENSPFOG00000019904	ENSPFOG00000006063	robo2 (ENSPFOG00000004552)	ROBO1 (ENSPFOG00000002992)
Poecilia	ANCESTRAL SPECIES	8	ENSGT00390000017673.a.b	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.o.b.a.b #22	ENSGT00390000007091.o.a #22	ENSGT00390000007091.p.a #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00730000111039.C.h	ENSGT00940000159473	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393
Guppy	MODERN SPECIES	460	tlk2 (ENSPREG00000008115)	mettl2a (ENSPREG00000008064)	itgb3a (ENSPREG00000008006)	rprml (ENSPREG00000007992)	CORO7 (ENSPREG00000007934)	pam16 (ENSPREG00000007886)	glis2b (ENSPREG00000007859)	TFAP4 (ENSPREG00000007833)	srl (ENSPREG00000007751)	ADCY9 (ENSPREG00000007721)	CREBBP (ENSPREG00000007625)	trap1 (ENSPREG00000007562)	DNAAF5 (ENSPREG00000007476)	prkar1b (ENSPREG00000007402)	pdgfab (ENSPREG00000007381)	ENSPREG00000007347 #22	ENSPREG00000007327 #22	ENSPREG00000007304 #22	ENSPREG00000007283	ENSPREG00000007277	sun1b (ENSPREG00000007121)	ENSPREG00000007090	gprc5ba (ENSPREG00000007071)	proza (ENSPREG00000007046)	ENSPREG00000007034	GPR139 (ENSPREG00000007029)	ENSPREG00000007016	ENSPREG00000007005	kdelr2a (ENSPREG00000006988)	mfsd13al (ENSPREG00000006965)	ENSPREG00000006855
Platyfish	MODERN SPECIES	7	HMOX2 (ENSXMAG00000004688)	dnaja3a (ENSXMAG00000004671)	coro7 (ENSXMAG00000004649)	vasnb (ENSXMAG00000019996)	pam16 (ENSXMAG00000029352)	glis2b (ENSXMAG00000004642)	TFAP4 (ENSXMAG00000027478)	srl (ENSXMAG00000004625)	ADCY9 (ENSXMAG00000028331)	CREBBP (ENSXMAG00000004557)	trap1 (ENSXMAG00000004520)	ENSXMAG00000025062	DNAAF5 (ENSXMAG00000004507)	prkar1b (ENSXMAG00000027445)	pdgfab (ENSXMAG00000004457)	ENSXMAG00000004453 #22	ENSXMAG00000004451 #22	ENSXMAG00000025870 #22	ENSXMAG00000023393	sun1b (ENSXMAG00000000898)	ENSXMAG00000028880	gprc5ba (ENSXMAG00000000919)	proza (ENSXMAG00000000925)	ENSXMAG00000000934	GPR139 (ENSXMAG00000000935)	ENSXMAG00000000937	ENSXMAG00000022551	kdelr2a (ENSXMAG00000023067)	mfsd13al (ENSXMAG00000029275)	CDR2 (ENSXMAG00000000971)	SDR42E2 (ENSXMAG00000000979)
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00390000007091.o.b.b #22
Poecilia	ANCESTRAL SPECIES																	ENSGT00390000007091.o.b.b #22
NAME_6	ANCESTRAL SPECIES	8	ENSGT00390000017673.a.b	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.o.b.b #22
Amazon molly	MODERN SPECIES	329	ABCA3 (ENSPFOG00000010081)	ccnf (ENSPFOG00000010666)	HMOX2 (ENSPFOG00000010764)	dnaja3a (ENSPFOG00000010811)	coro7 (ENSPFOG00000010909)	vasnb (ENSPFOG00000020711)	glis2b (ENSPFOG00000011330)	TFAP4 (ENSPFOG00000011355)	srl (ENSPFOG00000011408)	ADCY9 (ENSPFOG00000011468)	CREBBP (ENSPFOG00000011580)	ENSPFOG00000011919	DNAAF5 (ENSPFOG00000011946)	prkar1b (ENSPFOG00000012195)	pdgfab (ENSPFOG00000012349)	ENSPFOG00000012389 #22
Cyprinodontoidei	ANCESTRAL SPECIES	18	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.o.b #22	ENSGT00390000007091.p #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319
Poeciliinae	DUPLICATION
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.o.b.a #22	ENSGT00390000007091.o.a #22	ENSGT00390000007091.p.a #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00730000111039.C.h	ENSGT00940000159473	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251
Poecilia	ANCESTRAL SPECIES	8	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.o.b.a.b #22	ENSGT00390000007091.o.a #22	ENSGT00390000007091.p.a #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00730000111039.C.h	ENSGT00940000159473	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251
NAME_6	ANCESTRAL SPECIES	56																ENSGT00390000007091.p.a #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319
Amazon molly	MODERN SPECIES	339																ENSPFOG00000003176 #22	ENSPFOG00000003342	ENSPFOG00000022321	sun1b (ENSPFOG00000003382)	ENSPFOG00000023104	gprc5ba (ENSPFOG00000003533)	proza (ENSPFOG00000003586)	ENSPFOG00000024402	GPR139 (ENSPFOG00000022471)	GPR139 (ENSPFOG00000019920)	ENSPFOG00000024471	ENSPFOG00000003679	kdelr2a (ENSPFOG00000003713)	mfsd13al (ENSPFOG00000003765)	ENSPFOG00000003897	SDR42E2 (ENSPFOG00000003986)
Guppy	MODERN SPECIES	460	itgb3a (ENSPREG00000008006)	rprml (ENSPREG00000007992)	CORO7 (ENSPREG00000007934)	pam16 (ENSPREG00000007886)	glis2b (ENSPREG00000007859)	TFAP4 (ENSPREG00000007833)	srl (ENSPREG00000007751)	ADCY9 (ENSPREG00000007721)	CREBBP (ENSPREG00000007625)	trap1 (ENSPREG00000007562)	DNAAF5 (ENSPREG00000007476)	prkar1b (ENSPREG00000007402)	pdgfab (ENSPREG00000007381)	ENSPREG00000007347 #22	ENSPREG00000007327 #22	ENSPREG00000007304 #22	ENSPREG00000007283	ENSPREG00000007277	sun1b (ENSPREG00000007121)	ENSPREG00000007090	gprc5ba (ENSPREG00000007071)	proza (ENSPREG00000007046)	ENSPREG00000007034	GPR139 (ENSPREG00000007029)	ENSPREG00000007016	ENSPREG00000007005	kdelr2a (ENSPREG00000006988)	mfsd13al (ENSPREG00000006965)	ENSPREG00000006855	MOSMO (ENSPREG00000006821)	uqcrc2a (ENSPREG00000006714)
Platyfish	MODERN SPECIES	7	coro7 (ENSXMAG00000004649)	vasnb (ENSXMAG00000019996)	pam16 (ENSXMAG00000029352)	glis2b (ENSXMAG00000004642)	TFAP4 (ENSXMAG00000027478)	srl (ENSXMAG00000004625)	ADCY9 (ENSXMAG00000028331)	CREBBP (ENSXMAG00000004557)	trap1 (ENSXMAG00000004520)	ENSXMAG00000025062	DNAAF5 (ENSXMAG00000004507)	prkar1b (ENSXMAG00000027445)	pdgfab (ENSXMAG00000004457)	ENSXMAG00000004453 #22	ENSXMAG00000004451 #22	ENSXMAG00000025870 #22	ENSXMAG00000023393	sun1b (ENSXMAG00000000898)	ENSXMAG00000028880	gprc5ba (ENSXMAG00000000919)	proza (ENSXMAG00000000925)	ENSXMAG00000000934	GPR139 (ENSXMAG00000000935)	ENSXMAG00000000937	ENSXMAG00000022551	kdelr2a (ENSXMAG00000023067)	mfsd13al (ENSXMAG00000029275)	CDR2 (ENSXMAG00000000971)	SDR42E2 (ENSXMAG00000000979)	MOSMO (ENSXMAG00000020995)	uqcrc2a (ENSXMAG00000000996)
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00390000007091.p.b #22
Poecilia	ANCESTRAL SPECIES																	ENSGT00390000007091.p.b #22
NAME_6	ANCESTRAL SPECIES																	ENSGT00390000007091.p.b #22
Amazon molly	MODERN SPECIES	567														ENSPFOG00000006079 #22	ENSPFOG00000006129 #22	ENSPFOG00000006073 #22	cox5aa (ENSPFOG00000024324)	ENSPFOG00000022794	ENSPFOG00000024589	ENSPFOG00000006067	ENSPFOG00000022643	ENSPFOG00000019904	ENSPFOG00000006063	robo2 (ENSPFOG00000004552)	ROBO1 (ENSPFOG00000002992)
Sailfin molly	MODERN SPECIES	1293																ENSPLAG00000016480 #22	ENSPLAG00000016468	ENSPLAG00000016450	sun1b (ENSPLAG00000016432)	gprc5ba (ENSPLAG00000016402)	proza (ENSPLAG00000016393)	ENSPLAG00000016383
NAME_4	ANCESTRAL SPECIES	186																ENSGT00390000007091.p #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00390000007907	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319
Mummichog	MODERN SPECIES	293																ENSFHEG00000013783 #22	ENSFHEG00000013793	sun1b (ENSFHEG00000013817)	ENSFHEG00000013832	gprc5ba (ENSFHEG00000013839)	proza (ENSFHEG00000013852)	GPR139 (ENSFHEG00000013875)	ENSFHEG00000014198	ENSFHEG00000014211	KDELR2 (ENSFHEG00000014221)	mfsd13al (ENSFHEG00000014239)	CDR2 (ENSFHEG00000014245)	SDR42E2 (ENSFHEG00000014268)	MOSMO (ENSFHEG00000014276)	uqcrc2a (ENSFHEG00000014291)	ENSFHEG00000000345
Sheepshead minnow	MODERN SPECIES	1873																ENSCVAG00000009020 #22
Aplocheiloidei	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Mangrove rivulus	MODERN SPECIES	1307																ENSKMAG00000011351 #22
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000155280.f	ENSGT00940000156606	ENSGT00940000159318.n.a	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000177735	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319
Cichlidae	ANCESTRAL SPECIES	16	ENSGT00940000155280.f	ENSGT00940000156606	ENSGT00940000159318.n.a	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091 #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319	ENSGT00390000017548.a
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00390000007091.q.a #22
Nile tilapia	DUPLICATION
Nile tilapia	MODERN SPECIES	399					ENSONIG00000031875	ENSONIG00000030485	ENSONIG00000035038	ENSONIG00000031798	ENSONIG00000028782	ENSONIG00000028976	ENSONIG00000028004	ENSONIG00000042928	ENSONIG00000035210	ENSONIG00000032324	ENSONIG00000036991	ENSONIG00000012332 #22	ENSONIG00000001445
Nile tilapia	MODERN SPECIES	16	trap1 (ENSONIG00000005173)	ENSONIG00000005179	GDE1 (ENSONIG00000005169)	DNAAF5 (ENSONIG00000005166)	prkar1b (ENSONIG00000005159)	pdgfab (ENSONIG00000005157)	ENSONIG00000033398	ENSONIG00000005156 #22	ENSONIG00000015367 #22	ENSONIG00000040200	ENSONIG00000041499	ENSONIG00000036403 #22	ENSONIG00000042947 #22	ENSONIG00000029432	ENSONIG00000017112 #22	ENSONIG00000034762 #22	ENSONIG00000017113	sun1b (ENSONIG00000017115)	ENSONIG00000028194	iqck (ENSONIG00000041881)	gprc5b (ENSONIG00000017118)	proza (ENSONIG00000041508)	GPR139 (ENSONIG00000017124)	ENSONIG00000029582	kdelr2a (ENSONIG00000017126)	mfsd13al (ENSONIG00000017127)	ENSONIG00000017129	SDR42E2 (ENSONIG00000017131)	MOSMO (ENSONIG00000017134)	uqcrc2a (ENSONIG00000017135)	ENSONIG00000017140
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00390000007091.q.a #22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00390000007091.q.a #22
Haplochromini_A	DUPLICATION
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00390000007091.q.a.c #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00390000007091.q.a.c #22
Eastern happy	MODERN SPECIES	16	TFAP4 (ENSACLG00000027681)	srl (ENSACLG00000027685)	ADCY9 (ENSACLG00000027688)	CREBBP (ENSACLG00000027700)	trap1 (ENSACLG00000027723)	ENSACLG00000027726	GDE1 (ENSACLG00000027727)	DNAAF5 (ENSACLG00000027731)	prkar1b (ENSACLG00000027733)	pdgfab (ENSACLG00000027736)	ENSACLG00000027738	ENSACLG00000027740 #22	ENSACLG00000027743 #22	ENSACLG00000027749 #22	ENSACLG00000027759 #22	ENSACLG00000027763 #22	ENSACLG00000027770 #22	ENSACLG00000027778 #22	ENSACLG00000027781 #22	ENSACLG00000027785 #22	ENSACLG00000027802	sun1b (ENSACLG00000027807)	iqck (ENSACLG00000027821)	gprc5ba (ENSACLG00000027822)	proza (ENSACLG00000027825)	GPR139 (ENSACLG00000027831)	ENSACLG00000027832	kdelr2a (ENSACLG00000027835)	mfsd13al (ENSACLG00000027837)	ENSACLG00000027842	SDR42E2 (ENSACLG00000027845)
P. nyererei	MODERN SPECIES	881																ENSPNYG00000002532 #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00390000007091.q.a.d #22
Haplochromini_B	ANCESTRAL SPECIES	33	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.q.b.a.a.a.b #22	ENSGT00390000007091.q.a.d #22	ENSGT00390000007091.r.a.a #22	ENSGT00390000007091.r.a.b.c.b #22	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319
Eastern happy	MODERN SPECIES	16	pam16 (ENSACLG00000027678)	glis2b (ENSACLG00000027679)	TFAP4 (ENSACLG00000027681)	srl (ENSACLG00000027685)	ADCY9 (ENSACLG00000027688)	CREBBP (ENSACLG00000027700)	trap1 (ENSACLG00000027723)	ENSACLG00000027726	GDE1 (ENSACLG00000027727)	DNAAF5 (ENSACLG00000027731)	prkar1b (ENSACLG00000027733)	pdgfab (ENSACLG00000027736)	ENSACLG00000027738	ENSACLG00000027740 #22	ENSACLG00000027743 #22	ENSACLG00000027749 #22	ENSACLG00000027759 #22	ENSACLG00000027763 #22	ENSACLG00000027770 #22	ENSACLG00000027778 #22	ENSACLG00000027781 #22	ENSACLG00000027785 #22	ENSACLG00000027802	sun1b (ENSACLG00000027807)	iqck (ENSACLG00000027821)	gprc5ba (ENSACLG00000027822)	proza (ENSACLG00000027825)	GPR139 (ENSACLG00000027831)	ENSACLG00000027832	kdelr2a (ENSACLG00000027835)	mfsd13al (ENSACLG00000027837)
Zebra mbuna	MODERN SPECIES	82														ENSMZEG00005023374 #22	ENSMZEG00005023379	ENSMZEG00005023384 #22	ENSMZEG00005023431 #22	ENSMZEG00005023434 #22	ENSMZEG00005023437 #22
Burton s mouthbrooder	MODERN SPECIES	1725																ENSHBUG00000011388 #22
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.q.b.a.a.a #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319	ENSGT00390000017548.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	12	ENSGT00940000155280.f	ENSGT00940000156606	ENSGT00940000159318.n.a	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.q.b.a.a.a #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319	ENSGT00390000017548.a
Haplochromini	ANCESTRAL SPECIES	12	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.q.b.a.a.a #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319	ENSGT00390000017548.a
Haplochromini_A	ANCESTRAL SPECIES	14	ENSGT00940000155280.f	ENSGT00940000156606	ENSGT00940000159318.n.a	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.q.b.a.a.a #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319	ENSGT00390000017548.a
Haplochromini_B	DUPLICATION
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.a.a.a #22
Eastern happy	MODERN SPECIES	16	srl (ENSACLG00000027685)	ADCY9 (ENSACLG00000027688)	CREBBP (ENSACLG00000027700)	trap1 (ENSACLG00000027723)	ENSACLG00000027726	GDE1 (ENSACLG00000027727)	DNAAF5 (ENSACLG00000027731)	prkar1b (ENSACLG00000027733)	pdgfab (ENSACLG00000027736)	ENSACLG00000027738	ENSACLG00000027740 #22	ENSACLG00000027743 #22	ENSACLG00000027749 #22	ENSACLG00000027759 #22	ENSACLG00000027763 #22	ENSACLG00000027770 #22	ENSACLG00000027778 #22	ENSACLG00000027781 #22	ENSACLG00000027785 #22	ENSACLG00000027802	sun1b (ENSACLG00000027807)	iqck (ENSACLG00000027821)	gprc5ba (ENSACLG00000027822)	proza (ENSACLG00000027825)	GPR139 (ENSACLG00000027831)	ENSACLG00000027832	kdelr2a (ENSACLG00000027835)	mfsd13al (ENSACLG00000027837)	ENSACLG00000027842	SDR42E2 (ENSACLG00000027845)	MOSMO (ENSACLG00000027858)
Zebra mbuna	MODERN SPECIES	82															ENSMZEG00005023437 #22	ENSMZEG00005023434 #22	ENSMZEG00005023431 #22	ENSMZEG00005023384 #22	ENSMZEG00005023379	ENSMZEG00005023374 #22
Haplochromini_B	ANCESTRAL SPECIES	33	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.q.b.a.a.a.b #22	ENSGT00390000007091.q.a.d #22	ENSGT00390000007091.r.a.a #22	ENSGT00390000007091.r.a.b.c.b #22	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251
Eastern happy	MODERN SPECIES	16	coro7 (ENSACLG00000027660)	vasnb (ENSACLG00000027675)	pam16 (ENSACLG00000027678)	glis2b (ENSACLG00000027679)	TFAP4 (ENSACLG00000027681)	srl (ENSACLG00000027685)	ADCY9 (ENSACLG00000027688)	CREBBP (ENSACLG00000027700)	trap1 (ENSACLG00000027723)	ENSACLG00000027726	GDE1 (ENSACLG00000027727)	DNAAF5 (ENSACLG00000027731)	prkar1b (ENSACLG00000027733)	pdgfab (ENSACLG00000027736)	ENSACLG00000027738	ENSACLG00000027740 #22	ENSACLG00000027743 #22	ENSACLG00000027749 #22	ENSACLG00000027759 #22	ENSACLG00000027763 #22	ENSACLG00000027770 #22	ENSACLG00000027778 #22	ENSACLG00000027781 #22	ENSACLG00000027785 #22	ENSACLG00000027802	sun1b (ENSACLG00000027807)	iqck (ENSACLG00000027821)	gprc5ba (ENSACLG00000027822)	proza (ENSACLG00000027825)	GPR139 (ENSACLG00000027831)	ENSACLG00000027832
Zebra mbuna	MODERN SPECIES	1107	dnaja3a (ENSMZEG00005004734)	vasnb (ENSMZEG00005004711)	coro7 (ENSMZEG00005004668)	pam16 (ENSMZEG00005004640)	glis2b (ENSMZEG00005004626)	TFAP4 (ENSMZEG00005004597)	srl (ENSMZEG00005004548)	ADCY9 (ENSMZEG00005004507)	CREBBP (ENSMZEG00005004405)	trap1 (ENSMZEG00005004353)	ENSMZEG00005004372	GDE1 (ENSMZEG00005004336)	DNAAF5 (ENSMZEG00005004317)	prkar1b (ENSMZEG00005004293)	pdgfab (ENSMZEG00005004261)	ENSMZEG00005004230 #22	ENSMZEG00005004202 #22	ENSMZEG00005004187	sun1b (ENSMZEG00005004086)	gprc5ba (ENSMZEG00005004049)	proza (ENSMZEG00005004019)	GPR139 (ENSMZEG00005004002)	ENSMZEG00005003974	kdelr2a (ENSMZEG00005003960)	mfsd13al (ENSMZEG00005003924)	ENSMZEG00005003913	SDR42E2 (ENSMZEG00005003838)	ENSMZEG00005003812	uqcrc2a (ENSMZEG00005003799)	ENSMZEG00005003785	anks4b (ENSMZEG00005003779)
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.a.b #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.a.b #22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.a.b #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.a.b #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.a.b #22
Eastern happy	MODERN SPECIES	16	vasnb (ENSACLG00000027675)	pam16 (ENSACLG00000027678)	glis2b (ENSACLG00000027679)	TFAP4 (ENSACLG00000027681)	srl (ENSACLG00000027685)	ADCY9 (ENSACLG00000027688)	CREBBP (ENSACLG00000027700)	trap1 (ENSACLG00000027723)	ENSACLG00000027726	GDE1 (ENSACLG00000027727)	DNAAF5 (ENSACLG00000027731)	prkar1b (ENSACLG00000027733)	pdgfab (ENSACLG00000027736)	ENSACLG00000027738	ENSACLG00000027740 #22	ENSACLG00000027743 #22	ENSACLG00000027749 #22	ENSACLG00000027759 #22	ENSACLG00000027763 #22	ENSACLG00000027770 #22	ENSACLG00000027778 #22	ENSACLG00000027781 #22	ENSACLG00000027785 #22	ENSACLG00000027802	sun1b (ENSACLG00000027807)	iqck (ENSACLG00000027821)	gprc5ba (ENSACLG00000027822)	proza (ENSACLG00000027825)	GPR139 (ENSACLG00000027831)	ENSACLG00000027832	kdelr2a (ENSACLG00000027835)
Zebra mbuna	MODERN SPECIES	82																ENSMZEG00005023374 #22	ENSMZEG00005023379	ENSMZEG00005023384 #22	ENSMZEG00005023431 #22	ENSMZEG00005023434 #22	ENSMZEG00005023437 #22
Nile tilapia	MODERN SPECIES	16	coro7 (ENSONIG00000005200)	pam16 (ENSONIG00000005198)	glis2b (ENSONIG00000005197)	TFAP4 (ENSONIG00000016338)	srl (ENSONIG00000005192)	ADCY9 (ENSONIG00000005189)	CREBBP (ENSONIG00000005180)	trap1 (ENSONIG00000005173)	ENSONIG00000005179	GDE1 (ENSONIG00000005169)	DNAAF5 (ENSONIG00000005166)	prkar1b (ENSONIG00000005159)	pdgfab (ENSONIG00000005157)	ENSONIG00000033398	ENSONIG00000005156 #22	ENSONIG00000015367 #22	ENSONIG00000040200	ENSONIG00000041499	ENSONIG00000036403 #22	ENSONIG00000042947 #22	ENSONIG00000029432	ENSONIG00000017112 #22	ENSONIG00000034762 #22	ENSONIG00000017113	sun1b (ENSONIG00000017115)	ENSONIG00000028194	iqck (ENSONIG00000041881)	gprc5b (ENSONIG00000017118)	proza (ENSONIG00000041508)	GPR139 (ENSONIG00000017124)	ENSONIG00000029582
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.b.a #22
Nile tilapia	MODERN SPECIES	16	TFAP4 (ENSONIG00000016338)	srl (ENSONIG00000005192)	ADCY9 (ENSONIG00000005189)	CREBBP (ENSONIG00000005180)	trap1 (ENSONIG00000005173)	ENSONIG00000005179	GDE1 (ENSONIG00000005169)	DNAAF5 (ENSONIG00000005166)	prkar1b (ENSONIG00000005159)	pdgfab (ENSONIG00000005157)	ENSONIG00000033398	ENSONIG00000005156 #22	ENSONIG00000015367 #22	ENSONIG00000040200	ENSONIG00000041499	ENSONIG00000036403 #22	ENSONIG00000042947 #22	ENSONIG00000029432	ENSONIG00000017112 #22	ENSONIG00000034762 #22	ENSONIG00000017113	sun1b (ENSONIG00000017115)	ENSONIG00000028194	iqck (ENSONIG00000041881)	gprc5b (ENSONIG00000017118)	proza (ENSONIG00000041508)	GPR139 (ENSONIG00000017124)	ENSONIG00000029582	kdelr2a (ENSONIG00000017126)	mfsd13al (ENSONIG00000017127)	ENSONIG00000017129
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.b.a #22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.b.a #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.b.a #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.b.a #22
Eastern happy	MODERN SPECIES	16	ADCY9 (ENSACLG00000027688)	CREBBP (ENSACLG00000027700)	trap1 (ENSACLG00000027723)	ENSACLG00000027726	GDE1 (ENSACLG00000027727)	DNAAF5 (ENSACLG00000027731)	prkar1b (ENSACLG00000027733)	pdgfab (ENSACLG00000027736)	ENSACLG00000027738	ENSACLG00000027740 #22	ENSACLG00000027743 #22	ENSACLG00000027749 #22	ENSACLG00000027759 #22	ENSACLG00000027763 #22	ENSACLG00000027770 #22	ENSACLG00000027778 #22	ENSACLG00000027781 #22	ENSACLG00000027785 #22	ENSACLG00000027802	sun1b (ENSACLG00000027807)	iqck (ENSACLG00000027821)	gprc5ba (ENSACLG00000027822)	proza (ENSACLG00000027825)	GPR139 (ENSACLG00000027831)	ENSACLG00000027832	kdelr2a (ENSACLG00000027835)	mfsd13al (ENSACLG00000027837)	ENSACLG00000027842	SDR42E2 (ENSACLG00000027845)	MOSMO (ENSACLG00000027858)	uqcrc2a (ENSACLG00000027864)
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.b.b #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.b.b #22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.b.b #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.b.b #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.a.b.b #22
Eastern happy	MODERN SPECIES	16	CREBBP (ENSACLG00000027700)	trap1 (ENSACLG00000027723)	ENSACLG00000027726	GDE1 (ENSACLG00000027727)	DNAAF5 (ENSACLG00000027731)	prkar1b (ENSACLG00000027733)	pdgfab (ENSACLG00000027736)	ENSACLG00000027738	ENSACLG00000027740 #22	ENSACLG00000027743 #22	ENSACLG00000027749 #22	ENSACLG00000027759 #22	ENSACLG00000027763 #22	ENSACLG00000027770 #22	ENSACLG00000027778 #22	ENSACLG00000027781 #22	ENSACLG00000027785 #22	ENSACLG00000027802	sun1b (ENSACLG00000027807)	iqck (ENSACLG00000027821)	gprc5ba (ENSACLG00000027822)	proza (ENSACLG00000027825)	GPR139 (ENSACLG00000027831)	ENSACLG00000027832	kdelr2a (ENSACLG00000027835)	mfsd13al (ENSACLG00000027837)	ENSACLG00000027842	SDR42E2 (ENSACLG00000027845)	MOSMO (ENSACLG00000027858)	uqcrc2a (ENSACLG00000027864)	ENSACLG00000027866
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00390000007091.q.b.b #22
Nile tilapia	MODERN SPECIES	16	srl (ENSONIG00000005192)	ADCY9 (ENSONIG00000005189)	CREBBP (ENSONIG00000005180)	trap1 (ENSONIG00000005173)	ENSONIG00000005179	GDE1 (ENSONIG00000005169)	DNAAF5 (ENSONIG00000005166)	prkar1b (ENSONIG00000005159)	pdgfab (ENSONIG00000005157)	ENSONIG00000033398	ENSONIG00000005156 #22	ENSONIG00000015367 #22	ENSONIG00000040200	ENSONIG00000041499	ENSONIG00000036403 #22	ENSONIG00000042947 #22	ENSONIG00000029432	ENSONIG00000017112 #22	ENSONIG00000034762 #22	ENSONIG00000017113	sun1b (ENSONIG00000017115)	ENSONIG00000028194	iqck (ENSONIG00000041881)	gprc5b (ENSONIG00000017118)	proza (ENSONIG00000041508)	GPR139 (ENSONIG00000017124)	ENSONIG00000029582	kdelr2a (ENSONIG00000017126)	mfsd13al (ENSONIG00000017127)	ENSONIG00000017129	SDR42E2 (ENSONIG00000017131)
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00390000007091.r.a.a #22
Nile tilapia	DUPLICATION
Nile tilapia	MODERN SPECIES	16	CREBBP (ENSONIG00000005180)	trap1 (ENSONIG00000005173)	ENSONIG00000005179	GDE1 (ENSONIG00000005169)	DNAAF5 (ENSONIG00000005166)	prkar1b (ENSONIG00000005159)	pdgfab (ENSONIG00000005157)	ENSONIG00000033398	ENSONIG00000005156 #22	ENSONIG00000015367 #22	ENSONIG00000040200	ENSONIG00000041499	ENSONIG00000036403 #22	ENSONIG00000042947 #22	ENSONIG00000029432	ENSONIG00000017112 #22	ENSONIG00000034762 #22	ENSONIG00000017113	sun1b (ENSONIG00000017115)	ENSONIG00000028194	iqck (ENSONIG00000041881)	gprc5b (ENSONIG00000017118)	proza (ENSONIG00000041508)	GPR139 (ENSONIG00000017124)	ENSONIG00000029582	kdelr2a (ENSONIG00000017126)	mfsd13al (ENSONIG00000017127)	ENSONIG00000017129	SDR42E2 (ENSONIG00000017131)	MOSMO (ENSONIG00000017134)	uqcrc2a (ENSONIG00000017135)
Nile tilapia	MODERN SPECIES	16	GPR139 (ENSONIG00000017124)	proza (ENSONIG00000041508)	gprc5b (ENSONIG00000017118)	iqck (ENSONIG00000041881)	ENSONIG00000028194	sun1b (ENSONIG00000017115)	ENSONIG00000017113	ENSONIG00000034762 #22	ENSONIG00000017112 #22	ENSONIG00000029432	ENSONIG00000042947 #22	ENSONIG00000036403 #22	ENSONIG00000041499	ENSONIG00000040200	ENSONIG00000015367 #22	ENSONIG00000005156 #22	ENSONIG00000033398	pdgfab (ENSONIG00000005157)	prkar1b (ENSONIG00000005159)	DNAAF5 (ENSONIG00000005166)	GDE1 (ENSONIG00000005169)	ENSONIG00000005179	trap1 (ENSONIG00000005173)	CREBBP (ENSONIG00000005180)	ADCY9 (ENSONIG00000005189)	srl (ENSONIG00000005192)	TFAP4 (ENSONIG00000016338)	glis2b (ENSONIG00000005197)	pam16 (ENSONIG00000005198)	coro7 (ENSONIG00000005200)	vasn (ENSONIG00000032638)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00390000007091.r.a.a #22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00390000007091.r.a.a #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00390000007091.r.a.a #22
Haplochromini_B	ANCESTRAL SPECIES	33	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d	ENSGT00940000168750	ENSGT00940000155830.e.b	ENSGT00390000007091.r.a.b.c.b #22	ENSGT00390000007091.r.a.a #22	ENSGT00390000007091.q.a.d #22	ENSGT00390000007091.q.b.a.a.a.b #22	ENSGT00940000159039.a	ENSGT00940000157513	ENSGT00390000005666	ENSGT00510000047820.k.a	ENSGT00940000160332.a	ENSGT01020000230401.b.b	ENSGT00940000155364.g.a	ENSGT00940000155577.g.b	ENSGT00940000157834.a	ENSGT00390000015189.e.a	ENSGT00940000158383.b	ENSGT00390000012037	ENSGT00940000156606
Zebra mbuna	MODERN SPECIES	82														ENSMZEG00005023437 #22	ENSMZEG00005023434 #22	ENSMZEG00005023431 #22	ENSMZEG00005023384 #22	ENSMZEG00005023379	ENSMZEG00005023374 #22
Eastern happy	MODERN SPECIES	16	ENSACLG00000027842	mfsd13al (ENSACLG00000027837)	kdelr2a (ENSACLG00000027835)	ENSACLG00000027832	GPR139 (ENSACLG00000027831)	proza (ENSACLG00000027825)	gprc5ba (ENSACLG00000027822)	iqck (ENSACLG00000027821)	sun1b (ENSACLG00000027807)	ENSACLG00000027802	ENSACLG00000027785 #22	ENSACLG00000027781 #22	ENSACLG00000027778 #22	ENSACLG00000027770 #22	ENSACLG00000027763 #22	ENSACLG00000027759 #22	ENSACLG00000027749 #22	ENSACLG00000027743 #22	ENSACLG00000027740 #22	ENSACLG00000027738	pdgfab (ENSACLG00000027736)	prkar1b (ENSACLG00000027733)	DNAAF5 (ENSACLG00000027731)	GDE1 (ENSACLG00000027727)	ENSACLG00000027726	trap1 (ENSACLG00000027723)	CREBBP (ENSACLG00000027700)	ADCY9 (ENSACLG00000027688)	srl (ENSACLG00000027685)	TFAP4 (ENSACLG00000027681)	glis2b (ENSACLG00000027679)
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00390000007091.r.a.b #22
Nile tilapia	DUPLICATION
Nile tilapia	MODERN SPECIES	69																ENSONIG00000038136 #22	ENSONIG00000032439 #22
Nile tilapia	MODERN SPECIES	69															ENSONIG00000038136 #22	ENSONIG00000032439 #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00390000007091.r.a.b #22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00390000007091.r.a.b #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00390000007091.r.a.b #22
Haplochromini_B	DUPLICATION
Haplochromini_B	DUPLICATION
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00390000007091.r.a.b.c.a #22
Zebra mbuna	MODERN SPECIES	199																ENSMZEG00005026592 #22
Eastern happy	MODERN SPECIES	16	trap1 (ENSACLG00000027723)	ENSACLG00000027726	GDE1 (ENSACLG00000027727)	DNAAF5 (ENSACLG00000027731)	prkar1b (ENSACLG00000027733)	pdgfab (ENSACLG00000027736)	ENSACLG00000027738	ENSACLG00000027740 #22	ENSACLG00000027743 #22	ENSACLG00000027749 #22	ENSACLG00000027759 #22	ENSACLG00000027763 #22	ENSACLG00000027770 #22	ENSACLG00000027778 #22	ENSACLG00000027781 #22	ENSACLG00000027785 #22	ENSACLG00000027802	sun1b (ENSACLG00000027807)	iqck (ENSACLG00000027821)	gprc5ba (ENSACLG00000027822)	proza (ENSACLG00000027825)	GPR139 (ENSACLG00000027831)	ENSACLG00000027832	kdelr2a (ENSACLG00000027835)	mfsd13al (ENSACLG00000027837)	ENSACLG00000027842	SDR42E2 (ENSACLG00000027845)	MOSMO (ENSACLG00000027858)	uqcrc2a (ENSACLG00000027864)	ENSACLG00000027866	anks4b (ENSACLG00000027868)
Haplochromini_B	ANCESTRAL SPECIES	33	ENSGT00390000012037	ENSGT00940000158383.b	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000007091.q.b.a.a.a.b #22	ENSGT00390000007091.q.a.d #22	ENSGT00390000007091.r.a.a #22	ENSGT00390000007091.r.a.b.c.b #22	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000175471	ENSGT00390000004010.a.b.a.a	ENSGT00940000164377	ENSGT00390000018570.a.a.b	ENSGT00940000160393	ENSGT00390000018266	ENSGT00940000166251	ENSGT00940000166319	ENSGT00390000017548.a	ENSGT00940000165478
Zebra mbuna	MODERN SPECIES	1107	vasnb (ENSMZEG00005004711)	coro7 (ENSMZEG00005004668)	pam16 (ENSMZEG00005004640)	glis2b (ENSMZEG00005004626)	TFAP4 (ENSMZEG00005004597)	srl (ENSMZEG00005004548)	ADCY9 (ENSMZEG00005004507)	CREBBP (ENSMZEG00005004405)	trap1 (ENSMZEG00005004353)	ENSMZEG00005004372	GDE1 (ENSMZEG00005004336)	DNAAF5 (ENSMZEG00005004317)	prkar1b (ENSMZEG00005004293)	pdgfab (ENSMZEG00005004261)	ENSMZEG00005004230 #22	ENSMZEG00005004202 #22	ENSMZEG00005004187	sun1b (ENSMZEG00005004086)	gprc5ba (ENSMZEG00005004049)	proza (ENSMZEG00005004019)	GPR139 (ENSMZEG00005004002)	ENSMZEG00005003974	kdelr2a (ENSMZEG00005003960)	mfsd13al (ENSMZEG00005003924)	ENSMZEG00005003913	SDR42E2 (ENSMZEG00005003838)	ENSMZEG00005003812	uqcrc2a (ENSMZEG00005003799)	ENSMZEG00005003785	anks4b (ENSMZEG00005003779)	ENSMZEG00005003737
Eastern happy	MODERN SPECIES	53															ENSACLG00000009407	ENSACLG00000009378 #22	ENSACLG00000009368	sun1b (ENSACLG00000009247)
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00390000007091.r.a.b.d #22
Zebra mbuna	MODERN SPECIES	82											ENSMZEG00005023374 #22	ENSMZEG00005023379	ENSMZEG00005023384 #22	ENSMZEG00005023431 #22	ENSMZEG00005023434 #22	ENSMZEG00005023437 #22
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00390000007091.r.b #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00390000007091.r.b #22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00390000007091.r.b #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00390000007091.r.b #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00390000007091.r.b #22
Eastern happy	MODERN SPECIES	9	ENSACLG00000005206	cahz (ENSACLG00000005214)	dlgap1a (ENSACLG00000005240)	ptf1a (ENSACLG00000005296)	ENSACLG00000005305	ENSACLG00000005333	fam110b (ENSACLG00000006087)	ENSACLG00000006111	ENSACLG00000006124	ENSACLG00000006148	ENSACLG00000006159	cnpy1 (ENSACLG00000006171)	en2b (ENSACLG00000006181)	paxip1 (ENSACLG00000006185)	ENSACLG00000006203	ENSACLG00000006535 #22	ENSACLG00000006579
Pomacentridae	DUPLICATION
Pomacentridae	DUPLICATION
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00390000007091.s.a #22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00390000007091.s.a #22
Amphiprion	ANCESTRAL SPECIES																	ENSGT00390000007091.s.a #22
Orange clownfish	DUPLICATION
Orange clownfish	MODERN SPECIES	5	ENSAPEG00000009504	PITPNC1 (ENSAPEG00000009478)	slc25a19 (ENSAPEG00000009453)	mif4gda (ENSAPEG00000009426)	mrps7 (ENSAPEG00000009421)	GGA3 (ENSAPEG00000009405)	NUP85 (ENSAPEG00000009318)	ENSAPEG00000009292	jpt1b (ENSAPEG00000009261)	ENSAPEG00000009244	ENSAPEG00000009224	ENSAPEG00000009202	septin9a (ENSAPEG00000009133)	TNRC6C (ENSAPEG00000009020)	ENSAPEG00000009002	ENSAPEG00000008962 #22	ENSAPEG00000008925	ENSAPEG00000008911	znf207a (ENSAPEG00000008888)	zgc:153240 (ENSAPEG00000008841)	rhot1a (ENSAPEG00000008727)	ENSAPEG00000008673	ENSAPEG00000008653	KHSRP (ENSAPEG00000008575)	rfx1a (ENSAPEG00000008546)	rln3a (ENSAPEG00000008528)	ENSAPEG00000008511	ENSAPEG00000008429	ENSAPEG00000008404	ENSAPEG00000008389	dhps (ENSAPEG00000008349)
Orange clownfish	MODERN SPECIES	5	dnaja3a (ENSAPEG00000006783)	coro7 (ENSAPEG00000006838)	vasnb (ENSAPEG00000006850)	pam16 (ENSAPEG00000006860)	glis2b (ENSAPEG00000006871)	TFAP4 (ENSAPEG00000006876)	srl (ENSAPEG00000006911)	ADCY9 (ENSAPEG00000006950)	CREBBP (ENSAPEG00000006999)	trap1 (ENSAPEG00000007187)	pdgfab (ENSAPEG00000007276)	prkar1b (ENSAPEG00000007329)	DNAAF5 (ENSAPEG00000007365)	GDE1 (ENSAPEG00000007380)	ENSAPEG00000007388	ENSAPEG00000007405 #22	ENSAPEG00000007463 #22	NACC1 (ENSAPEG00000007488)	ENSAPEG00000007534	CACNA1A (ENSAPEG00000007549)	alkbh7 (ENSAPEG00000007685)	gtf2f1 (ENSAPEG00000007714)	ENSAPEG00000007758	ENSAPEG00000007786	ELFN2 (ENSAPEG00000007928)	sgsm3 (ENSAPEG00000007945)	gtpbp1 (ENSAPEG00000008015)	lgals2a (ENSAPEG00000008055)	ENSAPEG00000008096	luc7l3 (ENSAPEG00000008154)	ANKRD40 (ENSAPEG00000008168)
Spiny chromis	MODERN SPECIES	3491																ENSAPOG00000010253 #22
Bicolor damselfish	MODERN SPECIES	773					ENSSPAG00000013804	ENSSPAG00000013777	rffl (ENSSPAG00000013748)	eif4h (ENSSPAG00000013718)	ANO7 (ENSSPAG00000013673)	atg16l1 (ENSSPAG00000013609)	ENSSPAG00000013590	ppp1r14ab (ENSSPAG00000013585)	ENSSPAG00000013553	ENSSPAG00000013546	zgc:171927 (ENSSPAG00000013533)	ENSSPAG00000013498 #22
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00390000007091.s.b #22
Bicolor damselfish	MODERN SPECIES	2677																ENSSPAG00000014020 #22
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00390000007091.t #22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00390000007091.t #22
Amphiprion	ANCESTRAL SPECIES	31	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b	ENSGT00940000158594	ENSGT00940000155025.B.j	ENSGT00940000156054.c.a	ENSGT00940000157282	ENSGT00940000159737.d	ENSGT00940000163334.d	ENSGT00940000177484	ENSGT00440000038032	ENSGT00390000014585	ENSGT00940000156518.B	ENSGT00900000141021.b.b.e	ENSGT00940000159327.u.a	ENSGT00390000007091.t #22	ENSGT00940000178042	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT01020000230401.b.b	ENSGT00940000155364.g.a	ENSGT00940000155577.g.b	ENSGT00940000157834.a	ENSGT00390000015189.e.a	ENSGT00940000158383.b	ENSGT00390000012037	ENSGT00940000156606	ENSGT00940000159318.n.a	ENSGT00940000155280.f
Orange clownfish	MODERN SPECIES	5	ENSAPEG00000008172	ANKRD40 (ENSAPEG00000008168)	luc7l3 (ENSAPEG00000008154)	ENSAPEG00000008096	lgals2a (ENSAPEG00000008055)	gtpbp1 (ENSAPEG00000008015)	sgsm3 (ENSAPEG00000007945)	ELFN2 (ENSAPEG00000007928)	ENSAPEG00000007786	ENSAPEG00000007758	gtf2f1 (ENSAPEG00000007714)	alkbh7 (ENSAPEG00000007685)	CACNA1A (ENSAPEG00000007549)	ENSAPEG00000007534	NACC1 (ENSAPEG00000007488)	ENSAPEG00000007463 #22	ENSAPEG00000007405 #22	ENSAPEG00000007388	GDE1 (ENSAPEG00000007380)	DNAAF5 (ENSAPEG00000007365)	prkar1b (ENSAPEG00000007329)	pdgfab (ENSAPEG00000007276)	trap1 (ENSAPEG00000007187)	CREBBP (ENSAPEG00000006999)	ADCY9 (ENSAPEG00000006950)	srl (ENSAPEG00000006911)	TFAP4 (ENSAPEG00000006876)	glis2b (ENSAPEG00000006871)	pam16 (ENSAPEG00000006860)	vasnb (ENSAPEG00000006850)	coro7 (ENSAPEG00000006838)
Clown anemonefish	MODERN SPECIES	3243						ENSAOCG00000007587	kcng4a (ENSAOCG00000007605)	ENSAOCG00000007616	ENSAOCG00000007716	ENSAOCG00000007748	gtf2f1 (ENSAOCG00000007821)	alkbh7 (ENSAOCG00000007846)	CACNA1A (ENSAOCG00000009888)	ENSAOCG00000002050	NACC1 (ENSAOCG00000010247)	ENSAOCG00000001931 #22	ENSAOCG00000010300	GDE1 (ENSAOCG00000010319)
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	451															ENSGT00940000159039.a.a	ENSGT00390000007091.u #22
Salmoninae	ANCESTRAL SPECIES		ENSGT00940000159328.t	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b.c	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666.m	ENSGT00940000157513.v.a.a	ENSGT00940000159039.a.a	ENSGT00390000007091.u #22	ENSGT00940000177320.a	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000155366.b.a.a	ENSGT00940000165523.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00950000182849.B.c.a.b.b.c.b	ENSGT00950000182849.B.c.a.b.b.d	ENSGT01100000263497.E.a.a.c.a	ENSGT00950000182849.B.c.a.b.b.c.a	ENSGT00390000008063
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000007091.u.a #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000007091.u.a #22
Rainbow trout	DUPLICATION
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000052432	dhps (ENSOMYG00000011391)	ENSOMYG00000069098	ENSOMYG00000055536	ENSOMYG00000065482	ENSOMYG00000072837	ENSOMYG00000050121	ENSOMYG00000035069	proza (ENSOMYG00000069843)	ENSOMYG00000028774	iqck (ENSOMYG00000029764)	ENSOMYG00000060946	ENSOMYG00000005003	ENSOMYG00000004857 #22	ENSOMYG00000056200	ENSOMYG00000004614 #22	ENSOMYG00000022872 #22	ENSOMYG00000064495	ENSOMYG00000038811	ENSOMYG00000058630	PDGFA (ENSOMYG00000057868)	ENSOMYG00000053404	ENSOMYG00000050655	ENSOMYG00000075244	ENSOMYG00000007546	DNAAF5 (ENSOMYG00000007532)	ENSOMYG00000054393	ENSOMYG00000054077	ENSOMYG00000064716	TRAP1 (ENSOMYG00000007587)	CREBBP (ENSOMYG00000076525)
Rainbow trout	MODERN SPECIES	4	dhps (ENSOMYG00000034989)	ENSOMYG00000074218	ENSOMYG00000034887	ENSOMYG00000075043	ENSOMYG00000034904	ENSOMYG00000069229	ENSOMYG00000035055	ENSOMYG00000035060	proza (ENSOMYG00000035089)	ENSOMYG00000035127	iqck (ENSOMYG00000051349)	ENSOMYG00000067516	ENSOMYG00000035206	ENSOMYG00000035227 #22	ENSOMYG00000073869	ENSOMYG00000035191 #22	ENSOMYG00000060407	ENSOMYG00000069599	ENSOMYG00000035143 #22	ENSOMYG00000070721	ENSOMYG00000038960	PDGFA (ENSOMYG00000007875)	ENSOMYG00000058161	DNAAF5 (ENSOMYG00000007726)	ENSOMYG00000007505	ENSOMYG00000007288	TRAP1 (ENSOMYG00000006989)	CREBBP (ENSOMYG00000006887)	ADCY9 (ENSOMYG00000006738)	srl (ENSOMYG00000006662)	ENSOMYG00000049876
Rainbow trout	MODERN SPECIES	3	ADCY9 (ENSOMYG00000073580)	CREBBP (ENSOMYG00000076525)	TRAP1 (ENSOMYG00000007587)	ENSOMYG00000064716	ENSOMYG00000054077	ENSOMYG00000054393	DNAAF5 (ENSOMYG00000007532)	ENSOMYG00000007546	ENSOMYG00000075244	ENSOMYG00000050655	ENSOMYG00000053404	PDGFA (ENSOMYG00000057868)	ENSOMYG00000058630	ENSOMYG00000038811	ENSOMYG00000064495	ENSOMYG00000022872 #22	ENSOMYG00000004614 #22	ENSOMYG00000056200	ENSOMYG00000004857 #22	ENSOMYG00000005003	ENSOMYG00000060946	iqck (ENSOMYG00000029764)	ENSOMYG00000028774	proza (ENSOMYG00000069843)	ENSOMYG00000035069	ENSOMYG00000050121	ENSOMYG00000072837	ENSOMYG00000065482	ENSOMYG00000055536	ENSOMYG00000069098	dhps (ENSOMYG00000011391)
Oncorhynchus_a	ANCESTRAL SPECIES	98	ENSGT00940000156606.p.a.a	ENSGT00940000158383.b.c.a	ENSGT00940000156606.p.b	ENSGT00940000158383.b.c.b	ENSGT00390000015189.e.a.b	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666.m	ENSGT00940000157513.v.a.a	ENSGT00940000159039.a.a.a	ENSGT00390000007091.u.b #22	ENSGT00390000007091.u.a #22	ENSGT00390000004090	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000155366.b.a.a	ENSGT00940000165523.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00950000182849.B.c.a.b.b.c.b	ENSGT00390000008063	ENSGT01100000263497.E.a.a.c.b	ENSGT01100000263497.E.a.a.c.a	ENSGT00390000006806
Coho salmon	MODERN SPECIES	35	vasnb (ENSOKIG00005048429)	ENSOKIG00005048425	CORO7 (ENSOKIG00005047685)	glis2b (ENSOKIG00005047522)	TFAP4 (ENSOKIG00005047510)	srl (ENSOKIG00005047493)	ADCY9 (ENSOKIG00005047470)	CREBBP (ENSOKIG00005045682)	trap1 (ENSOKIG00005044390)	ENSOKIG00005044293	GDE1 (ENSOKIG00005044233)	DNAAF5 (ENSOKIG00005044161)	prkar1b (ENSOKIG00005044082)	pdgfab (ENSOKIG00005044049)	ENSOKIG00005044004 #22	ENSOKIG00005043954 #22	ENSOKIG00005043926	ENSOKIG00005043918	ENSOKIG00005043886	iqck (ENSOKIG00005043858)	GPRC5B (ENSOKIG00005043846)	proza (ENSOKIG00005043812)	GPR139 (ENSOKIG00005043802)	ENSOKIG00005043790	sstr5 (ENSOKIG00005043781)	ENSOKIG00005043771	ENSOKIG00005043764	NHERF2 (ENSOKIG00005043735)	ENSOKIG00005043672	dhps (ENSOKIG00005043521)	ENSOKIG00005043500
Salmo	ANCESTRAL SPECIES																	ENSGT00390000007091.u.a #22
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000119138	ENSSSAG00000107730	ENSSSAG00000087327	ENSSSAG00000092135	ENSSSAG00000042293	ENSSSAG00000065225	ENSSSAG00000063719	ENSSSAG00000113041	proza (ENSSSAG00000004105)	ENSSSAG00000045525	iqck (ENSSSAG00000105173)	ENSSSAG00000045560	ENSSSAG00000083788	ENSSSAG00000085178	ENSSSAG00000003636 #22	ENSSSAG00000096468 #22	ENSSSAG00000084919 #22	ENSSSAG00000103997	ENSSSAG00000045701	PDGFA (ENSSSAG00000096246)	ENSSSAG00000092810	DNAAF5 (ENSSSAG00000106395)	ENSSSAG00000042196	TRAP1 (ENSSSAG00000090988)	ENSSSAG00000105352	CREBBP (ENSSSAG00000044384)	ENSSSAG00000096873	ADCY9 (ENSSSAG00000049393)	srl (ENSSSAG00000049415)	TFAP4 (ENSSSAG00000118525)	glis2b (ENSSSAG00000096671)
Salmoninae_a	ANCESTRAL SPECIES	52	ENSGT00940000159318.n.a	ENSGT00940000156606.p.a.b.a	ENSGT00390000012037	ENSGT00940000158383.b.c.a	ENSGT00940000158383.b.d	ENSGT00390000015189.e.a.b	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666.m	ENSGT00940000157513.v.a.a	ENSGT00940000159039.a.a	ENSGT00390000007091.u.b #22	ENSGT00390000007091.v.a.a.a #22	ENSGT00940000177320.b	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000155366.b.a.a	ENSGT00940000165523.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00950000182849.B.c.a.b.b.c.b	ENSGT00950000182849.B.c.a.b.b.d	ENSGT01100000263497.E.a.a.c.a	ENSGT00950000182849.B.c.a.b.b.c.a
Oncorhynchus	ANCESTRAL SPECIES	217											ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666.m	ENSGT00940000157513.v.a.a	ENSGT00940000159039.a.a.a	ENSGT00390000007091.u.b #22
Oncorhynchus_a	ANCESTRAL SPECIES	98	ENSGT00940000159318.n.a	ENSGT00940000156606.p.a.a	ENSGT00940000158383.b.c.a	ENSGT00940000156606.p.b	ENSGT00940000158383.b.c.b	ENSGT00390000015189.e.a.b	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666.m	ENSGT00940000157513.v.a.a	ENSGT00940000159039.a.a.a	ENSGT00390000007091.u.b #22	ENSGT00390000007091.u.a #22	ENSGT00390000004090	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000155366.b.a.a	ENSGT00940000165523.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00950000182849.B.c.a.b.b.c.b	ENSGT00390000008063	ENSGT01100000263497.E.a.a.c.b	ENSGT01100000263497.E.a.a.c.a
Coho salmon	DUPLICATION
Coho salmon	DUPLICATION
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	556																ENSOKIG00005042798 #22
Coho salmon	MODERN SPECIES	862																ENSOKIG00005041780 #22
Coho salmon	MODERN SPECIES	35	dnaja3a (ENSOKIG00005048448)	vasnb (ENSOKIG00005048429)	ENSOKIG00005048425	CORO7 (ENSOKIG00005047685)	glis2b (ENSOKIG00005047522)	TFAP4 (ENSOKIG00005047510)	srl (ENSOKIG00005047493)	ADCY9 (ENSOKIG00005047470)	CREBBP (ENSOKIG00005045682)	trap1 (ENSOKIG00005044390)	ENSOKIG00005044293	GDE1 (ENSOKIG00005044233)	DNAAF5 (ENSOKIG00005044161)	prkar1b (ENSOKIG00005044082)	pdgfab (ENSOKIG00005044049)	ENSOKIG00005044004 #22	ENSOKIG00005043954 #22	ENSOKIG00005043926	ENSOKIG00005043918	ENSOKIG00005043886	iqck (ENSOKIG00005043858)	GPRC5B (ENSOKIG00005043846)	proza (ENSOKIG00005043812)	GPR139 (ENSOKIG00005043802)	ENSOKIG00005043790	sstr5 (ENSOKIG00005043781)	ENSOKIG00005043771	ENSOKIG00005043764	NHERF2 (ENSOKIG00005043735)	ENSOKIG00005043672	dhps (ENSOKIG00005043521)
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	621																ENSOKIG00005035897 #22
Coho salmon	MODERN SPECIES	770																ENSOKIG00005022467 #22
Rainbow trout	MODERN SPECIES	4	CORO7 (ENSOMYG00000006224)	ENSOMYG00000059656	TFAP4 (ENSOMYG00000076540)	ENSOMYG00000049876	srl (ENSOMYG00000006662)	ADCY9 (ENSOMYG00000006738)	CREBBP (ENSOMYG00000006887)	TRAP1 (ENSOMYG00000006989)	ENSOMYG00000007288	ENSOMYG00000007505	DNAAF5 (ENSOMYG00000007726)	ENSOMYG00000058161	PDGFA (ENSOMYG00000007875)	ENSOMYG00000038960	ENSOMYG00000070721	ENSOMYG00000035143 #22	ENSOMYG00000069599	ENSOMYG00000060407	ENSOMYG00000035191 #22	ENSOMYG00000073869	ENSOMYG00000035227 #22	ENSOMYG00000035206	ENSOMYG00000067516	iqck (ENSOMYG00000051349)	ENSOMYG00000035127	proza (ENSOMYG00000035089)	ENSOMYG00000035060	ENSOMYG00000035055	ENSOMYG00000069229	ENSOMYG00000034904	ENSOMYG00000075043
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	8	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606	ENSGT00390000012037	ENSGT00940000158383.b.c	ENSGT00390000015189.e.a	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a.b	ENSGT00390000007091.v.a #22	ENSGT00940000177320	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000155366.b.a.a	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00950000182849.B.c.a.b.b	ENSGT00390000008063	ENSGT01100000263497.E.a.a	ENSGT00390000006806	ENSGT00940000156708.a.b
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	2073																ENSGT00390000007091.v.a.a.a #22	ENSGT00940000177320.b
Huchen	MODERN SPECIES	1367	ENSHHUG00000035376	UBE2D3 (ENSHHUG00000035380)	NFKB1 (ENSHHUG00000035733)	DGKQ (ENSHHUG00000035857)	ENSHHUG00000035929	aup1 (ENSHHUG00000035973)	ENSHHUG00000036010	sytl4 (ENSHHUG00000036012)	SRPX2 (ENSHHUG00000036036)	tspan7 (ENSHHUG00000036043)	ENSHHUG00000036116	cstf2 (ENSHHUG00000036119)	nox1 (ENSHHUG00000036132)	xkrx (ENSHHUG00000036526)	ENSHHUG00000036529	ENSHHUG00000036539 #22	ENSHHUG00000036624 #22	ENSHHUG00000036647 #22	ENSHHUG00000036684	ENSHHUG00000036689	ENSHHUG00000036702
Salmoninae_a	ANCESTRAL SPECIES	52	ENSGT00940000156606.p.a.b.a	ENSGT00390000012037	ENSGT00940000158383.b.c.a	ENSGT00940000158383.b.d	ENSGT00390000015189.e.a.b	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a	ENSGT00390000005666.m	ENSGT00940000157513.v.a.a	ENSGT00940000159039.a.a	ENSGT00390000007091.u.b #22	ENSGT00390000007091.v.a.a.a #22	ENSGT00940000177320.b	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000155366.b.a.a	ENSGT00940000165523.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00950000182849.B.c.a.b.b.c.b	ENSGT00950000182849.B.c.a.b.b.d	ENSGT01100000263497.E.a.a.c.a	ENSGT00950000182849.B.c.a.b.b.c.a	ENSGT00390000008063
Salmo	DUPLICATION
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	149	ENSGT00390000015189.e.a.b	ENSGT00940000157834.a.e	ENSGT00940000155577.g.b.d	ENSGT00940000155364.g.a.h	ENSGT01020000230401.b.b	ENSGT00940000160332.a	ENSGT00510000047820.k.a.g	ENSGT00390000005666.m	ENSGT00940000157513.v.a.a	ENSGT00940000159039.a.a	ENSGT00510000047820.k.a.h	ENSGT00390000005666.n	ENSGT00940000157513.v.a.b	ENSGT00940000159039.a.b	ENSGT00940000154311.a.b.cb.a.a.a.d	ENSGT00390000007091.v.a.a.a.a.a #22	ENSGT00940000155830.e.b.j	ENSGT00940000168750	ENSGT00950000182961.b.d.g	ENSGT00940000159473.f	ENSGT00940000155366.b.a.a	ENSGT00940000165523.b.a
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000090348	dnaja3a (ENSSSAG00000038141)	ENSSSAG00000037690	vasnb (ENSSSAG00000107567)	ENSSSAG00000089119	glis2b (ENSSSAG00000087970)	TFAP4 (ENSSSAG00000094879)	srl (ENSSSAG00000086429)	CREBBP (ENSSSAG00000099450)	TRAP1 (ENSSSAG00000042515)	CP014 (ENSSSAG00000042482)	ENSSSAG00000042475	ENSSSAG00000041650	ENSSSAG00000001576	ENSSSAG00000003566	ENSSSAG00000090113 #22	ENSSSAG00000045681	ENSSSAG00000004114 #22	ENSSSAG00000004128	ENSSSAG00000037019	ENSSSAG00000087246	ENSSSAG00000090307	ENSSSAG00000084501	fa10 (ENSSSAG00000045461)	ENSSSAG00000091157	ENSSSAG00000042285	ENSSSAG00000045421	ENSSSAG00000045411	ENSSSAG00000114708	ENSSSAG00000023283	ENSSSAG00000101385
River trout	MODERN SPECIES	25	ENSSTUG00000036931	HMOX2 (ENSSTUG00000036917)	dnaja3a (ENSSTUG00000036873)	TFAP4 (ENSSTUG00000036865)	ENSSTUG00000036861	srl (ENSSTUG00000049312)	ADCY9 (ENSSTUG00000049305)	CREBBP (ENSSTUG00000048792)	trap1 (ENSSTUG00000048328)	MCRIP2 (ENSSTUG00000048300)	GDE1 (ENSSTUG00000048294)	DNAAF5 (ENSSTUG00000048284)	prkar1b (ENSSTUG00000048261)	PDGFA (ENSSTUG00000048253)	ENSSTUG00000048228	ENSSTUG00000048106 #22	sun1b (ENSSTUG00000048030)	iqck (ENSSTUG00000048013)	gprc5ba (ENSSTUG00000048006)	proza (ENSSTUG00000047987)	ENSSTUG00000047982	GPR139 (ENSSTUG00000047968)	ENSSTUG00000047953	sstr5 (ENSSTUG00000047942)	ENSSTUG00000047937	ENSSTUG00000047933	ENSSTUG00000047915	dhps (ENSSTUG00000047880)	ENSSTUG00000047873	ENSSTUG00000047862	ENSSTUG00000047807
Salmo	ANCESTRAL SPECIES																	ENSGT00390000007091.v.a.a.a.a.b #22
Atlantic salmon	MODERN SPECIES	25	TFAP4 (ENSSSAG00000118525)	srl (ENSSSAG00000049415)	ADCY9 (ENSSSAG00000049393)	ENSSSAG00000096873	CREBBP (ENSSSAG00000044384)	ENSSSAG00000105352	TRAP1 (ENSSSAG00000090988)	ENSSSAG00000042196	DNAAF5 (ENSSSAG00000106395)	ENSSSAG00000092810	PDGFA (ENSSSAG00000096246)	ENSSSAG00000045701	ENSSSAG00000103997	ENSSSAG00000084919 #22	ENSSSAG00000096468 #22	ENSSSAG00000003636 #22	ENSSSAG00000085178	ENSSSAG00000083788	ENSSSAG00000045560	iqck (ENSSSAG00000105173)	ENSSSAG00000045525	proza (ENSSSAG00000004105)	ENSSSAG00000113041	ENSSSAG00000063719	ENSSSAG00000065225	ENSSSAG00000042293	ENSSSAG00000092135	ENSSSAG00000087327	ENSSSAG00000107730	ENSSSAG00000119138	dhps (ENSSSAG00000045270)
Salmo	ANCESTRAL SPECIES	103																ENSGT00390000007091.v.a.a.a.b #22	ENSGT00940000155830.e.b.i	ENSGT01000000220522	ENSGT00940000154311.a.b.cb.a.a.a.c	ENSGT00950000182961.b.d.h	ENSGT00940000154505.A.d	ENSGT00940000159473.e	ENSGT00940000165523.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT01090000260418	ENSGT00950000182849.B.c.a.b.b.d	ENSGT00390000008063.e	ENSGT00940000155603.B.d	ENSGT00940000154396.b.a.a.a.g.b.a	ENSGT01050000244879.a.b.e
River trout	MODERN SPECIES		vasnb (ENSSTUG00000003960)	CORO7 (ENSSTUG00000003083)	glis2b (ENSSTUG00000003001)	TFAP4 (ENSSTUG00000002970)	ENSSTUG00000002965	srl (ENSSTUG00000002893)	ADCY9 (ENSSTUG00000002886)	CREBBP (ENSSTUG00000001481)	trap1 (ENSSTUG00000001076)	ENSSTUG00000001046	GDE1 (ENSSTUG00000001025)	DNAAF5 (ENSSTUG00000000986)	prkar1b (ENSSTUG00000000978)	parp14rs1 (ENSSTUG00000000946)	ENSSTUG00000000915	ENSSTUG00000000710 #22	sun1b (ENSSTUG00000000623)	iqck (ENSSTUG00000000606)	gprc5ba (ENSSTUG00000000599)	proza (ENSSTUG00000000578)	GPR139 (ENSSTUG00000000566)	ENSSTUG00000000556	ENSSTUG00000000549	ENSSTUG00000000543	ENSSTUG00000000541	ENSSTUG00000000535	ENSSTUG00000000528	NHERF2 (ENSSTUG00000000505)	dhps (ENSSTUG00000000450)	ENSSTUG00000000438	ENSSTUG00000000413
Oncorhynchus	ANCESTRAL SPECIES	44	ENSGT00940000155289.C	ENSGT00810000125541	ENSGT00940000175647.f	ENSGT00390000013319	ENSGT00390000017673.a.b.a.a	ENSGT00940000155280.f	ENSGT00940000159318.n.a	ENSGT00940000156606.p.a.b.a	ENSGT00940000158383.b.d	ENSGT00390000015189.e.a.b	ENSGT00940000157834.a	ENSGT00940000155577.g.b	ENSGT00940000155364.g.a	ENSGT01020000230401.b.b	ENSGT00940000178042	ENSGT00390000007091.v.a.a.a #22	ENSGT00940000177320.b	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00950000182961.b.d	ENSGT00940000154505.A.d	ENSGT00940000159473	ENSGT00940000155366.b.a.a	ENSGT00940000165523.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00950000182849.B.c.a.b.b.c.b	ENSGT00950000182849.B.c.a.b.b.c.a	ENSGT00390000008063	ENSGT01100000263497.E.a.a.c.b	ENSGT00390000006806
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000064716	ENSOMYG00000054077	ENSOMYG00000054393	DNAAF5 (ENSOMYG00000007532)	ENSOMYG00000007546	ENSOMYG00000075244	ENSOMYG00000050655	ENSOMYG00000053404	PDGFA (ENSOMYG00000057868)	ENSOMYG00000058630	ENSOMYG00000038811	ENSOMYG00000064495	ENSOMYG00000022872 #22	ENSOMYG00000004614 #22	ENSOMYG00000056200	ENSOMYG00000004857 #22	ENSOMYG00000005003	ENSOMYG00000060946	iqck (ENSOMYG00000029764)	ENSOMYG00000028774	proza (ENSOMYG00000069843)	ENSOMYG00000035069	ENSOMYG00000050121	ENSOMYG00000072837	ENSOMYG00000065482	ENSOMYG00000055536	ENSOMYG00000069098	dhps (ENSOMYG00000011391)	ENSOMYG00000052432	ENSOMYG00000011359	ENSOMYG00000011315
Rainbow trout	MODERN SPECIES	4	ADCY9 (ENSOMYG00000006738)	CREBBP (ENSOMYG00000006887)	TRAP1 (ENSOMYG00000006989)	ENSOMYG00000007288	ENSOMYG00000007505	DNAAF5 (ENSOMYG00000007726)	ENSOMYG00000058161	PDGFA (ENSOMYG00000007875)	ENSOMYG00000038960	ENSOMYG00000070721	ENSOMYG00000035143 #22	ENSOMYG00000069599	ENSOMYG00000060407	ENSOMYG00000035191 #22	ENSOMYG00000073869	ENSOMYG00000035227 #22	ENSOMYG00000035206	ENSOMYG00000067516	iqck (ENSOMYG00000051349)	ENSOMYG00000035127	proza (ENSOMYG00000035089)	ENSOMYG00000035060	ENSOMYG00000035055	ENSOMYG00000069229	ENSOMYG00000034904	ENSOMYG00000075043	ENSOMYG00000034887	ENSOMYG00000074218	dhps (ENSOMYG00000034989)	ENSOMYG00000069096	ENSOMYG00000034947
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000007091.v.a.a.b #22
Huchen	MODERN SPECIES	1367	UBE2D3 (ENSHHUG00000035380)	NFKB1 (ENSHHUG00000035733)	DGKQ (ENSHHUG00000035857)	ENSHHUG00000035929	aup1 (ENSHHUG00000035973)	ENSHHUG00000036010	sytl4 (ENSHHUG00000036012)	SRPX2 (ENSHHUG00000036036)	tspan7 (ENSHHUG00000036043)	ENSHHUG00000036116	cstf2 (ENSHHUG00000036119)	nox1 (ENSHHUG00000036132)	xkrx (ENSHHUG00000036526)	ENSHHUG00000036529	ENSHHUG00000036539 #22	ENSHHUG00000036624 #22	ENSHHUG00000036647 #22	ENSHHUG00000036684	ENSHHUG00000036689	ENSHHUG00000036702
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000007091.v.a.a.b #22
Salmo	ANCESTRAL SPECIES																	ENSGT00390000007091.v.a.a.b #22
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000121668	glis2b (ENSSSAG00000096671)	TFAP4 (ENSSSAG00000118525)	srl (ENSSSAG00000049415)	ADCY9 (ENSSSAG00000049393)	ENSSSAG00000096873	CREBBP (ENSSSAG00000044384)	ENSSSAG00000105352	TRAP1 (ENSSSAG00000090988)	ENSSSAG00000042196	DNAAF5 (ENSSSAG00000106395)	ENSSSAG00000092810	PDGFA (ENSSSAG00000096246)	ENSSSAG00000045701	ENSSSAG00000103997	ENSSSAG00000084919 #22	ENSSSAG00000096468 #22	ENSSSAG00000003636 #22	ENSSSAG00000085178	ENSSSAG00000083788	ENSSSAG00000045560	iqck (ENSSSAG00000105173)	ENSSSAG00000045525	proza (ENSSSAG00000004105)	ENSSSAG00000113041	ENSSSAG00000063719	ENSSSAG00000065225	ENSSSAG00000042293	ENSSSAG00000092135	ENSSSAG00000087327	ENSSSAG00000107730
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000007091.v.a.b #22
Huchen	MODERN SPECIES	1673											ENSHHUG00000049202	ENSHHUG00000049193	ENSHHUG00000049179	ENSHHUG00000049172	ENSHHUG00000049169	ENSHHUG00000049155 #22	ENSHHUG00000049147	ENSHHUG00000049145	ENSHHUG00000049109 #22	ENSHHUG00000049088	ENSHHUG00000049083	ENSHHUG00000049079	ENSHHUG00000049072	sun1b (ENSHHUG00000049021)	iqck (ENSHHUG00000049010)	gprc5ba (ENSHHUG00000049006)	proza (ENSHHUG00000049002)
Northern pike	DUPLICATION
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	10	glis2b (ENSELUG00000015543)	TFAP4 (ENSELUG00000015590)	srl (ENSELUG00000015616)	ADCY9 (ENSELUG00000015643)	CREBBP (ENSELUG00000015929)	trap1 (ENSELUG00000015995)	ENSELUG00000016019	GDE1 (ENSELUG00000016036)	DNAAF5 (ENSELUG00000016052)	prkar1b (ENSELUG00000016083)	pdgfab (ENSELUG00000000607)	ENSELUG00000029088	ENSELUG00000026249	ENSELUG00000030605	ENSELUG00000016154 #22	ENSELUG00000016238 #22	ENSELUG00000016324 #22	ENSELUG00000016356 #22	sun1b (ENSELUG00000016540)	iqck (ENSELUG00000016598)	gprc5ba (ENSELUG00000016610)	proza (ENSELUG00000016651)	GPR139 (ENSELUG00000032021)	ENSELUG00000016701	sstr5 (ENSELUG00000016737)	ENSELUG00000030824	ENSELUG00000016756	NHERF2 (ENSELUG00000016778)	ENSELUG00000016808	dhps (ENSELUG00000016797)	ENSELUG00000016847
Northern pike	MODERN SPECIES	10	coro7 (ENSELUG00000015435)	glis2b (ENSELUG00000015543)	TFAP4 (ENSELUG00000015590)	srl (ENSELUG00000015616)	ADCY9 (ENSELUG00000015643)	CREBBP (ENSELUG00000015929)	trap1 (ENSELUG00000015995)	ENSELUG00000016019	GDE1 (ENSELUG00000016036)	DNAAF5 (ENSELUG00000016052)	prkar1b (ENSELUG00000016083)	pdgfab (ENSELUG00000000607)	ENSELUG00000029088	ENSELUG00000026249	ENSELUG00000030605	ENSELUG00000016154 #22	ENSELUG00000016238 #22	ENSELUG00000016324 #22	ENSELUG00000016356 #22	sun1b (ENSELUG00000016540)	iqck (ENSELUG00000016598)	gprc5ba (ENSELUG00000016610)	proza (ENSELUG00000016651)	GPR139 (ENSELUG00000032021)	ENSELUG00000016701	sstr5 (ENSELUG00000016737)	ENSELUG00000030824	ENSELUG00000016756	NHERF2 (ENSELUG00000016778)	ENSELUG00000016808	dhps (ENSELUG00000016797)
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	10	srl (ENSELUG00000015616)	ADCY9 (ENSELUG00000015643)	CREBBP (ENSELUG00000015929)	trap1 (ENSELUG00000015995)	ENSELUG00000016019	GDE1 (ENSELUG00000016036)	DNAAF5 (ENSELUG00000016052)	prkar1b (ENSELUG00000016083)	pdgfab (ENSELUG00000000607)	ENSELUG00000029088	ENSELUG00000026249	ENSELUG00000030605	ENSELUG00000016154 #22	ENSELUG00000016238 #22	ENSELUG00000016324 #22	ENSELUG00000016356 #22	sun1b (ENSELUG00000016540)	iqck (ENSELUG00000016598)	gprc5ba (ENSELUG00000016610)	proza (ENSELUG00000016651)	GPR139 (ENSELUG00000032021)	ENSELUG00000016701	sstr5 (ENSELUG00000016737)	ENSELUG00000030824	ENSELUG00000016756	NHERF2 (ENSELUG00000016778)	ENSELUG00000016808	dhps (ENSELUG00000016797)	ENSELUG00000016847	MGAT5B (ENSELUG00000016908)	sec14l1 (ENSELUG00000017017)
Northern pike	MODERN SPECIES	10	TFAP4 (ENSELUG00000015590)	srl (ENSELUG00000015616)	ADCY9 (ENSELUG00000015643)	CREBBP (ENSELUG00000015929)	trap1 (ENSELUG00000015995)	ENSELUG00000016019	GDE1 (ENSELUG00000016036)	DNAAF5 (ENSELUG00000016052)	prkar1b (ENSELUG00000016083)	pdgfab (ENSELUG00000000607)	ENSELUG00000029088	ENSELUG00000026249	ENSELUG00000030605	ENSELUG00000016154 #22	ENSELUG00000016238 #22	ENSELUG00000016324 #22	ENSELUG00000016356 #22	sun1b (ENSELUG00000016540)	iqck (ENSELUG00000016598)	gprc5ba (ENSELUG00000016610)	proza (ENSELUG00000016651)	GPR139 (ENSELUG00000032021)	ENSELUG00000016701	sstr5 (ENSELUG00000016737)	ENSELUG00000030824	ENSELUG00000016756	NHERF2 (ENSELUG00000016778)	ENSELUG00000016808	dhps (ENSELUG00000016797)	ENSELUG00000016847	MGAT5B (ENSELUG00000016908)
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00390000007091.v.b #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000007091.v.b #22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1673								ENSHHUG00000049202	ENSHHUG00000049193	ENSHHUG00000049179	ENSHHUG00000049172	ENSHHUG00000049169	ENSHHUG00000049155 #22	ENSHHUG00000049147	ENSHHUG00000049145	ENSHHUG00000049109 #22	ENSHHUG00000049088	ENSHHUG00000049083	ENSHHUG00000049079	ENSHHUG00000049072	sun1b (ENSHHUG00000049021)	iqck (ENSHHUG00000049010)	gprc5ba (ENSHHUG00000049006)	proza (ENSHHUG00000049002)
Huchen	MODERN SPECIES	1367	NFKB1 (ENSHHUG00000035733)	DGKQ (ENSHHUG00000035857)	ENSHHUG00000035929	aup1 (ENSHHUG00000035973)	ENSHHUG00000036010	sytl4 (ENSHHUG00000036012)	SRPX2 (ENSHHUG00000036036)	tspan7 (ENSHHUG00000036043)	ENSHHUG00000036116	cstf2 (ENSHHUG00000036119)	nox1 (ENSHHUG00000036132)	xkrx (ENSHHUG00000036526)	ENSHHUG00000036529	ENSHHUG00000036539 #22	ENSHHUG00000036624 #22	ENSHHUG00000036647 #22	ENSHHUG00000036684	ENSHHUG00000036689	ENSHHUG00000036702
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000007091.v.b #22
Salmo	ANCESTRAL SPECIES																	ENSGT00390000007091.v.b #22
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000037690	vasnb (ENSSSAG00000107567)	ENSSSAG00000089119	glis2b (ENSSSAG00000087970)	TFAP4 (ENSSSAG00000094879)	srl (ENSSSAG00000086429)	CREBBP (ENSSSAG00000099450)	TRAP1 (ENSSSAG00000042515)	CP014 (ENSSSAG00000042482)	ENSSSAG00000042475	ENSSSAG00000041650	ENSSSAG00000001576	ENSSSAG00000003566	ENSSSAG00000090113 #22	ENSSSAG00000045681	ENSSSAG00000004114 #22	ENSSSAG00000004128	ENSSSAG00000037019	ENSSSAG00000087246	ENSSSAG00000090307	ENSSSAG00000084501	fa10 (ENSSSAG00000045461)	ENSSSAG00000091157	ENSSSAG00000042285	ENSSSAG00000045421	ENSSSAG00000045411	ENSSSAG00000114708	ENSSSAG00000023283	ENSSSAG00000101385	ENSSSAG00000045230	dhys (ENSSSAG00000087202)
Otomorpha	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Atlantic herring	MODERN SPECIES	20	zgc:114123 (ENSCHAG00000023430)	TOP1 (ENSCHAG00000023109)	plcg1 (ENSCHAG00000022986)	zhx3b (ENSCHAG00000022957)	rab5if (ENSCHAG00000022947)	dhx35 (ENSCHAG00000022734)	mafba (ENSCHAG00000022719)	rnf114 (ENSCHAG00000022713)	spata2 (ENSCHAG00000022711)	opn7b (ENSCHAG00000022679)	slc9a8 (ENSCHAG00000022479)	b4galt5 (ENSCHAG00000022268)	EMILIN3 (ENSCHAG00000022249)	ENSCHAG00000022245	ENSCHAG00000022232	ENSCHAG00000022134 #22	ENSCHAG00000022130	csde1 (ENSCHAG00000020279)	nras (ENSCHAG00000020193)	ampd1 (ENSCHAG00000019158)	DENND2C (ENSCHAG00000019082)	bcas2 (ENSCHAG00000019048)	trim33 (ENSCHAG00000018593)	slc66a1 (ENSCHAG00000018565)	nr1h5 (ENSCHAG00000018560)	BRPF3 (ENSCHAG00000018370)	MAPK13 (ENSCHAG00000017614)	ENSCHAG00000017578	TBC1D22B (ENSCHAG00000017033)	pim1 (ENSCHAG00000016969)	ENSCHAG00000016925
Otophysi	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Characiphysae	ANCESTRAL SPECIES																	ENSGT00390000007091 #22
Characiphysae_b	ANCESTRAL SPECIES	56	ENSGT01000000214413.b.b	ENSGT00950000183196.A	ENSGT00940000160229	ENSGT00940000160933	ENSGT00940000165048.b	ENSGT01030000234579.A.a.f	ENSGT00890000139453.a	ENSGT01030000234582.f.b	ENSGT00390000018426	ENSGT00940000158439.n	ENSGT00940000156706.b	ENSGT00390000000288	ENSGT00940000164085.d.a	ENSGT00390000018761	ENSGT00510000047471	ENSGT00390000007091 #22	ENSGT00940000161226.b	ENSGT00940000158514	ENSGT00740000117097	ENSGT00940000161288	ENSGT00940000157434.d	ENSGT00390000002905	ENSGT00950000182767.b.a.b.b.b	ENSGT00940000160797	ENSGT00390000012668.h	ENSGT00390000003308.b	ENSGT00390000008196	ENSGT00940000163496.b.a	ENSGT00940000160701	ENSGT00950000183090.D	ENSGT00950000183066.a.a.b.g
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	1256																ENSEEEG00000005362 #22	FZD9 (ENSEEEG00000005363)
Electric eel	MODERN SPECIES	470								ENSEEEG00000022906	ENSEEEG00000022904	tbx2a (ENSEEEG00000022902)	acaca (ENSEEEG00000021260)	aatf (ENSEEEG00000021095)	lhx1b (ENSEEEG00000021093)	MRM1 (ENSEEEG00000021092)	mks1 (ENSEEEG00000021090)	ENSEEEG00000021085 #22
Characoidei	DUPLICATION
Characoidei	ANCESTRAL SPECIES	81	ENSGT00940000165048.b	ENSGT01030000234579.A.a.f	ENSGT00890000139453.a	ENSGT01030000234582.f.b	ENSGT00390000018426	ENSGT00940000164220.b.b.b.a.a	ENSGT01090000260179.c.a	ENSGT00940000164220.b.b.a	ENSGT00980000198660.c.a.a	ENSGT00940000158439.n	ENSGT00940000156706.b	ENSGT00390000000288	ENSGT00940000164085.d.a	ENSGT00390000018761	ENSGT00510000047471	ENSGT00390000007091.y #22	ENSGT00390000007091.z #22	ENSGT00940000161226.b	ENSGT00940000158514	ENSGT00740000117097	ENSGT00940000161288	ENSGT00940000157434.d	ENSGT00390000002905	ENSGT00950000182767.b.a.b.b.b	ENSGT00940000160797	ENSGT00390000012668.h	ENSGT00390000003308.b	ENSGT00390000008196	ENSGT00940000163496.b.a	ENSGT00940000160701	ENSGT00950000183090.D
Red-bellied piranha	MODERN SPECIES	2	ENSPNAG00000013927	mogat3b (ENSPNAG00000013941)	znhit1 (ENSPNAG00000013955)	ENSPNAG00000013968	ENSPNAG00000003006	ENSPNAG00000014002	ENSPNAG00000014016	ENSPNAG00000014036	ENSPNAG00000003015	tbx2a (ENSPNAG00000003030)	acaca (ENSPNAG00000003122)	aatf (ENSPNAG00000003150)	lhx1b (ENSPNAG00000014533)	MRM1 (ENSPNAG00000014551)	mks1 (ENSPNAG00000014618)	ENSPNAG00000003204 #22	ENSPNAG00000003209 #22	FZD9 (ENSPNAG00000003211)	fkbp6 (ENSPNAG00000014701)	zgc:193711 (ENSPNAG00000014708)	hspb2 (ENSPNAG00000014715)	cryabb (ENSPNAG00000003224)	cfap68 (ENSPNAG00000006593)	mia (ENSPNAG00000014743)	bicdl2 (ENSPNAG00000014787)	ENSPNAG00000014794	TOMM40L (ENSPNAG00000014799)	ufc1 (ENSPNAG00000014824)	gig2p (ENSPNAG00000014831)	fdxacb1 (ENSPNAG00000003284)	alg9 (ENSPNAG00000014895)
Mexicana tetra	MODERN SPECIES	250																ENSAMXG00000007311 #22
Characoidei	ANCESTRAL SPECIES	81	ENSGT01030000234579.A.a.f	ENSGT00890000139453.a	ENSGT01030000234582.f.b	ENSGT00390000018426	ENSGT00940000164220.b.b.b.a.a	ENSGT01090000260179.c.a	ENSGT00940000164220.b.b.a	ENSGT00980000198660.c.a.a	ENSGT00940000158439.n	ENSGT00940000156706.b	ENSGT00390000000288	ENSGT00940000164085.d.a	ENSGT00390000018761	ENSGT00510000047471	ENSGT00390000007091.y #22	ENSGT00390000007091.z #22	ENSGT00940000161226.b	ENSGT00940000158514	ENSGT00740000117097	ENSGT00940000161288	ENSGT00940000157434.d	ENSGT00390000002905	ENSGT00950000182767.b.a.b.b.b	ENSGT00940000160797	ENSGT00390000012668.h	ENSGT00390000003308.b	ENSGT00390000008196	ENSGT00940000163496.b.a	ENSGT00940000160701	ENSGT00950000183090.D	ENSGT00950000183066.a.a.b.g
Mexicana tetra	DUPLICATION
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	18	slc12a9 (ENSAMXG00000008383)	ENSAMXG00000041765	gnb2 (ENSAMXG00000008344)	mink1 (ENSAMXG00000008316)	PLD2 (ENSAMXG00000008278)	chrne (ENSAMXG00000040922)	gltpd2b (ENSAMXG00000039692)	atp1b2b (ENSAMXG00000032313)	ENSAMXG00000006977	mogat3b (ENSAMXG00000006991)	znhit1 (ENSAMXG00000041703)	ENSAMXG00000042597	ENSAMXG00000007048	ENSAMXG00000040308	ENSAMXG00000040258	ENSAMXG00000035650 #22	FZD9 (ENSAMXG00000025186)	fkbp6 (ENSAMXG00000007323)	zgc:193711 (ENSAMXG00000041386)	hspb2 (ENSAMXG00000034210)	cryabb (ENSAMXG00000007337)	cfap68 (ENSAMXG00000043230)	mia (ENSAMXG00000041018)	bicdl2 (ENSAMXG00000007341)	ENSAMXG00000007344	TOMM40L (ENSAMXG00000038474)	ufc1 (ENSAMXG00000037810)	gig2p (ENSAMXG00000025187)	fdxacb1 (ENSAMXG00000038372)	alg9 (ENSAMXG00000007362)	ppp2r1ba (ENSAMXG00000041116)
Mexicana tetra	MODERN SPECIES	633																ENSAMXG00000035431 #22
Mexicana tetra	MODERN SPECIES	465											aatf (ENSAMXG00000007276)	ENSAMXG00000042677	lhx1b (ENSAMXG00000007291)	ENSAMXG00000030596	mks1 (ENSAMXG00000030308)	ENSAMXG00000007315 #22
Red-bellied piranha	MODERN SPECIES	2	mogat3b (ENSPNAG00000013941)	znhit1 (ENSPNAG00000013955)	ENSPNAG00000013968	ENSPNAG00000003006	ENSPNAG00000014002	ENSPNAG00000014016	ENSPNAG00000014036	ENSPNAG00000003015	tbx2a (ENSPNAG00000003030)	acaca (ENSPNAG00000003122)	aatf (ENSPNAG00000003150)	lhx1b (ENSPNAG00000014533)	MRM1 (ENSPNAG00000014551)	mks1 (ENSPNAG00000014618)	ENSPNAG00000003204 #22	ENSPNAG00000003209 #22	FZD9 (ENSPNAG00000003211)	fkbp6 (ENSPNAG00000014701)	zgc:193711 (ENSPNAG00000014708)	hspb2 (ENSPNAG00000014715)	cryabb (ENSPNAG00000003224)	cfap68 (ENSPNAG00000006593)	mia (ENSPNAG00000014743)	bicdl2 (ENSPNAG00000014787)	ENSPNAG00000014794	TOMM40L (ENSPNAG00000014799)	ufc1 (ENSPNAG00000014824)	gig2p (ENSPNAG00000014831)	fdxacb1 (ENSPNAG00000003284)	alg9 (ENSPNAG00000014895)	ppp2r1ba (ENSPNAG00000003330)
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00390000007091.`b #22
Zebrafish	MODERN SPECIES	10	ENSDARG00000071015	s100a11 (ENSDARG00000093628)	s100u (ENSDARG00000071014)	s100s (ENSDARG00000036773)	pygo2 (ENSDARG00000036772)	cgnb (ENSDARG00000058690)	ENSDARG00000036767	ENSDARG00000058685	tuft1b (ENSDARG00000071010)	ubap2l (ENSDARG00000063219)	hax1 (ENSDARG00000036764)	aqp10b (ENSDARG00000058678)	znf687b (ENSDARG00000019299)	cks1b (ENSDARG00000007971)	ENSDARG00000071001 #22	ENSDARG00000092878 #22	nuggc.2 (ENSDARG00000091951) #22	nuggc.3 (ENSDARG00000058672) #22	si:dkey-266f7.4 (ENSDARG00000092728)	si:dkey-266f7.5 (ENSDARG00000094886)	ENSDARG00000086613	si:dkey-266f7.9 (ENSDARG00000075958)	ENSDARG00000014675	efna1a (ENSDARG00000030326)	s100a10a (ENSDARG00000037425)	dpm3 (ENSDARG00000058650)	trim46b (ENSDARG00000058649)	snx27a (ENSDARG00000033804)	chrna11 (ENSDARG00000037427)	rps27.1 (ENSDARG00000023298)	cers2a (ENSDARG00000013704)
Cyprinoidei	DUPLICATION
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00390000007091.ab.a.a #22
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	185	ENSGT00940000154172.b.c	ENSGT00940000171931	ENSGT00940000168838	ENSGT00940000154489.B.a.e	ENSGT00950000183065.B.f.a	ENSGT00390000003453.b.b.b	ENSGT00390000018324.b	ENSGT00390000018324.a	ENSGT00940000164368.A	ENSGT00940000156524.a.d	ENSGT00950000182971.B.b	ENSGT00390000010118.c.b.c	ENSGT00940000166681.b	ENSGT00940000159919.b.a.a	ENSGT00390000008892.b	ENSGT00390000007091.ab.a.a.a.a #22	ENSGT01060000249203.A	ENSGT00990000214102	ENSGT00390000010118.c.b.d	ENSGT00940000166681.a	ENSGT00940000159919.b.b	ENSGT00390000008892.a.b	ENSGT00940000158021.c.d	ENSGT00940000165795.g.b	ENSGT00950000183212.C.c.a.b	ENSGT00940000164921.b.e	ENSGT00950000182891.b.b.a	ENSGT01030000234515.a.b.a.a.e.b	ENSGT00940000154716.gc.b.b	ENSGT00950000183094.a.n.b	ENSGT00390000018360.b.b
Goldfish	MODERN SPECIES	10	prcc (ENSCARG00000016005)	mrpl9 (ENSCARG00000016012)	ENSCARG00000016034	LIX1L (ENSCARG00000016055)	s100a11 (ENSCARG00000016062)	s100u (ENSCARG00000016080)	s100s (ENSCARG00000016101)	pygo2 (ENSCARG00000016116)	cgnb (ENSCARG00000016134)	ENSCARG00000016197	ubap2l (ENSCARG00000016225)	hax1 (ENSCARG00000016365)	aqp10b (ENSCARG00000016382)	znf687b (ENSCARG00000016411)	cks1b (ENSCARG00000016433)	ENSCARG00000016452 #22	si:dkey-266f7.5 (ENSCARG00000016461)	ENSCARG00000016478	ENSCARG00000016495	efna1a (ENSCARG00000016502)	dpm3 (ENSCARG00000016515)	trim46b (ENSCARG00000016523)	s100a10a (ENSCARG00000016534)	snx27a (ENSCARG00000016563)	chrna11 (ENSCARG00000016660)	ENSCARG00000016663	cers2a (ENSCARG00000014414)	celf3a (ENSCARG00000014451)	rprd2a (ENSCARG00000014486)	ciarta (ENSCARG00000014494)	mrps21 (ENSCARG00000014502)
Cyprininae_a	ANCESTRAL SPECIES	1390																ENSGT00390000007091.ab.a.a.a.a #22	ENSGT01060000249203.A.b
Common carp reference	MODERN SPECIES	12	prcc (ENSCCRG00000010048)	mrpl9 (ENSCCRG00000010154)	ENSCCRG00000068558	ENSCCRG00000006090	s100a11 (ENSCCRG00000006085)	ENSCCRG00000006063	s100s (ENSCCRG00000054767)	ENSCCRG00000066405	cgnb (ENSCCRG00000079708)	ENSCCRG00000007940	ubap2l (ENSCCRG00000007789)	hax1 (ENSCCRG00000051803)	aqp10b (ENSCCRG00000051805)	znf687b (ENSCCRG00000053812)	cks1b (ENSCCRG00000051810)	ENSCCRG00000051815 #22	ENSCCRG00000081131	si:dkey-266f7.9 (ENSCCRG00000081891)	ENSCCRG00000077525	dpm3 (ENSCCRG00000065825)	trim46b (ENSCCRG00000035422)	s100a10a (ENSCCRG00000075828)	snx27a (ENSCCRG00000035444)	chrna11 (ENSCCRG00000056448)	ENSCCRG00000075527	cers2a (ENSCCRG00000024592)	ENSCCRG00000060057	celf3a (ENSCCRG00000024042)	rprd2a (ENSCCRG00000024017)	ciarta (ENSCCRG00000049041)	mrps21 (ENSCCRG00000067203)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000007091.ab.a.a.a.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00390000007091.ab.a.a.a.b #22
Common carp reference	MODERN SPECIES	31	mrps21 (ENSCCRG00000080584)	rprd2a (ENSCCRG00000068133)	celf3a (ENSCCRG00000076770)	cers2a (ENSCCRG00000072257)	ENSCCRG00000074680	chrna11 (ENSCCRG00000006710)	snx27a (ENSCCRG00000042297)	s100a10a (ENSCCRG00000069788)	trim46b (ENSCCRG00000042143)	dpm3 (ENSCCRG00000068446)	efna1a (ENSCCRG00000017809)	ENSCCRG00000059719	si:dkey-266f7.9 (ENSCCRG00000067905)	ENSCCRG00000066838	ENSCCRG00000066586	ENSCCRG00000009876 #22	cks1b (ENSCCRG00000063929)	znf687b (ENSCCRG00000007948)	hax1 (ENSCCRG00000007950)	ubap2l (ENSCCRG00000007971)	ENSCCRG00000067698	ENSCCRG00000069050	cgnb (ENSCCRG00000070443)	ENSCCRG00000072601	s100s (ENSCCRG00000055021)	ENSCCRG00000070538	s100a11 (ENSCCRG00000010018)	ENSCCRG00000066755	ENSCCRG00000010026	prcc (ENSCCRG00000072373)	mrpl24 (ENSCCRG00000010053)
Goldfish	MODERN SPECIES	38	mrps21 (ENSCARG00000021888)	ciarta (ENSCARG00000021868)	rprd2a (ENSCARG00000021836)	celf3a (ENSCARG00000021768)	cers2a (ENSCARG00000021724)	ENSCARG00000021695	chrna11 (ENSCARG00000021663)	snx27a (ENSCARG00000020384)	s100a10a (ENSCARG00000020334)	trim46b (ENSCARG00000020296)	dpm3 (ENSCARG00000020285)	efna1a (ENSCARG00000020272)	ENSCARG00000020265	ENSCARG00000020259	si:dkey-266f7.9 (ENSCARG00000020256)	ENSCARG00000020229 #22	cks1b (ENSCARG00000020192)	znf687b (ENSCARG00000020179)	hax1 (ENSCARG00000020136)	ubap2l (ENSCARG00000020007)	ENSCARG00000019974	cgnb (ENSCARG00000019963)	pygo2 (ENSCARG00000019960)	s100s (ENSCARG00000019955)	s100u (ENSCARG00000019953)	s100a11 (ENSCARG00000019949)	ENSCARG00000019933	LIX1L (ENSCARG00000019920)	prcc (ENSCARG00000019916)	mrpl24 (ENSCARG00000025520)	ENSCARG00000025505
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000007091.ab.a.a.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00390000007091.ab.a.a.b #22
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	1	ENSCCRG00000016332	ENSCCRG00000065254	ENSCCRG00000031730	ENSCCRG00000071005	ENSCCRG00000060476	ENSCCRG00000079908	ENSCCRG00000051663	ENSCCRG00000062591	ENSCCRG00000073714	ENSCCRG00000073315	ENSCCRG00000072964	ENSCCRG00000003496	ENSCCRG00000073599	ENSCCRG00000007808	ENSCCRG00000076563 #22	ENSCCRG00000053978 #22	ENSCCRG00000071518	ENSCCRG00000049923	ENSCCRG00000064756	ENSCCRG00000070891	ENSCCRG00000062826	ENSCCRG00000059524	ENSCCRG00000071626	ENSCCRG00000065836	ENSCCRG00000059969	ENSCCRG00000079070	ENSCCRG00000054366	ENSCCRG00000071958	ENSCCRG00000078583	ENSCCRG00000080701	ENSCCRG00000056648
Common carp reference	MODERN SPECIES	1	ENSCCRG00000080701	ENSCCRG00000078583	ENSCCRG00000071958	ENSCCRG00000054366	ENSCCRG00000079070	ENSCCRG00000059969	ENSCCRG00000065836	ENSCCRG00000071626	ENSCCRG00000059524	ENSCCRG00000062826	ENSCCRG00000070891	ENSCCRG00000064756	ENSCCRG00000049923	ENSCCRG00000071518	ENSCCRG00000053978 #22	ENSCCRG00000076563 #22	ENSCCRG00000007808	ENSCCRG00000073599	ENSCCRG00000003496	ENSCCRG00000072964	ENSCCRG00000073315	ENSCCRG00000073714	ENSCCRG00000062591	ENSCCRG00000051663	ENSCCRG00000079908	ENSCCRG00000060476	ENSCCRG00000071005	ENSCCRG00000031730	ENSCCRG00000065254	ENSCCRG00000016332	ENSCCRG00000037382
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00390000007091.ab.a.b #22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000007091.ab.a.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00390000007091.ab.a.b #22
Common carp reference	MODERN SPECIES	1	ENSCCRG00000059904	ENSCCRG00000064897	ENSCCRG00000041929	ENSCCRG00000057877	ENSCCRG00000081205	ENSCCRG00000082565	ENSCCRG00000059274	iqck (ENSCCRG00000062253)	ENSCCRG00000059676	proza (ENSCCRG00000016769)	ENSCCRG00000016765	ENSCCRG00000063527	ENSCCRG00000032573	ENSCCRG00000064768	ENSCCRG00000053680	ENSCCRG00000022605 #22	ENSCCRG00000058448	ENSCCRG00000065454	ENSCCRG00000054367	ENSCCRG00000050580	ENSCCRG00000080616	ENSCCRG00000079268	ENSCCRG00000059885	ENSCCRG00000064099	ENSCCRG00000054569	ENSCCRG00000070488	ENSCCRG00000076320	ENSCCRG00000079368	ENSCCRG00000069525	ENSCCRG00000062016	ENSCCRG00000066096
Goldfish	MODERN SPECIES	20	ENSCARG00000021094	iqck (ENSCARG00000021082)	gprc5ba (ENSCARG00000021071)	proza (ENSCARG00000021026)	ENSCARG00000021017	ENSCARG00000021013	ENSCARG00000021011	ENSCARG00000021007	si:ch211-165i18.2 (ENSCARG00000020987)	PTCHD3 (ENSCARG00000020985)	fasn2 (ENSCARG00000020978)	ENSCARG00000020974	ENSCARG00000020969	ENSCARG00000020966	ENSCARG00000020961	nuggc.3 (ENSCARG00000020949) #22	ENSCARG00000020937	ENSCARG00000020934	ENSCARG00000020921	ENSCARG00000020919	ENSCARG00000020914	ENSCARG00000020861	dnal4a (ENSCARG00000020846)	ENSCARG00000020843	CBX6 (ENSCARG00000020839)	ENSCARG00000020833	pvalb6 (ENSCARG00000020823)	csf2rb (ENSCARG00000020815)	ENSCARG00000020800	tmem150b (ENSCARG00000020774)	adsl (ENSCARG00000019303)
Zebrafish	DUPLICATION
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	10	s100a11 (ENSDARG00000093628)	s100u (ENSDARG00000071014)	s100s (ENSDARG00000036773)	pygo2 (ENSDARG00000036772)	cgnb (ENSDARG00000058690)	ENSDARG00000036767	ENSDARG00000058685	tuft1b (ENSDARG00000071010)	ubap2l (ENSDARG00000063219)	hax1 (ENSDARG00000036764)	aqp10b (ENSDARG00000058678)	znf687b (ENSDARG00000019299)	cks1b (ENSDARG00000007971)	ENSDARG00000071001 #22	ENSDARG00000092878 #22	nuggc.2 (ENSDARG00000091951) #22	nuggc.3 (ENSDARG00000058672) #22	si:dkey-266f7.4 (ENSDARG00000092728)	si:dkey-266f7.5 (ENSDARG00000094886)	ENSDARG00000086613	si:dkey-266f7.9 (ENSDARG00000075958)	ENSDARG00000014675	efna1a (ENSDARG00000030326)	s100a10a (ENSDARG00000037425)	dpm3 (ENSDARG00000058650)	trim46b (ENSDARG00000058649)	snx27a (ENSDARG00000033804)	chrna11 (ENSDARG00000037427)	rps27.1 (ENSDARG00000023298)	cers2a (ENSDARG00000013704)	ENSDARG00000103224
Zebrafish	MODERN SPECIES	10	s100u (ENSDARG00000071014)	s100s (ENSDARG00000036773)	pygo2 (ENSDARG00000036772)	cgnb (ENSDARG00000058690)	ENSDARG00000036767	ENSDARG00000058685	tuft1b (ENSDARG00000071010)	ubap2l (ENSDARG00000063219)	hax1 (ENSDARG00000036764)	aqp10b (ENSDARG00000058678)	znf687b (ENSDARG00000019299)	cks1b (ENSDARG00000007971)	ENSDARG00000071001 #22	ENSDARG00000092878 #22	nuggc.2 (ENSDARG00000091951) #22	nuggc.3 (ENSDARG00000058672) #22	si:dkey-266f7.4 (ENSDARG00000092728)	si:dkey-266f7.5 (ENSDARG00000094886)	ENSDARG00000086613	si:dkey-266f7.9 (ENSDARG00000075958)	ENSDARG00000014675	efna1a (ENSDARG00000030326)	s100a10a (ENSDARG00000037425)	dpm3 (ENSDARG00000058650)	trim46b (ENSDARG00000058649)	snx27a (ENSDARG00000033804)	chrna11 (ENSDARG00000037427)	rps27.1 (ENSDARG00000023298)	cers2a (ENSDARG00000013704)	ENSDARG00000103224	celf3a (ENSDARG00000034668)
Zebrafish	MODERN SPECIES	10	lix1l (ENSDARG00000063244)	ENSDARG00000071015	s100a11 (ENSDARG00000093628)	s100u (ENSDARG00000071014)	s100s (ENSDARG00000036773)	pygo2 (ENSDARG00000036772)	cgnb (ENSDARG00000058690)	ENSDARG00000036767	ENSDARG00000058685	tuft1b (ENSDARG00000071010)	ubap2l (ENSDARG00000063219)	hax1 (ENSDARG00000036764)	aqp10b (ENSDARG00000058678)	znf687b (ENSDARG00000019299)	cks1b (ENSDARG00000007971)	ENSDARG00000071001 #22	ENSDARG00000092878 #22	nuggc.2 (ENSDARG00000091951) #22	nuggc.3 (ENSDARG00000058672) #22	si:dkey-266f7.4 (ENSDARG00000092728)	si:dkey-266f7.5 (ENSDARG00000094886)	ENSDARG00000086613	si:dkey-266f7.9 (ENSDARG00000075958)	ENSDARG00000014675	efna1a (ENSDARG00000030326)	s100a10a (ENSDARG00000037425)	dpm3 (ENSDARG00000058650)	trim46b (ENSDARG00000058649)	snx27a (ENSDARG00000033804)	chrna11 (ENSDARG00000037427)	rps27.1 (ENSDARG00000023298)
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00390000007091.ab.b #22
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000007091.ab.b.a #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00390000007091.ab.b.a #22
Common carp reference	MODERN SPECIES	35									ENSCCRG00000039842	ENSCCRG00000059077	ENSCCRG00000064149	ENSCCRG00000005061	ENSCCRG00000059159	ENSCCRG00000048255	fam199x (ENSCCRG00000053108)	ENSCCRG00000048183 #22	ENSCCRG00000078531	ENSCCRG00000055165	ENSCCRG00000047483	ENSCCRG00000082145	ENSCCRG00000037366	st3gal5 (ENSCCRG00000040488)	rell2 (ENSCCRG00000006364)	ENSCCRG00000006350	sh3bgrl (ENSCCRG00000059539)	tbx22 (ENSCCRG00000032958)	ENSCCRG00000073120	msnb (ENSCCRG00000012604)	asb12b (ENSCCRG00000077524)	ENSCCRG00000012133	ENSCCRG00000075615
Goldfish	MODERN SPECIES	5	irg1l (ENSCARG00000008757)	glod5 (ENSCARG00000008747)	RLIM (ENSCARG00000008741)	NEXMIF (ENSCARG00000008738)	abcb7 (ENSCARG00000007756)	ENSCARG00000007706	cysltr1 (ENSCARG00000007696)	ENSCARG00000007692	ENSCARG00000007690	LPAR4 (ENSCARG00000007684)	p2ry10 (ENSCARG00000007676)	ENSCARG00000007671	ENSCARG00000007664	commd5 (ENSCARG00000007658)	fam199x (ENSCARG00000007625)	ENSCARG00000007581 #22	ENSCARG00000007558	ENSCARG00000007553	il1rapl2 (ENSCARG00000007510)	ENSCARG00000007417	ENSCARG00000007399	ENSCARG00000007391	slbp (ENSCARG00000007385)	ENSCARG00000007378	ENSCARG00000007371	nkx1.2lb (ENSCARG00000007362)	spink2.1 (ENSCARG00000007354)	ENSCARG00000007348	ENSCARG00000007343	neurl1b (ENSCARG00000007334)	dusp1 (ENSCARG00000007325)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000007091.ab.b.b #22
Goldfish	MODERN SPECIES	22	ENSCARG00000030820	ENSCARG00000030873	cth1 (ENSCARG00000030880)	mta2 (ENSCARG00000030914)	EML3 (ENSCARG00000031695)	ecsit (ENSCARG00000035833)	rtn3 (ENSCARG00000035850)	men1 (ENSCARG00000035872)	tnfsf18 (ENSCARG00000035897)	ENSCARG00000035903	tmed1a (ENSCARG00000035920)	dnm2a (ENSCARG00000036063)	qtrt1 (ENSCARG00000036241)	ENSCARG00000036273	ENSCARG00000036338	ENSCARG00000036352 #22	actb2 (ENSCARG00000036365)	ENSCARG00000036453	slc29a4a (ENSCARG00000036666)	atp5mf (ENSCARG00000036687)	cpsf4 (ENSCARG00000036711)	bud31 (ENSCARG00000036766)	pdap1b (ENSCARG00000036792)	shmt1 (ENSCARG00000036814)	smcr8a (ENSCARG00000036968)	flii (ENSCARG00000037021)	znf598 (ENSCARG00000038905)	syngr3a (ENSCARG00000038959)	gfer (ENSCARG00000038975)	drg2 (ENSCARG00000039005)	notch3 (ENSCARG00000039235)