Myomorpha	ANCESTRAL SPECIES	29	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Lesser Egyptian jerboa	MODERN SPECIES	125										ENSJJAG00000010971 #16	ENSJJAG00000003893 #17	Syt4 (ENSJJAG00000022564) #18	Rit2 (ENSJJAG00000021302) #19	ENSJJAG00000018157 #20	Pik3c3 (ENSJJAG00000000136) #21	Nuggc (ENSJJAG00000020439) #22	Scara5 (ENSJJAG00000015781) #23	ENSJJAG00000013978 #24	Esco2 (ENSJJAG00000016831) #25	ENSJJAG00000016351 #26	Scara3 (ENSJJAG00000015535) #27	Clu (ENSJJAG00000011133) #28	Gulo (ENSJJAG00000008997) #29	Adam2 (ENSJJAG00000021729) #30	Ephx2 (ENSJJAG00000021412) #31	Chrna2 (ENSJJAG00000018111) #32	Ptk2b (ENSJJAG00000013115) #33	Trim35 (ENSJJAG00000011832) #34	ENSJJAG00000011170 #35	Stmn4 (ENSJJAG00000010283) #36	Adra1a (ENSJJAG00000008597) #37
Muroidea	ANCESTRAL SPECIES	26	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Cricetinae	ANCESTRAL SPECIES	18	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Chinese hamster chok1gshd	MODERN SPECIES	3	4930578I06Rik (ENSCGRG00001002855)	Rp1l1 (ENSCGRG00001000883)	Prss55 (ENSCGRG00001012725)	Prss51 (ENSCGRG00001017289)	Prss52 (ENSCGRG00001022178)	Msra (ENSCGRG00001014400)	Kif13b (ENSCGRG00001002755)	Hmbox1 (ENSCGRG00001006124)	Ints9 (ENSCGRG00001024549)	Extl3 (ENSCGRG00001009621)	Fzd3 (ENSCGRG00001017329)	Fbxo16 (ENSCGRG00001016357)	Zfp395 (ENSCGRG00001018152)	Pnoc (ENSCGRG00001020999)	Elp3 (ENSCGRG00001002047)	Nuggc (ENSCGRG00001024841) #22	Scara5 (ENSCGRG00001004427) #23	Pbk (ENSCGRG00001007773) #24	Esco2 (ENSCGRG00001016894) #25	Ccdc25 (ENSCGRG00001014249) #26	Scara3 (ENSCGRG00001018699) #27	Clu (ENSCGRG00001021841) #28	Gulo (ENSCGRG00001019987) #29	Adam2 (ENSCGRG00001012300) #30	Ephx2 (ENSCGRG00001003555) #31	ENSCGRG00001003198	Chrna2 (ENSCGRG00001025060) #32	Ptk2b (ENSCGRG00001013042) #33	Trim35 (ENSCGRG00001019610) #34	ENSCGRG00001009280	Stmn4 (ENSCGRG00001008937) #36
Golden Hamster	MODERN SPECIES	670	4930578I06Rik (ENSMAUG00000015281)	Rp1l1 (ENSMAUG00000006210)	Prss55 (ENSMAUG00000003349)	Prss51 (ENSMAUG00000019793)	Prss52 (ENSMAUG00000020307)	Msra (ENSMAUG00000002110)	Kif13b (ENSMAUG00000016652)	Hmbox1 (ENSMAUG00000017893)	Ints9 (ENSMAUG00000016286)	Extl3 (ENSMAUG00000013025)	Fzd3 (ENSMAUG00000020808)	Fbxo16 (ENSMAUG00000014801)	ENSMAUG00000019639	Pnoc (ENSMAUG00000005940)	Elp3 (ENSMAUG00000013672)	Nuggc (ENSMAUG00000014486) #22	Scara5 (ENSMAUG00000012698) #23	Pbk (ENSMAUG00000000786) #24	Esco2 (ENSMAUG00000018840) #25	Ccdc25 (ENSMAUG00000018478) #26	Scara3 (ENSMAUG00000008370) #27	Clu (ENSMAUG00000001027) #28	Gulo (ENSMAUG00000013257) #29	Adam2 (ENSMAUG00000021964) #30	Ephx2 (ENSMAUG00000010745) #31	Chrna2 (ENSMAUG00000009044) #32	Ptk2b (ENSMAUG00000018808) #33	Trim35 (ENSMAUG00000010808) #34	Stmn4 (ENSMAUG00000012567) #36	Adra1a (ENSMAUG00000019248) #37	Dpysl2 (ENSMAUG00000006007)
Murinae	ANCESTRAL SPECIES	16	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Mus	ANCESTRAL SPECIES	8	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT01030000234551.k.d.a.c	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT00860000136174
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT00860000136174
Mouse	MODERN SPECIES	5	4930578I06Rik (ENSMUSG00000021961)	Rp1l1 (ENSMUSG00000046049)	Prss55 (ENSMUSG00000034623)	Prss51 (ENSMUSG00000052099)	Prss52 (ENSMUSG00000021966)	Msra (ENSMUSG00000054733)	Kif13b (ENSMUSG00000060012)	Hmbox1 (ENSMUSG00000021972)	Ints9 (ENSMUSG00000021975)	Extl3 (ENSMUSG00000021978)	Fzd3 (ENSMUSG00000007989)	Fbxo16 (ENSMUSG00000034532)	Zfp395 (ENSMUSG00000034522)	Pnoc (ENSMUSG00000045731)	Elp3 (ENSMUSG00000022031)	Nuggc (ENSMUSG00000061356) #22	Scara5 (ENSMUSG00000022032) #23	Pbk (ENSMUSG00000022033) #24	Esco2 (ENSMUSG00000022034) #25	Ccdc25 (ENSMUSG00000022035) #26	Scara3 (ENSMUSG00000034463) #27	Clu (ENSMUSG00000022037) #28	Gulo (ENSMUSG00000034450) #29	Adam2 (ENSMUSG00000022039) #30	Ephx2 (ENSMUSG00000022040) #31	Chrna2 (ENSMUSG00000022041) #32	Ptk2b (ENSMUSG00000059456) #33	Trim35 (ENSMUSG00000022043) #34	Stmn4 (ENSMUSG00000022044) #36	Adra1a (ENSMUSG00000045875) #37	Dpysl2 (ENSMUSG00000022048)
Ryukyu mouse	MODERN SPECIES	5	4930578I06Rik (MGP_CAROLIEiJ_G0019411)	Rp1l1 (MGP_CAROLIEiJ_G0019412)	Prss55 (MGP_CAROLIEiJ_G0019413)	MGP_CAROLIEiJ_G0019414	Prss52 (MGP_CAROLIEiJ_G0019415)	Msra (MGP_CAROLIEiJ_G0019416)	Kif13b (MGP_CAROLIEiJ_G0019417)	Hmbox1 (MGP_CAROLIEiJ_G0019418)	Ints9 (MGP_CAROLIEiJ_G0019419)	Extl3 (MGP_CAROLIEiJ_G0019420)	Fzd3 (MGP_CAROLIEiJ_G0019421)	Fbxo16 (MGP_CAROLIEiJ_G0019422)	Zfp395 (MGP_CAROLIEiJ_G0019423)	Pnoc (MGP_CAROLIEiJ_G0019424)	Elp3 (MGP_CAROLIEiJ_G0019425)	Nuggc (MGP_CAROLIEiJ_G0019426) #22	Scara5 (MGP_CAROLIEiJ_G0019427) #23	Pbk (MGP_CAROLIEiJ_G0019428) #24	Esco2 (MGP_CAROLIEiJ_G0019429) #25	Ccdc25 (MGP_CAROLIEiJ_G0019430) #26	Scara3 (MGP_CAROLIEiJ_G0019431) #27	Clu (MGP_CAROLIEiJ_G0019432) #28	Gulo (MGP_CAROLIEiJ_G0019433) #29	Adam2 (MGP_CAROLIEiJ_G0019434) #30	Ephx2 (MGP_CAROLIEiJ_G0019435) #31	Chrna2 (MGP_CAROLIEiJ_G0019436) #32	Ptk2b (MGP_CAROLIEiJ_G0019437) #33	Trim35 (MGP_CAROLIEiJ_G0019438) #34	Stmn4 (MGP_CAROLIEiJ_G0019439) #36	Adra1a (MGP_CAROLIEiJ_G0019440) #37	MGP_CAROLIEiJ_G0019441
Upper Galilee mountains blind mole rat	MODERN SPECIES	589	4930578I06Rik (ENSNGAG00000009966)	Prss55 (ENSNGAG00000011795)	ENSNGAG00000021775	Prss52 (ENSNGAG00000023654)	Msra (ENSNGAG00000017348)	ENSNGAG00000010801	Kif13b (ENSNGAG00000018729)	Hmbox1 (ENSNGAG00000022905)	Ints9 (ENSNGAG00000024198)	Extl3 (ENSNGAG00000020413)	Fzd3 (ENSNGAG00000018670)	Fbxo16 (ENSNGAG00000012031)	Zfp395 (ENSNGAG00000004006)	Pnoc (ENSNGAG00000013397)	Elp3 (ENSNGAG00000004373)	Nuggc (ENSNGAG00000022052) #22	Scara5 (ENSNGAG00000006829) #23	Pbk (ENSNGAG00000023879) #24	Esco2 (ENSNGAG00000013208) #25	Ccdc25 (ENSNGAG00000018920) #26	Scara3 (ENSNGAG00000023203) #27	Clu (ENSNGAG00000013029) #28	Gulo (ENSNGAG00000024191) #29	Adam2 (ENSNGAG00000005586) #30	Ephx2 (ENSNGAG00000022968) #31	Chrna2 (ENSNGAG00000023099) #32	Ptk2b (ENSNGAG00000023988) #33	Trim35 (ENSNGAG00000023890) #34	Stmn4 (ENSNGAG00000019172) #36