Glires	ANCESTRAL SPECIES	26	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00950000185466	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b
Rodentia	ANCESTRAL SPECIES	21	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00950000185466	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37
Rodentia_B	ANCESTRAL SPECIES	24	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Myomorpha	ANCESTRAL SPECIES	29	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Lesser Egyptian jerboa	MODERN SPECIES	125										ENSJJAG00000010971 #16	ENSJJAG00000003893 #17	Syt4 (ENSJJAG00000022564) #18	Rit2 (ENSJJAG00000021302) #19	ENSJJAG00000018157 #20	Pik3c3 (ENSJJAG00000000136) #21	Nuggc (ENSJJAG00000020439) #22	Scara5 (ENSJJAG00000015781) #23	ENSJJAG00000013978 #24	Esco2 (ENSJJAG00000016831) #25	ENSJJAG00000016351 #26	Scara3 (ENSJJAG00000015535) #27	Clu (ENSJJAG00000011133) #28	Gulo (ENSJJAG00000008997) #29	Adam2 (ENSJJAG00000021729) #30	Ephx2 (ENSJJAG00000021412) #31	Chrna2 (ENSJJAG00000018111) #32	Ptk2b (ENSJJAG00000013115) #33	Trim35 (ENSJJAG00000011832) #34	ENSJJAG00000011170 #35	Stmn4 (ENSJJAG00000010283) #36	Adra1a (ENSJJAG00000008597) #37
Muroidea	ANCESTRAL SPECIES	26	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Cricetinae	ANCESTRAL SPECIES	18	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Chinese hamster chok1gshd	MODERN SPECIES	3	4930578I06Rik (ENSCGRG00001002855)	Rp1l1 (ENSCGRG00001000883)	Prss55 (ENSCGRG00001012725)	Prss51 (ENSCGRG00001017289)	Prss52 (ENSCGRG00001022178)	Msra (ENSCGRG00001014400)	Kif13b (ENSCGRG00001002755)	Hmbox1 (ENSCGRG00001006124)	Ints9 (ENSCGRG00001024549)	Extl3 (ENSCGRG00001009621)	Fzd3 (ENSCGRG00001017329)	Fbxo16 (ENSCGRG00001016357)	Zfp395 (ENSCGRG00001018152)	Pnoc (ENSCGRG00001020999)	Elp3 (ENSCGRG00001002047)	Nuggc (ENSCGRG00001024841) #22	Scara5 (ENSCGRG00001004427) #23	Pbk (ENSCGRG00001007773) #24	Esco2 (ENSCGRG00001016894) #25	Ccdc25 (ENSCGRG00001014249) #26	Scara3 (ENSCGRG00001018699) #27	Clu (ENSCGRG00001021841) #28	Gulo (ENSCGRG00001019987) #29	Adam2 (ENSCGRG00001012300) #30	Ephx2 (ENSCGRG00001003555) #31	ENSCGRG00001003198	Chrna2 (ENSCGRG00001025060) #32	Ptk2b (ENSCGRG00001013042) #33	Trim35 (ENSCGRG00001019610) #34	ENSCGRG00001009280	Stmn4 (ENSCGRG00001008937) #36
Golden Hamster	MODERN SPECIES	670	4930578I06Rik (ENSMAUG00000015281)	Rp1l1 (ENSMAUG00000006210)	Prss55 (ENSMAUG00000003349)	Prss51 (ENSMAUG00000019793)	Prss52 (ENSMAUG00000020307)	Msra (ENSMAUG00000002110)	Kif13b (ENSMAUG00000016652)	Hmbox1 (ENSMAUG00000017893)	Ints9 (ENSMAUG00000016286)	Extl3 (ENSMAUG00000013025)	Fzd3 (ENSMAUG00000020808)	Fbxo16 (ENSMAUG00000014801)	ENSMAUG00000019639	Pnoc (ENSMAUG00000005940)	Elp3 (ENSMAUG00000013672)	Nuggc (ENSMAUG00000014486) #22	Scara5 (ENSMAUG00000012698) #23	Pbk (ENSMAUG00000000786) #24	Esco2 (ENSMAUG00000018840) #25	Ccdc25 (ENSMAUG00000018478) #26	Scara3 (ENSMAUG00000008370) #27	Clu (ENSMAUG00000001027) #28	Gulo (ENSMAUG00000013257) #29	Adam2 (ENSMAUG00000021964) #30	Ephx2 (ENSMAUG00000010745) #31	Chrna2 (ENSMAUG00000009044) #32	Ptk2b (ENSMAUG00000018808) #33	Trim35 (ENSMAUG00000010808) #34	Stmn4 (ENSMAUG00000012567) #36	Adra1a (ENSMAUG00000019248) #37	Dpysl2 (ENSMAUG00000006007)
Murinae	ANCESTRAL SPECIES	16	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Mus	ANCESTRAL SPECIES	8	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT01030000234551.k.d.a.c	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT00860000136174
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT00860000136174
Mouse	MODERN SPECIES	5	4930578I06Rik (ENSMUSG00000021961)	Rp1l1 (ENSMUSG00000046049)	Prss55 (ENSMUSG00000034623)	Prss51 (ENSMUSG00000052099)	Prss52 (ENSMUSG00000021966)	Msra (ENSMUSG00000054733)	Kif13b (ENSMUSG00000060012)	Hmbox1 (ENSMUSG00000021972)	Ints9 (ENSMUSG00000021975)	Extl3 (ENSMUSG00000021978)	Fzd3 (ENSMUSG00000007989)	Fbxo16 (ENSMUSG00000034532)	Zfp395 (ENSMUSG00000034522)	Pnoc (ENSMUSG00000045731)	Elp3 (ENSMUSG00000022031)	Nuggc (ENSMUSG00000061356) #22	Scara5 (ENSMUSG00000022032) #23	Pbk (ENSMUSG00000022033) #24	Esco2 (ENSMUSG00000022034) #25	Ccdc25 (ENSMUSG00000022035) #26	Scara3 (ENSMUSG00000034463) #27	Clu (ENSMUSG00000022037) #28	Gulo (ENSMUSG00000034450) #29	Adam2 (ENSMUSG00000022039) #30	Ephx2 (ENSMUSG00000022040) #31	Chrna2 (ENSMUSG00000022041) #32	Ptk2b (ENSMUSG00000059456) #33	Trim35 (ENSMUSG00000022043) #34	Stmn4 (ENSMUSG00000022044) #36	Adra1a (ENSMUSG00000045875) #37	Dpysl2 (ENSMUSG00000022048)
Ryukyu mouse	MODERN SPECIES	5	4930578I06Rik (MGP_CAROLIEiJ_G0019411)	Rp1l1 (MGP_CAROLIEiJ_G0019412)	Prss55 (MGP_CAROLIEiJ_G0019413)	MGP_CAROLIEiJ_G0019414	Prss52 (MGP_CAROLIEiJ_G0019415)	Msra (MGP_CAROLIEiJ_G0019416)	Kif13b (MGP_CAROLIEiJ_G0019417)	Hmbox1 (MGP_CAROLIEiJ_G0019418)	Ints9 (MGP_CAROLIEiJ_G0019419)	Extl3 (MGP_CAROLIEiJ_G0019420)	Fzd3 (MGP_CAROLIEiJ_G0019421)	Fbxo16 (MGP_CAROLIEiJ_G0019422)	Zfp395 (MGP_CAROLIEiJ_G0019423)	Pnoc (MGP_CAROLIEiJ_G0019424)	Elp3 (MGP_CAROLIEiJ_G0019425)	Nuggc (MGP_CAROLIEiJ_G0019426) #22	Scara5 (MGP_CAROLIEiJ_G0019427) #23	Pbk (MGP_CAROLIEiJ_G0019428) #24	Esco2 (MGP_CAROLIEiJ_G0019429) #25	Ccdc25 (MGP_CAROLIEiJ_G0019430) #26	Scara3 (MGP_CAROLIEiJ_G0019431) #27	Clu (MGP_CAROLIEiJ_G0019432) #28	Gulo (MGP_CAROLIEiJ_G0019433) #29	Adam2 (MGP_CAROLIEiJ_G0019434) #30	Ephx2 (MGP_CAROLIEiJ_G0019435) #31	Chrna2 (MGP_CAROLIEiJ_G0019436) #32	Ptk2b (MGP_CAROLIEiJ_G0019437) #33	Trim35 (MGP_CAROLIEiJ_G0019438) #34	Stmn4 (MGP_CAROLIEiJ_G0019439) #36	Adra1a (MGP_CAROLIEiJ_G0019440) #37	MGP_CAROLIEiJ_G0019441
Upper Galilee mountains blind mole rat	MODERN SPECIES	589	4930578I06Rik (ENSNGAG00000009966)	Prss55 (ENSNGAG00000011795)	ENSNGAG00000021775	Prss52 (ENSNGAG00000023654)	Msra (ENSNGAG00000017348)	ENSNGAG00000010801	Kif13b (ENSNGAG00000018729)	Hmbox1 (ENSNGAG00000022905)	Ints9 (ENSNGAG00000024198)	Extl3 (ENSNGAG00000020413)	Fzd3 (ENSNGAG00000018670)	Fbxo16 (ENSNGAG00000012031)	Zfp395 (ENSNGAG00000004006)	Pnoc (ENSNGAG00000013397)	Elp3 (ENSNGAG00000004373)	Nuggc (ENSNGAG00000022052) #22	Scara5 (ENSNGAG00000006829) #23	Pbk (ENSNGAG00000023879) #24	Esco2 (ENSNGAG00000013208) #25	Ccdc25 (ENSNGAG00000018920) #26	Scara3 (ENSNGAG00000023203) #27	Clu (ENSNGAG00000013029) #28	Gulo (ENSNGAG00000024191) #29	Adam2 (ENSNGAG00000005586) #30	Ephx2 (ENSNGAG00000022968) #31	Chrna2 (ENSNGAG00000023099) #32	Ptk2b (ENSNGAG00000023988) #33	Trim35 (ENSNGAG00000023890) #34	Stmn4 (ENSNGAG00000019172) #36
Kangaroo rat	MODERN SPECIES	393	Pinx1 (ENSDORG00000004065)	4930578I06Rik (ENSDORG00000011613)	Prss55 (ENSDORG00000000666)	ENSDORG00000028826	ENSDORG00000030167	Msra (ENSDORG00000004084)	Kif13b (ENSDORG00000015972)	Hmbox1 (ENSDORG00000015971)	Ints9 (ENSDORG00000008604)	Extl3 (ENSDORG00000011937)	Fzd3 (ENSDORG00000026500)	Fbxo16 (ENSDORG00000009764)	Zfp395 (ENSDORG00000005052)	Pnoc (ENSDORG00000005053)	Elp3 (ENSDORG00000012451)	Nuggc (ENSDORG00000012444) #22	Scara5 (ENSDORG00000010511) #23	Esco2 (ENSDORG00000014897) #25	Ccdc25 (ENSDORG00000006595) #26	Scara3 (ENSDORG00000015368) #27	Clu (ENSDORG00000010249) #28	Gulo (ENSDORG00000024023) #29	Adam2 (ENSDORG00000002055) #30	Ephx2 (ENSDORG00000010204) #31	Chrna2 (ENSDORG00000010203) #32	Ptk2b (ENSDORG00000010200) #33	Trim35 (ENSDORG00000010264) #34	Stmn4 (ENSDORG00000010266) #36
Rodentia_A	ANCESTRAL SPECIES	21	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00950000185466	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37
Sciuridae	ANCESTRAL SPECIES	29	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00950000185466	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37
Marmotini	ANCESTRAL SPECIES	30	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.c #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Marmotini_b	ANCESTRAL SPECIES	138	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.c #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36
Squirrel	MODERN SPECIES	275	ENSSTOG00000021185	PRSS55 (ENSSTOG00000011728)	ENSSTOG00000034166	ENSSTOG00000025120	MSRA (ENSSTOG00000024714)	ENSSTOG00000033697	KIF13B (ENSSTOG00000004778)	HMBOX1 (ENSSTOG00000004762)	INTS9 (ENSSTOG00000011703)	EXTL3 (ENSSTOG00000019391)	FZD3 (ENSSTOG00000011064)	FBXO16 (ENSSTOG00000029192)	ZNF395 (ENSSTOG00000001396)	PNOC (ENSSTOG00000001392)	ELP3 (ENSSTOG00000000508)	NUGGC (ENSSTOG00000000498) #22	SCARA5 (ENSSTOG00000000496) #23	PBK (ENSSTOG00000028798) #24	ESCO2 (ENSSTOG00000000493) #25	CCDC25 (ENSSTOG00000000490) #26	SCARA3 (ENSSTOG00000023922) #27	CLU (ENSSTOG00000026703) #28	ENSSTOG00000026329 #29	ADAM2 (ENSSTOG00000011994) #30	ENSSTOG00000004408	EPHX2 (ENSSTOG00000010872) #31	CHRNA2 (ENSSTOG00000016060) #32	PTK2B (ENSSTOG00000009205) #33	TRIM35 (ENSSTOG00000020486) #34	STMN4 (ENSSTOG00000007200) #36
Arctic ground squirrel	MODERN SPECIES	203	ENSUPAG00010003314	ENSUPAG00010003330	PRSS51 (ENSUPAG00010003337)	ENSUPAG00010003355	MSRA (ENSUPAG00010003365)	KIF13B (ENSUPAG00010003395)	HMBOX1 (ENSUPAG00010003528)	INTS9 (ENSUPAG00010003602)	EXTL3 (ENSUPAG00010003630)	FZD3 (ENSUPAG00010003648)	FBXO16 (ENSUPAG00010003660)	ENSUPAG00010003704	ZNF395 (ENSUPAG00010003708)	PNOC (ENSUPAG00010003731)	ELP3 (ENSUPAG00010003737)	NUGGC (ENSUPAG00010003759) #22	SCARA5 (ENSUPAG00010003795) #23	PBK (ENSUPAG00010003803) #24	ESCO2 (ENSUPAG00010003820) #25	CCDC25 (ENSUPAG00010003839) #26	SCARA3 (ENSUPAG00010003867) #27	CLU (ENSUPAG00010003882) #28	ENSUPAG00010003895 #29	ADAM2 (ENSUPAG00010003911) #30	EPHX2 (ENSUPAG00010003940) #31	ENSUPAG00010004106 #33	TRIM35 (ENSUPAG00010004126) #34	STMN4 (ENSUPAG00010004143) #36
Alpin marmot	MODERN SPECIES	61	ENSMMMG00000012429	PRSS51 (ENSMMMG00000012438)	ENSMMMG00000012451	MSRA (ENSMMMG00000012458)	ENSMMMG00000012470	KIF13B (ENSMMMG00000012474)	HMBOX1 (ENSMMMG00000012513)	INTS9 (ENSMMMG00000012520)	EXTL3 (ENSMMMG00000012868)	FZD3 (ENSMMMG00000012893)	ENSMMMG00000012897	FBXO16 (ENSMMMG00000012903)	ZNF395 (ENSMMMG00000012939)	PNOC (ENSMMMG00000012949)	ELP3 (ENSMMMG00000012964)	NUGGC (ENSMMMG00000012992) #22	SCARA5 (ENSMMMG00000013022) #23	ENSMMMG00000013030 #24	ESCO2 (ENSMMMG00000013045) #25	CCDC25 (ENSMMMG00000013061) #26	SCARA3 (ENSMMMG00000013090) #27	CLU (ENSMMMG00000013091) #28	ENSMMMG00000013102 #29	ADAM2 (ENSMMMG00000013126) #30	EPHX2 (ENSMMMG00000013154) #31	ENSMMMG00000013222 #32	PTK2B (ENSMMMG00000013250) #33	ENSMMMG00000013471 #34	STMN4 (ENSMMMG00000013482) #36	ADRA1A (ENSMMMG00000013560) #37	DPYSL2 (ENSMMMG00000013573)
Eurasian red squirrel	MODERN SPECIES	14	C8orf74 (ENSSVLG00005006760)	ENSSVLG00005006804	PRSS55 (ENSSVLG00005000180)	PRSS51 (ENSSVLG00005000208)	ENSSVLG00005000266	MSRA (ENSSVLG00005000328)	KIF13B (ENSSVLG00005000912)	HMBOX1 (ENSSVLG00005001517)	INTS9 (ENSSVLG00005001565)	EXTL3 (ENSSVLG00005001634)	FZD3 (ENSSVLG00005001660)	FBXO16 (ENSSVLG00005001709)	ZNF395 (ENSSVLG00005001763)	PNOC (ENSSVLG00005001784)	ELP3 (ENSSVLG00005001840)	NUGGC (ENSSVLG00005001962) #22	SCARA5 (ENSSVLG00005002024) #23	PBK (ENSSVLG00005002075) #24	ENSSVLG00005002097	ESCO2 (ENSSVLG00005002121) #25	CCDC25 (ENSSVLG00005002167) #26	SCARA3 (ENSSVLG00005002219) #27	CLU (ENSSVLG00005002257) #28	ENSSVLG00005002289 #29	ADAM2 (ENSSVLG00005002341) #30	EPHX2 (ENSSVLG00005002467) #31	CHRNA2 (ENSSVLG00005002577) #32	PTK2B (ENSSVLG00005002627) #33	ENSSVLG00005002776	TRIM35 (ENSSVLG00005002788) #34	STMN4 (ENSSVLG00005002831) #36
Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT00940000161092	ENSGT00940000154323.b	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000154999.B.k	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380.p #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT00940000161092	ENSGT00940000154323.b	ENSGT00940000156020.b.a	ENSGT01030000234551.k.d.a.c	ENSGT00940000156020.a	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380.p #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Guinea pig	MODERN SPECIES	1	ENSCPOG00000006054	NEIL2 (ENSCPOG00000006058)	FDFT1 (ENSCPOG00000007700)	CTSB (ENSCPOG00000009125)	DEFB136 (ENSCPOG00000000541)	ENSCPOG00000005487	ENSCPOG00000020935	ENSCPOG00000026053	ENSCPOG00000039861	ENSCPOG00000030429	ENSCPOG00000000422	ENSCPOG00000014840	ZNF395 (ENSCPOG00000003689)	PNOC (ENSCPOG00000006646)	ELP3 (ENSCPOG00000003742)	NUGGC (ENSCPOG00000003741) #22	SCARA5 (ENSCPOG00000023428) #23	PBK (ENSCPOG00000010826) #24	ESCO2 (ENSCPOG00000024189) #25	CCDC25 (ENSCPOG00000038303) #26	SCARA3 (ENSCPOG00000034540) #27	CLU (ENSCPOG00000019546) #28	ADAM2 (ENSCPOG00000022133) #30	EPHX2 (ENSCPOG00000037609) #31	CHRNA2 (ENSCPOG00000038123) #32	PTK2B (ENSCPOG00000004602) #33	TRIM35 (ENSCPOG00000032287) #34	STMN4 (ENSCPOG00000005528) #36	ADRA1A (ENSCPOG00000038399) #37	DPYSL2 (ENSCPOG00000025679)	BNIP3L (ENSCPOG00000034680)
Hystricomorpha_b	ANCESTRAL SPECIES	30	ENSGT00940000161092	ENSGT00940000154323.b	ENSGT00940000156020.b.a	ENSGT01030000234551.k.d.a.c	ENSGT00940000156020.a	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380.p #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a
Degu	MODERN SPECIES	77	ENSODEG00000008517	MSRA (ENSODEG00000008050)	ENSODEG00000019405	KIF13B (ENSODEG00000009358)	HMBOX1 (ENSODEG00000009907)	ENSODEG00000019625	INTS9 (ENSODEG00000007631)	EXTL3 (ENSODEG00000008663)	ENSODEG00000008198	ENSODEG00000019437	FZD3 (ENSODEG00000008946)	FBXO16 (ENSODEG00000008057)	ZNF395 (ENSODEG00000007787)	PNOC (ENSODEG00000007324)	ELP3 (ENSODEG00000008983)	NUGGC (ENSODEG00000007232) #22	SCARA5 (ENSODEG00000007378) #23	PBK (ENSODEG00000009607) #24	ESCO2 (ENSODEG00000010631) #25	CCDC25 (ENSODEG00000007236) #26	SCARA3 (ENSODEG00000007451) #27	CLU (ENSODEG00000007758) #28	ENSODEG00000012794 #29	ADAM2 (ENSODEG00000008302) #30	EPHX2 (ENSODEG00000007405) #31	CHRNA2 (ENSODEG00000008004) #32	PTK2B (ENSODEG00000009950) #33	TRIM35 (ENSODEG00000008434) #34	STMN4 (ENSODEG00000006658) #36	ENSODEG00000010902	ADRA1A (ENSODEG00000007554) #37
Long-tailed chinchilla	MODERN SPECIES	110	SOX7 (ENSCLAG00000014320)	C8orf74 (ENSCLAG00000016673)	PRSS55 (ENSCLAG00000015325)	ENSCLAG00000016541	ENSCLAG00000015445	MSRA (ENSCLAG00000016097)	KIF13B (ENSCLAG00000014088)	ENSCLAG00000014654	INTS9 (ENSCLAG00000015789)	EXTL3 (ENSCLAG00000016016)	FZD3 (ENSCLAG00000015263)	FBXO16 (ENSCLAG00000017107)	ZNF395 (ENSCLAG00000015098)	PNOC (ENSCLAG00000013995)	ELP3 (ENSCLAG00000016550)	NUGGC (ENSCLAG00000014640) #22	SCARA5 (ENSCLAG00000015896) #23	PBK (ENSCLAG00000014953) #24	ESCO2 (ENSCLAG00000017015) #25	CCDC25 (ENSCLAG00000013927) #26	SCARA3 (ENSCLAG00000016246) #27	CLU (ENSCLAG00000014457) #28	ENSCLAG00000014336 #29	ADAM2 (ENSCLAG00000014916) #30	EPHX2 (ENSCLAG00000014569) #31	CHRNA2 (ENSCLAG00000016813) #32	PTK2B (ENSCLAG00000015285) #33	TRIM35 (ENSCLAG00000014327) #34	STMN4 (ENSCLAG00000014584) #36	ADRA1A (ENSCLAG00000014689) #37	DPYSL2 (ENSCLAG00000015960)
Naked mole-rat female	MODERN SPECIES	25	SOX7 (ENSHGLG00000007410)	ENSHGLG00000006715	PRSS55 (ENSHGLG00000005245)	PRSS51 (ENSHGLG00000005119)	ENSHGLG00000008586	ENSHGLG00000006978	ENSHGLG00000004739	HMBOX1 (ENSHGLG00000008466)	INTS9 (ENSHGLG00000005379)	EXTL3 (ENSHGLG00000004822)	FZD3 (ENSHGLG00000015551)	FBXO16 (ENSHGLG00000014834)	ZNF395 (ENSHGLG00000017520)	PNOC (ENSHGLG00000043429)	ELP3 (ENSHGLG00000004990)	NUGGC (ENSHGLG00000015007) #22	SCARA5 (ENSHGLG00000013223) #23	PBK (ENSHGLG00000018426) #24	ESCO2 (ENSHGLG00000008587) #25	CCDC25 (ENSHGLG00000007627) #26	SCARA3 (ENSHGLG00000006976) #27	Clu (ENSHGLG00000033946) #28	ENSHGLG00000004501 #29	ENSHGLG00000045036	ADAM2 (ENSHGLG00000007670) #30	EPHX2 (ENSHGLG00000005581) #31	CHRNA2 (ENSHGLG00000004833) #32	PTK2B (ENSHGLG00000015272) #33	TRIM35 (ENSHGLG00000034100) #34	STMN4 (ENSHGLG00000016773) #36	ENSHGLG00000045878
Lagomorpha	ANCESTRAL SPECIES	60	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a	ENSGT00940000156020.b.b	ENSGT00940000156020.a	ENSGT00390000003823	ENSGT00940000155500	ENSGT00940000154928.c.a	ENSGT00390000001445	ENSGT00940000156692	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00940000157136	ENSGT00950000183149.C	ENSGT00390000013141	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00940000158614 #31	ENSGT00940000158299 #32	ENSGT00940000157269.a.a #33	ENSGT00940000160868 #34	ENSGT01030000234597.a.b.a #36	ENSGT00940000159105 #37	ENSGT01030000234527.A.a.b.a.a	ENSGT00390000013415.a.b	ENSGT00950000182864.a.b.a
Rabbit	MODERN SPECIES	11	C8orf74 (ENSOCUG00000015568)	ENSOCUG00000010566	PRSS55 (ENSOCUG00000012405)	ENSOCUG00000035787	ENSOCUG00000023048	MSRA (ENSOCUG00000003370)	KIF13B (ENSOCUG00000005942)	HMBOX1 (ENSOCUG00000017211)	INTS9 (ENSOCUG00000015356)	EXTL3 (ENSOCUG00000015351)	FZD3 (ENSOCUG00000025264)	FBXO16 (ENSOCUG00000022817)	ZNF395 (ENSOCUG00000014174)	PNOC (ENSOCUG00000014172)	ELP3 (ENSOCUG00000000034)	NUGGC (ENSOCUG00000000032) #22	SCARA5 (ENSOCUG00000026532) #23	PBK (ENSOCUG00000000031) #24	ESCO2 (ENSOCUG00000009932) #25	CCDC25 (ENSOCUG00000009924) #26	SCARA3 (ENSOCUG00000009918) #27	CLU (ENSOCUG00000005985) #28	ENSOCUG00000024474 #29	ADAM2 (ENSOCUG00000006251) #30	CHRNA2 (ENSOCUG00000007679) #32	PTK2B (ENSOCUG00000007668) #33	TRIM35 (ENSOCUG00000007658) #34	STMN4 (ENSOCUG00000007652) #36	ENSOCUG00000038802	ADRA1A (ENSOCUG00000000775) #37	ENSOCUG00000033215