Muroidea	ANCESTRAL SPECIES	26	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Cricetinae	ANCESTRAL SPECIES	18	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Chinese hamster chok1gshd	MODERN SPECIES	3	4930578I06Rik (ENSCGRG00001002855) #7	Rp1l1 (ENSCGRG00001000883) #8	Prss55 (ENSCGRG00001012725) #9	Prss51 (ENSCGRG00001017289) #10	Prss52 (ENSCGRG00001022178) #11	Msra (ENSCGRG00001014400) #12	Kif13b (ENSCGRG00001002755) #13	Hmbox1 (ENSCGRG00001006124) #14	Ints9 (ENSCGRG00001024549) #15	Extl3 (ENSCGRG00001009621) #16	Fzd3 (ENSCGRG00001017329) #17	Fbxo16 (ENSCGRG00001016357) #18	Zfp395 (ENSCGRG00001018152) #19	Pnoc (ENSCGRG00001020999) #20	Elp3 (ENSCGRG00001002047) #21	Nuggc (ENSCGRG00001024841) #22	Scara5 (ENSCGRG00001004427) #23	Pbk (ENSCGRG00001007773) #24	Esco2 (ENSCGRG00001016894) #25	Ccdc25 (ENSCGRG00001014249) #26	Scara3 (ENSCGRG00001018699) #27	Clu (ENSCGRG00001021841) #28	Gulo (ENSCGRG00001019987) #29	Adam2 (ENSCGRG00001012300) #30	Ephx2 (ENSCGRG00001003555) #31	ENSCGRG00001003198 #32	Chrna2 (ENSCGRG00001025060) #33	Ptk2b (ENSCGRG00001013042) #34	Trim35 (ENSCGRG00001019610) #35	ENSCGRG00001009280 #36	Stmn4 (ENSCGRG00001008937) #37
Golden Hamster	MODERN SPECIES	670	4930578I06Rik (ENSMAUG00000015281) #7	Rp1l1 (ENSMAUG00000006210) #8	Prss55 (ENSMAUG00000003349) #9	Prss51 (ENSMAUG00000019793) #10	Prss52 (ENSMAUG00000020307) #11	Msra (ENSMAUG00000002110) #12	Kif13b (ENSMAUG00000016652) #13	Hmbox1 (ENSMAUG00000017893) #14	Ints9 (ENSMAUG00000016286) #15	Extl3 (ENSMAUG00000013025) #16	Fzd3 (ENSMAUG00000020808) #17	Fbxo16 (ENSMAUG00000014801) #18	ENSMAUG00000019639 #19	Pnoc (ENSMAUG00000005940) #20	Elp3 (ENSMAUG00000013672) #21	Nuggc (ENSMAUG00000014486) #22	Scara5 (ENSMAUG00000012698) #23	Pbk (ENSMAUG00000000786) #24	Esco2 (ENSMAUG00000018840) #25	Ccdc25 (ENSMAUG00000018478) #26	Scara3 (ENSMAUG00000008370) #27	Clu (ENSMAUG00000001027) #28	Gulo (ENSMAUG00000013257) #29	Adam2 (ENSMAUG00000021964) #30	Ephx2 (ENSMAUG00000010745) #31	Chrna2 (ENSMAUG00000009044) #33	Ptk2b (ENSMAUG00000018808) #34	Trim35 (ENSMAUG00000010808) #35	Stmn4 (ENSMAUG00000012567) #37	Adra1a (ENSMAUG00000019248)	Dpysl2 (ENSMAUG00000006007)
Murinae	ANCESTRAL SPECIES	16	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Mus	ANCESTRAL SPECIES	8	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT01030000234551.k.d.a.c	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT00860000136174
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT00860000136174
Mouse	MODERN SPECIES	5	4930578I06Rik (ENSMUSG00000021961) #7	Rp1l1 (ENSMUSG00000046049) #8	Prss55 (ENSMUSG00000034623) #9	Prss51 (ENSMUSG00000052099) #10	Prss52 (ENSMUSG00000021966) #11	Msra (ENSMUSG00000054733) #12	Kif13b (ENSMUSG00000060012) #13	Hmbox1 (ENSMUSG00000021972) #14	Ints9 (ENSMUSG00000021975) #15	Extl3 (ENSMUSG00000021978) #16	Fzd3 (ENSMUSG00000007989) #17	Fbxo16 (ENSMUSG00000034532) #18	Zfp395 (ENSMUSG00000034522) #19	Pnoc (ENSMUSG00000045731) #20	Elp3 (ENSMUSG00000022031) #21	Nuggc (ENSMUSG00000061356) #22	Scara5 (ENSMUSG00000022032) #23	Pbk (ENSMUSG00000022033) #24	Esco2 (ENSMUSG00000022034) #25	Ccdc25 (ENSMUSG00000022035) #26	Scara3 (ENSMUSG00000034463) #27	Clu (ENSMUSG00000022037) #28	Gulo (ENSMUSG00000034450) #29	Adam2 (ENSMUSG00000022039) #30	Ephx2 (ENSMUSG00000022040) #31	Chrna2 (ENSMUSG00000022041) #33	Ptk2b (ENSMUSG00000059456) #34	Trim35 (ENSMUSG00000022043) #35	Stmn4 (ENSMUSG00000022044) #37	Adra1a (ENSMUSG00000045875)	Dpysl2 (ENSMUSG00000022048)
Ryukyu mouse	MODERN SPECIES	5	4930578I06Rik (MGP_CAROLIEiJ_G0019411) #7	Rp1l1 (MGP_CAROLIEiJ_G0019412) #8	Prss55 (MGP_CAROLIEiJ_G0019413) #9	MGP_CAROLIEiJ_G0019414	Prss52 (MGP_CAROLIEiJ_G0019415) #11	Msra (MGP_CAROLIEiJ_G0019416) #12	Kif13b (MGP_CAROLIEiJ_G0019417) #13	Hmbox1 (MGP_CAROLIEiJ_G0019418) #14	Ints9 (MGP_CAROLIEiJ_G0019419) #15	Extl3 (MGP_CAROLIEiJ_G0019420) #16	Fzd3 (MGP_CAROLIEiJ_G0019421) #17	Fbxo16 (MGP_CAROLIEiJ_G0019422) #18	Zfp395 (MGP_CAROLIEiJ_G0019423) #19	Pnoc (MGP_CAROLIEiJ_G0019424) #20	Elp3 (MGP_CAROLIEiJ_G0019425) #21	Nuggc (MGP_CAROLIEiJ_G0019426) #22	Scara5 (MGP_CAROLIEiJ_G0019427) #23	Pbk (MGP_CAROLIEiJ_G0019428) #24	Esco2 (MGP_CAROLIEiJ_G0019429) #25	Ccdc25 (MGP_CAROLIEiJ_G0019430) #26	Scara3 (MGP_CAROLIEiJ_G0019431) #27	Clu (MGP_CAROLIEiJ_G0019432) #28	Gulo (MGP_CAROLIEiJ_G0019433) #29	Adam2 (MGP_CAROLIEiJ_G0019434) #30	Ephx2 (MGP_CAROLIEiJ_G0019435) #31	Chrna2 (MGP_CAROLIEiJ_G0019436) #33	Ptk2b (MGP_CAROLIEiJ_G0019437) #34	Trim35 (MGP_CAROLIEiJ_G0019438) #35	Stmn4 (MGP_CAROLIEiJ_G0019439) #37	Adra1a (MGP_CAROLIEiJ_G0019440)	MGP_CAROLIEiJ_G0019441
Upper Galilee mountains blind mole rat	MODERN SPECIES	589	4930578I06Rik (ENSNGAG00000009966) #7	Prss55 (ENSNGAG00000011795) #9	ENSNGAG00000021775	Prss52 (ENSNGAG00000023654) #11	Msra (ENSNGAG00000017348) #12	ENSNGAG00000010801	Kif13b (ENSNGAG00000018729) #13	Hmbox1 (ENSNGAG00000022905) #14	Ints9 (ENSNGAG00000024198) #15	Extl3 (ENSNGAG00000020413) #16	Fzd3 (ENSNGAG00000018670) #17	Fbxo16 (ENSNGAG00000012031) #18	Zfp395 (ENSNGAG00000004006) #19	Pnoc (ENSNGAG00000013397) #20	Elp3 (ENSNGAG00000004373) #21	Nuggc (ENSNGAG00000022052) #22	Scara5 (ENSNGAG00000006829) #23	Pbk (ENSNGAG00000023879) #24	Esco2 (ENSNGAG00000013208) #25	Ccdc25 (ENSNGAG00000018920) #26	Scara3 (ENSNGAG00000023203) #27	Clu (ENSNGAG00000013029) #28	Gulo (ENSNGAG00000024191) #29	Adam2 (ENSNGAG00000005586) #30	Ephx2 (ENSNGAG00000022968) #31	Chrna2 (ENSNGAG00000023099) #33	Ptk2b (ENSNGAG00000023988) #34	Trim35 (ENSNGAG00000023890) #35	Stmn4 (ENSNGAG00000019172) #37