Rodentia	ANCESTRAL SPECIES	21	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00950000185466	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105
Rodentia_B	ANCESTRAL SPECIES	24	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Myomorpha	ANCESTRAL SPECIES	29	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Muroidea	ANCESTRAL SPECIES	26	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Cricetinae	ANCESTRAL SPECIES	18	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Chinese hamster chok1gshd	MODERN SPECIES	3	4930578I06Rik (ENSCGRG00001002855) #7	Rp1l1 (ENSCGRG00001000883) #8	Prss55 (ENSCGRG00001012725) #9	Prss51 (ENSCGRG00001017289) #10	Prss52 (ENSCGRG00001022178) #11	Msra (ENSCGRG00001014400) #12	Kif13b (ENSCGRG00001002755) #13	Hmbox1 (ENSCGRG00001006124) #14	Ints9 (ENSCGRG00001024549) #15	Extl3 (ENSCGRG00001009621) #16	Fzd3 (ENSCGRG00001017329) #17	Fbxo16 (ENSCGRG00001016357) #18	Zfp395 (ENSCGRG00001018152) #19	Pnoc (ENSCGRG00001020999) #20	Elp3 (ENSCGRG00001002047) #21	Nuggc (ENSCGRG00001024841) #22	Scara5 (ENSCGRG00001004427) #23	Pbk (ENSCGRG00001007773) #24	Esco2 (ENSCGRG00001016894) #25	Ccdc25 (ENSCGRG00001014249) #26	Scara3 (ENSCGRG00001018699) #27	Clu (ENSCGRG00001021841) #28	Gulo (ENSCGRG00001019987) #29	Adam2 (ENSCGRG00001012300) #30	Ephx2 (ENSCGRG00001003555) #31	ENSCGRG00001003198 #32	Chrna2 (ENSCGRG00001025060) #33	Ptk2b (ENSCGRG00001013042) #34	Trim35 (ENSCGRG00001019610) #35	ENSCGRG00001009280 #36	Stmn4 (ENSCGRG00001008937) #37
Golden Hamster	MODERN SPECIES	670	4930578I06Rik (ENSMAUG00000015281) #7	Rp1l1 (ENSMAUG00000006210) #8	Prss55 (ENSMAUG00000003349) #9	Prss51 (ENSMAUG00000019793) #10	Prss52 (ENSMAUG00000020307) #11	Msra (ENSMAUG00000002110) #12	Kif13b (ENSMAUG00000016652) #13	Hmbox1 (ENSMAUG00000017893) #14	Ints9 (ENSMAUG00000016286) #15	Extl3 (ENSMAUG00000013025) #16	Fzd3 (ENSMAUG00000020808) #17	Fbxo16 (ENSMAUG00000014801) #18	ENSMAUG00000019639 #19	Pnoc (ENSMAUG00000005940) #20	Elp3 (ENSMAUG00000013672) #21	Nuggc (ENSMAUG00000014486) #22	Scara5 (ENSMAUG00000012698) #23	Pbk (ENSMAUG00000000786) #24	Esco2 (ENSMAUG00000018840) #25	Ccdc25 (ENSMAUG00000018478) #26	Scara3 (ENSMAUG00000008370) #27	Clu (ENSMAUG00000001027) #28	Gulo (ENSMAUG00000013257) #29	Adam2 (ENSMAUG00000021964) #30	Ephx2 (ENSMAUG00000010745) #31	Chrna2 (ENSMAUG00000009044) #33	Ptk2b (ENSMAUG00000018808) #34	Trim35 (ENSMAUG00000010808) #35	Stmn4 (ENSMAUG00000012567) #37	Adra1a (ENSMAUG00000019248)	Dpysl2 (ENSMAUG00000006007)
Murinae	ANCESTRAL SPECIES	16	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Mus	ANCESTRAL SPECIES	8	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT01030000234551.k.d.a.c	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT00860000136174
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT00860000136174
Mouse	MODERN SPECIES	5	4930578I06Rik (ENSMUSG00000021961) #7	Rp1l1 (ENSMUSG00000046049) #8	Prss55 (ENSMUSG00000034623) #9	Prss51 (ENSMUSG00000052099) #10	Prss52 (ENSMUSG00000021966) #11	Msra (ENSMUSG00000054733) #12	Kif13b (ENSMUSG00000060012) #13	Hmbox1 (ENSMUSG00000021972) #14	Ints9 (ENSMUSG00000021975) #15	Extl3 (ENSMUSG00000021978) #16	Fzd3 (ENSMUSG00000007989) #17	Fbxo16 (ENSMUSG00000034532) #18	Zfp395 (ENSMUSG00000034522) #19	Pnoc (ENSMUSG00000045731) #20	Elp3 (ENSMUSG00000022031) #21	Nuggc (ENSMUSG00000061356) #22	Scara5 (ENSMUSG00000022032) #23	Pbk (ENSMUSG00000022033) #24	Esco2 (ENSMUSG00000022034) #25	Ccdc25 (ENSMUSG00000022035) #26	Scara3 (ENSMUSG00000034463) #27	Clu (ENSMUSG00000022037) #28	Gulo (ENSMUSG00000034450) #29	Adam2 (ENSMUSG00000022039) #30	Ephx2 (ENSMUSG00000022040) #31	Chrna2 (ENSMUSG00000022041) #33	Ptk2b (ENSMUSG00000059456) #34	Trim35 (ENSMUSG00000022043) #35	Stmn4 (ENSMUSG00000022044) #37	Adra1a (ENSMUSG00000045875)	Dpysl2 (ENSMUSG00000022048)
Ryukyu mouse	MODERN SPECIES	5	4930578I06Rik (MGP_CAROLIEiJ_G0019411) #7	Rp1l1 (MGP_CAROLIEiJ_G0019412) #8	Prss55 (MGP_CAROLIEiJ_G0019413) #9	MGP_CAROLIEiJ_G0019414	Prss52 (MGP_CAROLIEiJ_G0019415) #11	Msra (MGP_CAROLIEiJ_G0019416) #12	Kif13b (MGP_CAROLIEiJ_G0019417) #13	Hmbox1 (MGP_CAROLIEiJ_G0019418) #14	Ints9 (MGP_CAROLIEiJ_G0019419) #15	Extl3 (MGP_CAROLIEiJ_G0019420) #16	Fzd3 (MGP_CAROLIEiJ_G0019421) #17	Fbxo16 (MGP_CAROLIEiJ_G0019422) #18	Zfp395 (MGP_CAROLIEiJ_G0019423) #19	Pnoc (MGP_CAROLIEiJ_G0019424) #20	Elp3 (MGP_CAROLIEiJ_G0019425) #21	Nuggc (MGP_CAROLIEiJ_G0019426) #22	Scara5 (MGP_CAROLIEiJ_G0019427) #23	Pbk (MGP_CAROLIEiJ_G0019428) #24	Esco2 (MGP_CAROLIEiJ_G0019429) #25	Ccdc25 (MGP_CAROLIEiJ_G0019430) #26	Scara3 (MGP_CAROLIEiJ_G0019431) #27	Clu (MGP_CAROLIEiJ_G0019432) #28	Gulo (MGP_CAROLIEiJ_G0019433) #29	Adam2 (MGP_CAROLIEiJ_G0019434) #30	Ephx2 (MGP_CAROLIEiJ_G0019435) #31	Chrna2 (MGP_CAROLIEiJ_G0019436) #33	Ptk2b (MGP_CAROLIEiJ_G0019437) #34	Trim35 (MGP_CAROLIEiJ_G0019438) #35	Stmn4 (MGP_CAROLIEiJ_G0019439) #37	Adra1a (MGP_CAROLIEiJ_G0019440)	MGP_CAROLIEiJ_G0019441
Upper Galilee mountains blind mole rat	MODERN SPECIES	589	4930578I06Rik (ENSNGAG00000009966) #7	Prss55 (ENSNGAG00000011795) #9	ENSNGAG00000021775	Prss52 (ENSNGAG00000023654) #11	Msra (ENSNGAG00000017348) #12	ENSNGAG00000010801	Kif13b (ENSNGAG00000018729) #13	Hmbox1 (ENSNGAG00000022905) #14	Ints9 (ENSNGAG00000024198) #15	Extl3 (ENSNGAG00000020413) #16	Fzd3 (ENSNGAG00000018670) #17	Fbxo16 (ENSNGAG00000012031) #18	Zfp395 (ENSNGAG00000004006) #19	Pnoc (ENSNGAG00000013397) #20	Elp3 (ENSNGAG00000004373) #21	Nuggc (ENSNGAG00000022052) #22	Scara5 (ENSNGAG00000006829) #23	Pbk (ENSNGAG00000023879) #24	Esco2 (ENSNGAG00000013208) #25	Ccdc25 (ENSNGAG00000018920) #26	Scara3 (ENSNGAG00000023203) #27	Clu (ENSNGAG00000013029) #28	Gulo (ENSNGAG00000024191) #29	Adam2 (ENSNGAG00000005586) #30	Ephx2 (ENSNGAG00000022968) #31	Chrna2 (ENSNGAG00000023099) #33	Ptk2b (ENSNGAG00000023988) #34	Trim35 (ENSNGAG00000023890) #35	Stmn4 (ENSNGAG00000019172) #37
Lesser Egyptian jerboa	MODERN SPECIES	125										ENSJJAG00000010971	ENSJJAG00000003893	Syt4 (ENSJJAG00000022564)	Rit2 (ENSJJAG00000021302)	ENSJJAG00000018157	Pik3c3 (ENSJJAG00000000136)	Nuggc (ENSJJAG00000020439) #22	Scara5 (ENSJJAG00000015781) #23	ENSJJAG00000013978 #24	Esco2 (ENSJJAG00000016831) #25	ENSJJAG00000016351 #26	Scara3 (ENSJJAG00000015535) #27	Clu (ENSJJAG00000011133) #28	Gulo (ENSJJAG00000008997) #29	Adam2 (ENSJJAG00000021729) #30	Ephx2 (ENSJJAG00000021412) #31	Chrna2 (ENSJJAG00000018111) #33	Ptk2b (ENSJJAG00000013115) #34	Trim35 (ENSJJAG00000011832) #35	ENSJJAG00000011170	Stmn4 (ENSJJAG00000010283) #37	Adra1a (ENSJJAG00000008597)
Kangaroo rat	MODERN SPECIES	393	Pinx1 (ENSDORG00000004065)	4930578I06Rik (ENSDORG00000011613) #7	Prss55 (ENSDORG00000000666) #9	ENSDORG00000028826	ENSDORG00000030167 ##10	Msra (ENSDORG00000004084) #12	Kif13b (ENSDORG00000015972) #13	Hmbox1 (ENSDORG00000015971) #14	Ints9 (ENSDORG00000008604) #15	Extl3 (ENSDORG00000011937) #16	Fzd3 (ENSDORG00000026500) #17	Fbxo16 (ENSDORG00000009764) #18	Zfp395 (ENSDORG00000005052) #19	Pnoc (ENSDORG00000005053) #20	Elp3 (ENSDORG00000012451) #21	Nuggc (ENSDORG00000012444) #22	Scara5 (ENSDORG00000010511) #23	Esco2 (ENSDORG00000014897) #25	Ccdc25 (ENSDORG00000006595) #26	Scara3 (ENSDORG00000015368) #27	Clu (ENSDORG00000010249) #28	Gulo (ENSDORG00000024023) #29	Adam2 (ENSDORG00000002055) #30	Ephx2 (ENSDORG00000010204) #31	Chrna2 (ENSDORG00000010203) #33	Ptk2b (ENSDORG00000010200) #34	Trim35 (ENSDORG00000010264) #35	Stmn4 (ENSDORG00000010266) #37
Rodentia_A	ANCESTRAL SPECIES	21	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00950000185466	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105
Sciuridae	ANCESTRAL SPECIES	29	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00950000185466	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105
Marmotini	ANCESTRAL SPECIES	30	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.c #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Marmotini_b	ANCESTRAL SPECIES	138	ENSGT00940000154323.b #7	ENSGT00940000154242.a #8	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839.c #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37
Squirrel	MODERN SPECIES	275	ENSSTOG00000021185 #8	PRSS55 (ENSSTOG00000011728) #9	ENSSTOG00000034166	ENSSTOG00000025120 #11	MSRA (ENSSTOG00000024714) #12	ENSSTOG00000033697	KIF13B (ENSSTOG00000004778) #13	HMBOX1 (ENSSTOG00000004762) #14	INTS9 (ENSSTOG00000011703) #15	EXTL3 (ENSSTOG00000019391) #16	FZD3 (ENSSTOG00000011064) #17	FBXO16 (ENSSTOG00000029192) #18	ZNF395 (ENSSTOG00000001396) #19	PNOC (ENSSTOG00000001392) #20	ELP3 (ENSSTOG00000000508) #21	NUGGC (ENSSTOG00000000498) #22	SCARA5 (ENSSTOG00000000496) #23	PBK (ENSSTOG00000028798) #24	ESCO2 (ENSSTOG00000000493) #25	CCDC25 (ENSSTOG00000000490) #26	SCARA3 (ENSSTOG00000023922) #27	CLU (ENSSTOG00000026703) #28	ENSSTOG00000026329 #29	ADAM2 (ENSSTOG00000011994) #30	ENSSTOG00000004408	EPHX2 (ENSSTOG00000010872) #31	CHRNA2 (ENSSTOG00000016060) #33	PTK2B (ENSSTOG00000009205) #34	TRIM35 (ENSSTOG00000020486) #35	STMN4 (ENSSTOG00000007200) #37
Arctic ground squirrel	MODERN SPECIES	203	ENSUPAG00010003314 #8	ENSUPAG00010003330 #9	PRSS51 (ENSUPAG00010003337) #10	ENSUPAG00010003355 #11	MSRA (ENSUPAG00010003365) #12	KIF13B (ENSUPAG00010003395) #13	HMBOX1 (ENSUPAG00010003528) #14	INTS9 (ENSUPAG00010003602) #15	EXTL3 (ENSUPAG00010003630) #16	FZD3 (ENSUPAG00010003648) #17	FBXO16 (ENSUPAG00010003660) #18	ENSUPAG00010003704	ZNF395 (ENSUPAG00010003708) #19	PNOC (ENSUPAG00010003731) #20	ELP3 (ENSUPAG00010003737) #21	NUGGC (ENSUPAG00010003759) #22	SCARA5 (ENSUPAG00010003795) #23	PBK (ENSUPAG00010003803) #24	ESCO2 (ENSUPAG00010003820) #25	CCDC25 (ENSUPAG00010003839) #26	SCARA3 (ENSUPAG00010003867) #27	CLU (ENSUPAG00010003882) #28	ENSUPAG00010003895 #29	ADAM2 (ENSUPAG00010003911) #30	EPHX2 (ENSUPAG00010003940) #31	ENSUPAG00010004106 #34	TRIM35 (ENSUPAG00010004126) #35	STMN4 (ENSUPAG00010004143) #37
Alpin marmot	MODERN SPECIES	61	ENSMMMG00000012429 #9	PRSS51 (ENSMMMG00000012438) #10	ENSMMMG00000012451 #11	MSRA (ENSMMMG00000012458) #12	ENSMMMG00000012470	KIF13B (ENSMMMG00000012474) #13	HMBOX1 (ENSMMMG00000012513) #14	INTS9 (ENSMMMG00000012520) #15	EXTL3 (ENSMMMG00000012868) #16	FZD3 (ENSMMMG00000012893) #17	ENSMMMG00000012897	FBXO16 (ENSMMMG00000012903) #18	ZNF395 (ENSMMMG00000012939) #19	PNOC (ENSMMMG00000012949) #20	ELP3 (ENSMMMG00000012964) #21	NUGGC (ENSMMMG00000012992) #22	SCARA5 (ENSMMMG00000013022) #23	ENSMMMG00000013030 #24	ESCO2 (ENSMMMG00000013045) #25	CCDC25 (ENSMMMG00000013061) #26	SCARA3 (ENSMMMG00000013090) #27	CLU (ENSMMMG00000013091) #28	ENSMMMG00000013102 #29	ADAM2 (ENSMMMG00000013126) #30	EPHX2 (ENSMMMG00000013154) #31	ENSMMMG00000013222 #33	PTK2B (ENSMMMG00000013250) #34	ENSMMMG00000013471 #35	STMN4 (ENSMMMG00000013482) #37	ADRA1A (ENSMMMG00000013560)	DPYSL2 (ENSMMMG00000013573)
Eurasian red squirrel	MODERN SPECIES	14	C8orf74 (ENSSVLG00005006760) #7	ENSSVLG00005006804 #8	PRSS55 (ENSSVLG00005000180) #9	PRSS51 (ENSSVLG00005000208) #10	ENSSVLG00005000266 ##10	MSRA (ENSSVLG00005000328) #12	KIF13B (ENSSVLG00005000912) #13	HMBOX1 (ENSSVLG00005001517) #14	INTS9 (ENSSVLG00005001565) #15	EXTL3 (ENSSVLG00005001634) #16	FZD3 (ENSSVLG00005001660) #17	FBXO16 (ENSSVLG00005001709) #18	ZNF395 (ENSSVLG00005001763) #19	PNOC (ENSSVLG00005001784) #20	ELP3 (ENSSVLG00005001840) #21	NUGGC (ENSSVLG00005001962) #22	SCARA5 (ENSSVLG00005002024) #23	PBK (ENSSVLG00005002075) #24	ENSSVLG00005002097	ESCO2 (ENSSVLG00005002121) #25	CCDC25 (ENSSVLG00005002167) #26	SCARA3 (ENSSVLG00005002219) #27	CLU (ENSSVLG00005002257) #28	ENSSVLG00005002289 #29	ADAM2 (ENSSVLG00005002341) #30	EPHX2 (ENSSVLG00005002467) #31	CHRNA2 (ENSSVLG00005002577) #33	PTK2B (ENSSVLG00005002627) #34	ENSSVLG00005002776	TRIM35 (ENSSVLG00005002788) #35	STMN4 (ENSSVLG00005002831) #37
Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT00940000161092	ENSGT00940000154323.b #7	ENSGT00940000156020.b.a #9	ENSGT00940000156020.b.b #10	ENSGT00940000154999.B.k #11	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380.p #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT00940000161092	ENSGT00940000154323.b #7	ENSGT00940000156020.b.a #9	ENSGT01030000234551.k.d.a.c	ENSGT00940000156020.a ##10	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380.p #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Guinea pig	MODERN SPECIES	1	ENSCPOG00000006054	NEIL2 (ENSCPOG00000006058)	FDFT1 (ENSCPOG00000007700)	CTSB (ENSCPOG00000009125)	DEFB136 (ENSCPOG00000000541)	ENSCPOG00000005487	ENSCPOG00000020935	ENSCPOG00000026053	ENSCPOG00000039861	ENSCPOG00000030429	ENSCPOG00000000422	ENSCPOG00000014840	ZNF395 (ENSCPOG00000003689) #19	PNOC (ENSCPOG00000006646) #20	ELP3 (ENSCPOG00000003742) #21	NUGGC (ENSCPOG00000003741) #22	SCARA5 (ENSCPOG00000023428) #23	PBK (ENSCPOG00000010826) #24	ESCO2 (ENSCPOG00000024189) #25	CCDC25 (ENSCPOG00000038303) #26	SCARA3 (ENSCPOG00000034540) #27	CLU (ENSCPOG00000019546) #28	ADAM2 (ENSCPOG00000022133) #30	EPHX2 (ENSCPOG00000037609) #31	CHRNA2 (ENSCPOG00000038123) #33	PTK2B (ENSCPOG00000004602) #34	TRIM35 (ENSCPOG00000032287) #35	STMN4 (ENSCPOG00000005528) #37	ADRA1A (ENSCPOG00000038399)	DPYSL2 (ENSCPOG00000025679)	BNIP3L (ENSCPOG00000034680)
Hystricomorpha_b	ANCESTRAL SPECIES	30	ENSGT00940000161092	ENSGT00940000154323.b #7	ENSGT00940000156020.b.a #9	ENSGT01030000234551.k.d.a.c	ENSGT00940000156020.a ##10	ENSGT00390000003823 #12	ENSGT00940000155500 #13	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380.p #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000161961 #30	ENSGT00940000158614 #31	ENSGT00940000158299 #33	ENSGT00940000157269.a.a #34	ENSGT00940000160868 #35	ENSGT01030000234597.a.b.a #37	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a
Degu	MODERN SPECIES	77	ENSODEG00000008517 ##10	MSRA (ENSODEG00000008050) #12	ENSODEG00000019405	KIF13B (ENSODEG00000009358) #13	HMBOX1 (ENSODEG00000009907) #14	ENSODEG00000019625	INTS9 (ENSODEG00000007631) #15	EXTL3 (ENSODEG00000008663) #16	ENSODEG00000008198	ENSODEG00000019437	FZD3 (ENSODEG00000008946) #17	FBXO16 (ENSODEG00000008057) #18	ZNF395 (ENSODEG00000007787) #19	PNOC (ENSODEG00000007324) #20	ELP3 (ENSODEG00000008983) #21	NUGGC (ENSODEG00000007232) #22	SCARA5 (ENSODEG00000007378) #23	PBK (ENSODEG00000009607) #24	ESCO2 (ENSODEG00000010631) #25	CCDC25 (ENSODEG00000007236) #26	SCARA3 (ENSODEG00000007451) #27	CLU (ENSODEG00000007758) #28	ENSODEG00000012794 #29	ADAM2 (ENSODEG00000008302) #30	EPHX2 (ENSODEG00000007405) #31	CHRNA2 (ENSODEG00000008004) #33	PTK2B (ENSODEG00000009950) #34	TRIM35 (ENSODEG00000008434) #35	STMN4 (ENSODEG00000006658) #37	ENSODEG00000010902	ADRA1A (ENSODEG00000007554)
Long-tailed chinchilla	MODERN SPECIES	110	SOX7 (ENSCLAG00000014320)	C8orf74 (ENSCLAG00000016673) #7	PRSS55 (ENSCLAG00000015325) #9	ENSCLAG00000016541	ENSCLAG00000015445 ##10	MSRA (ENSCLAG00000016097) #12	KIF13B (ENSCLAG00000014088) #13	ENSCLAG00000014654 #14	INTS9 (ENSCLAG00000015789) #15	EXTL3 (ENSCLAG00000016016) #16	FZD3 (ENSCLAG00000015263) #17	FBXO16 (ENSCLAG00000017107) #18	ZNF395 (ENSCLAG00000015098) #19	PNOC (ENSCLAG00000013995) #20	ELP3 (ENSCLAG00000016550) #21	NUGGC (ENSCLAG00000014640) #22	SCARA5 (ENSCLAG00000015896) #23	PBK (ENSCLAG00000014953) #24	ESCO2 (ENSCLAG00000017015) #25	CCDC25 (ENSCLAG00000013927) #26	SCARA3 (ENSCLAG00000016246) #27	CLU (ENSCLAG00000014457) #28	ENSCLAG00000014336 #29	ADAM2 (ENSCLAG00000014916) #30	EPHX2 (ENSCLAG00000014569) #31	CHRNA2 (ENSCLAG00000016813) #33	PTK2B (ENSCLAG00000015285) #34	TRIM35 (ENSCLAG00000014327) #35	STMN4 (ENSCLAG00000014584) #37	ADRA1A (ENSCLAG00000014689)	DPYSL2 (ENSCLAG00000015960)
Naked mole-rat female	MODERN SPECIES	25	SOX7 (ENSHGLG00000007410)	ENSHGLG00000006715 #7	PRSS55 (ENSHGLG00000005245) #9	PRSS51 (ENSHGLG00000005119) #10	ENSHGLG00000008586 #11	ENSHGLG00000006978 #12	ENSHGLG00000004739 #13	HMBOX1 (ENSHGLG00000008466) #14	INTS9 (ENSHGLG00000005379) #15	EXTL3 (ENSHGLG00000004822) #16	FZD3 (ENSHGLG00000015551) #17	FBXO16 (ENSHGLG00000014834) #18	ZNF395 (ENSHGLG00000017520) #19	PNOC (ENSHGLG00000043429) #20	ELP3 (ENSHGLG00000004990) #21	NUGGC (ENSHGLG00000015007) #22	SCARA5 (ENSHGLG00000013223) #23	PBK (ENSHGLG00000018426) #24	ESCO2 (ENSHGLG00000008587) #25	CCDC25 (ENSHGLG00000007627) #26	SCARA3 (ENSHGLG00000006976) #27	Clu (ENSHGLG00000033946) #28	ENSHGLG00000004501 #29	ENSHGLG00000045036	ADAM2 (ENSHGLG00000007670) #30	EPHX2 (ENSHGLG00000005581) #31	CHRNA2 (ENSHGLG00000004833) #33	PTK2B (ENSHGLG00000015272) #34	TRIM35 (ENSHGLG00000034100) #35	STMN4 (ENSHGLG00000016773) #37	ENSHGLG00000045878