Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a #7	ENSGT00940000156020.b.b #8	ENSGT00940000154999.B.k #9	ENSGT00390000003823 #10	ENSGT00940000155500 #12	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105 #35	ENSGT01030000234527.A.a.b.a.a #36	ENSGT01030000234522.C.b.e.a.a.b
Equus	ANCESTRAL SPECIES	24	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a #7	ENSGT00940000156020.b.b #8	ENSGT00940000154999.B.k #9	ENSGT00390000003823 #10	ENSGT00940000155500 #12	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00510000049722 #29	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34	ENSGT00940000159105 #35	ENSGT01030000234527.A.a.b.a.a #36	ENSGT01030000234522.C.b.e.a.a.b
Donkey	MODERN SPECIES	22	PRSS55 (ENSEASG00005016390) #7	ENSEASG00005016388 #8	ENSEASG00005016386 #9	ENSEASG00005016382 #10	ENSEASG00005033370 #11	ENSEASG00005016368 #12	ENSEASG00005037289 #13	HMBOX1 (ENSEASG00005016360) #14	INTS9 (ENSEASG00005016353) #15	EXTL3 (ENSEASG00005016347) #16	FZD3 (ENSEASG00005016341) #17	FBXO16 (ENSEASG00005016336) #18	ZNF395 (ENSEASG00005016329) #19	PNOC (ENSEASG00005016327) #20	ELP3 (ENSEASG00005016324) #21	NUGGC (ENSEASG00005016323) #22	SCARA5 (ENSEASG00005016320) #23	PBK (ENSEASG00005016314) #24	ESCO2 (ENSEASG00005016302) #25	CCDC25 (ENSEASG00005037176) #26	SCARA3 (ENSEASG00005016295) #27	CLU (ENSEASG00005016294) #28	ENSEASG00005016285 #29	EPHX2 (ENSEASG00005016280) #30	CHRNA2 (ENSEASG00005016279) #31	PTK2B (ENSEASG00005015727) #32	TRIM35 (ENSEASG00005015643) #33	STMN4 (ENSEASG00005015641) #34	ADRA1A (ENSEASG00005015639) #35	DPYSL2 (ENSEASG00005015636) #36	BNIP3L (ENSEASG00005015633) #37
Horse	MODERN SPECIES	11	C2H8orf74 (ENSECAG00000012975)	ENSECAG00000030856	PRSS55 (ENSECAG00000012775) #7	ENSECAG00000012766	ENSECAG00000038501 #9	MSRA (ENSECAG00000001697) #10	KIF13B (ENSECAG00000008773) #12	HMBOX1 (ENSECAG00000008240) #14	INTS9 (ENSECAG00000019848) #15	EXTL3 (ENSECAG00000018661) #16	FZD3 (ENSECAG00000018292) #17	FBXO16 (ENSECAG00000017125) #18	ZNF395 (ENSECAG00000015884) #19	PNOC (ENSECAG00000015761) #20	ELP3 (ENSECAG00000014859) #21	NUGGC (ENSECAG00000014074) #22	SCARA5 (ENSECAG00000013893) #23	PBK (ENSECAG00000013223) #24	ESCO2 (ENSECAG00000012899) #25	CCDC25 (ENSECAG00000011924) #26	SCARA3 (ENSECAG00000011350) #27	CLU (ENSECAG00000007010) #28	GULO (ENSECAG00000003068) #29	EPHX2 (ENSECAG00000023444) #30	CHRNA2 (ENSECAG00000022609) #31	PTK2B (ENSECAG00000018924) #32	TRIM35 (ENSECAG00000018548) #33	STMN4 (ENSECAG00000044039) #34	ADRA1A (ENSECAG00000015917) #35	DPYSL2 (ENSECAG00000008662) #36	PNMA2 (ENSECAG00000008517)
Chiroptera	ANCESTRAL SPECIES	61	ENSGT00940000161092	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a #7	ENSGT00940000154999.B.k #9	ENSGT00390000003823 #10	ENSGT00940000155500 #12	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34
Microchiroptera	ANCESTRAL SPECIES	52	ENSGT00940000161092	ENSGT00940000154323.b	ENSGT00940000154242.a	ENSGT00940000156020.b.a #7	ENSGT00940000154999.B.k #9	ENSGT00390000003823 #10	ENSGT00940000155500 #12	ENSGT00940000154928.c.a #14	ENSGT00390000001445 #15	ENSGT00940000156692 #16	ENSGT00940000156491.a #17	ENSGT00940000159021 #18	ENSGT00940000157136 #19	ENSGT00950000183149.C #20	ENSGT00390000013141 #21	ENSGT00390000007091 #22	ENSGT00950000183074.B.a.a #23	ENSGT00720000108839 #24	ENSGT00940000158598 #25	ENSGT00390000004380 #26	ENSGT00940000158238 #27	ENSGT00530000063668.B #28	ENSGT00940000158614 #30	ENSGT00940000158299 #31	ENSGT00940000157269.a.a #32	ENSGT00940000160868 #33	ENSGT01030000234597.a.b.a #34
Greater horseshoe bat	MODERN SPECIES	9	SOX7 (ENSRFEG00010016358)	C8orf74 (ENSRFEG00010016274)	ENSRFEG00010015733 #9	MSRA (ENSRFEG00010015483) #10	ENSRFEG00010015448	ENSRFEG00010015406	KIF13B (ENSRFEG00010015351) #12	HMBOX1 (ENSRFEG00010015241) #14	INTS9 (ENSRFEG00010015122) #15	EXTL3 (ENSRFEG00010015082) #16	FZD3 (ENSRFEG00010015031) #17	ENSRFEG00010014701 #18	ZNF395 (ENSRFEG00010014637) #19	PNOC (ENSRFEG00010014558) #20	ELP3 (ENSRFEG00010014240) #21	NUGGC (ENSRFEG00010014148) #22	SCARA5 (ENSRFEG00010014042) #23	ENSRFEG00010013982	PBK (ENSRFEG00010013905) #24	ESCO2 (ENSRFEG00010013852) #25	CCDC25 (ENSRFEG00010013725) #26	SCARA3 (ENSRFEG00010013596) #27	CLU (ENSRFEG00010013527) #28	ENSRFEG00010013238 #30	CHRNA2 (ENSRFEG00010013124) #31	PTK2B (ENSRFEG00010012994) #32	RAPGEF2 (ENSRFEG00010011724)	C4orf45 (ENSRFEG00010011590)	FNIP2 (ENSRFEG00010011548)	ENSRFEG00010011368	ETFDH (ENSRFEG00010011182)