Percora_a ANCESTRAL SPECIES 24 ENSGT00940000154323.b ENSGT00940000154242.a ENSGT00940000156020.b.a #7 ENSGT00940000156020.b.b #8 ENSGT00940000154999.B.k ENSGT00390000003823 #9 ENSGT00940000155500 #10 ENSGT00940000154928.c.a #11 ENSGT00390000001445 #13 ENSGT00940000156692 #14 ENSGT00940000156491.a #15 ENSGT00940000159021.d ##16 ENSGT00940000157136 #17 ENSGT00950000183149.C #18 ENSGT00390000013141 #21 ENSGT00390000007091 #22 ENSGT00950000183074.B.a.a #23 ENSGT00720000108839.l.a #24 ENSGT00940000158598 #27 ENSGT00390000004380 #28 ENSGT00940000158238 #29 ENSGT00530000063668.B #30 ENSGT00510000049722 ENSGT00940000158614 ENSGT00940000158299 ENSGT00940000157269.a.a ENSGT00940000160868 ENSGT01030000234597.a.b.a ENSGT00940000159105 ENSGT01030000234527.A.a.b.a.a ENSGT01030000234522.C.b.e.a.a.b Bovidae ANCESTRAL SPECIES 14 ENSGT00940000154323.b ENSGT00940000154242.a ENSGT00940000156020.b.a #7 ENSGT00940000156020.b.b #8 ENSGT00940000154999.B.k ENSGT00390000003823 #9 ENSGT00940000155500 #10 ENSGT00940000154928.c.a #11 ENSGT00390000001445 #13 ENSGT00940000156692 #14 ENSGT00940000156491.a #15 ENSGT00940000159021.d ##16 ENSGT00940000157136 #17 ENSGT00950000183149.C #18 ENSGT00390000013141 #21 ENSGT00390000007091 #22 ENSGT00950000183074.B.a.a #23 ENSGT00720000108839.l.a #24 ENSGT00940000158598 #27 ENSGT00390000004380 #28 ENSGT00940000158238 #29 ENSGT00530000063668.B.a #30 ENSGT00390000006684 #31 ENSGT00390000007535 #32 ENSGT01100000264077 ENSGT00530000064170.e #33 ENSGT00940000153173.a #34 ENSGT00940000157772 #35 ENSGT00950000185419 ENSGT00940000156665 ENSGT00390000005644 Caprinae ANCESTRAL SPECIES 43 ENSGT00940000154323.b ENSGT00940000154242.a ENSGT00940000156020.b.a #7 ENSGT00940000156020.b.b #8 ENSGT00940000154999.B.k ENSGT00390000003823 #9 ENSGT00940000155500 #10 ENSGT00940000154928.c.a #11 ENSGT00390000001445 #13 ENSGT00940000156692 #14 ENSGT00940000156491.a #15 ENSGT00940000159021.c.c #16 ENSGT00940000157136 #17 ENSGT00950000183149.C #18 ENSGT00390000013141 #21 ENSGT00390000007091 #22 ENSGT00950000183074.B.a.a #23 ENSGT00720000108839.l.a #24 ENSGT00940000158598 #27 ENSGT00390000004380 #28 ENSGT00940000158238 #29 ENSGT00530000063668.B.a #30 ENSGT00390000006684 #31 ENSGT00390000007535 #32 ENSGT00530000064170.e #33 ENSGT00940000153173.a #34 ENSGT00940000157772 #35 ENSGT00940000156665 ENSGT00390000005644 ENSGT01050000244898.a.a.a.b ENSGT01000000214430.b Goat MODERN SPECIES 27 ENSCHIG00000002212 #7 PRSS51 (ENSCHIG00000012314) #8 MSRA (ENSCHIG00000014457) #9 KIF13B (ENSCHIG00000011751) #10 HMBOX1 (ENSCHIG00000003424) #11 ENSCHIG00000023976 #12 INTS9 (ENSCHIG00000012847) #13 EXTL3 (ENSCHIG00000027229) #14 FZD3 (ENSCHIG00000023532) #15 ENSCHIG00000013264 #16 ZNF395 (ENSCHIG00000013915) #17 PNOC (ENSCHIG00000027029) #18 ENSCHIG00000011279 #19 ENSCHIG00000011858 #20 ELP3 (ENSCHIG00000025755) #21 NUGGC (ENSCHIG00000016874) #22 SCARA5 (ENSCHIG00000002743) #23 ENSCHIG00000003841 #24 ENSCHIG00000008066 #25 ENSCHIG00000021742 #26 ESCO2 (ENSCHIG00000012950) #27 CCDC25 (ENSCHIG00000005126) #28 SCARA3 (ENSCHIG00000025164) #29 ENSCHIG00000010216 #30 TMEM215 (ENSCHIG00000008408) #31 NDUFB6 (ENSCHIG00000027260) #32 TOPORS (ENSCHIG00000012805) #33 RIGI (ENSCHIG00000025883) #34 ACO1 (ENSCHIG00000007667) #35 ENSCHIG00000020484 #36 ENSCHIG00000024316 #37 Rambouillet Sheep MODERN SPECIES 11 C8orf74 (ENSOARG00020007527) PRSS55 (ENSOARG00020007475) #7 PRSS51 (ENSOARG00020007420) #8 ENSOARG00020007386 MSRA (ENSOARG00020007105) #9 ENSOARG00020007036 KIF13B (ENSOARG00020006646) #10 HMBOX1 (ENSOARG00020006289) #11 INTS9 (ENSOARG00020006140) #13 EXTL3 (ENSOARG00020006102) #14 FZD3 (ENSOARG00020006061) #15 FBXO16 (ENSOARG00020005917) #16 ZNF395 (ENSOARG00020005891) #17 PNOC (ENSOARG00020011467) #18 ELP3 (ENSOARG00020010811) #21 NUGGC (ENSOARG00020010690) #22 SCARA5 (ENSOARG00020010482) #23 PBK (ENSOARG00020010392) #24 ESCO2 (ENSOARG00020010286) #27 ENSOARG00020010095 #28 ENSOARG00020010017 SCARA3 (ENSOARG00020009895) #29 ENSOARG00020009753 #30 TMEM215 (ENSOARG00020009741) #31 NDUFB6 (ENSOARG00020009670) #32 ENSOARG00020009633 RIGI (ENSOARG00020009445) #34 ACO1 (ENSOARG00020009310) #35 ENSOARG00020009264 ENSOARG00020009228 ENSOARG00020009145 Bovinae ANCESTRAL SPECIES 39 ENSGT00940000156020.b.a #7 ENSGT00940000156020.b.b #8 ENSGT00940000154999.B.k ENSGT00390000003823 #9 ENSGT00940000155500 #10 ENSGT00940000154928.c.a #11 ENSGT00390000001445 #13 ENSGT00940000156692 #14 ENSGT00940000156491.a #15 ENSGT00940000159021.d ##16 ENSGT00940000157136 #17 ENSGT00950000183149.C #18 ENSGT00390000008767.a.b ##19 ENSGT00950000182967.a.a.a.a.a.a.n.d.b.a.b ENSGT00390000013141 #21 ENSGT00390000007091 #22 ENSGT00950000183074.B.a.a #23 ENSGT00720000108839.l.a #24 ENSGT00940000158598 #27 ENSGT00390000004380 #28 ENSGT00940000158238 #29 ENSGT00530000063668.B.a #30 ENSGT00390000013989.a.ab ENSGT00390000005140.b.b.d ENSGT00390000006684 #31 ENSGT00390000007535 #32 ENSGT01100000264077 ENSGT00530000064170.e #33 ENSGT00940000153173.a #34 ENSGT00940000157772 #35 ENSGT00940000158555.i.b Bos ANCESTRAL SPECIES 10 ENSGT00940000156020.b.a #7 ENSGT00940000156020.b.b #8 ENSGT00940000154999.B.k ENSGT00390000003823 #9 ENSGT00940000155500 #10 ENSGT00940000154928.c.a #11 ENSGT00390000001445 #13 ENSGT00940000156692 #14 ENSGT00940000156491.a #15 ENSGT00940000159021.d ##16 ENSGT00940000157136 #17 ENSGT00950000183149.C #18 ENSGT00390000008767.a.b ##19 ENSGT00950000182967.a.a.a.a.a.a.n.d.b.a.b ENSGT00390000013141 #21 ENSGT00390000007091 #22 ENSGT00950000183074.B.a.a #23 ENSGT00720000108839.l.a.a #24 ENSGT00940000158598 #27 ENSGT00390000004380 #28 ENSGT00940000158238 #29 ENSGT00530000063668.B.a #30 ENSGT00390000013989.a.ab.c.a ENSGT00390000006684 #31 ENSGT00390000007535 #32 ENSGT01100000264077 ENSGT00530000064170.e #33 ENSGT00940000153173.a #34 ENSGT00940000157772 #35 ENSGT00940000158555.i.b ENSGT00950000185419 Bos_a ANCESTRAL SPECIES 50 ENSGT00940000156020.b.a #7 ENSGT00940000156020.b.b #8 ENSGT00940000154999.B.k ENSGT00390000003823 #9 ENSGT00940000155500 #10 ENSGT00940000154928.c.a #11 ENSGT00390000001445 #13 ENSGT00940000156692 #14 ENSGT00940000156491.a #15 ENSGT00940000159021.d ##16 ENSGT00940000157136 #17 ENSGT00950000183149.C #18 ENSGT00390000008767.a.b ##19 ENSGT00950000182967.a.a.a.a.a.a.n.d.b.a.b ENSGT00390000013141 #21 ENSGT00390000007091 #22 ENSGT00950000183074.B.a.a #23 ENSGT00720000108839.l.a.a #24 ENSGT00940000158598.i #27 ENSGT00390000004380 #28 ENSGT00940000158238 #29 ENSGT00530000063668.B.a #30 ENSGT00390000013989.a.ab.c.a ENSGT00390000006684 #31 ENSGT00390000007535 #32 ENSGT01100000264077 ENSGT00530000064170.e #33 ENSGT00940000153173.a #34 ENSGT00940000157772 #35 ENSGT00940000158555.i.b ENSGT00730000110997.l Domestic yak MODERN SPECIES 26 ENSBGRG00000002363 ENSBGRG00000002358 MSRA (ENSBGRG00000002267) #9 ENSBGRG00000002206 #10 HMBOX1 (ENSBGRG00000002158) #11 INTS9 (ENSBGRG00000002069) #13 EXTL3 (ENSBGRG00000002025) #14 ENSBGRG00000002017 ##16 ZNF395 (ENSBGRG00000001954) #17 ENSBGRG00000001926 ##19 PNOC (ENSBGRG00000001909) #18 ENSBGRG00000001891 ENSBGRG00000001885 ELP3 (ENSBGRG00000001836) #21 ENSBGRG00000001818 NUGGC (ENSBGRG00000001756) #22 SCARA5 (ENSBGRG00000001655) #23 ENSBGRG00000001612 #24 ENSBGRG00000001592 #27 CCDC25 (ENSBGRG00000001516) #28 SCARA3 (ENSBGRG00000001492) #29 ENSBGRG00000001476 ENSBGRG00000001455 #30 ENSBGRG00000001445 ENSBGRG00000001432 TMEM215 (ENSBGRG00000001425) #31 ENSBGRG00000001402 #32 ENSBGRG00000001384 TOPORS (ENSBGRG00000001367) #33 ENSBGRG00000001348 RIGI (ENSBGRG00000001303) #34 Wild yak MODERN SPECIES 1155 EXTL3 (ENSBMUG00000011033) #14 FZD3 (ENSBMUG00000011021) #15 ENSBMUG00000011006 ##16 ZNF395 (ENSBMUG00000010982) #17 PNOC (ENSBMUG00000010949) #18 ENSBMUG00000010943 ##19 ENSBMUG00000010935 ELP3 (ENSBMUG00000010845) #21 NUGGC (ENSBMUG00000010743) #22 SCARA5 (ENSBMUG00000010671) #23 PBK (ENSBMUG00000010592) #24 ESCO2 (ENSBMUG00000010565) #27 CCDC25 (ENSBMUG00000010538) #28 Bos_b ANCESTRAL SPECIES 3 ENSGT00940000154242.a ENSGT00940000156020.b.a #7 ENSGT00940000156020.b.b #8 ENSGT00940000154999.B.k ENSGT00390000003823 #9 ENSGT00940000155500 #10 ENSGT00940000154928.c.a #11 ENSGT00390000001445 #13 ENSGT00940000156692 #14 ENSGT00940000156491.a #15 ENSGT00940000159021.d ##16 ENSGT00940000157136 #17 ENSGT00950000183149.C #18 ENSGT00950000182967.a.a.a.a.a.a.n.d.b.a.b ENSGT00390000013141 #21 ENSGT00390000007091 #22 ENSGT00950000183074.B.a.a #23 ENSGT00720000108839.l.a.a #24 ENSGT00940000158598 #27 ENSGT00390000004380 #28 ENSGT00940000158238 #29 ENSGT00530000063668.B.a #30 ENSGT00390000013989.a.ab.c.a ENSGT00390000006684 #31 ENSGT00390000007535 #32 ENSGT01100000264077 ENSGT00530000064170.e #33 ENSGT00940000153173.a #34 ENSGT00940000157772 #35 ENSGT00950000185419 ENSGT00940000156665 Hybrid Bos Indicus MODERN SPECIES 27 ENSBIXG00005004942 PRSS55 (ENSBIXG00005028589) #7 PRSS51 (ENSBIXG00005028570) #8 MSRA (ENSBIXG00005028512) #9 ENSBIXG00005028432 ENSBIXG00005028370 #10 HMBOX1 (ENSBIXG00005004868) #11 INTS9 (ENSBIXG00005028226) #13 EXTL3 (ENSBIXG00005028171) #14 FZD3 (ENSBIXG00005028137) #15 ENSBIXG00005028113 ##16 ZNF395 (ENSBIXG00005028019) #17 ENSBIXG00005027879 #18 ENSBIXG00005004791 ELP3 (ENSBIXG00005027835) #21 NUGGC (ENSBIXG00005027718) #22 SCARA5 (ENSBIXG00005004753) #23 ENSBIXG00005027580 #24 ESCO2 (ENSBIXG00005027560) #27 CCDC25 (ENSBIXG00005004734) #28 SCARA3 (ENSBIXG00005027449) #29 ENSBIXG00005027363 #30 TMEM215 (ENSBIXG00005027309) #31 NDUFB6 (ENSBIXG00005027286) #32 ENSBIXG00005027238 TOPORS (ENSBIXG00005027224) #33 RIGI (ENSBIXG00005004673) #34 ACO1 (ENSBIXG00005027147) #35 ENSBIXG00005004636 ENSBIXG00005027020 ENSBIXG00005027001 Cow MODERN SPECIES 27 RP1L1 (ENSBTAG00000020155) PRSS55 (ENSBTAG00000034665) #7 MSRA (ENSBTAG00000021632) #9 ENSBTAG00000038291 ENSBTAG00000040038 KIF13B (ENSBTAG00000017232) #10 HMBOX1 (ENSBTAG00000010819) #11 INTS9 (ENSBTAG00000008845) #13 EXTL3 (ENSBTAG00000008844) #14 FZD3 (ENSBTAG00000035084) #15 FBXO16 (ENSBTAG00000034626) ##16 ZNF395 (ENSBTAG00000000536) #17 PNOC (ENSBTAG00000000534) #18 ENSBTAG00000054551 ELP3 (ENSBTAG00000002730) #21 NUGGC (ENSBTAG00000011321) #22 SCARA5 (ENSBTAG00000019636) #23 PBK (ENSBTAG00000021069) #24 ESCO2 (ENSBTAG00000006551) #27 CCDC25 (ENSBTAG00000006547) #28 SCARA3 (ENSBTAG00000007657) #29 CLU (ENSBTAG00000005574) #30 ENSBTAG00000034560 TMEM215 (ENSBTAG00000013974) #31 NDUFB6 (ENSBTAG00000005907) #32 TOPORS (ENSBTAG00000005905) #33 RIGI (ENSBTAG00000003366) #34 ACO1 (ENSBTAG00000000555) #35 ENSBTAG00000052065 ENSBTAG00000018340 ENSBTAG00000050975 American bison MODERN SPECIES 3066 PRSS55 (ENSBBBG00000024534) #7 PRSS51 (ENSBBBG00000024522) #8 ENSBBBG00000024513 MSRA (ENSBBBG00000024509) #9 ENSBBBG00000024420 #10 HMBOX1 (ENSBBBG00000024381) #11 INTS9 (ENSBBBG00000024337) #13 EXTL3 (ENSBBBG00000006297) #14 FZD3 (ENSBBBG00000024196) #15 ENSBBBG00000007807 ##16 ZNF395 (ENSBBBG00000006273) #17 PNOC (ENSBBBG00000024099) #18 ENSBBBG00000024093 ##19 ENSBBBG00000006262 ELP3 (ENSBBBG00000006255) #21 NUGGC (ENSBBBG00000023948) #22 ZFP64 (ENSBBBG00000023903) ENSBBBG00000008855 BCAS1 (ENSBBBG00000023792) CYP24A1 (ENSBBBG00000023751) ENSBBBG00000023699 DOK5 (ENSBBBG00000023680) ENSBBBG00000023664 Siberian musk deer MODERN SPECIES 82 ENSMMSG00000002664 PRSS55 (ENSMMSG00000002646) #7 PRSS51 (ENSMMSG00000002628) #8 ENSMMSG00000002600 MSRA (ENSMMSG00000002535) #9 KIF13B (ENSMMSG00000002322) #10 HMBOX1 (ENSMMSG00000002228) #11 INTS9 (ENSMMSG00000002117) #13 EXTL3 (ENSMMSG00000002080) #14 FZD3 (ENSMMSG00000002043) #15 FBXO16 (ENSMMSG00000001979) #16 ZNF395 (ENSMMSG00000001932) #17 PNOC (ENSMMSG00000001909) #18 ENSMMSG00000001898 ##19 ELP3 (ENSMMSG00000001831) #21 NUGGC (ENSMMSG00000001781) #22 SCARA5 (ENSMMSG00000001725) #23 PBK (ENSMMSG00000001701) #24 ESCO2 (ENSMMSG00000001669) #27 CCDC25 (ENSMMSG00000001626) #28