Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000155200	ENSGT00940000164375	ENSGT00940000153793	ENSGT00390000017697.b #8	ENSGT00940000159836 #11	ENSGT00940000161650 #12	ENSGT00940000160687 #13	ENSGT00940000159757 #14	ENSGT00550000074901 #15	ENSGT00390000005075 #16	ENSGT00390000008295.a #17	ENSGT00940000159573 #18	ENSGT00940000160432 #19	ENSGT00940000163203	ENSGT00940000162264 #21	ENSGT00940000158005 #22	ENSGT00390000003283 #23	ENSGT00980000202834	ENSGT00940000160587 #24	ENSGT00940000153691.a.a #25	ENSGT00940000153691.a.b #26	ENSGT00950000183082.a #27	ENSGT00960000186694	ENSGT00940000158136 #28	ENSGT00390000014869 #29	ENSGT00940000153577.C #30	ENSGT00950000182872.f.b.a #31	ENSGT00390000001622 #32	ENSGT01020000230389.a.a.b #33	ENSGT00940000154521.B #34	ENSGT00390000004215.a.b.b.c.a #35
Hystricomorpha	ANCESTRAL SPECIES	22	ENSGT00940000162924	ENSGT00940000155200	ENSGT00940000153793.j.a	ENSGT00940000153793.i.a	ENSGT00390000017697.b #8	ENSGT00940000159836 #11	ENSGT00940000161650 #12	ENSGT00940000160687 #13	ENSGT00940000159757 #14	ENSGT00550000074901 #15	ENSGT00390000005075 #16	ENSGT00390000008295.a #17	ENSGT00940000159573 #18	ENSGT00940000160432 #19	ENSGT00940000162264 #21	ENSGT00940000158005 #22	ENSGT00390000003283 #23	ENSGT00940000160587 #24	ENSGT00940000153691.a.a #25	ENSGT00940000153691.a.b #26	ENSGT00950000183082.a #27	ENSGT00960000186694	ENSGT00940000158136 #28	ENSGT00390000014869 #29	ENSGT00940000153577.C #30	ENSGT00950000182872.f.b.a #31	ENSGT00390000001622 #32	ENSGT01020000230389.a.a.b #33	ENSGT00940000154521.B #34	ENSGT00390000004215.a.b.b.c.a #35	ENSGT00390000004554.hb.a #36
Hystricomorpha_a	ANCESTRAL SPECIES	22	ENSGT00940000162924	ENSGT00940000155200	ENSGT00940000153793.j.a	ENSGT00940000153793.i.a	ENSGT00390000017697.b #8	ENSGT00940000159836 #11	ENSGT00940000161650 #12	ENSGT00940000160687 #13	ENSGT00940000159757 #14	ENSGT00550000074901 #15	ENSGT00390000005075 #16	ENSGT00390000008295.a #17	ENSGT00940000159573 #18	ENSGT00940000160432 #19	ENSGT00940000162264 #21	ENSGT00940000158005 #22	ENSGT00390000003283 #23	ENSGT00940000160587 #24	ENSGT00940000153691.a.a #25	ENSGT00940000153691.a.b #26	ENSGT00950000183082.a #27	ENSGT00960000186694	ENSGT00940000158136 #28	ENSGT00390000014869 #29	ENSGT00940000153577.C #30	ENSGT00950000182872.f.b.a #31	ENSGT00390000001622 #32	ENSGT01020000230389.a.a.b #33	ENSGT00940000154521.B #34	ENSGT00390000004215.a.b.b.c.a #35	ENSGT00390000004554.hb.a #36
Hystricomorpha_b	ANCESTRAL SPECIES	15	ENSGT00940000153793.j.a	ENSGT00940000164375	ENSGT00940000153793.i.b.c	ENSGT00940000153793.i.a	ENSGT00390000017697.b #8	ENSGT00940000159836 #11	ENSGT00940000161650 #12	ENSGT00940000160687 #13	ENSGT00940000159757 #14	ENSGT00550000074901 #15	ENSGT00390000005075 #16	ENSGT00390000008295.a #17	ENSGT00940000159573 #18	ENSGT00940000160432 #19	ENSGT00940000162264 #21	ENSGT00940000158005 #22	ENSGT00390000003283 #23	ENSGT00940000160587 #24	ENSGT00940000153691.a.a #25	ENSGT00940000153691.a.b #26	ENSGT00950000183082.a #27	ENSGT00940000158136 #28	ENSGT00390000014869 #29	ENSGT00940000153577.C #30	ENSGT00950000182872.f.b.a #31	ENSGT00390000001622 #32	ENSGT01020000230389.a.a.b #33	ENSGT00940000154521.B #34	ENSGT00390000004215.a.b.b.c.a #35	ENSGT00390000004554.hb.a #36	ENSGT00940000156939 #37
Long-tailed chinchilla	MODERN SPECIES	140		ENSCLAG00000006303 #8	ENSCLAG00000005701 #9	ENSCLAG00000005375 #10	RRAD (ENSCLAG00000005281) #11	CDH16 (ENSCLAG00000009522) #12	PDP2 (ENSCLAG00000010280) #13	CA7 (ENSCLAG00000009866) #14	NAE1 (ENSCLAG00000008427) #15	TERB1 (ENSCLAG00000007580) #16	DYNC1LI2 (ENSCLAG00000006461) #17	CMTM4 (ENSCLAG00000006181) #18	CMTM3 (ENSCLAG00000005520) #19	ENSCLAG00000005405 #20	CKLF (ENSCLAG00000008088) #21	TK2 (ENSCLAG00000008240) #22	BEAN1 (ENSCLAG00000008190) #23	CDH5 (ENSCLAG00000012589) #24	CDH11 (ENSCLAG00000016732) #25	CDH8 (ENSCLAG00000007676) #26	GOT2 (ENSCLAG00000007296) #27	SLC38A7 (ENSCLAG00000006853) #28	CNOT1 (ENSCLAG00000006289) #29	SETD6 (ENSCLAG00000004801) #30	NDRG4 (ENSCLAG00000004372) #31	GINS3 (ENSCLAG00000007546) #32	PRSS54 (ENSCLAG00000007356) #33	CCDC113 (ENSCLAG00000006984) #34	CSNK2A2 (ENSCLAG00000005997) #35	CFAP20 (ENSCLAG00000011438) #36	MMP15 (ENSCLAG00000007587) #37
Degu	MODERN SPECIES	52	ENSODEG00000015554	ENSODEG00000016915	ENSODEG00000016345	ENSODEG00000016240	ENSODEG00000015617 #8	RRAD (ENSODEG00000015827) #11	CDH16 (ENSODEG00000016010) #12	PDP2 (ENSODEG00000020328) #13	CA7 (ENSODEG00000015891) #14	ENSODEG00000016176 #15	TERB1 (ENSODEG00000017438) #16	ENSODEG00000016281 #17	CMTM4 (ENSODEG00000015905) #18	CMTM3 (ENSODEG00000016359) #19	CKLF (ENSODEG00000016474) #21	TK2 (ENSODEG00000016329) #22	BEAN1 (ENSODEG00000016084) #23	CDH5 (ENSODEG00000015848) #24	CDH11 (ENSODEG00000016523) #25	ENSODEG00000016848	ENSODEG00000016592	CDH8 (ENSODEG00000017240) #26	ENSODEG00000016371	ENSODEG00000016031	ENSODEG00000016606	ENSODEG00000020511	SLC38A7 (ENSODEG00000016307) #28	ENSODEG00000020325	CNOT1 (ENSODEG00000016337) #29	ENSODEG00000016070	SETD6 (ENSODEG00000016648) #30
Guinea pig	MODERN SPECIES	22	ENSCPOG00000005610	ENSCPOG00000034407	ENSCPOG00000034731	CIAO2B (ENSCPOG00000007431) #8	RRAD (ENSCPOG00000025211) #11	CDH16 (ENSCPOG00000021245) #12	PDP2 (ENSCPOG00000009661) #13	ENSCPOG00000033546	CA7 (ENSCPOG00000024957) #14	NAE1 (ENSCPOG00000020116) #15	TERB1 (ENSCPOG00000015414) #16	DYNC1LI2 (ENSCPOG00000015409) #17	CMTM4 (ENSCPOG00000015406) #18	ENSCPOG00000015404 #19	CKLF (ENSCPOG00000040504) #21	TK2 (ENSCPOG00000006736) #22	BEAN1 (ENSCPOG00000036515) #23	CDH5 (ENSCPOG00000037748) #24	ENSCPOG00000040767 #25	ENSCPOG00000036927 #25	ENSCPOG00000030109 #25	CDH8 (ENSCPOG00000007504) #26	ENSCPOG00000032851	GOT2 (ENSCPOG00000031089) #27	ENSCPOG00000009164	SLC38A7 (ENSCPOG00000009158) #28	CNOT1 (ENSCPOG00000013026) #29	SETD6 (ENSCPOG00000023334) #30	NDRG4 (ENSCPOG00000012449) #31	GINS3 (ENSCPOG00000035821) #32	PRSS54 (ENSCPOG00000002647) #33
Naked mole-rat female	MODERN SPECIES	26	ENSHGLG00000038316	MPHOSPH6 (ENSHGLG00000019140)	ENSHGLG00000045793	ENSHGLG00000018583	CIAO2B (ENSHGLG00000043672) #8	RRAD (ENSHGLG00000016885) #11	CDH16 (ENSHGLG00000019376) #12	PDP2 (ENSHGLG00000039814) #13	CA7 (ENSHGLG00000016917) #14	NAE1 (ENSHGLG00000018813) #15	TERB1 (ENSHGLG00000019160) #16	ENSHGLG00000017579 #17	CMTM4 (ENSHGLG00000010963) #18	CMTM3 (ENSHGLG00000011197) #19	ENSHGLG00000012002 #21	TK2 (ENSHGLG00000032022) #22	ENSHGLG00000045630	BEAN1 (ENSHGLG00000045590) #23	ENSHGLG00000013876 #24	ENSHGLG00000017123	ENSHGLG00000017133 #25	ENSHGLG00000046044	ENSHGLG00000034841	ENSHGLG00000033892	ENSHGLG00000013653	ENSHGLG00000012608 #26	ENSHGLG00000034274	ENSHGLG00000010708 #27	ENSHGLG00000011393	SLC38A7 (ENSHGLG00000012028) #28	CNOT1 (ENSHGLG00000014322) #29
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00940000164375	ENSGT00940000153793.k	ENSGT00940000153793.l	ENSGT00390000017697.b #8	ENSGT00940000159836 #11	ENSGT00940000161650 #12	ENSGT00940000160687 #13	ENSGT00940000159757 #14	ENSGT00550000074901 #15	ENSGT00390000005075 #16	ENSGT00390000008295.a #17	ENSGT00940000159573 #18	ENSGT00940000160432 #19	ENSGT00940000163203	ENSGT00940000162264 #21	ENSGT00940000158005 #22	ENSGT00390000003283 #23	ENSGT00980000202834	ENSGT00940000160587 #24	ENSGT00940000153691.a.a #25	ENSGT00940000153691.a.b #26	ENSGT00950000183082.a #27	ENSGT00960000186694	ENSGT00940000158136 #28	ENSGT00390000014869 #29	ENSGT00940000153577.C #30	ENSGT00950000182872.f.b.a #31	ENSGT00390000001622 #32	ENSGT01020000230389.a.a.b #33	ENSGT00940000154521.B #34	ENSGT00390000004215.a.b.b.c.a #35
Marmotini	ANCESTRAL SPECIES	17	ENSGT00940000153793.k.a.a.a.b	ENSGT00940000153793.k.a.a.b.a	ENSGT00940000153793.l	ENSGT00390000017697.b #8	ENSGT00940000159836 #11	ENSGT00940000161650 #12	ENSGT00940000160687 #13	ENSGT00940000159757 #14	ENSGT00550000074901 #15	ENSGT00390000005075 #16	ENSGT00390000008295.a #17	ENSGT00940000159573 #18	ENSGT00940000160432 #19	ENSGT00940000163203	ENSGT00940000162264 #21	ENSGT00940000158005 #22	ENSGT00390000003283 #23	ENSGT00940000160587 #24	ENSGT00940000153691.a.a #25	ENSGT00940000153691.a.b #26	ENSGT00950000183082.a.pb #27	ENSGT00940000158136 #28	ENSGT00390000014869 #29	ENSGT00940000153577.C #30	ENSGT00950000182872.f.b.a #31	ENSGT00390000001622 #32	ENSGT01020000230389.a.a.b #33	ENSGT00940000154521.B #34	ENSGT00390000004215.a.b.b.c.a #35	ENSGT00390000004554.hb.a #36	ENSGT00940000156939 #37
Marmotini_b	ANCESTRAL SPECIES	7	ENSGT00940000153793.k.a.a.a.a.a.a	ENSGT00940000153793.k.a.a.a.a.a.b	ENSGT00940000164375.b	ENSGT00390000017697.b #8	ENSGT00940000159836 #11	ENSGT00940000161650 #12	ENSGT00940000160687 #13	ENSGT00940000159757 #14	ENSGT00550000074901 #15	ENSGT00390000005075 #16	ENSGT00390000008295.a #17	ENSGT00940000159573 #18	ENSGT00940000160432 #19	ENSGT00940000163203	ENSGT00940000162264 #21	ENSGT00940000158005 #22	ENSGT00390000003283 #23	ENSGT00940000160587 #24	ENSGT00940000153691.a.a #25	ENSGT00940000153691.a.b #26	ENSGT00960000186694	ENSGT00950000183082.a.pb #27	ENSGT00940000158136 #28	ENSGT00390000014869 #29	ENSGT00940000153577.C #30	ENSGT00950000182872.f.b.a #31	ENSGT00390000001622 #32	ENSGT01020000230389.a.a.b #33	ENSGT00940000154521.B #34	ENSGT00390000004215.a.b.b.c.a #35	ENSGT00390000004554.hb.a #36
Squirrel	MODERN SPECIES	75	ENSSTOG00000019872	ENSSTOG00000028587	CIAO2B (ENSSTOG00000007870) #8	RRAD (ENSSTOG00000007859) #11	ENSSTOG00000007823 #12	ENSSTOG00000031778	ENSSTOG00000029943 #12	PDP2 (ENSSTOG00000007817) #13	CA7 (ENSSTOG00000021436) #14	NAE1 (ENSSTOG00000029230) #15	TERB1 (ENSSTOG00000007763) #16	DYNC1LI2 (ENSSTOG00000007750) #17	CMTM4 (ENSSTOG00000007736) #18	CMTM3 (ENSSTOG00000026680) #19	CKLF (ENSSTOG00000007682) #21	TK2 (ENSSTOG00000029024) #22	BEAN1 (ENSSTOG00000027189) #23	CDH5 (ENSSTOG00000006256) #24	CDH11 (ENSSTOG00000011815) #25	CDH8 (ENSSTOG00000003407) #26	ENSSTOG00000029905 #27	SLC38A7 (ENSSTOG00000005590) #28	CNOT1 (ENSSTOG00000005490) #29	SETD6 (ENSSTOG00000005479) #30	NDRG4 (ENSSTOG00000005454) #31	GINS3 (ENSSTOG00000005709) #32	PRSS54 (ENSSTOG00000003562) #33	CCDC113 (ENSSTOG00000028076) #34	CSNK2A2 (ENSSTOG00000003538) #35	CFAP20 (ENSSTOG00000003530) #36	MMP15 (ENSSTOG00000002405) #37
Arctic ground squirrel	MODERN SPECIES	105				CIAO2B (ENSUPAG00010021302) #8	RRAD (ENSUPAG00010021305) #11	CDH16 (ENSUPAG00010021315) #12	PDP2 (ENSUPAG00010021334) #13	CA7 (ENSUPAG00010021336) #14	NAE1 (ENSUPAG00010021346) #15	TERB1 (ENSUPAG00010021363) #16	DYNC1LI2 (ENSUPAG00010021388) #17	CMTM4 (ENSUPAG00010021404) #18	CMTM3 (ENSUPAG00010021411) #19	ENSUPAG00010021429	CKLF (ENSUPAG00010021432) #21	TK2 (ENSUPAG00010021435) #22	ENSUPAG00010021443	BEAN1 (ENSUPAG00010021449) #23	CDH5 (ENSUPAG00010021462) #24	CDH11 (ENSUPAG00010021471) #25	CDH8 (ENSUPAG00010021506) #26	ENSUPAG00010021532	ENSUPAG00010021533
Alpin marmot	MODERN SPECIES	23	ENSMMMG00000008154	ENSMMMG00000008269	ENSMMMG00000008297	ENSMMMG00000008323	CIAO2B (ENSMMMG00000008433) #8	CDH16 (ENSMMMG00000008458) #12	PDP2 (ENSMMMG00000008568) #13	CA7 (ENSMMMG00000008570) #14	NAE1 (ENSMMMG00000008593) #15	TERB1 (ENSMMMG00000008672) #16	DYNC1LI2 (ENSMMMG00000008716) #17	CMTM4 (ENSMMMG00000008768) #18	ENSMMMG00000008776 #19	ENSMMMG00000008786	CKLF (ENSMMMG00000008795) #21	TK2 (ENSMMMG00000008801) #22	BEAN1 (ENSMMMG00000008836) #23	CDH5 (ENSMMMG00000008857) #24	CDH11 (ENSMMMG00000008878) #25	CDH8 (ENSMMMG00000008922) #26	ENSMMMG00000009066	ENSMMMG00000009084	ENSMMMG00000009093 #27	ENSMMMG00000009103	SLC38A7 (ENSMMMG00000009115) #28	ENSMMMG00000009163	CNOT1 (ENSMMMG00000009174) #29	SETD6 (ENSMMMG00000009470) #30	NDRG4 (ENSMMMG00000009515) #31	GINS3 (ENSMMMG00000009647) #32	PRSS54 (ENSMMMG00000009656) #33
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005025098	ENSSVLG00005025347	ENSSVLG00005025467	CIAO2B (ENSSVLG00005025484) #8	RRAD (ENSSVLG00005025495) #11	CDH16 (ENSSVLG00005025529) #12	PDP2 (ENSSVLG00005025571) #13	CA7 (ENSSVLG00005025581) #14	NAE1 (ENSSVLG00005025610) #15	TERB1 (ENSSVLG00005025637) #16	DYNC1LI2 (ENSSVLG00005025665) #17	CMTM4 (ENSSVLG00005025679) #18	CMTM3 (ENSSVLG00005025691) #19	ENSSVLG00005025706	CKLF (ENSSVLG00005025721) #21	TK2 (ENSSVLG00005025748) #22	BEAN1 (ENSSVLG00005016934) #23	ENSSVLG00005016998	CDH5 (ENSSVLG00005017067) #24	CDH11 (ENSSVLG00005017448) #25	CDH8 (ENSSVLG00005017549) #26	ENSSVLG00005017795	ENSSVLG00005017835	GOT2 (ENSSVLG00005017895) #27	ENSSVLG00005017936	SLC38A7 (ENSSVLG00005017988) #28	CNOT1 (ENSSVLG00005018264) #29	SETD6 (ENSSVLG00005018395) #30	NDRG4 (ENSSVLG00005018581) #31	GINS3 (ENSSVLG00005018840) #32	PRSS54 (ENSSVLG00005018883) #33