Gnathostomata	ANCESTRAL SPECIES	20	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534	ENSGT00940000159240	ENSGT00940000167685	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00530000064489	ENSGT01060000250538	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000186338	ENSGT00950000183002.A #34	ENSGT00940000157490 #35
Euteleostomi	ANCESTRAL SPECIES	19	ENSGT00950000182931.B.b	ENSGT00390000005534	ENSGT00940000159240	ENSGT00940000167685	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT01030000235062	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00530000064489	ENSGT01060000250538	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35
Sarcopterygii	ANCESTRAL SPECIES	21	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT01030000235062	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00950000182959.b.a.b ##36
Tetrapoda	ANCESTRAL SPECIES	9	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT01030000235062	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Amniota	ANCESTRAL SPECIES	20	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT01030000235062	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000175801	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36
Mammalia	ANCESTRAL SPECIES	9	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT01030000235062	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000175801	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Theria	ANCESTRAL SPECIES	8	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000175801	ENSGT00390000017491.s.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Eutheria	ANCESTRAL SPECIES	3	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00940000162876 #20	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000175801	ENSGT00390000017491.s.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00940000162876 #20	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000175801	ENSGT00390000017491.s.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Primates	ANCESTRAL SPECIES		ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Haplorrhini	ANCESTRAL SPECIES		ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Simiiformes	ANCESTRAL SPECIES		ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523.b	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d.p #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328.q.b.a.a #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00940000162876 #20	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687.v #26	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.u ##26	ENSGT00940000155817.a.a #27	ENSGT00440000038603.n	ENSGT00390000017491.s.a.a.e #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36
Cebidae	ANCESTRAL SPECIES		ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523.b	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d.p #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328.q.b.a.a #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00940000162876 #20	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687.v #26	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.u ##26	ENSGT00940000155817.a.a #27	ENSGT00440000038603.n	ENSGT00390000017491.s.a.a.e #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Marmoset	MODERN SPECIES	2	ENSCJAG00000076330 #7	ENSCJAG00000070220 #8	FAR1 (ENSCJAG00000010077) #9	SPON1 (ENSCJAG00000010055) #10	ENSCJAG00000040842 #11	ENSCJAG00000046068 #12	COPB1 (ENSCJAG00000038149) #13	PSMA1 (ENSCJAG00000009850) #14	ENSCJAG00000082675 #15	ENSCJAG00000086676 #16	PDE3B (ENSCJAG00000009800) #17	CYP2R1 (ENSCJAG00000009776) #18	ENSCJAG00000075982 #19	ENSCJAG00000009757 #20	CALCB (ENSCJAG00000072821) #21	INSC (ENSCJAG00000009705) #22	ENSCJAG00000084026 #23	SOX6 (ENSCJAG00000009643) #24	ENSCJAG00000080150 #25	C11orf58 (ENSCJAG00000041748) #26	PLEKHA7 (ENSCJAG00000009589) #27	ENSCJAG00000080001 #28	ENSCJAG00000009564 #29	PIK3C2A (ENSCJAG00000009472) #30	NUCB2 (ENSCJAG00000009422) #31	KCNJ11 (ENSCJAG00000048022) #32	ABCC8 (ENSCJAG00000009368) #33	USH1C (ENSCJAG00000009310) #34	OTOG (ENSCJAG00000009263) #35	MYOD1 (ENSCJAG00000009258) #36	KCNC1 (ENSCJAG00000007290) #37
Cebidae_a	ANCESTRAL SPECIES	10	ENSGT00940000158780.a	ENSGT00940000162628	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523.b	ENSGT00390000007975.a.k	ENSGT00390000018603	ENSGT00390000006367.d.p #9	ENSGT00940000154910.b.b #10	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687.v #26	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.u ##26	ENSGT00940000155817.a.a #27	ENSGT00440000038603.n	ENSGT00390000017491.s.a.a.e #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Capuchin	MODERN SPECIES	39	ARNTL (ENSCCAG00000027938)	BTBD10 (ENSCCAG00000035534)	PTH (ENSCCAG00000032557)	ENSCCAG00000024494 #9	SPON1 (ENSCCAG00000035761) #10	ENSCCAG00000022670	RRAS2 (ENSCCAG00000036972) #11	ENSCCAG00000031612	COPB1 (ENSCCAG00000024190) #13	PSMA1 (ENSCCAG00000032886) #14	PDE3B (ENSCCAG00000006518) #17	ENSCCAG00000035274	CYP2R1 (ENSCCAG00000020089) #18	ENSCCAG00000022131 #21	CALCB (ENSCCAG00000036279) #21	INSC (ENSCCAG00000028591) #22	SOX6 (ENSCCAG00000034832) #24	ENSCCAG00000035901	ENSCCAG00000037894 ##26	PLEKHA7 (ENSCCAG00000030437) #27	ENSCCAG00000031641	RPS13 (ENSCCAG00000022959) #29	PIK3C2A (ENSCCAG00000034614) #30	NUCB2 (ENSCCAG00000029832) #31	KCNJ11 (ENSCCAG00000019232) #32	ABCC8 (ENSCCAG00000029653) #33	USH1C (ENSCCAG00000030798) #34	OTOG (ENSCCAG00000027583) #35	MYOD1 (ENSCCAG00000036433) #36	KCNC1 (ENSCCAG00000033090) #37	SERGEF (ENSCCAG00000037352)
Bolivian squirrel monkey	MODERN SPECIES	42	BMAL1 (ENSSBOG00000031375)	ENSSBOG00000032795	PTH (ENSSBOG00000031787)	ENSSBOG00000032346 #9	SPON1 (ENSSBOG00000033038) #10	ENSSBOG00000014032	RRAS2 (ENSSBOG00000031627) ##11	ENSSBOG00000016009	COPB1 (ENSSBOG00000034691) #13	ENSSBOG00000034107 #14	PDE3B (ENSSBOG00000022041) #17	ENSSBOG00000020446	CYP2R1 (ENSSBOG00000025157) #18	ENSSBOG00000032369 #21	CALCB (ENSSBOG00000034921) #21	INSC (ENSSBOG00000010393) #22	SOX6 (ENSSBOG00000032558) #24	C11orf58 (ENSSBOG00000024393) #26	PLEKHA7 (ENSSBOG00000035289) #27	ENSSBOG00000029329	RPS13 (ENSSBOG00000031967) #29	PIK3C2A (ENSSBOG00000020550) #30	NUCB2 (ENSSBOG00000022407) #31	KCNJ11 (ENSSBOG00000016143) #32	ABCC8 (ENSSBOG00000021007) #33	USH1C (ENSSBOG00000030041) #34	OTOG (ENSSBOG00000031057) #35	MYOD1 (ENSSBOG00000032168) #36	KCNC1 (ENSSBOG00000032934) #37	SERGEF (ENSSBOG00000021636)	TPH1 (ENSSBOG00000021704)
Mas night monkey	MODERN SPECIES	830	TEAD1 (ENSANAG00000027729)	RASSF10 (ENSANAG00000016577)	BMAL1 (ENSANAG00000007619)	BTBD10 (ENSANAG00000019763)	PTH (ENSANAG00000023657)	ENSANAG00000023814 #9	SPON1 (ENSANAG00000021897) #10	RRAS2 (ENSANAG00000020797) #11	COPB1 (ENSANAG00000022440) #13	ENSANAG00000024281 #14	PDE3B (ENSANAG00000021980) #17	ENSANAG00000029911	CYP2R1 (ENSANAG00000029148) #18	ENSANAG00000028771 #21	CALCB (ENSANAG00000026224) #21	INSC (ENSANAG00000024858) #22	ENSANAG00000028387	SOX6 (ENSANAG00000029702) #24	C11orf58 (ENSANAG00000027455) ##26	PLEKHA7 (ENSANAG00000015437) #27	ENSANAG00000028185	RPS13 (ENSANAG00000026703) #29	ENSANAG00000029343	PIK3C2A (ENSANAG00000036198) #30	NUCB2 (ENSANAG00000033132) #31	NCR3LG1 (ENSANAG00000021049)	KCNJ11 (ENSANAG00000017323) #32	ABCC8 (ENSANAG00000034619) #33	USH1C (ENSANAG00000033372) #34	OTOG (ENSANAG00000035931) #35	MYOD1 (ENSANAG00000032905) #36
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a.i	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a.i	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Hominidae	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a.i	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	20	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a.i	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328.p.a #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00390000017871.a	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.w.a #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a.i	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328.o #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00390000017871.a	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.w.a #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Pan	ANCESTRAL SPECIES	1	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a.i	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328.p.a #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00390000017871.a	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.w.a #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Chimpanzee	MODERN SPECIES	2	RASSF10 (ENSPTRG00000047122)	ARNTL (ENSPTRG00000003376)	BTBD10 (ENSPTRG00000003377)	PTH (ENSPTRG00000003379)	FAR1 (ENSPTRG00000024190) #9	SPON1 (ENSPTRG00000043466) #10	RRAS2 (ENSPTRG00000003383) #11	COPB1 (ENSPTRG00000003384) #13	PSMA1 (ENSPTRG00000003385) #14	ENSPTRG00000050651	PDE3B (ENSPTRG00000003386) #17	ENSPTRG00000049147	CYP2R1 (ENSPTRG00000003388) #18	CALCA (ENSPTRG00000003389) #20	CALCB (ENSPTRG00000003390) #21	INSC (ENSPTRG00000003391) #22	SOX6 (ENSPTRG00000003393) #24	ENSPTRG00000043419	C11H11orf58 (ENSPTRG00000044196) #26	PLEKHA7 (ENSPTRG00000003396) #27	RPS13 (ENSPTRG00000044626) #29	PIK3C2A (ENSPTRG00000003399) #30	NUCB2 (ENSPTRG00000003400) #31	NCR3LG1 (ENSPTRG00000003401)	KCNJ11 (ENSPTRG00000028707) #32	ABCC8 (ENSPTRG00000003403) #33	ENSPTRG00000048594	USH1C (ENSPTRG00000003404) #34	OTOG (ENSPTRG00000003405) #35	MYOD1 (ENSPTRG00000003406) #36	KCNC1 (ENSPTRG00000003407) #37
Bonobo	MODERN SPECIES	2	TEAD1 (ENSPPAG00000035086)	RASSF10 (ENSPPAG00000003028)	BMAL1 (ENSPPAG00000013788)	BTBD10 (ENSPPAG00000017421)	PTH (ENSPPAG00000029173)	FAR1 (ENSPPAG00000032349) #9	SPON1 (ENSPPAG00000038730) #10	ENSPPAG00000042848 #11	COPB1 (ENSPPAG00000037818) #13	ENSPPAG00000009245 #14	ENSPPAG00000026084	PDE3B (ENSPPAG00000001811) #17	CYP2R1 (ENSPPAG00000042738) #18	CALCA (ENSPPAG00000040307) #20	CALCB (ENSPPAG00000039474) #21	INSC (ENSPPAG00000039229) #22	SOX6 (ENSPPAG00000037103) #24	ENSPPAG00000035221	C11orf58 (ENSPPAG00000035335) #26	PLEKHA7 (ENSPPAG00000041353) #27	ENSPPAG00000039874 #29	PIK3C2A (ENSPPAG00000039156) #30	NUCB2 (ENSPPAG00000041653) #31	NCR3LG1 (ENSPPAG00000038825)	KCNJ11 (ENSPPAG00000016577) #32	ABCC8 (ENSPPAG00000026555) #33	ENSPPAG00000035879	USH1C (ENSPPAG00000028696) #34	OTOG (ENSPPAG00000027834) #35	MYOD1 (ENSPPAG00000036477) #36	KCNC1 (ENSPPAG00000006765) #37
Human	MODERN SPECIES	2	PARVA (ENSG00000197702)	TEAD1 (ENSG00000187079)	RASSF10 (ENSG00000189431)	BMAL1 (ENSG00000133794)	BTBD10 (ENSG00000148925)	PTH (ENSG00000152266)	FAR1 (ENSG00000197601) #9	SPON1 (ENSG00000262655) #10	RRAS2 (ENSG00000133818) #11	COPB1 (ENSG00000129083) #13	PSMA1 (ENSG00000129084) #14	PDE3B (ENSG00000152270) #17	CYP2R1 (ENSG00000186104) #18	CALCB (ENSG00000175868) #21	CALCA (ENSG00000110680) #20	INSC (ENSG00000188487) #22	SOX6 (ENSG00000110693) #24	C11orf58 (ENSG00000110696) #26	PLEKHA7 (ENSG00000166689) #27	RPS13 (ENSG00000110700) #29	PIK3C2A (ENSG00000011405) #30	NUCB2 (ENSG00000070081) #31	NCR3LG1 (ENSG00000188211)	KCNJ11 (ENSG00000187486) #32	ABCC8 (ENSG00000006071) #33	USH1C (ENSG00000006611) #34	OTOG (ENSG00000188162) #35	MYOD1 (ENSG00000129152) #36	KCNC1 (ENSG00000129159) #37	SERGEF (ENSG00000129158)	TPH1 (ENSG00000129167)
Gorilla	MODERN SPECIES	2	TEAD1 (ENSGGOG00000037572)	RASSF10 (ENSGGOG00000024816)	BMAL1 (ENSGGOG00000013211)	BTBD10 (ENSGGOG00000000246)	PTH (ENSGGOG00000024281)	FAR1 (ENSGGOG00000001180) #9	SPON1 (ENSGGOG00000012110) #10	RRAS2 (ENSGGOG00000004759) #11	COPB1 (ENSGGOG00000001412) #13	ENSGGOG00000001416 #14	ENSGGOG00000024577	PDE3B (ENSGGOG00000006999) #17	CYP2R1 (ENSGGOG00000004022) #18	CALCA (ENSGGOG00000014148) #20	CALCB (ENSGGOG00000000799) #21	INSC (ENSGGOG00000002992) #22	SOX6 (ENSGGOG00000010884) #24	ENSGGOG00000022363	PLEKHA7 (ENSGGOG00000006435) #27	RPS13 (ENSGGOG00000007450) #29	PIK3C2A (ENSGGOG00000011040) #30	NUCB2 (ENSGGOG00000005914) #31	NCR3LG1 (ENSGGOG00000022788)	KCNJ11 (ENSGGOG00000003700) #32	ABCC8 (ENSGGOG00000015972) #33	ENSGGOG00000039510	USH1C (ENSGGOG00000016001) #34	OTOG (ENSGGOG00000016024) #35	MYOD1 (ENSGGOG00000008222) #36	KCNC1 (ENSGGOG00000015717) #37	SERGEF (ENSGGOG00000000685)
Orangutan	MODERN SPECIES	2	TEAD1 (ENSPPYG00000003475)	RASSF10 (ENSPPYG00000003474)	BMAL1 (ENSPPYG00000003473)	BTBD10 (ENSPPYG00000003472)	PTH (ENSPPYG00000003471)	FAR1 (ENSPPYG00000003470) #9	SPON1 (ENSPPYG00000003469) #10	ENSPPYG00000025912 #11	COPB1 (ENSPPYG00000003467) #13	PSMA1 (ENSPPYG00000003466) #14	PDE3B (ENSPPYG00000003464) #17	CYP2R1 (ENSPPYG00000003463) #18	ENSPPYG00000041260 #20	CALCA (ENSPPYG00000025911) #20	CALCB (ENSPPYG00000003461) #21	INSC (ENSPPYG00000003460) #22	SOX6 (ENSPPYG00000003459) #24	C11H11orf58 (ENSPPYG00000003458) #26	PLEKHA7 (ENSPPYG00000003457) #27	ENSPPYG00000036022 ##29	PIK3C2A (ENSPPYG00000003455) #30	NUCB2 (ENSPPYG00000003454) #31	NCR3LG1 (ENSPPYG00000003453)	KCNJ11 (ENSPPYG00000003452) #32	ABCC8 (ENSPPYG00000004122) #33	USH1C (ENSPPYG00000003451) #34	OTOG (ENSPPYG00000003450) #35	MYOD1 (ENSPPYG00000003449) #36	KCNC1 (ENSPPYG00000003448) #37	SERGEF (ENSPPYG00000003446)	TPH1 (ENSPPYG00000003445)
Gibbon	MODERN SPECIES	5	TEAD1 (ENSNLEG00000017672)	BMAL1 (ENSNLEG00000017674)	BTBD10 (ENSNLEG00000017691)	PTH (ENSNLEG00000017694)	FAR1 (ENSNLEG00000017695) #9	SPON1 (ENSNLEG00000017696) #10	RRAS2 (ENSNLEG00000017700) #11	COPB1 (ENSNLEG00000017703) #13	PSMA1 (ENSNLEG00000028235) #14	ENSNLEG00000017707	ENSNLEG00000035459	ENSNLEG00000017708 #17	CYP2R1 (ENSNLEG00000017710) #18	ENSNLEG00000035959	CALCB (ENSNLEG00000017711) #21	INSC (ENSNLEG00000017712) #22	SOX6 (ENSNLEG00000017716) #24	ENSNLEG00000028745	ENSNLEG00000031503	C11orf58 (ENSNLEG00000029419) #26	PLEKHA7 (ENSNLEG00000017721) #27	RPS13 (ENSNLEG00000029985) #29	PIK3C2A (ENSNLEG00000017723) #30	ENSNLEG00000035283	NUCB2 (ENSNLEG00000017726) #31	NCR3LG1 (ENSNLEG00000034781)	KCNJ11 (ENSNLEG00000036200) #32	ABCC8 (ENSNLEG00000017729) #33	ENSNLEG00000034870	USH1C (ENSNLEG00000017735) #34	OTOG (ENSNLEG00000017737) #35
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00910000147143	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a.i	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a.a.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00910000147143	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a.i	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a.a.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT01050000244941.A.q.a.a	ENSGT00940000157523	ENSGT00390000007975.a.i	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000009405.b.c.a.a.d.a.b	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00910000148600	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a.a.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Cercopithecinae_b	ANCESTRAL SPECIES	27	ENSGT01050000244941.A.q.a.a	ENSGT00940000157523	ENSGT00390000007975.a.i	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000009405.b.c.a.a.d.a.b	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00910000148600	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a.a.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Cercopithecinae_d	ANCESTRAL SPECIES	99	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a.i	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000009405.b.c.a.a.d.a.b	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00910000148600	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a.a.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Sooty mangabey	MODERN SPECIES	235	ENSCATG00000031725	BMAL1 (ENSCATG00000014877)	BTBD10 (ENSCATG00000020038)	PTH (ENSCATG00000011856)	FAR1 (ENSCATG00000039474) #9	SPON1 (ENSCATG00000031426) #10	RRAS2 (ENSCATG00000043382) #11	ENSCATG00000005978	COPB1 (ENSCATG00000040822) #13	PSMA1 (ENSCATG00000014932) #14	PDE3B (ENSCATG00000038221) #17	CYP2R1 (ENSCATG00000039518) #18	ENSCATG00000042154	CALCA (ENSCATG00000027244) #20	CALCB (ENSCATG00000041190) #21	INSC (ENSCATG00000035904) #22	SOX6 (ENSCATG00000040489) #24	ENSCATG00000031030	C11orf58 (ENSCATG00000045243) #26	PLEKHA7 (ENSCATG00000040434) #27
Drill	MODERN SPECIES	1308						SPON1 (ENSMLEG00000032226) #10	RRAS2 (ENSMLEG00000040288) #11	ENSMLEG00000035246	ENSMLEG00000006364	COPB1 (ENSMLEG00000043293) #13	PSMA1 (ENSMLEG00000030594) #14	PDE3B (ENSMLEG00000043892) #17	CYP2R1 (ENSMLEG00000023125) #18	CALCA (ENSMLEG00000044126) #20	CALCB (ENSMLEG00000037476) #21	INSC (ENSMLEG00000035631) #22	SOX6 (ENSMLEG00000035320) #24	ENSMLEG00000033673
Olive baboon	MODERN SPECIES	3	RASSF10 (ENSPANG00000039259)	ENSPANG00000006030	BMAL1 (ENSPANG00000006538)	BTBD10 (ENSPANG00000010377)	PTH (ENSPANG00000021901)	FAR1 (ENSPANG00000026208) #9	SPON1 (ENSPANG00000002502) #10	RRAS2 (ENSPANG00000009252) #11	ENSPANG00000049552	ENSPANG00000002060	COPB1 (ENSPANG00000019450) #13	PSMA1 (ENSPANG00000016448) #14	PDE3B (ENSPANG00000014364) #17	CYP2R1 (ENSPANG00000005224) #18	CALCA (ENSPANG00000038842) #20	INSC (ENSPANG00000010410) #22	SOX6 (ENSPANG00000025558) #24	ENSPANG00000013057	ENSPANG00000044173	C11orf58 (ENSPANG00000004515) #26	PLEKHA7 (ENSPANG00000018146) #27	ENSPANG00000033142 #29	PIK3C2A (ENSPANG00000015538) #30	NUCB2 (ENSPANG00000002503) #31	KCNJ11 (ENSPANG00000016190) #32	ABCC8 (ENSPANG00000007182) #33	USH1C (ENSPANG00000020256) #34	OTOG (ENSPANG00000010378) #35	ENSPANG00000045614	MYOD1 (ENSPANG00000011946) #36	KCNC1 (ENSPANG00000015328) #37
Macaca	ANCESTRAL SPECIES	2	ENSGT01050000244941.A.q.a.a	ENSGT00940000157523	ENSGT00390000007975.a.i	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000009405.b.c.a.a.d.a.b	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00910000148600	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a.a.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Pig-tailed macaque	MODERN SPECIES	131	ENSMNEG00000028664	BMAL1 (ENSMNEG00000044126)	BTBD10 (ENSMNEG00000039532)	PTH (ENSMNEG00000045093)	FAR1 (ENSMNEG00000027354) #9	SPON1 (ENSMNEG00000035429) #10	RRAS2 (ENSMNEG00000040502) #11	ENSMNEG00000017091	COPB1 (ENSMNEG00000041177) #13	PSMA1 (ENSMNEG00000005235) #14	PDE3B (ENSMNEG00000045013) #17	CYP2R1 (ENSMNEG00000036249) #18	ENSMNEG00000015626	CALCA (ENSMNEG00000041856) #20	CALCB (ENSMNEG00000033056) #21	INSC (ENSMNEG00000041648) #22	SOX6 (ENSMNEG00000015482) #24	ENSMNEG00000020819	C11orf58 (ENSMNEG00000039475) #26	PLEKHA7 (ENSMNEG00000042391) #27	ENSMNEG00000043614 #29	PIK3C2A (ENSMNEG00000031943) #30	NUCB2 (ENSMNEG00000036376) #31	NCR3LG1 (ENSMNEG00000000053)	KCNJ11 (ENSMNEG00000023626) #32	ABCC8 (ENSMNEG00000018051) #33	USH1C (ENSMNEG00000012077) #34	OTOG (ENSMNEG00000040832) #35	MYOD1 (ENSMNEG00000044032) #36	KCNC1 (ENSMNEG00000029034) #37	SERGEF (ENSMNEG00000043939)
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a.i	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000009405.b.c.a.a.d.a.b	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000153272.a.b.o.b.a	ENSGT00980000199842.D.c.b	ENSGT00960000191653	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.s.a.a.a #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000056904	ENSMFAG00000048535	BTBD10 (ENSMFAG00000000120)	PTH (ENSMFAG00000032854)	FAR1 (ENSMFAG00000033108) #9	SPON1 (ENSMFAG00000045029) #10	RRAS2 (ENSMFAG00000003904) #11	ENSMFAG00000030330	COPB1 (ENSMFAG00000041022) #13	PSMA1 (ENSMFAG00000036829) #14	ENSMFAG00000056009	PDE3B (ENSMFAG00000043764) #17	CYP2R1 (ENSMFAG00000002337) #18	CALCA (ENSMFAG00000041791) #20	CALCB (ENSMFAG00000054288) #21	INSC (ENSMFAG00000036736) #22	ENSMFAG00000056897	SOX6 (ENSMFAG00000026936) #24	ENSMFAG00000060735	ENSMFAG00000051873	ENSMFAG00000065082	ENSMFAG00000059859	ENSMFAG00000047457	C11orf58 (ENSMFAG00000041653) #26	PLEKHA7 (ENSMFAG00000000110) #27	ENSMFAG00000032124 #29	PIK3C2A (ENSMFAG00000033659) #30	NUCB2 (ENSMFAG00000038074) #31	NCR3LG1 (ENSMFAG00000043862)	KCNJ11 (ENSMFAG00000010384) #32	ABCC8 (ENSMFAG00000035952) #33
Rhesus	MODERN SPECIES	5	TEAD1 (ENSMMUG00000010875)	RASSF10 (ENSMMUG00000031015)	ARNTL (ENSMMUG00000009690)	BTBD10 (ENSMMUG00000009695)	PTH (ENSMMUG00000054213)	FAR1 (ENSMMUG00000011990) #9	SPON1 (ENSMMUG00000021914) #10	RRAS2 (ENSMMUG00000056680) #11	ENSMMUG00000060926	COPB1 (ENSMMUG00000016444) #13	PSMA1 (ENSMMUG00000016446) #14	PDE3B (ENSMMUG00000000759) #17	CYP2R1 (ENSMMUG00000000761) #18	CALCA (ENSMMUG00000062674) #20	CALCB (ENSMMUG00000020245) #21	INSC (ENSMMUG00000020246) #22	SOX6 (ENSMMUG00000002753) #24	ENSMMUG00000055212	ENSMMUG00000064582	C14H11orf58 (ENSMMUG00000017626) #26	ENSMMUG00000060216 ##25	PLEKHA7 (ENSMMUG00000017628) #27	RPS13 (ENSMMUG00000022547) #29	PIK3C2A (ENSMMUG00000022548) #30	NUCB2 (ENSMMUG00000005895) #31	ABCC8 (ENSMMUG00000023581) #33	USH1C (ENSMMUG00000023582) #34	OTOG (ENSMMUG00000023586) #35	MYOD1 (ENSMMUG00000006400) #36	KCNC1 (ENSMMUG00000006403) #37	SERGEF (ENSMMUG00000006405)
Vervet Monkey	MODERN SPECIES		TEAD1 (ENSCSAG00000004676)	RASSF10 (ENSCSAG00000019327)	BMAL1 (ENSCSAG00000004681)	BTBD10 (ENSCSAG00000004684)	PTH (ENSCSAG00000004688)	FAR1 (ENSCSAG00000004693) #9	SPON1 (ENSCSAG00000004699) #10	RRAS2 (ENSCSAG00000004707) #11	ENSCSAG00000019326	COPB1 (ENSCSAG00000004715) #13	ENSCSAG00000004718 #14	PDE3B (ENSCSAG00000004722) #17	CYP2R1 (ENSCSAG00000004727) #18	CALCA (ENSCSAG00000004733) #20	CALCB (ENSCSAG00000004739) #21	INSC (ENSCSAG00000004745) #22	SOX6 (ENSCSAG00000004751) #24	ENSCSAG00000019325	C11orf58 (ENSCSAG00000004755) #26	PLEKHA7 (ENSCSAG00000004758) #27	ENSCSAG00000004762 #29	PIK3C2A (ENSCSAG00000004784) #30	NUCB2 (ENSCSAG00000004802) #31	NCR3LG1 (ENSCSAG00000004804)	KCNJ11 (ENSCSAG00000019324) #32	ABCC8 (ENSCSAG00000004854) #33	USH1C (ENSCSAG00000004871) #34	OTOG (ENSCSAG00000004909) #35	MYOD1 (ENSCSAG00000004934) #36	KCNC1 (ENSCSAG00000004936) #37	SERGEF (ENSCSAG00000004946)
Rhinopithecus	ANCESTRAL SPECIES	436						ENSGT00940000153889.e.b.b	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000164241	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24
Black snub-nosed monkey	MODERN SPECIES	687	BTBD10 (ENSRBIG00000029469)	PTH (ENSRBIG00000021610)	FAR1 (ENSRBIG00000044909) #9	SPON1 (ENSRBIG00000026984) #10	ENSRBIG00000029894	RRAS2 (ENSRBIG00000033953) #11	ENSRBIG00000037045	ENSRBIG00000002418	ENSRBIG00000025999	COPB1 (ENSRBIG00000042522) #13	PSMA1 (ENSRBIG00000037598) #14	PDE3B (ENSRBIG00000033238) #17	CYP2R1 (ENSRBIG00000038224) #18	CALCA (ENSRBIG00000040435) #20	CALCB (ENSRBIG00000037886) #21	INSC (ENSRBIG00000038579) #22	SOX6 (ENSRBIG00000029047) #24
Golden snub-nosed monkey	MODERN SPECIES	3151															CALCB (ENSRROG00000010632) #21	INSC (ENSRROG00000030900) #22	SOX6 (ENSRROG00000000083) #24
Tarsier	MODERN SPECIES	6147						FAR1 (ENSTSYG00000003576) #9	SPON1 (ENSTSYG00000006292) #10	RRAS2 (ENSTSYG00000030276) #11	COPB1 (ENSTSYG00000003836) #13	PSMA1 (ENSTSYG00000003869) #14	PDE3B (ENSTSYG00000002819) #17	CYP2R1 (ENSTSYG00000005816) #18	ENSTSYG00000028581	CALCA (ENSTSYG00000037546) #20	CALCB (ENSTSYG00000002844) #21	INSC (ENSTSYG00000010938) #22
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b
Lemuriformes	ANCESTRAL SPECIES	16	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b
Mouse lemur	MODERN SPECIES	27	ENSMICG00000036945	ENSMICG00000001229	BTBD10 (ENSMICG00000001232)	PTH (ENSMICG00000042670)	ENSMICG00000036333	FAR1 (ENSMICG00000035920) #9	SPON1 (ENSMICG00000013787) #10	ENSMICG00000044590	RRAS2 (ENSMICG00000026746) #11	COPB1 (ENSMICG00000010919) #13	ENSMICG00000010934 #14	PDE3B (ENSMICG00000037786) #17	CYP2R1 (ENSMICG00000031499) #18	CALCA (ENSMICG00000036545) #20	CALCB (ENSMICG00000044384) #21	INSC (ENSMICG00000008907) #22	SOX6 (ENSMICG00000027413) #24	ENSMICG00000027883 #26	PLEKHA7 (ENSMICG00000003710) #27	ENSMICG00000031241 ##29	PIK3C2A (ENSMICG00000003718) #30	ENSMICG00000037789	NUCB2 (ENSMICG00000005512) #31	KCNJ11 (ENSMICG00000005520) #32	ABCC8 (ENSMICG00000005522) #33	USH1C (ENSMICG00000005547) #34	OTOG (ENSMICG00000005555) #35	MYOD1 (ENSMICG00000005566) #36	KCNC1 (ENSMICG00000005569) #37	SERGEF (ENSMICG00000005579)	TPH1 (ENSMICG00000005586)
Lemuriformes_a	ANCESTRAL SPECIES	24	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b
Greater bamboo lemur	MODERN SPECIES	708															CALCB (ENSPSMG00000008444) #21	INSC (ENSPSMG00000008493) #22	SOX6 (ENSPSMG00000008573) #24	ENSPSMG00000008607 #26	PLEKHA7 (ENSPSMG00000008661) #27	ENSPSMG00000008669 ##29	PIK3C2A (ENSPSMG00000008738) #30	NUCB2 (ENSPSMG00000008836) #31	KCNJ11 (ENSPSMG00000008899) #32	ABCC8 (ENSPSMG00000009601) #33	USH1C (ENSPSMG00000010622) #34	OTOG (ENSPSMG00000010669) #35	MYOD1 (ENSPSMG00000010680) #36	KCNC1 (ENSPSMG00000010686) #37	SERGEF (ENSPSMG00000010715)	TPH1 (ENSPSMG00000010741)	SAAL1 (ENSPSMG00000010764)
Coquerels sifaka	MODERN SPECIES	591	ENSPCOG00000022798	PARVA (ENSPCOG00000025574)	TEAD1 (ENSPCOG00000025108)	BMAL1 (ENSPCOG00000023193)	BTBD10 (ENSPCOG00000021543)	PTH (ENSPCOG00000011541)	FAR1 (ENSPCOG00000027389) #9	SPON1 (ENSPCOG00000018088) #10	RRAS2 (ENSPCOG00000016892) #11	COPB1 (ENSPCOG00000022546) #13	ENSPCOG00000017306 #14	PDE3B (ENSPCOG00000022666) #17	CYP2R1 (ENSPCOG00000017738) #18	ENSPCOG00000014163 #21	CALCB (ENSPCOG00000025246) #21	INSC (ENSPCOG00000024807) #22	SOX6 (ENSPCOG00000008289) #24	C11orf58 (ENSPCOG00000012109) #26	ENSPCOG00000016080	PLEKHA7 (ENSPCOG00000020850) #27	ENSPCOG00000024432 ##29	PIK3C2A (ENSPCOG00000009463) #30	ENSPCOG00000015410 #31	KCNJ11 (ENSPCOG00000009073) #32	ABCC8 (ENSPCOG00000018480) #33	USH1C (ENSPCOG00000024567) #34	OTOG (ENSPCOG00000023596) #35	MYOD1 (ENSPCOG00000028149) #36	KCNC1 (ENSPCOG00000028118) #37	SERGEF (ENSPCOG00000015228)	TPH1 (ENSPCOG00000022787)
Bushbaby	MODERN SPECIES	116	PARVA (ENSOGAG00000003339)	TEAD1 (ENSOGAG00000011380)	RASSF10 (ENSOGAG00000030263)	ENSOGAG00000027834	BMAL1 (ENSOGAG00000000736)	BTBD10 (ENSOGAG00000000739)	PTH (ENSOGAG00000000740)	FAR1 (ENSOGAG00000005064) #9	RRAS2 (ENSOGAG00000027655) #11	COPB1 (ENSOGAG00000011612) #13	PSMA1 (ENSOGAG00000011622) #14	PDE3B (ENSOGAG00000017127) #17	CYP2R1 (ENSOGAG00000006278) #18	ENSOGAG00000017129 #20	ENSOGAG00000009052 #20	INSC (ENSOGAG00000000628) #22	SOX6 (ENSOGAG00000005358) #24	C11orf58 (ENSOGAG00000025335) #26	PLEKHA7 (ENSOGAG00000013719) #27	RPS13 (ENSOGAG00000002128) ##29	PIK3C2A (ENSOGAG00000002129) #30	ENSOGAG00000028675	NUCB2 (ENSOGAG00000006094) #31	ENSOGAG00000032142	KCNJ11 (ENSOGAG00000029803) #32	ABCC8 (ENSOGAG00000006103) #33	USH1C (ENSOGAG00000006113) #34	OTOG (ENSOGAG00000033908) #35	MYOD1 (ENSOGAG00000029784) #36	KCNC1 (ENSOGAG00000011185) #37	SERGEF (ENSOGAG00000011195)
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Glires	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Rodentia	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d.o.a.b #9	ENSGT00390000006367.d.o.b #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328.x #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687.g #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Hystricomorpha_a	ANCESTRAL SPECIES	47	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d.o.a.b #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328.x #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267.p #21	ENSGT00940000156267.o #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687.g #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b
Hystricomorpha_b	ANCESTRAL SPECIES	5	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d.o.a.b #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328.x #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267.p #21	ENSGT00940000156267.o #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00940000171813	ENSGT00390000000687.g #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Long-tailed chinchilla	MODERN SPECIES	121	TEAD1 (ENSCLAG00000016810)	RASSF10 (ENSCLAG00000018114)	BMAL1 (ENSCLAG00000017239)	BTBD10 (ENSCLAG00000017057)	PTH (ENSCLAG00000017158)	ENSCLAG00000017019 #9	SPON1 (ENSCLAG00000017261) #10	ENSCLAG00000016764	RRAS2 (ENSCLAG00000017168) #11	COPB1 (ENSCLAG00000015805) #13	PSMA1 (ENSCLAG00000016167) #14	PDE3B (ENSCLAG00000016912) #17	CYP2R1 (ENSCLAG00000016825) #18	ENSCLAG00000016987 #21	ENSCLAG00000017178 #21	INSC (ENSCLAG00000017184) #22	SOX6 (ENSCLAG00000016824) #24	ENSCLAG00000016704	C11orf58 (ENSCLAG00000016801) #26	PLEKHA7 (ENSCLAG00000017010) #27	ENSCLAG00000017194 ##29	PIK3C2A (ENSCLAG00000016983) #30	NUCB2 (ENSCLAG00000015316) #31	KCNJ11 (ENSCLAG00000018089) #32	ABCC8 (ENSCLAG00000017273) #33	USH1C (ENSCLAG00000017070) #34	OTOG (ENSCLAG00000017199) #35	MYOD1 (ENSCLAG00000016988) #36	KCNC1 (ENSCLAG00000017208) #37	SERGEF (ENSCLAG00000016819)	TPH1 (ENSCLAG00000017233)
Degu	MODERN SPECIES	108	ENSODEG00000007743	BMAL1 (ENSODEG00000008489)	BTBD10 (ENSODEG00000009711)	PTH (ENSODEG00000009020)	FAR1 (ENSODEG00000008134) #9	SPON1 (ENSODEG00000010476) #10	ENSODEG00000010498 #11	ENSODEG00000008175	COPB1 (ENSODEG00000008339) #13	ENSODEG00000009349 #14	PDE3B (ENSODEG00000008884) #17	CYP2R1 (ENSODEG00000008305) #18	ENSODEG00000010275 #21	ENSODEG00000019671	ENSODEG00000009712 #21	INSC (ENSODEG00000008548) #22	SOX6 (ENSODEG00000008432) #24	ENSODEG00000009867	PLEKHA7 (ENSODEG00000010004) #27	ENSODEG00000009296 ##29	PIK3C2A (ENSODEG00000009662) #30	NUCB2 (ENSODEG00000009138) #31	ENSODEG00000008817	ENSODEG00000009435	KCNJ11 (ENSODEG00000019745) #32	ABCC8 (ENSODEG00000009121) #33	USH1C (ENSODEG00000009175) #34	OTOG (ENSODEG00000012735) #35	MYOD1 (ENSODEG00000009827) #36	KCNC1 (ENSODEG00000009078) #37	TPH1 (ENSODEG00000009357)
Guinea pig	MODERN SPECIES	67	ENSCPOG00000032772	TEAD1 (ENSCPOG00000001830)	RASSF10 (ENSCPOG00000003185)	BMAL1 (ENSCPOG00000008795)	ENSCPOG00000024984	PTH (ENSCPOG00000003894)	ENSCPOG00000002654 #9	SPON1 (ENSCPOG00000001095) #10	RRAS2 (ENSCPOG00000033943) #11	COPB1 (ENSCPOG00000015221) #13	PSMA1 (ENSCPOG00000015226) #14	PDE3B (ENSCPOG00000014511) #17	CYP2R1 (ENSCPOG00000015305) #18	ENSCPOG00000009939 #21	ENSCPOG00000034508 #21	INSC (ENSCPOG00000009748) #22	SOX6 (ENSCPOG00000012090) #24	C11orf58 (ENSCPOG00000038571) #26	PLEKHA7 (ENSCPOG00000006974) #27	RPS13 (ENSCPOG00000000023) ##29	PIK3C2A (ENSCPOG00000000024) #30	NUCB2 (ENSCPOG00000023342) #31	KCNJ11 (ENSCPOG00000004142) #32	ABCC8 (ENSCPOG00000001255) #33	USH1C (ENSCPOG00000001261) #34	OTOG (ENSCPOG00000002809) #35	MYOD1 (ENSCPOG00000021351) #36	KCNC1 (ENSCPOG00000011387) #37	SERGEF (ENSCPOG00000000907)	TPH1 (ENSCPOG00000000911)	SAAL1 (ENSCPOG00000006107)
Naked mole-rat female	MODERN SPECIES	24	BMAL1 (ENSHGLG00000011181)	ENSHGLG00000017597	PTH (ENSHGLG00000008594)	ENSHGLG00000034622	ENSHGLG00000033619	FAR1 (ENSHGLG00000009052) #9	ENSHGLG00000004770	SPON1 (ENSHGLG00000010146) #10	ENSHGLG00000005525 #11	COPB1 (ENSHGLG00000006967) #13	PSMA1 (ENSHGLG00000008245) #14	PDE3B (ENSHGLG00000004812) #17	CYP2R1 (ENSHGLG00000006296) #18	CALCA (ENSHGLG00000049679) #20	CALCB (ENSHGLG00000007698) #21	INSC (ENSHGLG00000012231) #22	ENSHGLG00000032536	ENSHGLG00000014554	SOX6 (ENSHGLG00000013237) #24	ENSHGLG00000010951 #26	PLEKHA7 (ENSHGLG00000004474) #27	ENSHGLG00000005727	PIK3C2A (ENSHGLG00000007454) #30	ENSHGLG00000037844	ENSHGLG00000004738 #31	ENSHGLG00000036103	KCNJ11 (ENSHGLG00000037268) #32	ABCC8 (ENSHGLG00000008993) #33	USH1C (ENSHGLG00000010904) #34	ENSHGLG00000006891 #35	MYOD1 (ENSHGLG00000004984) #36
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b
Marmotini	ANCESTRAL SPECIES	22	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b
Marmotini_b	ANCESTRAL SPECIES	61	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT01090000260040.a.a.a.r
Squirrel	MODERN SPECIES	128	PARVA (ENSSTOG00000004676)	TEAD1 (ENSSTOG00000013115)	RASSF10 (ENSSTOG00000028823)	BMAL1 (ENSSTOG00000022144)	BTBD10 (ENSSTOG00000005753)	PTH (ENSSTOG00000026619)	FAR1 (ENSSTOG00000006190) #9	SPON1 (ENSSTOG00000029199) #10	RRAS2 (ENSSTOG00000022169) #11	COPB1 (ENSSTOG00000006213) #13	PSMA1 (ENSSTOG00000006270) #14	PDE3B (ENSSTOG00000016111) #17	CYP2R1 (ENSSTOG00000016403) #18	CALCA (ENSSTOG00000003844) #20	CALCB (ENSSTOG00000012372) #21	INSC (ENSSTOG00000012376) #22	SOX6 (ENSSTOG00000013609) #24	C11orf58 (ENSSTOG00000001419) #26	PLEKHA7 (ENSSTOG00000001423) #27	ENSSTOG00000008996 ##29	ENSSTOG00000031973	PIK3C2A (ENSSTOG00000009188) #30	ENSSTOG00000031872	NUCB2 (ENSSTOG00000001896) #31	KCNJ11 (ENSSTOG00000025616) #32	ABCC8 (ENSSTOG00000001904) #33	USH1C (ENSSTOG00000001933) #34	OTOG (ENSSTOG00000025595) #35	MYOD1 (ENSSTOG00000011556) #36	KCNC1 (ENSSTOG00000019519) #37	SERGEF (ENSSTOG00000003395)
Arctic ground squirrel	MODERN SPECIES	206										COPB1 (ENSUPAG00010005744) #13	PSMA1 (ENSUPAG00010005766) #14	PDE3B (ENSUPAG00010005774) #17	CYP2R1 (ENSUPAG00010005791) #18	CALCA (ENSUPAG00010005812) #20	CALCB (ENSUPAG00010005825) #21	INSC (ENSUPAG00010005831) #22	SOX6 (ENSUPAG00010005850) #24	C11orf58 (ENSUPAG00010006090) #26	PLEKHA7 (ENSUPAG00010006111) #27	RPS13 (ENSUPAG00010006654) ##29	PIK3C2A (ENSUPAG00010006674) #30	ENSUPAG00010006717	NUCB2 (ENSUPAG00010006739) #31	KCNJ11 (ENSUPAG00010006778) #32	ABCC8 (ENSUPAG00010006784) #33	USH1C (ENSUPAG00010006868) #34	OTOG (ENSUPAG00010007511) #35	MYOD1 (ENSUPAG00010007585) #36	KCNC1 (ENSUPAG00010007591) #37	SERGEF (ENSUPAG00010007606)	TPH1 (ENSUPAG00010007637)
Alpin marmot	MODERN SPECIES	3	BMAL1 (ENSMMMG00000002502)	BTBD10 (ENSMMMG00000002760)	PTH (ENSMMMG00000002796)	FAR1 (ENSMMMG00000002814) #9	SPON1 (ENSMMMG00000002900) #10	ENSMMMG00000002936	ENSMMMG00000002944 #11	ENSMMMG00000002957 #11	ENSMMMG00000002961	COPB1 (ENSMMMG00000002978) #13	PSMA1 (ENSMMMG00000003002) #14	PDE3B (ENSMMMG00000003034) #17	CYP2R1 (ENSMMMG00000003218) #18	CALCA (ENSMMMG00000003285) #20	CALCB (ENSMMMG00000003306) #21	INSC (ENSMMMG00000003331) #22	SOX6 (ENSMMMG00000003398) #24	C11orf58 (ENSMMMG00000003760) #26	PLEKHA7 (ENSMMMG00000003770) #27	ENSMMMG00000003997 ##29	PIK3C2A (ENSMMMG00000004019) #30	ENSMMMG00000004134	ENSMMMG00000004174	NUCB2 (ENSMMMG00000004191) #31	KCNJ11 (ENSMMMG00000004222) #32	ABCC8 (ENSMMMG00000004227) #33	USH1C (ENSMMMG00000004314) #34	ENSMMMG00000004715 #35	MYOD1 (ENSMMMG00000004739) #36	KCNC1 (ENSMMMG00000004744) #37	ENSMMMG00000004750
Eurasian red squirrel	MODERN SPECIES	2	BMAL1 (ENSSVLG00005010226)	ENSSVLG00005010129	PTH (ENSSVLG00005010094)	FAR1 (ENSSVLG00005010034) #9	SPON1 (ENSSVLG00005009915) #10	ENSSVLG00005009856 #11	ENSSVLG00005009821 #13	PSMA1 (ENSSVLG00005009698) #14	ENSSVLG00005009657	ENSSVLG00005009633	ENSSVLG00005009603	PDE3B (ENSSVLG00005009340) #17	CYP2R1 (ENSSVLG00005009273) #18	CALCA (ENSSVLG00005009221) #20	CALCB (ENSSVLG00005009182) #21	INSC (ENSSVLG00005008947) #22	SOX6 (ENSSVLG00005008583) #24	ENSSVLG00005008507 #26	PLEKHA7 (ENSSVLG00005008253) #27	ENSSVLG00005008146 ##29	PIK3C2A (ENSSVLG00005007973) #30	ENSSVLG00005007915	NUCB2 (ENSSVLG00005007770) #31	KCNJ11 (ENSSVLG00005007700) #32	ABCC8 (ENSSVLG00005006593) #33	USH1C (ENSSVLG00005005925) #34	OTOG (ENSSVLG00005005330) #35	MYOD1 (ENSSVLG00005005222) #36	KCNC1 (ENSSVLG00005005188) #37	SERGEF (ENSSVLG00005005160)	TPH1 (ENSSVLG00005005094)
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Kangaroo rat	MODERN SPECIES	501							Far1 (ENSDORG00000004485) #9	Spon1 (ENSDORG00000003471) #10	Rras2 (ENSDORG00000028482) #11	Copb1 (ENSDORG00000001806) #13	Psma1 (ENSDORG00000009494) #14	Pde3b (ENSDORG00000016029) #17	Cyp2r1 (ENSDORG00000001470) #18	ENSDORG00000007871 #21	Calcb (ENSDORG00000015509) #21	Insc (ENSDORG00000015511) #22	Sox6 (ENSDORG00000013073) #24	1110004F10Rik (ENSDORG00000029283) #26	Plekha7 (ENSDORG00000013868) #27	Rps13 (ENSDORG00000002507) ##29	Pik3c2a (ENSDORG00000002510) #30	Nucb2 (ENSDORG00000009599) #31	Abcc8 (ENSDORG00000009602) #33	Ush1c (ENSDORG00000009605) #34	Otog (ENSDORG00000009610) #35	Myod1 (ENSDORG00000027063) #36	Kcnc1 (ENSDORG00000013230) #37	Sergef (ENSDORG00000013234)	ENSDORG00000013235	Saal1 (ENSDORG00000013616)	ENSDORG00000012937
Myomorpha	ANCESTRAL SPECIES	13	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Lesser Egyptian jerboa	MODERN SPECIES	43	Tead1 (ENSJJAG00000020173)	Rassf10 (ENSJJAG00000013526)	Arntl (ENSJJAG00000018760)	ENSJJAG00000021998	Pth (ENSJJAG00000020801)	Far1 (ENSJJAG00000023677) #9	Spon1 (ENSJJAG00000021081) #10	Rras2 (ENSJJAG00000023091) #11	Copb1 (ENSJJAG00000013738) #13	Psma1 (ENSJJAG00000016996) #14	Pde3b (ENSJJAG00000003122) #17	Cyp2r1 (ENSJJAG00000007428) #18	ENSJJAG00000009221	Calca (ENSJJAG00000007984) #20	Calcb (ENSJJAG00000009837) #21	Insc (ENSJJAG00000008221) #22	Sox6 (ENSJJAG00000019247) #24	ENSJJAG00000018380	ENSJJAG00000007100 #26	Plekha7 (ENSJJAG00000015908) #27	Rps13 (ENSJJAG00000014986) ##29	ENSJJAG00000001032	Pik3c2a (ENSJJAG00000022972) #30	Nucb2 (ENSJJAG00000016858) #31	Kcnj11 (ENSJJAG00000011720) #32	Abcc8 (ENSJJAG00000019120) #33	Ush1c (ENSJJAG00000023737) #34	ENSJJAG00000020712 #35	Myod1 (ENSJJAG00000022220) #36	Kcnc1 (ENSJJAG00000020413) #37	Sergef (ENSJJAG00000006549)
Muroidea	ANCESTRAL SPECIES	59	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31
Muroidea_A	ANCESTRAL SPECIES		ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.o.b.a ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e.d	ENSGT00940000157381	ENSGT00950000183198.c.a.b.a.b	ENSGT00940000154937	ENSGT00940000154776	ENSGT00940000163133	ENSGT00940000158939	ENSGT01050000244827.A	ENSGT00390000014520
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687.l #26	ENSGT01030000235062	ENSGT00390000000687.k.b #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.o.b.a ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e.d	ENSGT00940000157381	ENSGT00950000183198.c.a.b.a.b	ENSGT00940000154937	ENSGT00940000154776	ENSGT00940000163133	ENSGT00940000158939
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687.k.b #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.o.a ##29	ENSGT00390000017491.t.o.b.a ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000157381	ENSGT00950000183198.c.a.b.a.b	ENSGT00940000154937	ENSGT00940000154776	ENSGT00940000158939	ENSGT01050000244827.A	ENSGT00390000014520	ENSGT01050000244894.a.a.b
Golden Hamster	MODERN SPECIES	673	Tead1 (ENSMAUG00000016475)	Arntl (ENSMAUG00000009271)	Btbd10 (ENSMAUG00000013779)	Pth (ENSMAUG00000010728)	ENSMAUG00000006495	Far1 (ENSMAUG00000010126) #9	ENSMAUG00000019672 #10	ENSMAUG00000006080	ENSMAUG00000010226 #10	Rras2 (ENSMAUG00000018548) #11	ENSMAUG00000013937	Copb1 (ENSMAUG00000020925) #13	Cyp2r1 (ENSMAUG00000019753) #18	Calca (ENSMAUG00000001971) #20	Calcb (ENSMAUG00000018976) #21	Insc (ENSMAUG00000013925) #22	Sox6 (ENSMAUG00000006668) #24	ENSMAUG00000018341	Plekha7 (ENSMAUG00000021482) #27	ENSMAUG00000013319 ##29	Pik3c2a (ENSMAUG00000009052) #30	Nucb2 (ENSMAUG00000011875) #31	Xylt1 (ENSMAUG00000012923)	ENSMAUG00000019468	ENSMAUG00000016548	Arl6ip1 (ENSMAUG00000009929)	Smg1 (ENSMAUG00000000449)	Syt17 (ENSMAUG00000006809)	Itpripl2 (ENSMAUG00000004860)	Coq7 (ENSMAUG00000000411)	Tmc7 (ENSMAUG00000012457)
Chinese hamster chok1gshd	MODERN SPECIES	401	ENSCGRG00001021117	Pth (ENSCGRG00001000135)	Far1 (ENSCGRG00001015317) #9	Spon1 (ENSCGRG00001021186) #10	Rras2 (ENSCGRG00001010770) #11	ENSCGRG00001014592	Copb1 (ENSCGRG00001016852) #13	Psma1 (ENSCGRG00001018590) #14	Pde3b (ENSCGRG00001010130) #17	ENSCGRG00001000399	ENSCGRG00001007984	Cyp2r1 (ENSCGRG00001016255) #18	Calca (ENSCGRG00001021467) #20	ENSCGRG00001000446	Calcb (ENSCGRG00001001258) #21	Insc (ENSCGRG00001015851) #22	Sox6 (ENSCGRG00001012054) #24	1110004F10Rik (ENSCGRG00001010020) #26	Plekha7 (ENSCGRG00001017451) #27	Rps13 (ENSCGRG00001014781) ##29	Pik3c2a (ENSCGRG00001010280) #30	Nucb2 (ENSCGRG00001010623) #31	Xylt1 (ENSCGRG00001016229)	ENSCGRG00001009562	Arl6ip1 (ENSCGRG00001019524)	Smg1 (ENSCGRG00001015859)	ENSCGRG00001001728	Syt17 (ENSCGRG00001019155)	Itpripl2 (ENSCGRG00001007234)	Coq7 (ENSCGRG00001013605)	Tmc7 (ENSCGRG00001019083)
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687.l #26	ENSGT01030000235062	ENSGT00390000000687.k.b #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.o.b.a ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e.d	ENSGT00940000157381	ENSGT00950000183198.c.a.b.a.b	ENSGT00940000154937	ENSGT00940000154776	ENSGT00940000163133	ENSGT00940000158939
Northern American deer mouse	MODERN SPECIES		Tead1 (ENSPEMG00000008435)	Rassf10 (ENSPEMG00000006120)	ENSPEMG00000024980	Arntl (ENSPEMG00000011047)	Btbd10 (ENSPEMG00000010670)	Pth (ENSPEMG00000013697)	Far1 (ENSPEMG00000020800) #9	Spon1 (ENSPEMG00000013759) #10	Rras2 (ENSPEMG00000030965) #11	Copb1 (ENSPEMG00000015316) #13	Psma1 (ENSPEMG00000011421) #14	Pde3b (ENSPEMG00000017402) #17	Cyp2r1 (ENSPEMG00000016804) #18	Calca (ENSPEMG00000018008) #20	Calcb (ENSPEMG00000006071) #21	Insc (ENSPEMG00000009976) #22	ENSPEMG00000028916	ENSPEMG00000025150 #26	Plekha7 (ENSPEMG00000011588) #27	Rps13 (ENSPEMG00000029873) ##29	Pik3c2a (ENSPEMG00000022075) #30	Nucb2 (ENSPEMG00000022928) #31	ENSPEMG00000028007	Xylt1 (ENSPEMG00000010054)	Rps15a (ENSPEMG00000016922)	Arl6ip1 (ENSPEMG00000026142)	Smg1 (ENSPEMG00000017830)	ENSPEMG00000028498	Syt17 (ENSPEMG00000014675)	Itpripl2 (ENSPEMG00000006551)	Coq7 (ENSPEMG00000014474)
Prairie vole	MODERN SPECIES	16	Parva (ENSMOCG00000014591)	Tead1 (ENSMOCG00000010219)	Rassf10 (ENSMOCG00000009099)	Arntl (ENSMOCG00000010413)	Btbd10 (ENSMOCG00000011664)	Pth (ENSMOCG00000004314)	Far1 (ENSMOCG00000021238) #9	Spon1 (ENSMOCG00000013869) #10	Rras2 (ENSMOCG00000001879) #11	Copb1 (ENSMOCG00000007249) #13	Psma1 (ENSMOCG00000001230) #14	Pde3b (ENSMOCG00000014972) #17	Cyp2r1 (ENSMOCG00000015196) #18	Calca (ENSMOCG00000021156) #20	Calcb (ENSMOCG00000013740) #21	Insc (ENSMOCG00000020814) #22	Sox6 (ENSMOCG00000004816) #24	1110004F10Rik (ENSMOCG00000009144) #26	Plekha7 (ENSMOCG00000017575) #27	ENSMOCG00000019112 ##29	Pik3c2a (ENSMOCG00000019109) #30	Nucb2 (ENSMOCG00000006832) #31	Xylt1 (ENSMOCG00000021542)	ENSMOCG00000003481	Arl6ip1 (ENSMOCG00000018684)	Smg1 (ENSMOCG00000002552)	Syt17 (ENSMOCG00000012862)	Itpripl2 (ENSMOCG00000008783)	ENSMOCG00000004354	Tmc7 (ENSMOCG00000003450)	Tmc5 (ENSMOCG00000016126)
Murinae	ANCESTRAL SPECIES		ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.o.b.a ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000157381	ENSGT00950000183198.c.a.b.a.b	ENSGT00940000154937	ENSGT00940000154776	ENSGT00940000158939	ENSGT01050000244827.A	ENSGT00390000014520	ENSGT01050000244894.a.a.b	ENSGT01050000244894.b.a
Mus	ANCESTRAL SPECIES		ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.o.b.a ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000157381	ENSGT00950000183198.c.a.b.a.b	ENSGT00940000154937	ENSGT00940000154776	ENSGT00940000158939	ENSGT01050000244827.A	ENSGT00390000014520	ENSGT01050000244894.a.a.b	ENSGT01050000244894.b.a
Mus_A	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a.s	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.o.b.a ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000157381	ENSGT00950000183198.c.a.b.a.b	ENSGT00940000154937	ENSGT00940000154776	ENSGT00940000158939	ENSGT01050000244827.A	ENSGT00390000014520	ENSGT01050000244894.a.a.b	ENSGT01050000244894.b.a
Mus_B	ANCESTRAL SPECIES		ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a.s	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.o.b.a ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000157381	ENSGT00950000183198.c.a.b.a.b	ENSGT00940000154937	ENSGT00940000154776	ENSGT00940000158939	ENSGT01050000244827.A	ENSGT00390000014520	ENSGT01050000244894.a.a.b	ENSGT01050000244894.b.a
Mus_C	ANCESTRAL SPECIES	14	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a.s	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00960000193118	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.o.b.a ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000157381	ENSGT00950000183198.c.a.b.a.b	ENSGT00940000154937	ENSGT00940000154776	ENSGT00940000158939	ENSGT01050000244827.A	ENSGT00390000014520	ENSGT01050000244894.a.a.b	ENSGT01050000244894.b.a
spretus	MODERN SPECIES	16	Tead1 (MGP_SPRETEiJ_G0031452)	Rassf10 (MGP_SPRETEiJ_G0031453)	Arntl (MGP_SPRETEiJ_G0031454)	Btbd10 (MGP_SPRETEiJ_G0031455)	Pth (MGP_SPRETEiJ_G0031456)	Far1 (MGP_SPRETEiJ_G0031457) #9	MGP_SPRETEiJ_G0031458	Spon1 (MGP_SPRETEiJ_G0031459) #10	Rras2 (MGP_SPRETEiJ_G0031460) #11	Copb1 (MGP_SPRETEiJ_G0031461) #13	Psma1 (MGP_SPRETEiJ_G0031462) #14	Pde3b (MGP_SPRETEiJ_G0031463) #17	Cyp2r1 (MGP_SPRETEiJ_G0031464) #18	Calca (MGP_SPRETEiJ_G0031465) #20	Calcb (MGP_SPRETEiJ_G0031466) #21	Insc (MGP_SPRETEiJ_G0031467) #22	Sox6 (MGP_SPRETEiJ_G0031468) #24	MGP_SPRETEiJ_G0031469 #26	Plekha7 (MGP_SPRETEiJ_G0031470) #27	Rps13 (MGP_SPRETEiJ_G0031471) ##29	Pik3c2a (MGP_SPRETEiJ_G0031472) #30	Nucb2 (MGP_SPRETEiJ_G0031473) #31	Xylt1 (MGP_SPRETEiJ_G0031474)	MGP_SPRETEiJ_G0031475	Arl6ip1 (MGP_SPRETEiJ_G0031476)	Smg1 (MGP_SPRETEiJ_G0031477)	Syt17 (MGP_SPRETEiJ_G0031478)	Itpripl2 (MGP_SPRETEiJ_G0031479)	MGP_SPRETEiJ_G0031480	Tmc7 (MGP_SPRETEiJ_G0031481)	MGP_SPRETEiJ_G0031482
Steppe mouse	MODERN SPECIES	3369	Arntl (ENSMSIG00000028665)	Btbd10 (ENSMSIG00000028709)	Pth (ENSMSIG00000028748)	ENSMSIG00000028759	Far1 (ENSMSIG00000028764) #9	ENSMSIG00000028777	ENSMSIG00000028778	Spon1 (ENSMSIG00000028779) #10	Rras2 (ENSMSIG00000028796) #11	Copb1 (ENSMSIG00000028801) #13	Psma1 (ENSMSIG00000028812) #14	Pde3b (ENSMSIG00000028820) #17	Cyp2r1 (ENSMSIG00000028834) #18	ENSMSIG00000028838 #20	Calcb (ENSMSIG00000028843) #21	Insc (ENSMSIG00000028853) #22
Mouse	MODERN SPECIES	16	Parva (ENSMUSG00000030770)	Tead1 (ENSMUSG00000055320)	Rassf10 (ENSMUSG00000098132)	Arntl (ENSMUSG00000055116)	Btbd10 (ENSMUSG00000038187)	Pth (ENSMUSG00000059077)	Far1 (ENSMUSG00000030759) #9	Spon1 (ENSMUSG00000038156) #10	Rras2 (ENSMUSG00000055723) #11	Copb1 (ENSMUSG00000030754) #13	Psma1 (ENSMUSG00000030751) #14	Pde3b (ENSMUSG00000030671) #17	Cyp2r1 (ENSMUSG00000030670) #18	Calca (ENSMUSG00000030669) #20	Calcb (ENSMUSG00000030666) #21	Insc (ENSMUSG00000048782) #22	Sox6 (ENSMUSG00000051910) #24	1110004F10Rik (ENSMUSG00000030663) #26	Plekha7 (ENSMUSG00000045659) #27	Rps13 (ENSMUSG00000090862) ##29	Pik3c2a (ENSMUSG00000030660) #30	Nucb2 (ENSMUSG00000030659) #31	Xylt1 (ENSMUSG00000030657)	Rps15a (ENSMUSG00000008683)	Arl6ip1 (ENSMUSG00000030654)	Smg1 (ENSMUSG00000030655)	Syt17 (ENSMUSG00000058420)	Itpripl2 (ENSMUSG00000095115)	Coq7 (ENSMUSG00000030652)	Tmc7 (ENSMUSG00000042246)	Tmc5 (ENSMUSG00000030650)
Ryukyu mouse	MODERN SPECIES	16	Tead1 (MGP_CAROLIEiJ_G0030337)	Rassf10 (MGP_CAROLIEiJ_G0030338)	Arntl (MGP_CAROLIEiJ_G0030339)	Btbd10 (MGP_CAROLIEiJ_G0030340)	Pth (MGP_CAROLIEiJ_G0030341)	MGP_CAROLIEiJ_G0030342 #9	MGP_CAROLIEiJ_G0030343	Spon1 (MGP_CAROLIEiJ_G0030344) #10	Rras2 (MGP_CAROLIEiJ_G0030345) #11	Copb1 (MGP_CAROLIEiJ_G0030346) #13	Psma1 (MGP_CAROLIEiJ_G0030347) #14	Pde3b (MGP_CAROLIEiJ_G0030348) #17	Cyp2r1 (MGP_CAROLIEiJ_G0030349) #18	Calca (MGP_CAROLIEiJ_G0030350) #20	Calcb (MGP_CAROLIEiJ_G0030351) #21	Insc (MGP_CAROLIEiJ_G0030352) #22	Sox6 (MGP_CAROLIEiJ_G0030353) #24	1110004F10Rik (MGP_CAROLIEiJ_G0030354) #26	Plekha7 (MGP_CAROLIEiJ_G0030355) #27	Rps13 (MGP_CAROLIEiJ_G0030356) ##29	MGP_CAROLIEiJ_G0030357 #30	Nucb2 (MGP_CAROLIEiJ_G0030358) #31	Xylt1 (MGP_CAROLIEiJ_G0030359)	MGP_CAROLIEiJ_G0030360	Arl6ip1 (MGP_CAROLIEiJ_G0030361)	Smg1 (MGP_CAROLIEiJ_G0030362)	Syt17 (MGP_CAROLIEiJ_G0030363)	Itpripl2 (MGP_CAROLIEiJ_G0030364)	MGP_CAROLIEiJ_G0030365	Tmc7 (MGP_CAROLIEiJ_G0030366)	Tmc5 (MGP_CAROLIEiJ_G0030367)
Shrew mouse	MODERN SPECIES		Parva (MGP_PahariEiJ_G0013548)	Tead1 (MGP_PahariEiJ_G0013549)	Rassf10 (MGP_PahariEiJ_G0013550)	Arntl (MGP_PahariEiJ_G0013551)	Btbd10 (MGP_PahariEiJ_G0013552)	Pth (MGP_PahariEiJ_G0013553)	Far1 (MGP_PahariEiJ_G0013554) #9	Spon1 (MGP_PahariEiJ_G0013555) #10	Rras2 (MGP_PahariEiJ_G0013556) #11	Copb1 (MGP_PahariEiJ_G0013557) #13	Psma1 (MGP_PahariEiJ_G0013558) #14	Pde3b (MGP_PahariEiJ_G0013559) #17	Cyp2r1 (MGP_PahariEiJ_G0013560) #18	Calca (MGP_PahariEiJ_G0013561) #20	Calcb (MGP_PahariEiJ_G0013562) #21	Insc (MGP_PahariEiJ_G0013563) #22	Sox6 (MGP_PahariEiJ_G0013564) #24	1110004F10Rik (MGP_PahariEiJ_G0013565) #26	Plekha7 (MGP_PahariEiJ_G0013566) #27	Rps13 (MGP_PahariEiJ_G0013567) ##29	Pik3c2a (MGP_PahariEiJ_G0013568) #30	Nucb2 (MGP_PahariEiJ_G0013569) #31	Xylt1 (MGP_PahariEiJ_G0013570)	Rps15a (MGP_PahariEiJ_G0013571)	Arl6ip1 (MGP_PahariEiJ_G0013572)	Smg1 (MGP_PahariEiJ_G0013573)	Syt17 (MGP_PahariEiJ_G0013574)	Itpripl2 (MGP_PahariEiJ_G0013575)	MGP_PahariEiJ_G0013576	Tmc7 (MGP_PahariEiJ_G0013577)	Tmc5 (MGP_PahariEiJ_G0013578)
Rat	MODERN SPECIES		ENSRNOG00000065112	Bmal1 (ENSRNOG00000014448)	Btbd10 (ENSRNOG00000014341)	Pth (ENSRNOG00000014318)	Far1 (ENSRNOG00000013176) #9	Spon1 (ENSRNOG00000058003) #10	Rras2 (ENSRNOG00000012258) #11	AABR07005506.1 (ENSRNOG00000025122)	Copb1 (ENSRNOG00000057623) #13	Psma1 (ENSRNOG00000011745) #14	LOC691427 (ENSRNOG00000066701)	Pde3b (ENSRNOG00000011417) #17	LOC102548890 (ENSRNOG00000062071)	Cyp2r1 (ENSRNOG00000011367) #18	Calca (ENSRNOG00000011130) #20	Insc (ENSRNOG00000024712) #22	Sox6 (ENSRNOG00000020514) #24	C1h11orf58 (ENSRNOG00000053659) #26	Plekha7 (ENSRNOG00000024602) #27	ENSRNOG00000070857	Rps13 (ENSRNOG00000068955) ##29	Pik3c2a (ENSRNOG00000020479) #30	LOC100911093 (ENSRNOG00000020477)	Nucb2 (ENSRNOG00000020456) #31	LOC100912427 (ENSRNOG00000030807)	Xylt1 (ENSRNOG00000056658)	Rps15a (ENSRNOG00000018320)	Arl6ip1 (ENSRNOG00000017751)	Smg1 (ENSRNOG00000047386)	Syt17 (ENSRNOG00000017136)	Itpripl2 (ENSRNOG00000069633)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1662	Parva (ENSNGAG00000022660)	Tead1 (ENSNGAG00000023367)	Rassf10 (ENSNGAG00000023204)	Arntl (ENSNGAG00000015200)	Btbd10 (ENSNGAG00000023695)	Pth (ENSNGAG00000023725)	Far1 (ENSNGAG00000024267) #9	Spon1 (ENSNGAG00000020103) #10	Rras2 (ENSNGAG00000001129) #11	Copb1 (ENSNGAG00000021457) #13	Psma1 (ENSNGAG00000023475) #14	Pde3b (ENSNGAG00000023861) #17	Cyp2r1 (ENSNGAG00000022618) #18	Calca (ENSNGAG00000016407) #20	Calcb (ENSNGAG00000023192) #21	Insc (ENSNGAG00000024094) #22	Sox6 (ENSNGAG00000007557) #24	1110004F10Rik (ENSNGAG00000022996) #26	Plekha7 (ENSNGAG00000022048) #27	ENSNGAG00000017845 ##29	Pik3c2a (ENSNGAG00000016271) #30	Nucb2 (ENSNGAG00000016698) #31
Lagomorpha	ANCESTRAL SPECIES	72	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22
Rabbit	MODERN SPECIES		RASSF10 (ENSOCUG00000026389)	BTBD10 (ENSOCUG00000005952)	BMAL1 (ENSOCUG00000005940)	PTH (ENSOCUG00000005469)	FAR1 (ENSOCUG00000004336) #9	SPON1 (ENSOCUG00000011350) #10	RRAS2 (ENSOCUG00000011362) #11	ENSOCUG00000033417	COPB1 (ENSOCUG00000000432) #13	PSMA1 (ENSOCUG00000000439) #14	PDE3B (ENSOCUG00000007719) #17	CYP2R1 (ENSOCUG00000021933) #18	CALCA (ENSOCUG00000002452) #20	ENSOCUG00000021599	CALCB (ENSOCUG00000003076) #21	INSC (ENSOCUG00000003080) #22	PTPN5 (ENSOCUG00000009923)	ENSOCUG00000008648	ENSOCUG00000015709	ENSOCUG00000028073	MGRG2 (ENSOCUG00000034538)	ENSOCUG00000014949	ZDHHC13 (ENSOCUG00000004469)	CSRP3 (ENSOCUG00000004480)	E2F8 (ENSOCUG00000004485)	NAV2 (ENSOCUG00000007597)	DBX1 (ENSOCUG00000007615)	HTATIP2 (ENSOCUG00000000749)	PRMT3 (ENSOCUG00000000750)	SLC6A5 (ENSOCUG00000000757)	NELL1 (ENSOCUG00000000761)
Pika	MODERN SPECIES	3620															CALCB (ENSOPRG00000001566) #21	INSC (ENSOPRG00000001575) #22
Tree shrew	MODERN SPECIES	4792																INSC (ENSTBEG00000002438) #22
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00940000162876 #20	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000175801	ENSGT00390000017491.s.b ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00940000162876 #20	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000175801	ENSGT00390000017491.s.b ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000166205.b	ENSGT00940000166205.a	ENSGT00940000156267 #21	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Cetacea	ANCESTRAL SPECIES	4	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267.db.b #21	ENSGT00940000166205.b	ENSGT00940000166205.a.e	ENSGT00940000156267.db.a #21	ENSGT00940000167380	ENSGT00940000167952	ENSGT00940000156267.eb #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.r ##29	ENSGT00940000157813 #30	ENSGT00940000157251.hb	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267.db.b #21	ENSGT00940000166205.a.e	ENSGT00940000156267.db.a #21	ENSGT00940000156267.eb #21	ENSGT00940000167952	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.r ##29	ENSGT00940000157813 #30	ENSGT00940000157251.hb	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267.db.b #21	ENSGT00940000166205.a.e	ENSGT00940000156267.db.a #21	ENSGT00940000156267.eb #21	ENSGT00940000167952	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.r ##29	ENSGT00940000157813 #30	ENSGT00940000157251.hb	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Dolphin	MODERN SPECIES	2066															CALCB (ENSTTRG00000011898) #21	INSC (ENSTTRG00000011901) #22
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328.cb #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000153169.A.b.b.a.a.a.b.l	ENSGT00390000000378.d.b.gb	ENSGT00940000158305 #18	ENSGT00940000156267.db.b #21	ENSGT00940000166205.a.e	ENSGT00940000156267.db.a #21	ENSGT00940000156267.eb #21	ENSGT00940000167952	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.r ##29	ENSGT00940000157813 #30	ENSGT00940000157251.hb	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00950000182922.a.a.a.b.a.b.a.b.a	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328.cb #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000153169.A.b.b.a.a.a.b.l	ENSGT00390000000378.d.b.gb	ENSGT00940000158305 #18	ENSGT00940000156267.db.b #21	ENSGT00940000166205.a.e	ENSGT00940000167952	ENSGT00940000166205.b	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00390000018086.y.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.r ##29	ENSGT00940000157813 #30	ENSGT00940000157251.hb	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Narwhal	MODERN SPECIES	314	ENSMMNG00015020752	FAR1 (ENSMMNG00015020761) #9	SPON1 (ENSMMNG00015020782) #10	ENSMMNG00015020802 #11	COPB1 (ENSMMNG00015020824) #13	PSMA1 (ENSMMNG00015020868) #14	PDE3B (ENSMMNG00015020953) #17	ENSMMNG00015021034	ENSMMNG00015021043	CYP2R1 (ENSMMNG00015021059) #18	ENSMMNG00015021083 #21	ENSMMNG00015021104	ENSMMNG00015021119	ENSMMNG00015021124	ENSMMNG00015021136	INSC (ENSMMNG00015021164) #22	ENSMMNG00015021215	SOX6 (ENSMMNG00015021242) #24	C11orf58 (ENSMMNG00015021280) #26	PLEKHA7 (ENSMMNG00015021305) #27	RPS13 (ENSMMNG00015021335) ##29	PIK3C2A (ENSMMNG00015021358) #30	ENSMMNG00015021368	NUCB2 (ENSMMNG00015021400) #31	ENSMMNG00015021437	KCNJ11 (ENSMMNG00015021442) #32	ABCC8 (ENSMMNG00015021473) #33	USH1C (ENSMMNG00015021503) #34	OTOG (ENSMMNG00015021531) #35	MYOD1 (ENSMMNG00015021563) #36	KCNC1 (ENSMMNG00015021571) #37
Beluga whale	MODERN SPECIES	32	ENSDLEG00000005799	FAR1 (ENSDLEG00000005790) #9	SPON1 (ENSDLEG00000005782) #10	RRAS2 (ENSDLEG00000005779) #11	COPB1 (ENSDLEG00000005761) #13	PSMA1 (ENSDLEG00000005746) #14	ENSDLEG00000005736	ENSDLEG00000005733	PDE3B (ENSDLEG00000005717) #17	CYP2R1 (ENSDLEG00000005681) #18	ENSDLEG00000005674 #21	ENSDLEG00000005668	ENSDLEG00000005660	ENSDLEG00000005645	ENSDLEG00000005632 #21	INSC (ENSDLEG00000005606) #22	ENSDLEG00000005557	SOX6 (ENSDLEG00000005509) #24	CUNH11orf58 (ENSDLEG00000005498) #26	PLEKHA7 (ENSDLEG00000005386) #27	RPS13 (ENSDLEG00000005358) ##29	ENSDLEG00000020962	PIK3C2A (ENSDLEG00000020912) #30	NUCB2 (ENSDLEG00000020854) #31	ENSDLEG00000020840	KCNJ11 (ENSDLEG00000020835) #32	ABCC8 (ENSDLEG00000016659) #33	USH1C (ENSDLEG00000016116) #34	OTOG (ENSDLEG00000015797) #35	MYOD1 (ENSDLEG00000015755) #36	KCNC1 (ENSDLEG00000015743) #37
Vaquita	MODERN SPECIES	19	PTH (ENSPSNG00000005298)	ENSPSNG00000005319	FAR1 (ENSPSNG00000005352) #9	SPON1 (ENSPSNG00000005398) #10	ENSPSNG00000005427 #11	COPB1 (ENSPSNG00000005475) #13	PSMA1 (ENSPSNG00000005548) #14	PDE3B (ENSPSNG00000005620) #17	ENSPSNG00000005706	ENSPSNG00000005725	CYP2R1 (ENSPSNG00000005748) #18	ENSPSNG00000005789 #21	ENSPSNG00000005826	ENSPSNG00000005847 #21	ENSPSNG00000005882 #21	INSC (ENSPSNG00000005971) #22	SOX6 (ENSPSNG00000006212) #24	C11orf58 (ENSPSNG00000006414) #26	PLEKHA7 (ENSPSNG00000006504) #27	PIK3C2A (ENSPSNG00000006633) #30	ENSPSNG00000006740	NUCB2 (ENSPSNG00000006795) #31	ENSPSNG00000006848	KCNJ11 (ENSPSNG00000006886) #32	ABCC8 (ENSPSNG00000007231) #33	USH1C (ENSPSNG00000008836) #34	OTOG (ENSPSNG00000009133) #35	MYOD1 (ENSPSNG00000009194) #36	KCNC1 (ENSPSNG00000009240) #37	SERGEF (ENSPSNG00000009362)	TPH1 (ENSPSNG00000009426)
Sperm whale	MODERN SPECIES	7	BTBD10 (ENSPCTG00005011536)	PTH (ENSPCTG00005011723)	FAR1 (ENSPCTG00005011756) #9	SPON1 (ENSPCTG00005011836) #10	RRAS2 (ENSPCTG00005012007) #11	COPB1 (ENSPCTG00005012104) #13	PSMA1 (ENSPCTG00005012167) #14	PDE3B (ENSPCTG00005012346) #17	ENSPCTG00005012691	ENSPCTG00005012726	CYP2R1 (ENSPCTG00005012742) #18	ENSPCTG00005012814 #21	ENSPCTG00005012901	ENSPCTG00005012923 #21	ENSPCTG00005012995 #21	INSC (ENSPCTG00005013109) #22	SOX6 (ENSPCTG00005013480) #24	C16H11orf58 (ENSPCTG00005013885) #26	ENSPCTG00005013965	PLEKHA7 (ENSPCTG00005014003) #27	RPS13 (ENSPCTG00005014477) ##29	ENSPCTG00005014567 ##29	PIK3C2A (ENSPCTG00005014624) #30	ENSPCTG00005015020	NUCB2 (ENSPCTG00005004244) #31	ENSPCTG00005004506	KCNJ11 (ENSPCTG00005004532) #32	ABCC8 (ENSPCTG00005004712) #33	USH1C (ENSPCTG00005006223) #34	OTOG (ENSPCTG00005006334) #35	MYOD1 (ENSPCTG00005006484) #36
Blue whale	MODERN SPECIES	19	ENSBMSG00010011043	SPON1 (ENSBMSG00010011058) #10	RRAS2 (ENSBMSG00010011072) #11	COPB1 (ENSBMSG00010011087) #13	PSMA1 (ENSBMSG00010011110) #14	PDE3B (ENSBMSG00010011135) #17	ENSBMSG00010011179	ENSBMSG00010011189	CYP2R1 (ENSBMSG00010011195) #18	ENSBMSG00010011210	ENSBMSG00010011225	ENSBMSG00010011235	ENSBMSG00010011247	ENSBMSG00010011256 #21	ENSBMSG00010011268	INSC (ENSBMSG00010011315) #22	SOX6 (ENSBMSG00010011468) #24	ENSBMSG00010011543	C11orf58 (ENSBMSG00010011553) #26	PLEKHA7 (ENSBMSG00010011591) #27	ENSBMSG00010011692 ##29	PIK3C2A (ENSBMSG00010011707) #30	ENSBMSG00010011741	NUCB2 (ENSBMSG00010011776) #31	ENSBMSG00010011920	KCNJ11 (ENSBMSG00010011930) #32	ABCC8 (ENSBMSG00010012014) #33	USH1C (ENSBMSG00010012539) #34	OTOG (ENSBMSG00010012712) #35	MYOD1 (ENSBMSG00010012778) #36	KCNC1 (ENSBMSG00010012786) #37
Pecora	ANCESTRAL SPECIES	7	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000166205.b	ENSGT00940000166205.a	ENSGT00940000156267 #21	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Yarkand deer	MODERN SPECIES		BTBD10 (ENSCHYG00000000026)	PTH (ENSCHYG00000000021)	FAR1 (ENSCHYG00000000016) #9	SPON1 (ENSCHYG00000000009) #10	RRAS2 (ENSCHYG00000000005) #11	COPB1 (ENSCHYG00000000002) #13	PSMA1 (ENSCHYG00000018665) #14	ENSCHYG00000018606	PDE3B (ENSCHYG00000018075) #17	ENSCHYG00000018022	CYP2R1 (ENSCHYG00000017908) #18	ENSCHYG00000017748	ENSCHYG00000017694	ENSCHYG00000017642 #21	ENSCHYG00000017547	INSC (ENSCHYG00000017107) #22	ENSCHYG00000017074	SOX6 (ENSCHYG00000016309) #24	C11orf58 (ENSCHYG00000016095) #26	PLEKHA7 (ENSCHYG00000015374) #27	ENSCHYG00000015259	PIK3C2A (ENSCHYG00000014721) #30	NUCB2 (ENSCHYG00000014573) #31	ENSCHYG00000014538	KCNJ11 (ENSCHYG00000014523) #32	ABCC8 (ENSCHYG00000013838) #33	USH1C (ENSCHYG00000013383) #34	OTOG (ENSCHYG00000013158) #35	MYOD1 (ENSCHYG00000013095) #36	KCNC1 (ENSCHYG00000013038) #37	SERGEF (ENSCHYG00000012902)
Percora_a	ANCESTRAL SPECIES	6	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000166205.b	ENSGT00940000166205.a	ENSGT00940000156267 #21	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.s.b ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Bovidae	ANCESTRAL SPECIES	6	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000166205.b	ENSGT00940000166205.a	ENSGT00940000156267 #21	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.s.b ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Caprinae	ANCESTRAL SPECIES	6	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00950000183010.a.a.a.b.a.a.a.a.a ##7	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000166205.b	ENSGT00940000166205.a	ENSGT00940000156267 #21	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.s.b ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Rambouillet Sheep	MODERN SPECIES	6	FAR1 (ENSOARG00020009547) #9	SPON1 (ENSOARG00020009467) #10	RRAS2 (ENSOARG00020009434) #11	COPB1 (ENSOARG00020009319) #13	PSMA1 (ENSOARG00020009114) #14	PDE3B (ENSOARG00020008382) #17	CYP2R1 (ENSOARG00020008229) #18	ENSOARG00020007898	CALCB (ENSOARG00020007826)	ENSOARG00020007797	ENSOARG00020007780 ##7	ENSOARG00020007755	ENSOARG00020007733	ENSOARG00020007716 #21	CALCA (ENSOARG00020007665)	INSC (ENSOARG00020007458) #22	SOX6 (ENSOARG00020007177) #24	HSP10 (ENSOARG00020007118)	C11orf58 (ENSOARG00020007043) #26	PLEKHA7 (ENSOARG00020006298) #27	ENSOARG00020006224	PIK3C2A (ENSOARG00020005921) #30	ENSOARG00020005854	NUCB2 (ENSOARG00020005797) #31	ENSOARG00020005772	KCNJ11 (ENSOARG00020005759) #32	ABCC8 (ENSOARG00020004289) #33	USH1C (ENSOARG00020004095) #34	OTOG (ENSOARG00020003321) #35	MYOD1 (ENSOARG00020003202) #36	KCNC1 (ENSOARG00020023195) #37
Goat	MODERN SPECIES	6	PTH (ENSCHIG00000007602)	FAR1 (ENSCHIG00000018043) #9	SPON1 (ENSCHIG00000024597) #10	RRAS2 (ENSCHIG00000021550) #11	ENSCHIG00000012272	COPB1 (ENSCHIG00000016260) #13	PSMA1 (ENSCHIG00000019700) #14	PDE3B (ENSCHIG00000009677) #17	CYP2R1 (ENSCHIG00000015003) #18	ENSCHIG00000021176	CRSP-1 (ENSCHIG00000016334)	CRSP-2 (ENSCHIG00000026890) #21	ENSCHIG00000016702	ENSCHIG00000017738	ENSCHIG00000021622	INSC (ENSCHIG00000006694) #22	SOX6 (ENSCHIG00000021925) #24	C11orf58 (ENSCHIG00000019685) #26	PLEKHA7 (ENSCHIG00000013421) #27	ENSCHIG00000003111	ENSCHIG00000023276 ##29	PIK3C2A (ENSCHIG00000015119) #30	ENSCHIG00000010858	NUCB2 (ENSCHIG00000025278) #31	KCNJ11 (ENSCHIG00000009617) #32	ABCC8 (ENSCHIG00000014117) #33	USH1C (ENSCHIG00000006681) #34	OTOG (ENSCHIG00000002155) #35	MYOD1 (ENSCHIG00000009793) #36	KCNC1 (ENSCHIG00000010620) #37	SERGEF (ENSCHIG00000016321)
Bovinae	ANCESTRAL SPECIES	21	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000166205.b	ENSGT00940000166205.a	ENSGT00940000156267 #21	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.s.b ##29	ENSGT00940000157813 #30	ENSGT00390000014320.l	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Bos	ANCESTRAL SPECIES	20	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a.b	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000166205.b	ENSGT00940000166205.a.c.a	ENSGT00940000156267 #21	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.s.b ##29	ENSGT00940000157813 #30	ENSGT00390000014320.l	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Bos_a	ANCESTRAL SPECIES	15	ENSGT00950000182959.b.b #36	ENSGT00940000157490 #35	ENSGT00950000183002.A #34	ENSGT00940000156626 #33	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000163348.e	ENSGT00390000001927.a #31	ENSGT00390000014320.l	ENSGT00940000157813 #30	ENSGT00390000017491.t.u.s.b ##29	ENSGT00940000155817.a.a #27	ENSGT00390000000687 #26	ENSGT00940000156433.B #24	ENSGT00940000167380	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000166205.a.c.b	ENSGT00940000166205.b	ENSGT00940000158305 #18	ENSGT00940000159336 #17	ENSGT00550000074855 #14	ENSGT00390000005270 #13	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a.b	ENSGT00940000155328 #11	ENSGT00940000154910.b.b #10	ENSGT00390000006367.d #9	ENSGT00390000018603	ENSGT00390000007975.a	ENSGT00940000157523	ENSGT00950000182839.A.d	ENSGT00950000182956.b.b.a.a.c.a.l
Domestic yak	MODERN SPECIES	4	ENSBGRG00000006837	FAR1 (ENSBGRG00000006854) #9	SPON1 (ENSBGRG00000006912) #10	RRAS2 (ENSBGRG00000007061) #11	ENSBGRG00000007156	COPB1 (ENSBGRG00000007177) #13	PSMA1 (ENSBGRG00000007331) #14	PDE3B (ENSBGRG00000007548) #17	ENSBGRG00000007979	CYP2R1 (ENSBGRG00000008015) #18	ENSBGRG00000008172	ENSBGRG00000008208	ENSBGRG00000008241	ENSBGRG00000008265 #21	ENSBGRG00000008327	INSC (ENSBGRG00000008459) #22	ENSBGRG00000008740	SOX6 (ENSBGRG00000008760) #24	C11orf58 (ENSBGRG00000009025) #26	PLEKHA7 (ENSBGRG00000009104) #27	ENSBGRG00000009189 ##29	PIK3C2A (ENSBGRG00000009254) #30	ENSBGRG00000009346	NUCB2 (ENSBGRG00000009502) #31	ENSBGRG00000009664	KCNJ11 (ENSBGRG00000009694) #32	ABCC8 (ENSBGRG00000009791) #33	USH1C (ENSBGRG00000010311) #34	OTOG (ENSBGRG00000011342) #35	KCNC1 (ENSBGRG00000012223) #37	SERGEF (ENSBGRG00000012334)
Wild yak	MODERN SPECIES	1353									ENSBMUG00000016878	ENSBMUG00000016862	ENSBMUG00000016859 #28	ENSBMUG00000016847	ENSBMUG00000016835	ENSBMUG00000016821 #21	ENSBMUG00000016815 #21	INSC (ENSBMUG00000016750) #22
Bos_b	ANCESTRAL SPECIES	19	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a.b	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000166205.b	ENSGT00940000166205.a.c.a	ENSGT00940000156267 #21	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.s.b ##29	ENSGT00940000157813 #30	ENSGT00390000014320.l	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Hybrid Bos Indicus	MODERN SPECIES	6	BMAL1 (ENSBIXG00005014420)	BTBD10 (ENSBIXG00005007269)	PTH (ENSBIXG00005014186)	FAR1 (ENSBIXG00005014143) #9	SPON1 (ENSBIXG00005001819) #10	RRAS2 (ENSBIXG00005014006) #11	ENSBIXG00005007265	COPB1 (ENSBIXG00005013907) #13	PSMA1 (ENSBIXG00005001733) #14	PDE3B (ENSBIXG00005013773) #17	CYP2R1 (ENSBIXG00005013677) #18	ENSBIXG00005000258	ENSBIXG00005013598	ENSBIXG00005006728 #21	ENSBIXG00005001650	INSC (ENSBIXG00005013489) #22	SOX6 (ENSBIXG00005013279) #24	ENSBIXG00005001497	C11orf58 (ENSBIXG00005013055) #26	PLEKHA7 (ENSBIXG00005012963) #27	ENSBIXG00005012803	ENSBIXG00005005701 ##29	PIK3C2A (ENSBIXG00005000289) #30	ENSBIXG00005012679	NUCB2 (ENSBIXG00005012643) #31	ENSBIXG00005012573	KCNJ11 (ENSBIXG00005012565) #32	ABCC8 (ENSBIXG00005000335) #33	USH1C (ENSBIXG00005012316) #34	OTOG (ENSBIXG00005012215) #35	MYOD1 (ENSBIXG00005001263) #36
Cow	MODERN SPECIES	6	ARNTL (ENSBTAG00000013029)	BTBD10 (ENSBTAG00000013033)	PTH (ENSBTAG00000019080)	FAR1 (ENSBTAG00000009061) #9	SPON1 (ENSBTAG00000009150) #10	RRAS2 (ENSBTAG00000011905) #11	ENSBTAG00000009359	COPB1 (ENSBTAG00000006556) #13	PSMA1 (ENSBTAG00000006564) #14	PDE3B (ENSBTAG00000005218) #17	CYP2R1 (ENSBTAG00000010419) #18	ENSBTAG00000048777	CALCB (ENSBTAG00000001516)	CALCA (ENSBTAG00000010089) #21	CALCB (ENSBTAG00000047380)	INSC (ENSBTAG00000032782) #22	SOX6 (ENSBTAG00000044185) #24	C15H11orf58 (ENSBTAG00000006755) #26	PLEKHA7 (ENSBTAG00000006974) #27	RPS13 (ENSBTAG00000040308) ##29	ENSBTAG00000032859	PIK3C2A (ENSBTAG00000004901) #30	NUCB2 (ENSBTAG00000017468) #31	NCR3LG1 (ENSBTAG00000050060)	KCNJ11 (ENSBTAG00000016170) #32	ABCC8 (ENSBTAG00000000983) #33	USH1C (ENSBTAG00000000986) #34	OTOG (ENSBTAG00000000987) #35	MYOD1 (ENSBTAG00000002216) #36	KCNC1 (ENSBTAG00000005424) #37	SERGEF (ENSBTAG00000005340)
American bison	MODERN SPECIES	3365	BMAL1 (ENSBBBG00000014351)	BTBD10 (ENSBBBG00000014389)	PTH (ENSBBBG00000003306)	FAR1 (ENSBBBG00000014419) #9	SPON1 (ENSBBBG00000014458) #10	RRAS2 (ENSBBBG00000003357) #11	ENSBBBG00000014492	COPB1 (ENSBBBG00000014540) #13	PSMA1 (ENSBBBG00000014567) #14	PDE3B (ENSBBBG00000014623) #17	ENSBBBG00000014655 #18	ENSBBBG00000014736	ENSBBBG00000007170	ENSBBBG00000003643 #21	ENSBBBG00000014818 #21	INSC (ENSBBBG00000001200) #22	SOX6 (ENSBBBG00000000977) #24	C11orf58 (ENSBBBG00000000901) #26	PLEKHA7 (ENSBBBG00000014936) #27	ENSBBBG00000003602 ##29	PIK3C2A (ENSBBBG00000003706) #30	ENSBBBG00000014999	NUCB2 (ENSBBBG00000015107) #31	KCNJ11 (ENSBBBG00000015136) #32	ABCC8 (ENSBBBG00000015495) #33	USH1C (ENSBBBG00000015646) #34	OTOG (ENSBBBG00000000781) #35	MYOD1 (ENSBBBG00000015770) #36	KCNC1 (ENSBBBG00000015796) #37	SERGEF (ENSBBBG00000015878)	TPH1 (ENSBBBG00000007903)
Siberian musk deer	MODERN SPECIES	1170					SPON1 (ENSMMSG00000012467) #10	ENSMMSG00000012497	RRAS2 (ENSMMSG00000012528) #11	COPB1 (ENSMMSG00000012559) #13	PSMA1 (ENSMMSG00000012625) #14	PDE3B (ENSMMSG00000012748) #17	CYP2R1 (ENSMMSG00000012865) #18	ENSMMSG00000012931	ENSMMSG00000012997	ENSMMSG00000013014 #21	ENSMMSG00000013030 #21	INSC (ENSMMSG00000013119) #22	ENSMMSG00000013203	SOX6 (ENSMMSG00000013238) #24	ENSMMSG00000013376	C11orf58 (ENSMMSG00000013390) #26	PLEKHA7 (ENSMMSG00000013421) #27	ENSMMSG00000013583 ##29	PIK3C2A (ENSMMSG00000013636) #30	NUCB2 (ENSMMSG00000013778) #31	ENSMMSG00000013898	KCNJ11 (ENSMMSG00000013924) #32	ABCC8 (ENSMMSG00000014012) #33	USH1C (ENSMMSG00000015357) #34	OTOG (ENSMMSG00000015691) #35	ENSMMSG00000015857	ENSMMSG00000015872
Camelidae	ANCESTRAL SPECIES	25	ENSGT00940000158780	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000166205.a	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b
Arabian camel	MODERN SPECIES	1	BMAL1 (ENSCDRG00005018014)	BTBD10 (ENSCDRG00005017807)	PTH (ENSCDRG00005017750)	FAR1 (ENSCDRG00005017647) #9	SPON1 (ENSCDRG00005017555) #10	ENSCDRG00005017514 #11	COPB1 (ENSCDRG00005017432) #13	PSMA1 (ENSCDRG00005017399) #14	ENSCDRG00005017368	PDE3B (ENSCDRG00005017202) #17	CYP2R1 (ENSCDRG00005017151) #18	ENSCDRG00005017138	ENSCDRG00005017126 #21	ENSCDRG00005017091 #21	ENSCDRG00005017047 #21	INSC (ENSCDRG00005016735) #22	SOX6 (ENSCDRG00005016113) #24	C11orf58 (ENSCDRG00005016004) #26	PLEKHA7 (ENSCDRG00005015761) #27	RPS13 (ENSCDRG00005015649) ##29	PIK3C2A (ENSCDRG00005015424) #30	NUCB2 (ENSCDRG00005015072) #31	KCNJ11 (ENSCDRG00005015019) #32	ABCC8 (ENSCDRG00005014728) #33	USH1C (ENSCDRG00005014521) #34	OTOG (ENSCDRG00005014084) #35	MYOD1 (ENSCDRG00005014006) #36	KCNC1 (ENSCDRG00005013940) #37	SERGEF (ENSCDRG00005013823)	TPH1 (ENSCDRG00005013726)	SAAL1 (ENSCDRG00005013646)
Alpaca	MODERN SPECIES	2531																INSC (ENSVPAG00000005733) #22
Suina	ANCESTRAL SPECIES	34	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000166205.a.a	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Pig	MODERN SPECIES	10	BMAL1 (ENSSSCG00000013397)	BTBD10 (ENSSSCG00000013395)	PTH (ENSSSCG00000013394)	FAR1 (ENSSSCG00000021170) #9	SPON1 (ENSSSCG00000013393) #10	ENSSSCG00000033786 #11	COPB1 (ENSSSCG00000013392) #13	PSMA1 (ENSSSCG00000013391) #14	PDE3B (ENSSSCG00000013388) #17	CYP2R1 (ENSSSCG00000013389) #18	ENSSSCG00000013390	ENSSSCG00000035649	ENSSSCG00000013387 #21	ENSSSCG00000013386 #21	ENSSSCG00000026512	INSC (ENSSSCG00000013385) #22	SOX6 (ENSSSCG00000034191) #24	C11orf58 (ENSSSCG00000040570) #26	PLEKHA7 (ENSSSCG00000013382) #27	RPS13 (ENSSSCG00000013381) ##29	PIK3C2A (ENSSSCG00000025406) #30	ENSSSCG00000013380 #31	KCNJ11 (ENSSSCG00000042162) #32	ABCC8 (ENSSSCG00000013378) #33	USH1C (ENSSSCG00000013377) #34	OTOG (ENSSSCG00000013376) #35	MYOD1 (ENSSSCG00000013375) #36	KCNC1 (ENSSSCG00000013374) #37	SERGEF (ENSSSCG00000042767)	TPH1 (ENSSSCG00000054840)	SAAL1 (ENSSSCG00000035393)
Chacoan peccary	MODERN SPECIES	919	RASSF10 (ENSCWAG00000012328)	BMAL1 (ENSCWAG00000011749)	BTBD10 (ENSCWAG00000019816)	PTH (ENSCWAG00000019804)	FAR1 (ENSCWAG00000019767) #9	SPON1 (ENSCWAG00000019714) #10	RRAS2 (ENSCWAG00000019696) #11	COPB1 (ENSCWAG00000019654) #13	PSMA1 (ENSCWAG00000019593) #14	PDE3B (ENSCWAG00000019464) #17	CYP2R1 (ENSCWAG00000019414) #18	ENSCWAG00000019380	ENSCWAG00000019355 #21	ENSCWAG00000019335 #21	ENSCWAG00000019318	INSC (ENSCWAG00000019215) #22	SOX6 (ENSCWAG00000018979) #24	C11orf58 (ENSCWAG00000018946) #26	PLEKHA7 (ENSCWAG00000018738) #27	ENSCWAG00000018676 ##29	PIK3C2A (ENSCWAG00000018580) #30	NUCB2 (ENSCWAG00000018398) #31	ENSCWAG00000018371	KCNJ11 (ENSCWAG00000018360) #32	ABCC8 (ENSCWAG00000016534) #33	USH1C (ENSCWAG00000016103) #34	OTOG (ENSCWAG00000015797) #35	MYOD1 (ENSCWAG00000015755) #36	KCNC1 (ENSCWAG00000015694) #37	SERGEF (ENSCWAG00000015651)	TPH1 (ENSCWAG00000015561)
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00940000162876 #20	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000175801	ENSGT00390000017491.s.b ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Carnivora	ANCESTRAL SPECIES	7	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855.u.a #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000175801	ENSGT00390000017491.s.b ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Caniformia	ANCESTRAL SPECIES	25	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855.u.a.a.b #14	ENSGT00550000074855.u.a.b #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000175801	ENSGT00390000017491.s.b ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855.u.a.a.b #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000166205	ENSGT00940000167380	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Ursidae	ANCESTRAL SPECIES	2	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855.u.a.a.b #14	ENSGT00550000074855.u.a.b #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00940000162876 #20	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Ursus	ANCESTRAL SPECIES	201														ENSGT00940000162876 #20	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626.k #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Polar bear	MODERN SPECIES	327														CALCA (ENSUMAG00000023404) #20	ENSUMAG00000023409	INSC (ENSUMAG00000023412) #22	SOX6 (ENSUMAG00000023422) #24	C11orf58 (ENSUMAG00000023447) #26	PLEKHA7 (ENSUMAG00000023454) #27	RPS13 (ENSUMAG00000023470) ##29	PIK3C2A (ENSUMAG00000023475) #30	NUCB2 (ENSUMAG00000023477) #31	ENSUMAG00000023479	KCNJ11 (ENSUMAG00000023484) #32	ABCC8 (ENSUMAG00000023493) #33	USH1C (ENSUMAG00000023605) #34	OTOG (ENSUMAG00000023622) #35	MYOD1 (ENSUMAG00000023628) #36	KCNC1 (ENSUMAG00000023629) #37	SERGEF (ENSUMAG00000023630)	TPH1 (ENSUMAG00000023633)
American black bear	MODERN SPECIES	1854															ENSUAMG00000023985	INSC (ENSUAMG00000023986) #22
Giant Panda	MODERN SPECIES	7	PARVA (ENSAMEG00000005997)	TEAD1 (ENSAMEG00000002258)	RASSF10 (ENSAMEG00000026953)	ENSAMEG00000029410	ENSAMEG00000002384	PTH (ENSAMEG00000002395)	FAR1 (ENSAMEG00000002333) #9	SPON1 (ENSAMEG00000002355) #10	RRAS2 (ENSAMEG00000002367) #11	COPB1 (ENSAMEG00000002370) #13	PSMA1 (ENSAMEG00000002440) #14	PDE3B (ENSAMEG00000002486) #17	CYP2R1 (ENSAMEG00000002507) #18	CALCB (ENSAMEG00000001579) #21	ENSAMEG00000015132	INSC (ENSAMEG00000015118) #22	SOX6 (ENSAMEG00000015112) #24	C11orf58 (ENSAMEG00000002845) #26	PLEKHA7 (ENSAMEG00000002856) #27	ENSAMEG00000002891	ENSAMEG00000002895 ##29	PIK3C2A (ENSAMEG00000002916) #30	NUCB2 (ENSAMEG00000002982) #31	ENSAMEG00000003021	KCNJ11 (ENSAMEG00000019510) #32	ABCC8 (ENSAMEG00000003026) #33	USH1C (ENSAMEG00000003181) #34	OTOG (ENSAMEG00000003146) #35	MYOD1 (ENSAMEG00000018197) #36	KCNC1 (ENSAMEG00000018198) #37	SERGEF (ENSAMEG00000028965)
Mustelinae	ANCESTRAL SPECIES	30	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855.u.a.a.b #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000166205	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Ferret	MODERN SPECIES	194	RASSF10 (ENSMPUG00000013121)	BMAL1 (ENSMPUG00000013135)	BTBD10 (ENSMPUG00000013145)	PTH (ENSMPUG00000013152)	FAR1 (ENSMPUG00000013158) #9	SPON1 (ENSMPUG00000013162) #10	RRAS2 (ENSMPUG00000013165) #11	COPB1 (ENSMPUG00000013192) #13	PSMA1 (ENSMPUG00000013199) #14	PDE3B (ENSMPUG00000013242) #17	ENSMPUG00000018995	CYP2R1 (ENSMPUG00000013250) #18	ENSMPUG00000013255	ENSMPUG00000013259 #20	CALCB (ENSMPUG00000013262) #21	INSC (ENSMPUG00000013267) #22	ENSMPUG00000013278	SOX6 (ENSMPUG00000013283) #24	C11orf58 (ENSMPUG00000013301) #26	PLEKHA7 (ENSMPUG00000013304) #27	ENSMPUG00000013316 ##29	PIK3C2A (ENSMPUG00000013343) #30	NUCB2 (ENSMPUG00000013355) #31	ENSMPUG00000013361	KCNJ11 (ENSMPUG00000019000) #32	ABCC8 (ENSMPUG00000013368) #33	USH1C (ENSMPUG00000013383) #34	OTOG (ENSMPUG00000013475) #35	MYOD1 (ENSMPUG00000013563) #36	KCNC1 (ENSMPUG00000013565) #37	SERGEF (ENSMPUG00000013567)
American mink	MODERN SPECIES	13		TEAD1 (ENSNVIG00000021030)	RASSF10 (ENSNVIG00000021027)	BMAL1 (ENSNVIG00000020993)	BTBD10 (ENSNVIG00000020940)	PTH (ENSNVIG00000020930)	FAR1 (ENSNVIG00000020912) #9	SPON1 (ENSNVIG00000020895) #10	RRAS2 (ENSNVIG00000020872) #11	COPB1 (ENSNVIG00000020799) #13	ENSNVIG00000020759 #14	PDE3B (ENSNVIG00000020721) #17	CYP2R1 (ENSNVIG00000020712) #18	CALCA (ENSNVIG00000020682) #20	CALCB (ENSNVIG00000020671) #21	INSC (ENSNVIG00000020515) #22	SOX6 (ENSNVIG00000020411) #24	C11orf58 (ENSNVIG00000020393) #26	PLEKHA7 (ENSNVIG00000020293) #27	RPS13 (ENSNVIG00000020246) ##29	PIK3C2A (ENSNVIG00000020155) #30	NUCB2 (ENSNVIG00000020065) #31	B7H6 (ENSNVIG00000020028)	KCNJ11 (ENSNVIG00000020022) #32	ABCC8 (ENSNVIG00000019489) #33	USH1C (ENSNVIG00000019256) #34	OTOG (ENSNVIG00000019193) #35	MYOD1 (ENSNVIG00000019177) #36	KCNC1 (ENSNVIG00000019159) #37	SERGEF (ENSNVIG00000019122)	TPH1 (ENSNVIG00000019049)
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000158780	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855.v.a.b #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000175801	ENSGT00390000017491.s.b ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855.u.a.b #14	ENSGT00940000159336.k #17	ENSGT00940000158305 #18	ENSGT00390000006370.g	ENSGT00940000156267 #21	ENSGT00940000162876.k.b #20	ENSGT00940000162876.l #20	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687.e.b #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.a.b ##29	ENSGT00940000175801	ENSGT00390000017491.t.u.b ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Dog	MODERN SPECIES	13	RRAS2 (ENSCAFG00845021419) #11	COPB1 (ENSCAFG00845021578) #13	PSMA1 (ENSCAFG00845021870) #14	ENSCAFG00845022095 #17	ENSCAFG00845022374 #18	ENSCAFG00845022519	ENSCAFG00845022568	ENSCAFG00845022709 #17	CYP2R1 (ENSCAFG00845022957) #18	ENSCAFG00845023032	ENSCAFG00845023057	CALCB (ENSCAFG00845023210) #21	CRSP-3 (ENSCAFG00845023281) #20	CRSP-2 (ENSCAFG00845023366) #20	CALCA (ENSCAFG00845023464)	INSC (ENSCAFG00845023608) #22	SOX6 (ENSCAFG00845024251) #24	C21H11orf58 (ENSCAFG00845025441) #26	PLEKHA7 (ENSCAFG00845025657) #27	RPS13 (ENSCAFG00845026930) ##29	PIK3C2A (ENSCAFG00845027085) #30	ENSCAFG00845014128	NUCB2 (ENSCAFG00845014171) #31	ENSCAFG00845014205	KCNJ11 (ENSCAFG00845014223) #32	ABCC8 (ENSCAFG00845014269) #33	USH1C (ENSCAFG00845014411) #34	OTOG (ENSCAFG00845014610) #35	MYOD1 (ENSCAFG00845014938) #36	KCNC1 (ENSCAFG00845014972) #37	SERGEF (ENSCAFG00845015032)
Dingo	MODERN SPECIES	231	PTH (ENSCAFG00020016557)	ENSCAFG00020016558	FAR1 (ENSCAFG00020016575) #9	SPON1 (ENSCAFG00020017055) #10	RRAS2 (ENSCAFG00020017190) #11	COPB1 (ENSCAFG00020017195) #13	ENSCAFG00020017202 #14	PDE3B (ENSCAFG00020017213) #17	CYP2R1 (ENSCAFG00020017254) #18	ENSCAFG00020017266	ENSCAFG00020017268	CALCB (ENSCAFG00020017275) #21	ENSCAFG00020017277 #20	ENSCAFG00020017285 #20	ENSCAFG00020017290	INSC (ENSCAFG00020017307) #22	SOX6 (ENSCAFG00020017327) #24	ENSCAFG00020017379 #26	PLEKHA7 (ENSCAFG00020017394) #27	ENSCAFG00020017408 ##29	ENSCAFG00020017410	ENSCAFG00020017417 #30	ENSCAFG00020017434 #30	NUCB2 (ENSCAFG00020017444) #31	ENSCAFG00020017461	ENSCAFG00020017465	KCNJ11 (ENSCAFG00020017466) #32	ABCC8 (ENSCAFG00020017543) #33	USH1C (ENSCAFG00020018102) #34	OTOG (ENSCAFG00020018311) #35	MYOD1 (ENSCAFG00020018371) #36
Red fox	MODERN SPECIES	70	BTBD10 (ENSVVUG00000025143)	PTH (ENSVVUG00000025139)	FAR1 (ENSVVUG00000025136) #9	SPON1 (ENSVVUG00000024273) #10	RRAS2 (ENSVVUG00000024249) #11	COPB1 (ENSVVUG00000024246) #13	ENSVVUG00000024241 #14	PDE3B (ENSVVUG00000024229) #17	ENSVVUG00000024228	ENSVVUG00000024225 #21	ENSVVUG00000024224 #20	CYP2R1 (ENSVVUG00000024223) #18	ENSVVUG00000024222 #20	CALCB (ENSVVUG00000024219) #21	ENSVVUG00000024218	INSC (ENSVVUG00000024215) #22	SOX6 (ENSVVUG00000024203) #24	ENSVVUG00000024192 #26	PLEKHA7 (ENSVVUG00000024123) #27	RPS13 (ENSVVUG00000024098) ##29	PIK3C2A (ENSVVUG00000024074) #30	NUCB2 (ENSVVUG00000024060) #31	ENSVVUG00000024057	KCNJ11 (ENSVVUG00000024056) #32	ABCC8 (ENSVVUG00000024039) #33	USH1C (ENSVVUG00000024033) #34	OTOG (ENSVVUG00000024003) #35	MYOD1 (ENSVVUG00000023995) #36	KCNC1 (ENSVVUG00000023991) #37	SERGEF (ENSVVUG00000023986)	TPH1 (ENSVVUG00000023982)
Felidae	ANCESTRAL SPECIES		ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855.u.a #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.j.a ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684.g	ENSGT00950000182885.A.a
Panthera	ANCESTRAL SPECIES	13	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855.u.a #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.j.a ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684.g	ENSGT00950000182885.A.a
Tiger	MODERN SPECIES	181	ENSPTIG00000008206	PARVA (ENSPTIG00000010785)	TEAD1 (ENSPTIG00000012563)	BMAL1 (ENSPTIG00000013181)	BTBD10 (ENSPTIG00000014424)	PTH (ENSPTIG00000015285)	FAR1 (ENSPTIG00000016508) #9	SPON1 (ENSPTIG00000017450) #10	RRAS2 (ENSPTIG00000018792) #11	COPB1 (ENSPTIG00000020083) #13	PSMA1 (ENSPTIG00000006030) #14	PDE3B (ENSPTIG00000007753) #17	CYP2R1 (ENSPTIG00000010838) #18	CALCA (ENSPTIG00000011763) #20	CALCB (ENSPTIG00000012066) #21	INSC (ENSPTIG00000013388) #22	SOX6 (ENSPTIG00000016273) #24	C11orf58 (ENSPTIG00000020023) #26	PLEKHA7 (ENSPTIG00000020256) #27	RPS13 (ENSPTIG00000021592) ##29	PIK3C2A (ENSPTIG00000000013) #30	NUCB2 (ENSPTIG00000004594) #31	ENSPTIG00000011519	KCNJ11 (ENSPTIG00000005960) #32	ABCC8 (ENSPTIG00000012009) #33	USH1C (ENSPTIG00000017574) #34
Panthera_a	ANCESTRAL SPECIES	20	ENSGT00940000162628	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855.u.a #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u.j.a ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684.g	ENSGT00950000182885.A.a
leopard	MODERN SPECIES	29	TEAD1 (ENSPPRG00000017830)	RASSF10 (ENSPPRG00000018650)	BMAL1 (ENSPPRG00000011644)	BTBD10 (ENSPPRG00000007872)	PTH (ENSPPRG00000007081)	ENSPPRG00000018396	FAR1 (ENSPPRG00000006618) #9	SPON1 (ENSPPRG00000006195) #10	RRAS2 (ENSPPRG00000006082) #11	COPB1 (ENSPPRG00000003968) #13	PSMA1 (ENSPPRG00000001324) #14	PDE3B (ENSPPRG00000000697) #17	CYP2R1 (ENSPPRG00000022665) #18	ENSPPRG00000023221 #20	CALCB (ENSPPRG00000020148) #21	INSC (ENSPPRG00000016954) #22	ENSPPRG00000013736	SOX6 (ENSPPRG00000013207) #24	C11orf58 (ENSPPRG00000009350) #26	PLEKHA7 (ENSPPRG00000008439) #27	ENSPPRG00000005193 ##29	PIK3C2A (ENSPPRG00000004750) #30	ENSPPRG00000004343	NUCB2 (ENSPPRG00000003722) #31	ENSPPRG00000001436	ENSPPRG00000001001	KCNJ11 (ENSPPRG00000017642) #32	ABCC8 (ENSPPRG00000000376) #33	USH1C (ENSPPRG00000014239) #34	OTOG (ENSPPRG00000010741) #35	MYOD1 (ENSPPRG00000003796) #36
lion	MODERN SPECIES	10	PARVA (ENSPLOG00000008506)	TEAD1 (ENSPLOG00000008642)	RASSF10 (ENSPLOG00000008927)	BMAL1 (ENSPLOG00000008980)	BTBD10 (ENSPLOG00000009236)	PTH (ENSPLOG00000009324)	ENSPLOG00000009349	FAR1 (ENSPLOG00000009385) #9	SPON1 (ENSPLOG00000009449) #10	RRAS2 (ENSPLOG00000009540) #11	COPB1 (ENSPLOG00000009586) #13	PSMA1 (ENSPLOG00000009654) #14	PDE3B (ENSPLOG00000009724) #17	CYP2R1 (ENSPLOG00000009867) #18	CALCA (ENSPLOG00000009923) #20	INSC (ENSPLOG00000010032) #22	SOX6 (ENSPLOG00000010257) #24	ENSPLOG00000010453	C11orf58 (ENSPLOG00000010495) #26	PLEKHA7 (ENSPLOG00000010586) #27	RPS13 (ENSPLOG00000010890) ##29	PIK3C2A (ENSPLOG00000010953) #30	ENSPLOG00000011047	NUCB2 (ENSPLOG00000011132) #31	ENSPLOG00000011439	KCNJ11 (ENSPLOG00000011463) #32	ABCC8 (ENSPLOG00000011679) #33	USH1C (ENSPLOG00000014009) #34	OTOG (ENSPLOG00000014950) #35	MYOD1 (ENSPLOG00000015478) #36	KCNC1 (ENSPLOG00000015532) #37
Cat	MODERN SPECIES	241	TEAD1 (ENSFCAG00000019353)	RASSF10 (ENSFCAG00000041884)	ARNTL (ENSFCAG00000010983)	BTBD10 (ENSFCAG00000030981)	PTH (ENSFCAG00000045547)	FAR1 (ENSFCAG00000024350) #9	SPON1 (ENSFCAG00000009573) #10	RRAS2 (ENSFCAG00000009578) #11	COPB1 (ENSFCAG00000011380) #13	PSMA1 (ENSFCAG00000011381) #14	PDE3B (ENSFCAG00000022296) #17	CYP2R1 (ENSFCAG00000011383) #18	ENSFCAG00000035489	ENSFCAG00000051414	CALCB (ENSFCAG00000034071) #21	INSC (ENSFCAG00000002733) #22	SOX6 (ENSFCAG00000002214) #24	CD1H11orf58 (ENSFCAG00000036407) #26	PLEKHA7 (ENSFCAG00000007029) #27	ENSFCAG00000033219	ENSFCAG00000042979 ##29	PIK3C2A (ENSFCAG00000023161) #30	NUCB2 (ENSFCAG00000007304) #31	NCR3LG1 (ENSFCAG00000023665)	KCNJ11 (ENSFCAG00000007305) #32	ABCC8 (ENSFCAG00000004967) #33	USH1C (ENSFCAG00000004971) #34	OTOG (ENSFCAG00000004972) #35	MYOD1 (ENSFCAG00000004973) #36	KCNC1 (ENSFCAG00000004974) #37	SERGEF (ENSFCAG00000000209)
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00940000162628	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Equus	ANCESTRAL SPECIES	40	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00390000013819	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Horse	MODERN SPECIES	28	RASSF10 (ENSECAG00000012098)	ARNTL (ENSECAG00000012118)	BTBD10 (ENSECAG00000017056)	PTH (ENSECAG00000019608)	FAR1 (ENSECAG00000019618) #9	SPON1 (ENSECAG00000020789) #10	RRAS2 (ENSECAG00000021393) #11	COPB1 (ENSECAG00000021898) #13	ENSECAG00000057029	PSMA1 (ENSECAG00000024086) #14	PDE3B (ENSECAG00000024797) #17	CYP2R1 (ENSECAG00000007597) #18	CALCA (ENSECAG00000007825) #20	ENSECAG00000008669 #20	ENSECAG00000008818 #21	INSC (ENSECAG00000009559) #22	SOX6 (ENSECAG00000010880) #24	ENSECAG00000050226	C7H11orf58 (ENSECAG00000011778) #26	PLEKHA7 (ENSECAG00000011848) #27	RPS13 (ENSECAG00000014928) ##29	PIK3C2A (ENSECAG00000014963) #30	NUCB2 (ENSECAG00000016586) #31	ENSECAG00000054585	KCNJ11 (ENSECAG00000001643) #32	ABCC8 (ENSECAG00000020074) #33	USH1C (ENSECAG00000024745) #34	OTOG (ENSECAG00000025047) #35	MYOD1 (ENSECAG00000002132) #36	KCNC1 (ENSECAG00000002236) #37	SERGEF (ENSECAG00000056096)
Donkey	MODERN SPECIES	12	BMAL1 (ENSEASG00005005913)	BTBD10 (ENSEASG00005005917)	PTH (ENSEASG00005005922)	FAR1 (ENSEASG00005005927) #9	SPON1 (ENSEASG00005005931) #10	RRAS2 (ENSEASG00005005934) #11	ENSEASG00005026622	COPB1 (ENSEASG00005005937) #13	PSMA1 (ENSEASG00005005940) #14	PDE3B (ENSEASG00005005968) #17	ENSEASG00005006005 #18	ENSEASG00005006008	ENSEASG00005027691 #20	ENSEASG00005030327 #20	CALCB (ENSEASG00005006012) #21	INSC (ENSEASG00005006018) #22	SOX6 (ENSEASG00005006024) #24	C11orf58 (ENSEASG00005033834) #26	PLEKHA7 (ENSEASG00005006038) #27	ENSEASG00005006041 ##29	PIK3C2A (ENSEASG00005006116) #30	NUCB2 (ENSEASG00005006907) #31	ENSEASG00005006925	KCNJ11 (ENSEASG00005032263) #32	ABCC8 (ENSEASG00005007029) #33	USH1C (ENSEASG00005007566) #34	OTOG (ENSEASG00005007567) #35	MYOD1 (ENSEASG00005007569) #36	KCNC1 (ENSEASG00005007570) #37	SERGEF (ENSEASG00005007572)	TPH1 (ENSEASG00005007573)
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Microchiroptera	ANCESTRAL SPECIES	31	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000162876 #20	ENSGT00940000156267 #21	ENSGT00940000167380	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.u ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Greater horseshoe bat	MODERN SPECIES	2	RASSF10 (ENSRFEG00010021663)	BMAL1 (ENSRFEG00010021622)	BTBD10 (ENSRFEG00010021587)	PTH (ENSRFEG00010021570)	FAR1 (ENSRFEG00010021546) #9	SPON1 (ENSRFEG00010021527) #10	RRAS2 (ENSRFEG00010021520) #11	COPB1 (ENSRFEG00010021503) #13	PSMA1 (ENSRFEG00010021475) #14	PDE3B (ENSRFEG00010021438) #17	CYP2R1 (ENSRFEG00010021421) #18	ENSRFEG00010021417 #21	ENSRFEG00010021410 #20	ENSRFEG00010021405 #21	ENSRFEG00010021391	INSC (ENSRFEG00010021354) #22	SOX6 (ENSRFEG00010021298) #24	ENSRFEG00010021282	C11orf58 (ENSRFEG00010021253) #26	PLEKHA7 (ENSRFEG00010021179) #27	ENSRFEG00010021136 ##29	PIK3C2A (ENSRFEG00010021091) #30	NUCB2 (ENSRFEG00010021004) #31	ENSRFEG00010020981	KCNJ11 (ENSRFEG00010020978) #32	ENSRFEG00010020967	ABCC8 (ENSRFEG00010020943) #33	USH1C (ENSRFEG00010020886) #34	OTOG (ENSRFEG00010020852) #35	MYOD1 (ENSRFEG00010020830) #36	KCNC1 (ENSRFEG00010020809) #37
Microbat	MODERN SPECIES	1061																ENSMLUG00000009029 #22	SOX6 (ENSMLUG00000007911) #24	C11orf58 (ENSMLUG00000001589) #26	PLEKHA7 (ENSMLUG00000001591) #27	ENSMLUG00000009751 ##29	PIK3C2A (ENSMLUG00000007089) #30	ENSMLUG00000029239	ENSMLUG00000024625	KCNJ11 (ENSMLUG00000012273) #32	NUCB2 (ENSMLUG00000004101) #31	ABCC8 (ENSMLUG00000012276) #33	USH1C (ENSMLUG00000002529) #34	OTOG (ENSMLUG00000002545) #35	ENSMLUG00000029772	MYOD1 (ENSMLUG00000007940) #36	KCNC1 (ENSMLUG00000007950) #37
Megabat	MODERN SPECIES	2952																INSC (ENSPVAG00000008933) #22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000001511 #22
Hedgehog	MODERN SPECIES	7961																ENSEEUG00000005008 #22
Common shrew	MODERN SPECIES	6256																INSC (ENSSARG00000005849) #22
Atlantogenata	ANCESTRAL SPECIES	13	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00940000162876 #20	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Xenarthra	ANCESTRAL SPECIES	199					ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687.c #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.a ##29	ENSGT00940000157813 #30
Sloth	MODERN SPECIES	7029																INSC (ENSCHOG00000013692) #22
Armadillo	MODERN SPECIES	2958	ENSDNOG00000032396	RASSF10 (ENSDNOG00000031556)	BMAL1 (ENSDNOG00000003841)	BTBD10 (ENSDNOG00000003854)	PTH (ENSDNOG00000003272)	ENSDNOG00000043297	FAR1 (ENSDNOG00000002552) #9	SPON1 (ENSDNOG00000011819) #10	ENSDNOG00000011828 #11	COPB1 (ENSDNOG00000018754) #13	ENSDNOG00000049634	PDE3B (ENSDNOG00000006062) #17	CYP2R1 (ENSDNOG00000025774) #18	ENSDNOG00000017915 #21	ENSDNOG00000018612 #21	INSC (ENSDNOG00000012392) #22	SOX6 (ENSDNOG00000004344) #24	ENSDNOG00000037449 #26	PLEKHA7 (ENSDNOG00000000399) #27	ENSDNOG00000038925 ##29	PIK3C2A (ENSDNOG00000018025) #30	ENSDNOG00000041453	ENSDNOG00000037135	NUCB2 (ENSDNOG00000006914) #31
Afrotheria	ANCESTRAL SPECIES	16	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00940000162876 #20	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Tenrec	MODERN SPECIES	7879																INSC (ENSETEG00000002807) #22
Afrotheria_a	ANCESTRAL SPECIES	17	ENSGT00950000183194.a.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000182839.A.d	ENSGT00940000157523	ENSGT00390000007975.a	ENSGT00390000018603	ENSGT00390000006367.d #9	ENSGT00940000154910.b.b #10	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00940000162876 #20	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Elephant	MODERN SPECIES	209	TEAD1 (ENSLAFG00000016484)	RASSF10 (ENSLAFG00000007284)	BMAL1 (ENSLAFG00000026673)	BTBD10 (ENSLAFG00000017180)	PTH (ENSLAFG00000028790)	FAR1 (ENSLAFG00000000971) #9	SPON1 (ENSLAFG00000002558) #10	RRAS2 (ENSLAFG00000002561) #11	COPB1 (ENSLAFG00000006159) #13	PSMA1 (ENSLAFG00000006165) #14	ENSLAFG00000027121	PDE3B (ENSLAFG00000008453) #17	CYP2R1 (ENSLAFG00000005356) #18	ENSLAFG00000003276 #21	ENSLAFG00000015843 #20	INSC (ENSLAFG00000005686) #22	SOX6 (ENSLAFG00000002917) #24	C11orf58 (ENSLAFG00000007606) #26	PLEKHA7 (ENSLAFG00000007609) #27	RPS13 (ENSLAFG00000026881) ##29	PIK3C2A (ENSLAFG00000003710) #30	NUCB2 (ENSLAFG00000007349) #31	KCNJ11 (ENSLAFG00000031878) #32	ABCC8 (ENSLAFG00000007014) #33	USH1C (ENSLAFG00000022470) #34	OTOG (ENSLAFG00000004882) #35	MYOD1 (ENSLAFG00000018353) #36	KCNC1 (ENSLAFG00000018355) #37	SERGEF (ENSLAFG00000018367)	ENSLAFG00000007862	ENSLAFG00000027166
Hyrax	MODERN SPECIES	6633																INSC (ENSPCAG00000012205) #22
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.a.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Opossum	MODERN SPECIES	4	ENSMODG00000007534	ENSMODG00000025551	DENND2B (ENSMODG00000007524)	ENSMODG00000007480	TRIM66 (ENSMODG00000007442)	STK33 (ENSMODG00000007414)	LMO1 (ENSMODG00000007385)	RIC3 (ENSMODG00000007371)	TUB (ENSMODG00000007360)	ENSMODG00000043697 #11	COPB1 (ENSMODG00000007335) #13	PSMA1 (ENSMODG00000007303) #14	ENSMODG00000007288	PDE3B (ENSMODG00000007280) #17	CYP2R1 (ENSMODG00000007273) #18	INSC (ENSMODG00000007236) #22	ENSMODG00000024593	ENSMODG00000029280	SOX6 (ENSMODG00000007224) #24	C11orf58 (ENSMODG00000043387) #26	PLEKHA7 (ENSMODG00000007138) #27	RPS13 (ENSMODG00000007078) ##29	ENSMODG00000007062 #30	NUCB2 (ENSMODG00000007015) #31	KCNJ11 (ENSMODG00000007004) #32	ABCC8 (ENSMODG00000006995) #33	USH1C (ENSMODG00000006841) #34	OTOG (ENSMODG00000006791) #35	MYOD1 (ENSMODG00000006749) #36	KCNC1 (ENSMODG00000006734) #37	ENSMODG00000006721
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.a.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687.b #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Diprotodontia	ANCESTRAL SPECIES	10	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.a.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687.b #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Diprotodontia_a	ANCESTRAL SPECIES	12	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.a.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687.b #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491.t.w ##29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e.e	ENSGT00940000163348.e.f	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
koala	MODERN SPECIES	108							ENSPCIG00000010493	RIC3 (ENSPCIG00000010494)	TUB (ENSPCIG00000010496)	RRAS2 (ENSPCIG00000010498) #11	COPB1 (ENSPCIG00000010506) #13	PSMA1 (ENSPCIG00000010513) #14	PDE3B (ENSPCIG00000034172) #17	CYP2R1 (ENSPCIG00000010518) #18	ENSPCIG00000010519 #21	INSC (ENSPCIG00000010520) #22	SOX6 (ENSPCIG00000021385) #24	C11orf58 (ENSPCIG00000021388) #26	PLEKHA7 (ENSPCIG00000021403) #27	ENSPCIG00000013612 ##29	PIK3C2A (ENSPCIG00000013619) #30	NUCB2 (ENSPCIG00000013631) #31	ENSPCIG00000035386	ENSPCIG00000013127	ABCC8 (ENSPCIG00000013643) #33	USH1C (ENSPCIG00000013650) #34	MYOD1 (ENSPCIG00000018402) #36	KCNC1 (ENSPCIG00000013732) #37	ENSPCIG00000013737	TPH1 (ENSPCIG00000013741)	SAAL1 (ENSPCIG00000013745)
Common wonbat	MODERN SPECIES	608	DENND2B (ENSVURG00010005170)	ENSVURG00010005279	TRIM66 (ENSVURG00010005315)	ENSVURG00010005339	LMO1 (ENSVURG00010005360)	RIC3 (ENSVURG00010005364)	TUB (ENSVURG00010005392)	RRAS2 (ENSVURG00010005535) #11	COPB1 (ENSVURG00010005577) #13	PSMA1 (ENSVURG00010005585) #14	ENSVURG00010005600	ENSVURG00010005620 #17	CYP2R1 (ENSVURG00010005688) #18	ENSVURG00010005754 #21	ENSVURG00010005761	INSC (ENSVURG00010005781) #22	SOX6 (ENSVURG00010005847) #24	C11orf58 (ENSVURG00010005869) #26	PLEKHA7 (ENSVURG00010005891) #27	RPS13 (ENSVURG00010005940) ##29	PIK3C2A (ENSVURG00010005972) #30	NUCB2 (ENSVURG00010006037) #31	ENSVURG00010006183	ENSVURG00010006198	KCNJ11 (ENSVURG00010006207) #32	ABCC8 (ENSVURG00010006223) #33	USH1C (ENSVURG00010006258) #34	OTOG (ENSVURG00010006327) #35	MYOD1 (ENSVURG00010006453) #36	KCNC1 (ENSVURG00010006461) #37	SERGEF (ENSVURG00010006477)
Wallaby	MODERN SPECIES	9466																INSC (ENSMEUG00000010695) #22
Tasmanian devil	MODERN SPECIES	5	ASCL3 (ENSSHAG00000030483)	ENSSHAG00000018084	DENND2B (ENSSHAG00000030668)	RPL27A (ENSSHAG00000020614)	TRIM66 (ENSSHAG00000017621)	ENSSHAG00000017222	LMO1 (ENSSHAG00000016707)	ENSSHAG00000016461	ENSSHAG00000016289	ENSSHAG00000016060 #11	COPB1 (ENSSHAG00000015683) #13	PSMA1 (ENSSHAG00000025274) #14	PDE3B (ENSSHAG00000014935) #17	CYP2R1 (ENSSHAG00000014886) #18	ENSSHAG00000025195 #21	INSC (ENSSHAG00000014350) #22	ENSSHAG00000028264	SOX6 (ENSSHAG00000006502) #24	ENSSHAG00000008106 #26	PLEKHA7 (ENSSHAG00000007139) #27	RPS13 (ENSSHAG00000004052) ##29	PIK3C2A (ENSSHAG00000001008) #30	ENSSHAG00000028371 #31	KCNJ11 (ENSSHAG00000022074) #32	ABCC8 (ENSSHAG00000017597) #33	USH1C (ENSSHAG00000017497) #34	OTOG (ENSSHAG00000017355) #35	MYOD1 (ENSSHAG00000017220) #36	KCNC1 (ENSSHAG00000022035) #37	ENSSHAG00000023659	TPH1 (ENSSHAG00000016519)
Platypus	MODERN SPECIES	14	ENSOANG00000003111	DENND2B (ENSOANG00000006442)	ENSOANG00000006440	ENSOANG00000004644	TRIM66 (ENSOANG00000038977)	ENSOANG00000020955	ENSOANG00000029211	RIC3 (ENSOANG00000009944)	TUB (ENSOANG00000009946)	RRAS2 (ENSOANG00000012470) #11	COPB1 (ENSOANG00000006884) #13	PSMA1 (ENSOANG00000006654) #14	PDE3B (ENSOANG00000032034) #17	CYP2R1 (ENSOANG00000006368) #18	ENSOANG00000041034 #21	INSC (ENSOANG00000030687) #22	ENSOANG00000001353	ENSOANG00000022345 #24	ENSOANG00000050997	C11orf58 (ENSOANG00000036260) #26	PLEKHA7 (ENSOANG00000007688) #27	RPS13 (ENSOANG00000007687) #29	PIK3C2A (ENSOANG00000007685) #30	NUCB2 (ENSOANG00000007683) #31	ENSOANG00000045336	ABCC8 (ENSOANG00000007680) #33	ENSOANG00000007679 #34	OTOG (ENSOANG00000010676) #35	ENSOANG00000047737 #36	KCNC1 (ENSOANG00000003052) #37	ENSOANG00000044323
Sauria	ANCESTRAL SPECIES	3	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000175801.b	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00980000200162	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00980000200162	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Archosauria	ANCESTRAL SPECIES	5	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Aves	ANCESTRAL SPECIES	2	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000162850	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Neognathae_b	ANCESTRAL SPECIES	14	ENSGT00940000162850	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Neognathae_c	ANCESTRAL SPECIES	17	ENSGT00940000162850	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Golden eagle	MODERN SPECIES	7	TMEM9B (ENSACCG00020013672)	ASCL3 (ENSACCG00020013660)	ENSACCG00020013646	DENND2B (ENSACCG00020013509)	RPL27A (ENSACCG00020013299)	TRIM66 (ENSACCG00020013270)	ENSACCG00020013233	RIC3 (ENSACCG00020013155)	TUB (ENSACCG00020013127)	RRAS2 (ENSACCG00020013059) #11	COPB1 (ENSACCG00020013034) #13	PSMA1 (ENSACCG00020013012) #14	PDE3B (ENSACCG00020012978) #17	CYP2R1 (ENSACCG00020012873) #18	CALCB (ENSACCG00020012823) #21	INSC (ENSACCG00020012787) #22	SOX6 (ENSACCG00020012746) #24	C11orf58 (ENSACCG00020012713) #26	PLEKHA7 (ENSACCG00020012653) #27	ENSACCG00020012617	RPS13 (ENSACCG00020012604) #29	PIK3C2A (ENSACCG00020012476) #30	NUCB2 (ENSACCG00020012398) #31	KCNJ11 (ENSACCG00020012371) #32	ABCC8 (ENSACCG00020012283) #33	USH1C (ENSACCG00020012229) #34	OTOG (ENSACCG00020012135) #35	ENSACCG00020012030	MYOD1 (ENSACCG00020012010) #36	KCNC1 (ENSACCG00020011992) #37	SERGEF (ENSACCG00020011956)
Kakapo	MODERN SPECIES	21	C11orf16 (ENSSHBG00005014254)	AKIP1 (ENSSHBG00005014232)	DENND2B (ENSSHBG00005014122)	RPL27A (ENSSHBG00005014075)	TRIM66 (ENSSHBG00005014036)	ENSSHBG00005014023	ENSSHBG00005014002	RIC3 (ENSSHBG00005013993)	TUB (ENSSHBG00005013947)	RRAS2 (ENSSHBG00005013925) #11	COPB1 (ENSSHBG00005013894) #13	PSMA1 (ENSSHBG00005013874) #14	PDE3B (ENSSHBG00005013797) #17	CYP2R1 (ENSSHBG00005013764) #18	CALCB (ENSSHBG00005013758) #21	INSC (ENSSHBG00005013739) #22	SOX6 (ENSSHBG00005013226) #24	C11orf58 (ENSSHBG00005013164) #26	PLEKHA7 (ENSSHBG00005012968) #27	RPS13 (ENSSHBG00005012856) #29	ENSSHBG00005012355 #30	ENSSHBG00005012272 #30	NUCB2 (ENSSHBG00005000815) #31	KCNJ11 (ENSSHBG00005000811) #32	ABCC8 (ENSSHBG00005000788) #33	USH1C (ENSSHBG00005000692) #34	OTOG (ENSSHBG00005004083) #35	ENSSHBG00005004063	MYOD1 (ENSSHBG00005004057) #36	KCNC1 (ENSSHBG00005004052) #37	SERGEF (ENSSHBG00005004045)
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00390000000819.a	ENSGT00940000162850	ENSGT00390000012348	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00390000000819.a	ENSGT00940000162850	ENSGT00390000012348	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00390000000819.a	ENSGT00940000162850	ENSGT00390000012348	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00390000000819.a	ENSGT00940000162850	ENSGT00390000012348	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Common canary	MODERN SPECIES	3	ASCL3 (ENSSCAG00000005391)	ENSSCAG00000005387	ENSSCAG00000005380	DENND2B (ENSSCAG00000005375)	RPL27A (ENSSCAG00000005368)	TRIM66 (ENSSCAG00000005363)	ENSSCAG00000005354	RIC3 (ENSSCAG00000005349)	TUB (ENSSCAG00000005342)	RRAS2 (ENSSCAG00000005336) #11	COPB1 (ENSSCAG00000005322) #13	PSMA1 (ENSSCAG00000005319) #14	PDE3B (ENSSCAG00000005287) #17	CYP2R1 (ENSSCAG00000005278) #18	CALCB (ENSSCAG00000005276) #21	INSC (ENSSCAG00000005272) #22	SOX6 (ENSSCAG00000005255) #24	C11orf58 (ENSSCAG00000005235) #26	PLEKHA7 (ENSSCAG00000005218) #27	RPS13 (ENSSCAG00000005185) #29	PIK3C2A (ENSSCAG00000005178) #30	NUCB2 (ENSSCAG00000005171) #31	KCNJ11 (ENSSCAG00000005168) #32	ABCC8 (ENSSCAG00000005141) #33	USH1C (ENSSCAG00000005121) #34	OTOG (ENSSCAG00000005097) #35	ENSSCAG00000005088	MYOD1 (ENSSCAG00000005079) #36	KCNC1 (ENSSCAG00000005066) #37	SERGEF (ENSSCAG00000005048)	TPH1 (ENSSCAG00000005038)
Zebra finch	MODERN SPECIES	27	TMEM9B (ENSTGUG00000020995)	C11orf16 (ENSTGUG00000008326)	DENND2B (ENSTGUG00000008328)	RPL27A (ENSTGUG00000008355)	TRIM66 (ENSTGUG00000008369)	LMO1 (ENSTGUG00000008389)	RIC3 (ENSTGUG00000008401)	TUB (ENSTGUG00000008407)	RRAS2 (ENSTGUG00000008422) #11	COPB1 (ENSTGUG00000008435) #13	ENSTGUG00000028302	PSMA1 (ENSTGUG00000008447) #14	PDE3B (ENSTGUG00000008479) #17	CYP2R1 (ENSTGUG00000008492) #18	CALCB (ENSTGUG00000008509) #21	INSC (ENSTGUG00000008514) #22	SOX6 (ENSTGUG00000008522) #24	C11orf58 (ENSTGUG00000024921) #26	PLEKHA7 (ENSTGUG00000008557) #27	RPS13 (ENSTGUG00000008572) #29	PIK3C2A (ENSTGUG00000008575) #30	NUCB2 (ENSTGUG00000008639) #31	KCNJ11 (ENSTGUG00000008677) #32	ABCC8 (ENSTGUG00000008682) #33	USH1C (ENSTGUG00000008748) #34	OTOG (ENSTGUG00000008789) #35	ENSTGUG00000008813	MYOD1 (ENSTGUG00000008814) #36	KCNC1 (ENSTGUG00000008821) #37	SERGEF (ENSTGUG00000008830)	TPH1 (ENSTGUG00000008841)
Medium ground finch	MODERN SPECIES	113						TRIM66 (ENSGFOG00000009004)	ENSGFOG00000009081	RIC3 (ENSGFOG00000009091)	TUB (ENSGFOG00000009103)	RRAS2 (ENSGFOG00000009135) #11	COPB1 (ENSGFOG00000009147) #13	PSMA1 (ENSGFOG00000009164) #14	PDE3B (ENSGFOG00000009185) #17	CYP2R1 (ENSGFOG00000009306) #18	CALCB (ENSGFOG00000009314) #21	INSC (ENSGFOG00000009330) #22	SOX6 (ENSGFOG00000009373) #24	C11orf58 (ENSGFOG00000009400) #26	PLEKHA7 (ENSGFOG00000009416) #27	RPS13 (ENSGFOG00000009433) #29	PIK3C2A (ENSGFOG00000009443) #30	NUCB2 (ENSGFOG00000009474) #31	KCNJ11 (ENSGFOG00000009487) #32	ABCC8 (ENSGFOG00000009786) #33	USH1C (ENSGFOG00000014191) #34	OTOG (ENSGFOG00000014193) #35	MYOD1 (ENSGFOG00000014197) #36	KCNC1 (ENSGFOG00000014198) #37
Flycatcher	MODERN SPECIES	24	ENSFALG00000026057	DENND2B (ENSFALG00000000927)	ENSFALG00000000924	TRIM66 (ENSFALG00000000917)	ENSFALG00000026371	ENSFALG00000024346	ENSFALG00000000908	ENSFALG00000023361	TUB (ENSFALG00000000897)	RRAS2 (ENSFALG00000000889) #11	COPB1 (ENSFALG00000000867) #13	PSMA1 (ENSFALG00000000841) #14	PDE3B (ENSFALG00000000827) #17	CYP2R1 (ENSFALG00000000820) #18	CALCB (ENSFALG00000024809) #21	INSC (ENSFALG00000000814) #22	SOX6 (ENSFALG00000000798) #24	C11orf58 (ENSFALG00000026715) #26	PLEKHA7 (ENSFALG00000000789) #27	RPS13 (ENSFALG00000000784) #29	PIK3C2A (ENSFALG00000000780) #30	NUCB2 (ENSFALG00000000778) #31	KCNJ11 (ENSFALG00000014605) #32	ABCC8 (ENSFALG00000000775) #33	USH1C (ENSFALG00000000770) #34	OTOG (ENSFALG00000000765) #35	ENSFALG00000028324	MYOD1 (ENSFALG00000000758) #36	KCNC1 (ENSFALG00000000754) #37	SERGEF (ENSFALG00000011059)	TPH1 (ENSFALG00000011078)
Great tit	MODERN SPECIES	25	TMEM9B (ENSPMJG00000006242)	ASCL3 (ENSPMJG00000006244)	C11orf16 (ENSPMJG00000006245)	DENND2B (ENSPMJG00000006251)	RPL27A (ENSPMJG00000006255)	TRIM66 (ENSPMJG00000006259)	ENSPMJG00000006285	RIC3 (ENSPMJG00000006290)	TUB (ENSPMJG00000006294)	RRAS2 (ENSPMJG00000006322) #11	COPB1 (ENSPMJG00000006324) #13	PSMA1 (ENSPMJG00000006337) #14	PDE3B (ENSPMJG00000006349) #17	CYP2R1 (ENSPMJG00000006364) #18	CALCB (ENSPMJG00000006368) #21	INSC (ENSPMJG00000006370) #22	MPEG1 (ENSPMJG00000006390)	DTX4 (ENSPMJG00000006392)	CNTF (ENSPMJG00000006394)	ZFP91 (ENSPMJG00000006396)	LPXN (ENSPMJG00000006408)	CTNND1 (ENSPMJG00000006416)	ENSPMJG00000006427	TMX2 (ENSPMJG00000006428)	MED19 (ENSPMJG00000006481)	ZDHHC5 (ENSPMJG00000006482)	CLP1 (ENSPMJG00000006483)	YPEL4 (ENSPMJG00000006484)	SERPING1 (ENSPMJG00000006486)	ENSPMJG00000006489	ENSPMJG00000006501
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00940000162850	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Anatidae	ANCESTRAL SPECIES	33	ENSGT00390000000819.a	ENSGT00940000162850	ENSGT00960000189985	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a.b
Pink-footed goose	MODERN SPECIES	33						TRIM66 (ENSABRG00000013700)	ENSABRG00000013739	RIC3 (ENSABRG00000013757)	TUB (ENSABRG00000013769)	RRAS2 (ENSABRG00000013813) #11	COPB1 (ENSABRG00000013817) #13	PSMA1 (ENSABRG00000013833) #14	PDE3B (ENSABRG00000013841) #17	CYP2R1 (ENSABRG00000013865) #18	CALCB (ENSABRG00000013884) #21	INSC (ENSABRG00000013914) #22	ENSABRG00000013975	SOX6 (ENSABRG00000013981) #24	C11orf58 (ENSABRG00000013996) #26	PLEKHA7 (ENSABRG00000014016) #27	RPS13 (ENSABRG00000014031) #29	PIK3C2A (ENSABRG00000014041) #30	NUCB2 (ENSABRG00000014061) #31	KCNJ11 (ENSABRG00000014070) #32	ABCC8 (ENSABRG00000014379) #33	USH1C (ENSABRG00000017259) #34	OTOG (ENSABRG00000017284) #35	ENSABRG00000017331	MYOD1 (ENSABRG00000017333) #36	KCNC1 (ENSABRG00000017337) #37	SERGEF (ENSABRG00000017340)
Duck	MODERN SPECIES	23	TMEM9B (ENSAPLG00000003457)	ASCL3 (ENSAPLG00000001043)	ENSAPLG00000020183	ENSAPLG00000026289	ENSAPLG00000003498	RPL27A (ENSAPLG00000004088)	TRIM66 (ENSAPLG00000004186)	ENSAPLG00000029620	ENSAPLG00000022708	RIC3 (ENSAPLG00000014075)	TUB (ENSAPLG00000013637)	RRAS2 (ENSAPLG00000019435) #11	COPB1 (ENSAPLG00000007005) #13	PSMA1 (ENSAPLG00000007846) #14	CALCB (ENSAPLG00000008604) #21	INSC (ENSAPLG00000008621) #22	SOX6 (ENSAPLG00000008744) #24	C11orf58 (ENSAPLG00000018784) #26	PLEKHA7 (ENSAPLG00000008901) #27	RPS13 (ENSAPLG00000011983) #29	PIK3C2A (ENSAPLG00000010801) #30	NUCB2 (ENSAPLG00000010426) #31	KCNJ11 (ENSAPLG00000021853) #32	ABCC8 (ENSAPLG00000009025) #33	USH1C (ENSAPLG00000008735) #34	OTOG (ENSAPLG00000008072) #35	MYOD1 (ENSAPLG00000005673) #36	KCNC1 (ENSAPLG00000005789) #37	SERGEF (ENSAPLG00000005876)	ENSAPLG00000006128	CYB5R2 (ENSAPLG00000006316)
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00940000162850	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Japanese quail	MODERN SPECIES	23	ASCL3 (ENSCJPG00005004646)	C11orf16 (ENSCJPG00005004647)	AKIP1 (ENSCJPG00005004648)	DENND2B (ENSCJPG00005004671)	RPL27A (ENSCJPG00005004683)	TRIM66 (ENSCJPG00005004687)	ENSCJPG00005004702	RIC3 (ENSCJPG00005004706)	TUB (ENSCJPG00005004714)	RRAS2 (ENSCJPG00005004729) #11	COPB1 (ENSCJPG00005004731) #13	PSMA1 (ENSCJPG00005004737) #14	PDE3B (ENSCJPG00005004739) #17	CYP2R1 (ENSCJPG00005004751) #18	CALCB (ENSCJPG00005004753) #21	INSC (ENSCJPG00005004754) #22	SOX6 (ENSCJPG00005004765) #24	C11orf58 (ENSCJPG00005005288) #26	PLEKHA7 (ENSCJPG00005005307) #27	RPS13 (ENSCJPG00005006391) #29	PIK3C2A (ENSCJPG00005006394) #30	NUCB2 (ENSCJPG00005006615) #31	KCNJ11 (ENSCJPG00005006618) #32	ABCC8 (ENSCJPG00005006650) #33	USH1C (ENSCJPG00005010751) #34	OTOG (ENSCJPG00005010752) #35	ENSCJPG00005010753	MYOD1 (ENSCJPG00005010754) #36	ENSCJPG00005010755	ENSCJPG00005010756	ENSCJPG00005010757
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00950000182999.b.a.b	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684	ENSGT00950000182885.A.a
Chicken	MODERN SPECIES	34	NRIP3 (ENSGALG00010022655)	C11orf16 (ENSGALG00010020586)	ENSGALG00010020601	DENND2B (ENSGALG00010020602)	RPL27A (ENSGALG00010020612)	TRIM66 (ENSGALG00010020629)	LMO1 (ENSGALG00010020651)	RIC3 (ENSGALG00010020655)	TUB (ENSGALG00010020692)	RRAS (ENSGALG00010020716) #11	COPB1 (ENSGALG00010023613) #13	PSMA1 (ENSGALG00010023624) #14	PDE3B (ENSGALG00010023636) #17	CYP2R1 (ENSGALG00010023724) #18	CALCA (ENSGALG00010023759) #21	INSC (ENSGALG00010022949) #22	SOX6 (ENSGALG00010023131) #24	C11orf58 (ENSGALG00010023144) #26	PLEKHA7 (ENSGALG00010023181) #27	RPS13 (ENSGALG00010023199) #29	PIK3C2A (ENSGALG00010023209) #30	NUCB2 (ENSGALG00010023238) #31	KCNJ11 (ENSGALG00010023268) #32	ABCC8 (ENSGALG00010023276) #33	ENSGALG00010023291	USH1C (ENSGALG00010025330) #34	OTOG (ENSGALG00010024347) #35	FTL (ENSGALG00010024360)	MYOD1 (ENSGALG00010024369) #36	KCNC1 (ENSGALG00010024401) #37	SERGEF (ENSGALG00010024423)
Turkey	MODERN SPECIES	25	B4GALNT4 (ENSMGAG00000002554)	PSMD13 (ENSMGAG00000002471)	ENSMGAG00000002496	IFITM5 (ENSMGAG00000002529)	ENSMGAG00000017868	ENSMGAG00000002538	ENSMGAG00000002545	ENSMGAG00000002427	ENSMGAG00000002457	ENSMGAG00000002643	ENSMGAG00000022141	ENSMGAG00000002680	ENSMGAG00000002390	ENSMGAG00000002415	ENSMGAG00000018205	ENSMGAG00000017350 #22	CALCB (ENSMGAG00000006766) #21	ENSMGAG00000006737 #18	ENSMGAG00000006695 #17	ENSMGAG00000020746 #18	PSMA1 (ENSMGAG00000006666) #14	ENSMGAG00000006566 #13	ENSMGAG00000006557 #11	ENSMGAG00000006534	ENSMGAG00000006522	ENSMGAG00000006473	ENSMGAG00000006398	ENSMGAG00000006379	ENSMGAG00000006393	ASCL3 (ENSMGAG00000021393)	NRIP3 (ENSMGAG00000006373)
African ostrich	MODERN SPECIES	960			ENSSCUG00000017930	RPL27A (ENSSCUG00000017935)	TRIM66 (ENSSCUG00000017940)	STK33 (ENSSCUG00000017943)	ENSSCUG00000017955	RIC3 (ENSSCUG00000017957)	TUB (ENSSCUG00000017962)	RRAS2 (ENSSCUG00000017968) #11	COPB1 (ENSSCUG00000017972) #13	PSMA1 (ENSSCUG00000017974) #14	PDE3B (ENSSCUG00000017977) #17	CYP2R1 (ENSSCUG00000017981) #18	CALCB (ENSSCUG00000017983) #21	INSC (ENSSCUG00000017985) #22	SOX6 (ENSSCUG00000017990) #24	C11orf58 (ENSSCUG00000018001) #26	PLEKHA7 (ENSSCUG00000018005) #27	ENSSCUG00000018014 #29	RPS13 (ENSSCUG00000018015) #29	ENSSCUG00000018016
Australian saltwater crocodile	MODERN SPECIES	64	AKIP1 (ENSCPRG00005001663)	DENND2B (ENSCPRG00005001590)	ENSCPRG00005001583	ENSCPRG00005001562	TRIM66 (ENSCPRG00005001523)	STK33 (ENSCPRG00005001516)	ENSCPRG00005001483	ENSCPRG00005001454	TUB (ENSCPRG00005001429)	ENSCPRG00005001398 #11	COPB1 (ENSCPRG00005001336) #13	PSMA1 (ENSCPRG00005001325) #14	PDE3B (ENSCPRG00005001263) #17	CYP2R1 (ENSCPRG00005001210) #18	ENSCPRG00005001195 #21	INSC (ENSCPRG00005001166) #22	SOX6 (ENSCPRG00005001080) #24	C11orf58 (ENSCPRG00005001016) #26	PLEKHA7 (ENSCPRG00005000979) #27	RPS13 (ENSCPRG00005000894) #29	PIK3C2A (ENSCPRG00005000874) #30	NUCB2 (ENSCPRG00005000844) #31	ENSCPRG00005000808	KCNJ11 (ENSCPRG00005000802) #32	ABCC8 (ENSCPRG00005000714) #33	USH1C (ENSCPRG00005000582) #34	OTOG (ENSCPRG00005000529) #35	ENSCPRG00005000446	MYOD1 (ENSCPRG00005000428) #36	KCNC1 (ENSCPRG00005000411) #37	SERGEF (ENSCPRG00005000274)
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00980000200162	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.e.a.a	ENSGT00390000005534.b.e.a.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e.g.a	ENSGT00940000163348.e.g.b	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626.d #33	ENSGT00980000200162	ENSGT00940000156626.c #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457
Emydidae	ANCESTRAL SPECIES	10	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.e.a.a	ENSGT00390000005534.b.e.a.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e.g.a	ENSGT00940000163348.e.g.b	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626.c #33	ENSGT00940000156626.d #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36
painted turtle	MODERN SPECIES	2425	RUNX1 (ENSCPBG00000005280)	SETD4 (ENSCPBG00000005262)	CBR1 (ENSCPBG00000005257)	DOP1B (ENSCPBG00000005236)	MORC3 (ENSCPBG00000005223)	CHAF1B (ENSCPBG00000005207)	CLDN14 (ENSCPBG00000005191)	SIM2 (ENSCPBG00000005184)	HLCS (ENSCPBG00000005174)	PIGP (ENSCPBG00000005152)	ENSCPBG00000005128	VPS26C (ENSCPBG00000004308)	PDE3B (ENSCPBG00000004237) #17	CYP2R1 (ENSCPBG00000004222) #18	CALCB (ENSCPBG00000004216) #21	INSC (ENSCPBG00000004208) #22	SOX6 (ENSCPBG00000004162) #24
Three-toed box turtle	MODERN SPECIES	40	AKIP1 (ENSTMTG00000001900)	DENND2B (ENSTMTG00000001845)	ENSTMTG00000001810	ENSTMTG00000001796	TRIM66 (ENSTMTG00000001764)	STK33 (ENSTMTG00000001752)	ENSTMTG00000001748	RIC3 (ENSTMTG00000001741)	TUB (ENSTMTG00000001732)	RRAS2 (ENSTMTG00000001729) #11	COPB1 (ENSTMTG00000001716) #13	PSMA1 (ENSTMTG00000001705) #14	PDE3B (ENSTMTG00000001689) #17	CYP2R1 (ENSTMTG00000001677) #18	CALCB (ENSTMTG00000001667) #21	INSC (ENSTMTG00000001576) #22	SOX6 (ENSTMTG00000001456) #24	C11orf58 (ENSTMTG00000001431) #26	PLEKHA7 (ENSTMTG00000001364) #27	RPS13 (ENSTMTG00000001339) #29	PIK3C2A (ENSTMTG00000001306) #30	NUCB2 (ENSTMTG00000001287) #31	GAL (ENSTMTG00000001271)
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.e.a.a	ENSGT00390000005534.b.e.a.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e.g.a	ENSGT00940000163348.e.g.b	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626.d #33	ENSGT00980000200162	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36
Goode s thornscrub tortoise	MODERN SPECIES	18	ENSGEVG00005005501	ENSGEVG00005005542	ENSGEVG00005005577	ENSGEVG00005007829	TRIM66 (ENSGEVG00005007913)	STK33 (ENSGEVG00005008025)	ENSGEVG00005008077	RIC3 (ENSGEVG00005008106)	TUB (ENSGEVG00005008123)	RRAS2 (ENSGEVG00005008163) #11	COPB1 (ENSGEVG00005008193) #13	PSMA1 (ENSGEVG00005008235) #14	PDE3B (ENSGEVG00005008333) #17	CYP2R1 (ENSGEVG00005008389) #18	CALCB (ENSGEVG00005008406) #21	INSC (ENSGEVG00005008452) #22	SOX6 (ENSGEVG00005008506) #24	C11orf58 (ENSGEVG00005008546) #26	PLEKHA7 (ENSGEVG00005008609) #27	RPS13 (ENSGEVG00005008637) #29	PIK3C2A (ENSGEVG00005008680) #30	NUCB2 (ENSGEVG00005008771) #31	ENSGEVG00005008800	KCNJ11 (ENSGEVG00005008823) #32	ABCC8 (ENSGEVG00005008865) #33	ENSGEVG00005009104	USH1C (ENSGEVG00005009326) #34	OTOG (ENSGEVG00005010473) #35	ENSGEVG00005010902	MYOD1 (ENSGEVG00005010944) #36	KCNC1 (ENSGEVG00005010986) #37
Abingdon island giant tortoise	MODERN SPECIES	1273														CYP2R1 (ENSCABG00000014754) #18	CALCB (ENSCABG00000014756) #21	INSC (ENSCABG00000014759) #22
Chinese turtle	MODERN SPECIES	1287													PDE3B (ENSPSIG00000010527) #17	CYP2R1 (ENSPSIG00000011738) #18	CALCB (ENSPSIG00000011846) #21	INSC (ENSPSIG00000012023) #22	ENSPSIG00000001292
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000175801.b	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00980000200162	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36
Episquamata	ANCESTRAL SPECIES		ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.c.a	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000175801.b	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00980000200162	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36
Laterata	ANCESTRAL SPECIES	2	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.c.a.b	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00920000149457	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Common wall lizard	MODERN SPECIES		TRIM66 (ENSPMRG00000004961)	ENSPMRG00000004987	STK33 (ENSPMRG00000004991)	ENSPMRG00000005005	RIC3 (ENSPMRG00000005008)	TUB (ENSPMRG00000005011)	RRAS2 (ENSPMRG00000005020) #11	COPB1 (ENSPMRG00000005032) #13	ENSPMRG00000005054 #14	ENSPMRG00000005064	PDE3B (ENSPMRG00000005069) #17	ENSPMRG00000005100	CYP2R1 (ENSPMRG00000000090) #18	CALCB (ENSPMRG00000000101) #21	ENSPMRG00000000108	INSC (ENSPMRG00000000119) #22	SOX6 (ENSPMRG00000000151) #24	C11orf58 (ENSPMRG00000000197) #26	PLEKHA7 (ENSPMRG00000000278) #27	RPS13 (ENSPMRG00000000463) #29	PIK3C2A (ENSPMRG00000001137) #30	NUCB2 (ENSPMRG00000002326) #31	ENSPMRG00000002342	KCNJ11 (ENSPMRG00000002356) #32	ABCC8 (ENSPMRG00000002883) #33	USH1C (ENSPMRG00000005026) #34	OTOG (ENSPMRG00000005049) #35	ENSPMRG00000005107	MYOD1 (ENSPMRG00000005112) #36	KCNC1 (ENSPMRG00000005116) #37	SERGEF (ENSPMRG00000005122)
Argentine black and white tegu	MODERN SPECIES	3	C11orf16 (ENSSMRG00000015022)	AKIP1 (ENSSMRG00000015019)	DENND2B (ENSSMRG00000015015)	ENSSMRG00000015013	TRIM66 (ENSSMRG00000015010)	STK33 (ENSSMRG00000015004)	ENSSMRG00000014997	RIC3 (ENSSMRG00000014996)	TUB (ENSSMRG00000014990)	RRAS2 (ENSSMRG00000014988) #11	COPB1 (ENSSMRG00000014984) #13	PSMA1 (ENSSMRG00000014981) #14	PDE3B (ENSSMRG00000014980) #17	CYP2R1 (ENSSMRG00000014975) #18	CALCB (ENSSMRG00000014973) #21	INSC (ENSSMRG00000014967) #22	ENSSMRG00000014961	SOX6 (ENSSMRG00000014958) #24	ENSSMRG00000014950	C11orf58 (ENSSMRG00000014949) #26	PLEKHA7 (ENSSMRG00000014940) #27	RPS13 (ENSSMRG00000014938) #29	PIK3C2A (ENSSMRG00000014936) #30	NUCB2 (ENSSMRG00000014933) #31	ENSSMRG00000014929	ENSSMRG00000014927	KCNJ11 (ENSSMRG00000014924) #32	ENSSMRG00000014922	ABCC8 (ENSSMRG00000014918) #33	USH1C (ENSSMRG00000014516) #34	OTOG (ENSSMRG00000014503) #35
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.d	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000175801.b	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00980000200162	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Lizard	MODERN SPECIES		SCUBE2 (ENSACAG00000009704)	NRIP3 (ENSACAG00000009845)	ENSACAG00000041730	TMEM9B (ENSACAG00000009860)	ASCL3 (ENSACAG00000009879)	ENSACAG00000044293	ENSACAG00000037548	DENND2B (ENSACAG00000009884)	ENSACAG00000035924	PDE3B (ENSACAG00000012658) #17	ENSACAG00000040161	CYP2R1 (ENSACAG00000012705) #18	CALCB (ENSACAG00000012729) #21	ENSACAG00000035660	ENSACAG00000034615	INSC (ENSACAG00000012740) #22	SOX6 (ENSACAG00000012782) #24	ENSACAG00000027158	C11orf58 (ENSACAG00000000042) #26	PLEKHA7 (ENSACAG00000000043) #27	ENSACAG00000038754	RPS13 (ENSACAG00000000044) #29	PIK3C2A (ENSACAG00000000045) #30	NUCB2 (ENSACAG00000000046) #31	KCNJ11 (ENSACAG00000000047) #32	ABCC8 (ENSACAG00000000048) #33	USH1C (ENSACAG00000000051) #34	OTOG (ENSACAG00000000052) #35	ENSACAG00000038180	ENSACAG00000037486	MYOD1 (ENSACAG00000039537) #36
Elapidae	ANCESTRAL SPECIES	3	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.d	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813.e #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00980000200162	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37	ENSGT00940000160684
Elapidae_a	ANCESTRAL SPECIES	29	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.d	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813.e #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626.f #33	ENSGT00980000200162	ENSGT00940000156626.e #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Acanthophiinae	ANCESTRAL SPECIES	29	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00390000005534.b.d	ENSGT00940000159240	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813.e #30	ENSGT00390000001927.a #31	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626.f #33	ENSGT00980000200162	ENSGT00940000156626.e #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35	ENSGT00950000182959.b.b #36	ENSGT00940000156912 #37
Eastern brown snake	MODERN SPECIES	32	ENSPTXG00000017526	DENND2B (ENSPTXG00000017527)	RPL27A (ENSPTXG00000000118)	TRIM66 (ENSPTXG00000000217)	ENSPTXG00000000250	STK33 (ENSPTXG00000000266)	ENSPTXG00000000302	RIC3 (ENSPTXG00000000328)	TUB (ENSPTXG00000000377)	RRAS2 (ENSPTXG00000000391) #11	COPB1 (ENSPTXG00000000411) #13	PSMA1 (ENSPTXG00000000454) #14	PDE3B (ENSPTXG00000000476) #17	CYP2R1 (ENSPTXG00000000493) #18	CALCB (ENSPTXG00000000580) #21	INSC (ENSPTXG00000000590) #22	SOX6 (ENSPTXG00000000601) #24	C11orf58 (ENSPTXG00000000613) #26	PLEKHA7 (ENSPTXG00000000617) #27	RPS13 (ENSPTXG00000000631) #29	PIK3C2A (ENSPTXG00000000640) #30	NUCB2 (ENSPTXG00000000649) #31	ENSPTXG00000000655	KCNJ11 (ENSPTXG00000000659) #32	ENSPTXG00000000661 #33	ENSPTXG00000000668	USH1C (ENSPTXG00000000688) #34	OTOG (ENSPTXG00000000874) #35	MYOD1 (ENSPTXG00000000885) #36	KCNC1 (ENSPTXG00000000887) #37	SERGEF (ENSPTXG00000000888)
Mainland tiger snake	MODERN SPECIES	22	ENSNSUG00000018447	DENND2B (ENSNSUG00000018442)	RPL27A (ENSNSUG00000018440)	ENSNSUG00000018438	STK33 (ENSNSUG00000018437)	ENSNSUG00000018436	ENSNSUG00000018434	ENSNSUG00000018433	TUB (ENSNSUG00000018432)	ENSNSUG00000018431	RRAS2 (ENSNSUG00000018430) #11	COPB1 (ENSNSUG00000018428) #13	PSMA1 (ENSNSUG00000018427) #14	PDE3B (ENSNSUG00000018425) #17	CYP2R1 (ENSNSUG00000018424) #18	INSC (ENSNSUG00000018421) #22	SOX6 (ENSNSUG00000018420) #24	C11orf58 (ENSNSUG00000018419) #26	PLEKHA7 (ENSNSUG00000018214) #27	RPS13 (ENSNSUG00000018197) #29	ENSNSUG00000018194 #30	ENSNSUG00000018193 #30	NUCB2 (ENSNSUG00000018192) #31	ENSNSUG00000018191	KCNJ11 (ENSNSUG00000018189) #32	ABCC8 (ENSNSUG00000018128) #33	USH1C (ENSNSUG00000018127) #34	OTOG (ENSNSUG00000018126) #35	MYOD1 (ENSNSUG00000018125) #36	KCNC1 (ENSNSUG00000018123) #37	SERGEF (ENSNSUG00000018122)
Indian cobra	MODERN SPECIES		ASCL3 (ENSNNAG00000000710)	ENSNNAG00000000699	DENND2B (ENSNNAG00000000646)	RPL27A (ENSNNAG00000000608)	TRIM66 (ENSNNAG00000000576)	STK33 (ENSNNAG00000000554)	ENSNNAG00000000532	RIC3 (ENSNNAG00000000514)	TUB (ENSNNAG00000000452)	RRAS2 (ENSNNAG00000000416) #11	COPB1 (ENSNNAG00000000393) #13	PSMA1 (ENSNNAG00000000376) #14	PDE3B (ENSNNAG00000000351) #17	CYP2R1 (ENSNNAG00000000329) #18	CALCB (ENSNNAG00000016369) #21	INSC (ENSNNAG00000016333) #22	ENSNNAG00000016327	SOX6 (ENSNNAG00000016276) #24	C11orf58 (ENSNNAG00000016255) #26	PLEKHA7 (ENSNNAG00000016200) #27	RPS13 (ENSNNAG00000016191) #29	PIK3C2A (ENSNNAG00000016104) #30	NUCB2 (ENSNNAG00000016084) #31	ENSNNAG00000016077	KCNJ11 (ENSNNAG00000016074) #32	ABCC8 (ENSNNAG00000015317) #33	USH1C (ENSNNAG00000014394) #34	OTOG (ENSNNAG00000013913) #35	MYOD1 (ENSNNAG00000013885) #36	ENSNNAG00000013869	KCNC1 (ENSNNAG00000013849) #37
tuatara	MODERN SPECIES	1176							ENSSPUG00000016705	RIC3 (ENSSPUG00000016709)	ENSSPUG00000016726	RRAS2 (ENSSPUG00000016774) #11	COPB1 (ENSSPUG00000016789) #13	PSMA1 (ENSSPUG00000016826) #14	PDE3B (ENSSPUG00000016838) #17	CYP2R1 (ENSSPUG00000016856) #18	CALCB (ENSSPUG00000016877) #21	INSC (ENSSPUG00000016891) #22
Anura	ANCESTRAL SPECIES	137	ENSGT00940000162850	ENSGT00390000012348	ENSGT00390000017064	ENSGT00950000182931.B.b	ENSGT00940000165144.b	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31
Frog	MODERN SPECIES	4	ENSXETG00000048180	dennd2b (ENSXETG00000033444)	fpgt (ENSXETG00000045459)	stk33 (ENSXETG00000040246)	ENSXETG00000034844	ENSXETG00000036519	lmo1 (ENSXETG00000042817)	ric3 (ENSXETG00000044363)	ENSXETG00000039124	tub (ENSXETG00000041967)	rras2 (ENSXETG00000048702) #11	copb1 (ENSXETG00000019682) #13	psma1 (ENSXETG00000046840) #14	cyp2r1 (ENSXETG00000043231) #18	calca (ENSXETG00000043547) #21	insc (ENSXETG00000046000) #22	pde3b (ENSXETG00000019677) #17	sox6 (ENSXETG00000016058) #24	ENSXETG00000043389	c11orf58 (ENSXETG00000043933) #26	nucb2 (ENSXETG00000043718) #31	pik3c2a (ENSXETG00000016008) #30	ENSXETG00000036232	ENSXETG00000047734	ENSXETG00000046747	ENSXETG00000041067	ENSXETG00000043535	ENSXETG00000048043	ENSXETG00000045228	XB5721468 [provisional] (ENSXETG00000046310)	ENSXETG00000043749
Leishan spiny toad	MODERN SPECIES	1	CYP2R1 (ENSLLEG00000028067) #18	PDE3B (ENSLLEG00000021083) #17	COPB1 (ENSLLEG00000021502) #13	ENSLLEG00000021841	RRAS2 (ENSLLEG00000021864) #11	ENSLLEG00000021910	ENSLLEG00000021941	TUB (ENSLLEG00000021996)	ENSLLEG00000022329	ENSLLEG00000022418	ENSLLEG00000022438	ENSLLEG00000022510	ENSLLEG00000022548	ENSLLEG00000022938 #21	ENSLLEG00000023024	INSC (ENSLLEG00000023043) #22	ENSLLEG00000023162	ENSLLEG00000023171	SOX6 (ENSLLEG00000023236) #24	ENSLLEG00000023961	ENSLLEG00000024017	ENSLLEG00000024047	ENSLLEG00000024061	ENSLLEG00000024102	ENSLLEG00000024122 #26	ENSLLEG00000024255	ENSLLEG00000024302	PLEKHA7 (ENSLLEG00000024400) #27	ENSLLEG00000024477	ENSLLEG00000024528	PIK3C2A (ENSLLEG00000024582) #30
Coelacanth	MODERN SPECIES	270	C11orf16 (ENSLACG00000017064)	AKIP1 (ENSLACG00000022522)	DENND2B (ENSLACG00000016648)	RPL27A (ENSLACG00000016622)	TRIM66 (ENSLACG00000016493)	ENSLACG00000022126	lmo1 (ENSLACG00000015190)	ENSLACG00000014501	ENSLACG00000013499	RRAS2 (ENSLACG00000013122) #11	COPB1 (ENSLACG00000012698) #13	PSMA1 (ENSLACG00000012559) #14	PDE3B (ENSLACG00000010213) #17	CYP2R1 (ENSLACG00000009943) #18	CALCB (ENSLACG00000009517) #21	INSC (ENSLACG00000005479) #22
Actinopterygii	ANCESTRAL SPECIES	36	ENSGT00950000182931.B.b	ENSGT00390000005534	ENSGT00940000159240	ENSGT00940000167685	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT01030000235062	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00530000064489	ENSGT01060000250538	ENSGT00990000203615.a.a.a.b #32	ENSGT00940000156626 #33	ENSGT00950000183002.A #34	ENSGT00940000157490 #35
Neopterygii	ANCESTRAL SPECIES	4	ENSGT00390000005534.d	ENSGT00390000005534.c.a	ENSGT00940000159240	ENSGT00940000167685	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267 #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT01030000235062	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a #31	ENSGT00530000064489	ENSGT01060000250538	ENSGT00390000009140	ENSGT00940000153438.a	ENSGT00940000160199	ENSGT00940000159662
Osteoglossocephalai	ANCESTRAL SPECIES	29	ENSGT00940000159050	ENSGT00940000153908.b.a.b	ENSGT00440000034107.a.f	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.e	ENSGT00940000158372	ENSGT00940000155328 #11	ENSGT00390000005270 #13	ENSGT00550000074855 #14	ENSGT00940000159336 #17	ENSGT00940000158305 #18	ENSGT00940000156267.ob.a.a #21	ENSGT00940000169123	ENSGT00940000156267.ob.b.a #21	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT01030000235062	ENSGT00390000000687 #26	ENSGT00940000155817.a.a #27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00390000009140	ENSGT00940000153438.a	ENSGT00940000160199	ENSGT00940000159662	ENSGT00940000156620
Clupeocephala	ANCESTRAL SPECIES	30	ENSGT00530000063822.a.b.a	ENSGT00390000003145	ENSGT00950000183011.c.a.b.f	ENSGT00990000206677	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT01030000235062	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT01060000250538	ENSGT00390000009140	ENSGT00940000153438.a.s	ENSGT00940000160199	ENSGT00940000159662.c.b
Otomorpha	ANCESTRAL SPECIES	528												ENSGT00390000005534.d	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24
Clupeiformes	ANCESTRAL SPECIES	562													ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24
Atlantic herring	MODERN SPECIES	19	FGF4 (ENSCHAG00000002235)	CCND1 (ENSCHAG00000002200)	TPCN2 (ENSCHAG00000001836)	ric8a (ENSCHAG00000000993)	psmd13 (ENSCHAG00000000194)	cox8b (ENSCHAG00000000131)	zgc:110339 (ENSCHAG00000000118)	gal (ENSCHAG00000000109)	ppp6r3 (ENSCHAG00000026549)	lrp5 (ENSCHAG00000025848)	ENSCHAG00000025777	ENSCHAG00000025775	ENSCHAG00000025770	psma1 (ENSCHAG00000025756) #14	calca (ENSCHAG00000025747) #21	INSC (ENSCHAG00000025694) #22	ENSCHAG00000025675	SOX6 (ENSCHAG00000025617) #24	TAF3 (ENSCHAG00000025602)	ENSCHAG00000025598	urahb (ENSCHAG00000025592)	ENSCHAG00000025590	ENSCHAG00000025588	GLG1 (ENSCHAG00000025445)	RFWD3 (ENSCHAG00000025392)	ctsd (ENSCHAG00000025175)	SLC6A15 (ENSCHAG00000025132)	ENSCHAG00000025123	alx1 (ENSCHAG00000025120)	RASSF9 (ENSCHAG00000025118)	ENSCHAG00000025114
Denticle herring	MODERN SPECIES	17	ANO5 (ENSDCDG00000035314)	pkp3a (ENSDCDG00000035285)	cd81b (ENSDCDG00000035277)	kcnc1b (ENSDCDG00000035270) #37	tph1a (ENSDCDG00000035083)	saal1 (ENSDCDG00000035014)	ENSDCDG00000034997	zgc:56106 (ENSDCDG00000034986) #26	PIK3C2A (ENSDCDG00000034448) #30	kptn (ENSDCDG00000034393)	crx (ENSDCDG00000034386)	gjd1a (ENSDCDG00000034384)	ENSDCDG00000034383	psma1 (ENSDCDG00000034377) #14	calca (ENSDCDG00000034372) #21	INSC (ENSDCDG00000034348) #22	ENSDCDG00000034341	SOX6 (ENSDCDG00000034338) #24	ENSDCDG00000034331	lipia (ENSDCDG00000034328)	kif20a (ENSDCDG00000034320)	cdc23 (ENSDCDG00000034307)	ENSDCDG00000034304	CDC25C (ENSDCDG00000034300)	septin15 (ENSDCDG00000034271)	wwp2 (ENSDCDG00000032965)	polr2c (ENSDCDG00000032862)	coq9 (ENSDCDG00000032857)	ciapin1 (ENSDCDG00000032853)	prmt7 (ENSDCDG00000032846)	exoc3l1 (ENSDCDG00000032840)
Otophysi	ANCESTRAL SPECIES	232	ENSGT00940000157319	ENSGT00940000158102	ENSGT00950000182832.D.a	ENSGT00950000182808.b.b	ENSGT00390000007852	ENSGT00940000158841	ENSGT00390000001116	ENSGT00940000156088.c.b	ENSGT00940000157182.g.a	ENSGT00940000158825.d	ENSGT00940000157816.a.a	ENSGT00390000005534.d	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.b.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b
Characiphysae	ANCESTRAL SPECIES	164	ENSGT00940000157319	ENSGT00940000158102	ENSGT00950000182832.D.a	ENSGT00950000182808.b.b	ENSGT00390000007852	ENSGT00940000158841	ENSGT00390000001116	ENSGT00940000156088.c.b	ENSGT00940000157182.g.a.a	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00390000005534.d	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.b.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b
Characiphysae_b	ANCESTRAL SPECIES	163	ENSGT00940000162986	ENSGT00390000015366	ENSGT00940000155010.b	ENSGT00940000157942	ENSGT00940000154635.b	ENSGT00940000157033.h	ENSGT00390000000972	ENSGT00940000157275.a	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00390000005534.d	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.b.b #21	ENSGT00940000177879	ENSGT00390000001511 #22	ENSGT00950000182939.b.b
Characoidei	ANCESTRAL SPECIES	121	ENSGT00940000162986	ENSGT00390000015366	ENSGT00940000155010.b	ENSGT00940000157942	ENSGT00940000154635.b	ENSGT00940000157033.h	ENSGT00390000000972	ENSGT00940000157275.a	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00390000005534.d	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.b.b #21	ENSGT00940000177879	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00390000014700.b.a.a	ENSGT00390000001802.ib	ENSGT00990000204217	ENSGT00940000161379	ENSGT00940000165046.a	ENSGT00390000009663	ENSGT00940000167440	ENSGT00390000009899.a.d	ENSGT00940000156574.C.x.b	ENSGT00940000153377.B	ENSGT00970000193421.C.b.i.a	ENSGT00940000154876.a.b.a	ENSGT00940000154876.a.b.b	ENSGT00530000063712.a.a.o.b.b.b
Red-bellied piranha	MODERN SPECIES	520																INSC (ENSPNAG00000012994) #22	ENSPNAG00000013007	ric8a (ENSPNAG00000013043)	psmd13 (ENSPNAG00000013099)	cox8b (ENSPNAG00000002564)	ENSPNAG00000002569	zgc:110339 (ENSPNAG00000013154)	gal (ENSPNAG00000013177)	ENSPNAG00000002613	ppp6r3 (ENSPNAG00000013224)	lrp5 (ENSPNAG00000013281)	ENSPNAG00000002691	ENSPNAG00000002698	ENSPNAG00000013319
Mexicana tetra	MODERN SPECIES	16	ENSAMXG00000043508	ENSAMXG00000039387	tmem231 (ENSAMXG00000001762)	gabarapl2 (ENSAMXG00000001752)	adat1 (ENSAMXG00000043589)	wwp2 (ENSAMXG00000001734)	frs2b (ENSAMXG00000038377)	nup160 (ENSAMXG00000039150)	TMCC3 (ENSAMXG00000042242)	ENSAMXG00000043530	FLNC (ENSAMXG00000015567)	RPL27A (ENSAMXG00000037897)	ENSAMXG00000015490	psma1 (ENSAMXG00000015455) #14	calca (ENSAMXG00000040041) #21	INSC (ENSAMXG00000020713) #22	ENSAMXG00000004737	ric8a (ENSAMXG00000042873)	psmd13 (ENSAMXG00000029954)	cox8b (ENSAMXG00000034391)	ENSAMXG00000037533	zgc:110339 (ENSAMXG00000043837)	gal (ENSAMXG00000004485)	ppp6r3 (ENSAMXG00000042684)	lrp5 (ENSAMXG00000005136)	ENSAMXG00000034325	ENSAMXG00000042631	ap3s2 (ENSAMXG00000040985)	anpepb.1 (ENSAMXG00000020798)	ANPEP (ENSAMXG00000038996)	ENSAMXG00000031726
Electric eel	MODERN SPECIES	669									nup160 (ENSEEEG00000001601)	TMCC3 (ENSEEEG00000001614)	FLNC (ENSEEEG00000001632)	RPL27A (ENSEEEG00000001810)	ENSEEEG00000001824	psma1 (ENSEEEG00000001825) #14	calca (ENSEEEG00000001829) #21	INSC (ENSEEEG00000001830) #22	ENSEEEG00000001833	ENSEEEG00000001878
Channel catfish	MODERN SPECIES	27	ap3s2 (ENSIPUG00000007583)	anpepb.1 (ENSIPUG00000007513)	ENSIPUG00000007473	chmp1a (ENSIPUG00000007424)	SLC10A3 (ENSIPUG00000007419)	Znf276 (ENSIPUG00000007391)	ENSIPUG00000007336	ENSIPUG00000007314	ENSIPUG00000007297	ENSIPUG00000007283	FLNC (ENSIPUG00000007180)	rpl27a (ENSIPUG00000007135)	Ric3 (ENSIPUG00000007114)	psma1 (ENSIPUG00000007063) #14	ENSIPUG00000007051 #21	INSC (ENSIPUG00000007025) #22	ENSIPUG00000007000	ENSIPUG00000006964	ANO1 (ENSIPUG00000006930)	ENSIPUG00000006919	ENSIPUG00000006787
Cyprinoidei	ANCESTRAL SPECIES	190			ENSGT01000000214788.c	ENSGT00940000156046	ENSGT00950000182832.D.a	ENSGT00950000182808.b.b	ENSGT00390000007852	ENSGT00940000158841	ENSGT00390000001116	ENSGT00940000156088.c.b	ENSGT00940000157182.g.a	ENSGT00390000005534.d	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.b.b #21	ENSGT00390000001511 #22
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	544	ENSGT00940000155379.g.b.a	ENSGT00940000154234.a.c.b	ENSGT01000000214788.c	ENSGT00940000156046	ENSGT00950000182832.D.a	ENSGT00950000182808.b.b	ENSGT00390000007852	ENSGT00940000158841	ENSGT00390000001116	ENSGT00940000156088.c.b.a	ENSGT00940000157182.g.a	ENSGT00390000005534.d	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.b.b #21	ENSGT00390000001511.a #22	ENSGT00440000034605
Cyprininae_a	ANCESTRAL SPECIES	418	ENSGT00940000154234.a.c.b	ENSGT01000000214788.c	ENSGT00940000156046	ENSGT00950000182832.D.a	ENSGT00940000166733	ENSGT00950000182808.b.b	ENSGT00390000007852	ENSGT00940000158841	ENSGT00390000001116	ENSGT00940000156088.c.b.a	ENSGT00940000157182.g.a	ENSGT00390000005534.d	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.a.g #21	ENSGT00390000001511.a #22	ENSGT00440000034605
Common carp reference	MODERN SPECIES	33	pdhx (ENSCCRG00000024250)	ENSCCRG00000069975	slc10a3 (ENSCCRG00000056725)	ENSCCRG00000055753	ENSCCRG00000078546	znf276 (ENSCCRG00000023211)	ENSCCRG00000066959	ENSCCRG00000040391	ENSCCRG00000025847	ENSCCRG00000070788	ENSCCRG00000039314	ENSCCRG00000078619	ENSCCRG00000068394	psma1 (ENSCCRG00000039340) #14	ENSCCRG00000040174 #21	ENSCCRG00000080192 #22	ENSCCRG00000061554	ENSCCRG00000072650	ENSCCRG00000053569	ENSCCRG00000067531	ENSCCRG00000035050	ENSCCRG00000071417	ENSCCRG00000082304	ENSCCRG00000074587	ENSCCRG00000080961	ENSCCRG00000054620	ENSCCRG00000075058	ENSCCRG00000035005	ENSCCRG00000061741	ENSCCRG00000010754	ENSCCRG00000044127
Golden-line barbel	MODERN SPECIES	1901															ENSSGRG00000002452 #21	INSC (ENSSGRG00000002450) #22
Goldfish	MODERN SPECIES	45	slc10a3 (ENSCARG00000060444)	fanca (ENSCARG00000060232)	znf276 (ENSCARG00000060213)	ENSCARG00000059970	ENSCARG00000059948	ENSCARG00000059712	ENSCARG00000059694	PTPRB (ENSCARG00000059156)	ENSCARG00000059118	ENSCARG00000059107	ANO1 (ENSCARG00000056455)	ENSCARG00000056294	ENSCARG00000056274	psma1 (ENSCARG00000056162) #14	ENSCARG00000056153 #21	INSC (ENSCARG00000056091) #22	trim44 (ENSCARG00000056066)	ENSCARG00000056052	ENSCARG00000061248	ENSCARG00000061180	ENSCARG00000061132	ENSCARG00000056180	ENSCARG00000055941	ENSCARG00000055925	ENSCARG00000055900	ENSCARG00000055891	ENSCARG00000055881	ENSCARG00000055874	ENSCARG00000055862	ENSCARG00000054679	ENSCARG00000054599
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000001511.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00390000001511.b #22
Golden-line barbel	MODERN SPECIES	1561																INSC (ENSSGRG00000012664) #22	plac8.1 (ENSSGRG00000012663)	cops4 (ENSSGRG00000012660)	lin54 (ENSSGRG00000012640)	inip (ENSSGRG00000012638)	KIAA1958 (ENSSGRG00000012636)	hsdl2 (ENSSGRG00000012554)	PTBP3 (ENSSGRG00000012515)	ugcg (ENSSGRG00000012402)	ak3 (ENSSGRG00000012400)
Euteleosteomorpha	ANCESTRAL SPECIES	96		ENSGT00990000206677	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT01030000235062	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
Protacanthopterygii	ANCESTRAL SPECIES	79									ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00440000034107.a.f	ENSGT00550000074855.lc.b #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b.c ##27	ENSGT00940000154404.a	ENSGT00390000017491.g.b #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	59	ENSGT00530000064192.j	ENSGT00390000006485.c.tc.b	ENSGT00940000153678.b.a	ENSGT00390000010961.c	ENSGT00390000010961.d	ENSGT00940000156519.p.b	ENSGT00990000206677.b	ENSGT00950000183017.b.a.a.c	ENSGT00940000157939.d.b	ENSGT00390000012348	ENSGT00390000017064.i	ENSGT00390000005534.d.b.b	ENSGT00440000034107.a.f	ENSGT00550000074855.lc.b.a #14	ENSGT00940000156267.ob.a.b.a #21	ENSGT00390000001511.c #22	ENSGT00950000182939.b.b.e	ENSGT00940000156433.B.d #24	ENSGT00390000000687.db #26	ENSGT00940000155817.a.b.c.b ##27	ENSGT01100000263547.a.b.b.a.a.b.b	ENSGT00940000154404.a.b	ENSGT00390000017491.g.b.a #29	ENSGT00940000157813.q #30	ENSGT00390000001927.a.a.d #31	ENSGT01090000260029.a.a.a.a.a.b.b.b.a.b.f.a.b.a.b.b.a	ENSGT00390000000987.m.f	ENSGT00390000000987.n.d	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a.d
Salmoninae_a	ANCESTRAL SPECIES	375														ENSGT00550000074855.lc.b.a #14	ENSGT00940000156267.ob.a.b.a #21	ENSGT00390000001511.c #22
Salmo	ANCESTRAL SPECIES	401														ENSGT00550000074855.lc.a #14	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511.c #22
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000088299	ENSSSAG00000121264	ENSSSAG00000060033	ENSSSAG00000109523	ENSSSAG00000089779	swap70b (ENSSSAG00000097886)	ENSSSAG00000111105	wee1 (ENSSSAG00000090690)	cssa10h11orf16 (ENSSSAG00000059655)	akip1 (ENSSSAG00000059641)	RPL27A (ENSSSAG00000008668)	ENSSSAG00000117004	ENSSSAG00000083269	ENSSSAG00000059477 #14	CALCB (ENSSSAG00000059372) #21	ENSSSAG00000059319 #22	ENSSSAG00000118431	ENSSSAG00000059298	SOX6 (ENSSSAG00000058528) #24	ENSSSAG00000114904	plekha7a (ENSSSAG00000058297) ##27	ENSSSAG00000082676	ENSSSAG00000058227	ENSSSAG00000118001	RPS13 (ENSSSAG00000058186) #29	ENSSSAG00000107551	ENSSSAG00000104431	ENSSSAG00000039946 #30	NUCB2 (ENSSSAG00000039009) #31	ENSSSAG00000038954	ENSSSAG00000105533
Oncorhynchus	ANCESTRAL SPECIES	10	ENSGT00390000006485.c.tc.b	ENSGT00940000153678.b.a	ENSGT01100000264511	ENSGT00390000010961.c	ENSGT00390000010961.d	ENSGT00940000156519.p.b	ENSGT00990000206677.b	ENSGT00950000183017.b.a.a.c	ENSGT00940000157939.d.b	ENSGT00390000012348	ENSGT00390000017064.i	ENSGT00390000005534.d.b.b	ENSGT00440000034107.a.f	ENSGT00550000074855.lc.b.a #14	ENSGT00940000156267.ob.a.b.a #21	ENSGT00390000001511.c #22
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000058689	ENSOMYG00000038260	ENSOMYG00000038241	ENSOMYG00000038235	ENSOMYG00000038230	swap70b (ENSOMYG00000038154)	wee1 (ENSOMYG00000038097)	ENSOMYG00000055801	ENSOMYG00000038071	akip1 (ENSOMYG00000038004)	RPL27A (ENSOMYG00000037968)	ENSOMYG00000076907	ENSOMYG00000037944	ENSOMYG00000037934 #14	CALCB (ENSOMYG00000037910) #21	INSC (ENSOMYG00000037874) #22	ENSOMYG00000069735	ENSOMYG00000037787	SOX6 (ENSOMYG00000037760) #24	ENSOMYG00000037747	zgc:56106 (ENSOMYG00000037743) #26	plekha7a (ENSOMYG00000037687) ##27	ENSOMYG00000059894	ppp1r15b (ENSOMYG00000037589)	RPS13 (ENSOMYG00000067065) #29	ENSOMYG00000031278 #30	ENSOMYG00000052044	NUCB2 (ENSOMYG00000029455) #31	ENSOMYG00000028981	tdg.1 (ENSOMYG00000028866)	ENSOMYG00000028845
Huchen	MODERN SPECIES	44	kxd1 (ENSHHUG00000011570)	ENSHHUG00000011577	ENSHHUG00000011625	TMED6 (ENSHHUG00000011833)	TMED6 (ENSHHUG00000011839)	ZDHHC7 (ENSHHUG00000011849)	ENSHHUG00000011863	swap70b (ENSHHUG00000011870)	wee1 (ENSHHUG00000011898)	ENSHHUG00000011950	akip1 (ENSHHUG00000011957)	RPL27A (ENSHHUG00000011967)	ENSHHUG00000011990	psma1 (ENSHHUG00000011994) #14	ENSHHUG00000012047 #21	INSC (ENSHHUG00000012058) #22	ENSHHUG00000012069	SOX6 (ENSHHUG00000012083) #24	zgc:56106 (ENSHHUG00000012632) #26	plekha7a (ENSHHUG00000012654) ##27	ENSHHUG00000012657	ppp1r15b (ENSHHUG00000012662)	ENSHHUG00000012680 #29	PIK3C2A (ENSHHUG00000012724) #30
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	688						ENSGT00950000183017.b.a.a.d	ENSGT00940000157939.d.a	ENSGT00940000157584.a.a	ENSGT00390000017064.j	ENSGT00390000005534.d.b.a	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00550000074855.lc.b.b #14	ENSGT00940000156267.ob.a.b.b #21	ENSGT00390000001511.d.a #22	ENSGT00950000182939.b.b.f	ENSGT00390000001511.d.b #22
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00940000153678.b.b	ENSGT01030000234567.B.a.a.b.b.a.b	ENSGT00940000156519.p.a	ENSGT00990000206677.a	ENSGT00950000183017.b.a.a.d	ENSGT00940000157939.d.a	ENSGT00940000157584.a.a	ENSGT00390000017064.j	ENSGT00390000005534.d.b.a	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00550000074855.lc.b.b #14	ENSGT00940000156267.ob.a.b.b #21	ENSGT00390000001511.d.b #22	ENSGT00390000001511.d.a #22	ENSGT00950000182939.b.b.f	ENSGT00940000156433.B.c #24	ENSGT01100000263489.a.a.b.b.f.c.b	ENSGT00390000000687.eb #26	ENSGT00940000155817.a.b.c.a ##27	ENSGT00940000154404.a.a	ENSGT00390000017491.g.b.b #29	ENSGT00940000157813.r #30	ENSGT00390000001927.a.a.c #31	ENSGT01090000260029.a.a.a.a.a.b.a	ENSGT00530000064489	ENSGT00940000158916.j	ENSGT00940000158916.i	ENSGT00940000156717.e.f	ENSGT00390000018051
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00390000006485.c.tc.a	ENSGT00940000153678.b.b	ENSGT01030000234567.B.a.a.b.b.a.b	ENSGT00940000156519.p.a	ENSGT00990000206677.a	ENSGT00950000183017.b.a.a.d	ENSGT00940000157939.d.a	ENSGT00940000157584.a.a	ENSGT00390000017064.j	ENSGT00390000005534.d.b.a	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00550000074855.lc.b.b #14	ENSGT00940000156267.ob.a.b.b #21	ENSGT00390000001511.d.a #22	ENSGT00390000001511.d.b #22	ENSGT00950000182939.b.b.e	ENSGT00940000156433.B.d #24	ENSGT00390000000687.db #26	ENSGT00940000155817.a.b.c.b ##27	ENSGT00940000154404.a.b	ENSGT00390000017491.g.b.a #29	ENSGT00940000157813.q #30	ENSGT00390000001927.a.a.d #31	ENSGT01090000260029.a.a.a.a.a.b.b.b.a.b.f.a.b.a.b.b.a	ENSGT00390000000987.m.f	ENSGT00390000000987.n.d	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a.d
Oncorhynchus_a	ANCESTRAL SPECIES	36	ENSGT00940000153678.b.b	ENSGT01030000234567.B.a.a.b.b.a.b	ENSGT00940000156519.p.a	ENSGT00990000206677.a	ENSGT00950000183017.b.a.a.d	ENSGT00940000157939.d.a	ENSGT00940000157584.a.a	ENSGT00390000017064.j	ENSGT00390000005534.d.b.a	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT01010000227758	ENSGT00550000074855.lc.b.b #14	ENSGT00940000156267.ob.a.b.b #21	ENSGT00390000001511.d.a #22	ENSGT00950000182939.b.b.f	ENSGT00940000156433.B.c #24	ENSGT01100000263489.a.a.b.b.f.c.b	ENSGT00390000000687.eb #26	ENSGT00940000155817.a.b.c.a ##27	ENSGT00940000154404.a.a	ENSGT00390000017491.g.b.b #29	ENSGT00940000157813.r #30	ENSGT00390000001927.a.a.c #31	ENSGT01090000260029.a.a.a.a.a.b.a	ENSGT00530000064489.z	ENSGT00940000158916.j	ENSGT00940000158916.i	ENSGT00940000156717.e.f	ENSGT00390000018051
Coho salmon	MODERN SPECIES	1	ENSOKIG00005011396	ENSOKIG00005011408	ZDHHC7 (ENSOKIG00005011431)	ENSOKIG00005011444	ENSOKIG00005015361	swap70b (ENSOKIG00005015377)	wee1 (ENSOKIG00005015485)	znf143b (ENSOKIG00005015829)	RPL27A (ENSOKIG00005015859)	ENSOKIG00005015946	ENSOKIG00005015964	ENSOKIG00005015983	ENSOKIG00005015988	psma1 (ENSOKIG00005015997) #14	ENSOKIG00005016032 #21	INSC (ENSOKIG00005016067) #22	ENSOKIG00005016165	SOX6 (ENSOKIG00005016319) #24	ENSOKIG00005018489	zgc:56106 (ENSOKIG00005018493) #26	plekha7a (ENSOKIG00005012977) ##27	ppp1r15b (ENSOKIG00005013335)	RPS13 (ENSOKIG00005013304) #29	PIK3C2A (ENSOKIG00005013681) #30	NUCB2 (ENSOKIG00005020153) #31	ENSOKIG00005020243	si:dkey-10o6.2 (ENSOKIG00005020311)	ENSOKIG00005020344	SLC15A5 (ENSOKIG00005020376)	ENSOKIG00005020421	hdhd5 (ENSOKIG00005020433)
Chinook salmon	MODERN SPECIES		ENSOTSG00005004094	PPIP5K1 (ENSOTSG00005004096)	ENSOTSG00005004100	rabggtb (ENSOTSG00005004103)	acadm (ENSOTSG00005004127)	RPS8 (ENSOTSG00005005706)	hectd3 (ENSOTSG00005005713)	ENSOTSG00005005869	ndc1 (ENSOTSG00005005872)	zgc:113691 (ENSOTSG00005005873)	ENSOTSG00005005875	LMO1 (ENSOTSG00005005876)	ENSOTSG00005005877	psma1 (ENSOTSG00005005883) #14	ENSOTSG00005005888 #21	INSC (ENSOTSG00005005890) #22	ENSOTSG00005005892	SOX6 (ENSOTSG00005005900) #24	ENSOTSG00005007037	zgc:56106 (ENSOTSG00005007038) #26	plekha7a (ENSOTSG00005007041) ##27	ppp1r15b (ENSOTSG00005007098)	RPS13 (ENSOTSG00005007071) #29	PIK3C2A (ENSOTSG00005007194) #30	NUCB2 (ENSOTSG00005016400) #31	ENSOTSG00005016901	si:dkey-10o6.2 (ENSOTSG00005017047)	SLC15A5 (ENSOTSG00005017049)	ENSOTSG00005017051	hdhd5 (ENSOTSG00005017054)	ccdc77 (ENSOTSG00005017056)
Salmo	ANCESTRAL SPECIES	50	ENSGT00940000153678.b.b	ENSGT01030000234567.B.a.a.b.b.a.b	ENSGT00940000156519.p.a	ENSGT00990000206677.a	ENSGT00950000183017.b.a.a.d	ENSGT00940000157939.d.a	ENSGT00940000157584.a.a	ENSGT00390000017064.j	ENSGT00390000005534.d.b.a	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f.h	ENSGT00550000074855.lc.b.b #14	ENSGT00940000156267.ob.a.b.b #21	ENSGT00390000001511.d.a #22	ENSGT00390000001511.d.b #22	ENSGT00950000182939.b.b.e	ENSGT00940000156433.B.d #24	ENSGT00390000000687.db #26	ENSGT00940000155817.a.b.c.b ##27	ENSGT01100000263547.a.b.b.a.a.b.b	ENSGT00940000154404.a.b	ENSGT00390000017491.g.b.a #29	ENSGT00940000157813.q #30	ENSGT00390000001927.a.a.d #31	ENSGT01090000260029.a.a.a.a.a.b.b.b.a.b.f.a.b.a.b.b.a.b	ENSGT00390000000987.m.f	ENSGT00390000000987.n.d	ENSGT00390000007685	ENSGT00940000154487.B
River trout	MODERN SPECIES	33	SINHCAF (ENSSTUG00000011257)	ENSSTUG00000011128	ENSSTUG00000011116	ZDHHC7 (ENSSTUG00000011110)	ENSSTUG00000027762	swap70b (ENSSTUG00000027519)	wee1 (ENSSTUG00000027444)	znf143b (ENSSTUG00000027409)	akip1 (ENSSTUG00000027399)	RPL27A (ENSSTUG00000027368)	ENSSTUG00000027352	ENSSTUG00000027342	LMO1 (ENSSTUG00000027334)	psma1 (ENSSTUG00000027249) #14	calca (ENSSTUG00000027235) #21	INSC (ENSSTUG00000027180) #22	ENSSTUG00000027134	SOX6 (ENSSTUG00000026200) #24	ENSSTUG00000026130	zgc:56106 (ENSSTUG00000026090) #26	ENSSTUG00000026072	plekha7a (ENSSTUG00000025802) ##27	ppp1r15b (ENSSTUG00000025786)	RPS13 (ENSSTUG00000025738) #29	PIK3C2A (ENSSTUG00000024644) #30	NUCB2 (ENSSTUG00000024352) #31	si:dkey-10o6.2 (ENSSTUG00000024327)	SLC15A5 (ENSSTUG00000024316)	ENSSTUG00000024235	SLC15A5 (ENSSTUG00000024208)	ENSSTUG00000024090
Salmoninae	ANCESTRAL SPECIES	688				ENSGT00950000183017.b.a.a.d	ENSGT00940000157939.d.a	ENSGT00940000157584.a.a	ENSGT00390000017064.j	ENSGT00390000005534.d.b.a	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00550000074855.lc.b.b #14	ENSGT00940000156267.ob.a.b.b #21	ENSGT00390000001511.d.a #22	ENSGT00950000182939.b.b.f	ENSGT00390000001511.d.b #22
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00390000006485.c.tc.a	ENSGT00940000153678.b.b	ENSGT01030000234567.B.a.a.b.b.a.b	ENSGT00940000156519.p.a	ENSGT00990000206677.a	ENSGT00950000183017.b.a.a.d	ENSGT00940000157939.d.a	ENSGT00940000157584.a.a	ENSGT00390000017064.j	ENSGT00390000005534.d.b.a	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00550000074855.lc.b.b #14	ENSGT00940000156267.ob.a.b.b #21	ENSGT00390000001511.d.b #22	ENSGT00390000001511.d.a #22	ENSGT00950000182939.b.b.f	ENSGT00940000156433.B.c #24	ENSGT01100000263489.a.a.b.b.f.c.b	ENSGT00390000000687.eb #26	ENSGT00940000155817.a.b.c.a ##27	ENSGT00940000154404.a.a	ENSGT00390000017491.g.b.b #29	ENSGT00940000157813.r #30	ENSGT00390000001927.a.a.c #31	ENSGT01090000260029.a.a.a.a.a.b.a	ENSGT00530000064489	ENSGT00940000158916.j	ENSGT00940000158916.i	ENSGT00940000156717.e.f
Salmo	ANCESTRAL SPECIES	50	ENSGT01030000234567.B.a.a.b.b.a.b	ENSGT00940000156519.p.a	ENSGT00990000206677.a	ENSGT00950000183017.b.a.a.d	ENSGT00940000157939.d.a	ENSGT00940000157584.a.a	ENSGT00390000017064.j	ENSGT00390000005534.d.b.a	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f.h	ENSGT00550000074855.lc.b.b #14	ENSGT00940000156267.ob.a.b.b #21	ENSGT00390000001511.d.a #22	ENSGT00390000001511.d.b #22	ENSGT00950000182939.b.b.e	ENSGT00940000156433.B.d #24	ENSGT00390000000687.db #26	ENSGT00940000155817.a.b.c.b ##27	ENSGT01100000263547.a.b.b.a.a.b.b	ENSGT00940000154404.a.b	ENSGT00390000017491.g.b.a #29	ENSGT00940000157813.q #30	ENSGT00390000001927.a.a.d #31	ENSGT01090000260029.a.a.a.a.a.b.b.b.a.b.f.a.b.a.b.b.a.b	ENSGT00390000000987.m.f	ENSGT00390000000987.n.d	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a.d
Atlantic salmon	MODERN SPECIES	15	ENSSSAG00000017906	ENSSSAG00000043738	ENSSSAG00000043768	ENSSSAG00000043779	swap70b (ENSSSAG00000079942)	ENSSSAG00000008553	znf143b (ENSSSAG00000008624)	ENSSSAG00000059594	ENSSSAG00000087153	ENSSSAG00000081960	rergl (ENSSSAG00000008758)	lmo3 (ENSSSAG00000116225)	ENSSSAG00000008790	PSA1 (ENSSSAG00000008811) #14	ENSSSAG00000008858 #21	INSC (ENSSSAG00000008922) #22	ENSSSAG00000009061	ENSSSAG00000009137 #24	ENSSSAG00000094151	zgc:56106 (ENSSSAG00000009449) #26	plekha7a (ENSSSAG00000115025) ##27	ppp1r15b (ENSSSAG00000009455)	UBIQ (ENSSSAG00000096450)	RPS13 (ENSSSAG00000009467) #29	ENSSSAG00000009533 #30	NUCB2 (ENSSSAG00000010239) #31	ENSSSAG00000120931	ENSSSAG00000106656	ENSSSAG00000089028	ENSSSAG00000100821	slc15a5 (ENSSSAG00000079888)
River trout	MODERN SPECIES	37	ENSSTUG00000018029	ENSSTUG00000018123	ENSSTUG00000020116	TMED6 (ENSSTUG00000020153)	TMED6 (ENSSTUG00000020211)	ZDHHC7 (ENSSTUG00000020233)	ENSSTUG00000020302	swap70b (ENSSTUG00000020376)	wee1 (ENSSTUG00000020466)	ENSSTUG00000020626	akip1 (ENSSTUG00000020684)	RPL27A (ENSSTUG00000020773)	ENSSTUG00000020902	psma1 (ENSSTUG00000020955) #14	calca (ENSSTUG00000021045) #21	INSC (ENSSTUG00000021120) #22	ENSSTUG00000021198	SOX6 (ENSSTUG00000021270) #24	zgc:56106 (ENSSTUG00000014424) #26	plekha7a (ENSSTUG00000014486) ##27	ENSSTUG00000014743	ppp1r15b (ENSSTUG00000014764)	RPS13 (ENSSTUG00000014784) #29	ppp1r15b (ENSSTUG00000014860)	PIK3C2A (ENSSTUG00000014992) #30	ENSSTUG00000017940	NUCB2 (ENSSTUG00000017959) #31	ENSSTUG00000018300	tdg.1 (ENSSTUG00000018309)	ENSSTUG00000018323	uqcc6 (ENSSTUG00000018338)
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000153678.b.b	ENSGT01030000234567.B.a.a.b.b.a.b	ENSGT00940000156519.p.a	ENSGT00990000206677.a	ENSGT00950000183017.b.a.a.d	ENSGT00940000157939.d.a	ENSGT00940000157584.a.a	ENSGT00390000017064.j	ENSGT00390000005534.d.b.a	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00550000074855.lc.b.b #14	ENSGT00940000156267.ob.a.b.b #21	ENSGT00390000001511.d.a #22	ENSGT00390000001511.d.b #22	ENSGT00950000182939.b.b.e	ENSGT00940000156433.B.d #24	ENSGT00390000000687.db #26	ENSGT00940000155817.a.b.c.b ##27	ENSGT00940000154404.a.b	ENSGT00390000017491.g.b.a #29	ENSGT00940000157813.q #30	ENSGT00390000001927.a.a.d #31	ENSGT01090000260029.a.a.a.a.a.b.b.b.a.b.f.a.b.a.b.b.a	ENSGT00390000000987.m.f	ENSGT00390000000987.n.d	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a.d	ENSGT00390000010991.v
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT01100000264511	ENSGT00390000010961.c	ENSGT00390000010961.d	ENSGT00940000156519.p.b	ENSGT00990000206677.b	ENSGT00950000183017.b.a.a.c	ENSGT00940000157939.d.b	ENSGT00390000012348	ENSGT00390000017064.i	ENSGT00390000005534.d.b.b	ENSGT00440000034107.a.f	ENSGT00550000074855.lc.b.a #14	ENSGT00940000156267.ob.b.a #21	ENSGT00550000074855.lc.a #14	ENSGT00940000156267.ob.a.b.a #21	ENSGT00390000001511.d.b #22	ENSGT00950000182939.b.b.e	ENSGT00940000156433.B.d #24	ENSGT00390000000687.db #26	ENSGT00940000155817.a.b.c.b ##27	ENSGT00940000154404.a.b	ENSGT00390000017491.g.b.a #29	ENSGT00940000157813.q #30	ENSGT00390000001927.a.a.d #31	ENSGT01090000260029.a.a.a.a.a.b.b.b.a.b.f.a.b.a.b.b.a	ENSGT00390000000987.m.f	ENSGT00390000000987.n.d	ENSGT00940000173873	ENSGT00940000154487.B	ENSGT00390000011355.a.d	ENSGT00390000010991.v
Coho salmon	MODERN SPECIES	14	ENSOKIG00005038668	ENSOKIG00005038692	ENSOKIG00005038730	TMED6 (ENSOKIG00005038874)	TMED6 (ENSOKIG00005038867)	ZDHHC7 (ENSOKIG00005038882)	ENSOKIG00005038899	swap70b (ENSOKIG00005038918)	wee1 (ENSOKIG00005039016)	ENSOKIG00005039518	akip1 (ENSOKIG00005039553)	ENSOKIG00005039585	ENSOKIG00005039653	ENSOKIG00005039712 #14	ENSOKIG00005039781 #21	INSC (ENSOKIG00005039804) #22	ENSOKIG00005023588	SOX6 (ENSOKIG00005023681) #24	zgc:56106 (ENSOKIG00005025005) #26	plekha7a (ENSOKIG00005025066) ##27	RPS13 (ENSOKIG00005025270) #29	ppp1r15b (ENSOKIG00005025355)	PIK3C2A (ENSOKIG00005025698) #30	NUCB2 (ENSOKIG00005030998) #31	ENSOKIG00005032071	tdg.1 (ENSOKIG00005032082)	TDG (ENSOKIG00005032096)	ENSOKIG00005032115	ENSOKIG00005032127	SAMM50 (ENSOKIG00005032297)	api5 (ENSOKIG00005032354)
Chinook salmon	MODERN SPECIES	10	ENSOTSG00005034423	ENSOTSG00005034455	ENSOTSG00005035565	TMED6 (ENSOTSG00005035567)	TMED6 (ENSOTSG00005035569)	ZDHHC7 (ENSOTSG00005035570)	ENSOTSG00005035571	swap70b (ENSOTSG00005035573)	wee1 (ENSOTSG00005035632)	ENSOTSG00005035780	akip1 (ENSOTSG00005035782)	RPL27A (ENSOTSG00005035783)	ENSOTSG00005035787	psma1 (ENSOTSG00005035788) #14	calca (ENSOTSG00005035802) #21	INSC (ENSOTSG00005035820) #22	ENSOTSG00005035838	SOX6 (ENSOTSG00005035842) #24	zgc:56106 (ENSOTSG00005035845) #26	plekha7a (ENSOTSG00005035853) ##27	ENSOTSG00005035859	ppp1r15b (ENSOTSG00005035861)	RPS13 (ENSOTSG00005035860) #29	PIK3C2A (ENSOTSG00005035876) #30	NUCB2 (ENSOTSG00005039770) #31	ENSOTSG00005039927	tdg.1 (ENSOTSG00005039928)	TDG (ENSOTSG00005039930)	ENSOTSG00005039932	ENSOTSG00005039933	samm50 (ENSOTSG00005039936)
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000030612	ENSOMYG00000030600	ENSOMYG00000069435	swap70b (ENSOMYG00000033333)	ENSOMYG00000062389	wee1 (ENSOMYG00000033416)	znf143b (ENSOMYG00000033424)	akip1 (ENSOMYG00000033460)	ENSOMYG00000033472	ENSOMYG00000033486	ENSOMYG00000033497	ENSOMYG00000033509	ENSOMYG00000060857	PSA1 (ENSOMYG00000033518) #14	calcb (ENSOMYG00000033548) #21	INSC (ENSOMYG00000033585) #22	ENSOMYG00000033630	SOX6 (ENSOMYG00000033644) #24	ENSOMYG00000033668	ENSOMYG00000064798	zgc:56106 (ENSOMYG00000033671) #26	plekha7a (ENSOMYG00000033719) ##27	ppp1r15b (ENSOMYG00000033838)	rs13 (ENSOMYG00000033854) #29	ENSOMYG00000033916 #30	NUCB2 (ENSOMYG00000034639) #31	ENSOMYG00000074299	ENSOMYG00000024743	ENSOMYG00000057475	ENSOMYG00000024770	ENSOMYG00000024785
Huchen	MODERN SPECIES	3852																INSC (ENSHHUG00000041044) #22
Northern pike	MODERN SPECIES	18	ZDHHC7 (ENSELUG00000004491)	ENSELUG00000004476	swap70b (ENSELUG00000000131)	wee1 (ENSELUG00000004431)	znf143b (ENSELUG00000004396)	ENSELUG00000004301	ENSELUG00000004274	rpl27a (ENSELUG00000004255)	ENSELUG00000004182	ENSELUG00000004163	LMO1 (ENSELUG00000004146)	ENSELUG00000004139	psma1 (ENSELUG00000004125) #14	psma1 (ENSELUG00000029926) #14	calca (ENSELUG00000004082) #21	INSC (ENSELUG00000004057) #22	ENSELUG00000004024	SOX6 (ENSELUG00000003978) #24	ENSELUG00000003929	zgc:56106 (ENSELUG00000003917) #26	plekha7a (ENSELUG00000003839) ##27	ppp1r15b (ENSELUG00000003638)	rps13 (ENSELUG00000003617) #29	PIK3C2A (ENSELUG00000003559) #30	NUCB2 (ENSELUG00000003528) #31	ENSELUG00000028049	ENSELUG00000003501	ENSELUG00000005206	si:dkey-10o6.2 (ENSELUG00000003488)	ENSELUG00000003474	ENSELUG00000003441
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT01030000235062	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685
Cod	MODERN SPECIES	22	RASSF8 (ENSGMOG00000036850)	bhlhe41 (ENSGMOG00000030017)	ENSGMOG00000010581	ENSGMOG00000023787	ENSGMOG00000010586	ENSGMOG00000022673	swap70b (ENSGMOG00000001846)	ENSGMOG00000001872	znf143b (ENSGMOG00000001888)	ENSGMOG00000033339	ENSGMOG00000005197	ENSGMOG00000036709	ENSGMOG00000013846	ENSGMOG00000013869 #14	ENSGMOG00000014128 #21	INSC (ENSGMOG00000013258) #22	ENSGMOG00000000639	ENSGMOG00000033841 #24	ENSGMOG00000032813	ENSGMOG00000036302	zgc:56106 (ENSGMOG00000004363) #26	plekha7a (ENSGMOG00000035520) ##27	ENSGMOG00000022312	ppp1r15b (ENSGMOG00000024001)	ENSGMOG00000010481 #30	ENSGMOG00000026171	ENSGMOG00000025505	ENSGMOG00000027210	ENSGMOG00000006479	ENSGMOG00000023587	ENSGMOG00000029958
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000154395.a.a.b.b.g.a	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000154395.a.a.b.b.g.a	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT01040000243095	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000154395.a.a.b.b.g.a	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00990000213920	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT01040000243095	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT01100000263516.a.b.b.b.a.a.a.a.a.b.b.b	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT01100000263516.a.b.b.b.a.a.a.a.a.b.b.b	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00940000170442	ENSGT00940000174915	ENSGT00950000182999.b.a.b	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT01100000263516.a.b.b.b.a.a.a.a.a.b.b.b	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685
Bicolor damselfish	MODERN SPECIES	257	rnf141 (ENSSPAG00000000363)	AMPD3 (ENSSPAG00000000332)	ENSSPAG00000000319	swap70b (ENSSPAG00000000256)	wee1 (ENSSPAG00000000243)	znf143b (ENSSPAG00000000191)	ENSSPAG00000000166	ENSSPAG00000000150	akip1 (ENSSPAG00000000148)	RPL27A (ENSSPAG00000000134)	ENSSPAG00000000123	LMO1 (ENSSPAG00000000116)	ENSSPAG00000021443	psma1 (ENSSPAG00000021415) #14	ENSSPAG00000021397 #21	INSC (ENSSPAG00000021352) #22	ENSSPAG00000021327	SOX6 (ENSSPAG00000021302) #24	zgc:56106 (ENSSPAG00000021285) #26	ENSSPAG00000021232	plekha7a (ENSSPAG00000021142) ##27	ppp1r15b (ENSSPAG00000021120)	rps13 (ENSSPAG00000021104) #29	PIK3C2A (ENSSPAG00000021003) #30	nucb2b (ENSSPAG00000020970) #31	si:dkey-10o6.2 (ENSSPAG00000020962)	ENSSPAG00000020946	ENSSPAG00000020911	tdg.1 (ENSSPAG00000020904)	ENSSPAG00000020888	uqcc6 (ENSSPAG00000020874)
Pomacentridae_A	ANCESTRAL SPECIES	9	ENSGT00390000003145	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT01100000263516.a.b.b.b.a.a.a.a.a.b.b.b	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685
Amphiprion	ANCESTRAL SPECIES	4	ENSGT00390000003145.o	ENSGT00390000003145.p	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT01100000263516.a.b.b.b.a.a.a.a.a.b.b.b	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685
Clown anemonefish	MODERN SPECIES	1668																INSC (ENSAOCG00000004764) #22	ENSAOCG00000004738	SOX6 (ENSAOCG00000000178) #24	C11orf58 (ENSAOCG00000004691) #26	ENSAOCG00000004680	plekha7a (ENSAOCG00000004650) ##27	MCM8 (ENSAOCG00000004582)	crls1 (ENSAOCG00000004541)
Orange clownfish	MODERN SPECIES	18	ENSAPEG00000009822	swap70b (ENSAPEG00000009831)	wee1 (ENSAPEG00000009913)	znf143b (ENSAPEG00000010116)	ENSAPEG00000010136	ENSAPEG00000010149	MGAT4C (ENSAPEG00000010176)	rnf141 (ENSAPEG00000010191)	akip1 (ENSAPEG00000010204)	RPL27A (ENSAPEG00000010223)	ENSAPEG00000010422	LMO1 (ENSAPEG00000010484)	RIC3 (ENSAPEG00000010497)	psma1 (ENSAPEG00000010541) #14	calca (ENSAPEG00000010575) #21	INSC (ENSAPEG00000010584) #22	ENSAPEG00000010641	SOX6 (ENSAPEG00000010659) #24	zgc:56106 (ENSAPEG00000010754) #26	ENSAPEG00000010764	plekha7a (ENSAPEG00000010793) ##27	ENSAPEG00000010828	ppp1r15b (ENSAPEG00000010983)	rps13 (ENSAPEG00000010993) #29	PIK3C2A (ENSAPEG00000011014) #30	nucb2b (ENSAPEG00000011177) #31	si:dkey-10o6.2 (ENSAPEG00000011246)	ENSAPEG00000011290	ENSAPEG00000011439	tdg.1 (ENSAPEG00000011460)	ENSAPEG00000011509
Spiny chromis	MODERN SPECIES	779					waca (ENSAPOG00000012273)	ENSAPOG00000012287	ENSAPOG00000012306	ENSAPOG00000012314	akip1 (ENSAPOG00000012323)	RPL27A (ENSAPOG00000012340)	ENSAPOG00000012344	LMO1 (ENSAPOG00000012351)	ENSAPOG00000012359	psma1 (ENSAPOG00000012410) #14	calca (ENSAPOG00000012424) #21	INSC (ENSAPOG00000012491) #22	ENSAPOG00000012540	mibp2 (ENSAPOG00000012545)
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00390000003145.r	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
Haplochromini	ANCESTRAL SPECIES		ENSGT00390000003145.r	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
Burton s mouthbrooder	MODERN SPECIES	458	rnf141 (ENSHBUG00000016594)	AMPD3 (ENSHBUG00000016666)	ENSHBUG00000016679	swap70b (ENSHBUG00000016750)	wee1 (ENSHBUG00000016789)	znf143b (ENSHBUG00000016832)	ENSHBUG00000016844	akip1 (ENSHBUG00000016852)	RPL27A (ENSHBUG00000016890)	ENSHBUG00000016917	ENSHBUG00000016925	LMO1 (ENSHBUG00000016942)	ENSHBUG00000016953	psma1 (ENSHBUG00000016992) #14	calca (ENSHBUG00000017017) #21	INSC (ENSHBUG00000017060) #22	ENSHBUG00000017096	SOX6 (ENSHBUG00000017138) #24	zgc:56106 (ENSHBUG00000017165) #26	plekha7a (ENSHBUG00000017224) ##27
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00390000003145.r	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000175367	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
P. nyererei	MODERN SPECIES	338	rnf141 (ENSPNYG00000011730)	rnf141 (ENSPNYG00000011716)	AMPD3 (ENSPNYG00000011677)	ENSPNYG00000011657	swap70b (ENSPNYG00000011638)	wee1 (ENSPNYG00000011445)	znf143b (ENSPNYG00000011385)	ENSPNYG00000011341	akip1 (ENSPNYG00000011299)	RPL27A (ENSPNYG00000011262)	ENSPNYG00000011235	LMO1 (ENSPNYG00000011214)	ENSPNYG00000011171	psma1 (ENSPNYG00000011130) #14	ENSPNYG00000011042 #21	INSC (ENSPNYG00000011006) #22	ENSPNYG00000010991	SOX6 (ENSPNYG00000010962) #24	zgc:56106 (ENSPNYG00000010952) #26	plekha7a (ENSPNYG00000010903) ##27	ppp1r15b (ENSPNYG00000010887)	rps13 (ENSPNYG00000010866) #29	PIK3C2A (ENSPNYG00000010764) #30	nucb2b (ENSPNYG00000010721) #31	si:dkey-10o6.2 (ENSPNYG00000010698)	ENSPNYG00000010610	ENSPNYG00000010594	tdg.1 (ENSPNYG00000010567)	ENSPNYG00000010553	uqcc6 (ENSPNYG00000010538)	ENSPNYG00000010525
Haplochromini_B	ANCESTRAL SPECIES	20	ENSGT00390000003145.r	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000175367.k	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
Zebra mbuna	MODERN SPECIES	1110	AMPD3 (ENSMZEG00005012706)	ENSMZEG00005012698	swap70b (ENSMZEG00005012672)	wee1 (ENSMZEG00005012653)	znf143b (ENSMZEG00005012629)	ENSMZEG00005012608	ENSMZEG00005012582	akip1 (ENSMZEG00005012574)	RPL27A (ENSMZEG00005012555)	ENSMZEG00005012537	ENSMZEG00005012529	LMO1 (ENSMZEG00005012518)	ENSMZEG00005012512	psma1 (ENSMZEG00005012488) #14	calca (ENSMZEG00005012468) #21	INSC (ENSMZEG00005012414) #22	ENSMZEG00005012378	SOX6 (ENSMZEG00005012292) #24	zgc:56106 (ENSMZEG00005012236) #26	plekha7a (ENSMZEG00005012123) ##27	ppp1r15b (ENSMZEG00005012093)	rps13 (ENSMZEG00005012076) #29	PIK3C2A (ENSMZEG00005012057) #30	nucb2b (ENSMZEG00005012040) #31	si:dkey-10o6.2 (ENSMZEG00005012018)	ENSMZEG00005011995	ENSMZEG00005011966	tdg.1 (ENSMZEG00005011957)	ENSMZEG00005011935	uqcc6 (ENSMZEG00005011915)	ENSMZEG00005011903
Eastern happy	MODERN SPECIES	19	rnf141 (ENSACLG00000021861)	AMPD3 (ENSACLG00000021890)	ENSACLG00000021978	swap70b (ENSACLG00000021993)	wee1 (ENSACLG00000022056)	znf143b (ENSACLG00000022179)	ENSACLG00000022240	akip1 (ENSACLG00000022265)	RPL27A (ENSACLG00000022272)	ENSACLG00000022297	ENSACLG00000022306	LMO1 (ENSACLG00000022315)	ENSACLG00000022389	psma1 (ENSACLG00000022405) #14	calca (ENSACLG00000022432) #21	INSC (ENSACLG00000022457) #22	ENSACLG00000022535	SOX6 (ENSACLG00000022566) #24	zgc:56106 (ENSACLG00000022680) #26	plekha7a (ENSACLG00000022690) ##27	ppp1r15b (ENSACLG00000022755)	rps13 (ENSACLG00000022765) #29	PIK3C2A (ENSACLG00000022821) #30	nucb2b (ENSACLG00000022976) #31	si:dkey-10o6.2 (ENSACLG00000023011)	ENSACLG00000023034	ENSACLG00000023055	tdg.1 (ENSACLG00000023067)	ENSACLG00000023076	ENSACLG00000023111	ENSACLG00000023121
Lyretail cichlid	MODERN SPECIES	293	rnf141 (ENSNBRG00000015147)	rnf141 (ENSNBRG00000015162)	ENSNBRG00000015180	ENSNBRG00000015219	swap70b (ENSNBRG00000015233)	wee1 (ENSNBRG00000015270)	znf143b (ENSNBRG00000015381)	ENSNBRG00000015435	ENSNBRG00000015446	RPL27A (ENSNBRG00000015457)	ENSNBRG00000015477	LMO1 (ENSNBRG00000015499)	ENSNBRG00000015516	psma1 (ENSNBRG00000015546) #14	calca (ENSNBRG00000015567) #21	INSC (ENSNBRG00000015577) #22	ENSNBRG00000015600	SOX6 (ENSNBRG00000015613) #24	zgc:56106 (ENSNBRG00000015646) #26	plekha7a (ENSNBRG00000015656) ##27	ENSNBRG00000015714	rps13 (ENSNBRG00000015738) #29	PIK3C2A (ENSNBRG00000015757) #30	NUCB2 (ENSNBRG00000015817) #31	si:dkey-10o6.2 (ENSNBRG00000015840)	ENSNBRG00000015860	ENSNBRG00000015919	tdg.1 (ENSNBRG00000015950)	ENSNBRG00000015970	uqcc6 (ENSNBRG00000015995)	ENSNBRG00000016000
Nile tilapia	MODERN SPECIES	19	swap70b (ENSONIG00000015517)	wee1 (ENSONIG00000015520)	znf143b (ENSONIG00000015524)	ENSONIG00000015526	ENSONIG00000028369	akip1 (ENSONIG00000027960)	RPL27A (ENSONIG00000015528)	ENSONIG00000029319	ENSONIG00000030031	ENSONIG00000027789	ENSONIG00000015529	LMO1 (ENSONIG00000038583)	RIC3 (ENSONIG00000039030)	psma1 (ENSONIG00000031434) #14	calca (ENSONIG00000015534) #21	INSC (ENSONIG00000015535) #22	ENSONIG00000015537	SOX6 (ENSONIG00000015539) #24	lg7h11orf58 (ENSONIG00000036699) #26	plekha7a (ENSONIG00000015546) ##27	ENSONIG00000037593 ##27	ppp1r15b (ENSONIG00000031107)	rps13 (ENSONIG00000030703) #29	PIK3C2A (ENSONIG00000015560) #30	nucb2b (ENSONIG00000015568) #31	si:dkey-10o6.2 (ENSONIG00000015572)	ENSONIG00000015573	ENSONIG00000015580	tdg.1 (ENSONIG00000015582)	ENSONIG00000015586	ENSONIG00000015588
Midas cichlid	MODERN SPECIES	1023				ENSACIG00000000885	swap70b (ENSACIG00000000850)	wee1 (ENSACIG00000000823)	znf143b (ENSACIG00000000775)	ENSACIG00000000753	ENSACIG00000000748	RPL27A (ENSACIG00000000729)	ENSACIG00000000693	LMO1 (ENSACIG00000000676)	ENSACIG00000000639	psma1 (ENSACIG00000000615) #14	ENSACIG00000000510 #21	INSC (ENSACIG00000000468) #22	ENSACIG00000000432	SOX6 (ENSACIG00000000378) #24	zgc:56106 (ENSACIG00000000297) #26	plekha7a (ENSACIG00000000231) ##27	ppp1r15b (ENSACIG00000000206)	rps13 (ENSACIG00000024123) #29	PIK3C2A (ENSACIG00000024120) #30	ENSACIG00000024118	nucb2b (ENSACIG00000024116) #31	si:dkey-10o6.2 (ENSACIG00000024115)	ENSACIG00000024114
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT01040000243095	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
Oryzias	ANCESTRAL SPECIES	16	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00940000154487.B	ENSGT00390000011355.a
Oryzias_b	ANCESTRAL SPECIES	58	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00940000154487.B	ENSGT00390000011355.a
Indian medaka	MODERN SPECIES	15	ENSOMEG00000002938	ENSOMEG00000002944	swap70b (ENSOMEG00000002971)	wee1 (ENSOMEG00000002981)	znf143b (ENSOMEG00000002987)	ENSOMEG00000002997	akip1 (ENSOMEG00000003002)	RPL27A (ENSOMEG00000003017)	ENSOMEG00000003029	ENSOMEG00000003039	LMO1 (ENSOMEG00000003041)	ENSOMEG00000003053	psma1 (ENSOMEG00000003080) #14	ENSOMEG00000000800 #21	calca (ENSOMEG00000003098) #21	INSC (ENSOMEG00000003184) #22	ENSOMEG00000003250	ENSOMEG00000003257	SOX6 (ENSOMEG00000003292) #24	zgc:56106 (ENSOMEG00000003309) #26	plekha7a (ENSOMEG00000003430) ##27	ppp1r15b (ENSOMEG00000003463)	rps13 (ENSOMEG00000003476) #29	PIK3C2A (ENSOMEG00000003564) #30	NUCB2 (ENSOMEG00000003601) #31	si:dkey-10o6.2 (ENSOMEG00000003617)	ENSOMEG00000003635	ENSOMEG00000003652	tdg.1 (ENSOMEG00000003666)	ENSOMEG00000003695	ENSOMEG00000003710
Javanese ricefish	MODERN SPECIES	20	rnf141 (ENSOJAG00000010385)	ENSOJAG00000010473	ENSOJAG00000011568	swap70b (ENSOJAG00000011578)	wee1 (ENSOJAG00000011604)	znf143b (ENSOJAG00000011672)	ENSOJAG00000011769	akip1 (ENSOJAG00000011782)	RPL27A (ENSOJAG00000011788)	ENSOJAG00000011804	ENSOJAG00000011819	LMO1 (ENSOJAG00000011834)	ENSOJAG00000011843	psma1 (ENSOJAG00000011853) #14	calca (ENSOJAG00000011976) #21	INSC (ENSOJAG00000012039) #22	ENSOJAG00000012107	ENSOJAG00000012116	ENSOJAG00000012138	SOX6 (ENSOJAG00000012327) #24	ENSOJAG00000014060 #26	ENSOJAG00000014123	st7 (ENSOJAG00000015077)	wnt2 (ENSOJAG00000016719)	ENSOJAG00000016734	cftr (ENSOJAG00000016798)	CTTNBP2 (ENSOJAG00000017043)	ENSOJAG00000017060	ENSOJAG00000017088	ENSOJAG00000017129	BET1L (ENSOJAG00000017508)
Oryzias_a	ANCESTRAL SPECIES	1	ENSGT00390000003145	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00940000154487.B	ENSGT00390000011355.a
Japanese Medaka HdrR	MODERN SPECIES	20	rnf141 (ENSORLG00000001041)	ENSORLG00000001060	admb (ENSORLG00000024948)	swap70b (ENSORLG00000001090)	wee1 (ENSORLG00000001112)	znf143b (ENSORLG00000001130)	ENSORLG00000029613	akip1 (ENSORLG00000001136)	RPL27A (ENSORLG00000001144)	ENSORLG00000027321	ENSORLG00000022671	ENSORLG00000028708	ENSORLG00000001171	psma1 (ENSORLG00000001217) #14	calcb (ENSORLG00000001222) #21	INSC (ENSORLG00000001249) #22	ENSORLG00000026711	ENSORLG00000001252	sox6a (ENSORLG00000001260) #24	zgc:56106 (ENSORLG00000001266) #26	plekha7a (ENSORLG00000001278) ##27	ppp1r15b (ENSORLG00000028887)	rps13 (ENSORLG00000001289) #29	PIK3C2A (ENSORLG00000001292) #30	NUCB2 (ENSORLG00000001308) #31	ENSORLG00000023056	si:dkey-10o6.2 (ENSORLG00000001314)	ENSORLG00000024238	ENSORLG00000029635	tdg.1 (ENSORLG00000029322)	ENSORLG00000001329
Chinese medaka	MODERN SPECIES	490		MGAT4C (ENSOSIG00000020311)	AMPD3 (ENSOSIG00000018564)	rnf141 (ENSOSIG00000018436)	ENSOSIG00000018432	swap70b (ENSOSIG00000018423)	wee1 (ENSOSIG00000018346)	znf143b (ENSOSIG00000018317)	ENSOSIG00000018303	ENSOSIG00000018300	ENSOSIG00000018298	ENSOSIG00000018297	ENSOSIG00000018294	psma1 (ENSOSIG00000018278) #14	calca (ENSOSIG00000018266) #21	INSC (ENSOSIG00000018194) #22	ENSOSIG00000018166	SOX6 (ENSOSIG00000016311) #24	zgc:56106 (ENSOSIG00000016269) #26	plekha7a (ENSOSIG00000016264) ##27	ppp1r15b (ENSOSIG00000016252)	rps13 (ENSOSIG00000016249) #29	PIK3C2A (ENSOSIG00000008861) #30	nucb2b (ENSOSIG00000008553) #31	si:dkey-10o6.2 (ENSOSIG00000008552)	ENSOSIG00000008551	ENSOSIG00000008549	tdg.1 (ENSOSIG00000008548)	TDG (ENSOSIG00000008547)	ENSOSIG00000008545	samm50 (ENSOSIG00000008038)
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT01040000243095	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT01040000243095	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
NAME_4	ANCESTRAL SPECIES	65	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000170442	ENSGT00940000174915	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT01040000243095	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
Mummichog	MODERN SPECIES	2196	ENSFHEG00000020458	swap70b (ENSFHEG00000020438)	wee1 (ENSFHEG00000020363)	znf143b (ENSFHEG00000020316)	ENSFHEG00000020209	ENSFHEG00000020194	akip1 (ENSFHEG00000020168)	RPL27A (ENSFHEG00000020156)	ENSFHEG00000020135	ENSFHEG00000020123	LMO1 (ENSFHEG00000020097)	ENSFHEG00000020092	ENSFHEG00000020076	psma1 (ENSFHEG00000020056) #14	calca (ENSFHEG00000020027) #21	INSC (ENSFHEG00000020021) #22	ENSFHEG00000020001	SOX6 (ENSFHEG00000019974) #24	zgc:56106 (ENSFHEG00000019887) #26	plekha7a (ENSFHEG00000019864) ##27	ppp1r15b (ENSFHEG00000019836)	rps13 (ENSFHEG00000019826) #29	PIK3C2A (ENSFHEG00000019808) #30	nucb2b (ENSFHEG00000019578) #31	si:dkey-10o6.2 (ENSFHEG00000019035)	ENSFHEG00000018997	tdg.1 (ENSFHEG00000018960)	ENSFHEG00000018954	uqcc6 (ENSFHEG00000018903)	ENSFHEG00000018898	samm50 (ENSFHEG00000018891)
Sheepshead minnow	MODERN SPECIES	426														ENSCVAG00000014644 #21	calca (ENSCVAG00000014655) #21	INSC (ENSCVAG00000014673) #22	ENSCVAG00000014678	SOX6 (ENSCVAG00000014781) #24	zgc:56106 (ENSCVAG00000014800) #26	plekha7a (ENSCVAG00000014914) ##27	ppp1r15b (ENSCVAG00000014927)	rps13 (ENSCVAG00000014949) #29	PIK3C2A (ENSCVAG00000015016) #30	nucb2b (ENSCVAG00000015047) #31	si:dkey-10o6.2 (ENSCVAG00000015074)	ENSCVAG00000015083	RPL27A (ENSCVAG00000015215)	ENSCVAG00000015222	ENSCVAG00000015231	LMO1 (ENSCVAG00000015248)	RIC3 (ENSCVAG00000015251)
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
Poecilia	ANCESTRAL SPECIES	5	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
NAME_6	ANCESTRAL SPECIES	161	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24
Amazon molly	MODERN SPECIES	435	AMPD3 (ENSPFOG00000009513)	ENSPFOG00000009484	swap70b (ENSPFOG00000009310)	wee1 (ENSPFOG00000009148)	znf143b (ENSPFOG00000008911)	ENSPFOG00000008846	ENSPFOG00000024256	akip1 (ENSPFOG00000008831)	RPL27A (ENSPFOG00000008792)	ENSPFOG00000022509	ENSPFOG00000008716	LMO1 (ENSPFOG00000008681)	ENSPFOG00000008644	psma1 (ENSPFOG00000008506) #14	calca (ENSPFOG00000008479) #21	INSC (ENSPFOG00000008301) #22	ENSPFOG00000008127	SOX6 (ENSPFOG00000007860) #24	dnai4 (ENSPFOG00000007690)
Sailfin molly	MODERN SPECIES	429										ENSPLAG00000014662	LMO1 (ENSPLAG00000014676)	ENSPLAG00000014680	psma1 (ENSPLAG00000014710) #14	ENSPLAG00000014718 #21	calca (ENSPLAG00000014725) #21	INSC (ENSPLAG00000014749) #22	ENSPLAG00000014787	SOX6 (ENSPLAG00000014837) #24	ENSPLAG00000014860
Guppy	MODERN SPECIES	458	MGAT4C (ENSPREG00000003936)	AMPD3 (ENSPREG00000003949)	rnf141 (ENSPREG00000004005)	ENSPREG00000004022	swap70b (ENSPREG00000004034)	wee1 (ENSPREG00000004058)	znf143b (ENSPREG00000004094)	ENSPREG00000004178	ENSPREG00000004194	RPL27A (ENSPREG00000004202)	ENSPREG00000004228	ENSPREG00000004253	LMO1 (ENSPREG00000004279)	ENSPREG00000004334	psma1 (ENSPREG00000004345) #14	INSC (ENSPREG00000004374) #22	ENSPREG00000004411	SOX6 (ENSPREG00000004455) #24	zgc:56106 (ENSPREG00000004524) #26	plekha7a (ENSPREG00000004576) ##27	ppp1r15b (ENSPREG00000004701)	rps13 (ENSPREG00000004718) #29	PIK3C2A (ENSPREG00000004760) #30	nucb2b (ENSPREG00000004893) #31	si:dkey-10o6.2 (ENSPREG00000005108)	ENSPREG00000005141	ENSPREG00000005170	ENSPREG00000005199	ENSPREG00000005225	ENSPREG00000005381	ENSPREG00000005391
Platyfish	MODERN SPECIES	11	MGAT4C (ENSXMAG00000012726)	rnf141 (ENSXMAG00000012730)	AMPD3 (ENSXMAG00000012734)	ENSXMAG00000027868	swap70b (ENSXMAG00000012747)	wee1 (ENSXMAG00000012766)	znf143b (ENSXMAG00000005152)	akip1 (ENSXMAG00000005177)	RPL27A (ENSXMAG00000005178)	ENSXMAG00000026181	ENSXMAG00000012811	LMO1 (ENSXMAG00000012829)	ENSXMAG00000029930	psma1 (ENSXMAG00000025977) #14	calca (ENSXMAG00000028956) #21	INSC (ENSXMAG00000012891) #22	ENSXMAG00000012892	SOX6 (ENSXMAG00000012894) #24	plex9.2 (ENSXMAG00000012944)	mpi (ENSXMAG00000012946)	scamp2 (ENSXMAG00000012952)	ENSXMAG00000023853	PPIP5K1 (ENSXMAG00000012976)	ENSXMAG00000012577	hapln3 (ENSXMAG00000030033)	mfge8b (ENSXMAG00000013036)	ABHD2 (ENSXMAG00000013057)	rlbp1b (ENSXMAG00000002347)	ENSXMAG00000013066	pdia3 (ENSXMAG00000013069)	CKMT1A (ENSXMAG00000013099)
Aplocheiloidei	ANCESTRAL SPECIES	86										ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.b.a #21	ENSGT00940000156267.nb #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
Mangrove rivulus	MODERN SPECIES	323										ENSKMAG00000010781	LMO1 (ENSKMAG00000010798)	ENSKMAG00000010811	psma1 (ENSKMAG00000010831) #14	calca (ENSKMAG00000010862) #21	ENSKMAG00000010874 #21	INSC (ENSKMAG00000010900) #22	ENSKMAG00000010929	SOX6 (ENSKMAG00000010977) #24
Turquoise killifish	MODERN SPECIES	618																INSC (ENSNFUG00015013010) #22
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT01040000243095	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000154395.a.a.b.b.g.a	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00990000213920	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT01040000243095	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000154395.a.a.b.b.g.a	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00990000213920	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n
Tetraodontidae	ANCESTRAL SPECIES	11	ENSGT00940000155352.gb.a.b	ENSGT00390000003145	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22
Tetraodon	MODERN SPECIES	4	rnf141 (ENSTNIG00000013733)	rnf141 (ENSTNIG00000013734)	AMPD3 (ENSTNIG00000013735)	ENSTNIG00000013736	swap70b (ENSTNIG00000013737)	wee1 (ENSTNIG00000013738)	znf143b (ENSTNIG00000013739)	akip1 (ENSTNIG00000002466)	RPL27A (ENSTNIG00000013740)	ENSTNIG00000013741	ENSTNIG00000013742	LMO1 (ENSTNIG00000013743)	ENSTNIG00000000372	psma1 (ENSTNIG00000013744) #14	ENSTNIG00000013745 #21	INSC (ENSTNIG00000013746) #22	ENSTNIG00000013747	lamb1a (ENSTNIG00000013748)	ENSTNIG00000013749	nup160 (ENSTNIG00000013750)	ENSTNIG00000013751	ENSTNIG00000013752	mdkb (ENSTNIG00000013753)	DGKZ (ENSTNIG00000013754)	PHF21A (ENSTNIG00000013755)	ENSTNIG00000002691	ENSTNIG00000002690 ##32	ENSTNIG00000002689 ##32	ENSTNIG00000002688	actr6 (ENSTNIG00000002687)	sycp3 (ENSTNIG00000002686)
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT01040000243095	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000154395.a.a.b.b.g.a	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00990000213920	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n
Ballan wrasse	MODERN SPECIES	88	TDG (ENSLBEG00000003928)	tdg.1 (ENSLBEG00000003900)	ENSLBEG00000003864	si:dkey-10o6.2 (ENSLBEG00000003839)	si:dkey-10o6.2 (ENSLBEG00000003823)	NUCB2 (ENSLBEG00000003757) #31	PIK3C2A (ENSLBEG00000003665) #30	rps13 (ENSLBEG00000003582) #29	ppp1r15b (ENSLBEG00000003568)	ENSLBEG00000003552	ENSLBEG00000003512	LMO1 (ENSLBEG00000003498)	ENSLBEG00000003478	psma1 (ENSLBEG00000003435) #14	calca (ENSLBEG00000003384) #21	INSC (ENSLBEG00000003325) #22	ENSLBEG00000003277	SOX6 (ENSLBEG00000003199) #24	zgc:56106 (ENSLBEG00000003165) #26	ENSLBEG00000003133	plekha7a (ENSLBEG00000003078) ##27	RPL27A (ENSLBEG00000003001)	akip1 (ENSLBEG00000002987)	ENSLBEG00000002963	ENSLBEG00000002925	znf143b (ENSLBEG00000002857)	wee1 (ENSLBEG00000002801)	swap70b (ENSLBEG00000002734)	ENSLBEG00000002706	AMPD3 (ENSLBEG00000002640)	rnf141 (ENSLBEG00000002599)
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT01040000243095	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00990000213920	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685
Perciformes	ANCESTRAL SPECIES	7	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000175367	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT01040000243095	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00990000213920	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00390000003145	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000175367	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00990000213920	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685
Channel bull blenny	MODERN SPECIES	20	rnf141 (ENSCGOG00000007061)	ENSCGOG00000007058	AMPD3 (ENSCGOG00000004797)	ENSCGOG00000004728	swap70b (ENSCGOG00000004389)	wee1 (ENSCGOG00000004017)	znf143b (ENSCGOG00000003715)	ENSCGOG00000010048	akip1 (ENSCGOG00000010046)	RPL27A (ENSCGOG00000010041)	ENSCGOG00000010037	LMO1 (ENSCGOG00000010012)	ENSCGOG00000010011	psma1 (ENSCGOG00000010008) #14	calca (ENSCGOG00000010003) #21	INSC (ENSCGOG00000009999) #22	ENSCGOG00000009992	SOX6 (ENSCGOG00000009718) #24	zgc:56106 (ENSCGOG00000009695) #26	ENSCGOG00000009687	ENSCGOG00000009684	plekha7a (ENSCGOG00000009625) ##27	ppp1r15b (ENSCGOG00000009620)	rps13 (ENSCGOG00000009608) #29	PIK3C2A (ENSCGOG00000006820) #30	ENSCGOG00000006736 #31	si:dkey-10o6.2 (ENSCGOG00000006731)	ENSCGOG00000006716	ENSCGOG00000006709	tdg.1 (ENSCGOG00000006696)	ENSCGOG00000006690
Pike perch	MODERN SPECIES	126	rnf141 (ENSSLUG00000020744)	ENSSLUG00000019775	ENSSLUG00000019719	swap70b (ENSSLUG00000019710)	wee1 (ENSSLUG00000019693)	znf143b (ENSSLUG00000019539)	ENSSLUG00000019529	akip1 (ENSSLUG00000019525)	RPL27A (ENSSLUG00000019503)	ENSSLUG00000019500	ENSSLUG00000019498	LMO1 (ENSSLUG00000019494)	ENSSLUG00000019491	psma1 (ENSSLUG00000019477) #14	ENSSLUG00000019475 #21	INSC (ENSSLUG00000019459) #22	ENSSLUG00000019455	ENSSLUG00000019152 #24	zgc:56106 (ENSSLUG00000019132) #26	ENSSLUG00000019128	plekha7a (ENSSLUG00000019108) ##27	ppp1r15b (ENSSLUG00000019103)	ENSSLUG00000019099	rps13 (ENSSLUG00000019096) #29	PIK3C2A (ENSSLUG00000016130) #30	nucb2b (ENSSLUG00000015799) #31	si:dkey-10o6.2 (ENSSLUG00000015774)	ENSSLUG00000015755	ENSSLUG00000015743	tdg.1 (ENSSLUG00000015734)	ENSSLUG00000015694
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT01040000243095	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
Stickleback	MODERN SPECIES	14	scamp5a (ENSGACG00000006326)	ENSGACG00000006340	ube2q2 (ENSGACG00000006341)	ENSGACG00000006351	nptna (ENSGACG00000006370)	pkmb (ENSGACG00000006393)	PARP6 (ENSGACG00000006502)	cox5aa (ENSGACG00000006516)	ENSGACG00000006521	RPL27A (ENSGACG00000006523)	ENSGACG00000006553	LMO1 (ENSGACG00000006564)	ENSGACG00000006576	psma1 (ENSGACG00000006582) #14	ENSGACG00000006623 #21	INSC (ENSGACG00000006624) #22	ENSGACG00000006644	SOX6 (ENSGACG00000006649) #24	zgc:56106 (ENSGACG00000006659) #26	plekha7a (ENSGACG00000006687) ##27	ppp1r15b (ENSGACG00000006701)	rps13 (ENSGACG00000006703) #29	PIK3C2A (ENSGACG00000006738) #30	nucb2b (ENSGACG00000006759) #31	si:dkey-10o6.2 (ENSGACG00000006806)	tdg.1 (ENSGACG00000006809)	TDG (ENSGACG00000006810)	samm50 (ENSGACG00000006822)	api5 (ENSGACG00000006871)	ENSGACG00000006927	hsd17b12a (ENSGACG00000006929)
Lumpfish	MODERN SPECIES	21	AMPD3 (ENSCLMG00005016850)	ENSCLMG00005019341	swap70b (ENSCLMG00005019343)	wee1 (ENSCLMG00005019374)	znf143b (ENSCLMG00005019384)	ENSCLMG00005019387	ENSCLMG00005019388	akip1 (ENSCLMG00005019390)	RPL27A (ENSCLMG00005019391)	ENSCLMG00005019394	LMO1 (ENSCLMG00005019395)	ENSCLMG00005019398	ENSCLMG00005019400	psma1 (ENSCLMG00005019403) #14	CALCB (ENSCLMG00005019404) #21	INSC (ENSCLMG00005019405) #22	ENSCLMG00005019407	SOX6 (ENSCLMG00005019425) #24	zgc:56106 (ENSCLMG00005019426) #26	plekha7a (ENSCLMG00005019430) ##27	ppp1r15b (ENSCLMG00005019465)	rps13 (ENSCLMG00005019467) #29	PIK3C2A (ENSCLMG00005019490) #30	nucb2b (ENSCLMG00005020629) #31	si:dkey-10o6.2 (ENSCLMG00005020638)	ENSCLMG00005020641	ENSCLMG00005020643	tdg.1 (ENSCLMG00005020737)	ENSCLMG00005020739	uqcc6 (ENSCLMG00005020750)	ENSCLMG00005020751
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000175367	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a
European seabass	MODERN SPECIES	19	rnf141 (ENSDLAG00005014249)	ENSDLAG00005012536	ENSDLAG00005012501	swap70b (ENSDLAG00005012485)	wee1 (ENSDLAG00005012417)	znf143b (ENSDLAG00005012372)	ENSDLAG00005012358	ENSDLAG00005012346	akip1 (ENSDLAG00005027367)	ENSDLAG00005012270	ENSDLAG00005012257	ENSDLAG00005032153	ENSDLAG00005012239	ENSDLAG00005012225 #14	CALCB (ENSDLAG00005012207) #21	INSC (ENSDLAG00005012174) #22	ENSDLAG00005012150	SOX6 (ENSDLAG00005010452) #24	zgc:56106 (ENSDLAG00005010384) #26	plekha7a (ENSDLAG00005010199) ##27	ppp1r15b (ENSDLAG00005010177)	PIK3C2A (ENSDLAG00005005054) #30	ENSDLAG00005004823 #31	ENSDLAG00005004804	ENSDLAG00005004787	ENSDLAG00005031369	tdg.1 (ENSDLAG00005004775)	ENSDLAG00005004656	uqcc6 (ENSDLAG00005030725)	ENSDLAG00005029880	ENSDLAG00005004253
Large yellow croaker	MODERN SPECIES	481	rnf141 (ENSLCRG00005015376)	AMPD3 (ENSLCRG00005015400)	ENSLCRG00005016593	swap70b (ENSLCRG00005016599)	wee1 (ENSLCRG00005016602)	znf143b (ENSLCRG00005016624)	ENSLCRG00005016628	akip1 (ENSLCRG00005016629)	RPL27A (ENSLCRG00005016630)	ENSLCRG00005016632	ENSLCRG00005016634	LMO1 (ENSLCRG00005016635)	ENSLCRG00005016638	psma1 (ENSLCRG00005016639) #14	calca (ENSLCRG00005016645) #21	INSC (ENSLCRG00005016648) #22	ENSLCRG00005016666	SOX6 (ENSLCRG00005016695) #24	C11orf58 (ENSLCRG00005018033) #26	HECTD2 (ENSLCRG00005018040)	ppp1r3ca (ENSLCRG00005018058)	ENSLCRG00005018059	ENSLCRG00005018064	ENSLCRG00005018097	cyp26c1 (ENSLCRG00005018099)	ENSLCRG00005018101	AIFM2 (ENSLCRG00005018118)	elovl6l (ENSLCRG00005018120)	ENSLCRG00005018121	nfkb2 (ENSLCRG00005018123)	glud1a (ENSLCRG00005018127)
Gilthead seabream	MODERN SPECIES	22	rnf141 (ENSSAUG00010002571)	AMPD3 (ENSSAUG00010000681)	ENSSAUG00010000577	swap70b (ENSSAUG00010000572)	wee1 (ENSSAUG00010000524)	znf143b (ENSSAUG00010000491)	ENSSAUG00010025316	akip1 (ENSSAUG00010025314)	RPL27A (ENSSAUG00010025311)	ENSSAUG00010025309	ENSSAUG00010025307	LMO1 (ENSSAUG00010025306)	ENSSAUG00010025304	psma1 (ENSSAUG00010025303) #14	calca (ENSSAUG00010025301) #21	INSC (ENSSAUG00010025300) #22	ENSSAUG00010025298	SOX6 (ENSSAUG00010024944) #24	zgc:56106 (ENSSAUG00010024924) #26	ENSSAUG00010024921	plekha7a (ENSSAUG00010024894) ##27	ppp1r15b (ENSSAUG00010024885)	BET1L (ENSSAUG00010024882)	PIK3C2A (ENSSAUG00010022979) #30	nucb2b (ENSSAUG00010022913) #31	si:dkey-10o6.2 (ENSSAUG00010022903)	ENSSAUG00010022902	ENSSAUG00010022900	tdg.1 (ENSSAUG00010022898)	TDG (ENSSAUG00010022895)	ENSSAUG00010022892
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000154395.a.a.b.b.g.a	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00990000213920	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n
Carangaria	ANCESTRAL SPECIES	6	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000154395.a.a.b.b.g.a	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685
Carangaria_A	ANCESTRAL SPECIES		ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000154395.a.a.b.b.g.a	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491.f #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685
Seriola	ANCESTRAL SPECIES	5	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00940000174915	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00940000156267.nb #21	ENSGT00940000156267.ob.b.a #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000154395.a.a.b.b.g.a	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491.f #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685
Greater amberjack	MODERN SPECIES	86	AMPD3 (ENSSDUG00000001715)	ENSSDUG00000001692	swap70b (ENSSDUG00000001645)	wee1 (ENSSDUG00000001626)	znf143b (ENSSDUG00000001569)	ENSSDUG00000001555	ENSSDUG00000001542	akip1 (ENSSDUG00000001537)	RPL27A (ENSSDUG00000001490)	ENSSDUG00000001473	ENSSDUG00000001459	LMO1 (ENSSDUG00000001437)	ENSSDUG00000001428	psma1 (ENSSDUG00000001400) #14	ENSSDUG00000001386 #21	INSC (ENSSDUG00000001329) #22	ENSSDUG00000001299	SOX6 (ENSSDUG00000001265) #24	zgc:56106 (ENSSDUG00000001256) #26	ENSSDUG00000001239	plekha7a (ENSSDUG00000001180) ##27	ppp1r15b (ENSSDUG00000001169)	rps13 (ENSSDUG00000001148) #29	PIK3C2A (ENSSDUG00000001026) #30	nucb2b (ENSSDUG00000000974) #31	si:dkey-10o6.2 (ENSSDUG00000000943)	ENSSDUG00000000931	ENSSDUG00000000892	tdg.1 (ENSSDUG00000000881)	TDG (ENSSDUG00000000776)	uqcc6 (ENSSDUG00000000763)
Yellowtail amberjack	MODERN SPECIES	2263												ENSSLDG00000004232	psma1 (ENSSLDG00000004189) #14	ENSSLDG00000004166 #21	calca (ENSSLDG00000004145) #21	INSC (ENSSLDG00000004057) #22	ENSSLDG00000004002	SOX6 (ENSSLDG00000003929) #24	zgc:56106 (ENSSLDG00000003904) #26	ENSSLDG00000003870	plekha7a (ENSSLDG00000003811) ##27	ppp1r15b (ENSSLDG00000003789)	rps13 (ENSSLDG00000003767) #29	ENSSLDG00000003736	PIK3C2A (ENSSLDG00000003573) #30	nucb2b (ENSSLDG00000003500) #31	si:dkey-10o6.2 (ENSSLDG00000003462)	ENSSLDG00000003457	ENSSLDG00000003384	tdg.1 (ENSSLDG00000003368)	TDG (ENSSLDG00000003349)
Barramundi perch	MODERN SPECIES	407			swap70b (ENSLCAG00010002712)	wee1 (ENSLCAG00010002734)	znf143b (ENSLCAG00010002772)	ENSLCAG00010002774	ENSLCAG00010002777	akip1 (ENSLCAG00010002781)	RPL27A (ENSLCAG00010002788)	ENSLCAG00010002808	ENSLCAG00010002812	LMO1 (ENSLCAG00010002817)	ENSLCAG00010002820	psma1 (ENSLCAG00010002824) #14	calca (ENSLCAG00010002828) #21	INSC (ENSLCAG00010002835) #22	ENSLCAG00010002838	SOX6 (ENSLCAG00010002885) #24	zgc:56106 (ENSLCAG00010002994) #26	ENSLCAG00010002998	ENSLCAG00010002999
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00940000170442	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B
Turbot	MODERN SPECIES	1	ENSSMAG00000018708	ENSSMAG00000018716	ENSSMAG00000018534	swap70b (ENSSMAG00000018537)	wee1 (ENSSMAG00000018566)	znf143b (ENSSMAG00000018583)	ENSSMAG00000018598	akip1 (ENSSMAG00000018617)	RPL27A (ENSSMAG00000018624)	ENSSMAG00000018651	ENSSMAG00000033153	ENSSMAG00000000298	RIC3 (ENSSMAG00000026542)	ENSSMAG00000000257 #14	CALCB (ENSSMAG00000035174) #21	INSC (ENSSMAG00000000222) #22	ENSSMAG00000000206	SOX6 (ENSSMAG00000000116) #24	zgc:56106 (ENSSMAG00000000111) #26	plekha7a (ENSSMAG00000019321) ##27	ppp1r15b (ENSSMAG00000025866)	RPS13 (ENSSMAG00000032090) #29	ENSSMAG00000019114 #30	NUCB2 (ENSSMAG00000019040) #31	ENSSMAG00000019016	ENSSMAG00000019003	ENSSMAG00000018980	tdg.1 (ENSSMAG00000018974)	ENSSMAG00000018941	uqcc6 (ENSSMAG00000028392)	ENSSMAG00000018922
Tongue sole	MODERN SPECIES	16	cfdp1 (ENSCSEG00000001361)	gal (ENSCSEG00000001348)	pard6a (ENSCSEG00000001342)	ENSCSEG00000001338	wee1 (ENSCSEG00000001192)	znf143b (ENSCSEG00000001176)	ENSCSEG00000001167	akip1 (ENSCSEG00000001162)	RPL27A (ENSCSEG00000001155)	ENSCSEG00000001150	ENSCSEG00000001146	LMO1 (ENSCSEG00000001141)	ENSCSEG00000001138	psma1 (ENSCSEG00000001130) #14	ENSCSEG00000001118 #21	INSC (ENSCSEG00000001105) #22	ENSCSEG00000001093	ENSCSEG00000001084 #24	zgc:56106 (ENSCSEG00000001080) #26	plekha7a (ENSCSEG00000000999) ##27	ppp1r15b (ENSCSEG00000000987)	rps13 (ENSCSEG00000000978) #29	PIK3C2A (ENSCSEG00000000943) #30	nucb2b (ENSCSEG00000000931) #31	si:dkey-10o6.2 (ENSCSEG00000000927)	si:dkey-10o6.2 (ENSCSEG00000000918)	ENSCSEG00000000909	ENSCSEG00000000899	tdg.1 (ENSCSEG00000000885)	uqcc6 (ENSCSEG00000000881)	ENSCSEG00000000877
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000012348	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT01100000263516.a.b.b.b.a.a.a.a.a.b.b.b	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00990000213920	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n
Zig-zag eel	MODERN SPECIES	20	rnf141 (ENSMAMG00000022945)	ENSMAMG00000022946	ENSMAMG00000022948	swap70b (ENSMAMG00000022950)	wee1 (ENSMAMG00000022953)	znf143b (ENSMAMG00000022956)	ENSMAMG00000022961	ENSMAMG00000025058	akip1 (ENSMAMG00000022964)	RPL27A (ENSMAMG00000022967)	ENSMAMG00000022970	ENSMAMG00000022973	ENSMAMG00000027783	ENSMAMG00000022977 #14	CALCB (ENSMAMG00000022980) #21	INSC (ENSMAMG00000022982) #22	ENSMAMG00000022985	SOX6 (ENSMAMG00000022988) #24	C11orf58 (ENSMAMG00000025384) #26	plekha7a (ENSMAMG00000022999) ##27	ppp1r15b (ENSMAMG00000023001)	RPS13 (ENSMAMG00000023002) #29	ENSMAMG00000023008 #30	NUCB2 (ENSMAMG00000023017) #31	ENSMAMG00000027513	ENSMAMG00000023028	ENSMAMG00000023030	ENSMAMG00000023032	ENSMAMG00000023034	ENSMAMG00000023035	ENSMAMG00000023038
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00390000003145	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b	ENSGT00390000017064	ENSGT00390000005534.d	ENSGT00940000165144.b	ENSGT00940000167685.b	ENSGT00940000153908.b.a.a	ENSGT00440000034107.a.f	ENSGT00550000074855 #14	ENSGT00940000156267.ob.a.b #21	ENSGT00390000001511 #22	ENSGT00950000182939.b.b	ENSGT00940000156433.B #24	ENSGT00390000000687 #26	ENSGT01100000263516.a.b.b.b.a.a.a.a.a.b.b.b	ENSGT00940000155817.a.b ##27	ENSGT00940000154404.a	ENSGT00990000213920	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a #31	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n
Climbing perch	MODERN SPECIES	19	rnf141 (ENSATEG00000029463)	ENSATEG00000001052	ENSATEG00000001039	swap70b (ENSATEG00000000982)	wee1 (ENSATEG00000000973)	znf143b (ENSATEG00000000922)	ENSATEG00000000912	akip1 (ENSATEG00000000905)	ENSATEG00000000881	ENSATEG00000000867	ENSATEG00000026459	ENSATEG00000000853	ENSATEG00000000845	ENSATEG00000000798 #14	ENSATEG00000000625 #21	INSC (ENSATEG00000000619) #22	ENSATEG00000000584	ENSATEG00000000497 #24	zgc:56106 (ENSATEG00000000491) #26	ENSATEG00000000474	plekha7a (ENSATEG00000000354) ##27	ppp1r15b (ENSATEG00000000346)	ENSATEG00000027041	RPS13 (ENSATEG00000000336) #29	ENSATEG00000000175 #30	NUCB2 (ENSATEG00000000106) #31	ENSATEG00000027801	ENSATEG00000028262	ENSATEG00000025526	ENSATEG00000021929	tdg.1 (ENSATEG00000021912)
Siamese fighting fish	MODERN SPECIES	17	rnf141 (ENSBSLG00000018526)	AMPD3 (ENSBSLG00000018559)	ENSBSLG00000019520	swap70b (ENSBSLG00000019534)	wee1 (ENSBSLG00000019648)	znf143b (ENSBSLG00000019679)	ENSBSLG00000019684	akip1 (ENSBSLG00000019686)	RPL27A (ENSBSLG00000019687)	ENSBSLG00000019698	ENSBSLG00000019707	LMO1 (ENSBSLG00000019711)	ENSBSLG00000019716	psma1 (ENSBSLG00000019724) #14	ENSBSLG00000019730 #21	INSC (ENSBSLG00000019738) #22	ENSBSLG00000019886	SOX6 (ENSBSLG00000019938) #24	zgc:56106 (ENSBSLG00000000487) #26	plekha7a (ENSBSLG00000000579) ##27	ppp1r15b (ENSBSLG00000000674)	ENSBSLG00000000688	ENSBSLG00000000694 #30	ENSBSLG00000000701	ENSBSLG00000000715	tdg.1 (ENSBSLG00000000725)	ENSBSLG00000000733	ENSBSLG00000000735	samm50 (ENSBSLG00000000743)	api5 (ENSBSLG00000000828)	ENSBSLG00000001192
Tiger tail seahorse	MODERN SPECIES	446	MGAT4C (ENSHCOG00000016739)	rnf141 (ENSHCOG00000016755)	AMPD3 (ENSHCOG00000016796)	ENSHCOG00000016814	swap70b (ENSHCOG00000016844)	wee1 (ENSHCOG00000016868)	znf143b (ENSHCOG00000016884)	akip1 (ENSHCOG00000016894)	RPL27A (ENSHCOG00000016904)	ENSHCOG00000016912	ENSHCOG00000016939	LMO1 (ENSHCOG00000017112)	ENSHCOG00000017145	psma1 (ENSHCOG00000017183) #14	calca (ENSHCOG00000017198) #21	INSC (ENSHCOG00000017229) #22	ENSHCOG00000017260	SOX6 (ENSHCOG00000017297) #24	zgc:56106 (ENSHCOG00000017313) #26	plekha7a (ENSHCOG00000017363) ##27	ppp1r15b (ENSHCOG00000017381)	rps13 (ENSHCOG00000017397) #29	PIK3C2A (ENSHCOG00000017566) #30	NUCB2 (ENSHCOG00000017598) #31	si:dkey-10o6.2 (ENSHCOG00000017626)	si:dkey-10o6.2 (ENSHCOG00000017671)	ENSHCOG00000017692	tdg.1 (ENSHCOG00000017715)	TDG (ENSHCOG00000017729)	uqcc6 (ENSHCOG00000017737)	ENSHCOG00000017756
Pinecone sodierfish	MODERN SPECIES	20	SLC38A8 (ENSMMDG00005000587)	mbtps1 (ENSMMDG00005000710)	pskh1 (ENSMMDG00005002062)	NRN1L (ENSMMDG00005002068)	edc4 (ENSMMDG00005002120)	nutf2 (ENSMMDG00005003497)	ENSMMDG00005003500	ranbp10 (ENSMMDG00005003529)	RPL27A (ENSMMDG00005005745)	ENSMMDG00005005757	ENSMMDG00005005764	LMO1 (ENSMMDG00005005773)	RIC3 (ENSMMDG00005005784)	psma1 (ENSMMDG00005005815) #14	calca (ENSMMDG00005006002) #21	INSC (ENSMMDG00005006028) #22	ENSMMDG00005006032	SOX6 (ENSMMDG00005006036) #24	zgc:56106 (ENSMMDG00005006043) #26	ENSMMDG00005006047	plekha7a (ENSMMDG00005006053) ##27	ppp1r15b (ENSMMDG00005006057)	rps13 (ENSMMDG00005006060) #29	PIK3C2A (ENSMMDG00005006131) #30	nucb2b (ENSMMDG00005009715) #31	si:dkey-10o6.2 (ENSMMDG00005009781)	si:dkey-10o6.2 (ENSMMDG00005009792)	si:dkey-10o6.2 (ENSMMDG00005009796)	si:dkey-10o6.2 (ENSMMDG00005009797)	ENSMMDG00005009800	ENSMMDG00005009803
Osteoglossiformes	ANCESTRAL SPECIES	63										ENSGT01000000218727	ENSGT00390000005270.c #13	ENSGT00550000074855.fc #14	ENSGT00940000159336.i #17	ENSGT00940000158305 #18	ENSGT00940000156267.ob.a.a #21	ENSGT00390000001511 #22	ENSGT00940000156433.A.a ##24	ENSGT00390000000687 #26	ENSGT00940000155817.a.a.a #27	ENSGT00940000154404.a	ENSGT00390000017491 #29	ENSGT00940000157813 #30	ENSGT00390000001927.a.a.a #31	ENSGT00530000064489	ENSGT00390000009140	ENSGT00940000153438.a.v	ENSGT00940000160199	ENSGT00940000159662.b	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00390000017249.f
P. kingsleyae	MODERN SPECIES	121						lmo1 (ENSPKIG00000023434)	ENSPKIG00000023448	TUB (ENSPKIG00000023477)	rras2 (ENSPKIG00000023509) #11	ENSPKIG00000023524	copb1 (ENSPKIG00000023542) #13	psma1 (ENSPKIG00000023584) #14	PDE3B (ENSPKIG00000023608) #17	CYP2R1 (ENSPKIG00000023638) #18	calca (ENSPKIG00000023649) #21	INSC (ENSPKIG00000023663) #22	sox6 (ENSPKIG00000023705) ##24	zgc:56106 (ENSPKIG00000023721) #26	PLEKHA7 (ENSPKIG00000023791) #27	rps13 (ENSPKIG00000023950) #29	PIK3C2A (ENSPKIG00000024007) #30	nucb2b (ENSPKIG00000024097) #31	si:dkey-10o6.2 (ENSPKIG00000024109)	ENSPKIG00000024126	ppme1 (ENSPKIG00000024142)	ucp3 (ENSPKIG00000024166)	ucp2 (ENSPKIG00000024180)	dnajb13 (ENSPKIG00000024195)	mrpl48 (ENSPKIG00000024210)	ENSPKIG00000024232	plekhb1 (ENSPKIG00000024269)
Asian bonytongue	MODERN SPECIES	11	ENSSFOG00015014193	dennd2b (ENSSFOG00015014216)	RPL27A (ENSSFOG00015027419)	TRIM66 (ENSSFOG00015014289)	rerglb (ENSSFOG00015014306)	lmo1 (ENSSFOG00015014329)	RIC3 (ENSSFOG00015033214)	TUB (ENSSFOG00015014362)	rras2 (ENSSFOG00015029650) #11	copb1 (ENSSFOG00015014478) #13	psma1 (ENSSFOG00015014611) #14	PDE3B (ENSSFOG00015014668) #17	CYP2R1 (ENSSFOG00015014699) #18	CALCB (ENSSFOG00015014710) #21	ENSSFOG00015027885	INSC (ENSSFOG00015014732) #22	sox6 (ENSSFOG00015014803) ##24	zgc:56106 (ENSSFOG00015027929) #26	PLEKHA7 (ENSSFOG00015014920) #27	ppp1r15b (ENSSFOG00015015152)	rps13 (ENSSFOG00015015170) #29	PIK3C2A (ENSSFOG00015015207) #30	nucb2b (ENSSFOG00015015319) #31	si:dkey-10o6.2 (ENSSFOG00015015345)	nat10 (ENSSFOG00015015371)	CAPRIN1 (ENSSFOG00015015517)	lmo2 (ENSSFOG00015016035)	ALX4 (ENSSFOG00015016047)	ENSSFOG00015026473	commd3 (ENSSFOG00015027725)	bmi1a (ENSSFOG00015016092)
Spotted gar	MODERN SPECIES	666	AKIP1 (ENSLOCG00000003390)	dennd2b (ENSLOCG00000003366)	RPL27A (ENSLOCG00000003356)	TRIM66 (ENSLOCG00000003340)	rerglb (ENSLOCG00000003313)	stk33 (ENSLOCG00000003301)	lmo1 (ENSLOCG00000003286)	RIC3 (ENSLOCG00000003266)	TUB (ENSLOCG00000003233)	rras2 (ENSLOCG00000003220) #11	copb1 (ENSLOCG00000003198) #13	psma1 (ENSLOCG00000003163) #14	PDE3B (ENSLOCG00000003151) #17	CYP2R1 (ENSLOCG00000003133) #18	calca (ENSLOCG00000003120) #21	INSC (ENSLOCG00000003105) #22	ENSLOCG00000003091	SOX6 (ENSLOCG00000003065) #24	zgc:56106 (ENSLOCG00000003054) #26	PLEKHA7 (ENSLOCG00000003006) #27	ppp1r15b (ENSLOCG00000002993)	rps13 (ENSLOCG00000002984) #29	PIK3C2A (ENSLOCG00000002963) #30	nucb2b (ENSLOCG00000002925) #31	nat10 (ENSLOCG00000002896)	caprin1b (ENSLOCG00000002861)	lmo2 (ENSLOCG00000002844)	alx4b (ENSLOCG00000002829)	ext2 (ENSLOCG00000002809)	tspan18b (ENSLOCG00000002791)	cd82b (ENSLOCG00000002767)
Reedfish	MODERN SPECIES	10	ext2 (ENSECRG00000003453)	cd82b (ENSECRG00000003471)	tspan18b (ENSECRG00000003485)	tp53i11b (ENSECRG00000003497)	lrp5 (ENSECRG00000003521)	ENSECRG00000003568	kmt5b (ENSECRG00000003582)	chka (ENSECRG00000003601)	rras2 (ENSECRG00000003612) #11	copb1 (ENSECRG00000003626) #13	psma1 (ENSECRG00000003640) #14	PDE3B (ENSECRG00000003651) #17	CYP2R1 (ENSECRG00000003679) #18	calca (ENSECRG00000003688) #21	ENSECRG00000003694 #21	INSC (ENSECRG00000003699) #22	ENSECRG00000003710	SOX6 (ENSECRG00000003717) #24	C11orf58 (ENSECRG00000003724) #26	PLEKHA7 (ENSECRG00000003752) #27	rps13 (ENSECRG00000003804) #29	PIK3C2A (ENSECRG00000003812) #30	nucb2b (ENSECRG00000003824) #31	si:dkey-10o6.2 (ENSECRG00000003829)	ENSECRG00000003833	ENSECRG00000003836	ENSECRG00000003840	kcnj11 (ENSECRG00000003846) #32	abcc8 (ENSECRG00000003935) #33	ush1c (ENSECRG00000000542) #34	MYOD1 (ENSECRG00000000567) ##36
Elephant shark	MODERN SPECIES	1493	ENSCMIG00000014745	dennd2b (ENSCMIG00000014626)	rpl27a (ENSCMIG00000014594)	ENSCMIG00000014590	rerglb (ENSCMIG00000014588)	stk33 (ENSCMIG00000014572)	lmo1 (ENSCMIG00000014539)	ENSCMIG00000014533	TUB (ENSCMIG00000014521)	rras2 (ENSCMIG00000014508) #11	copb1 (ENSCMIG00000014496) #13	psma1 (ENSCMIG00000014469) #14	PDE3B (ENSCMIG00000014449) #17	CYP2R1 (ENSCMIG00000014438) #18	calca (ENSCMIG00000014433) #21	INSC (ENSCMIG00000014431) #22	ENSCMIG00000014426	SOX6 (ENSCMIG00000014156) #24	ENSCMIG00000014060 #26	PLEKHA7 (ENSCMIG00000014015) #27	ENSCMIG00000013988	rps13 (ENSCMIG00000013977) #29	PIK3C2A (ENSCMIG00000013542) #30	NUCB2 (ENSCMIG00000013293) #31	si:dkey-10o6.2 (ENSCMIG00000013256)	ENSCMIG00000013252	ENSCMIG00000013249	ENSCMIG00000013246	ENSCMIG00000013240	ENSCMIG00000013224	ENSCMIG00000013206