Mus	ANCESTRAL SPECIES	23	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00390000000360.r.b.a.b	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Shrew mouse	MODERN SPECIES	22	Slc6a15 (MGP_PahariEiJ_G0031309) #7	Tmtc2 (MGP_PahariEiJ_G0031308) #8	Mettl25 (MGP_PahariEiJ_G0031307) #9	Ccdc59 (MGP_PahariEiJ_G0031306) #10	Ppfia2 (MGP_PahariEiJ_G0031305) #11	Acss3 (MGP_PahariEiJ_G0031304) #12	Lin7a (MGP_PahariEiJ_G0031303) #13	Myf5 (MGP_PahariEiJ_G0031302) #14	Myf6 (MGP_PahariEiJ_G0031301) #15	Ptprq (MGP_PahariEiJ_G0031300) #16	MGP_PahariEiJ_G0031299 #17	Ppp1r12a (MGP_PahariEiJ_G0031298) #18	Pawr (MGP_PahariEiJ_G0031297) #19	Syt1 (MGP_PahariEiJ_G0031296) #20	MGP_PahariEiJ_G0031295 #21	E2f7 (MGP_PahariEiJ_G0031294) #22	Csrp2 (MGP_PahariEiJ_G0031293) #23	Zdhhc17 (MGP_PahariEiJ_G0031292) #24	Osbpl8 (MGP_PahariEiJ_G0031291) #25	Bbs10 (MGP_PahariEiJ_G0031290) #26	MGP_PahariEiJ_G0031289 #27	Phlda1 (MGP_PahariEiJ_G0031288) #28	Krr1 (MGP_PahariEiJ_G0031287) #29	Glipr1 (MGP_PahariEiJ_G0031286) #30	Glipr1l2 (MGP_PahariEiJ_G0031285) #31	MGP_PahariEiJ_G0031284 #32	Caps2 (MGP_PahariEiJ_G0031283) #33	Kcnc2 (MGP_PahariEiJ_G0031282) #34	Atxn7l3b (MGP_PahariEiJ_G0031281) #35	MGP_PahariEiJ_G0031280 #36	Trhde (MGP_PahariEiJ_G0031279) #37
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00390000000360.r.b.a.b	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00900000143684	ENSGT00940000155878 #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00390000000360.r.b.a.b	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162547.i.a #32	ENSGT00940000162357 #31	ENSGT00940000162547.i.b #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00900000143684
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162547.i.a #32	ENSGT00940000162357 #31	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00900000143684	ENSGT00940000155878 #37
Steppe mouse	MODERN SPECIES	2517																E2f7 (ENSMSIG00000004948) #22	Csrp2 (ENSMSIG00000004873) #23	Zdhhc17 (ENSMSIG00000004833) #24
spretus	MODERN SPECIES	1	Slc6a15 (MGP_SPRETEiJ_G0016600) #7	Tmtc2 (MGP_SPRETEiJ_G0016601) #8	Mettl25 (MGP_SPRETEiJ_G0016602) #9	Ccdc59 (MGP_SPRETEiJ_G0016603) #10	Ppfia2 (MGP_SPRETEiJ_G0016604) #11	Acss3 (MGP_SPRETEiJ_G0016605) #12	Lin7a (MGP_SPRETEiJ_G0016606) #13	Myf5 (MGP_SPRETEiJ_G0016607) #14	Myf6 (MGP_SPRETEiJ_G0016608) #15	Ptprq (MGP_SPRETEiJ_G0016609) #16	Otogl (MGP_SPRETEiJ_G0016610) #17	Ppp1r12a (MGP_SPRETEiJ_G0016611) #18	Pawr (MGP_SPRETEiJ_G0016612) #19	Syt1 (MGP_SPRETEiJ_G0016613) #20	Nav3 (MGP_SPRETEiJ_G0016614) #21	E2f7 (MGP_SPRETEiJ_G0016615) #22	Csrp2 (MGP_SPRETEiJ_G0016616) #23	Zdhhc17 (MGP_SPRETEiJ_G0016617) #24	Osbpl8 (MGP_SPRETEiJ_G0016618) #25	Bbs10 (MGP_SPRETEiJ_G0016619) #26	Nap1l1 (MGP_SPRETEiJ_G0016620) #27	Phlda1 (MGP_SPRETEiJ_G0016621) #28	Krr1 (MGP_SPRETEiJ_G0016622) #29	Glipr1 (MGP_SPRETEiJ_G0016623) #30	MGP_SPRETEiJ_G0016624 #32	MGP_SPRETEiJ_G0016625 #31	MGP_SPRETEiJ_G0016626 #33	Kcnc2 (MGP_SPRETEiJ_G0016627) #34	Atxn7l3b (MGP_SPRETEiJ_G0016628) #35	MGP_SPRETEiJ_G0016629	Trhde (MGP_SPRETEiJ_G0016630) #37
Mouse	MODERN SPECIES	1	Tmtc2 (ENSMUSG00000036019) #8	Mettl25 (ENSMUSG00000036009) #9	Ccdc59 (ENSMUSG00000019897) #10	Ppfia2 (ENSMUSG00000053825) #11	Acss3 (ENSMUSG00000035948) #12	Lin7a (ENSMUSG00000019906) #13	Myf5 (ENSMUSG00000000435) #14	Myf6 (ENSMUSG00000035923) #15	Ptprq (ENSMUSG00000035916) #16	Otogl (ENSMUSG00000091455) #17	Ppp1r12a (ENSMUSG00000019907) #18	Pawr (ENSMUSG00000035873) #19	Syt1 (ENSMUSG00000035864) #20	Brcc3dc (ENSMUSG00000112039)	Nav3 (ENSMUSG00000020181) #21	E2f7 (ENSMUSG00000020185) #22	Csrp2 (ENSMUSG00000020186) #23	Zdhhc17 (ENSMUSG00000035798) #24	Osbpl8 (ENSMUSG00000020189) #25	Bbs10 (ENSMUSG00000035759) #26	Nap1l1 (ENSMUSG00000058799) #27	Phlda1 (ENSMUSG00000020205) #28	Krr1 (ENSMUSG00000063334) #29	Glipr1 (ENSMUSG00000056888) #30	Glipr1l1 (ENSMUSG00000020213) #32	Glipr1l2 (ENSMUSG00000020214) #31	Glipr1l3 (ENSMUSG00000112611) #32	Caps2 (ENSMUSG00000035694) #33	Kcnc2 (ENSMUSG00000035681) #34	Atxn7l3b (ENSMUSG00000074748) #35	Trhde (ENSMUSG00000050663) #37
Ryukyu mouse	MODERN SPECIES	1	Slc6a15 (MGP_CAROLIEiJ_G0015778) #7	Tmtc2 (MGP_CAROLIEiJ_G0015779) #8	Mettl25 (MGP_CAROLIEiJ_G0015780) #9	Ccdc59 (MGP_CAROLIEiJ_G0015781) #10	Ppfia2 (MGP_CAROLIEiJ_G0015782) #11	Acss3 (MGP_CAROLIEiJ_G0015783) #12	Lin7a (MGP_CAROLIEiJ_G0015784) #13	Myf5 (MGP_CAROLIEiJ_G0015785) #14	Myf6 (MGP_CAROLIEiJ_G0015786) #15	Ptprq (MGP_CAROLIEiJ_G0015787) #16	Otogl (MGP_CAROLIEiJ_G0015788) #17	Ppp1r12a (MGP_CAROLIEiJ_G0015789) #18	MGP_CAROLIEiJ_G0015790 #19	Syt1 (MGP_CAROLIEiJ_G0015791) #20	Nav3 (MGP_CAROLIEiJ_G0015792) #21	E2f7 (MGP_CAROLIEiJ_G0015793) #22	Csrp2 (MGP_CAROLIEiJ_G0015794) #23	Zdhhc17 (MGP_CAROLIEiJ_G0015795) #24	Osbpl8 (MGP_CAROLIEiJ_G0015796) #25	Bbs10 (MGP_CAROLIEiJ_G0015797) #26	Nap1l1 (MGP_CAROLIEiJ_G0015798) #27	Phlda1 (MGP_CAROLIEiJ_G0015799) #28	Krr1 (MGP_CAROLIEiJ_G0015800) #29	Glipr1 (MGP_CAROLIEiJ_G0015801) #30	Glipr1l2 (MGP_CAROLIEiJ_G0015802) #31	MGP_CAROLIEiJ_G0015803 #32	Caps2 (MGP_CAROLIEiJ_G0015804) #33	Kcnc2 (MGP_CAROLIEiJ_G0015805) #34	Atxn7l3b (MGP_CAROLIEiJ_G0015806) #35	MGP_CAROLIEiJ_G0015807	Trhde (MGP_CAROLIEiJ_G0015808) #37