Vertebrata	ANCESTRAL SPECIES	583																ENSGT00940000157713 #22	ENSGT00940000154980 #23
Gnathostomata	ANCESTRAL SPECIES	159												ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853	ENSGT00940000171110	ENSGT00940000159670 #33
Euteleostomi	ANCESTRAL SPECIES	16	ENSGT00390000006546 #10	ENSGT00660000096975	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000166459.A	ENSGT00940000165853	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37
Sarcopterygii	ANCESTRAL SPECIES	8	ENSGT00390000006546 #10	ENSGT00660000096975	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000002417 #26	ENSGT00940000166459.A	ENSGT00940000165853	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Tetrapoda	ANCESTRAL SPECIES	5	ENSGT00390000006546 #10	ENSGT00660000096975	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000166459.A	ENSGT00940000165853	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Amniota	ANCESTRAL SPECIES	5	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000166459.A	ENSGT00940000165853	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37
Mammalia	ANCESTRAL SPECIES	8	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
Theria	ANCESTRAL SPECIES	2	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Glires	ANCESTRAL SPECIES	4	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Rodentia	ANCESTRAL SPECIES	5	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Muroidea	ANCESTRAL SPECIES	5	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00390000000360.r.b.a.b	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Murinae	ANCESTRAL SPECIES	22	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00390000000360.r.b.a.b	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Mus	ANCESTRAL SPECIES	23	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00390000000360.r.b.a.b	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Shrew mouse	MODERN SPECIES	22	Slc6a15 (MGP_PahariEiJ_G0031309) #7	Tmtc2 (MGP_PahariEiJ_G0031308) #8	Mettl25 (MGP_PahariEiJ_G0031307) #9	Ccdc59 (MGP_PahariEiJ_G0031306) #10	Ppfia2 (MGP_PahariEiJ_G0031305) #11	Acss3 (MGP_PahariEiJ_G0031304) #12	Lin7a (MGP_PahariEiJ_G0031303) #13	Myf5 (MGP_PahariEiJ_G0031302) #14	Myf6 (MGP_PahariEiJ_G0031301) #15	Ptprq (MGP_PahariEiJ_G0031300) #16	MGP_PahariEiJ_G0031299 #17	Ppp1r12a (MGP_PahariEiJ_G0031298) #18	Pawr (MGP_PahariEiJ_G0031297) #19	Syt1 (MGP_PahariEiJ_G0031296) #20	MGP_PahariEiJ_G0031295 #21	E2f7 (MGP_PahariEiJ_G0031294) #22	Csrp2 (MGP_PahariEiJ_G0031293) #23	Zdhhc17 (MGP_PahariEiJ_G0031292) #24	Osbpl8 (MGP_PahariEiJ_G0031291) #25	Bbs10 (MGP_PahariEiJ_G0031290) #26	MGP_PahariEiJ_G0031289 #27	Phlda1 (MGP_PahariEiJ_G0031288) #28	Krr1 (MGP_PahariEiJ_G0031287) #29	Glipr1 (MGP_PahariEiJ_G0031286) #30	Glipr1l2 (MGP_PahariEiJ_G0031285) #31	MGP_PahariEiJ_G0031284 #32	Caps2 (MGP_PahariEiJ_G0031283) #33	Kcnc2 (MGP_PahariEiJ_G0031282) #34	Atxn7l3b (MGP_PahariEiJ_G0031281) #35	MGP_PahariEiJ_G0031280 #36	Trhde (MGP_PahariEiJ_G0031279) #37
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00390000000360.r.b.a.b	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00900000143684	ENSGT00940000155878 #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00390000000360.r.b.a.b	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162547.i.a #32	ENSGT00940000162357 #31	ENSGT00940000162547.i.b #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00900000143684
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162547.i.a #32	ENSGT00940000162357 #31	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00900000143684	ENSGT00940000155878 #37
Steppe mouse	MODERN SPECIES	2517																E2f7 (ENSMSIG00000004948) #22	Csrp2 (ENSMSIG00000004873) #23	Zdhhc17 (ENSMSIG00000004833) #24
spretus	MODERN SPECIES	1	Slc6a15 (MGP_SPRETEiJ_G0016600) #7	Tmtc2 (MGP_SPRETEiJ_G0016601) #8	Mettl25 (MGP_SPRETEiJ_G0016602) #9	Ccdc59 (MGP_SPRETEiJ_G0016603) #10	Ppfia2 (MGP_SPRETEiJ_G0016604) #11	Acss3 (MGP_SPRETEiJ_G0016605) #12	Lin7a (MGP_SPRETEiJ_G0016606) #13	Myf5 (MGP_SPRETEiJ_G0016607) #14	Myf6 (MGP_SPRETEiJ_G0016608) #15	Ptprq (MGP_SPRETEiJ_G0016609) #16	Otogl (MGP_SPRETEiJ_G0016610) #17	Ppp1r12a (MGP_SPRETEiJ_G0016611) #18	Pawr (MGP_SPRETEiJ_G0016612) #19	Syt1 (MGP_SPRETEiJ_G0016613) #20	Nav3 (MGP_SPRETEiJ_G0016614) #21	E2f7 (MGP_SPRETEiJ_G0016615) #22	Csrp2 (MGP_SPRETEiJ_G0016616) #23	Zdhhc17 (MGP_SPRETEiJ_G0016617) #24	Osbpl8 (MGP_SPRETEiJ_G0016618) #25	Bbs10 (MGP_SPRETEiJ_G0016619) #26	Nap1l1 (MGP_SPRETEiJ_G0016620) #27	Phlda1 (MGP_SPRETEiJ_G0016621) #28	Krr1 (MGP_SPRETEiJ_G0016622) #29	Glipr1 (MGP_SPRETEiJ_G0016623) #30	MGP_SPRETEiJ_G0016624 #32	MGP_SPRETEiJ_G0016625 #31	MGP_SPRETEiJ_G0016626 #33	Kcnc2 (MGP_SPRETEiJ_G0016627) #34	Atxn7l3b (MGP_SPRETEiJ_G0016628) #35	MGP_SPRETEiJ_G0016629	Trhde (MGP_SPRETEiJ_G0016630) #37
Mouse	MODERN SPECIES	1	Tmtc2 (ENSMUSG00000036019) #8	Mettl25 (ENSMUSG00000036009) #9	Ccdc59 (ENSMUSG00000019897) #10	Ppfia2 (ENSMUSG00000053825) #11	Acss3 (ENSMUSG00000035948) #12	Lin7a (ENSMUSG00000019906) #13	Myf5 (ENSMUSG00000000435) #14	Myf6 (ENSMUSG00000035923) #15	Ptprq (ENSMUSG00000035916) #16	Otogl (ENSMUSG00000091455) #17	Ppp1r12a (ENSMUSG00000019907) #18	Pawr (ENSMUSG00000035873) #19	Syt1 (ENSMUSG00000035864) #20	Brcc3dc (ENSMUSG00000112039)	Nav3 (ENSMUSG00000020181) #21	E2f7 (ENSMUSG00000020185) #22	Csrp2 (ENSMUSG00000020186) #23	Zdhhc17 (ENSMUSG00000035798) #24	Osbpl8 (ENSMUSG00000020189) #25	Bbs10 (ENSMUSG00000035759) #26	Nap1l1 (ENSMUSG00000058799) #27	Phlda1 (ENSMUSG00000020205) #28	Krr1 (ENSMUSG00000063334) #29	Glipr1 (ENSMUSG00000056888) #30	Glipr1l1 (ENSMUSG00000020213) #32	Glipr1l2 (ENSMUSG00000020214) #31	Glipr1l3 (ENSMUSG00000112611) #32	Caps2 (ENSMUSG00000035694) #33	Kcnc2 (ENSMUSG00000035681) #34	Atxn7l3b (ENSMUSG00000074748) #35	Trhde (ENSMUSG00000050663) #37
Ryukyu mouse	MODERN SPECIES	1	Slc6a15 (MGP_CAROLIEiJ_G0015778) #7	Tmtc2 (MGP_CAROLIEiJ_G0015779) #8	Mettl25 (MGP_CAROLIEiJ_G0015780) #9	Ccdc59 (MGP_CAROLIEiJ_G0015781) #10	Ppfia2 (MGP_CAROLIEiJ_G0015782) #11	Acss3 (MGP_CAROLIEiJ_G0015783) #12	Lin7a (MGP_CAROLIEiJ_G0015784) #13	Myf5 (MGP_CAROLIEiJ_G0015785) #14	Myf6 (MGP_CAROLIEiJ_G0015786) #15	Ptprq (MGP_CAROLIEiJ_G0015787) #16	Otogl (MGP_CAROLIEiJ_G0015788) #17	Ppp1r12a (MGP_CAROLIEiJ_G0015789) #18	MGP_CAROLIEiJ_G0015790 #19	Syt1 (MGP_CAROLIEiJ_G0015791) #20	Nav3 (MGP_CAROLIEiJ_G0015792) #21	E2f7 (MGP_CAROLIEiJ_G0015793) #22	Csrp2 (MGP_CAROLIEiJ_G0015794) #23	Zdhhc17 (MGP_CAROLIEiJ_G0015795) #24	Osbpl8 (MGP_CAROLIEiJ_G0015796) #25	Bbs10 (MGP_CAROLIEiJ_G0015797) #26	Nap1l1 (MGP_CAROLIEiJ_G0015798) #27	Phlda1 (MGP_CAROLIEiJ_G0015799) #28	Krr1 (MGP_CAROLIEiJ_G0015800) #29	Glipr1 (MGP_CAROLIEiJ_G0015801) #30	Glipr1l2 (MGP_CAROLIEiJ_G0015802) #31	MGP_CAROLIEiJ_G0015803 #32	Caps2 (MGP_CAROLIEiJ_G0015804) #33	Kcnc2 (MGP_CAROLIEiJ_G0015805) #34	Atxn7l3b (MGP_CAROLIEiJ_G0015806) #35	MGP_CAROLIEiJ_G0015807	Trhde (MGP_CAROLIEiJ_G0015808) #37
Rat	MODERN SPECIES	17	Mettl25 (ENSRNOG00000027451) #9	Ccdc59 (ENSRNOG00000004183) #10	ENSRNOG00000063471	Ppfia2 (ENSRNOG00000004353) #11	Acss3 (ENSRNOG00000004448) #12	Lin7a (ENSRNOG00000004527) #13	Myf5 (ENSRNOG00000004768) #14	Myf6 (ENSRNOG00000004878) #15	Ptprq (ENSRNOG00000056915) #16	Otogl (ENSRNOG00000030316) #17	Ppp1r12a (ENSRNOG00000004925) #18	Pawr (ENSRNOG00000005917) #19	Syt1 (ENSRNOG00000006426) #20	Brcc3dc (ENSRNOG00000070196)	Nav3 (ENSRNOG00000052157) #21	E2f7 (ENSRNOG00000026252) #22	Csrp2 (ENSRNOG00000003772) #23	Zdhhc17 (ENSRNOG00000003803) #24	Osbpl8 (ENSRNOG00000026962) #25	ENSRNOG00000062798	Bbs10 (ENSRNOG00000026913) #26	Nap1l1 (ENSRNOG00000003890) #27	Phlda1 (ENSRNOG00000004019) #28	Krr1 (ENSRNOG00000004035) #29	Glipr1 (ENSRNOG00000026644) #30	Glipr1l2 (ENSRNOG00000049053) #31	Glipr1l1 (ENSRNOG00000026634) #32	Caps2 (ENSRNOG00000026600) #33	Kcnc2 (ENSRNOG00000004077) #34	Atxn7l3b (ENSRNOG00000059744) #35	Trhde (ENSRNOG00000005278) #37
Cricetidae	ANCESTRAL SPECIES	21	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00390000000360.r.b.a.b	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Cricetinae	ANCESTRAL SPECIES	22	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00390000000360.r.b.a.b	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000167051	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Chinese hamster chok1gshd	MODERN SPECIES	83	Ppfia2 (ENSCGRG00001020914) #11	Acss3 (ENSCGRG00001009906) #12	Lin7a (ENSCGRG00001003313) #13	Myf5 (ENSCGRG00001009370) #14	Myf6 (ENSCGRG00001006341) #15	Ptprq (ENSCGRG00001017128) #16	Otogl (ENSCGRG00001018530) #17	Ppp1r12a (ENSCGRG00001017263) #18	Pawr (ENSCGRG00001011044) #19	ENSCGRG00001009057	ENSCGRG00001010398	Syt1 (ENSCGRG00001000069) #20	Brcc3dc (ENSCGRG00001009076)	Nav3 (ENSCGRG00001022037) #21	ENSCGRG00001011762	E2f7 (ENSCGRG00001006568) #22	Csrp2 (ENSCGRG00001000844) #23	Zdhhc17 (ENSCGRG00001007660) #24	Osbpl8 (ENSCGRG00001021286) #25	Bbs10 (ENSCGRG00001010466) #26	ENSCGRG00001019257 #27	Phlda1 (ENSCGRG00001012896) #28	ENSCGRG00001005440	Krr1 (ENSCGRG00001005995) #29	Glipr1 (ENSCGRG00001017559) #30	ENSCGRG00001014628 #32	Caps2 (ENSCGRG00001012612) #33	Kcnc2 (ENSCGRG00001023381) #34	Atxn7l3b (ENSCGRG00001001803) #35	Trhde (ENSCGRG00001020946) #37	Tph2 (ENSCGRG00001012899)
Golden Hamster	MODERN SPECIES	628	Mettl25 (ENSMAUG00000020950) #9	Ccdc59 (ENSMAUG00000017516) #10	Ppfia2 (ENSMAUG00000021622) #11	ENSMAUG00000019031	Acss3 (ENSMAUG00000014131) #12	Lin7a (ENSMAUG00000007088) #13	Myf5 (ENSMAUG00000000933) #14	Myf6 (ENSMAUG00000019329) #15	Ptprq (ENSMAUG00000014282) #16	Otogl (ENSMAUG00000009930) #17	Ppp1r12a (ENSMAUG00000021712) #18	ENSMAUG00000008984	Syt1 (ENSMAUG00000012263) #20	ENSMAUG00000014224	Nav3 (ENSMAUG00000012505) #21	E2f7 (ENSMAUG00000010792) #22	Csrp2 (ENSMAUG00000018727) #23	Zdhhc17 (ENSMAUG00000021687) #24	Osbpl8 (ENSMAUG00000022092) #25	Bbs10 (ENSMAUG00000018240) #26	Nap1l1 (ENSMAUG00000016700) #27	ENSMAUG00000021584	Krr1 (ENSMAUG00000021283) #29	Glipr1l2 (ENSMAUG00000017252) #31	ENSMAUG00000022161 #32	Caps2 (ENSMAUG00000009850) #33	Kcnc2 (ENSMAUG00000010585) #34
Cricetidae_B	ANCESTRAL SPECIES	29	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00390000000360.r.b.a.b	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Prairie vole	MODERN SPECIES	10	Tmtc2 (ENSMOCG00000012479) #8	Mettl25 (ENSMOCG00000018000) #9	Ccdc59 (ENSMOCG00000006690) #10	Ppfia2 (ENSMOCG00000007873) #11	Acss3 (ENSMOCG00000012086) #12	Lin7a (ENSMOCG00000021369) #13	Myf5 (ENSMOCG00000017847) #14	Myf6 (ENSMOCG00000015833) #15	Ptprq (ENSMOCG00000017842) #16	Otogl (ENSMOCG00000018409) #17	Ppp1r12a (ENSMOCG00000018418) #18	Pawr (ENSMOCG00000019570) #19	Syt1 (ENSMOCG00000012503) #20	ENSMOCG00000020523	Nav3 (ENSMOCG00000018391) #21	E2f7 (ENSMOCG00000021130) #22	Csrp2 (ENSMOCG00000007217) #23	Zdhhc17 (ENSMOCG00000002407) #24	Osbpl8 (ENSMOCG00000016633) #25	Bbs10 (ENSMOCG00000020010) #26	Nap1l1 (ENSMOCG00000012136) #27	Phlda1 (ENSMOCG00000021889) #28	Krr1 (ENSMOCG00000018635) #29	Glipr1 (ENSMOCG00000022141) #30	Glipr1l2 (ENSMOCG00000002411) #31	ENSMOCG00000013587 #32	Caps2 (ENSMOCG00000001012) #33	Kcnc2 (ENSMOCG00000022707) #34	Atxn7l3b (ENSMOCG00000007338) #35	ENSMOCG00000016064	Trhde (ENSMOCG00000000440) #37
Northern American deer mouse	MODERN SPECIES	9	Tmtc2 (ENSPEMG00000020725) #8	Mettl25 (ENSPEMG00000013112) #9	Ccdc59 (ENSPEMG00000031144) #10	Ppfia2 (ENSPEMG00000015993) #11	Acss3 (ENSPEMG00000017696) #12	Lin7a (ENSPEMG00000018576) #13	Myf5 (ENSPEMG00000018818) #14	Myf6 (ENSPEMG00000019751) #15	Ptprq (ENSPEMG00000019976) #16	Otogl (ENSPEMG00000005921) #17	Ppp1r12a (ENSPEMG00000011824) #18	Pawr (ENSPEMG00000031267) #19	Syt1 (ENSPEMG00000011853) #20	Brcc3dc (ENSPEMG00000012864)	Nav3 (ENSPEMG00000003783) #21	E2f7 (ENSPEMG00000013555) #22	Csrp2 (ENSPEMG00000012653) #23	Zdhhc17 (ENSPEMG00000011257) #24	Osbpl8 (ENSPEMG00000008934) #25	Bbs10 (ENSPEMG00000031116) #26	Nap1l1 (ENSPEMG00000000646) #27	Phlda1 (ENSPEMG00000020277) #28	Krr1 (ENSPEMG00000020228) #29	Glipr1 (ENSPEMG00000020190) #30	ENSPEMG00000020146 #31	ENSPEMG00000020129 #32	ENSPEMG00000030311 #32	Caps2 (ENSPEMG00000020036) #33	Kcnc2 (ENSPEMG00000014606) #34	Atxn7l3b (ENSPEMG00000027167) #35	Trhde (ENSPEMG00000022340) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	494	Ccdc59 (ENSNGAG00000023637) #10	ENSNGAG00000012599	Ppfia2 (ENSNGAG00000022807) #11	Acss3 (ENSNGAG00000015078) #12	Lin7a (ENSNGAG00000022827) #13	Myf5 (ENSNGAG00000003539) #14	Myf6 (ENSNGAG00000023390) #15	Ptprq (ENSNGAG00000024172) #16	Otogl (ENSNGAG00000022483) #17	ENSNGAG00000024231	Ppp1r12a (ENSNGAG00000023300) #18	Pawr (ENSNGAG00000015922) #19	Syt1 (ENSNGAG00000020988) #20	Nav3 (ENSNGAG00000024210) #21	ENSNGAG00000024182	E2f7 (ENSNGAG00000023644) #22	ENSNGAG00000023257 #23	Zdhhc17 (ENSNGAG00000009049) #24	Osbpl8 (ENSNGAG00000014231) #25	Bbs10 (ENSNGAG00000022298) #26	ENSNGAG00000014133	ENSNGAG00000022884
Lesser Egyptian jerboa	MODERN SPECIES	42	Ccdc59 (ENSJJAG00000015263) #10	ENSJJAG00000003779	Ppfia2 (ENSJJAG00000006298) #11	Acss3 (ENSJJAG00000008308) #12	Lin7a (ENSJJAG00000023503) #13	Myf5 (ENSJJAG00000003407) #14	Myf6 (ENSJJAG00000011250) #15	Ptprq (ENSJJAG00000017741) #16	Otogl (ENSJJAG00000019493) #17	Ppp1r12a (ENSJJAG00000023796) #18	Pawr (ENSJJAG00000018666) #19	Syt1 (ENSJJAG00000023399) #20	ENSJJAG00000022372	Nav3 (ENSJJAG00000012332) #21	ENSJJAG00000010552	E2f7 (ENSJJAG00000007878) #22	ENSJJAG00000005723	ENSJJAG00000014135 #23	ENSJJAG00000011419 #24	Osbpl8 (ENSJJAG00000024252) #25	Bbs10 (ENSJJAG00000023405) #26	ENSJJAG00000024142	Nap1l1 (ENSJJAG00000023205) #27	Phlda1 (ENSJJAG00000023924) #28	ENSJJAG00000023900 #29	ENSJJAG00000013157 #31	ENSJJAG00000023384 #30	ENSJJAG00000022416 #32	ENSJJAG00000009366 #33	Atxn7l3b (ENSJJAG00000002351) #35	ENSJJAG00000016750
Kangaroo rat	MODERN SPECIES	322	ENSDORG00000008703	Slc6a15 (ENSDORG00000000388) #7	Tmtc2 (ENSDORG00000005875) #8	Mettl25 (ENSDORG00000003006) #9	Ppfia2 (ENSDORG00000007289) #11	Acss3 (ENSDORG00000007288) #12	Lin7a (ENSDORG00000014355) #13	Myf5 (ENSDORG00000015437) #14	Myf6 (ENSDORG00000015435) #15	Ptprq (ENSDORG00000023208) #16	Otogl (ENSDORG00000028677) #17	Ppp1r12a (ENSDORG00000007157) #18	Pawr (ENSDORG00000029489) #19	Syt1 (ENSDORG00000003724) #20	Nav3 (ENSDORG00000011080) #21	ENSDORG00000026154 #22	Csrp2 (ENSDORG00000012441) #23	Zdhhc17 (ENSDORG00000012435) #24	Osbpl8 (ENSDORG00000000670) #25	Bbs10 (ENSDORG00000000668) #26	Nap1l1 (ENSDORG00000029138) #27	Phlda1 (ENSDORG00000027757) #28	ENSDORG00000023399	ENSDORG00000004614 #29	Glipr1 (ENSDORG00000004613) #30	ENSDORG00000027121 #31	Kcnc2 (ENSDORG00000000056) #34	Atxn7l3b (ENSDORG00000025438) #35	ENSDORG00000013399 #37	ENSDORG00000028797 #37	Tph2 (ENSDORG00000000779)
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00940000153362.a.hb.b #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.hb.b.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000036317	PPFIA2 (ENSHGLG00000000429) #11	ACSS3 (ENSHGLG00000004579) #12	ENSHGLG00000003757 #13	MYF5 (ENSHGLG00000003654) #14	MYF6 (ENSHGLG00000003419) #15	PTPRQ (ENSHGLG00000011762) #16	OTOGL (ENSHGLG00000013295) #17	PPP1R12A (ENSHGLG00000014201) #18	ENSHGLG00000036431	PAWR (ENSHGLG00000017940) #19	SYT1 (ENSHGLG00000047548) #20	ENSHGLG00000042592	ENSHGLG00000010015	NAV3 (ENSHGLG00000012083) #21	E2F7 (ENSHGLG00000006491) #22	ENSHGLG00000008206 #23	ENSHGLG00000009233 #24	ENSHGLG00000004489	ENSHGLG00000044176	ENSHGLG00000008641	ENSHGLG00000033319	ENSHGLG00000039577	ENSHGLG00000008111 #25	BBS10 (ENSHGLG00000041362) #26	ENSHGLG00000046259	ENSHGLG00000014189 #27	ENSHGLG00000045931	KRR1 (ENSHGLG00000004459) #29	GLIPR1 (ENSHGLG00000037317) #30	ENSHGLG00000037384
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.hb.b.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Guinea pig	MODERN SPECIES	9	SLC6A15 (ENSCPOG00000003103) #7	TMTC2 (ENSCPOG00000005425) #8	METTL25 (ENSCPOG00000011621) #9	CCDC59 (ENSCPOG00000036718) #10	PPFIA2 (ENSCPOG00000003459) #11	ACSS3 (ENSCPOG00000003451) #12	LIN7A (ENSCPOG00000001373) #13	MYF5 (ENSCPOG00000007766) #14	MYF6 (ENSCPOG00000030745) #15	PTPRQ (ENSCPOG00000031105) #16	OTOGL (ENSCPOG00000022231) #17	PPP1R12A (ENSCPOG00000004019) #18	PAWR (ENSCPOG00000002469) #19	SYT1 (ENSCPOG00000002054) #20	NAV3 (ENSCPOG00000015431) #21	E2F7 (ENSCPOG00000007375) #22	CSRP2 (ENSCPOG00000031460) #23	ZDHHC17 (ENSCPOG00000012534) #24	OSBPL8 (ENSCPOG00000001130) #25	BBS10 (ENSCPOG00000038158) #26	NAP1L1 (ENSCPOG00000019420) #27	PHLDA1 (ENSCPOG00000003245) #28	KRR1 (ENSCPOG00000014353) #29	GLIPR1 (ENSCPOG00000014351) #30	ENSCPOG00000013925 #31	ENSCPOG00000011301	GLIPR1L1 (ENSCPOG00000011726) #32	CAPS2 (ENSCPOG00000011709) #33	KCNC2 (ENSCPOG00000003474) #34	ATXN7L3B (ENSCPOG00000040398) #35	TRHDE (ENSCPOG00000007500) #37
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.hb.b.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Long-tailed chinchilla	MODERN SPECIES	112	TMTC2 (ENSCLAG00000008519) #8	METTL25 (ENSCLAG00000014989) #9	CCDC59 (ENSCLAG00000015050) #10	PPFIA2 (ENSCLAG00000008120) #11	ACSS3 (ENSCLAG00000005808) #12	ENSCLAG00000013764 #13	MYF5 (ENSCLAG00000014410) #14	MYF6 (ENSCLAG00000013875) #15	PTPRQ (ENSCLAG00000012232) #16	OTOGL (ENSCLAG00000006526) #17	PPP1R12A (ENSCLAG00000006399) #18	PAWR (ENSCLAG00000008196) #19	SYT1 (ENSCLAG00000004862) #20	ENSCLAG00000005685	NAV3 (ENSCLAG00000012036) #21	E2F7 (ENSCLAG00000007164) #22	CSRP2 (ENSCLAG00000008899) #23	ZDHHC17 (ENSCLAG00000011124) #24	ENSCLAG00000017859	OSBPL8 (ENSCLAG00000010204) #25	BBS10 (ENSCLAG00000007902) #26	ENSCLAG00000005333 #27	PHLDA1 (ENSCLAG00000006934) #28	KRR1 (ENSCLAG00000005111) #29	GLIPR1 (ENSCLAG00000006364) #30	GLIPR1L2 (ENSCLAG00000006004) #31	GLIPR1L1 (ENSCLAG00000005153) #32	ENSCLAG00000004453 #33	KCNC2 (ENSCLAG00000009275) #34	ATXN7L3B (ENSCLAG00000017725) #35	TRHDE (ENSCLAG00000005841) #37
Degu	MODERN SPECIES	45	PPFIA2 (ENSODEG00000007419) #11	ACSS3 (ENSODEG00000007503) #12	ENSODEG00000019454	LIN7A (ENSODEG00000007832) #13	MYF5 (ENSODEG00000007510) #14	MYF6 (ENSODEG00000007305) #15	PTPRQ (ENSODEG00000007761) #16	OTOGL (ENSODEG00000007895) #17	PPP1R12A (ENSODEG00000009363) #18	ENSODEG00000019636	PAWR (ENSODEG00000008160) #19	ENSODEG00000007440	SYT1 (ENSODEG00000008387) #20	ENSODEG00000007970	NAV3 (ENSODEG00000010398) #21	ENSODEG00000008575 #22	CSRP2 (ENSODEG00000008449) #23	ZDHHC17 (ENSODEG00000010670) #24	ENSODEG00000007367	OSBPL8 (ENSODEG00000007618) #25	BBS10 (ENSODEG00000007380) #26	ENSODEG00000007344 #27	PHLDA1 (ENSODEG00000019456) #28	ENSODEG00000006609	ENSODEG00000019616	ENSODEG00000007152 #29	GLIPR1 (ENSODEG00000008406) #30	ENSODEG00000019533	TMTC1 (ENSODEG00000007589)	ENSODEG00000006579	ERGIC2 (ENSODEG00000007081)
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00940000153362.a.hb.b #27	ENSGT00440000039564.b #28	ENSGT00390000018775.ab #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Marmotini	ANCESTRAL SPECIES	4	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.hb.b #27	ENSGT00440000039564.b #28	ENSGT00390000018775.ab #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.hb.b #27	ENSGT00440000039564.b #28	ENSGT00390000018775.ab #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00390000001376	ENSGT00390000008294.e.b.a.b	ENSGT00940000157371 #34	ENSGT00940000162576 #35
Arctic ground squirrel	MODERN SPECIES	177											OTOGL (ENSUPAG00010005372) #17	PPP1R12A (ENSUPAG00010005325) #18	PAWR (ENSUPAG00010005305) #19	SYT1 (ENSUPAG00010005294) #20	NAV3 (ENSUPAG00010005261) #21	E2F7 (ENSUPAG00010005233) #22	CSRP2 (ENSUPAG00010005224) #23	ZDHHC17 (ENSUPAG00010005181) #24	OSBPL8 (ENSUPAG00010005095) #25	BBS10 (ENSUPAG00010005089) #26	ENSUPAG00010004967	ENSUPAG00010004960 #28
Squirrel	MODERN SPECIES	168															NAV3 (ENSSTOG00000012725) #21	E2F7 (ENSSTOG00000007887) #22	CSRP2 (ENSSTOG00000010876) #23	ZDHHC17 (ENSSTOG00000010869) #24	OSBPL8 (ENSSTOG00000011866) #25	BBS10 (ENSSTOG00000011855) #26	NAP1L1 (ENSSTOG00000003046) #27	PHLDA1 (ENSSTOG00000020332) #28	KRR1 (ENSSTOG00000003620) #29	GLIPR1 (ENSSTOG00000003613) #30	ENSSTOG00000024468 #31	GLIPR1L1 (ENSSTOG00000020403) #32	ENSSTOG00000003438 #33	ENSSTOG00000028374	KCNC2 (ENSSTOG00000004842) #34	ATXN7L3B (ENSSTOG00000023624) #35	TRHDE (ENSSTOG00000003761) #37
Alpin marmot	MODERN SPECIES	11	SLC6A15 (ENSMMMG00000001050) #7	ENSMMMG00000001090	TMTC2 (ENSMMMG00000001120) #8	METTL25 (ENSMMMG00000001158) #9	CCDC59 (ENSMMMG00000001213) #10	PPFIA2 (ENSMMMG00000001244) #11	ACSS3 (ENSMMMG00000001391) #12	LIN7A (ENSMMMG00000001429) #13	MYF5 (ENSMMMG00000001446) #14	MYF6 (ENSMMMG00000001463) #15	PTPRQ (ENSMMMG00000001485) #16	OTOGL (ENSMMMG00000001599) #17	PPP1R12A (ENSMMMG00000001751) #18	SYT1 (ENSMMMG00000001991) #20	NAV3 (ENSMMMG00000002035) #21	E2F7 (ENSMMMG00000002119) #22	ENSMMMG00000002164 #23	ZDHHC17 (ENSMMMG00000002185) #24	OSBPL8 (ENSMMMG00000002240) #25	BBS10 (ENSMMMG00000002273) #26	ENSMMMG00000002289 #27	PHLDA1 (ENSMMMG00000002474) #28	KRR1 (ENSMMMG00000002493) #29	GLIPR1 (ENSMMMG00000002546) #30	GLIPR1L2 (ENSMMMG00000002582) #31	GLIPR1L1 (ENSMMMG00000002592) #32	CAPS2 (ENSMMMG00000002609) #33	ENSMMMG00000002677	KCNC2 (ENSMMMG00000002683) #34	ENSMMMG00000002698	ATXN7L3B (ENSMMMG00000002707) #35
Eurasian red squirrel	MODERN SPECIES	14	METTL25 (ENSSVLG00005002343) #9	CCDC59 (ENSSVLG00005002316) #10	PPFIA2 (ENSSVLG00005001201) #11	ACSS3 (ENSSVLG00005000239) #12	BLVRB (ENSSVLG00005025266)	LIN7A (ENSSVLG00005025250) #13	MYF5 (ENSSVLG00005025239) #14	MYF6 (ENSSVLG00005025222) #15	PTPRQ (ENSSVLG00005025041) #16	OTOGL (ENSSVLG00005024601) #17	PPP1R12A (ENSSVLG00005024407) #18	PAWR (ENSSVLG00005024360) #19	SYT1 (ENSSVLG00005024299) #20	NAV3 (ENSSVLG00005023837) #21	ENSSVLG00005023728	E2F7 (ENSSVLG00005023615) #22	ENSSVLG00005023521 #23	ZDHHC17 (ENSSVLG00005023480) #24	OSBPL8 (ENSSVLG00005023307) #25	ENSSVLG00005023266	BBS10 (ENSSVLG00005023257) #26	NAP1L1 (ENSSVLG00005023160) #27	ENSSVLG00005023108	KRR1 (ENSSVLG00005023069) #29	GLIPR1 (ENSSVLG00005023023) #30	ENSSVLG00005023001	GLIPR1L2 (ENSSVLG00005022916) #31	GLIPR1L1 (ENSSVLG00005022861) #32	CAPS2 (ENSSVLG00005022512) #33	KCNC2 (ENSSVLG00005022353) #34	ATXN7L3B (ENSSVLG00005022316) #35
Lagomorpha	ANCESTRAL SPECIES	113	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547.f.b #32	ENSGT00940000162547.f.a #32	ENSGT00940000162547.e #32
Rabbit	MODERN SPECIES	15	ENSOCUG00000036764	PPFIA2 (ENSOCUG00000015770) #11	ACSS3 (ENSOCUG00000015752) #12	LIN7A (ENSOCUG00000004203) #13	MYF5 (ENSOCUG00000025477) #14	MYF6 (ENSOCUG00000001457) #15	PTPRQ (ENSOCUG00000011455) #16	OTOGL (ENSOCUG00000014963) #17	ENSOCUG00000037584	PPP1R12A (ENSOCUG00000016701) #18	PAWR (ENSOCUG00000013722) #19	SYT1 (ENSOCUG00000014829) #20	ENSOCUG00000005148	NAV3 (ENSOCUG00000004936) #21	ENSOCUG00000025947	E2F7 (ENSOCUG00000004932) #22	ENSOCUG00000008330 #23	ENSOCUG00000027238	ZDHHC17 (ENSOCUG00000010401) #24	ENSOCUG00000028124	ENSOCUG00000032449	OSBPL8 (ENSOCUG00000010527) #25	BBS10 (ENSOCUG00000010522) #26	NAP1L1 (ENSOCUG00000013857) #27	PHLDA1 (ENSOCUG00000022950) #28	KRR1 (ENSOCUG00000003925) #29	GLIPR1 (ENSOCUG00000003921) #30	ENSOCUG00000031904 #32	ENSOCUG00000031541 #32	GLIPR1L2 (ENSOCUG00000003916) #31	ENSOCUG00000003909 #32
Pika	MODERN SPECIES	6842																E2F7 (ENSOPRG00000001896) #22
Tree shrew	MODERN SPECIES	3364																E2F7 (ENSTBEG00000005417) #22
Primates	ANCESTRAL SPECIES	6	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546.c #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00880000138028.b.b.b	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024
Hominidae	ANCESTRAL SPECIES	4	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546.c #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00880000138028.b.b.b	ENSGT00940000153362.a #27	ENSGT00910000147072	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546.c #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00880000138028.b.b.b	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Gorilla	MODERN SPECIES	3	CCDC59 (ENSGGOG00000025296) #10	PPFIA2 (ENSGGOG00000026460) #11	ACSS3 (ENSGGOG00000010105) #12	LIN7A (ENSGGOG00000038053) #13	MYF5 (ENSGGOG00000004366) #14	MYF6 (ENSGGOG00000004369) #15	PTPRQ (ENSGGOG00000011494) #16	ENSGGOG00000015088 #17	ENSGGOG00000025286	PPP1R12A (ENSGGOG00000014574) #18	PAWR (ENSGGOG00000010093) #19	ENSGGOG00000022534	SYT1 (ENSGGOG00000024224) #20	ENSGGOG00000002908	NAV3 (ENSGGOG00000006574) #21	E2F7 (ENSGGOG00000012645) #22	ENSGGOG00000038839	ENSGGOG00000041578 #23	ENSGGOG00000039704 #23	ZDHHC17 (ENSGGOG00000023287) #24	ENSGGOG00000023867	OSBPL8 (ENSGGOG00000016140) #25	BBS10 (ENSGGOG00000023091) #26	ENSGGOG00000041304	NAP1L1 (ENSGGOG00000003883) #27	KRR1 (ENSGGOG00000013596) #29	GLIPR1 (ENSGGOG00000013591) #30	GLIPR1L2 (ENSGGOG00000024647) #31	GLIPR1L1 (ENSGGOG00000001021) #32	CAPS2 (ENSGGOG00000013620) #33	KCNC2 (ENSGGOG00000003896) #34
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546.c #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00880000138028.b.b.b	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Pan	ANCESTRAL SPECIES	4	ENSGT00530000063745.b #9	ENSGT00390000006546.c #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000155142.i.a.a	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154389.b.e	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00950000182922.a.a.a.b.a.b.a.b.b.a	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00880000138028.b.b.b	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34
Chimpanzee	MODERN SPECIES	3	PPFIA2 (ENSPTRG00000005265) #11	ACSS3 (ENSPTRG00000005263) #12	LIN7A (ENSPTRG00000005262) #13	MYF5 (ENSPTRG00000005261) #14	MYF6 (ENSPTRG00000005260) #15	PTPRQ (ENSPTRG00000039205) #16	OTOGL (ENSPTRG00000005257) #17	ENSPTRG00000045837	PPP1R12A (ENSPTRG00000005252) #18	PAWR (ENSPTRG00000005250) #19	SYT1 (ENSPTRG00000024064) #20	ENSPTRG00000050322	ENSPTRG00000044151	ENSPTRG00000046920	NAV3 (ENSPTRG00000005247) #21	E2F7 (ENSPTRG00000005245) #22	ENSPTRG00000051009	CSRP2 (ENSPTRG00000005244) #23	ZDHHC17 (ENSPTRG00000005243) #24	ENSPTRG00000048649	ENSPTRG00000045883	OSBPL8 (ENSPTRG00000005242) #25	BBS10 (ENSPTRG00000005241) #26	ENSPTRG00000043245	NAP1L1 (ENSPTRG00000005240) #27	PHLDA1 (ENSPTRG00000043613) #28	KRR1 (ENSPTRG00000005238) #29	GLIPR1 (ENSPTRG00000005237) #30	GLIPR1L2 (ENSPTRG00000005236) #31	GLIPR1L1 (ENSPTRG00000005234) #32	CAPS2 (ENSPTRG00000005233) #33
Bonobo	MODERN SPECIES	3	METTL25 (ENSPPAG00000028130) #9	CCDC59 (ENSPPAG00000030113) #10	PPFIA2 (ENSPPAG00000033118) #11	ACSS3 (ENSPPAG00000040977) #12	LIN7A (ENSPPAG00000026771) #13	MYF5 (ENSPPAG00000028699) #14	MYF6 (ENSPPAG00000032290) #15	PTPRQ (ENSPPAG00000000830) #16	OTOGL (ENSPPAG00000014085) #17	PPP1R12A (ENSPPAG00000030740) #18	PAWR (ENSPPAG00000043711) #19	SYT1 (ENSPPAG00000029261) #20	ENSPPAG00000028521	ENSPPAG00000015674	NAV3 (ENSPPAG00000036134) #21	E2F7 (ENSPPAG00000002532) #22	ENSPPAG00000042681	ENSPPAG00000042089 #23	ZDHHC17 (ENSPPAG00000030097) #24	ENSPPAG00000040481	OSBPL8 (ENSPPAG00000043423) #25	BBS10 (ENSPPAG00000028532) #26	ENSPPAG00000043638	NAP1L1 (ENSPPAG00000043344) #27	PHLDA1 (ENSPPAG00000030521) #28	KRR1 (ENSPPAG00000011194) #29	GLIPR1 (ENSPPAG00000038902) #30	GLIPR1L2 (ENSPPAG00000038173) #31	GLIPR1L1 (ENSPPAG00000027759) #32	CAPS2 (ENSPPAG00000005409) #33	ENSPPAG00000040201 #34
Human	MODERN SPECIES	3	SLC6A15 (ENSG00000072041) #7	TMTC2 (ENSG00000179104) #8	METTL25 (ENSG00000127720) #9	CCDC59 (ENSG00000133773) #10	PPFIA2 (ENSG00000139220) #11	ACSS3 (ENSG00000111058) #12	LIN7A (ENSG00000111052) #13	MYF5 (ENSG00000111049) #14	MYF6 (ENSG00000111046) #15	PTPRQ (ENSG00000139304) #16	OTOGL (ENSG00000165899) #17	PPP1R12A (ENSG00000058272) #18	PAWR (ENSG00000177425) #19	SYT1 (ENSG00000067715) #20	NAV3 (ENSG00000067798) #21	E2F7 (ENSG00000165891) #22	CSRP2 (ENSG00000175183) #23	ZDHHC17 (ENSG00000186908) #24	OSBPL8 (ENSG00000091039) #25	BBS10 (ENSG00000179941) #26	NAP1L1 (ENSG00000187109) #27	PHLDA1 (ENSG00000139289) #28	KRR1 (ENSG00000111615) #29	GLIPR1 (ENSG00000139278) #30	GLIPR1L2 (ENSG00000180481) #31	GLIPR1L1 (ENSG00000173401) #32	CAPS2 (ENSG00000180881) #33	KCNC2 (ENSG00000166006) #34	ATXN7L3B (ENSG00000253719) #35	TRHDE (ENSG00000072657) #37	TPH2 (ENSG00000139287)
Orangutan	MODERN SPECIES	3	METTL25 (ENSPPYG00000004805) #9	CCDC59 (ENSPPYG00000004804) #10	PPFIA2 (ENSPPYG00000004803) #11	ACSS3 (ENSPPYG00000004802) #12	LIN7A (ENSPPYG00000039262) #13	MYF5 (ENSPPYG00000004800) #14	MYF6 (ENSPPYG00000004799) #15	PTPRQ (ENSPPYG00000041069) #16	OTOGL (ENSPPYG00000004797) #17	PPP1R12A (ENSPPYG00000004796) #18	ENSPPYG00000025853	PAWR (ENSPPYG00000004795) #19	SYT1 (ENSPPYG00000004794) #20	ENSPPYG00000004793	NAV3 (ENSPPYG00000004792) #21	E2F7 (ENSPPYG00000004791) #22	ENSPPYG00000031243 #23	ZDHHC17 (ENSPPYG00000004789) #24	OSBPL8 (ENSPPYG00000004788) #25	ENSPPYG00000037353	BBS10 (ENSPPYG00000004787) #26	ENSPPYG00000032561	NAP1L1 (ENSPPYG00000004786) #27	ENSPPYG00000038710	PHLDA1 (ENSPPYG00000041713) #28	KRR1 (ENSPPYG00000004785) #29	GLIPR1 (ENSPPYG00000004784) #30	GLIPR1L2 (ENSPPYG00000004783) #31	GLIPR1L1 (ENSPPYG00000004782) #32	CAPS2 (ENSPPYG00000004781) #33	KCNC2 (ENSPPYG00000004780) #34
Gibbon	MODERN SPECIES		SLC6A15 (ENSNLEG00000005336) #7	TMTC2 (ENSNLEG00000005311) #8	METTL25 (ENSNLEG00000005299) #9	CCDC59 (ENSNLEG00000033968) #10	PPFIA2 (ENSNLEG00000005251) #11	ACSS3 (ENSNLEG00000005227) #12	LIN7A (ENSNLEG00000032491) #13	MYF5 (ENSNLEG00000005207) #14	MYF6 (ENSNLEG00000032583) #15	PTPRQ (ENSNLEG00000005154) #16	OTOGL (ENSNLEG00000005115) #17	PPP1R12A (ENSNLEG00000005041) #18	PAWR (ENSNLEG00000005035) #19	SYT1 (ENSNLEG00000004995) #20	NAV3 (ENSNLEG00000004917) #21	E2F7 (ENSNLEG00000004897) #22	ENSNLEG00000028737	ENSNLEG00000004885 #23	ZDHHC17 (ENSNLEG00000004841) #24	OSBPL8 (ENSNLEG00000004750) #25	BBS10 (ENSNLEG00000004748) #26	ENSNLEG00000031630	NAP1L1 (ENSNLEG00000004682) #27	ENSNLEG00000004680 #28	KRR1 (ENSNLEG00000004647) #29	GLIPR1 (ENSNLEG00000004629) #30	GLIPR1L2 (ENSNLEG00000004622) #31	GLIPR1L1 (ENSNLEG00000004609) #32	CAPS2 (ENSNLEG00000004582) #33	KCNC2 (ENSNLEG00000004570) #34	ATXN7L3B (ENSNLEG00000018759) #35
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000155142.i.a.a	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000017839.o.b.b.b.f	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000155142.i.a.a	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000017839.o.b.b.b.f	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000155142.i.a.a	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00390000009168.hb	ENSGT01050000244986.b.b.d.a.a.b	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000017839.o.b.b.b.f	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33
Macaca	ANCESTRAL SPECIES	6	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00910000147454	ENSGT00950000183030.m.a.a.b.b.a.b.a	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00390000009168.hb	ENSGT01050000244986.b.b.d.a.a.b	ENSGT00940000156622 #25	ENSGT00960000192410	ENSGT00390000002417 #26	ENSGT00940000153362.a.lb #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34
Pig-tailed macaque	MODERN SPECIES	517	MYF5 (ENSMNEG00000039510) #14	MYF6 (ENSMNEG00000019739) #15	PTPRQ (ENSMNEG00000045562) #16	OTOGL (ENSMNEG00000034772) #17	PPP1R12A (ENSMNEG00000033679) #18	PAWR (ENSMNEG00000004020) #19	SYT1 (ENSMNEG00000030551) #20	ENSMNEG00000031657	ENSMNEG00000038165	ENSMNEG00000037055	ENSMNEG00000028899	ENSMNEG00000026858	ENSMNEG00000009689	ENSMNEG00000000985	NAV3 (ENSMNEG00000043424) #21	E2F7 (ENSMNEG00000025875) #22	CSRP2 (ENSMNEG00000030922) #23	ZDHHC17 (ENSMNEG00000028456) #24	ENSMNEG00000035026	ENSMNEG00000032096	OSBPL8 (ENSMNEG00000028835) #25	ENSMNEG00000030308	BBS10 (ENSMNEG00000040224) #26	NAP1L1 (ENSMNEG00000035793) #27	PHLDA1 (ENSMNEG00000033607) #28	ENSMNEG00000040738	ENSMNEG00000045114	ENSMNEG00000034922 #29	GLIPR1 (ENSMNEG00000044536) #30	GLIPR1L2 (ENSMNEG00000044396) #31	GLIPR1L1 (ENSMNEG00000028603) #32
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00940000157479 #12	ENSGT00940000153052.c.b.a.a.a.a.b.b.b	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.b.a.b.c.b	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00950000183030.m.a.a.b.b.a.b.a	ENSGT00940000158014 #21	ENSGT00940000161627.a.a.a.a.b.a.a.a.b.c.a.a.a.b	ENSGT01050000245239.a.a	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT01050000244986.b.b.d.a.a.b.a	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.lb #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000164709.a.b.b.a.b.b.a.a.a.b
Rhesus	MODERN SPECIES	2	MYF5 (ENSMMUG00000011669) #14	MYF6 (ENSMMUG00000011667) #15	PTPRQ (ENSMMUG00000037711) #16	OTOGL (ENSMMUG00000000121) #17	PPP1R12A (ENSMMUG00000019214) #18	ENSMMUG00000053591	PAWR (ENSMMUG00000015179) #19	SYT1 (ENSMMUG00000005530) #20	ENSMMUG00000060137	ENSMMUG00000051304	ENSMMUG00000058640	NAV3 (ENSMMUG00000021329) #21	ENSMMUG00000060140	ENSMMUG00000055171	ENSMMUG00000059985	E2F7 (ENSMMUG00000022846) #22	ENSMMUG00000052719	CSRP2 (ENSMMUG00000018257) #23	ZDHHC17 (ENSMMUG00000018254) #24	ENSMMUG00000057698	OSBPL8 (ENSMMUG00000017864) #25	BBS10 (ENSMMUG00000056087) #26	NAP1L1 (ENSMMUG00000015583) #27	PHLDA1 (ENSMMUG00000064103) #28	ENSMMUG00000053099	KRR1 (ENSMMUG00000009640) #29	GLIPR1L2 (ENSMMUG00000012290) #31	GLIPR1L1 (ENSMMUG00000012289) #32	CAPS2 (ENSMMUG00000012288) #33	KCNC2 (ENSMMUG00000012362) #34	ENSMMUG00000051853
Crab-eating macaque	MODERN SPECIES	2	PTPRQ (ENSMFAG00000044210) #16	OTOGL (ENSMFAG00000031786) #17	PPP1R12A (ENSMFAG00000034239) #18	ENSMFAG00000049694	ENSMFAG00000063729	PAWR (ENSMFAG00000062333) #19	ENSMFAG00000050054	SYT1 (ENSMFAG00000003495) #20	ENSMFAG00000000157	ENSMFAG00000034379	ENSMFAG00000034925	NAV3 (ENSMFAG00000044289) #21	ENSMFAG00000059233	ENSMFAG00000060207	ENSMFAG00000065572	E2F7 (ENSMFAG00000000355) #22	CSRP2 (ENSMFAG00000033853) #23	ZDHHC17 (ENSMFAG00000042288) #24	ENSMFAG00000034161	ENSMFAG00000047389	ENSMFAG00000057937	OSBPL8 (ENSMFAG00000036321) #25	BBS10 (ENSMFAG00000033883) #26	NAP1L1 (ENSMFAG00000001457) #27	PHLDA1 (ENSMFAG00000001119) #28	ENSMFAG00000053039	ENSMFAG00000032969	ENSMFAG00000001123	KRR1 (ENSMFAG00000000042) #29	GLIPR1 (ENSMFAG00000003978) #30	GLIPR1L1 (ENSMFAG00000031259) #32
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000153294.m.b.s.f	ENSGT00390000014818.g.b.a.a.a.b.b	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000155142.i.a.a	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00390000009168.hb	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000158854.ab.a	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000155142.i.a.a	ENSGT00390000003133.i.a	ENSGT00940000163914.c.a	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00390000009168.hb	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000158854.ab.a	ENSGT00390000018052.k	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34
Drill	MODERN SPECIES	821				PPP1R12A (ENSMLEG00000040285) #18	PAWR (ENSMLEG00000041230) #19	ENSMLEG00000039162	SYT1 (ENSMLEG00000029930) #20	ENSMLEG00000037266	ENSMLEG00000014509	ENSMLEG00000028959	ENSMLEG00000035186	ENSMLEG00000020902	ENSMLEG00000034369	ENSMLEG00000027815	NAV3 (ENSMLEG00000033553) #21	E2F7 (ENSMLEG00000040254) #22	CSRP2 (ENSMLEG00000041421) #23	ZDHHC17 (ENSMLEG00000009010) #24	ENSMLEG00000042240	ENSMLEG00000040060	OSBPL8 (ENSMLEG00000035972) #25	BBS10 (ENSMLEG00000042359) #26	NAP1L1 (ENSMLEG00000044434) #27	PHLDA1 (ENSMLEG00000037110) #28	ENSMLEG00000027928	ENSMLEG00000039434	ENSMLEG00000042283	KRR1 (ENSMLEG00000037074) #29	GLIPR1 (ENSMLEG00000037327) #30	GLIPR1L2 (ENSMLEG00000040765) #31	GLIPR1L1 (ENSMLEG00000020393) #32
Sooty mangabey	MODERN SPECIES	582	ENSCATG00000038856	PPFIA2 (ENSCATG00000040747) #11	ACSS3 (ENSCATG00000030914) #12	LIN7A (ENSCATG00000029939) #13	MYF5 (ENSCATG00000042162) #14	MYF6 (ENSCATG00000029151) #15	PTPRQ (ENSCATG00000039610) #16	OTOGL (ENSCATG00000038125) #17	PPP1R12A (ENSCATG00000038278) #18	PAWR (ENSCATG00000034935) #19	SYT1 (ENSCATG00000033541) #20	ENSCATG00000044466	ENSCATG00000040529	ENSCATG00000017337	NAV3 (ENSCATG00000032040) #21	E2F7 (ENSCATG00000035481) #22	CSRP2 (ENSCATG00000040566) #23	ZDHHC17 (ENSCATG00000040479) #24	ENSCATG00000044128	ENSCATG00000039522	ENSCATG00000005498	OSBPL8 (ENSCATG00000036635) #25	BBS10 (ENSCATG00000042101) #26	ENSCATG00000039964	NAP1L1 (ENSCATG00000032285) #27	ENSCATG00000010102	ENSCATG00000040362	KRR1 (ENSCATG00000038219) #29	GLIPR1 (ENSCATG00000007700) #30	GLIPR1L2 (ENSCATG00000032595) #31	GLIPR1L1 (ENSCATG00000035838) #32
Olive baboon	MODERN SPECIES	19	ACSS3 (ENSPANG00000019084) #12	LIN7A (ENSPANG00000005931) #13	MYF5 (ENSPANG00000020394) #14	MYF6 (ENSPANG00000044306) #15	ENSPANG00000005319	PTPRQ (ENSPANG00000014456) #16	OTOGL (ENSPANG00000012907) #17	ENSPANG00000047805	PPP1R12A (ENSPANG00000026354) #18	PAWR (ENSPANG00000009557) #19	SYT1 (ENSPANG00000009048) #20	ENSPANG00000040020	ENSPANG00000015985	ENSPANG00000043139	NAV3 (ENSPANG00000007911) #21	E2F7 (ENSPANG00000004929) #22	CSRP2 (ENSPANG00000023047) #23	ZDHHC17 (ENSPANG00000004050) #24	ENSPANG00000028903	OSBPL8 (ENSPANG00000009379) #25	BBS10 (ENSPANG00000026355) #26	NAP1L1 (ENSPANG00000009165) #27	PHLDA1 (ENSPANG00000013115) #28	ENSPANG00000048738	ENSPANG00000047595	ENSPANG00000031665	KRR1 (ENSPANG00000019085) #29	GLIPR1 (ENSPANG00000005562) #30	GLIPR1L2 (ENSPANG00000036151) #31	GLIPR1L1 (ENSPANG00000032562) #32	CAPS2 (ENSPANG00000017443) #33
Vervet Monkey	MODERN SPECIES	2	CCDC59 (ENSCSAG00000003867) #10	ENSCSAG00000003868 #11	PPFIA2 (ENSCSAG00000003876) #11	ACSS3 (ENSCSAG00000003882) #12	LIN7A (ENSCSAG00000003887) #13	MYF5 (ENSCSAG00000003889) #14	MYF6 (ENSCSAG00000003893) #15	PTPRQ (ENSCSAG00000003913) #16	OTOGL (ENSCSAG00000003939) #17	PPP1R12A (ENSCSAG00000003956) #18	PAWR (ENSCSAG00000003962) #19	SYT1 (ENSCSAG00000003971) #20	ENSCSAG00000018914	ENSCSAG00000018912	ENSCSAG00000003979 #21	E2F7 (ENSCSAG00000003998) #22	CSRP2 (ENSCSAG00000004009) #23	ZDHHC17 (ENSCSAG00000004014) #24	OSBPL8 (ENSCSAG00000004024) #25	BBS10 (ENSCSAG00000004028) #26	NAP1L1 (ENSCSAG00000004030) #27	ENSCSAG00000018909	KRR1 (ENSCSAG00000004034) #29	GLIPR1 (ENSCSAG00000004038) #30	GLIPR1L2 (ENSCSAG00000004041) #31	GLIPR1L1 (ENSCSAG00000004045) #32	CAPS2 (ENSCSAG00000004056) #33	KCNC2 (ENSCSAG00000004064) #34	ATXN7L3B (ENSCSAG00000018907) #35	TRHDE (ENSCSAG00000004072) #37	TBC1D15 (ENSCSAG00000004078)
Rhinopithecus	ANCESTRAL SPECIES	358														ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34
Black snub-nosed monkey	MODERN SPECIES	416												ENSRBIG00000044674	ENSRBIG00000044553	ENSRBIG00000035549	NAV3 (ENSRBIG00000032816) #21	E2F7 (ENSRBIG00000044218) #22	CSRP2 (ENSRBIG00000001565) #23	ZDHHC17 (ENSRBIG00000036627) #24	OSBPL8 (ENSRBIG00000042807) #25	BBS10 (ENSRBIG00000044840) #26	ENSRBIG00000044471 #27	ENSRBIG00000039726	PHLDA1 (ENSRBIG00000034999) #28	ENSRBIG00000034429	ENSRBIG00000029304	KRR1 (ENSRBIG00000033716) #29	GLIPR1 (ENSRBIG00000034588) #30	GLIPR1L2 (ENSRBIG00000040782) #31	GLIPR1L1 (ENSRBIG00000031640) #32
Golden snub-nosed monkey	MODERN SPECIES	1031																E2F7 (ENSRROG00000031867) #22	CSRP2 (ENSRROG00000031526) #23	ZDHHC17 (ENSRROG00000039872) #24	OSBPL8 (ENSRROG00000042405) #25	BBS10 (ENSRROG00000028824) #26	ENSRROG00000014250	NAP1L1 (ENSRROG00000026775) #27	ENSRROG00000033201	PHLDA1 (ENSRROG00000007029) #28	ENSRROG00000024996	ENSRROG00000037708	KRR1 (ENSRROG00000029658) #29	GLIPR1 (ENSRROG00000043395) #30	ENSRROG00000041620	ENSRROG00000016846	GLIPR1L2 (ENSRROG00000017927) #31
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00910000148286	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.u.a.b #23	ENSGT00940000154980.u.a.a #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00910000147072.b	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35
Cebidae	ANCESTRAL SPECIES	2	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.u.a.a #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00910000147072.b	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Cebidae_a	ANCESTRAL SPECIES	8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00550000074807.d	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.u.a.a #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00910000147072.b	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Capuchin	MODERN SPECIES	67													ALCAM (ENSCCAG00000034808)	ENSCCAG00000036645	CBLB (ENSCCAG00000031829)	E2F7 (ENSCCAG00000020477) #22	CSRP2 (ENSCCAG00000027954) #23	ZDHHC17 (ENSCCAG00000024753) #24	ENSCCAG00000026832 #25	BBS10 (ENSCCAG00000010754) #26	NAP1L1 (ENSCCAG00000030757) #27	ENSCCAG00000029133	PHLDA1 (ENSCCAG00000030384) #28	GLIPR1 (ENSCCAG00000033906) #30	KRR1 (ENSCCAG00000021457) #29	GLIPR1L2 (ENSCCAG00000021275) #31	GLIPR1L1 (ENSCCAG00000006107) #32	CAPS2 (ENSCCAG00000033136) #33	KCNC2 (ENSCCAG00000028917) #34	ENSCCAG00000000428	ENSCCAG00000010640
Bolivian squirrel monkey	MODERN SPECIES	67	ACSS3 (ENSSBOG00000018710) #12	ENSSBOG00000022040	ENSSBOG00000034028	LIN7A (ENSSBOG00000030034) #13	MYF5 (ENSSBOG00000019536) #14	MYF6 (ENSSBOG00000021822) #15	PTPRQ (ENSSBOG00000027538) #16	OTOGL (ENSSBOG00000033681) #17	ENSSBOG00000026289	PPP1R12A (ENSSBOG00000033660) #18	PAWR (ENSSBOG00000025731) #19	SYT1 (ENSSBOG00000033271) #20	ENSSBOG00000025849	ENSSBOG00000036163	NAV3 (ENSSBOG00000036099) #21	E2F7 (ENSSBOG00000028674) #22	ENSSBOG00000014459 #23	ZDHHC17 (ENSSBOG00000036173) #24	OSBPL8 (ENSSBOG00000030671) #25	BBS10 (ENSSBOG00000022169) #26	ENSSBOG00000034714 #27	KRR1 (ENSSBOG00000029569) #29	GLIPR1 (ENSSBOG00000033770) #30	ENSSBOG00000025791	GLIPR1L2 (ENSSBOG00000027126) #31	GLIPR1L1 (ENSSBOG00000033891) #32	CAPS2 (ENSSBOG00000018991) #33	KCNC2 (ENSSBOG00000022617) #34	ATXN7L3B (ENSSBOG00000006505) #35	TRHDE (ENSSBOG00000029813) #37	TPH2 (ENSSBOG00000029996)
Marmoset	MODERN SPECIES	21	METTL25 (ENSCJAG00000019400) #9	CCDC59 (ENSCJAG00000019396) #10	PPFIA2 (ENSCJAG00000019370) #11	ACSS3 (ENSCJAG00000019352) #12	LIN7A (ENSCJAG00000019343) #13	MYF5 (ENSCJAG00000019340) #14	MYF6 (ENSCJAG00000081789) #15	PTPRQ (ENSCJAG00000019332) #16	OTOGL (ENSCJAG00000019323) #17	PPP1R12A (ENSCJAG00000019271) #18	PAWR (ENSCJAG00000019265) #19	SYT1 (ENSCJAG00000019262) #20	ENSCJAG00000078194	ENSCJAG00000078124	NAV3 (ENSCJAG00000019176) #21	E2F7 (ENSCJAG00000019162) #22	ENSCJAG00000019153 #23	ZDHHC17 (ENSCJAG00000019075) #24	OSBPL8 (ENSCJAG00000001055) #25	BBS10 (ENSCJAG00000001113) #26	ENSCJAG00000078161	NAP1L1 (ENSCJAG00000001115) #27	PHLDA1 (ENSCJAG00000072700) #28	ENSCJAG00000075772	ENSCJAG00000077543	ENSCJAG00000070252	ENSCJAG00000077700	KRR1 (ENSCJAG00000001181) #29	ENSCJAG00000069534	GLIPR1L2 (ENSCJAG00000001222) #31	ENSCJAG00000083004
Mas night monkey	MODERN SPECIES	833	ACSS3 (ENSANAG00000034361) #12	LIN7A (ENSANAG00000032889) #13	MYF5 (ENSANAG00000023208) #14	MYF6 (ENSANAG00000024892) #15	PTPRQ (ENSANAG00000035871) #16	OTOGL (ENSANAG00000024695) #17	ENSANAG00000036662	ENSANAG00000019658	PPP1R12A (ENSANAG00000034824) #18	PAWR (ENSANAG00000022396) #19	SYT1 (ENSANAG00000025826) #20	ENSANAG00000023157	ENSANAG00000023582	NAV3 (ENSANAG00000037686) #21	ENSANAG00000032226	E2F7 (ENSANAG00000036545) #22	ENSANAG00000021237 #23	ENSANAG00000028981	ENSANAG00000023471	ZDHHC17 (ENSANAG00000030636) #24
Tarsier	MODERN SPECIES	6007																E2F7 (ENSTSYG00000008243) #22	CSRP2 (ENSTSYG00000007974) #23	ZDHHC17 (ENSTSYG00000007950) #24
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394.b #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394.b #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Mouse lemur	MODERN SPECIES	29	TMTC2 (ENSMICG00000031682) #8	METTL25 (ENSMICG00000027175) #9	CCDC59 (ENSMICG00000041747) #10	PPFIA2 (ENSMICG00000010822) #11	ACSS3 (ENSMICG00000010809) #12	LIN7A (ENSMICG00000033894) #13	MYF5 (ENSMICG00000036139) #14	MYF6 (ENSMICG00000004274) #15	PTPRQ (ENSMICG00000038737) #16	OTOGL (ENSMICG00000026871) #17	PPP1R12A (ENSMICG00000032335) #18	ENSMICG00000032513	PAWR (ENSMICG00000031649) #19	SYT1 (ENSMICG00000015517) #20	NAV3 (ENSMICG00000003403) #21	E2F7 (ENSMICG00000013872) #22	ENSMICG00000014368	CSRP2 (ENSMICG00000047076) #23	ZDHHC17 (ENSMICG00000033453) #24	ENSMICG00000029525	OSBPL8 (ENSMICG00000000969) #25	BBS10 (ENSMICG00000042947) #26	NAP1L1 (ENSMICG00000006036) #27	KRR1 (ENSMICG00000015127) #29	GLIPR1 (ENSMICG00000015121) #30	GLIPR1L2 (ENSMICG00000037234) #31	ENSMICG00000015888 #32	CAPS2 (ENSMICG00000015872) #33	KCNC2 (ENSMICG00000017734) #34	ATXN7L3B (ENSMICG00000033344) #35	TRHDE (ENSMICG00000014223) #37
Lemuriformes_a	ANCESTRAL SPECIES	201															ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000161696	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35
Coquerels sifaka	MODERN SPECIES	402														NAV3 (ENSPCOG00000028313) #21	ENSPCOG00000013372	E2F7 (ENSPCOG00000022301) #22	CSRP2 (ENSPCOG00000019899) #23	ZDHHC17 (ENSPCOG00000018266) #24	OSBPL8 (ENSPCOG00000022869) #25	BBS10 (ENSPCOG00000025178) #26	ENSPCOG00000022339	PHLDA1 (ENSPCOG00000020854) #28	KRR1 (ENSPCOG00000012869) #29	GLIPR1 (ENSPCOG00000017258) #30
Greater bamboo lemur	MODERN SPECIES	749													NAV3 (ENSPSMG00000004708) #21	ENSPSMG00000004524	ENSPSMG00000004520	E2F7 (ENSPSMG00000004506) #22	CSRP2 (ENSPSMG00000004453) #23	ZDHHC17 (ENSPSMG00000004438) #24	ENSPSMG00000004399	OSBPL8 (ENSPSMG00000004309) #25
Bushbaby	MODERN SPECIES	122	METTL25 (ENSOGAG00000004384) #9	CCDC59 (ENSOGAG00000004383) #10	ENSOGAG00000025088	PPFIA2 (ENSOGAG00000014823) #11	ACSS3 (ENSOGAG00000014813) #12	LIN7A (ENSOGAG00000004616) #13	MYF5 (ENSOGAG00000001039) #14	MYF6 (ENSOGAG00000001038) #15	PTPRQ (ENSOGAG00000025362) #16	OTOGL (ENSOGAG00000030466) #17	PPP1R12A (ENSOGAG00000010740) #18	PAWR (ENSOGAG00000027944) #19	SYT1 (ENSOGAG00000009943) #20	NAV3 (ENSOGAG00000010604) #21	ENSOGAG00000030290	E2F7 (ENSOGAG00000010821) #22	CSRP2 (ENSOGAG00000013999) #23	ZDHHC17 (ENSOGAG00000013994) #24	OSBPL8 (ENSOGAG00000017084) #25	BBS10 (ENSOGAG00000025855) #26	NAP1L1 (ENSOGAG00000010319) #27	PHLDA1 (ENSOGAG00000010317) #28	ENSOGAG00000010313 #29	GLIPR1 (ENSOGAG00000010309) #30	GLIPR1L2 (ENSOGAG00000010303) #31	ENSOGAG00000010299 #32	CAPS2 (ENSOGAG00000010291) #33	ENSOGAG00000006608	KCNC2 (ENSOGAG00000000768) #34
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000157713 #22
Common shrew	MODERN SPECIES	4683																E2F7 (ENSSARG00000004122) #22
Hedgehog	MODERN SPECIES	6020																ENSEEUG00000000248 #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Carnivora	ANCESTRAL SPECIES	3	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Caniformia	ANCESTRAL SPECIES	20	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Ursidae	ANCESTRAL SPECIES	13	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Ursus	ANCESTRAL SPECIES	23															ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	113														NAV3 (ENSUMAG00000021555) #21	ENSUMAG00000021519 #22	ENSUMAG00000021516 #22	CSRP2 (ENSUMAG00000021507) #23	ZDHHC17 (ENSUMAG00000021425) #24	OSBPL8 (ENSUMAG00000021330) #25	BBS10 (ENSUMAG00000021286) #26	NAP1L1 (ENSUMAG00000021259) #27	KRR1 (ENSUMAG00000021247) #29	GLIPR1 (ENSUMAG00000021245) #30	ENSUMAG00000021242	GLIPR1L2 (ENSUMAG00000021237) #31	GLIPR1L1 (ENSUMAG00000021232) #32	ENSUMAG00000021228 #33	KCNC2 (ENSUMAG00000021219) #34	ENSUMAG00000021205	ATXN7L3B (ENSUMAG00000021202) #35	ENSUMAG00000021192
Polar bear	MODERN SPECIES	113															NAV3 (ENSUMAG00000021555) #21	ENSUMAG00000021519 #22	ENSUMAG00000021516 #22	CSRP2 (ENSUMAG00000021507) #23	ZDHHC17 (ENSUMAG00000021425) #24	OSBPL8 (ENSUMAG00000021330) #25	BBS10 (ENSUMAG00000021286) #26	NAP1L1 (ENSUMAG00000021259) #27	KRR1 (ENSUMAG00000021247) #29	GLIPR1 (ENSUMAG00000021245) #30	ENSUMAG00000021242	GLIPR1L2 (ENSUMAG00000021237) #31	GLIPR1L1 (ENSUMAG00000021232) #32	ENSUMAG00000021228 #33	KCNC2 (ENSUMAG00000021219) #34	ENSUMAG00000021205	ATXN7L3B (ENSUMAG00000021202) #35
American black bear	DUPLICATION
American black bear	MODERN SPECIES	1323																ENSUAMG00000027982 #22	ENSUAMG00000027981 #22
American black bear	MODERN SPECIES	1323															ENSUAMG00000027982 #22	ENSUAMG00000027981 #22
Giant Panda	MODERN SPECIES	6	TMTC2 (ENSAMEG00000016881) #8	METTL25 (ENSAMEG00000016877) #9	CCDC59 (ENSAMEG00000016875) #10	PPFIA2 (ENSAMEG00000013096) #11	ACSS3 (ENSAMEG00000013162) #12	LIN7A (ENSAMEG00000013191) #13	MYF5 (ENSAMEG00000013193) #14	MYF6 (ENSAMEG00000027013) #15	PTPRQ (ENSAMEG00000013219) #16	OTOGL (ENSAMEG00000013267) #17	PPP1R12A (ENSAMEG00000013280) #18	PAWR (ENSAMEG00000013370) #19	SYT1 (ENSAMEG00000013376) #20	NAV3 (ENSAMEG00000006673) #21	ENSAMEG00000024301	E2F7 (ENSAMEG00000007247) #22	CSRP2 (ENSAMEG00000006632) #23	ZDHHC17 (ENSAMEG00000006600) #24	OSBPL8 (ENSAMEG00000006513) #25	BBS10 (ENSAMEG00000006510) #26	NAP1L1 (ENSAMEG00000006463) #27	PHLDA1 (ENSAMEG00000006460) #28	KRR1 (ENSAMEG00000006437) #29	GLIPR1 (ENSAMEG00000006427) #30	GLIPR1L2 (ENSAMEG00000006424) #31	GLIPR1L1 (ENSAMEG00000006420) #32	CAPS2 (ENSAMEG00000006378) #33	KCNC2 (ENSAMEG00000000555) #34	ENSAMEG00000030227	ATXN7L3B (ENSAMEG00000018742) #35	TRHDE (ENSAMEG00000000316) #37
Mustelinae	ANCESTRAL SPECIES	4	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215.b.a #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Ferret	MODERN SPECIES	196					ENSMPUG00000017457	ENSMPUG00000017458	OTOGL (ENSMPUG00000017459) #17	PPP1R12A (ENSMPUG00000017460) #18	ENSMPUG00000017461	PAWR (ENSMPUG00000017462) #19	SYT1 (ENSMPUG00000017463) #20	ENSMPUG00000017464	NAV3 (ENSMPUG00000017465) #21	ENSMPUG00000017466	ENSMPUG00000017467	E2F7 (ENSMPUG00000017468) #22	CSRP2 (ENSMPUG00000017469) #23	ZDHHC17 (ENSMPUG00000017470) #24	ENSMPUG00000017471	OSBPL8 (ENSMPUG00000017472) #25	BBS10 (ENSMPUG00000017473) #26	NAP1L1 (ENSMPUG00000017474) #27	KRR1 (ENSMPUG00000017475) #29	GLIPR1 (ENSMPUG00000017476) #30	GLIPR1L2 (ENSMPUG00000017477) #31	ENSMPUG00000017478 #32	CAPS2 (ENSMPUG00000017479) #33	KCNC2 (ENSMPUG00000017480) #34	ENSMPUG00000017481 #35	TRHDE (ENSMPUG00000017482) #37	TPH2 (ENSMPUG00000017483)
American mink	MODERN SPECIES	22	METTL25 (ENSNVIG00000000819) #9	TAP26 (ENSNVIG00000000828) #10	PPFIA2 (ENSNVIG00000000848) #11	ACSS3 (ENSNVIG00000001229) #12	LIN7A (ENSNVIG00000001269) #13	MYF5 (ENSNVIG00000001283) #14	MYF6 (ENSNVIG00000001298) #15	PTPRQ (ENSNVIG00000001320) #16	OTOGL (ENSNVIG00000001579) #17	ENSNVIG00000001919	PPP1R12A (ENSNVIG00000001940) #18	PAWR (ENSNVIG00000002283) #19	SYT1 (ENSNVIG00000002313) #20	ENSNVIG00000002371	NAV3 (ENSNVIG00000002412) #21	E2F7 (ENSNVIG00000002695) #22	ENSNVIG00000002763 #23	ZDHHC17 (ENSNVIG00000002801) #24	OSBPL8 (ENSNVIG00000002847) #25	BBS10 (ENSNVIG00000003073) #26	ENSNVIG00000003110 #27	ENSNVIG00000003475	PHLDA1 (ENSNVIG00000003490) #28	KRR1 (ENSNVIG00000003506) #29	GLIPR1 (ENSNVIG00000003537) #30	ENSNVIG00000003558 #31	GLIPR1L1 (ENSNVIG00000003573) #32	CAPS2 (ENSNVIG00000003600) #33	KCNC2 (ENSNVIG00000003636) #34	ATXN7L3B (ENSNVIG00000003667) #35
Canidae	ANCESTRAL SPECIES	12	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000005922.b.d.b.a.j	ENSGT00390000018775 #29	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.e.a	ENSGT00940000153886.a.a.k	ENSGT00940000153649.B
Canis_lupus	DUPLICATION
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000158890.p.a.f	ENSGT00940000157713.q #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000154612.m.a.g.a.b	ENSGT00390000005922.b.d.b.a.j	ENSGT00390000018775 #29	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.e.a	ENSGT00940000153886.a.a.k
Dog	MODERN SPECIES	6	CCDC59 (ENSCAFG00845011151) #10	PPFIA2 (ENSCAFG00845010311) #11	ACSS3 (ENSCAFG00845009887) #12	LIN7A (ENSCAFG00845009762) #13	ENSCAFG00845009734 #14	MYF6 (ENSCAFG00845009704) #15	PTPRQ (ENSCAFG00845008887) #16	OTOGL (ENSCAFG00845008423) #17	ENSCAFG00845008343	ENSCAFG00845008317	PPP1R12A (ENSCAFG00845007952) #18	PAWR (ENSCAFG00845007786) #19	SYT1 (ENSCAFG00845007651) #20	NAV3 (ENSCAFG00845007345) #21	ENSCAFG00845007259	E2F7 (ENSCAFG00845006897) #22	ENSCAFG00845006746 #23	ZDHHC17 (ENSCAFG00845006644) #24	OSBPL8 (ENSCAFG00845006249) #25	OSBPL8 (ENSCAFG00845006103) #26	ENSCAFG00845006055	NAP1L1 (ENSCAFG00845005932) #27	ENSCAFG00845005752 #28	ENSCAFG00845027430	ENSCAFG00845027179 #29	OR4E1 (ENSCAFG00845027061)	OR4E2 (ENSCAFG00845026975)	SALL2 (ENSCAFG00845026880)	METTL3 (ENSCAFG00845026804)	TOX4 (ENSCAFG00845026715)	RAB2B (ENSCAFG00845026579)
Dingo	MODERN SPECIES	277	CCDC59 (ENSCAFG00020016153) #10	PPFIA2 (ENSCAFG00020016113) #11	ACSS3 (ENSCAFG00020016033) #12	LIN7A (ENSCAFG00020016013) #13	MYF5 (ENSCAFG00020016010) #14	MYF6 (ENSCAFG00020016005) #15	PTPRQ (ENSCAFG00020015957) #16	OTOGL (ENSCAFG00020015840) #17	PPP1R12A (ENSCAFG00020015626) #18	PAWR (ENSCAFG00020015607) #19	SYT1 (ENSCAFG00020015603) #20	ENSCAFG00020015601	NAV3 (ENSCAFG00020015546) #21	ENSCAFG00020015535	ENSCAFG00020015528	ENSCAFG00020015522 #22	ENSCAFG00020015518 #22	CSRP2 (ENSCAFG00020015512) #23	ZDHHC17 (ENSCAFG00020015453) #24	OSBPL8 (ENSCAFG00020015356) #25	BBS10 (ENSCAFG00020015335) #26	NAP1L1 (ENSCAFG00020015328) #27	ENSCAFG00020015316 #28	ENSCAFG00020015310	ENSCAFG00020015296	KRR1 (ENSCAFG00020015286) #29	OR4E1 (ENSCAFG00020015285)	OR4E2 (ENSCAFG00020015283)	SALL2 (ENSCAFG00020015273)	METTL3 (ENSCAFG00020015265)	ENSCAFG00020015261
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00940000157713.r #22
Dingo	MODERN SPECIES	277	PPFIA2 (ENSCAFG00020016113) #11	ACSS3 (ENSCAFG00020016033) #12	LIN7A (ENSCAFG00020016013) #13	MYF5 (ENSCAFG00020016010) #14	MYF6 (ENSCAFG00020016005) #15	PTPRQ (ENSCAFG00020015957) #16	OTOGL (ENSCAFG00020015840) #17	PPP1R12A (ENSCAFG00020015626) #18	PAWR (ENSCAFG00020015607) #19	SYT1 (ENSCAFG00020015603) #20	ENSCAFG00020015601	NAV3 (ENSCAFG00020015546) #21	ENSCAFG00020015535	ENSCAFG00020015528	ENSCAFG00020015522 #22	ENSCAFG00020015518 #22	CSRP2 (ENSCAFG00020015512) #23	ZDHHC17 (ENSCAFG00020015453) #24	OSBPL8 (ENSCAFG00020015356) #25	BBS10 (ENSCAFG00020015335) #26	NAP1L1 (ENSCAFG00020015328) #27	ENSCAFG00020015316 #28	ENSCAFG00020015310	ENSCAFG00020015296	KRR1 (ENSCAFG00020015286) #29	OR4E1 (ENSCAFG00020015285)	OR4E2 (ENSCAFG00020015283)	SALL2 (ENSCAFG00020015273)	METTL3 (ENSCAFG00020015265)	ENSCAFG00020015261	ENSCAFG00020015235
Red fox	MODERN SPECIES	9	METTL25 (ENSVVUG00000010971) #9	CCDC59 (ENSVVUG00000010954) #10	ENSVVUG00000010950	PPFIA2 (ENSVVUG00000010745) #11	ACSS3 (ENSVVUG00000010570) #12	LIN7A (ENSVVUG00000010554) #13	ENSVVUG00000010537 #14	MYF6 (ENSVVUG00000010529) #15	PTPRQ (ENSVVUG00000010403) #16	ENSVVUG00000010366	OTOGL (ENSVVUG00000010103) #17	PPP1R12A (ENSVVUG00000010043) #18	PAWR (ENSVVUG00000010028) #19	SYT1 (ENSVVUG00000009998) #20	NAV3 (ENSVVUG00000009882) #21	E2F7 (ENSVVUG00000009839) #22	CSRP2 (ENSVVUG00000009828) #23	ZDHHC17 (ENSVVUG00000009811) #24	OSBPL8 (ENSVVUG00000009692) #25	BBS10 (ENSVVUG00000009650) #26	NAP1L1 (ENSVVUG00000009610) #27	ENSVVUG00000009581	KRR1 (ENSVVUG00000009566) #29	OR4E1 (ENSVVUG00000009561)	OR4E2 (ENSVVUG00000009557)	ENSVVUG00000009540	METTL3 (ENSVVUG00000009513)	TOX4 (ENSVVUG00000009505)	RAB2B (ENSVVUG00000009502)	CHD8 (ENSVVUG00000009444)	SUPT16H (ENSVVUG00000009434)
Felidae	ANCESTRAL SPECIES	2	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576.g #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Panthera	ANCESTRAL SPECIES		ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576.g #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Tiger	MODERN SPECIES	285					PPFIA2 (ENSPTIG00000008257) #11	ACSS3 (ENSPTIG00000013083) #12	LIN7A (ENSPTIG00000013465) #13	MYF5 (ENSPTIG00000013849) #14	MYF6 (ENSPTIG00000014009) #15	PTPRQ (ENSPTIG00000014182) #16	OTOGL (ENSPTIG00000017536) #17	PPP1R12A (ENSPTIG00000003820) #18	PAWR (ENSPTIG00000012722) #19	SYT1 (ENSPTIG00000013094) #20	NAV3 (ENSPTIG00000013673) #21	E2F7 (ENSPTIG00000016920) #22	CSRP2 (ENSPTIG00000019308) #23	ZDHHC17 (ENSPTIG00000019755) #24	OSBPL8 (ENSPTIG00000019983) #25	BBS10 (ENSPTIG00000020383) #26	NAP1L1 (ENSPTIG00000003186) #27	KRR1 (ENSPTIG00000009202) #29	GLIPR1 (ENSPTIG00000010519) #30	GLIPR1L2 (ENSPTIG00000011160) #31	GLIPR1L1 (ENSPTIG00000011807) #32	CAPS2 (ENSPTIG00000012593) #33	ENSPTIG00000013059 #34	ATXN7L3B (ENSPTIG00000004593) #35
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576.g #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
leopard	MODERN SPECIES	27	METTL25 (ENSPPRG00000020885) #9	CCDC59 (ENSPPRG00000022500) #10	ENSPPRG00000024977	PPFIA2 (ENSPPRG00000001816) #11	ACSS3 (ENSPPRG00000003248) #12	LIN7A (ENSPPRG00000003439) #13	MYF5 (ENSPPRG00000003820) #14	MYF6 (ENSPPRG00000003909) #15	PTPRQ (ENSPPRG00000005300) #16	OTOGL (ENSPPRG00000007761) #17	PPP1R12A (ENSPPRG00000012756) #18	ENSPPRG00000013642	PAWR (ENSPPRG00000013959) #19	SYT1 (ENSPPRG00000014210) #20	NAV3 (ENSPPRG00000022007) #21	E2F7 (ENSPPRG00000024442) #22	CSRP2 (ENSPPRG00000024205) #23	ZDHHC17 (ENSPPRG00000024071) #24	ENSPPRG00000023878	OSBPL8 (ENSPPRG00000023047) #25	BBS10 (ENSPPRG00000022774) #26	ENSPPRG00000000117	NAP1L1 (ENSPPRG00000001906) #27	ENSPPRG00000002277	KRR1 (ENSPPRG00000002897) #29	GLIPR1 (ENSPPRG00000003347) #30	GLIPR1L2 (ENSPPRG00000003609) #31	GLIPR1L1 (ENSPPRG00000004020) #32	CAPS2 (ENSPPRG00000004169) #33	ENSPPRG00000004904 #34	KCNC2 (ENSPPRG00000006532) #34
lion	MODERN SPECIES	7	TMTC2 (ENSPLOG00000004411) #8	METTL25 (ENSPLOG00000004346) #9	CCDC59 (ENSPLOG00000004335) #10	PPFIA2 (ENSPLOG00000003973) #11	ACSS3 (ENSPLOG00000003703) #12	LIN7A (ENSPLOG00000003686) #13	MYF5 (ENSPLOG00000003675) #14	MYF6 (ENSPLOG00000003667) #15	PTPRQ (ENSPLOG00000003543) #16	OTOGL (ENSPLOG00000003151) #17	PPP1R12A (ENSPLOG00000002780) #18	PAWR (ENSPLOG00000002686) #19	SYT1 (ENSPLOG00000002662) #20	ENSPLOG00000002650	NAV3 (ENSPLOG00000002454) #21	E2F7 (ENSPLOG00000002314) #22	CSRP2 (ENSPLOG00000002279) #23	ZDHHC17 (ENSPLOG00000002249) #24	OSBPL8 (ENSPLOG00000002092) #25	BBS10 (ENSPLOG00000002053) #26	NAP1L1 (ENSPLOG00000001982) #27	PHLDA1 (ENSPLOG00000001933) #28	KRR1 (ENSPLOG00000001901) #29	GLIPR1 (ENSPLOG00000001884) #30	GLIPR1L2 (ENSPLOG00000001854) #31	GLIPR1L1 (ENSPLOG00000001832) #32	CAPS2 (ENSPLOG00000001806) #33	KCNC2 (ENSPLOG00000001773) #34	ENSPLOG00000001747 #35	ENSPLOG00000001740	ENSPLOG00000001713 #37
Cat	MODERN SPECIES	238	ENSFCAG00000035513	METTL25 (ENSFCAG00000013377) #9	CCDC59 (ENSFCAG00000028462) #10	PPFIA2 (ENSFCAG00000012993) #11	ACSS3 (ENSFCAG00000012992) #12	LIN7A (ENSFCAG00000015014) #13	MYF5 (ENSFCAG00000015011) #14	MYF6 (ENSFCAG00000015010) #15	PTPRQ (ENSFCAG00000026313) #16	OTOGL (ENSFCAG00000022141) #17	PPP1R12A (ENSFCAG00000027965) #18	PAWR (ENSFCAG00000026300) #19	SYT1 (ENSFCAG00000024865) #20	ENSFCAG00000048215	NAV3 (ENSFCAG00000013128) #21	E2F7 (ENSFCAG00000010756) #22	CSRP2 (ENSFCAG00000006548) #23	ZDHHC17 (ENSFCAG00000027034) #24	OSBPL8 (ENSFCAG00000027470) #25	NAP1L1 (ENSFCAG00000000279) #27	PHLDA1 (ENSFCAG00000032023) #28	ENSFCAG00000050261	KRR1 (ENSFCAG00000025788) #29	GLIPR1 (ENSFCAG00000005203) #30	GLIPR1L2 (ENSFCAG00000036590) #31	ENSFCAG00000041131 #32	ENSFCAG00000047626	CAPS2 (ENSFCAG00000040419) #33	KCNC2 (ENSFCAG00000024443) #34	ENSFCAG00000028757 #35	ENSFCAG00000050848
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Equus	ANCESTRAL SPECIES	21	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Donkey	MODERN SPECIES	11	METTL25 (ENSEASG00005021236) #9	CCDC59 (ENSEASG00005021237) #10	ENSEASG00005011113	PPFIA2 (ENSEASG00005021241) #11	ACSS3 (ENSEASG00005021261) #12	ENSEASG00005024557	LIN7A (ENSEASG00005021265) #13	MYF5 (ENSEASG00005021266) #14	MYF6 (ENSEASG00005021268) #15	PTPRQ (ENSEASG00005021271) #16	OTOGL (ENSEASG00005021304) #17	PPP1R12A (ENSEASG00005021353) #18	PAWR (ENSEASG00005033077) #19	SYT1 (ENSEASG00005021375) #20	NAV3 (ENSEASG00005021551) #21	E2F7 (ENSEASG00005021935) #22	ENSEASG00005021936 #23	ZDHHC17 (ENSEASG00005021939) #24	OSBPL8 (ENSEASG00005021942) #25	BBS10 (ENSEASG00005021945) #26	NAP1L1 (ENSEASG00005021946) #27	PHLDA1 (ENSEASG00005027836) #28	KRR1 (ENSEASG00005021952) #29	GLIPR1 (ENSEASG00005024066) #30	GLIPR1L2 (ENSEASG00005021956) #31	GLIPR1L1 (ENSEASG00005032803) #32	CAPS2 (ENSEASG00005021957) #33	KCNC2 (ENSEASG00005021959) #34	ATXN7L3B (ENSEASG00005030269) #35	TRHDE (ENSEASG00005021964) #37	TPH2 (ENSEASG00005021971)
Horse	MODERN SPECIES	20	TSPAN19 (ENSECAG00000037294)	SLC6A15 (ENSECAG00000018897) #7	TMTC2 (ENSECAG00000014638) #8	METTL25 (ENSECAG00000010894) #9	CCDC59 (ENSECAG00000010450) #10	PPFIA2 (ENSECAG00000011682) #11	ACSS3 (ENSECAG00000008242) #12	LIN7A (ENSECAG00000002823) #13	MYF5 (ENSECAG00000020047) #15	PTPRQ (ENSECAG00000013221) #16	OTOGL (ENSECAG00000009954) #17	PPP1R12A (ENSECAG00000020406) #18	PAWR (ENSECAG00000019505) #19	SYT1 (ENSECAG00000012832) #20	NAV3 (ENSECAG00000000121) #21	E2F7 (ENSECAG00000017963) #22	CSRP2 (ENSECAG00000015606) #23	ZDHHC17 (ENSECAG00000006626) #24	ENSECAG00000058140	OSBPL8 (ENSECAG00000015542) #25	BBS10 (ENSECAG00000015525) #26	NAP1L1 (ENSECAG00000000066) #27	ENSECAG00000001900	KRR1 (ENSECAG00000017498) #29	GLIPR1 (ENSECAG00000015687) #30	ENSECAG00000054232	ENSECAG00000053308	ENSECAG00000029754	GLIPR1L2 (ENSECAG00000049297) #31	GLIPR1L1 (ENSECAG00000015592) #32	CAPS2 (ENSECAG00000011231) #33
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00940000167051	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00940000167051	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Greater horseshoe bat	MODERN SPECIES	1	ENSRFEG00010014611	TMTC2 (ENSRFEG00010014525) #8	METTL25 (ENSRFEG00010014462) #9	CCDC59 (ENSRFEG00010014412) #10	PPFIA2 (ENSRFEG00010011014) #11	ACSS3 (ENSRFEG00010010509) #12	LIN7A (ENSRFEG00010010463) #13	MYF5 (ENSRFEG00010010395) #14	MYF6 (ENSRFEG00010010368) #15	PTPRQ (ENSRFEG00010009562) #16	OTOGL (ENSRFEG00010007970) #17	PPP1R12A (ENSRFEG00010007686) #18	PAWR (ENSRFEG00010007574) #19	SYT1 (ENSRFEG00010007403) #20	NAV3 (ENSRFEG00010006668) #21	E2F7 (ENSRFEG00010006442) #22	CSRP2 (ENSRFEG00010006389) #23	ZDHHC17 (ENSRFEG00010006316) #24	OSBPL8 (ENSRFEG00010006253) #25	BBS10 (ENSRFEG00010004681) #26	NAP1L1 (ENSRFEG00010004645) #27	ENSRFEG00010004601	ENSRFEG00010004593 #29	GLIPR1 (ENSRFEG00010004575) #30	GLIPR1L2 (ENSRFEG00010004536) #31	GLIPR1L1 (ENSRFEG00010004502) #32	CAPS2 (ENSRFEG00010004481) #33	KCNC2 (ENSRFEG00010004462) #34	ENSRFEG00010004445	TRHDE (ENSRFEG00010004421) #37	TPH2 (ENSRFEG00010004392)
Microbat	MODERN SPECIES	946	TMTC2 (ENSMLUG00000010233) #8	METTL25 (ENSMLUG00000008084) #9	CCDC59 (ENSMLUG00000008071) #10	PPFIA2 (ENSMLUG00000001537) #11	ACSS3 (ENSMLUG00000001527) #12	LIN7A (ENSMLUG00000001526) #13	MYF5 (ENSMLUG00000004943) #14	MYF6 (ENSMLUG00000004940) #15	PTPRQ (ENSMLUG00000006091) #16	OTOGL (ENSMLUG00000005553) #17	PPP1R12A (ENSMLUG00000005477) #18	ENSMLUG00000005757 #19	SYT1 (ENSMLUG00000005752) #20	ENSMLUG00000027140	NAV3 (ENSMLUG00000010374) #21	E2F7 (ENSMLUG00000012116) #22	CSRP2 (ENSMLUG00000002384) #23	ZDHHC17 (ENSMLUG00000002375) #24	ENSMLUG00000003587	ENSMLUG00000029930	OSBPL8 (ENSMLUG00000005046) #25	BBS10 (ENSMLUG00000001850) #26	NAP1L1 (ENSMLUG00000029307) #27
Megabat	MODERN SPECIES	1983																E2F7 (ENSPVAG00000000288) #22
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Suina	ANCESTRAL SPECIES	4	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Chacoan peccary	MODERN SPECIES	871		TMTC2 (ENSCWAG00000013168) #8	METTL25 (ENSCWAG00000013127) #9	CCDC59 (ENSCWAG00000013098) #10	PPFIA2 (ENSCWAG00000010523) #11	ACSS3 (ENSCWAG00000010300) #12	LIN7A (ENSCWAG00000010238) #13	MYF5 (ENSCWAG00000010199) #14	MYF6 (ENSCWAG00000010168) #15	PTPRQ (ENSCWAG00000009402) #16	OTOGL (ENSCWAG00000007720) #17	PPP1R12A (ENSCWAG00000007564) #18	PAWR (ENSCWAG00000007454) #19	SYT1 (ENSCWAG00000007382) #20	NAV3 (ENSCWAG00000006671) #21	E2F7 (ENSCWAG00000006403) #22	CSRP2 (ENSCWAG00000006361) #23	ZDHHC17 (ENSCWAG00000006304) #24	OSBPL8 (ENSCWAG00000006143) #25	BBS10 (ENSCWAG00000006105) #26	NAP1L1 (ENSCWAG00000005937) #27	PHLDA1 (ENSCWAG00000005900) #28	ENSCWAG00000005880	KRR1 (ENSCWAG00000005721) #29	GLIPR1 (ENSCWAG00000005686) #30	GLIPR1L2 (ENSCWAG00000005529) #31	GLIPR1L1 (ENSCWAG00000005477) #32	CAPS2 (ENSCWAG00000005425) #33	KCNC2 (ENSCWAG00000005315) #34	ATXN7L3B (ENSCWAG00000005294) #35	ENSCWAG00000005273
Pig	MODERN SPECIES	13	PPFIA2 (ENSSSCG00000000940) #11	ACSS3 (ENSSSCG00000000939) #12	LIN7A (ENSSSCG00000040348) #13	ENSSSCG00000042719	MYF5 (ENSSSCG00000000937) #14	MYF6 (ENSSSCG00000026533) #15	PTPRQ (ENSSSCG00000031716) #16	OTOGL (ENSSSCG00000000943) #17	PPP1R12A (ENSSSCG00000038973) #18	PAWR (ENSSSCG00000036560) #19	SYT1 (ENSSSCG00000000948) #20	ENSSSCG00000049637	ENSSSCG00000052129	NAV3 (ENSSSCG00000029249) #21	ENSSSCG00000044299	E2F7 (ENSSSCG00000000950) #22	ENSSSCG00000043521	CSRP2 (ENSSSCG00000000951) #23	ZDHHC17 (ENSSSCG00000000952) #24	ENSSSCG00000025041
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Cetacea	ANCESTRAL SPECIES	8	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000154172.ab.b	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000014572.eb.b	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000154172.ab.b	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000014572.eb.b	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000154172.ab.b	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000014572.eb.b	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000154172.ab.b	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000014572.eb.b	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000154172.ab.b	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00940000154980.bb.a #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000014572.eb.b	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	39			PPFIA2 (ENSDLEG00000005438) #11	ACSS3 (ENSDLEG00000005911) #12	LIN7A (ENSDLEG00000005973) #13	MYF5 (ENSDLEG00000006018) #14	MYF6 (ENSDLEG00000006023) #15	PTPRQ (ENSDLEG00000006066) #16	OTOGL (ENSDLEG00000006234) #17	PPP1R12A (ENSDLEG00000006433) #18	ENSDLEG00000006442	PAWR (ENSDLEG00000006445) #19	ENSDLEG00000006452	SYT1 (ENSDLEG00000006456) #20	NAV3 (ENSDLEG00000006608) #21	ENSDLEG00000007322 #22	ENSDLEG00000007329 #22	CSRP2 (ENSDLEG00000007353) #23	ZDHHC17 (ENSDLEG00000007362) #24	ENSDLEG00000007371	OSBPL8 (ENSDLEG00000007401) #25	BBS10 (ENSDLEG00000007426) #26	ENSDLEG00000007438 #27	PHLDA1 (ENSDLEG00000007521) #28	ENSDLEG00000007528	KRR1 (ENSDLEG00000007544) #29	GLIPR1 (ENSDLEG00000007560) #30	GLIPR1L2 (ENSDLEG00000000224) #31	KCNC2 (ENSDLEG00000000278) #34	ATXN7L3B (ENSDLEG00000000389) #35	ENSDLEG00000000403
Beluga whale	MODERN SPECIES	39		PPFIA2 (ENSDLEG00000005438) #11	ACSS3 (ENSDLEG00000005911) #12	LIN7A (ENSDLEG00000005973) #13	MYF5 (ENSDLEG00000006018) #14	MYF6 (ENSDLEG00000006023) #15	PTPRQ (ENSDLEG00000006066) #16	OTOGL (ENSDLEG00000006234) #17	PPP1R12A (ENSDLEG00000006433) #18	ENSDLEG00000006442	PAWR (ENSDLEG00000006445) #19	ENSDLEG00000006452	SYT1 (ENSDLEG00000006456) #20	NAV3 (ENSDLEG00000006608) #21	ENSDLEG00000007322 #22	ENSDLEG00000007329 #22	CSRP2 (ENSDLEG00000007353) #23	ZDHHC17 (ENSDLEG00000007362) #24	ENSDLEG00000007371	OSBPL8 (ENSDLEG00000007401) #25	BBS10 (ENSDLEG00000007426) #26	ENSDLEG00000007438 #27	PHLDA1 (ENSDLEG00000007521) #28	ENSDLEG00000007528	KRR1 (ENSDLEG00000007544) #29	GLIPR1 (ENSDLEG00000007560) #30	GLIPR1L2 (ENSDLEG00000000224) #31	KCNC2 (ENSDLEG00000000278) #34	ATXN7L3B (ENSDLEG00000000389) #35	ENSDLEG00000000403	TRHDE (ENSDLEG00000000423) #37
Narwhal	MODERN SPECIES	313	CCDC59 (ENSMMNG00015020720) #10	PPFIA2 (ENSMMNG00015020218) #11	ACSS3 (ENSMMNG00015019853) #12	ENSMMNG00015019830	LIN7A (ENSMMNG00015019774) #13	MYF5 (ENSMMNG00015019736) #14	MYF6 (ENSMMNG00015019715) #15	PTPRQ (ENSMMNG00015019359) #16	OTOGL (ENSMMNG00015018567) #17	ENSMMNG00015018420	PPP1R12A (ENSMMNG00015018194) #18	ENSMMNG00015018085	PAWR (ENSMMNG00015018035) #19	SYT1 (ENSMMNG00015017994) #20	NAV3 (ENSMMNG00015017728) #21	E2F7 (ENSMMNG00015017553) #22	CSRP2 (ENSMMNG00015017494) #23	ENSMMNG00015017474	ZDHHC17 (ENSMMNG00015017285) #24	OSBPL8 (ENSMMNG00015017163) #25	BBS10 (ENSMMNG00015017120) #26	NAP1L1 (ENSMMNG00015016626) #27	PHLDA1 (ENSMMNG00015016497) #28	ENSMMNG00015016472	KRR1 (ENSMMNG00015016424) #29	GLIPR1 (ENSMMNG00015016368) #30	GLIPR1L2 (ENSMMNG00015016289) #31	KCNC2 (ENSMMNG00015016164) #34	ATXN7L3B (ENSMMNG00015016119) #35	ENSMMNG00015016102	TRHDE (ENSMMNG00015016061) #37
Vaquita	MODERN SPECIES	1	METTL25 (ENSPSNG00000005420) #9	ENSPSNG00000005450 #10	PPFIA2 (ENSPSNG00000005685) #11	ACSS3 (ENSPSNG00000006403) #12	LIN7A (ENSPSNG00000006484) #13	MYF5 (ENSPSNG00000006510) #14	MYF6 (ENSPSNG00000006531) #15	PTPRQ (ENSPSNG00000006652) #16	OTOGL (ENSPSNG00000007188) #17	PPP1R12A (ENSPSNG00000008207) #18	ENSPSNG00000008403	PAWR (ENSPSNG00000008439) #19	SYT1 (ENSPSNG00000008513) #20	ENSPSNG00000008562	NAV3 (ENSPSNG00000009074) #21	E2F7 (ENSPSNG00000010547) #22	CSRP2 (ENSPSNG00000010823) #23	ZDHHC17 (ENSPSNG00000010872) #24	ENSPSNG00000010920	ENSPSNG00000010941	OSBPL8 (ENSPSNG00000010975) #25	BBS10 (ENSPSNG00000011255) #26	ENSPSNG00000011336 #27	ENSPSNG00000011534	ENSPSNG00000011566	KRR1 (ENSPSNG00000011619) #29	GLIPR1 (ENSPSNG00000011694) #30	ENSPSNG00000011741 #31	ENSPSNG00000011783 #33	KCNC2 (ENSPSNG00000011897) #34	ENSPSNG00000012078
Dolphin	MODERN SPECIES	5125																E2F7 (ENSTTRG00000000110) #22
Sperm whale	MODERN SPECIES	17	ENSPCTG00005020220	METTL25 (ENSPCTG00005020146) #9	CCDC59 (ENSPCTG00005020122) #10	PPFIA2 (ENSPCTG00005017124) #11	ACSS3 (ENSPCTG00005016578) #12	LIN7A (ENSPCTG00005016469) #13	MYF5 (ENSPCTG00005016429) #14	MYF6 (ENSPCTG00005016374) #15	PTPRQ (ENSPCTG00005015293) #16	OTOGL (ENSPCTG00005013033) #17	ENSPCTG00005012953	PPP1R12A (ENSPCTG00005012575) #18	PAWR (ENSPCTG00005012474) #19	SYT1 (ENSPCTG00005012311) #20	NAV3 (ENSPCTG00005010415) #21	E2F7 (ENSPCTG00005009995) #22	CSRP2 (ENSPCTG00005009938) #23	ZDHHC17 (ENSPCTG00005009874) #24	OSBPL8 (ENSPCTG00005009709) #25	BBS10 (ENSPCTG00005009666) #26	ENSPCTG00005009647	ENSPCTG00005009623	NAP1L1 (ENSPCTG00005009406) #27	PHLDA1 (ENSPCTG00005009371) #28	ENSPCTG00005009342	KRR1 (ENSPCTG00005009253) #29	GLIPR1 (ENSPCTG00005009154) #30	GLIPR1L2 (ENSPCTG00005008930) #31	GLIPR1L1 (ENSPCTG00005008822) #32	CAPS2 (ENSPCTG00005008725) #33	KCNC2 (ENSPCTG00005008582) #34
Blue whale	MODERN SPECIES	1	CCDC59 (ENSBMSG00010008631) #10	PPFIA2 (ENSBMSG00010007808) #11	ACSS3 (ENSBMSG00010007621) #12	ENSBMSG00010007609	LIN7A (ENSBMSG00010007592) #13	MYF5 (ENSBMSG00010007571) #14	MYF6 (ENSBMSG00010007564) #15	PTPRQ (ENSBMSG00010007468) #16	OTOGL (ENSBMSG00010021255) #17	ENSBMSG00010021208	PPP1R12A (ENSBMSG00010021198) #18	PAWR (ENSBMSG00010021183) #19	SYT1 (ENSBMSG00010021177) #20	ENSBMSG00010021165	NAV3 (ENSBMSG00010021020) #21	E2F7 (ENSBMSG00010020948) #22	CSRP2 (ENSBMSG00010020929) #23	ZDHHC17 (ENSBMSG00010020913) #24	OSBPL8 (ENSBMSG00010020883) #25	BBS10 (ENSBMSG00010020864) #26	NAP1L1 (ENSBMSG00010020766) #27	PHLDA1 (ENSBMSG00010020734) #28	ENSBMSG00010020727	KRR1 (ENSBMSG00010020702) #29	GLIPR1 (ENSBMSG00010020669) #30	GLIPR1L2 (ENSBMSG00010020577) #31	GLIPR1L1 (ENSBMSG00010020548) #32	CAPS2 (ENSBMSG00010020525) #33	KCNC2 (ENSBMSG00010020489) #34	TRHDE (ENSBMSG00010020456) #37	TPH2 (ENSBMSG00010020429)
Pecora	ANCESTRAL SPECIES	3	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.cb #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Percora_a	ANCESTRAL SPECIES	3	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.cb #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Bovidae	ANCESTRAL SPECIES	3	ENSGT00390000013187.b	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00390000012446.o.b	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.cb.b #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Caprinae	ANCESTRAL SPECIES		ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT00390000013187.b	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a.n #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.cb.b #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Goat	MODERN SPECIES	24	ENSCHIG00000005384	PPFIA2 (ENSCHIG00000022919) #11	ACSS3 (ENSCHIG00000023281) #12	LIN7A (ENSCHIG00000003123) #13	MYF5 (ENSCHIG00000015029) #14	MYF6 (ENSCHIG00000021667) #15	PTPRQ (ENSCHIG00000026657) #16	OTOGL (ENSCHIG00000001357) #17	PPP1R12A (ENSCHIG00000007263) #18	PAWR (ENSCHIG00000014049) #19	SYT1 (ENSCHIG00000027174) #20	ENSCHIG00000020619	NAV3 (ENSCHIG00000012255) #21	ENSCHIG00000009714	ENSCHIG00000017418	E2F7 (ENSCHIG00000023455) #22	CSRP2 (ENSCHIG00000025767) #23	ZDHHC17 (ENSCHIG00000009471) #24	OSBPL8 (ENSCHIG00000010416) #25	BBS10 (ENSCHIG00000016567) #26	PHLDA1 (ENSCHIG00000005054) #28	KRR1 (ENSCHIG00000018496) #29	GLIPR1 (ENSCHIG00000024224) #30	ENSCHIG00000010162 #31	ENSCHIG00000017904 #32	CAPS2 (ENSCHIG00000023572) #33	ENSCHIG00000011941 #34	ENSCHIG00000018503 #34	ATXN7L3B (ENSCHIG00000009745) #35	ENSCHIG00000009502	ENSCHIG00000012666
Rambouillet Sheep	MODERN SPECIES	19	TSPAN19 (ENSOARG00020007275)	SLC6A15 (ENSOARG00020007201) #7	TMTC2 (ENSOARG00020015711) #8	CCDC59 (ENSOARG00020015621) #10	PPFIA2 (ENSOARG00020009934) #11	ACSS3 (ENSOARG00020009124) #12	LIN7A (ENSOARG00020009053) #13	MYF5 (ENSOARG00020009026) #14	MYF6 (ENSOARG00020008989) #15	MYF6 (ENSOARG00020008943) #15	PTPRQ (ENSOARG00020008080) #16	PPP1R12A (ENSOARG00020005817) #18	PAWR (ENSOARG00020005665) #19	SYT1 (ENSOARG00020005626) #20	NAV3 (ENSOARG00020003813) #21	E2F7 (ENSOARG00020003529) #22	CSRP2 (ENSOARG00020003468) #23	ZDHHC17 (ENSOARG00020003403) #24	ENSOARG00020003381	BBS10 (ENSOARG00020003354) #26	OSBPL8 (ENSOARG00020003030) #25	ENSOARG00020002933 #27	PHLDA1 (ENSOARG00020002913) #28	KRR1 (ENSOARG00020002893) #29	GLIPR1 (ENSOARG00020002870) #30	ENSOARG00020002828	GLIPR1L1 (ENSOARG00020002811) #32	CAPS2 (ENSOARG00020002788) #33	KCNC2 (ENSOARG00020002747) #34	ATXN7L3B (ENSOARG00020002735) #35	ENSOARG00020002731
Bovinae	ANCESTRAL SPECIES	17	ENSGT00390000013187.b	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00390000012446.o.b	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.cb.b.b #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Bos	ANCESTRAL SPECIES	2	ENSGT00390000003710.c.a.b.b	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00390000012446.o.b	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.cb.b.b #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Bos_b	ANCESTRAL SPECIES	4	ENSGT00390000013187.b	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT01030000234758.a.a.b.a.a.b.b.a.a	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000263748	ENSGT00940000158014 #21	ENSGT00390000012446.o.b	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.cb.b.b.f.b #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Hybrid Bos Indicus	MODERN SPECIES	24	ENSBIXG00005009217	ACSS3 (ENSBIXG00005009198) #12	ENSBIXG00005009169	LIN7A (ENSBIXG00005009155) #13	MYF5 (ENSBIXG00005009143) #14	MYF6 (ENSBIXG00005009131) #15	PTPRQ (ENSBIXG00005009087) #16	OTOGL (ENSBIXG00005008900) #17	PPP1R12A (ENSBIXG00005000226) #18	ENSBIXG00005000182	PAWR (ENSBIXG00005000179) #19	SYT1 (ENSBIXG00005008356) #20	ENSBIXG00005008283	NAV3 (ENSBIXG00005000135) #21	ENSBIXG00005008045	E2F7 (ENSBIXG00005008016) #22	CSRP2 (ENSBIXG00005007979) #23	ZDHHC17 (ENSBIXG00005000041) #24	OSBPL8 (ENSBIXG00005007884) #25	ENSBIXG00005029293	BBS10 (ENSBIXG00005029298) #26	ENSBIXG00005029325 #27	PHLDA1 (ENSBIXG00005029359) #28	ENSBIXG00005029389	KRR1 (ENSBIXG00005029408) #29	GLIPR1 (ENSBIXG00005029431) #30	ENSBIXG00005029442 #31	GLIPR1L1 (ENSBIXG00005029466) #32	CAPS2 (ENSBIXG00005029482) #33	KCNC2 (ENSBIXG00005029515) #34	ENSBIXG00005029561
Cow	MODERN SPECIES	24	ENSBTAG00000053526	PPFIA2 (ENSBTAG00000003036) #11	ACSS3 (ENSBTAG00000018694) #12	LIN7A (ENSBTAG00000011367) #13	MYF5 (ENSBTAG00000026972) #14	MYF6 (ENSBTAG00000014003) #15	PTPRQ (ENSBTAG00000026977) #16	OTOGL (ENSBTAG00000011336) #17	PPP1R12A (ENSBTAG00000014609) #18	ENSBTAG00000048833	PAWR (ENSBTAG00000043949) #19	SYT1 (ENSBTAG00000034693) #20	ENSBTAG00000054695	NAV3 (ENSBTAG00000009852) #21	ENSBTAG00000054109	E2F7 (ENSBTAG00000016931) #22	CSRP2 (ENSBTAG00000013406) #23	ZDHHC17 (ENSBTAG00000021756) #24	OSBPL8 (ENSBTAG00000004427) #25	BBS10 (ENSBTAG00000050467) #26	PHLDA1 (ENSBTAG00000034985) #28	KRR1 (ENSBTAG00000011591) #29	GLIPR1 (ENSBTAG00000011590) #30	GLIPR1L2 (ENSBTAG00000019260) #31	GLIPR1L1 (ENSBTAG00000004569) #32	CAPS2 (ENSBTAG00000014859) #33	ENSBTAG00000054123 #34	ATXN7L3B (ENSBTAG00000035083) #35	TRHDE (ENSBTAG00000018575) #37	TPH2 (ENSBTAG00000020792)	TBC1D15 (ENSBTAG00000012828)
Bos_a	ANCESTRAL SPECIES	3	ENSGT00390000013187.b	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.a.b.a.a.a	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000168324	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00390000012446.o.b	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.cb.b.b #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Wild yak	MODERN SPECIES	581																E2F7 (ENSBMUG00000000593) #22	CSRP2 (ENSBMUG00000000626) #23	ZDHHC17 (ENSBMUG00000000646) #24
Domestic yak	MODERN SPECIES	24	ENSBGRG00000003736	MYF5 (ENSBGRG00000003759) #14	MYF6 (ENSBGRG00000003786) #15	PTPRQ (ENSBGRG00000003831) #16	ENSBGRG00000005290	OTOGL (ENSBGRG00000005461) #17	PPP1R12A (ENSBGRG00000006560) #18	ENSBGRG00000007448	PAWR (ENSBGRG00000007479) #19	ENSBGRG00000007603	SYT1 (ENSBGRG00000007621) #20	NAV3 (ENSBGRG00000007767) #21	ENSBGRG00000009036	ENSBGRG00000009079	ENSBGRG00000009095	E2F7 (ENSBGRG00000009145) #22	ENSBGRG00000009376 #23	ZDHHC17 (ENSBGRG00000009471) #24	ENSBGRG00000009858	OSBPL8 (ENSBGRG00000009892) #25	BBS10 (ENSBGRG00000010078) #26	ENSBGRG00000010174 #27	PHLDA1 (ENSBGRG00000010374) #28	ENSBGRG00000010394	KRR1 (ENSBGRG00000010440) #29	GLIPR1 (ENSBGRG00000010721) #30	GLIPR1L2 (ENSBGRG00000010806) #31	ENSBGRG00000011010 #32	CAPS2 (ENSBGRG00000011068) #33	KCNC2 (ENSBGRG00000011149) #34	ENSBGRG00000011407
American bison	MODERN SPECIES	2940														ENSBBBG00000021397	NAV3 (ENSBBBG00000021636) #21	E2F7 (ENSBBBG00000021699) #22	CSRP2 (ENSBBBG00000021745) #23	ZDHHC17 (ENSBBBG00000007523) #24	OSBPL8 (ENSBBBG00000021874) #25	BBS10 (ENSBBBG00000021881) #26	NAP1L1 (ENSBBBG00000022264) #27	PHLDA1 (ENSBBBG00000022301) #28
Siberian musk deer	MODERN SPECIES	161															ENSMMSG00000008018	E2F7 (ENSMMSG00000007800) #22	ENSMMSG00000007753 #23	ZDHHC17 (ENSMMSG00000007709) #24	OSBPL8 (ENSMMSG00000007416) #25	ENSMMSG00000007025 #27	PHLDA1 (ENSMMSG00000006968) #28	ENSMMSG00000006950	KRR1 (ENSMMSG00000006803) #29	GLIPR1 (ENSMMSG00000006761) #30	GLIPR1L2 (ENSMMSG00000006598) #31	GLIPR1L1 (ENSMMSG00000006495) #32	CAPS2 (ENSMMSG00000006455) #33	KCNC2 (ENSMMSG00000006316) #34	ATXN7L3B (ENSMMSG00000006291) #35	ENSMMSG00000006282
Yarkand deer	MODERN SPECIES	22	ENSCHYG00000021532	PPFIA2 (ENSCHYG00000018601) #11	ACSS3 (ENSCHYG00000018161) #12	LIN7A (ENSCHYG00000018063) #13	MYF5 (ENSCHYG00000018006) #14	MYF6 (ENSCHYG00000017934) #15	PTPRQ (ENSCHYG00000015685) #16	OTOGL (ENSCHYG00000013254) #17	PPP1R12A (ENSCHYG00000011940) #18	ENSCHYG00000011841	PAWR (ENSCHYG00000011616) #19	SYT1 (ENSCHYG00000011518) #20	ENSCHYG00000011512	NAV3 (ENSCHYG00000010069) #21	ENSCHYG00000009932	E2F7 (ENSCHYG00000009596) #22	ENSCHYG00000009520	CSRP2 (ENSCHYG00000009422) #23	ZDHHC17 (ENSCHYG00000009052) #24	OSBPL8 (ENSCHYG00000008637) #25	ENSCHYG00000008327 #27	PHLDA1 (ENSCHYG00000008287) #28	KRR1 (ENSCHYG00000008210) #29	GLIPR1 (ENSCHYG00000008170) #30	GLIPR1L2 (ENSCHYG00000008064) #31	GLIPR1L1 (ENSCHYG00000008035) #32	CAPS2 (ENSCHYG00000007943) #33	KCNC2 (ENSCHYG00000007653) #34	ATXN7L3B (ENSCHYG00000007602) #35	ENSCHYG00000007590	TRHDE (ENSCHYG00000007528) #37
Camelidae	ANCESTRAL SPECIES	39	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980.cb #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00910000147024	ENSGT00940000162576 #35	ENSGT00940000155878 #37
Alpaca	MODERN SPECIES	1665																E2F7 (ENSVPAG00000011151) #22
Arabian camel	MODERN SPECIES	3	SLC6A15 (ENSCDRG00005005426) #7	TMTC2 (ENSCDRG00005005499) #8	METTL25 (ENSCDRG00005005578) #9	CCDC59 (ENSCDRG00005005635) #10	PPFIA2 (ENSCDRG00005005786) #11	ACSS3 (ENSCDRG00005008842) #12	LIN7A (ENSCDRG00005009181) #13	MYF5 (ENSCDRG00005009235) #14	MYF6 (ENSCDRG00005009281) #15	PTPRQ (ENSCDRG00005009356) #16	OTOGL (ENSCDRG00005010509) #17	PPP1R12A (ENSCDRG00005012542) #18	PAWR (ENSCDRG00005014596) #19	SYT1 (ENSCDRG00005014660) #20	NAV3 (ENSCDRG00005014880) #21	E2F7 (ENSCDRG00005015968) #22	CSRP2 (ENSCDRG00005016043) #23	ZDHHC17 (ENSCDRG00005016120) #24	OSBPL8 (ENSCDRG00005016392) #25	BBS10 (ENSCDRG00005016659) #26	NAP1L1 (ENSCDRG00005016698) #27	PHLDA1 (ENSCDRG00005016995) #28	ENSCDRG00005017029 #29	ENSCDRG00005017128 #30	ENSCDRG00005017149 #31	ENSCDRG00005017179	GLIPR1L1 (ENSCDRG00005017244) #32	CAPS2 (ENSCDRG00005017344) #33	KCNC2 (ENSCDRG00005017383) #34	ENSCDRG00005017473	ATXN7L3B (ENSCDRG00005017489) #35
Atlantogenata	ANCESTRAL SPECIES	16	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Afrotheria	ANCESTRAL SPECIES	8	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
Tenrec	MODERN SPECIES	5837																E2F7 (ENSETEG00000014750) #22
Afrotheria_a	ANCESTRAL SPECIES	8	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000162576 #35	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
Hyrax	MODERN SPECIES	4937																E2F7 (ENSPCAG00000000596) #22
Elephant	MODERN SPECIES	196	ENSLAFG00000029547	TMTC2 (ENSLAFG00000018670) #8	METTL25 (ENSLAFG00000015370) #9	CCDC59 (ENSLAFG00000015368) #10	PPFIA2 (ENSLAFG00000011055) #11	ACSS3 (ENSLAFG00000011051) #12	LIN7A (ENSLAFG00000014801) #13	MYF5 (ENSLAFG00000016473) #14	MYF6 (ENSLAFG00000016476) #15	PTPRQ (ENSLAFG00000009382) #16	ENSLAFG00000016020 #17	PPP1R12A (ENSLAFG00000014619) #18	ENSLAFG00000007186 #19	SYT1 (ENSLAFG00000013359) #20	NAV3 (ENSLAFG00000001793) #21	E2F7 (ENSLAFG00000017902) #22	ENSLAFG00000028909	CSRP2 (ENSLAFG00000006735) #23	ZDHHC17 (ENSLAFG00000006732) #24	OSBPL8 (ENSLAFG00000009398) #25	BBS10 (ENSLAFG00000009397) #26	NAP1L1 (ENSLAFG00000005711) #27	ENSLAFG00000008030 #28	KRR1 (ENSLAFG00000015986) #29	GLIPR1 (ENSLAFG00000031551) #30	GLIPR1L2 (ENSLAFG00000006750) #31	CAPS2 (ENSLAFG00000006745) #33	KCNC2 (ENSLAFG00000031982) #34	ATXN7L3B (ENSLAFG00000029803) #35	TRHDE (ENSLAFG00000000333) #37	ENSLAFG00000026873
Xenarthra	ANCESTRAL SPECIES	268														ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357 #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33
Sloth	MODERN SPECIES	5359																E2F7 (ENSCHOG00000004785) #22
Armadillo	MODERN SPECIES	3011									ENSDNOG00000041480	ENSDNOG00000015540 #19	ENSDNOG00000031221	SYT1 (ENSDNOG00000032547) #20	NAV3 (ENSDNOG00000005668) #21	ENSDNOG00000042472	ENSDNOG00000048320	E2F7 (ENSDNOG00000001580) #22	ENSDNOG00000008785 #23	ZDHHC17 (ENSDNOG00000014749) #24	OSBPL8 (ENSDNOG00000047010) #25	BBS10 (ENSDNOG00000042628) #26	NAP1L1 (ENSDNOG00000010126) #27	PHLDA1 (ENSDNOG00000018745) #28	KRR1 (ENSDNOG00000015614) #29	GLIPR1 (ENSDNOG00000043370) #30	GLIPR1L2 (ENSDNOG00000018693) #31	ENSDNOG00000031956 #32	CAPS2 (ENSDNOG00000009684) #33
Marsupialia	ANCESTRAL SPECIES	11	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.k #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357.b #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
Marsupialia_b	ANCESTRAL SPECIES	13	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.k #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357.b #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
Diprotodontia	ANCESTRAL SPECIES	8	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.k #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357.b #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
Diprotodontia_a	ANCESTRAL SPECIES	8	ENSGT00940000157277 #7	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.k #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000162357.b #31	ENSGT00940000162547 #32	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
koala	MODERN SPECIES	51	TMTC2 (ENSPCIG00000032378) #8	METTL25 (ENSPCIG00000007809) #9	CCDC59 (ENSPCIG00000007808) #10	PPFIA2 (ENSPCIG00000024777) #11	ACSS3 (ENSPCIG00000035215) #12	LIN7A (ENSPCIG00000029151) #13	MYF5 (ENSPCIG00000029150) #14	MYF6 (ENSPCIG00000029149) #15	PTPRQ (ENSPCIG00000029148) #16	OTOGL (ENSPCIG00000026368) #17	PPP1R12A (ENSPCIG00000026366) #18	PAWR (ENSPCIG00000026365) #19	SYT1 (ENSPCIG00000032719) #20	ENSPCIG00000026362	NAV3 (ENSPCIG00000025666) #21	E2F7 (ENSPCIG00000025823) #22	CSRP2 (ENSPCIG00000005894) #23	ZDHHC17 (ENSPCIG00000005890) #24
Common wonbat	MODERN SPECIES	1095	ACSS3 (ENSVURG00010000986) #12	LIN7A (ENSVURG00010001078) #13	MYF5 (ENSVURG00010001088) #14	MYF6 (ENSVURG00010001122) #15	PTPRQ (ENSVURG00010001162) #16	OTOGL (ENSVURG00010001281) #17	PPP1R12A (ENSVURG00010001421) #18	PAWR (ENSVURG00010001479) #19	SYT1 (ENSVURG00010001565) #20	ENSVURG00010001581	ENSVURG00010001638	NAV3 (ENSVURG00010001745) #21	ENSVURG00010001934	ENSVURG00010001942	ENSVURG00010001969	E2F7 (ENSVURG00010001992) #22	CSRP2 (ENSVURG00010002008) #23	ZDHHC17 (ENSVURG00010002037) #24	OSBPL8 (ENSVURG00010002089) #25	ENSVURG00010002140 #26	ENSVURG00010002166 #27	ENSVURG00010002181 #28
Wallaby	MODERN SPECIES	7268																E2F7 (ENSMEUG00000008461) #22
Tasmanian devil	MODERN SPECIES	4	METTL25 (ENSSHAG00000007147) #9	CCDC59 (ENSSHAG00000031706) #10	ENSSHAG00000032226	PPFIA2 (ENSSHAG00000007734) #11	ACSS3 (ENSSHAG00000005298) #12	ENSSHAG00000025569	LIN7A (ENSSHAG00000029974) #13	MYF5 (ENSSHAG00000013391) #14	MYF6 (ENSSHAG00000013331) #15	PTPRQ (ENSSHAG00000022062) #16	OTOGL (ENSSHAG00000010191) #17	PPP1R12A (ENSSHAG00000005280) #18	ENSSHAG00000022708 #19	SYT1 (ENSSHAG00000009436) #20	NAV3 (ENSSHAG00000001971) #21	E2F7 (ENSSHAG00000002919) #22	CSRP2 (ENSSHAG00000005571) #23	ZDHHC17 (ENSSHAG00000022371) #24	OSBPL8 (ENSSHAG00000023268) #25	BBS10 (ENSSHAG00000001800) #26	NAP1L1 (ENSSHAG00000002304) #27	ENSSHAG00000031318 #28	KRR1 (ENSSHAG00000001646) #29	ENSSHAG00000000387 #31	ENSSHAG00000003351 #31	ENSSHAG00000022579 #33	ENSSHAG00000003523 #34	ENSSHAG00000001350	ENSSHAG00000024905	ENSSHAG00000032196	ENSSHAG00000023271 #37
Opossum	MODERN SPECIES	7	METTL25 (ENSMODG00000020485) #9	ENSMODG00000020484 #10	ENSMODG00000020481 #11	ACSS3 (ENSMODG00000020480) #12	ENSMODG00000037278	LIN7A (ENSMODG00000020479) #13	MYF5 (ENSMODG00000020478) #14	MYF6 (ENSMODG00000039074) #15	PTPRQ (ENSMODG00000020476) #16	OTOGL (ENSMODG00000020473) #17	ENSMODG00000025012	PPP1R12A (ENSMODG00000020471) #18	PAWR (ENSMODG00000020468) #19	SYT1 (ENSMODG00000020467) #20	NAV3 (ENSMODG00000020466) #21	E2F7 (ENSMODG00000020465) #22	ENSMODG00000020464 #23	ENSMODG00000048422 #24	OSBPL8 (ENSMODG00000020459) #25	ENSMODG00000020458 #26	ENSMODG00000020456 #27	ENSMODG00000044376 #28	KRR1 (ENSMODG00000020451) #29	GLIPR1 (ENSMODG00000020450) #30	ENSMODG00000037882	ENSMODG00000025130 #30	ENSMODG00000043532 #31	ENSMODG00000020442 #33	ENSMODG00000020440 #34	TRHDE (ENSMODG00000020425) #37	TBC1D15 (ENSMODG00000020417)
Platypus	MODERN SPECIES	5	SLC6A15 (ENSOANG00000006324) #7	TMTC2 (ENSOANG00000015210) #8	ENSOANG00000004849 #9	ENSOANG00000042867 #10	PPFIA2 (ENSOANG00000004850) #11	ACSS3 (ENSOANG00000004851) #12	ENSOANG00000041857 #13	MYF5 (ENSOANG00000004853) #14	MYF6 (ENSOANG00000004854) #15	PTPRQ (ENSOANG00000004855) #16	OTOGL (ENSOANG00000004859) #17	PPP1R12A (ENSOANG00000001685) #18	PAWR (ENSOANG00000043356) #19	SYT1 (ENSOANG00000007531) #20	NAV3 (ENSOANG00000007451) #21	E2F7 (ENSOANG00000007450) #22	CSRP2 (ENSOANG00000007447) #23	ZDHHC17 (ENSOANG00000047613) #24	OSBPL8 (ENSOANG00000011301) #25	ENSOANG00000037830 #26	ENSOANG00000004688	ENSOANG00000047378 #28	KRR1 (ENSOANG00000014451) #29	ENSOANG00000012140 #30	ENSOANG00000022184 #31	CAPS2 (ENSOANG00000029950) #33	ENSOANG00000000183	TRHDE (ENSOANG00000012281) #37	ENSOANG00000040551	TPH2 (ENSOANG00000012279)	TBC1D15 (ENSOANG00000014716)
Sauria	ANCESTRAL SPECIES	4	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Lepidosauria	ANCESTRAL SPECIES	3	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000171110	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Episquamata	ANCESTRAL SPECIES	3	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000166459.B	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
Laterata	ANCESTRAL SPECIES	6	ENSGT00390000006546 #10	ENSGT01040000241648	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000166459.B.e	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429	ENSGT00940000156786
Common wall lizard	MODERN SPECIES	1	ENSPMRG00000021433	PPFIA2 (ENSPMRG00000019499) #11	ACSS3 (ENSPMRG00000019167) #12	LIN7A (ENSPMRG00000019147) #13	MYF5 (ENSPMRG00000019143) #14	MYF6 (ENSPMRG00000019140) #15	PTPRQ (ENSPMRG00000019053) #16	ENSPMRG00000019031	OTOGL (ENSPMRG00000018808) #17	ENSPMRG00000018768	ENSPMRG00000018764	PPP1R12A (ENSPMRG00000018742) #18	PAWR (ENSPMRG00000018731) #19	SYT1 (ENSPMRG00000018726) #20	NAV3 (ENSPMRG00000018638) #21	E2F7 (ENSPMRG00000018546) #22	CSRP2 (ENSPMRG00000018535) #23	ENSPMRG00000018530	ZDHHC17 (ENSPMRG00000018520) #24	OSBPL8 (ENSPMRG00000018504) #25	NAP1L1 (ENSPMRG00000018484) #27	PHLDA1 (ENSPMRG00000018474) #28	KRR1 (ENSPMRG00000018460) #29	ENSPMRG00000018446	ENSPMRG00000018434	ENSPMRG00000018418	ENSPMRG00000018408	ENSPMRG00000018404	CAPS2 (ENSPMRG00000018391) #33	KCNC2 (ENSPMRG00000018386) #34	ENSPMRG00000018381
Argentine black and white tegu	MODERN SPECIES	6	ENSSMRG00000010304	PPFIA2 (ENSSMRG00000010302) #11	ACSS3 (ENSSMRG00000010292) #12	LIN7A (ENSSMRG00000010290) #13	MYF5 (ENSSMRG00000010286) #14	MYF6 (ENSSMRG00000010285) #15	PTPRQ (ENSSMRG00000010276) #16	ENSSMRG00000010275	ENSSMRG00000010274	OTOGL (ENSSMRG00000010267) #17	RPS16 (ENSSMRG00000010263)	PPP1R12A (ENSSMRG00000010257) #18	PAWR (ENSSMRG00000010238) #19	SYT1 (ENSSMRG00000010234) #20	NAV3 (ENSSMRG00000002199) #21	E2F7 (ENSSMRG00000002156) #22	CSRP2 (ENSSMRG00000002146) #23	ZDHHC17 (ENSSMRG00000002140) #24	OSBPL8 (ENSSMRG00000002083) #25	NAP1L1 (ENSSMRG00000001927) #27	PHLDA1 (ENSSMRG00000001842) #28	KRR1 (ENSSMRG00000001818) #29	ENSSMRG00000001816	ENSSMRG00000001811	ENSSMRG00000001806	CAPS2 (ENSSMRG00000001794) #33	KCNC2 (ENSSMRG00000001695) #34
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000166459.B	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
Elapidae	ANCESTRAL SPECIES	6	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b.f.a #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A.b	ENSGT00940000166459.B	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429	ENSGT00940000156786
Elapidae_a	ANCESTRAL SPECIES	1	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b.f.a #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A.a	ENSGT00940000166459.A.b	ENSGT00940000166459.B	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b.f.a #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A.b	ENSGT00940000166459.B	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
Mainland tiger snake	MODERN SPECIES	20	PPFIA2 (ENSNSUG00000000679) #11	ACSS3 (ENSNSUG00000000722) #12	LIN7A (ENSNSUG00000000879) #13	MYF5 (ENSNSUG00000000881) #14	MYF6 (ENSNSUG00000000885) #15	PTPRQ (ENSNSUG00000000888) #16	ENSNSUG00000000905	OTOGL (ENSNSUG00000000909) #17	ENSNSUG00000000966	ENSNSUG00000000970	PPP1R12A (ENSNSUG00000000977) #18	PAWR (ENSNSUG00000001717) #19	SYT1 (ENSNSUG00000001720) #20	NAV3 (ENSNSUG00000001737) #21	ENSNSUG00000001751	E2F7 (ENSNSUG00000001756) #22	CSRP2 (ENSNSUG00000001781) #23	ZDHHC17 (ENSNSUG00000001783) #24	ENSNSUG00000001793	NAP1L1 (ENSNSUG00000001802) #27	PHLDA1 (ENSNSUG00000002091) #28	KRR1 (ENSNSUG00000002095) #29	ENSNSUG00000002098	ENSNSUG00000002101	ENSNSUG00000002104	ENSNSUG00000002108 #33	KCNC2 (ENSNSUG00000002111) #34	TRHDE (ENSNSUG00000002194) #37	ENSNSUG00000002197	TPH2 (ENSNSUG00000002199)	TBC1D15 (ENSNSUG00000002205)
Eastern brown snake	MODERN SPECIES		METTL25 (ENSPTXG00000007317) #9	CCDC59 (ENSPTXG00000007319) #10	PPFIA2 (ENSPTXG00000007321) #11	ACSS3 (ENSPTXG00000007330) #12	LIN7A (ENSPTXG00000007335) #13	MYF5 (ENSPTXG00000007338) #14	MYF6 (ENSPTXG00000007339) #15	PTPRQ (ENSPTXG00000007341) #16	ENSPTXG00000007343	OTOGL (ENSPTXG00000007346) #17	RPS16 (ENSPTXG00000007353)	PPP1R12A (ENSPTXG00000007355) #18	PAWR (ENSPTXG00000007356) #19	SYT1 (ENSPTXG00000007357) #20	NAV3 (ENSPTXG00000007360) #21	E2F7 (ENSPTXG00000007372) #22	CSRP2 (ENSPTXG00000007374) #23	ZDHHC17 (ENSPTXG00000007375) #24	OSBPL8 (ENSPTXG00000007376) #25	ENSPTXG00000007380	NAP1L1 (ENSPTXG00000007381) #27	PHLDA1 (ENSPTXG00000007382) #28	KRR1 (ENSPTXG00000007383) #29	ENSPTXG00000007385	ENSPTXG00000007387	ENSPTXG00000007389	CAPS2 (ENSPTXG00000007392) #33	TRHDE (ENSPTXG00000007394) #37	ENSPTXG00000007395	RAB21 (ENSPTXG00000007396)	TMEM19 (ENSPTXG00000007397)
Blue-lipped sea krait	MODERN SPECIES	8564																E2F7 (ENSLLTG00000011861) #22
Indian cobra	MODERN SPECIES	6	METTL25 (ENSNNAG00000012065) #9	CCDC59 (ENSNNAG00000012004) #10	PPFIA2 (ENSNNAG00000011658) #11	ACSS3 (ENSNNAG00000011558) #12	LIN7A (ENSNNAG00000011463) #13	MYF5 (ENSNNAG00000011436) #14	MYF6 (ENSNNAG00000011423) #15	PTPRQ (ENSNNAG00000011257) #16	ENSNNAG00000011195	OTOGL (ENSNNAG00000010528) #17	RPS16 (ENSNNAG00000010459)	PPP1R12A (ENSNNAG00000007491) #18	PAWR (ENSNNAG00000007341) #19	SYT1 (ENSNNAG00000007300) #20	NAV3 (ENSNNAG00000007065) #21	E2F7 (ENSNNAG00000006676) #22	CSRP2 (ENSNNAG00000006626) #23	ZDHHC17 (ENSNNAG00000006609) #24	OSBPL8 (ENSNNAG00000006212) #25	NAP1L1 (ENSNNAG00000006156) #27	PHLDA1 (ENSNNAG00000006109) #28	ENSNNAG00000006093	ENSNNAG00000006071	KRR1 (ENSNNAG00000005951) #29	ENSNNAG00000005878	ENSNNAG00000005851	CAPS2 (ENSNNAG00000005778) #33	KCNC2 (ENSNNAG00000005744) #34	TRHDE (ENSNNAG00000005672) #37	TPH2 (ENSNNAG00000005600)	TBC1D15 (ENSNNAG00000005508)
Lizard	MODERN SPECIES	4	LIN54 (ENSACAG00000010548)	ENSACAG00000037629	ENSACAG00000037011	SEC31A (ENSACAG00000010481)	ENSACAG00000041939	TMEM150C (ENSACAG00000043889)	ENOPH1 (ENSACAG00000010419)	HNRNPDL (ENSACAG00000010416)	HNRNPD (ENSACAG00000010342)	ENSACAG00000041319	RASGEF1B (ENSACAG00000010279)	PRKG2 (ENSACAG00000010172)	ENSACAG00000010162	NAV3 (ENSACAG00000014617) #21	ENSACAG00000036618	E2F7 (ENSACAG00000005414) #22	ZDHHC17 (ENSACAG00000006696) #24	CSRP2 (ENSACAG00000037715) #23	ENSACAG00000038391	OSBPL8 (ENSACAG00000006790) #25	PHLDA1 (ENSACAG00000037036) #28	NAP1L1 (ENSACAG00000006924) #27	KRR1 (ENSACAG00000007788) #29	ENSACAG00000007763	ENSACAG00000007749	ENSACAG00000041706	ENSACAG00000007743	ENSACAG00000029585	ENSACAG00000040000	ENSACAG00000029340	CAPS2 (ENSACAG00000007716) #33
tuatara	MODERN SPECIES	1779				PPFIA2 (ENSSPUG00000006051) #11	ACSS3 (ENSSPUG00000006460) #12	ENSSPUG00000006572 #13	ENSSPUG00000006578 #13	MYF6 (ENSSPUG00000006611) #15	PTPRQ (ENSSPUG00000006635) #16	OTOGL (ENSSPUG00000006721) #17	RPS16 (ENSSPUG00000006832)	PPP1R12A (ENSSPUG00000006848) #18	PAWR (ENSSPUG00000006881) #19	SYT1 (ENSSPUG00000006892) #20	NAV3 (ENSSPUG00000006945) #21	E2F7 (ENSSPUG00000007017) #22	CSRP2 (ENSSPUG00000007078) #23	ZDHHC17 (ENSSPUG00000007115) #24	OSBPL8 (ENSSPUG00000007161) #25	BBS10 (ENSSPUG00000007433) #26	NAP1L1 (ENSSPUG00000007452) #27	PHLDA1 (ENSSPUG00000007502) #28	ENSSPUG00000007507	KRR1 (ENSSPUG00000007513) #29	ENSSPUG00000007522	ENSSPUG00000007528	ENSSPUG00000007534	CAPS2 (ENSSPUG00000007542) #33
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37
Archosauria	ANCESTRAL SPECIES	4	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37
Aves	ANCESTRAL SPECIES	1	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37
Neognathae	ANCESTRAL SPECIES	3	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37
Neognathae_c	ANCESTRAL SPECIES		ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00960000190133	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37
Golden eagle	MODERN SPECIES	18	CCDC59 (ENSACCG00020010109) #10	ENSACCG00020010123	PPFIA2 (ENSACCG00020010168) #11	ACSS3 (ENSACCG00020010468) #12	LIN7A (ENSACCG00020010701) #13	MYF5 (ENSACCG00020010710) #14	MYF6 (ENSACCG00020010717) #15	PTPRQ (ENSACCG00020010748) #16	ENSACCG00020010786	OTOGL (ENSACCG00020010835) #17	RPS16 (ENSACCG00020010874)	PPP1R12A (ENSACCG00020010939) #18	PAWR (ENSACCG00020011015) #19	SYT1 (ENSACCG00020011033) #20	NAV3 (ENSACCG00020011091) #21	E2F7 (ENSACCG00020011147) #22	CSRP2 (ENSACCG00020011176) #23	ZDHHC17 (ENSACCG00020011189) #24	OSBPL8 (ENSACCG00020011213) #25	BBS10 (ENSACCG00020011231) #26	NAP1L1 (ENSACCG00020011243) #27	PHLDA1 (ENSACCG00020011262) #28	KRR1 (ENSACCG00020011277) #29	ENSACCG00020011291	ENSACCG00020011297	ENSACCG00020011312	ENSACCG00020011320	ENSACCG00020011333 #33	KCNC2 (ENSACCG00020011347) #34	TRHDE (ENSACCG00020011378) #37	TPH2 (ENSACCG00020011409)
Kakapo	MODERN SPECIES	20	CCDC59 (ENSSHBG00005005147) #10	PPFIA2 (ENSSHBG00005005123) #11	ACSS3 (ENSSHBG00005005107) #12	LIN7A (ENSSHBG00005005088) #13	MYF5 (ENSSHBG00005005076) #14	MYF6 (ENSSHBG00005005072) #15	PTPRQ (ENSSHBG00005005034) #16	ENSSHBG00005004998	OTOGL (ENSSHBG00005004951) #17	RPS16 (ENSSHBG00005004902)	PPP1R12A (ENSSHBG00005004881) #18	PAWR (ENSSHBG00005004872) #19	SYT1 (ENSSHBG00005004867) #20	ENSSHBG00005004847	NAV3 (ENSSHBG00005004247) #21	E2F7 (ENSSHBG00005003861) #22	CSRP2 (ENSSHBG00005003817) #23	ZDHHC17 (ENSSHBG00005003761) #24	OSBPL8 (ENSSHBG00005003509) #25	ENSSHBG00005003428	BBS10 (ENSSHBG00005003419) #26	NAP1L1 (ENSSHBG00005003406) #27	PHLDA1 (ENSSHBG00005003397) #28	KRR1 (ENSSHBG00005003376) #29	ENSSHBG00005003356	ENSSHBG00005003343	ENSSHBG00005003325	ENSSHBG00005003305	CAPS2 (ENSSHBG00005003291) #33	KCNC2 (ENSSHBG00005003258) #34	TRHDE (ENSSHBG00005003220) #37
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
Great tit	MODERN SPECIES	10	CCDC59 (ENSPMJG00000012676) #10	PPFIA2 (ENSPMJG00000012675) #11	ACSS3 (ENSPMJG00000012674) #12	LIN7A (ENSPMJG00000012673) #13	MYF5 (ENSPMJG00000012672) #14	MYF6 (ENSPMJG00000012671) #15	PTPRQ (ENSPMJG00000012670) #16	ENSPMJG00000012669	OTOGL (ENSPMJG00000012668) #17	RPS16 (ENSPMJG00000012667)	PPP1R12A (ENSPMJG00000012665) #18	PAWR (ENSPMJG00000012664) #19	ENSPMJG00000012663	SYT1 (ENSPMJG00000012662) #20	NAV3 (ENSPMJG00000012656) #21	E2F7 (ENSPMJG00000012655) #22	CSRP2 (ENSPMJG00000012654) #23	ZDHHC17 (ENSPMJG00000012653) #24	OSBPL8 (ENSPMJG00000012652) #25	NAP1L1 (ENSPMJG00000012651) #27	PHLDA1 (ENSPMJG00000012650) #28	KRR1 (ENSPMJG00000012649) #29	ENSPMJG00000012648	ENSPMJG00000012647	ENSPMJG00000012646	CAPS2 (ENSPMJG00000012645) #33	KCNC2 (ENSPMJG00000012644) #34	ENSPMJG00000012643	TRHDE (ENSPMJG00000012642) #37	TPH2 (ENSPMJG00000012641)	TBC1D15 (ENSPMJG00000012640)
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
Medium ground finch	MODERN SPECIES	13		TMTC2 (ENSGFOG00000000573) #8	METTL25 (ENSGFOG00000000588) #9	CCDC59 (ENSGFOG00000000604) #10	ENSGFOG00000000855 #11	ACSS3 (ENSGFOG00000004536) #12	LIN7A (ENSGFOG00000004616) #13	MYF5 (ENSGFOG00000004624) #14	MYF6 (ENSGFOG00000004628) #15	PTPRQ (ENSGFOG00000004653) #16	OTOGL (ENSGFOG00000004777) #17	RPS16 (ENSGFOG00000004986)	PPP1R12A (ENSGFOG00000005009) #18	SYT1 (ENSGFOG00000005048) #20	NAV3 (ENSGFOG00000005066) #21	E2F7 (ENSGFOG00000005143) #22	CSRP2 (ENSGFOG00000005156) #23	ZDHHC17 (ENSGFOG00000005185) #24	OSBPL8 (ENSGFOG00000005268) #25	NAP1L1 (ENSGFOG00000005292) #27	KRR1 (ENSGFOG00000005331) #29	ENSGFOG00000005348	ENSGFOG00000005356	ENSGFOG00000005369	ENSGFOG00000005379 #33	KCNC2 (ENSGFOG00000005392) #34	TRHDE (ENSGFOG00000005406) #37	TPH2 (ENSGFOG00000005460)	TBC1D15 (ENSGFOG00000005583)	RAB21 (ENSGFOG00000006163)	TMEM19 (ENSGFOG00000006172)
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
Zebra finch	MODERN SPECIES	11	METTL25 (ENSTGUG00000007841) #9	CCDC59 (ENSTGUG00000007835) #10	PPFIA2 (ENSTGUG00000007778) #11	ACSS3 (ENSTGUG00000007763) #12	LIN7A (ENSTGUG00000007757) #13	MYF5 (ENSTGUG00000007755) #14	MYF6 (ENSTGUG00000007751) #15	PTPRQ (ENSTGUG00000007720) #16	ENSTGUG00000023557	OTOGL (ENSTGUG00000007680) #17	RPS16 (ENSTGUG00000007667)	PPP1R12A (ENSTGUG00000007603) #18	PAWR (ENSTGUG00000020006) #19	SYT1 (ENSTGUG00000007572) #20	NAV3 (ENSTGUG00000007519) #21	E2F7 (ENSTGUG00000007515) #22	CSRP2 (ENSTGUG00000028299) #23	ZDHHC17 (ENSTGUG00000007477) #24	OSBPL8 (ENSTGUG00000007445) #25	BBS10 (ENSTGUG00000007444) #26	NAP1L1 (ENSTGUG00000007412) #27	PHLDA1 (ENSTGUG00000018888) #28	KRR1 (ENSTGUG00000007385) #29	ENSTGUG00000007376	ENSTGUG00000007373	ENSTGUG00000007370	CAPS2 (ENSTGUG00000007358) #33	KCNC2 (ENSTGUG00000007354) #34	TRHDE (ENSTGUG00000026259) #37	TPH2 (ENSTGUG00000007300)	TBC1D15 (ENSTGUG00000007267)
Common canary	MODERN SPECIES	6	CCDC59 (ENSSCAG00000008055) #10	PPFIA2 (ENSSCAG00000008164) #11	ACSS3 (ENSSCAG00000008416) #12	LIN7A (ENSSCAG00000008443) #13	MYF5 (ENSSCAG00000008451) #14	MYF6 (ENSSCAG00000008454) #15	PTPRQ (ENSSCAG00000008462) #16	ENSSCAG00000008481	OTOGL (ENSSCAG00000008492) #17	RPS16 (ENSSCAG00000008547)	PPP1R12A (ENSSCAG00000008580) #18	PAWR (ENSSCAG00000008657) #19	SYT1 (ENSSCAG00000008697) #20	ENSSCAG00000008738 #21	ENSSCAG00000008755 #21	E2F7 (ENSSCAG00000008773) #22	CSRP2 (ENSSCAG00000008783) #23	ZDHHC17 (ENSSCAG00000008792) #24	OSBPL8 (ENSSCAG00000008836) #25	NAP1L1 (ENSSCAG00000008861) #27	PHLDA1 (ENSSCAG00000008868) #28	KRR1 (ENSSCAG00000008870) #29	ENSSCAG00000008874	ENSSCAG00000008881	ENSSCAG00000008887	ENSSCAG00000008897 #33	KCNC2 (ENSSCAG00000008902) #34	TRHDE (ENSSCAG00000008927) #37	TPH2 (ENSSCAG00000008941)	TBC1D15 (ENSSCAG00000008954)	RAB21 (ENSSCAG00000008962)
Flycatcher	MODERN SPECIES	10	TMTC2 (ENSFALG00000010537) #8	METTL25 (ENSFALG00000010529) #9	CCDC59 (ENSFALG00000010525) #10	PPFIA2 (ENSFALG00000010521) #11	ACSS3 (ENSFALG00000010517) #12	LIN7A (ENSFALG00000010511) #13	MYF5 (ENSFALG00000010507) #14	MYF6 (ENSFALG00000010503) #15	PTPRQ (ENSFALG00000010498) #16	ENSFALG00000026391	OTOGL (ENSFALG00000010495) #17	ENSFALG00000028909	PPP1R12A (ENSFALG00000010487) #18	SYT1 (ENSFALG00000010476) #20	NAV3 (ENSFALG00000010449) #21	E2F7 (ENSFALG00000010433) #22	CSRP2 (ENSFALG00000010426) #23	ZDHHC17 (ENSFALG00000010415) #24	OSBPL8 (ENSFALG00000010404) #25	NAP1L1 (ENSFALG00000010403) #27	PHLDA1 (ENSFALG00000014745) #28	KRR1 (ENSFALG00000010395) #29	ENSFALG00000010390	ENSFALG00000010384	ENSFALG00000029079	ENSFALG00000024791 #33	KCNC2 (ENSFALG00000010376) #34	TRHDE (ENSFALG00000010372) #37	TPH2 (ENSFALG00000010361)	TBC1D15 (ENSFALG00000010336)	RAB21 (ENSFALG00000026065)
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Anatidae	ANCESTRAL SPECIES	14	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT01100000267073	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429
Pink-footed goose	MODERN SPECIES	36	RANGAP1 (ENSABRG00000004047)	CHADL (ENSABRG00000003979)	ENSABRG00000003973 ##11	ENSABRG00000003943 #12	LIN7A (ENSABRG00000003928) #13	MYF5 (ENSABRG00000003896) #14	MYF6 (ENSABRG00000003882) #15	PTPRQ (ENSABRG00000003711) #16	OTOGL (ENSABRG00000003060) #17	RPS16 (ENSABRG00000002997)	PPP1R12A (ENSABRG00000002856) #18	PAWR (ENSABRG00000002832) #19	SYT1 (ENSABRG00000002806) #20	ENSABRG00000002691	NAV3 (ENSABRG00000002539) #21	E2F7 (ENSABRG00000002456) #22	CSRP2 (ENSABRG00000002441) #23	ZDHHC17 (ENSABRG00000002383) #24	OSBPL8 (ENSABRG00000002275) #25	BBS10 (ENSABRG00000002187) #26	NAP1L1 (ENSABRG00000002153) #27	PHLDA1 (ENSABRG00000002143) #28	KRR1 (ENSABRG00000002114) #29	ENSABRG00000002091	ENSABRG00000002072	ENSABRG00000002061	CAPS2 (ENSABRG00000001989) #33	KCNC2 (ENSABRG00000001961) #34	TRHDE (ENSABRG00000001879) #37	ENSABRG00000001857	TPH2 (ENSABRG00000001821)
Duck	MODERN SPECIES		RANGAP1 (ENSAPLG00000006767)	ENSAPLG00000029393	LIN7A (ENSAPLG00000017756) #13	ENSAPLG00000001136 #13	MYF5 (ENSAPLG00000001124) #14	MYF6 (ENSAPLG00000002254) #15	PTPRQ (ENSAPLG00000016187) #16	ENSAPLG00000019979	OTOGL (ENSAPLG00000015946) #17	RPS16 (ENSAPLG00000015907)	PPP1R12A (ENSAPLG00000015197) #18	PAWR (ENSAPLG00000027740) #19	SYT1 (ENSAPLG00000014912) #20	ENSAPLG00000029309	NAV3 (ENSAPLG00000014672) #21	E2F7 (ENSAPLG00000014506) #22	ENSAPLG00000014346	ZDHHC17 (ENSAPLG00000014034) #24	OSBPL8 (ENSAPLG00000016005) #25	NAP1L1 (ENSAPLG00000016178) #27	PHLDA1 (ENSAPLG00000002044) #28	KRR1 (ENSAPLG00000016378) #29	ENSAPLG00000011934	ENSAPLG00000020051	CAPS2 (ENSAPLG00000011831) #33	KCNC2 (ENSAPLG00000008754) #34	TRHDE (ENSAPLG00000004571) #37	TPH2 (ENSAPLG00000003421)	TBC1D15 (ENSAPLG00000002695)	RAB21 (ENSAPLG00000029848)	TMEM19 (ENSAPLG00000002431)
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Japanese quail	MODERN SPECIES		METTL25 (ENSCJPG00005004697) #9	CCDC59 (ENSCJPG00005004695) #10	PPFIA2 (ENSCJPG00005001332) #11	ACSS3 (ENSCJPG00005001150) #12	LIN7A (ENSCJPG00005001112) #13	MYF5 (ENSCJPG00005001107) #14	MYF6 (ENSCJPG00005001103) #15	PTPRQ (ENSCJPG00005001013) #16	OTOGL (ENSCJPG00005000816) #17	RPS16 (ENSCJPG00005000776)	PPP1R12A (ENSCJPG00005016217) #18	PAWR (ENSCJPG00005016216) #19	SYT1 (ENSCJPG00005016211) #20	NAV3 (ENSCJPG00005016185) #21	ENSCJPG00005016175	E2F7 (ENSCJPG00005016173) #22	CSRP2 (ENSCJPG00005016171) #23	ZDHHC17 (ENSCJPG00005016170) #24	OSBPL8 (ENSCJPG00005016164) #25	BBS10 (ENSCJPG00005016163) #26	NAP1L1 (ENSCJPG00005016162) #27	PHLDA1 (ENSCJPG00005016153) #28	KRR1 (ENSCJPG00005016146) #29	ENSCJPG00005016145	ENSCJPG00005016144	ENSCJPG00005016143	ENSCJPG00005016141	CAPS2 (ENSCJPG00005016140) #33	KCNC2 (ENSCJPG00005016138) #34	TRHDE (ENSCJPG00005016108) #37	TPH2 (ENSCJPG00005016097)
Phasianidae_b	ANCESTRAL SPECIES	9	ENSGT00940000156144 #8	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Chicken	MODERN SPECIES		CCDC59 (ENSGALG00010010017) #10	ENSGALG00010013569	PPFIA2 (ENSGALG00010012450) #11	ACSS3 (ENSGALG00010012337) #12	ENSGALG00010014881 #13	ENSGALG00010012271 #13	MYF5 (ENSGALG00010012264) #14	MYF6 (ENSGALG00010012253) #15	PTPRQ (ENSGALG00010012230) #16	OTOGL (ENSGALG00010013364) #17	RPS16 (ENSGALG00010013358)	PPP1R12A (ENSGALG00010013333) #18	PAWR (ENSGALG00010013283) #19	SYT1 (ENSGALG00010012026) #20	NAV3 (ENSGALG00010013648) #21	E2F7 (ENSGALG00010013538) #22	CSRP2 (ENSGALG00010013516) #23	ZDHHC17 (ENSGALG00010013476) #24	OSBPL8 (ENSGALG00010013444) #25	BBS10 (ENSGALG00010013400) #26	NAP1L1 (ENSGALG00010013389) #27	PHLDA1 (ENSGALG00010014238) #28	KRR1 (ENSGALG00010012975) #29	GLIPR1L (ENSGALG00010012966)	GLIPR1 (ENSGALG00010012924)	GLIPR1L1 (ENSGALG00010012907)	ENSGALG00010012899	CAPS2 (ENSGALG00010012891) #33	KCNC2 (ENSGALG00010012870) #34	TRHDE (ENSGALG00010012849) #37	TPH2 (ENSGALG00010012834)
Turkey	MODERN SPECIES		ENSMGAG00000011134	TSPAN19 (ENSMGAG00000017647)	SLC6A15 (ENSMGAG00000011123) #7	ENSMGAG00000011103 #11	ACSS3 (ENSMGAG00000011096) #12	LIN7A (ENSMGAG00000011093) #13	MYF6 (ENSMGAG00000011091) #15	ENSMGAG00000018753	PTPRQ (ENSMGAG00000011081) #16	OTOGL (ENSMGAG00000011065) #17	ENSMGAG00000011060	PPP1R12A (ENSMGAG00000011011) #18	PAWR (ENSMGAG00000011010) #19	SYT1 (ENSMGAG00000011006) #20	NAV3 (ENSMGAG00000010956) #21	E2F7 (ENSMGAG00000010943) #22	CSRP2 (ENSMGAG00000010931) #23	ZDHHC17 (ENSMGAG00000010911) #24	OSBPL8 (ENSMGAG00000010890) #25	NAP1L1 (ENSMGAG00000010858) #27	ENSMGAG00000010856	KRR1 (ENSMGAG00000010844) #29	ENSMGAG00000010839	ENSMGAG00000010833	ENSMGAG00000010832	ENSMGAG00000010827	CAPS2 (ENSMGAG00000010816) #33	KCNC2 (ENSMGAG00000010812) #34	TRHDE (ENSMGAG00000010787) #37	TPH2 (ENSMGAG00000010781)	TBC1D15 (ENSMGAG00000010741)
African ostrich	MODERN SPECIES	426	TMTC2 (ENSSCUG00000008949) #8	METTL25 (ENSSCUG00000008954) #9	CCDC59 (ENSSCUG00000008956) #10	PPFIA2 (ENSSCUG00000008966) #11	ACSS3 (ENSSCUG00000008985) #12	LIN7A (ENSSCUG00000008995) #13	ENSSCUG00000008997 #13	MYF6 (ENSSCUG00000008999) #15	PTPRQ (ENSSCUG00000009002) #16	OTOGL (ENSSCUG00000009047) #17	RPS16 (ENSSCUG00000009078)	PPP1R12A (ENSSCUG00000009087) #18	SYT1 (ENSSCUG00000009090) #20	NAV3 (ENSSCUG00000009108) #21	ENSSCUG00000009143	E2F7 (ENSSCUG00000009145) #22	CSRP2 (ENSSCUG00000009147) #23	ZDHHC17 (ENSSCUG00000009151) #24	OSBPL8 (ENSSCUG00000009164) #25	NAP1L1 (ENSSCUG00000009180) #27	KRR1 (ENSSCUG00000009184) #29	ENSSCUG00000009187	ENSSCUG00000009190	ENSSCUG00000009192	ENSSCUG00000009194	CAPS2 (ENSSCUG00000009195) #33	KCNC2 (ENSSCUG00000009197) #34	TRHDE (ENSSCUG00000009206) #37	TPH2 (ENSSCUG00000009230)	TBC1D15 (ENSSCUG00000009266)	RAB21 (ENSSCUG00000009312)
Australian saltwater crocodile	MODERN SPECIES	49	PPFIA2 (ENSCPRG00005003178) #11	ACSS3 (ENSCPRG00005003271) #12	LIN7A (ENSCPRG00005003468) #13	ENSCPRG00005003470 #13	MYF5 (ENSCPRG00005003473) #14	MYF6 (ENSCPRG00005003486) #15	PTPRQ (ENSCPRG00005003495) #16	ENSCPRG00005003525	OTOGL (ENSCPRG00005003554) #17	RPS16 (ENSCPRG00005003696)	PPP1R12A (ENSCPRG00005003724) #18	PAWR (ENSCPRG00005003774) #19	SYT1 (ENSCPRG00005003800) #20	NAV3 (ENSCPRG00005004050) #21	ENSCPRG00005005917	E2F7 (ENSCPRG00005005958) #22	CSRP2 (ENSCPRG00005005963) #23	ZDHHC17 (ENSCPRG00005006020) #24	OSBPL8 (ENSCPRG00005006069) #25	BBS10 (ENSCPRG00005006087) #26	NAP1L1 (ENSCPRG00005006105) #27	PHLDA1 (ENSCPRG00005006137) #28	KRR1 (ENSCPRG00005006167) #29	ENSCPRG00005006174	ENSCPRG00005006177	ENSCPRG00005006179	ENSCPRG00005006183	CAPS2 (ENSCPRG00005006189) #33	KCNC2 (ENSCPRG00005006250) #34	TRHDE (ENSCPRG00005006331) #37	TPH2 (ENSCPRG00005006354)
Cryptodira	ANCESTRAL SPECIES	11	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00940000171110	ENSGT00940000160727 #30	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713.v #22	ENSGT00940000157713.u #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00940000171110	ENSGT00940000160727 #30	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34
Emydidae	ANCESTRAL SPECIES	10	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713.v #22	ENSGT00940000157713.u #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00940000171110	ENSGT00940000160727 #30	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34
painted turtle	MODERN SPECIES	2420														NAV3 (ENSCPBG00000017880) #21	PMS2 (ENSCPBG00000017946)	E2F7 (ENSCPBG00000018079) #22	CSRP2 (ENSCPBG00000018081) #23	ZDHHC17 (ENSCPBG00000018083) #24	OSBPL8 (ENSCPBG00000018089) #25	BBS10 (ENSCPBG00000018096) #26	NAP1L1 (ENSCPBG00000018098) #27	PHLDA1 (ENSCPBG00000018103) #28	KRR1 (ENSCPBG00000018105) #29	ENSCPBG00000018107	GLIPR1 (ENSCPBG00000018108) #30	ENSCPBG00000018109 #30	ENSCPBG00000018110	CAPS2 (ENSCPBG00000018113) #33	KCNC2 (ENSCPBG00000018114) #34
Three-toed box turtle	MODERN SPECIES	28	ENSTMTG00000000306 #11	ENSTMTG00000000244 #11	ACSS3 (ENSTMTG00000000183) #12	LIN7A (ENSTMTG00000000157) #13	ENSTMTG00000000099 #13	MYF5 (ENSTMTG00000000077) #14	MYF6 (ENSTMTG00000018967) #15	PTPRQ (ENSTMTG00000018868) #16	OTOGL (ENSTMTG00000018509) #17	RPS16 (ENSTMTG00000018474)	PPP1R12A (ENSTMTG00000018415) #18	PAWR (ENSTMTG00000018399) #19	SYT1 (ENSTMTG00000018366) #20	NAV3 (ENSTMTG00000018146) #21	ENSTMTG00000018124 #22	ENSTMTG00000018112 #22	CSRP2 (ENSTMTG00000018107) #23	ZDHHC17 (ENSTMTG00000018059) #24	OSBPL8 (ENSTMTG00000018028) #25	BBS10 (ENSTMTG00000017983) #26	NAP1L1 (ENSTMTG00000017966) #27	PHLDA1 (ENSTMTG00000017953) #28	KRR1 (ENSTMTG00000017936) #29	ENSTMTG00000017924	ENSTMTG00000017909	ENSTMTG00000017897	ENSTMTG00000017887	CAPS2 (ENSTMTG00000017868) #33	KCNC2 (ENSTMTG00000017857) #34	TRHDE (ENSTMTG00000017809) #37	TPH2 (ENSTMTG00000017763)
Testudinidae	ANCESTRAL SPECIES	12	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713.v #22	ENSGT00940000157713.u #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00940000171110	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	174															ENSCABG00000017714 #22	ENSCABG00000017712 #22	CSRP2 (ENSCABG00000017635) #23	ZDHHC17 (ENSCABG00000017622) #24	ENSCABG00000017559	ANXA1 (ENSCABG00000017367)	RORB (ENSCABG00000017351)	TRPM6 (ENSCABG00000017252)
Abingdon island giant tortoise	MODERN SPECIES	174																ENSCABG00000017714 #22	ENSCABG00000017712 #22	CSRP2 (ENSCABG00000017635) #23	ZDHHC17 (ENSCABG00000017622) #24	ENSCABG00000017559	ANXA1 (ENSCABG00000017367)	RORB (ENSCABG00000017351)	TRPM6 (ENSCABG00000017252)
Goode s thornscrub tortoise	MODERN SPECIES		METTL25 (ENSGEVG00005006938) #9	CCDC59 (ENSGEVG00005006965) #10	PPFIA2 (ENSGEVG00005007013) #11	ACSS3 (ENSGEVG00005007236) #12	LIN7A (ENSGEVG00005007306) #13	MYF5 (ENSGEVG00005007350) #14	MYF6 (ENSGEVG00005007365) #15	PTPRQ (ENSGEVG00005007409) #16	OTOGL (ENSGEVG00005007663) #17	RPS16 (ENSGEVG00005008158)	PPP1R12A (ENSGEVG00005008199) #18	PAWR (ENSGEVG00005008262) #19	SYT1 (ENSGEVG00005008297) #20	NAV3 (ENSGEVG00005008397) #21	ENSGEVG00005008646 #22	ENSGEVG00005008668 #22	CSRP2 (ENSGEVG00005008707) #23	ZDHHC17 (ENSGEVG00005008730) #24	OSBPL8 (ENSGEVG00005008789) #25	BBS10 (ENSGEVG00005008898) #26	NAP1L1 (ENSGEVG00005000012) #27	PHLDA1 (ENSGEVG00005000018) #28	KRR1 (ENSGEVG00005000023) #29	ENSGEVG00005000031	ENSGEVG00005000043	GLIPR1 (ENSGEVG00005000064) #30	ENSGEVG00005000074	CAPS2 (ENSGEVG00005000103) #33	KCNC2 (ENSGEVG00005000127) #34	TRHDE (ENSGEVG00005000157) #37	TPH2 (ENSGEVG00005000195)
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713.v #22	ENSGT00940000157713.u #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00940000171110	ENSGT00940000160727 #30	ENSGT00440000034107.b	ENSGT00940000159670 #33
Testudinidae	ANCESTRAL SPECIES	12	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713.v #22	ENSGT00940000157713.u #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00940000171110	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37
Goode s thornscrub tortoise	MODERN SPECIES		TMTC2 (ENSGEVG00005006853) #8	METTL25 (ENSGEVG00005006938) #9	CCDC59 (ENSGEVG00005006965) #10	PPFIA2 (ENSGEVG00005007013) #11	ACSS3 (ENSGEVG00005007236) #12	LIN7A (ENSGEVG00005007306) #13	MYF5 (ENSGEVG00005007350) #14	MYF6 (ENSGEVG00005007365) #15	PTPRQ (ENSGEVG00005007409) #16	OTOGL (ENSGEVG00005007663) #17	RPS16 (ENSGEVG00005008158)	PPP1R12A (ENSGEVG00005008199) #18	PAWR (ENSGEVG00005008262) #19	SYT1 (ENSGEVG00005008297) #20	NAV3 (ENSGEVG00005008397) #21	ENSGEVG00005008646 #22	ENSGEVG00005008668 #22	CSRP2 (ENSGEVG00005008707) #23	ZDHHC17 (ENSGEVG00005008730) #24	OSBPL8 (ENSGEVG00005008789) #25	BBS10 (ENSGEVG00005008898) #26	NAP1L1 (ENSGEVG00005000012) #27	PHLDA1 (ENSGEVG00005000018) #28	KRR1 (ENSGEVG00005000023) #29	ENSGEVG00005000031	ENSGEVG00005000043	GLIPR1 (ENSGEVG00005000064) #30	ENSGEVG00005000074	CAPS2 (ENSGEVG00005000103) #33	KCNC2 (ENSGEVG00005000127) #34	TRHDE (ENSGEVG00005000157) #37
Emydidae	ANCESTRAL SPECIES	10	ENSGT00530000063745.b #9	ENSGT00390000006546 #10	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713.v #22	ENSGT00940000157713.u #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000166459.A	ENSGT00940000165853.i	ENSGT00940000165853.j	ENSGT00940000171110	ENSGT00940000160727 #30	ENSGT00440000034107.b	ENSGT00940000159670 #33
Three-toed box turtle	MODERN SPECIES	28	CCDC59 (ENSTMTG00000000341) #10	ENSTMTG00000000306 #11	ENSTMTG00000000244 #11	ACSS3 (ENSTMTG00000000183) #12	LIN7A (ENSTMTG00000000157) #13	ENSTMTG00000000099 #13	MYF5 (ENSTMTG00000000077) #14	MYF6 (ENSTMTG00000018967) #15	PTPRQ (ENSTMTG00000018868) #16	OTOGL (ENSTMTG00000018509) #17	RPS16 (ENSTMTG00000018474)	PPP1R12A (ENSTMTG00000018415) #18	PAWR (ENSTMTG00000018399) #19	SYT1 (ENSTMTG00000018366) #20	NAV3 (ENSTMTG00000018146) #21	ENSTMTG00000018124 #22	ENSTMTG00000018112 #22	CSRP2 (ENSTMTG00000018107) #23	ZDHHC17 (ENSTMTG00000018059) #24	OSBPL8 (ENSTMTG00000018028) #25	BBS10 (ENSTMTG00000017983) #26	NAP1L1 (ENSTMTG00000017966) #27	PHLDA1 (ENSTMTG00000017953) #28	KRR1 (ENSTMTG00000017936) #29	ENSTMTG00000017924	ENSTMTG00000017909	ENSTMTG00000017897	ENSTMTG00000017887	CAPS2 (ENSTMTG00000017868) #33	KCNC2 (ENSTMTG00000017857) #34	TRHDE (ENSTMTG00000017809) #37
Chinese turtle	MODERN SPECIES	718	TMTC2 (ENSPSIG00000006034) #8	METTL25 (ENSPSIG00000007019) #9	PPFIA2 (ENSPSIG00000007454) #11	ACSS3 (ENSPSIG00000009322) #12	LIN7A (ENSPSIG00000011871) #13	MYF5 (ENSPSIG00000012000) #14	MYF6 (ENSPSIG00000012468) #15	ENSPSIG00000013550	OTOGL (ENSPSIG00000014034) #17	ENSPSIG00000016823	ENSPSIG00000016930	PPP1R12A (ENSPSIG00000017200) #18	PAWR (ENSPSIG00000007487) #19	SYT1 (ENSPSIG00000007501) #20	NAV3 (ENSPSIG00000009060) #21	E2F7 (ENSPSIG00000012629) #22	CSRP2 (ENSPSIG00000012637) #23	ZDHHC17 (ENSPSIG00000012905) #24	ENSPSIG00000001298
Anura	ANCESTRAL SPECIES	24	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000160716	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000156749	ENSGT00390000010948	ENSGT00940000157098	ENSGT00940000157309	ENSGT00940000161214	ENSGT00940000154932.A	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00390000018775 #29	ENSGT00940000165467	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b	ENSGT00940000156429	ENSGT00940000156786	ENSGT00390000017998
Frog	MODERN SPECIES	3	ENSXETG00000042608	ENSXETG00000032882	rpap3 (ENSXETG00000014674)	atp23 (ENSXETG00000014677)	lrig3 (ENSXETG00000021481)	slc16a7 (ENSXETG00000021479)	ENSXETG00000035432	ENSXETG00000043063	ENSXETG00000046348	tafa2 (ENSXETG00000038846)	usp15 (ENSXETG00000021472)	ppp1r12a (ENSXETG00000021468) #18	pawr (ENSXETG00000004074) #19	syt1 (ENSXETG00000004068) #20	nav3 (ENSXETG00000014323) #21	e2f7 (ENSXETG00000014320) #22	csrp2 (ENSXETG00000014318) #23	zdhhc17 (ENSXETG00000014315) #24	ENSXETG00000046768	osbpl8 (ENSXETG00000013334) #25	ENSXETG00000047866	bbs10 (ENSXETG00000031389) #26	nap1l1 (ENSXETG00000013323) #27	phlda1 (ENSXETG00000013321) #28	ENSXETG00000046760	krr1 (ENSXETG00000013312) #29	ENSXETG00000043158	ccdc107 (ENSXETG00000030850)	CAPS2 (ENSXETG00000032225) #33	kcnc2 (ENSXETG00000032745) #34	ENSXETG00000043992
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000029332	PTPRB (ENSLLEG00000029389)	PTPRR (ENSLLEG00000029638)	ENSLLEG00000029670	ENSLLEG00000004652	TSPAN8 (ENSLLEG00000004690)	ENSLLEG00000004700	ENSLLEG00000004706	LGR5 (ENSLLEG00000004723)	ZFC3H1 (ENSLLEG00000004747)	TMEM19 (ENSLLEG00000004833)	RAB21 (ENSLLEG00000004844)	TBC1D15 (ENSLLEG00000004867)	SCUBE1 (ENSLLEG00000004904)	ENSLLEG00000004936	E2F7 (ENSLLEG00000004947) #22	CSRP2 (ENSLLEG00000004972) #23	ZDHHC17 (ENSLLEG00000005022) #24	OSBPL8 (ENSLLEG00000005208) #25	BBS10 (ENSLLEG00000005343) #26	ENSLLEG00000005358	ENSLLEG00000005436 #27	PHLDA1 (ENSLLEG00000006026) #28	ENSLLEG00000006041	KRR1 (ENSLLEG00000006073) #29	ENSLLEG00000006302	CAPS2 (ENSLLEG00000006381) #33	ENSLLEG00000006706 #34	ENSLLEG00000006729 #34	ENSLLEG00000006750	ENSLLEG00000006766 #37
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	944															NAV3 (ENSLACG00000001187) #21	e2f7 (ENSLACG00000014031) #22
Coelacanth	MODERN SPECIES	20																ENSLACG00000000448 #22
Actinopterygii	ANCESTRAL SPECIES	17	ENSGT00390000006546 #10	ENSGT00660000096975	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00940000159215 #16	ENSGT00960000187527	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000165853	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37	ENSGT00950000182885.A.b
Neopterygii	ANCESTRAL SPECIES	21	ENSGT00390000006546 #10	ENSGT00660000096975	ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00960000187527	ENSGT00940000159215 #16	ENSGT00940000160698 #17	ENSGT00390000013067	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394 #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000165853	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37
Osteoglossocephalai	ANCESTRAL SPECIES	48						ENSGT01050000244900.a.a.a.a.b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00390000013067.k.b	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394.i.a #20	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00390000002417 #26	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000165853	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371 #34	ENSGT00940000155878 #37
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	356											ENSGT00390000013067.k.a	ENSGT00940000156120.a.b #18	ENSGT00390000000406.m #19	ENSGT00940000155394.i.a #20	ENSGT00940000158014.a.a #21	ENSGT00940000157713.a #22	ENSGT00940000154980.eb #23	ENSGT00530000063074.b.b.d #24	ENSGT00940000156622.b #25	ENSGT00390000002417 #26	ENSGT00940000153362.a.c #27	ENSGT00440000039564.b.b #28	ENSGT00940000160727.g #30	ENSGT00940000157371.p #34
Asian bonytongue	MODERN SPECIES	20	ENSSFOG00015006795	SLC6A12 (ENSSFOG00015006733)	PARP11 (ENSSFOG00015006711)	PARP11 (ENSSFOG00015030308)	TMTC2 (ENSSFOG00015006658) #8	ppfia2 (ENSSFOG00015006565) #11	ENSSFOG00015006552	ENSSFOG00015006506	ENSSFOG00015006456 ##14	lin7a (ENSSFOG00015006439) #13	rps16 (ENSSFOG00015027301)	ppp1r12a (ENSSFOG00015006318) #18	pawr (ENSSFOG00015029824) #19	syt1a (ENSSFOG00015029529) #20	nav3 (ENSSFOG00015005938) #21	e2f7 (ENSSFOG00015005873) #22	csrp2 (ENSSFOG00015026621) #23	zdhhc17 (ENSSFOG00015026847) #24	OSBPL8 (ENSSFOG00015005711) #25	BBS10 (ENSSFOG00015005695) #26	nap1l1 (ENSSFOG00015005659) #27	phlda1 (ENSSFOG00015005642) #28	GLIPR1 (ENSSFOG00015005634) #30	kcnc2 (ENSSFOG00015005624) #34	TRHDE (ENSSFOG00015005568) #37	tbc1d15 (ENSSFOG00015005522)	rab21 (ENSSFOG00015005496)	TMEM19 (ENSSFOG00015005490)	LGR5 (ENSSFOG00015005424)	TSPAN8 (ENSSFOG00015005396)	ENSSFOG00015029014
P. kingsleyae	MODERN SPECIES	123				ppfia2 (ENSPKIG00000001660) #11	lin7a (ENSPKIG00000001713) #13	MYF6 (ENSPKIG00000001745) #15	ENSPKIG00000001785	ENSPKIG00000001847	rps16 (ENSPKIG00000001864)	ppp1r12a (ENSPKIG00000002012) #18	ENSPKIG00000002120	pawr (ENSPKIG00000002134) #19	syt1a (ENSPKIG00000002150) #20	nav3 (ENSPKIG00000002193) #21	ENSPKIG00000002256	e2f7 (ENSPKIG00000002278) #22	csrp2 (ENSPKIG00000002306) #23	zdhhc17 (ENSPKIG00000002371) #24	OSBPL8 (ENSPKIG00000002490) #25	BBS10 (ENSPKIG00000002580) #26	nap1l1 (ENSPKIG00000002599) #27	phlda1 (ENSPKIG00000002635) #28	ENSPKIG00000002671	GLIPR1 (ENSPKIG00000002772) #30	GLIPR1 (ENSPKIG00000002790) #30	kcnc2 (ENSPKIG00000002807) #34	ENSPKIG00000002831	trmu (ENSPKIG00000002849)	gtse1 (ENSPKIG00000002881)	alg10 (ENSPKIG00000002907)	ENSPKIG00000002930
Osteoglossiformes	ANCESTRAL SPECIES	251					ENSGT01050000244900.a.a.a.a.b.`b #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a.k #15	ENSGT00940000167492.i	ENSGT00940000160698 #17	ENSGT00390000013067.l	ENSGT00940000156120.a.a #18	ENSGT00390000000406.n #19	ENSGT00940000158014.a.b #21	ENSGT00940000157713.b #22	ENSGT00940000154980.db #23	ENSGT00530000063074.b.b.c #24	ENSGT00940000156622.a #25	ENSGT00940000153362.a.d #27	ENSGT00440000039564.b.a #28	ENSGT00940000165334	ENSGT00390000018775 #29	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000159670 #33	ENSGT00940000157371.o #34
P. kingsleyae	MODERN SPECIES	310															nav3 (ENSPKIG00000020143) #21	e2f7 (ENSPKIG00000020079) #22	csrp2 (ENSPKIG00000020060) #23	zdhhc17 (ENSPKIG00000020018) #24	OSBPL8 (ENSPKIG00000019878) #25	nap1l1 (ENSPKIG00000019735) #27	phlda1 (ENSPKIG00000019691) #28	ENSPKIG00000019660	krr1 (ENSPKIG00000019635) #29	cmah (ENSPKIG00000019589)	ENSPKIG00000019565	ENSPKIG00000019532 #33	kcnc2 (ENSPKIG00000019500) #34	ENSPKIG00000019483
Clupeocephala	ANCESTRAL SPECIES	188	ENSGT00730000111007.a.a	ENSGT00940000158997	ENSGT00940000165344	ENSGT01050000244900.a.a.a.a.b.bb #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00390000013067.k.a	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394.i.a #20	ENSGT00940000158014 #21	ENSGT00940000171263	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000159670 #33	ENSGT00940000165853	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34
Otomorpha	ANCESTRAL SPECIES	204	ENSGT00940000164333	ENSGT00730000111007.a.a	ENSGT00940000158997	ENSGT00940000165344	ENSGT01050000244900.a.a.a.a.b.bb #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00390000013067.k.a	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394.i.a #20	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000156038.b	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000159670 #33	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371.mb #34	ENSGT00940000157033.g	ENSGT00940000155811
Clupeiformes	ANCESTRAL SPECIES	62	ENSGT00730000111007.a.a	ENSGT00940000158997	ENSGT00940000165344	ENSGT00940000172289	ENSGT01050000244900.a.a.a.a.b.bb #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00390000013067.k.a	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394.i.a #20	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000156038.b	ENSGT00390000018775 #29	ENSGT00940000165853	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371.mb #34	ENSGT00940000157033.g	ENSGT00940000155811
Atlantic herring	MODERN SPECIES	7	PTPRR (ENSCHAG00000026415)	ENSCHAG00000026395	ENSCHAG00000026390	ENSCHAG00000026385	ENSCHAG00000026377	rps16 (ENSCHAG00000026366)	ppp1r12a (ENSCHAG00000026294) #18	pawr (ENSCHAG00000026279) #19	syt1a (ENSCHAG00000026254) #20	nav3 (ENSCHAG00000025811) #21	zgc:173443 (ENSCHAG00000025779)	ENSCHAG00000025776	ENSCHAG00000025772	ENSCHAG00000025765	ENSCHAG00000025763	e2f7 (ENSCHAG00000025754) #22	csrp2 (ENSCHAG00000025740) #23	zdhhc17 (ENSCHAG00000025714) #24	OSBPL8 (ENSCHAG00000024465) #25	nap1l1 (ENSCHAG00000024161) #27	phlda1 (ENSCHAG00000024142) #28	ENSCHAG00000024139	ENSCHAG00000024134	krr1 (ENSCHAG00000024082) #29	ENSCHAG00000024074	ENSCHAG00000024067	kcnc2 (ENSCHAG00000024050) #34	frs2a (ENSCHAG00000024043)	yeats4 (ENSCHAG00000024028)	gart (ENSCHAG00000023964)	n6amt1 (ENSCHAG00000023951)
Denticle herring	MODERN SPECIES	6	ppfia2 (ENSDCDG00000027692) #11	ACSS3 (ENSDCDG00000027609) #12	lin7a (ENSDCDG00000027602) #13	myf5 (ENSDCDG00000027600) #14	myf6 (ENSDCDG00000027598) #15	rps16 (ENSDCDG00000027593)	ppp1r12a (ENSDCDG00000027584) #18	pawr (ENSDCDG00000027583) #19	ENSDCDG00000027582	syt1a (ENSDCDG00000027575) #20	nav3 (ENSDCDG00000026354) #21	ENSDCDG00000026331	ENSDCDG00000026328	ENSDCDG00000026326	ENSDCDG00000026325	e2f7 (ENSDCDG00000026324) #22	csrp2 (ENSDCDG00000026322) #23	zdhhc17 (ENSDCDG00000026306) #24	OSBPL8 (ENSDCDG00000022762) #25	nap1l1 (ENSDCDG00000022045) #27	phlda1 (ENSDCDG00000022002) #28	ENSDCDG00000021998	ENSDCDG00000021993	krr1 (ENSDCDG00000021989) #29	ENSDCDG00000021985	cmah (ENSDCDG00000021944)	ENSDCDG00000021940	kcnc2 (ENSDCDG00000021936) #34	frs2a (ENSDCDG00000021933)	yeats4 (ENSDCDG00000021924)	optn (ENSDCDG00000021922)
Otophysi	ANCESTRAL SPECIES	40	ENSGT00940000164333	ENSGT00730000111007.a.a	ENSGT00940000158997	ENSGT00940000165344	ENSGT01050000244900.a.a.a.a.b.bb #11	ENSGT00940000157479 #12	ENSGT00940000153222.a.a #13	ENSGT00950000182959.a.a #14	ENSGT00950000182959.a.b.b.a #15	ENSGT00390000013067.l	ENSGT00940000156120.a #18	ENSGT00390000000406 #19	ENSGT00940000155394.i.a #20	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371.mb #34	ENSGT00940000157033.g	ENSGT00940000155811	ENSGT00730000110905.b	ENSGT00390000006367.c
Cyprinoidei	ANCESTRAL SPECIES	62	ENSGT00940000158612	ENSGT01030000234637.a.b	ENSGT00940000153456.b.a	ENSGT00940000156858	ENSGT00940000155765.s.b	ENSGT00940000154471.a.b.a.b.u.b	ENSGT00940000165209	ENSGT00940000155728.p	ENSGT00510000048519.a	ENSGT00940000156628.c	ENSGT01080000257336.b.e.b.a.a.d	ENSGT00390000011863.d.a.a	ENSGT00550000074907	ENSGT00390000004586	ENSGT01050000244841.A.b.b.a.a	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371.mb #34	ENSGT00940000157033.g	ENSGT00940000155811	ENSGT00730000110905.b	ENSGT00390000006367.c
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	336	ENSGT00940000158612.g	ENSGT01030000234637.a.b.k	ENSGT00940000153456.b.a.v	ENSGT00940000156858.d	ENSGT00940000155765.s.b.a	ENSGT00940000154471.a.b.a.b.u.b.a	ENSGT00940000165209.c	ENSGT00940000155728.p.c	ENSGT00510000048519.a.f	ENSGT00940000156628.c.d	ENSGT01080000257336.b.e.b.a.a.d.b	ENSGT00390000011863.d.a.a.a	ENSGT00550000074907.i	ENSGT00390000004586	ENSGT01050000244841.A.b.b.a.a.b	ENSGT00940000157713.c #22	ENSGT00940000154980.gb #23	ENSGT00530000063074.b.b.e #24	ENSGT00940000156622.h #25	ENSGT00940000153362.a.f #27	ENSGT00440000039564.b.h #28	ENSGT00390000018775.b #29	ENSGT00390000010830.z	ENSGT00440000034107.b.b	ENSGT00940000155811.s	ENSGT00730000110905.b.p	ENSGT00390000006367.c.l	ENSGT01100000263571.i.a.a.a.a.a.b.b	ENSGT00940000158969.c	ENSGT00390000017324.t
Cyprininae_a	ANCESTRAL SPECIES	218	ENSGT00940000158612.h	ENSGT01030000234637.a.b.l	ENSGT00940000153456.b.a.u	ENSGT00940000156858.c	ENSGT00940000155765.s.b.b	ENSGT00940000154471.a.b.a.b.u.b.b	ENSGT00940000165209.d	ENSGT00940000155728.p.d	ENSGT00510000048519.a.f.b	ENSGT00940000156628.c.c	ENSGT01080000257336.b.e.b.a.a.d.a	ENSGT00390000011863.d.a.a.b	ENSGT00550000074907.j	ENSGT00390000004586.j	ENSGT01050000244841.A.b.b.a.a.b	ENSGT00940000157713.c #22	ENSGT00940000154980.gb #23	ENSGT00530000063074.b.b.e #24	ENSGT00940000156622.h #25	ENSGT00940000153362.a.f #27	ENSGT00440000039564.b.h #28	ENSGT00390000018775.b #29	ENSGT00390000010830.z	ENSGT00440000034107.b.b	ENSGT00940000157371.mb.b #34	ENSGT00940000157033.g.b	ENSGT00940000155811.s	ENSGT00730000110905.b.p	ENSGT00390000006367.c.l	ENSGT01100000263571.i.a.a.a.a.a.b.b	ENSGT00940000158969.c
Common carp reference	MODERN SPECIES	36	ENSCCRG00000081390	SYPL1 (ENSCCRG00000072438)	NAMPT (ENSCCRG00000018383)	pik3cg (ENSCCRG00000033481)	ENSCCRG00000021757	ENSCCRG00000018528	ENSCCRG00000018493	plekha5 (ENSCCRG00000062976)	aebp2 (ENSCCRG00000068042)	PDE3A (ENSCCRG00000021749)	slco1c1 (ENSCCRG00000012631)	bcap29 (ENSCCRG00000059372)	dus4l (ENSCCRG00000061962)	COG5 (ENSCCRG00000036890)	gpr22a (ENSCCRG00000066211)	e2f7 (ENSCCRG00000030706) #22	csrp2 (ENSCCRG00000000482) #23	zdhhc17 (ENSCCRG00000008430) #24	OSBPL8 (ENSCCRG00000024970) #25	nap1l1 (ENSCCRG00000033369) #27	phlda1 (ENSCCRG00000067686) #28	krr1 (ENSCCRG00000066010) #29	cmah (ENSCCRG00000040225)	ENSCCRG00000010775	kcnc2 (ENSCCRG00000063220) #34	frs2a (ENSCCRG00000027909)	yeats4 (ENSCCRG00000000371)	ENSCCRG00000000395	si:dkey-97m3.1 (ENSCCRG00000000430)	ENSCCRG00000043796	ENSCCRG00000043792
Golden-line barbel	MODERN SPECIES	128	znf800b (ENSSGRG00000001136)	ATXN7L1 (ENSSGRG00000054961)	ENSSGRG00000054960	pik3cg (ENSSGRG00000054956)	ENSSGRG00000054943	ENSSGRG00000054935	ENSSGRG00000054932	plekha5 (ENSSGRG00000054928)	ENSSGRG00000054927	PDE3A (ENSSGRG00000054926)	slco1c1 (ENSSGRG00000054925)	bcap29 (ENSSGRG00000054923)	dus4l (ENSSGRG00000054922)	gpr22a (ENSSGRG00000054921)	COG5 (ENSSGRG00000054919)	e2f7 (ENSSGRG00000054917) #22	csrp2 (ENSSGRG00000054914) #23	zdhhc17 (ENSSGRG00000054899) #24	OSBPL8 (ENSSGRG00000054869) #25	nap1l1 (ENSSGRG00000054842) #27	phlda1 (ENSSGRG00000054835) #28	krr1 (ENSSGRG00000054834) #29	cmah (ENSSGRG00000054828)	ENSSGRG00000054826	kcnc2 (ENSSGRG00000054824) #34	frs2a (ENSSGRG00000054823)	yeats4 (ENSSGRG00000054821)	cpsf6 (ENSSGRG00000054820)	si:dkey-97m3.1 (ENSSGRG00000054813)	ENSSGRG00000054812	ANO6 (ENSSGRG00000054809)
Goldfish	MODERN SPECIES	21	asb13a.1 (ENSCARG00000011678)	net1 (ENSCARG00000011590)	mkln1 (ENSCARG00000011488)	cyb5r3 (ENSCARG00000011082)	btbd11a (ENSCARG00000010980)	cry1a (ENSCARG00000010868)	tnnt2c (ENSCARG00000010836)	si:dkey-222f8.3 (ENSCARG00000010821)	braf (ENSCARG00000010227)	mrps33 (ENSCARG00000010184)	tmem178bb (ENSCARG00000010173)	cnot4b (ENSCARG00000010133)	mkrn1 (ENSCARG00000010065)	ENSCARG00000010044	rergla (ENSCARG00000010032)	e2f7 (ENSCARG00000010011) #22	csrp2 (ENSCARG00000009996) #23	zdhhc17 (ENSCARG00000009966) #24	ENSCARG00000009923	ANO6 (ENSCARG00000008732)	mrpl42 (ENSCARG00000008651)	ENSCARG00000008618	nudt4b (ENSCARG00000008605)	dnajc2 (ENSCARG00000008520)	pmpcb (ENSCARG00000007920)	med21 (ENSCARG00000007874)	TM7SF3 (ENSCARG00000007779)	fgfr1op2 (ENSCARG00000007760)	gas2l3 (ENSCARG00000007732)	arid2 (ENSCARG00000007634)	shisal1a (ENSCARG00000007597)
Cyprininae	ANCESTRAL SPECIES	407															ENSGT01050000244841.A.b.b.a.a.a	ENSGT00940000157713.d #22	ENSGT00940000154980.fb #23	ENSGT00530000063074.b.b.f #24	ENSGT00940000156622.g #25	ENSGT00940000153362.a.e #27	ENSGT00440000039564.b.g.a #28	ENSGT00940000165334	ENSGT00950000182879.a.b.b.q.b	ENSGT00390000018775.a #29	ENSGT00940000160727 #30	ENSGT00390000010830.y	ENSGT00440000034107.b.a	ENSGT00940000157371.mb #34	ENSGT00940000157033.g.a	ENSGT00940000157033.g.b	ENSGT00940000155811.t
Goldfish	MODERN SPECIES	33	mical3b (ENSCARG00000048671)	svopl (ENSCARG00000049425)	ENSCARG00000049718	ENSCARG00000049802	ENSCARG00000049818	ENSCARG00000049824	plekha5 (ENSCARG00000049888)	aebp2 (ENSCARG00000050458)	PDE3A (ENSCARG00000050489)	slco1c1 (ENSCARG00000050572)	bcap29 (ENSCARG00000050589)	dus4l (ENSCARG00000050607)	ENSCARG00000050692	gpr22a (ENSCARG00000050713)	ENSCARG00000050728	e2f7 (ENSCARG00000050734) #22	csrp2 (ENSCARG00000050767) #23	zdhhc17 (ENSCARG00000050797) #24	OSBPL8 (ENSCARG00000051597) #25	nap1l1 (ENSCARG00000053030) #27	phlda1 (ENSCARG00000053078) #28	ENSCARG00000053084	ENSCARG00000053118	krr1 (ENSCARG00000053601) #29	GLIPR1 (ENSCARG00000053691) #30	cmah (ENSCARG00000053842)	ENSCARG00000054118	kcnc2 (ENSCARG00000054145) #34	frs2a (ENSCARG00000054207)	yeats4 (ENSCARG00000054228)	cpsf6 (ENSCARG00000054257)
Cyprininae_a	ANCESTRAL SPECIES	176	ENSGT00940000158612.g	ENSGT01030000234637.a.b.k	ENSGT00940000153456.b.a.v	ENSGT00940000156858.d	ENSGT00940000155765.s.b.a	ENSGT00940000154471.a.b.a.b.u.b.a	ENSGT00940000165209.c	ENSGT00940000155728.p.c	ENSGT00510000048519.a.f.a	ENSGT00940000156628.c.d	ENSGT01080000257336.b.e.b.a.a.d.b	ENSGT00390000011863.d.a.a.a	ENSGT00550000074907.i	ENSGT00390000004586.i	ENSGT01050000244841.A.b.b.a.a.a	ENSGT00940000157713.d #22	ENSGT00940000154980.fb #23	ENSGT00530000063074.b.b.f #24	ENSGT00940000156622.g #25	ENSGT00940000153362.a.e #27	ENSGT00440000039564.b.g.a #28	ENSGT00940000165334	ENSGT00950000182879.a.b.b.q.b	ENSGT00390000018775.a #29	ENSGT00940000165467.c	ENSGT00940000160727 #30	ENSGT00390000010830.y	ENSGT00440000034107.b.a	ENSGT00940000157371.mb.a #34	ENSGT00940000157033.g.a	ENSGT00940000155811.t
Common carp reference	MODERN SPECIES	8	znf800b (ENSCCRG00000002416)	SYPL1 (ENSCCRG00000034117)	ENSCCRG00000033512	pik3cg (ENSCCRG00000023794)	ENSCCRG00000002339	ENSCCRG00000082257	ENSCCRG00000073344	plekha5 (ENSCCRG00000002321)	aebp2 (ENSCCRG00000005082)	PDE3A (ENSCCRG00000021746)	slco1c1 (ENSCCRG00000036873)	bcap29 (ENSCCRG00000036879)	dus4l (ENSCCRG00000079501)	COG5 (ENSCCRG00000032375)	gpr22a (ENSCCRG00000072873)	e2f7 (ENSCCRG00000000460) #22	csrp2 (ENSCCRG00000008549) #23	zdhhc17 (ENSCCRG00000055327) #24	OSBPL8 (ENSCCRG00000075651) #25	ENSCCRG00000075787	nap1l1 (ENSCCRG00000025058) #27	phlda1 (ENSCCRG00000070896) #28	ENSCCRG00000059233	ENSCCRG00000011276	ENSCCRG00000033278	krr1 (ENSCCRG00000033226) #29	ENSCCRG00000040216	cmah (ENSCCRG00000042510)	ENSCCRG00000064073	kcnc2 (ENSCCRG00000043410) #34	frs2a (ENSCCRG00000013888)
Golden-line barbel	MODERN SPECIES	3010																e2f7 (ENSSGRG00000010966) #22
Zebrafish	MODERN SPECIES	19	znf800b (ENSDARG00000039843)	ENSDARG00000089860	SYPL1 (ENSDARG00000077356)	NAMPT (ENSDARG00000030598)	pik3cg (ENSDARG00000017757)	ENSDARG00000060248	ENSDARG00000098551	plekha5 (ENSDARG00000045870)	aebp2 (ENSDARG00000006038)	PDE3A (ENSDARG00000004227)	slco1c1 (ENSDARG00000016749)	bcap29 (ENSDARG00000016231)	dus4l (ENSDARG00000006567)	gpr22a (ENSDARG00000004592)	cog5 (ENSDARG00000008235)	e2f7 (ENSDARG00000008986) #22	csrp2 (ENSDARG00000011961) #23	zdhhc17 (ENSDARG00000070441) #24	OSBPL8 (ENSDARG00000039724) #25	nap1l1 (ENSDARG00000101813) #27	phlda1 (ENSDARG00000099129) #28	ENSDARG00000053709	krr1 (ENSDARG00000011246) #29	ENSDARG00000045224	cmah (ENSDARG00000057714)	ENSDARG00000079143	frs2a (ENSDARG00000045873)	kcnc2 (ENSDARG00000057468) #34	yeats4 (ENSDARG00000045874)	cpsf6 (ENSDARG00000018618)	FAR2 (ENSDARG00000009262)
Euteleosteomorpha	ANCESTRAL SPECIES	60			ENSGT00940000164836	ENSGT00390000005508.a.b	ENSGT00940000165434	ENSGT00940000153582.a.n	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248862	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000171263	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000165853	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00940000156608	ENSGT00940000155441	ENSGT01020000230346.B
Acanthomorphata	ANCESTRAL SPECIES	166				ENSGT00940000164836	ENSGT00390000005508.a.b	ENSGT00400000022326.b.b.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248862	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000171263	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000165467	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441	ENSGT01020000230346.B	ENSGT01070000253775.a.d.a.b.a
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT01100000263519.A.b.b.a.a.c	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000171263	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT01100000263519.A.b.b.a.a.c	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000171263	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00940000153582.a.n	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263533.b.b.b.a.a.a.b.a	ENSGT00940000179382	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000171263	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000156038.b	ENSGT01030000237814	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263533.b.b.b.a.a.a.b.a	ENSGT00940000179382	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000171263	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000156038.b	ENSGT01030000237814	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441	ENSGT01020000230346.B
Anabantoidei	ANCESTRAL SPECIES	26	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT00390000005508.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441	ENSGT01020000230346.B
Climbing perch	MODERN SPECIES	14	ENSATEG00000027246	ENSATEG00000003129	ENSATEG00000003044	ENSATEG00000027900	ENSATEG00000002897	ENSATEG00000029410	apex1 (ENSATEG00000028063)	ENSATEG00000002767	si:ch211-214j24.10 (ENSATEG00000002825)	ENSATEG00000002661	ENSATEG00000026785	NAV3 (ENSATEG00000002447) #21	ENSATEG00000029522	ENSATEG00000002361	ENSATEG00000029789	e2f7 (ENSATEG00000002350) #22	csrp2 (ENSATEG00000002332) #23	zdhhc17 (ENSATEG00000002244) #24	OSBPL8 (ENSATEG00000002158) #25	nap1l1 (ENSATEG00000002101) #27	phlda1 (ENSATEG00000002092) #28	ENSATEG00000002065	krr1 (ENSATEG00000002026) #29	cmah (ENSATEG00000001968)	ENSATEG00000029472	kcnc2 (ENSATEG00000001884) #34	ENSATEG00000001873	PMPCB (ENSATEG00000027573)	DNAJC2 (ENSATEG00000001856)	PSMC2 (ENSATEG00000001788)	SLC26A5 (ENSATEG00000001768)
Siamese fighting fish	MODERN SPECIES	20	slc38a4 (ENSBSLG00000012424)	AMIGO2 (ENSBSLG00000012407)	ANO4 (ENSBSLG00000011771)	NXPE3 (ENSBSLG00000011349)	ENSBSLG00000011346	NXPE3 (ENSBSLG00000011330)	ENSBSLG00000011318	ENSBSLG00000011314	ENSBSLG00000011305	osgep (ENSBSLG00000011272)	si:ch211-214j24.10 (ENSBSLG00000011265)	apex1 (ENSBSLG00000011259)	ENSBSLG00000011126	nav3 (ENSBSLG00000010085) #21	ENSBSLG00000010009	e2f7 (ENSBSLG00000009981) #22	csrp2 (ENSBSLG00000009949) #23	zdhhc17 (ENSBSLG00000009631) #24	OSBPL8 (ENSBSLG00000009400) #25	nap1l1 (ENSBSLG00000009045) #27	phlda1 (ENSBSLG00000008970) #28	ENSBSLG00000008937	dera (ENSBSLG00000008613)	lmo3 (ENSBSLG00000008530)	ENSBSLG00000008524	ENSBSLG00000008517	arhgef39 (ENSBSLG00000008488)	ENSBSLG00000008482	ENSBSLG00000008472	ENSBSLG00000008330	TMEM121B (ENSBSLG00000008319)
Zig-zag eel	MODERN SPECIES	15	ENSMAMG00000023548	ENSMAMG00000025115	ENSMAMG00000023541	ENSMAMG00000023537	ENSMAMG00000023532	ENSMAMG00000023528	ENSMAMG00000024929	ENSMAMG00000028093	ENSMAMG00000023524	apex1 (ENSMAMG00000025566)	OSGEP (ENSMAMG00000023520)	si:ch211-214j24.10 (ENSMAMG00000023522)	ENSMAMG00000023517	ENSMAMG00000023513	NAV3 (ENSMAMG00000023499) #21	e2f7 (ENSMAMG00000023495) #22	csrp2 (ENSMAMG00000028219) #23	zdhhc17 (ENSMAMG00000023485) #24	OSBPL8 (ENSMAMG00000023475) #25	nap1l1 (ENSMAMG00000023470) #27	phlda1 (ENSMAMG00000023469) #28	ENSMAMG00000028728	krr1 (ENSMAMG00000024455) #29	cmah (ENSMAMG00000023463)	ENSMAMG00000025561	kcnc2 (ENSMAMG00000023459) #34	ENSMAMG00000023456	PMPCB (ENSMAMG00000026031)	DNAJC2 (ENSMAMG00000023453)	PSMC2 (ENSMAMG00000023451)	SLC26A5 (ENSMAMG00000023449)
Carangaria	ANCESTRAL SPECIES	22	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441
Carangaria_A	ANCESTRAL SPECIES	33	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441
Seriola	ANCESTRAL SPECIES	9	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836.q	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00940000171263	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000156038.b	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441
Greater amberjack	MODERN SPECIES	60	ENSSDUG00000016229	ENSSDUG00000016250	ENSSDUG00000016267	ENSSDUG00000016291	selenoo2 (ENSSDUG00000016311)	ENSSDUG00000016330	apex1 (ENSSDUG00000016377)	osgep (ENSSDUG00000016387)	si:ch211-214j24.10 (ENSSDUG00000016433)	ENSSDUG00000016447	ENSSDUG00000016489	nav3 (ENSSDUG00000016499) #21	ENSSDUG00000016552	ENSSDUG00000016562	ENSSDUG00000016578	e2f7 (ENSSDUG00000016593) #22	csrp2 (ENSSDUG00000016613) #23	zdhhc17 (ENSSDUG00000016634) #24	OSBPL8 (ENSSDUG00000016681) #25	ENSSDUG00000016759	nap1l1 (ENSSDUG00000016778) #27	phlda1 (ENSSDUG00000016847) #28	ENSSDUG00000016866	ENSSDUG00000016929	krr1 (ENSSDUG00000016972) #29	GLIPR1 (ENSSDUG00000017006) #30	ENSSDUG00000017018	kcnc2 (ENSSDUG00000017034) #34	phax (ENSSDUG00000017043)	pmpcb (ENSSDUG00000017054)	dnajc2 (ENSSDUG00000017074)
Yellowtail amberjack	MODERN SPECIES	2797											ENSSLDG00000008134	ENSSLDG00000008170	nav3 (ENSSLDG00000008238) #21	ENSSLDG00000008488	ENSSLDG00000008727	e2f7 (ENSSLDG00000008745) #22	csrp2 (ENSSLDG00000008780) #23	zdhhc17 (ENSSLDG00000008813) #24	OSBPL8 (ENSSLDG00000008914) #25	nap1l1 (ENSSLDG00000009101) #27	phlda1 (ENSSLDG00000009138) #28	ENSSLDG00000009157	krr1 (ENSSLDG00000009197) #29	GLIPR1 (ENSSLDG00000009234) #30	ENSSLDG00000009244	kcnc2 (ENSSLDG00000009270) #34
Barramundi perch	MODERN SPECIES	114														nav3 (ENSLCAG00010015471) #21	ENSLCAG00010015502	e2f7 (ENSLCAG00010015508) #22	csrp2 (ENSLCAG00010015510) #23	zdhhc17 (ENSLCAG00010015522) #24	OSBPL8 (ENSLCAG00010015553) #25	nap1l1 (ENSLCAG00010015571) #27	phlda1 (ENSLCAG00010015615) #28	ENSLCAG00010015628	ENSLCAG00010015637	ENSLCAG00010015640	krr1 (ENSLCAG00010015642) #29	GLIPR1 (ENSLCAG00010015646) #30	ENSLCAG00010015648	kcnc2 (ENSLCAG00010015653) #34	phax (ENSLCAG00010015659)	pmpcb (ENSLCAG00010015700)	dnajc2 (ENSLCAG00010015869)
Pleuronectoidei	ANCESTRAL SPECIES	37	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263519.A.b.b.a.a.c	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263533.b.b.b.a.a.a.b.a	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000165853	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441
Turbot	MODERN SPECIES	11	ENSSMAG00000013118	ENSSMAG00000013169	ENSSMAG00000013173	ENSSMAG00000013233	ENSSMAG00000013267	ENSSMAG00000013277	ENSSMAG00000013281	ENSSMAG00000013291	apex1 (ENSSMAG00000028423)	ENSSMAG00000013365	si:ch211-214j24.10 (ENSSMAG00000013405)	ENSSMAG00000013419	ENSSMAG00000013533	NAV3 (ENSSMAG00000013542) #21	ENSSMAG00000036335	e2f7 (ENSSMAG00000013810) #22	csrp2 (ENSSMAG00000028088) #23	zdhhc17 (ENSSMAG00000013866) #24	OSBPL8 (ENSSMAG00000015487) #25	nap1l1 (ENSSMAG00000015334) #27	phlda1 (ENSSMAG00000015324) #28	ENSSMAG00000015293	ENSSMAG00000027842	ENSSMAG00000015287	ENSSMAG00000015269	ENSSMAG00000015260	ENSSMAG00000015213	ENSSMAG00000015664	ENSSMAG00000015614	ENSSMAG00000037102	chst11 (ENSSMAG00000015693)
Tongue sole	MODERN SPECIES	18	slc13a4 (ENSCSEG00000017438)	zgc:162331 (ENSCSEG00000017428)	BMAL2 (ENSCSEG00000017417)	stk38l (ENSCSEG00000017396)	med21 (ENSCSEG00000017391)	fgfr1op2 (ENSCSEG00000017375)	TM7SF3 (ENSCSEG00000017360)	gas2l3 (ENSCSEG00000017311)	arid2 (ENSCSEG00000017204)	ENSCSEG00000017186	slc38a2 (ENSCSEG00000017164)	slc38a4 (ENSCSEG00000017134)	ENSCSEG00000017128	kcnc2 (ENSCSEG00000017121) #34	ENSCSEG00000017085	e2f7 (ENSCSEG00000017069) #22	csrp2 (ENSCSEG00000017059) #23	zdhhc17 (ENSCSEG00000017045) #24	ENSCSEG00000017039	OSBPL8 (ENSCSEG00000016987) #25	nap1l1 (ENSCSEG00000016887) #27	phlda1 (ENSCSEG00000016873) #28	ENSCSEG00000016868	ENSCSEG00000016831	krr1 (ENSCSEG00000016821) #29	ENSCSEG00000016804	ENSCSEG00000016798	ENSCSEG00000016769	dnajc2 (ENSCSEG00000016738)	psmc2 (ENSCSEG00000016710)	slc26a5 (ENSCSEG00000016687)
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT00940000179382	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000156038.b	ENSGT01030000237814	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00400000024636	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT00940000156207.b.c.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01060000248862	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28
Fugu	MODERN SPECIES	9	ENSTRUG00000021835	cand1 (ENSTRUG00000005935)	grip1 (ENSTRUG00000005225)	lsm8 (ENSTRUG00000030890)	SHANK3 (ENSTRUG00000004729)	ENSTRUG00000006978	ENSTRUG00000023034	NXPE3 (ENSTRUG00000004429)	ENSTRUG00000025991	ENSTRUG00000024768	apex1 (ENSTRUG00000004268)	osgep (ENSTRUG00000003877)	si:ch211-214j24.10 (ENSTRUG00000003852)	ENSTRUG00000027985	nav3 (ENSTRUG00000001974) #21	e2f7 (ENSTRUG00000001843) #22	csrp2 (ENSTRUG00000019675) #23	zdhhc17 (ENSTRUG00000001408) #24	ENSTRUG00000028097	OSBPL8 (ENSTRUG00000001140) #25	nap1l1 (ENSTRUG00000000910) #27	phlda1 (ENSTRUG00000028502) #28	ENSTRUG00000030645	krr1 (ENSTRUG00000030357) #29	cmah (ENSTRUG00000003756)	ENSTRUG00000022903	ENSTRUG00000030078	ENSTRUG00000021716	krr1 (ENSTRUG00000004380) #29	ENSTRUG00000004324	cmah (ENSTRUG00000029936)
Tetraodon	MODERN SPECIES	26	PURG (ENSTNIG00000001673)	ENSTNIG00000005105	ENSTNIG00000004925	pmpcb (ENSTNIG00000005107)	dnajc2 (ENSTNIG00000005108)	psmc2 (ENSTNIG00000005109)	slc26a5 (ENSTNIG00000005110)	mecp2 (ENSTNIG00000005114)	ENSTNIG00000005115	ENSTNIG00000005116	fxr2 (ENSTNIG00000005118)	haus4 (ENSTNIG00000005119)	dock11 (ENSTNIG00000005120)	ENSTNIG00000000661	ENSTNIG00000005122	e2f7 (ENSTNIG00000005126) #22	csrp2 (ENSTNIG00000005127) #23	zdhhc17 (ENSTNIG00000005128) #24	MORN4 (ENSTNIG00000005131)	hoga1 (ENSTNIG00000005132)	ENSTNIG00000005143	ENSTNIG00000001619	slc5a9 (ENSTNIG00000005144)	slc5a9 (ENSTNIG00000005145)	ENSTNIG00000005146	ENSTNIG00000005147	ENSTNIG00000005974	ENSTNIG00000005149	palm1b (ENSTNIG00000005153)	SLC1A3 (ENSTNIG00000005166)	ENSTNIG00000005167
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT00940000179382	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000156038.b	ENSGT01030000237814	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084
Ballan wrasse	MODERN SPECIES	335																e2f7 (ENSLBEG00000000921) #22	csrp2 (ENSLBEG00000000897) #23	zdhhc17 (ENSLBEG00000000831) #24	OSBPL8 (ENSLBEG00000000738) #25	nap1l1 (ENSLBEG00000000121) #27	phlda1 (ENSLBEG00000000095) #28	ENSLBEG00000000084	ENSLBEG00000026859	ENSLBEG00000026841	krr1 (ENSLBEG00000026823) #29	ENSLBEG00000026811 #30	cmah (ENSLBEG00000026801)
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT00940000179382	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000156038.b	ENSGT01030000237814	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT00400000022326.b.b.b	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	34	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT00400000022326.b.b.b	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000171263	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a.n	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000165853	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608
Large yellow croaker	MODERN SPECIES	491	ENSLCRG00005013556	LRRC4 (ENSLCRG00005013554)	snd1 (ENSLCRG00005011265)	tnni1d (ENSLCRG00005011250)	ENSLCRG00005023229	ENSLCRG00005023224	ENSLCRG00005023219	PARP11 (ENSLCRG00005023215)	ENSLCRG00005023208	tmtc2a (ENSLCRG00005023204) #8	mettl25 (ENSLCRG00005023200) #9	ccdc59 (ENSLCRG00005023199) #10	CRACR2A (ENSLCRG00005023198)	prmt8b (ENSLCRG00005023195)	ENSLCRG00005023193	e2f7 (ENSLCRG00005023191) #22	csrp2 (ENSLCRG00005023189) #23	zdhhc17 (ENSLCRG00005023186) #24	OSBPL8 (ENSLCRG00005023184) #25	nap1l1 (ENSLCRG00005023160) #27	phlda1 (ENSLCRG00005023148) #28	ENSLCRG00005023147	ENSLCRG00005023143	ENSLCRG00005023139	krr1 (ENSLCRG00005023105) #29	ENSLCRG00005023101	ENSLCRG00005023099	cmah (ENSLCRG00005023098)	ENSLCRG00005023095	kcnc2 (ENSLCRG00005023093) #34	phax (ENSLCRG00005023089)
Gilthead seabream	MODERN SPECIES	5	ANO4 (ENSSAUG00010011593)	NXPE3 (ENSSAUG00010011577)	NXPE3 (ENSSAUG00010011572)	NXPE3 (ENSSAUG00010011570)	ENSSAUG00010011569	ENSSAUG00010011568	selenoo2 (ENSSAUG00010011550)	ENSSAUG00010011546	apex1 (ENSSAUG00010011545)	osgep (ENSSAUG00010011500)	si:ch211-214j24.10 (ENSSAUG00010011497)	ENSSAUG00010011494	ENSSAUG00010011493	nav3 (ENSSAUG00010011459) #21	ENSSAUG00010026014	e2f7 (ENSSAUG00010026013) #22	ENSSAUG00010026011	csrp2 (ENSSAUG00010026009) #23	zdhhc17 (ENSSAUG00010025923) #24	ENSSAUG00010025920	OSBPL8 (ENSSAUG00010025607) #25	ENSSAUG00010025601	nap1l1 (ENSSAUG00010025555) #27	phlda1 (ENSSAUG00010025550) #28	ENSSAUG00010025546	ENSSAUG00010025542	krr1 (ENSSAUG00010025531) #29	GLIPR1 (ENSSAUG00010025528) #30	cmah (ENSSAUG00010025522)	ENSSAUG00010025519	kcnc2 (ENSSAUG00010025518) #34
Perciformes	ANCESTRAL SPECIES	18	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT00940000179382	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000156038.b	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.v	ENSGT00400000024636	ENSGT00950000182866.D.d.a.c.b.a.a.u	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT00940000179382	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441	ENSGT01020000230346.B
Lumpfish	MODERN SPECIES	15	gas2l3 (ENSCLMG00005010441)	TM7SF3 (ENSCLMG00005010433)	fgfr1op2 (ENSCLMG00005010431)	med21 (ENSCLMG00005010429)	stk38l (ENSCLMG00005010403)	BMAL2 (ENSCLMG00005010402)	ENSCLMG00005010401	ENSCLMG00005010398	apex1 (ENSCLMG00005010397)	osgep (ENSCLMG00005022950)	si:ch211-214j24.10 (ENSCLMG00005022945)	ENSCLMG00005022942	ENSCLMG00005022940	ENSCLMG00005022938	nav3 (ENSCLMG00005022936) #21	e2f7 (ENSCLMG00005022931) #22	ENSCLMG00005022928	ENSCLMG00005022926	ENSCLMG00005022925	csrp2 (ENSCLMG00005022924) #23	zdhhc17 (ENSCLMG00005022888) #24	OSBPL8 (ENSCLMG00005022845) #25	nap1l1 (ENSCLMG00005022822) #27	phlda1 (ENSCLMG00005022820) #28	ENSCLMG00005022819	ENSCLMG00005022818	krr1 (ENSCLMG00005022816) #29	GLIPR1 (ENSCLMG00005022815) #30	cmah (ENSCLMG00005022807)	ENSCLMG00005022802	kcnc2 (ENSCLMG00005022800) #34
Stickleback	MODERN SPECIES	3	ANO4 (ENSGACG00000019509)	NXPE3 (ENSGACG00000019508)	NXPE3 (ENSGACG00000019506)	ENSGACG00000019505	ENSGACG00000019504	apex1 (ENSGACG00000019497)	osgep (ENSGACG00000019496)	si:ch211-214j24.10 (ENSGACG00000019495)	ENSGACG00000019494	cmah (ENSGACG00000019490)	cmah (ENSGACG00000019485)	krr1 (ENSGACG00000019481) #29	ENSGACG00000019480	nav3 (ENSGACG00000019472) #21	ENSGACG00000019470	e2f7 (ENSGACG00000019468) #22	csrp2 (ENSGACG00000019467) #23	zdhhc17 (ENSGACG00000019463) #24	OSBPL8 (ENSGACG00000019461) #25	nap1l1 (ENSGACG00000019459) #27	phlda1 (ENSGACG00000019457) #28	ENSGACG00000019455	ENSGACG00000019453	ENSGACG00000019451	GLIPR1 (ENSGACG00000019447) #30	ENSGACG00000019445	kcnc2 (ENSGACG00000019441) #34	ENSGACG00000019440	phax (ENSGACG00000019437)	pmpcb (ENSGACG00000019422)	dnajc2 (ENSGACG00000019413)
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00940000156038.b	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608
Channel bull blenny	MODERN SPECIES	15	ENSCGOG00000020512	slc38a2 (ENSCGOG00000020534)	slc38a4 (ENSCGOG00000020984)	AMIGO2 (ENSCGOG00000022027)	ANO4 (ENSCGOG00000022036)	ENSCGOG00000022087	ENSCGOG00000022091	ENSCGOG00000022094	apex1 (ENSCGOG00000022098)	si:ch211-214j24.10 (ENSCGOG00000022099)	osgep (ENSCGOG00000022102)	ENSCGOG00000022212	ENSCGOG00000022218	nav3 (ENSCGOG00000022221) #21	ENSCGOG00000022224	e2f7 (ENSCGOG00000022225) #22	csrp2 (ENSCGOG00000022227) #23	zdhhc17 (ENSCGOG00000022269) #24	OSBPL8 (ENSCGOG00000022443) #25	nap1l1 (ENSCGOG00000022886) #27	phlda1 (ENSCGOG00000023013) #28	ENSCGOG00000023014	ENSCGOG00000023015	ENSCGOG00000023016	krr1 (ENSCGOG00000023022) #29	GLIPR1 (ENSCGOG00000023036) #30	cmah (ENSCGOG00000023040)	ENSCGOG00000023068	kcnc2 (ENSCGOG00000023070) #34	phax (ENSCGOG00000023073)	pmpcb (ENSCGOG00000023086)
Pike perch	MODERN SPECIES	20	ENSSLUG00000006153	nav3 (ENSSLUG00000006236) #21	ENSSLUG00000006816	ENSSLUG00000006911	ENSSLUG00000006924	ENSSLUG00000006935	ENSSLUG00000006948	ENSSLUG00000006957	ENSSLUG00000006962	ENSSLUG00000006970	ENSSLUG00000006982	ENSSLUG00000006990	ENSSLUG00000007003	ENSSLUG00000007016	ENSSLUG00000007045	ENSSLUG00000007063 #22	csrp2 (ENSSLUG00000007078) #23	zdhhc17 (ENSSLUG00000007177) #24	OSBPL8 (ENSSLUG00000007797) #25	nap1l1 (ENSSLUG00000008083) #27	phlda1 (ENSSLUG00000008541) #28	ENSSLUG00000008555	ENSSLUG00000008596	NXPE3 (ENSSLUG00000008605)	krr1 (ENSSLUG00000008617) #29	GLIPR1 (ENSSLUG00000008634) #30	cmah (ENSSLUG00000008672)	ENSSLUG00000009201	kcnc2 (ENSSLUG00000009211) #34	phax (ENSSLUG00000009220)	pmpcb (ENSSLUG00000009226)
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263533.b.b.b.a.a.a.b.a	ENSGT00940000179382	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000156038.b	ENSGT01030000237814	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836.l	ENSGT00940000164836.k	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000156038.b	ENSGT01030000237814	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000171110
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836.l	ENSGT00940000164836.k	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT01030000237814	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084
Aplocheiloidei	ANCESTRAL SPECIES	160						ENSGT00940000156207.b.c.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000252705	ENSGT01100000263533.b.b.b.a.a.a.b.a	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a.f	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28
Turquoise killifish	MODERN SPECIES	1610	ENSNFUG00015002914	apex1 (ENSNFUG00015002905)	osgep (ENSNFUG00015002896)	Nfu_g_1_011741 (ENSNFUG00015002883)	ENSNFUG00015002880	ENSNFUG00015002877	nav3 (ENSNFUG00015002338) #21	ENSNFUG00015002234	ENSNFUG00015002230	ENSNFUG00015002225	ENSNFUG00015002161	ENSNFUG00015002142	ENSNFUG00015002120	ENSNFUG00015002109	ENSNFUG00015002061	E2F7 (ENSNFUG00015002044) #22	CSRP2 (ENSNFUG00015002029) #23	ZDHHC17 (ENSNFUG00015001980) #24	CABZ01007893.1 (ENSNFUG00015001840) #25	ENSNFUG00015001817	ENSNFUG00015001815	NAP1L1 (ENSNFUG00015001702) #27	phlda1 (ENSNFUG00015001668) #28	kcnc2 (ENSNFUG00015001662) #34	ENSNFUG00015001660	PHAX (ENSNFUG00015001657)	pmpcb (ENSNFUG00015001346)	dnajc2 (ENSNFUG00015001233)	psmc2 (ENSNFUG00015001194)	SLC26A5 (ENSNFUG00015000843)	ENSNFUG00015000786
Mangrove rivulus	MODERN SPECIES	156	slc38a2 (ENSKMAG00000021340)	slc38a4 (ENSKMAG00000021317)	ENSKMAG00000021299	osgep (ENSKMAG00000021284)	ANO4 (ENSKMAG00000021213)	ENSKMAG00000021187	ENSKMAG00000021180	apex1 (ENSKMAG00000021171)	osgep (ENSKMAG00000021157)	si:ch211-214j24.10 (ENSKMAG00000021149)	ENSKMAG00000021134	ENSKMAG00000021124	nav3 (ENSKMAG00000020918) #21	ENSKMAG00000020844	ENSKMAG00000020834	e2f7 (ENSKMAG00000020815) #22	csrp2 (ENSKMAG00000020797) #23	zdhhc17 (ENSKMAG00000020737) #24	OSBPL8 (ENSKMAG00000020669) #25	ENSKMAG00000020622	nap1l1 (ENSKMAG00000020578) #27	phlda1 (ENSKMAG00000020556) #28
Cyprinodontoidei	ANCESTRAL SPECIES	20		ENSGT00950000182866.D.d.a.c.b.a.a.f	ENSGT00940000164836.l.a	ENSGT00940000164836.l.b	ENSGT00940000164836.k	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b.ab	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT01030000237814	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084
NAME_4	ANCESTRAL SPECIES	95			ENSGT00950000182866.D.d.a.c.b.a.a.f	ENSGT00940000164836.l.a.c	ENSGT00940000164836.l.a.d	ENSGT00940000164836.l.b	ENSGT00940000164836.k	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000168052	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000165853	ENSGT00390000010830.d	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084
Mummichog	MODERN SPECIES	2425														ENSFHEG00000014704 #21	nav3 (ENSFHEG00000014761) #21	e2f7 (ENSFHEG00000014790) #22	csrp2 (ENSFHEG00000014826) #23	zdhhc17 (ENSFHEG00000014897) #24	OSBPL8 (ENSFHEG00000014943) #25	ENSFHEG00000014963	nap1l1 (ENSFHEG00000015049) #27	ENSFHEG00000015060 #28	ENSFHEG00000015065	ENSFHEG00000015072	ENSFHEG00000015089	ENSFHEG00000015105	krr1 (ENSFHEG00000015185) #29	ENSFHEG00000015195	cmah (ENSFHEG00000015240)
Sheepshead minnow	MODERN SPECIES	284											ENSCVAG00000000638	ENSCVAG00000007163	ENSCVAG00000007181	ENSCVAG00000007199	ENSCVAG00000007982	e2f7 (ENSCVAG00000008019) #22	csrp2 (ENSCVAG00000008039) #23	zdhhc17 (ENSCVAG00000008052) #24	OSBPL8 (ENSCVAG00000008079) #25	ENSCVAG00000008088	nap1l1 (ENSCVAG00000008122) #27	phlda1 (ENSCVAG00000008139) #28	ENSCVAG00000008161	gas2l3 (ENSCVAG00000008174)	TM7SF3 (ENSCVAG00000008189)	fgfr1op2 (ENSCVAG00000008216)	med21 (ENSCVAG00000008236)	stk38l (ENSCVAG00000008285)	BMAL2 (ENSCVAG00000008294)	zgc:162331 (ENSCVAG00000008299)	slc13a4 (ENSCVAG00000008415)
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.e.b	ENSGT00950000182866.D.d.a.c.b.a.a.f	ENSGT00940000164836.l.a	ENSGT00940000164836.l.b	ENSGT00940000164836.k	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b.ab	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000168052	ENSGT00940000165334	ENSGT01030000237814	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34
Poecilia	ANCESTRAL SPECIES	28			ENSGT00950000182866.D.d.a.c.b.a.a.f	ENSGT00940000164836.l.a	ENSGT00940000164836.l.b	ENSGT00940000164836.k	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b.ab	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000168052	ENSGT00940000165334	ENSGT01030000237814	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727.j #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34
NAME_6	ANCESTRAL SPECIES	209			ENSGT00950000182866.D.d.a.c.b.a.a.f	ENSGT00940000164836.l.a	ENSGT00940000164836.l.b	ENSGT00940000164836.k	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b.ab	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT01030000237814	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727.j #30	ENSGT00940000160727.i #30
Amazon molly	MODERN SPECIES	527		ENSPFOG00000020200	ENSPFOG00000004578	ENSPFOG00000004563	NXPE3 (ENSPFOG00000004452)	ENSPFOG00000004427	ENSPFOG00000004420	ENSPFOG00000004353	ENSPFOG00000004244	ENSPFOG00000004206	apex1 (ENSPFOG00000004178)	osgep (ENSPFOG00000004083)	si:ch211-214j24.10 (ENSPFOG00000004046)	nav3 (ENSPFOG00000003407) #21	ENSPFOG00000003340	e2f7 (ENSPFOG00000003272) #22	csrp2 (ENSPFOG00000003225) #23	zdhhc17 (ENSPFOG00000003032) #24	OSBPL8 (ENSPFOG00000002829) #25	ENSPFOG00000020199	nap1l1 (ENSPFOG00000002488) #27	phlda1 (ENSPFOG00000020198) #28	ENSPFOG00000002475	ENSPFOG00000002435	ENSPFOG00000002428	ENSPFOG00000002422	krr1 (ENSPFOG00000002249) #29	GLIPR1 (ENSPFOG00000023089) #30	GLIPR1 (ENSPFOG00000002115) #30
Sailfin molly	MODERN SPECIES	545															ENSPLAG00000008542	e2f7 (ENSPLAG00000008611) #22	csrp2 (ENSPLAG00000008632) #23	zdhhc17 (ENSPLAG00000008681) #24	OSBPL8 (ENSPLAG00000008713) #25	ENSPLAG00000008734	nap1l1 (ENSPLAG00000008744) #27	phlda1 (ENSPLAG00000008756) #28	ENSPLAG00000008775	ENSPLAG00000008799	ENSPLAG00000008811	krr1 (ENSPLAG00000008839) #29	ENSPLAG00000008880 #30	ENSPLAG00000008892 #30
Guppy	MODERN SPECIES	454	ENSPREG00000014509	NXPE3 (ENSPREG00000014498)	ENSPREG00000014487	ENSPREG00000014471	ENSPREG00000014456	ENSPREG00000014429	zgc:173709 (ENSPREG00000014399)	SELENOO (ENSPREG00000014359)	ENSPREG00000014303	apex1 (ENSPREG00000014298)	osgep (ENSPREG00000014273)	si:ch211-214j24.10 (ENSPREG00000014266)	ENSPREG00000014264	nav3 (ENSPREG00000014206) #21	ENSPREG00000014030	e2f7 (ENSPREG00000014011) #22	csrp2 (ENSPREG00000013990) #23	zdhhc17 (ENSPREG00000013966) #24	OSBPL8 (ENSPREG00000013869) #25	ENSPREG00000013842	nap1l1 (ENSPREG00000013784) #27	ENSPREG00000013763	ENSPREG00000013746	krr1 (ENSPREG00000013706) #29	GLIPR1 (ENSPREG00000013690) #30	cmah (ENSPREG00000013659)	ENSPREG00000013635	kcnc2 (ENSPREG00000013614) #34	phax (ENSPREG00000013607)	pmpcb (ENSPREG00000013595)	dnajc2 (ENSPREG00000013574)
Platyfish	MODERN SPECIES	8	NXPE3 (ENSXMAG00000022068)	NXPE3 (ENSXMAG00000028858)	NXPE3 (ENSXMAG00000027145)	ENSXMAG00000027183	ENSXMAG00000006179	ENSXMAG00000024972	ENSXMAG00000024112	SELENOO (ENSXMAG00000006183)	ENSXMAG00000025951	apex1 (ENSXMAG00000006195)	osgep (ENSXMAG00000006199)	si:ch211-214j24.10 (ENSXMAG00000006212)	ENSXMAG00000022026	nav3 (ENSXMAG00000006213) #21	ENSXMAG00000006242	e2f7 (ENSXMAG00000006252) #22	csrp2 (ENSXMAG00000006257) #23	zdhhc17 (ENSXMAG00000006274) #24	OSBPL8 (ENSXMAG00000006300) #25	ENSXMAG00000027587	nap1l1 (ENSXMAG00000025006) #27	ENSXMAG00000021369	ENSXMAG00000006341	ENSXMAG00000026339	krr1 (ENSXMAG00000023624) #29	GLIPR1 (ENSXMAG00000006360) #30	cmah (ENSXMAG00000028056)	kcnc2 (ENSXMAG00000006387) #34	phax (ENSXMAG00000020204)	pmpcb (ENSXMAG00000026749)	dnajc2 (ENSXMAG00000006390)
Oryzias	ANCESTRAL SPECIES	41	ENSGT00940000156380	ENSGT00940000165013.a	ENSGT00940000153438.b	ENSGT00940000158848	ENSGT01100000263489.a.a.b.a.a.b.a.a.a.a.b.a.f.a	ENSGT00940000155728.p	ENSGT00510000048519.a	ENSGT00940000164836.l	ENSGT00400000022326.b.b.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B.c	ENSGT00390000009992	ENSGT01100000264896	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441	ENSGT01020000230346.B	ENSGT01070000253775.a.d.a.b.a	ENSGT01070000253775.a.d.a.a.a.b.g.b
Oryzias_b	ANCESTRAL SPECIES	60	ENSGT00940000165013.a	ENSGT00940000153438.b	ENSGT00940000158848	ENSGT01100000263489.a.b.a.b.b.a.b.b.b.b.a.b	ENSGT01100000263489.a.a.b.a.a.b.a.a.a.a.b.a.f.a	ENSGT00940000155728.p	ENSGT00510000048519.a	ENSGT00940000164836.l.c.a.b	ENSGT00400000022326.b.b.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B.c	ENSGT00390000009992	ENSGT01100000264896	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441	ENSGT01020000230346.B	ENSGT01070000253775.a.d.a.b.a	ENSGT01070000253775.a.d.a.a.a.b.g.b
Indian medaka	MODERN SPECIES	2	dera (ENSOMEG00000019181)	ENSOMEG00000019149	ENSOMEG00000019133	ENSOMEG00000019113	ENSOMEG00000019093	ENSOMEG00000019049	ENSOMEG00000018939	ENSOMEG00000018918	ENSOMEG00000018892	apex1 (ENSOMEG00000018876)	osgep (ENSOMEG00000018855)	si:ch211-214j24.10 (ENSOMEG00000018780)	ENSOMEG00000018738	nav3 (ENSOMEG00000018648) #21	ENSOMEG00000018220	e2f7 (ENSOMEG00000018204) #22	csrp2 (ENSOMEG00000018178) #23	zdhhc17 (ENSOMEG00000018152) #24	OSBPL8 (ENSOMEG00000018058) #25	nap1l1 (ENSOMEG00000017739) #27	nfil3-6 (ENSOMEG00000017641)	ENSOMEG00000017630	ENSOMEG00000017618	SLC44A2 (ENSOMEG00000017546)	gcdhb (ENSOMEG00000017444)	ENSOMEG00000000432	farsa (ENSOMEG00000017367)	ilf3b (ENSOMEG00000017273)	ptger1b (ENSOMEG00000017168)	ENSOMEG00000017155	slc26a3.1 (ENSOMEG00000017087)
Javanese ricefish	MODERN SPECIES	15	ENSOJAG00000008300	ENSOJAG00000008310	ENSOJAG00000008355	ENSOJAG00000008384	ENSOJAG00000008409	ssna1 (ENSOJAG00000008419)	ENSOJAG00000008426	ssna1 (ENSOJAG00000008439)	ENSOJAG00000008448	ENSOJAG00000008465	apex1 (ENSOJAG00000008491)	osgep (ENSOJAG00000008545)	si:ch211-214j24.10 (ENSOJAG00000008667)	ENSOJAG00000008691	ENSOJAG00000008890	e2f7 (ENSOJAG00000008931) #22	csrp2 (ENSOJAG00000008942) #23	OSBPL8 (ENSOJAG00000009108) #25	nap1l1 (ENSOJAG00000009318) #27	phlda1 (ENSOJAG00000009861) #28	ENSOJAG00000009899	ENSOJAG00000009931	ENSOJAG00000009953	ENSOJAG00000009967	kcnc2 (ENSOJAG00000009992) #34	phax (ENSOJAG00000010042)	pmpcb (ENSOJAG00000010051)	dnajc2 (ENSOJAG00000010397)	psmc2 (ENSOJAG00000011166)	slc26a5 (ENSOJAG00000011308)	slc26a3.1 (ENSOJAG00000011580)
Oryzias_a	ANCESTRAL SPECIES	15	ENSGT00940000165013.a	ENSGT00940000153438.b	ENSGT00940000158848	ENSGT01100000263489.a.a.b.a.a.b.a.a.a.a.b.a.f.a	ENSGT00940000155728.p	ENSGT00510000048519.a	ENSGT01100000263489.a.b.a.b.b.a.a.b.a.b.b.a.a.b.b.b	ENSGT00940000164836.l.e.a	ENSGT00400000022326.b.b.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B.c	ENSGT00390000009992	ENSGT01100000264896	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441	ENSGT01020000230346.B	ENSGT01070000253775.a.d.a.b.a	ENSGT01070000253775.a.d.a.a.a.b.g.b
Chinese medaka	MODERN SPECIES	466																e2f7 (ENSOSIG00000007680) #22	csrp2 (ENSOSIG00000007677) #23	zdhhc17 (ENSOSIG00000007334) #24
Japanese Medaka HdrR	MODERN SPECIES	15	ENSORLG00000027462	ENSORLG00000022861	ENSORLG00000024188	ENSORLG00000024156	ENSORLG00000012419	ENSORLG00000017658	ENSORLG00000012390	apex1 (ENSORLG00000012378)	ENSORLG00000028034	osgep (ENSORLG00000012365)	si:ch211-214j24.10 (ENSORLG00000012343)	ENSORLG00000028808	ENSORLG00000030251	nav3 (ENSORLG00000012335) #21	ENSORLG00000022005	e2f7 (ENSORLG00000012301) #22	csrp2 (ENSORLG00000012289) #23	zdhhc17 (ENSORLG00000012245) #24	ENSORLG00000026779	OSBPL8 (ENSORLG00000012195) #25	nap1l1 (ENSORLG00000012160) #27	ENSORLG00000026962	ENSORLG00000023043	ENSORLG00000025623	kcnc2 (ENSORLG00000024875) #34	phax (ENSORLG00000018473)	pmpcb (ENSORLG00000018466)	dnajc2 (ENSORLG00000018453)	psmc2 (ENSORLG00000018441)	slc26a5 (ENSORLG00000018413)	slc26a3.1 (ENSORLG00000012121)
Ovalentaria_B	ANCESTRAL SPECIES	29	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263533.b.b.b.a.a.a.b.a	ENSGT00940000179382	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608
Pomacentridae	ANCESTRAL SPECIES	65	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT00940000179382	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000160560.b.f.a.b.a.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000165853	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441
Pomacentridae_A	ANCESTRAL SPECIES	64	ENSGT00950000182866.D.d.a.c.b.a.a.c	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT00940000179382	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b	ENSGT00940000160560.b.f.a.b.a.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608	ENSGT00940000155441	ENSGT01020000230346.B
Amphiprion	ANCESTRAL SPECIES	63	ENSGT00940000164836.p	ENSGT00950000182866.D.d.a.c.b.a.a.c.a.a.b	ENSGT00940000164836.o	ENSGT01070000253760.b.b.a.a.c.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT00940000179382	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00940000181475	ENSGT00510000047886.b	ENSGT00940000160560.b.f.a.b.a.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00390000011084	ENSGT00940000156608.s	ENSGT00940000155441	ENSGT01020000230346.B
Clown anemonefish	MODERN SPECIES	612													ENSAOCG00000015300	ENSAOCG00000015286	ENSAOCG00000002056	e2f7 (ENSAOCG00000015259) #22	csrp2 (ENSAOCG00000015244) #23	zdhhc17 (ENSAOCG00000015211) #24	ENSAOCG00000015112
Orange clownfish	MODERN SPECIES	13	ENSAPEG00000021531	ENSAPEG00000021516	ENSAPEG00000021505	ENSAPEG00000021476	apex1 (ENSAPEG00000021453)	osgep (ENSAPEG00000021415)	si:ch211-214j24.10 (ENSAPEG00000021403)	ENSAPEG00000021383	ENSAPEG00000021351	ENSAPEG00000021336	nav3 (ENSAPEG00000021186) #21	ENSAPEG00000021157	ENSAPEG00000021144	ENSAPEG00000021090	ENSAPEG00000021053	e2f7 (ENSAPEG00000020994) #22	csrp2 (ENSAPEG00000020971) #23	zdhhc17 (ENSAPEG00000020859) #24	ENSAPEG00000020841	ENSAPEG00000020637	OSBPL8 (ENSAPEG00000020552) #25	nap1l1 (ENSAPEG00000020509) #27	phlda1 (ENSAPEG00000020497) #28	ENSAPEG00000020474	ENSAPEG00000020462	ENSAPEG00000020456	krr1 (ENSAPEG00000020418) #29	GLIPR1 (ENSAPEG00000020406) #30	ENSAPEG00000020371	kcnc2 (ENSAPEG00000020114) #34	phax (ENSAPEG00000020069)
Spiny chromis	MODERN SPECIES	2521													ENSAPOG00000011007	ENSAPOG00000011042	ENSAPOG00000011069	e2f7 (ENSAPOG00000000310) #22
Bicolor damselfish	MODERN SPECIES	2191													ENSSPAG00000012915	ENSSPAG00000012906	ENSSPAG00000012856	e2f7 (ENSSPAG00000012840) #22
Cichlidae	ANCESTRAL SPECIES	84					ENSGT00950000182866.D.d.a.c.b.a.a.a.b.b	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30
Midas cichlid	MODERN SPECIES	666		NXPE3 (ENSACIG00000010977)	ENSACIG00000010796	ENSACIG00000010757	ENSACIG00000010724	SELENOO (ENSACIG00000010681)	ENSACIG00000010667	si:dkey-14k9.3 (ENSACIG00000010662)	apex1 (ENSACIG00000010653)	osgep (ENSACIG00000010625)	si:ch211-214j24.10 (ENSACIG00000010613)	ENSACIG00000010604	ENSACIG00000010585	ENSACIG00000010580	nav3 (ENSACIG00000010477) #21	ENSACIG00000010460 #22	csrp2 (ENSACIG00000010442) #23	zdhhc17 (ENSACIG00000010397) #24	OSBPL8 (ENSACIG00000010355) #25	ENSACIG00000010326	nap1l1 (ENSACIG00000010302) #27	phlda1 (ENSACIG00000010291) #28
Pseudocrenilabrinae	ANCESTRAL SPECIES	36					ENSGT00950000182866.D.d.a.c.b.a.a.a.b.b	ENSGT00940000164836	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b.db.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000165853	ENSGT00940000158848	ENSGT00940000153438.b	ENSGT00940000153678.a.a	ENSGT00390000006760
Nile tilapia	MODERN SPECIES	8	nap1l1 (ENSONIG00000012048) #27	ENSONIG00000021025	OSBPL8 (ENSONIG00000012061) #25	ENSONIG00000033822	ENSONIG00000042406 #21	ENSONIG00000039965	ENSONIG00000021026	osgep (ENSONIG00000012084)	apex1 (ENSONIG00000012089)	ENSONIG00000012090	ENSONIG00000029119	SELENOO (ENSONIG00000012091)	ENSONIG00000012096	ENSONIG00000012076	ENSONIG00000009426	e2f7 (ENSONIG00000012070) #22	csrp2 (ENSONIG00000012066) #23	zdhhc17 (ENSONIG00000012065) #24	ENSONIG00000011795	CEP83 (ENSONIG00000011796)	hcfc2 (ENSONIG00000011800)	ELK3 (ENSONIG00000011804)	cdk17 (ENSONIG00000011805)	phyh (ENSONIG00000011808)	ucmaa (ENSONIG00000011810)	mcm10 (ENSONIG00000011811)	optn (ENSONIG00000011814)	ccdc3 (ENSONIG00000041799)	camk1da (ENSONIG00000011817)	cdc123 (ENSONIG00000042229)	nudt5 (ENSONIG00000011828)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	45					ENSGT00950000182866.D.d.a.c.b.a.a.a.b.b	ENSGT00940000164836	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00510000047886.b.db.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000165853	ENSGT00940000158848	ENSGT00940000153438.b	ENSGT00940000153678.a.a	ENSGT00390000006760
Haplochromini	ANCESTRAL SPECIES	50		ENSGT00950000182866.D.d.a.c.b.a.a.a.b.b	ENSGT00940000164836	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00940000171263	ENSGT00510000047886.b.db.a	ENSGT00510000047886.b.db.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000165853	ENSGT00940000158848	ENSGT00940000153438.b	ENSGT00940000153678.a.a	ENSGT00390000006760
Burton s mouthbrooder	MODERN SPECIES	596															ENSHBUG00000012936	e2f7 (ENSHBUG00000012528) #22	csrp2 (ENSHBUG00000012518) #23	zdhhc17 (ENSHBUG00000012488) #24	OSBPL8 (ENSHBUG00000000347) #25	ENSHBUG00000012362	nap1l1 (ENSHBUG00000012343) #27	phlda1 (ENSHBUG00000012320) #28	ENSHBUG00000012309	krr1 (ENSHBUG00000012262) #29	ENSHBUG00000012252	ipo8 (ENSHBUG00000012196)	ENSHBUG00000012107	dennd5b (ENSHBUG00000012030)
Haplochromini_A	ANCESTRAL SPECIES	57	ENSGT00950000182866.D.d.a.c.b.a.a.a.b.b	ENSGT00940000164836	ENSGT00990000205182.a	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00940000171263	ENSGT00510000047886.b.db.a	ENSGT00510000047886.b.db.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000165853	ENSGT00940000158848	ENSGT00940000153438.b	ENSGT00940000153678.a.a	ENSGT00390000006760
Haplochromini_B	ANCESTRAL SPECIES	62	ENSGT00990000205182.a	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263533.b.b.b.a.a.a.b.a	ENSGT00400000022326.b.b.b	ENSGT01060000248677	ENSGT00940000158014 #21	ENSGT00940000155849.h.b.b	ENSGT00940000171263	ENSGT00510000047886.b.db.a.a	ENSGT00510000047886.b.db.b.a	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT01040000240400.c.a.b.a.a.d.a.a.a	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000160727 #30	ENSGT00940000165853	ENSGT00940000158848	ENSGT00940000153438.b	ENSGT00940000153678.a.a	ENSGT00940000162903.b.h.a.b.b
Zebra mbuna	MODERN SPECIES	1099	SELENOO (ENSMZEG00005014225)	ENSMZEG00005014202	apex1 (ENSMZEG00005014187)	osgep (ENSMZEG00005014161)	si:ch211-214j24.10 (ENSMZEG00005014181)	ENSMZEG00005014144	ENSMZEG00005014122	ENSMZEG00005014118	nav3 (ENSMZEG00005014007) #21	net1 (ENSMZEG00005013972)	ENSMZEG00005013961	ENSMZEG00005013952	ENSMZEG00005010164	ENSMZEG00005010109	ENSMZEG00005008685	e2f7 (ENSMZEG00005008655) #22	csrp2 (ENSMZEG00005008640) #23	zdhhc17 (ENSMZEG00005008568) #24	OSBPL8 (ENSMZEG00005008515) #25	ENSMZEG00005008490	nap1l1 (ENSMZEG00005008460) #27	phlda1 (ENSMZEG00005008448) #28	ENSMZEG00005008442	ENSMZEG00005008415	ENSMZEG00005008397	ENSMZEG00005008377	ENSMZEG00005008358	ENSMZEG00005008331	ENSMZEG00005008315	krr1 (ENSMZEG00005008303) #29	ENSMZEG00005008295 #30
Eastern happy	MODERN SPECIES	8	si:ch211-214j24.10 (ENSACLG00000018365)	ENSACLG00000018350	ENSACLG00000018326	ENSACLG00000018320	nav3 (ENSACLG00000018218) #21	ENSACLG00000018185	ENSACLG00000018177	net1 (ENSACLG00000018084)	net1 (ENSACLG00000018036)	net1 (ENSACLG00000018012)	ENSACLG00000018002	ENSACLG00000017923	ENSACLG00000017909	ENSACLG00000017902	ENSACLG00000017848	e2f7 (ENSACLG00000017822) #22	csrp2 (ENSACLG00000017802) #23	zdhhc17 (ENSACLG00000017704) #24	ENSACLG00000017686	OSBPL8 (ENSACLG00000017090) #25	ENSACLG00000016937	nap1l1 (ENSACLG00000016114) #27	phlda1 (ENSACLG00000016062) #28	ENSACLG00000016043	ENSACLG00000016036	ENSACLG00000015969	ENSACLG00000015857	ENSACLG00000015804	ENSACLG00000015754	ENSACLG00000015695	ENSACLG00000015623
P. nyererei	MODERN SPECIES	417																e2f7 (ENSPNYG00000021344) #22	csrp2 (ENSPNYG00000021329) #23	zdhhc17 (ENSPNYG00000021307) #24	OSBPL8 (ENSPNYG00000021252) #25	ENSPNYG00000021229	nap1l1 (ENSPNYG00000020881) #27	phlda1 (ENSPNYG00000020853) #28	ENSPNYG00000020834	krr1 (ENSPNYG00000020809) #29	ENSPNYG00000020745	ipo8 (ENSPNYG00000020683)	ENSPNYG00000020657	dennd5b (ENSPNYG00000020574)	ttll12 (ENSPNYG00000020524)	SNX4 (ENSPNYG00000020502)	pnpla3 (ENSPNYG00000020493)
Lyretail cichlid	MODERN SPECIES	432	ENSNBRG00000005172	selenoo2 (ENSNBRG00000005216)	ENSNBRG00000005315	apex1 (ENSNBRG00000005334)	osgep (ENSNBRG00000005343)	si:ch211-214j24.10 (ENSNBRG00000005384)	ENSNBRG00000005406	ENSNBRG00000005423	ENSNBRG00000005432 #21	ENSNBRG00000005464 #21	ENSNBRG00000005497	ENSNBRG00000005611	ENSNBRG00000005817	ENSNBRG00000005827	ENSNBRG00000005846	ENSNBRG00000005860 #22	csrp2 (ENSNBRG00000005874) #23	zdhhc17 (ENSNBRG00000005888) #24	OSBPL8 (ENSNBRG00000005977) #25	ENSNBRG00000006381	nap1l1 (ENSNBRG00000006404) #27	phlda1 (ENSNBRG00000006436) #28	gtf2b (ENSNBRG00000006454)	ENSNBRG00000006503	ENSNBRG00000006513	krr1 (ENSNBRG00000006530) #29	ENSNBRG00000006577 #30	lypla2 (ENSNBRG00000006622)	ipo8 (ENSNBRG00000006642)	ENSNBRG00000006698	dennd5b (ENSNBRG00000006716)
Tiger tail seahorse	MODERN SPECIES	407	TM7SF3 (ENSHCOG00000010491)	gas2l3 (ENSHCOG00000010427)	arid2 (ENSHCOG00000010380)	ENSHCOG00000010029	slc38a2 (ENSHCOG00000010019)	slc38a4 (ENSHCOG00000010009)	ENSHCOG00000009989	ENSHCOG00000009970	apex1 (ENSHCOG00000009961)	osgep (ENSHCOG00000009941)	si:ch211-214j24.10 (ENSHCOG00000009918)	ENSHCOG00000009911	ENSHCOG00000009892	hcfc2 (ENSHCOG00000009807)	nav3 (ENSHCOG00000009786) #21	e2f7 (ENSHCOG00000009705) #22	csrp2 (ENSHCOG00000009680) #23	zdhhc17 (ENSHCOG00000009677) #24	ENSHCOG00000009641 #24	OSBPL8 (ENSHCOG00000009620) #25	nap1l1 (ENSHCOG00000009565) #27	phlda1 (ENSHCOG00000009514) #28	ENSHCOG00000009507	ENSHCOG00000009482	krr1 (ENSHCOG00000009468) #29	ENSHCOG00000009451	hspa14 (ENSHCOG00000009378)	prl2 (ENSHCOG00000009360)	rint1 (ENSHCOG00000009339)	nopchap1 (ENSHCOG00000009328)	SLC41A2 (ENSHCOG00000009312)
Pinecone sodierfish	MODERN SPECIES	15	NXPE3 (ENSMMDG00005023728)	ENSMMDG00005023725	ENSMMDG00005023722	SELENOO (ENSMMDG00005023719)	ENSMMDG00005023715	apex1 (ENSMMDG00005023711)	osgep (ENSMMDG00005023706)	ENSMMDG00005023703	ENSMMDG00005023700	ENSMMDG00005023697	nav3 (ENSMMDG00005023694) #21	ENSMMDG00005023689	ENSMMDG00005023687	ENSMMDG00005023684	ENSMMDG00005023681	ENSMMDG00005023678 #22	csrp2 (ENSMMDG00005023676) #23	zdhhc17 (ENSMMDG00005023670) #24	OSBPL8 (ENSMMDG00005023661) #25	nap1l1 (ENSMMDG00005023656) #27	phlda1 (ENSMMDG00005023652) #28	ENSMMDG00005023649	krr1 (ENSMMDG00005023625) #29	GLIPR1 (ENSMMDG00005023621) #30	cmah (ENSMMDG00005023620)	ENSMMDG00005023617	kcnc2 (ENSMMDG00005023615) #34	phax (ENSMMDG00005023614)	pmpcb (ENSMMDG00005023055)	dnajc2 (ENSMMDG00005022786)	psmc2 (ENSMMDG00005022722)
Cod	MODERN SPECIES	17	EDIL3 (ENSGMOG00000025048)	ENSGMOG00000009774	ENSGMOG00000032647	ENSGMOG00000017202	ENSGMOG00000017226	ENSGMOG00000026956	ENSGMOG00000031824	ENSGMOG00000017269	ENSGMOG00000030831	ENSGMOG00000002874	ENSGMOG00000013248	dmtf1 (ENSGMOG00000033129)	ENSGMOG00000025224	dclre1c (ENSGMOG00000016321)	ENSGMOG00000033866	e2f7 (ENSGMOG00000016169) #22	zdhhc17 (ENSGMOG00000006985) #24	OSBPL8 (ENSGMOG00000012772) #25	phlda1 (ENSGMOG00000002459) #28	ENSGMOG00000007144	ENSGMOG00000018046 #29	ENSGMOG00000018073	ENSGMOG00000018088	ENSGMOG00000022240	ENSGMOG00000002469 #27	PMPCB (ENSGMOG00000003425)	DNAJC2 (ENSGMOG00000003391)	PSMC2 (ENSGMOG00000003361)	SLC26A5 (ENSGMOG00000003319)	ENSGMOG00000024111	ENSGMOG00000022967
Protacanthopterygii	ANCESTRAL SPECIES	23					ENSGT00940000156680.b	ENSGT00990000203615.a.a.b	ENSGT01100000263519.A.b.b.a.a.c	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248862	ENSGT00940000158014 #21	ENSGT00940000171263	ENSGT00510000047886.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622 #25	ENSGT00940000153362.a #27	ENSGT00440000039564.b #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775 #29	ENSGT00940000165853	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00940000156608	ENSGT00940000155441	ENSGT01020000230346.B
Salmoninae	ANCESTRAL SPECIES	94						ENSGT00940000156680.b	ENSGT00990000203615.a.a.b	ENSGT00390000004237.q.b	ENSGT00940000162287.A.i.a.d.b.b	ENSGT00530000063540.b.d.a	ENSGT00940000153744.B	ENSGT00390000009992.c.b.b	ENSGT00940000171263.a	ENSGT00510000047886.b.j	ENSGT00940000171263.b	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b #24	ENSGT00940000156622.e.b.b #25	ENSGT00940000153362.a.i #27	ENSGT00440000039564.b.c #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775.i #29	ENSGT00390000018775.j #29	ENSGT00940000165853	ENSGT00390000010830	ENSGT00440000034107.b	ENSGT00940000157371 #34	ENSGT00940000156608	ENSGT00940000155441
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	3553												ENSHHUG00000037576	ENSHHUG00000037524	ENSHHUG00000037516 #22	ENSHHUG00000037513 #22	ENSHHUG00000037511 #22
Huchen	MODERN SPECIES	3553														ENSHHUG00000037576	ENSHHUG00000037524	ENSHHUG00000037516 #22	ENSHHUG00000037513 #22	ENSHHUG00000037511 #22
Huchen	MODERN SPECIES	3553													ENSHHUG00000037576	ENSHHUG00000037524	ENSHHUG00000037516 #22	ENSHHUG00000037513 #22	ENSHHUG00000037511 #22
Huchen	MODERN SPECIES	2965														ENSHHUG00000046393	ENSHHUG00000046385	e2f7 (ENSHHUG00000046381) #22
Salmoninae_a	ANCESTRAL SPECIES	145					ENSGT00940000157255.d	ENSGT00940000157255.c.b	ENSGT00940000163520.A.a.a.a.a.b.a	ENSGT01020000230394.e.a.a.a.a.b.t.a.a.b	ENSGT00940000156680.a.b	ENSGT00990000203615.a.a.b	ENSGT00390000004237.q.b	ENSGT00940000162287.A.i.a.d.b.b	ENSGT00530000063540.b.d.a	ENSGT00940000153744.B	ENSGT00390000009992.c.b.a	ENSGT00940000157713 #22	ENSGT00390000009992.c.a	ENSGT01100000263519.D.d	ENSGT01060000248862	ENSGT00940000158014.d.b.a.a #21	ENSGT00940000153216.a.a.c.a.o	ENSGT00940000153216.a.a.c.a.p	ENSGT00940000171263.a	ENSGT00510000047886.b.j.b.b	ENSGT00940000154980 #23	ENSGT00530000063074.b.b.l #24	ENSGT01100000264291	ENSGT00940000156622.e.a #25	ENSGT00940000153362.a.j #27	ENSGT00440000039564.b.d.a #28
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	334															ENSGT00510000047886.b.j.b.b	ENSGT00940000157713.g #22	ENSGT00440000039564.b.c.a #28	ENSGT00940000165334.q
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000096291	ENSSSAG00000096370	si:ch211-214j24.10 (ENSSSAG00000051713)	osgep (ENSSSAG00000117168)	ENSSSAG00000100131	ENSSSAG00000051726	ENSSSAG00000006548	NAV3 (ENSSSAG00000007789) #21	ENSSSAG00000058965	ENSSSAG00000009343	ENSSSAG00000010388	ENSSSAG00000051739	ENSSSAG00000009010	ENSSSAG00000107031	ENSSSAG00000088077	e2f7 (ENSSSAG00000092137) #22	csrp2 (ENSSSAG00000110745) #23	zdhhc17 (ENSSSAG00000111418) #24	ENSSSAG00000119617	ENSSSAG00000098637	ENSSSAG00000119822	OSBPL8 (ENSSSAG00000111761) #25	np1l1 (ENSSSAG00000009693) #27	phlda1 (ENSSSAG00000100559) #28	ENSSSAG00000006336	ENSSSAG00000048664 #29	cmah (ENSSSAG00000026588)	ENSSSAG00000029595	kcnc2 (ENSSSAG00000086899) #34	PMPCB (ENSSSAG00000002440)	DNAJC2 (ENSSSAG00000083476)
River trout	MODERN SPECIES	34	ENSSTUG00000044349	ENSSTUG00000044360	ENSSTUG00000044366	ENSSTUG00000044371	ENSSTUG00000044378	apex1 (ENSSTUG00000044403)	osgep (ENSSTUG00000044418)	si:ch211-214j24.10 (ENSSTUG00000044474)	ENSSTUG00000044486	ENSSTUG00000044496	nav3 (ENSSTUG00000044541) #21	ctrb.3 (ENSSTUG00000045161)	ENSSTUG00000045171	ENSSTUG00000045172	ENSSTUG00000045181	e2f7 (ENSSTUG00000045221) #22	ENSSTUG00000045249 #23	zdhhc17 (ENSSTUG00000045296) #24	OSBPL8 (ENSSTUG00000046271) #25	ENSSTUG00000046567	ENSSTUG00000046576	nap1l1 (ENSSTUG00000046626) #27	phlda1 (ENSSTUG00000047095) #28	ENSSTUG00000047099	ENSSTUG00000047138 #29	ENSSTUG00000047427	cmah (ENSSTUG00000047464)	ENSSTUG00000047523	kcnc2 (ENSSTUG00000047530) #34	pmpcb (ENSSTUG00000047569)	dnajc2 (ENSSTUG00000047970)
Salmo	ANCESTRAL SPECIES	113												ENSGT00940000171263.a	ENSGT00510000047886.b.j.a.b	ENSGT00510000047886.b.j.a.a	ENSGT00940000171263.b	ENSGT00940000157713.h #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b.k #24	ENSGT01010000224099.A	ENSGT00530000063074.b.b.l #24	ENSGT01100000264291	ENSGT00940000156622.e.a #25	ENSGT00940000153362.a.i #27	ENSGT00440000039564.b.c.b #28	ENSGT00940000165334.r	ENSGT00940000163632	ENSGT00390000018775.i #29	ENSGT00390000018775.j #29	ENSGT00940000165853	ENSGT00390000010830	ENSGT00440000034107.b
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000094843	ENSSSAG00000098982	ENSSSAG00000095463	ENSSSAG00000051606	ENSSSAG00000006669	apex1 (ENSSSAG00000006675)	ENSSSAG00000006708	si:ch211-214j24.10 (ENSSSAG00000006693)	ENSSSAG00000101917	ENSSSAG00000082769	ENSSSAG00000006606	NAV3 (ENSSSAG00000008009) #21	ENSSSAG00000051780	fel (ENSSSAG00000009266)	ENSSSAG00000008036	e2f7 (ENSSSAG00000008048) #22	ENSSSAG00000051824 #23	zdhhc17 (ENSSSAG00000008103) #24	ENSSSAG00000097351	OSBPL8 (ENSSSAG00000083919) #25	nap1l1 (ENSSSAG00000048017) #27	phlda1 (ENSSSAG00000110463) #28	ENSSSAG00000122074	ENSSSAG00000104674	krr1 (ENSSSAG00000010143) #29	glipr1a (ENSSSAG00000026095)	cmah (ENSSSAG00000052546)	KCNC2 (ENSSSAG00000086122) #34	pmpcb (ENSSSAG00000053474)	DNAJC2 (ENSSSAG00000089385)	psmc2 (ENSSSAG00000109546)
River trout	MODERN SPECIES	38	ENSSTUG00000003164	ENSSTUG00000003157	ENSSTUG00000003115	ENSSTUG00000003103	apex1 (ENSSTUG00000003069)	osgep (ENSSTUG00000002951)	si:ch211-214j24.10 (ENSSTUG00000002937)	ENSSTUG00000002915	ENSSTUG00000002906	ctrb.3 (ENSSTUG00000002899)	ENSSTUG00000002884	nav3 (ENSSTUG00000002461) #21	ENSSTUG00000002433	ENSSTUG00000002414	ENSSTUG00000002385	e2f7 (ENSSTUG00000002365) #22	csrp2 (ENSSTUG00000002341) #23	zdhhc17 (ENSSTUG00000002029) #24	ENSSTUG00000001992	OSBPL8 (ENSSTUG00000001990) #25	nap1l1 (ENSSTUG00000001850) #27	phlda1 (ENSSTUG00000001828) #28	ENSSTUG00000001818	ENSSTUG00000001240 #29	ENSSTUG00000000967	cmah (ENSSTUG00000044662)	ENSSTUG00000044622	kcnc2 (ENSSTUG00000044602) #34	pmpcb (ENSSTUG00000043996)	dnajc2 (ENSSTUG00000043300)	psmc2 (ENSSTUG00000043194)
Oncorhynchus	ANCESTRAL SPECIES	75	ENSGT01100000263520.a.a.a.b.a.a.a.a	ENSGT01100000263519.E.b.b.d.a.a	ENSGT00940000162287.A.i.a.d.b.b	ENSGT00530000063540.b.d.a	ENSGT00940000153744.B	ENSGT00390000009992.d	ENSGT01100000263519.D.c.a.a	ENSGT00940000158014.d.b.a.a.b #21	ENSGT00940000153216.a.a.c.a.o	ENSGT00940000153216.a.a.c.a.p	ENSGT00940000171263.a	ENSGT00510000047886.b.j.b.b.b	ENSGT00510000047886.b.j.b.a	ENSGT00940000171263.b	ENSGT00510000047886.b.j.b.b.a	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b.l #24	ENSGT01100000264291	ENSGT00940000156622.e.a #25	ENSGT00940000153362.a.j #27	ENSGT00440000039564.b.d.a #28	ENSGT00940000165334	ENSGT00940000163632	ENSGT00390000018775.i #29	ENSGT00940000165853	ENSGT00390000010830.v	ENSGT00440000034107.b	ENSGT00940000157371.r #34	ENSGT00940000156608	ENSGT00940000155441.ib
Oncorhynchus_a	ANCESTRAL SPECIES	238													ENSGT00510000047886.b.j.b.b.b	ENSGT00940000171263.a	ENSGT00510000047886.b.j.b.b.a	ENSGT00940000157713 #22	ENSGT00940000154980 #23	ENSGT00530000063074.b.b.l #24	ENSGT01100000264291	ENSGT00940000156622.e.a #25	ENSGT00940000153362.a.j #27	ENSGT00440000039564.b.d.a #28
Coho salmon	DUPLICATION
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	361														ENSOKIG00005039995	ENSOKIG00005039918	ENSOKIG00005039894 #22
Coho salmon	MODERN SPECIES	1401																e2f7 (ENSOKIG00005048719) #22	csrp2 (ENSOKIG00005048704) #23	zdhhc17 (ENSOKIG00005048639) #24	ENSOKIG00005048621	ENSOKIG00005048617	ENSOKIG00005048616	OSBPL8 (ENSOKIG00005047603) #25
Coho salmon	MODERN SPECIES	37	abcc9 (ENSOKIG00005033970)	kcnj8 (ENSOKIG00005033899)	ENSOKIG00005033810	ENSOKIG00005033736	ENSOKIG00005033693	apex1 (ENSOKIG00005033650)	osgep (ENSOKIG00005033540)	si:ch211-214j24.10 (ENSOKIG00005033523)	ENSOKIG00005033504	ctrb.3 (ENSOKIG00005033487)	ENSOKIG00005033445	NAV3 (ENSOKIG00005033208) #21	ENSOKIG00005033187	ENSOKIG00005033130	ENSOKIG00005033110	e2f7 (ENSOKIG00005033100) #22	ENSOKIG00005033065 #23	zdhhc17 (ENSOKIG00005032835) #24	ENSOKIG00005032794	OSBPL8 (ENSOKIG00005029653) #25	nap1l1 (ENSOKIG00005029319) #27	phlda1 (ENSOKIG00005029287) #28	ENSOKIG00005029251	ENSOKIG00005029239	ENSOKIG00005029230	ENSOKIG00005029209	krr1 (ENSOKIG00005029073) #29	ENSOKIG00005029034	cmah (ENSOKIG00005028359)	ENSOKIG00005028332	ENSOKIG00005028329
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000011074	ENSOMYG00000063776	apex1 (ENSOMYG00000010104)	ENSOMYG00000010671	si:ch211-214j24.10 (ENSOMYG00000010488)	ENSOMYG00000010475	ENSOMYG00000010470	ENSOMYG00000075699	ENSOMYG00000009574	ENSOMYG00000009747	NAV3 (ENSOMYG00000009703) #21	ENSOMYG00000050476	ENSOMYG00000011336	ENSOMYG00000060498	ENSOMYG00000011265	e2f7 (ENSOMYG00000017239) #22	ENSOMYG00000062544	crp (ENSOMYG00000017266) #23	zdhhc17 (ENSOMYG00000055187) #24	ENSOMYG00000065803	ENSOMYG00000048483	ENSOMYG00000018253 #25	nap1l1 (ENSOMYG00000060720) #27	phlda1 (ENSOMYG00000051941) #28	ENSOMYG00000063639	ENSOMYG00000054471	ENSOMYG00000018334	krr1 (ENSOMYG00000059025) #29	ENSOMYG00000072110	cmah (ENSOMYG00000073975)	ENSOMYG00000050418
Northern pike	MODERN SPECIES	22	cmasa (ENSELUG00000021496)	ENSELUG00000021180	ENSELUG00000021502	ENSELUG00000028336	ENSELUG00000021680	ENSELUG00000030213	ENSELUG00000029254	apex1 (ENSELUG00000021706)	osgep (ENSELUG00000021807)	si:ch211-214j24.10 (ENSELUG00000021832)	ENSELUG00000034654	ENSELUG00000021866	nav3 (ENSELUG00000022160) #21	ENSELUG00000021903	KCNJ1 (ENSELUG00000000947)	e2f7 (ENSELUG00000000949) #22	csrp2 (ENSELUG00000022210) #23	zdhhc17 (ENSELUG00000022286) #24	OSBPL8 (ENSELUG00000022417) #25	nap1l1 (ENSELUG00000022504) #27	phlda1 (ENSELUG00000022531) #28	ENSELUG00000026580	ENSELUG00000022547	ENSELUG00000022579	ENSELUG00000022591	krr1 (ENSELUG00000022632) #29	GPRL1 (ENSELUG00000028567)	ENSELUG00000022760	kcnc2 (ENSELUG00000022814) #34	ENSELUG00000029131	pmpcb (ENSELUG00000022882)
Spotted gar	MODERN SPECIES	674	mettl25 (ENSLOCG00000016327) #9	ccdc59 (ENSLOCG00000016324) #10	ENSLOCG00000016320	ppfia2 (ENSLOCG00000016312) #11	ACSS3 (ENSLOCG00000016308) #12	lin7a (ENSLOCG00000016303) #13	ENSLOCG00000016302 ##14	PTPRQ (ENSLOCG00000016300) #16	OTOGL (ENSLOCG00000016290) #17	rps16 (ENSLOCG00000016289)	ppp1r12a (ENSLOCG00000016288) #18	pawr (ENSLOCG00000017914) #19	pawr (ENSLOCG00000016287) #19	SYT1 (ENSLOCG00000016283) #20	nav3 (ENSLOCG00000016281) #21	e2f7 (ENSLOCG00000016279) #22	csrp2 (ENSLOCG00000016278) #23	zdhhc17 (ENSLOCG00000016277) #24	OSBPL8 (ENSLOCG00000016275) #25	BBS10 (ENSLOCG00000016274) #26	nap1l1 (ENSLOCG00000016269) #27	ENSLOCG00000016266	ENSLOCG00000016264	krr1 (ENSLOCG00000016262) #29	ENSLOCG00000016261	ENSLOCG00000016259	CAPS2 (ENSLOCG00000016256) #33	kcnc2 (ENSLOCG00000016255) #34	TRHDE (ENSLOCG00000016252) #37	tph2 (ENSLOCG00000016249)	tbc1d15 (ENSLOCG00000016247)
Reedfish	MODERN SPECIES		sinhcaf (ENSECRG00000001270)	caprin2 (ENSECRG00000001303)	ipo8 (ENSECRG00000001352)	TMTC1 (ENSECRG00000001409)	ENSECRG00000001451	kxd1 (ENSECRG00000001490)	ergic2 (ENSECRG00000001512)	si:dkey-97m3.1 (ENSECRG00000001533)	ENSECRG00000001550	ENSECRG00000001566	ENSECRG00000001578	ENSECRG00000001587	ENSECRG00000001592	ENSECRG00000001695	ENSECRG00000002084	e2f7 (ENSECRG00000002121) #22	csrp2 (ENSECRG00000002174) #23	zdhhc17 (ENSECRG00000002226) #24	OSBPL8 (ENSECRG00000002280) #25	ENSECRG00000002331	BBS10 (ENSECRG00000002341) #26	nap1l1 (ENSECRG00000002405) #27	ENSECRG00000002511	phlda1 (ENSECRG00000002523) #28	ENSECRG00000002537	ENSECRG00000002552	ENSECRG00000002569	krr1 (ENSECRG00000002585) #29	ENSECRG00000002615	CAPS2 (ENSECRG00000002625) #33	ENSECRG00000002641 #34
Elephant shark	MODERN SPECIES	1524	gnptab (ENSCMIG00000011481)	DRAM1 (ENSCMIG00000011465)	washc3 (ENSCMIG00000011463)	nup37 (ENSCMIG00000011451)	parpbp (ENSCMIG00000011442)	IGF1 (ENSCMIG00000011437)	th2 (ENSCMIG00000011400)	pah (ENSCMIG00000011328)	ASCL1 (ENSCMIG00000011305)	scyl2 (ENSCMIG00000011280)	DEPDC4 (ENSCMIG00000011260)	ppp1r12a (ENSCMIG00000011246) #18	PAWR (ENSCMIG00000011235) #19	syt1a (ENSCMIG00000011214) #20	nav3 (ENSCMIG00000011099) #21	ENSCMIG00000011059 #22	zdhhc17 (ENSCMIG00000011045) #24	OSBPL8 (ENSCMIG00000010624) #25	nap1l1 (ENSCMIG00000010401) #27	phlda1 (ENSCMIG00000010385) #28	ENSCMIG00000010380	krr1 (ENSCMIG00000010336) #29	ENSCMIG00000010315	ENSCMIG00000010311	ENSCMIG00000010308	CAPS2 (ENSCMIG00000010295) #33	zgc:103499 (ENSCMIG00000010288)	cep290 (ENSCMIG00000010186)	TMTC3 (ENSCMIG00000010121)	ENSCMIG00000010109	dusp6 (ENSCMIG00000010105)
Cyclostomata	ANCESTRAL SPECIES	734																ENSGT00940000157713 #22	ENSGT00940000154980 #23
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	388																ENSPMAG00000001858 #22	ENSPMAG00000001862 #23	ENSPMAG00000001871	srsf3b (ENSPMAG00000001928)	ergic2 (ENSPMAG00000001939)
Lamprey	MODERN SPECIES	4932																ENSPMAG00000007204 #22