Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00950000183104.A.a.a	ENSGT00940000161225	ENSGT00940000157693	ENSGT00510000048988	ENSGT00390000003015 #7	ENSGT00620000088018.h #8	ENSGT00390000014984 #9	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #11	ENSGT00940000160928	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00390000007816 #26	ENSGT00390000000654 #27	ENSGT00950000182834.C #29	ENSGT00390000004248 #28	ENSGT00390000014577.b #30	ENSGT00940000160362 #31	ENSGT00940000154436.a #33	ENSGT00940000154436.b #34	ENSGT01100000264574 #35	ENSGT00940000157218.C #36	ENSGT00950000183053.A #37	ENSGT00940000161401
Naked mole-rat female	MODERN SPECIES	26	TMEM125 (ENSHGLG00000003453) #7	CFAP57 (ENSHGLG00000002959) #8	EBNA1BP2 (ENSHGLG00000002849) #9	ENSHGLG00000042997 #10	ENSHGLG00000050288 #11	ENSHGLG00000035461 #12	ENSHGLG00000003737 #13	ENSHGLG00000019963 #14	ENSHGLG00000048449 #15	SLC2A1 (ENSHGLG00000002559) #16	ENSHGLG00000002421 #17	ERMAP (ENSHGLG00000041316) #18	CCDC23 (ENSHGLG00000039695) #19	ENSHGLG00000019496 #20	ENSHGLG00000019491 #21	P3H1 (ENSHGLG00000019499) #22	CLDN19 (ENSHGLG00000042448) #23	ENSHGLG00000019595 #24	PPIH (ENSHGLG00000002085) #25	CCDC30 (ENSHGLG00000001543) #26	ENSHGLG00000038638 #27	ZMYND12 (ENSHGLG00000001119) #28	PPCS (ENSHGLG00000001315) #29	RIMKLA (ENSHGLG00000006347) #30	FOXJ3 (ENSHGLG00000003548) #31	ENSHGLG00000045938 #32	GUCA2A (ENSHGLG00000038174) #33	GUCA2B (ENSHGLG00000005936) #34	ENSHGLG00000036409 #35	HIVEP3 (ENSHGLG00000004497) #36	EDN2 (ENSHGLG00000049667) #37
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT01050000244838.H.d	ENSGT00950000183104.A.a.a	ENSGT00940000161225	ENSGT00940000157693	ENSGT00510000048988	ENSGT00390000003015 #7	ENSGT00620000088018.h #8	ENSGT00390000014984 #9	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #11	ENSGT00940000160928	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #29	ENSGT00390000004248 #28	ENSGT00390000014577.b #30	ENSGT00940000160362 #31	ENSGT00940000154436.a #33	ENSGT00940000154436.b #34	ENSGT00940000157218.C #36	ENSGT00950000183053.A #37	ENSGT00940000161401	ENSGT00940000157999	ENSGT00410000025651.B
Hystricomorpha_b	ANCESTRAL SPECIES	90	ENSGT01050000244838.H.d	ENSGT00950000183104.A.a.a	ENSGT00940000161225	ENSGT00940000157693	ENSGT00510000048988	ENSGT00390000003015 #7	ENSGT00620000088018.h #8	ENSGT00390000014984 #9	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #11	ENSGT00940000160928	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #29	ENSGT00390000004248 #28	ENSGT00390000014577.b #30	ENSGT00940000160362 #31	ENSGT00940000154436.a #33	ENSGT00940000154436.b #34	ENSGT00940000157218.C #36	ENSGT00950000183053.A #37	ENSGT00940000161401	ENSGT00940000157999	ENSGT00410000025651.B
Long-tailed chinchilla	MODERN SPECIES	244	ELOVL1 (ENSCLAG00000005835)	CDC20 (ENSCLAG00000005417)	MPL (ENSCLAG00000005179)	TIE1 (ENSCLAG00000004371)	C1orf210 (ENSCLAG00000003472)	TMEM125 (ENSCLAG00000003252) #7	CFAP57 (ENSCLAG00000002618) #8	EBNA1BP2 (ENSCLAG00000002547) #9	ENSCLAG00000017559 #11	ENSCLAG00000002144	SLC2A1 (ENSCLAG00000002106) #16	ZNF691 (ENSCLAG00000002021) #17	SVBP (ENSCLAG00000003001) #19	ENSCLAG00000002885 #20	C1orf50 (ENSCLAG00000002818) #21	P3H1 (ENSCLAG00000002493) #22	CLDN19 (ENSCLAG00000002321) #23	ENSCLAG00000002253 #24	PPIH (ENSCLAG00000002063) #25	CCDC30 (ENSCLAG00000004571) #26	ENSCLAG00000004515	PPCS (ENSCLAG00000004488) #29	ZMYND12 (ENSCLAG00000004415) #28	RIMKLA (ENSCLAG00000004183) #30	FOXJ3 (ENSCLAG00000004107) #31	GUCA2A (ENSCLAG00000003499) #33	GUCA2B (ENSCLAG00000003462) #34	HIVEP3 (ENSCLAG00000003048) #36	EDN2 (ENSCLAG00000002304) #37	FOXO6 (ENSCLAG00000002214)	ENSCLAG00000002113
Degu	MODERN SPECIES	286								ENSODEG00000003794	SLC2A1 (ENSODEG00000003831) #16	ENSODEG00000003864	ENSODEG00000019202 #17	SVBP (ENSODEG00000003888) #19	ENSODEG00000001409 #20	C1orf50 (ENSODEG00000001430) #21	ENSODEG00000018684	P3H1 (ENSODEG00000001470) #22	CLDN19 (ENSODEG00000001571) #23	ENSODEG00000001592 ##24	ENSODEG00000001627 #25	ENSODEG00000001693 #26	PPCS (ENSODEG00000001735) #29	ZMYND12 (ENSODEG00000001753) #28	RIMKLA (ENSODEG00000001770) #30	ENSODEG00000001782	FOXJ3 (ENSODEG00000001809) #31	GUCA2A (ENSODEG00000001820) #33	GUCA2B (ENSODEG00000001838) #34	ENSODEG00000018717	HIVEP3 (ENSODEG00000001881) #36	EDN2 (ENSODEG00000001944) #37	FOXO6 (ENSODEG00000001967)
Guinea pig	MODERN SPECIES	133	MPL (ENSCPOG00000006086)	TIE1 (ENSCPOG00000006080)	C1orf210 (ENSCPOG00000034493)	TMEM125 (ENSCPOG00000039580) #7	CFAP57 (ENSCPOG00000007489) #8	EBNA1BP2 (ENSCPOG00000005187) #9	ENSCPOG00000033534 #11	ENSCPOG00000026850 ##15	ENSCPOG00000008911 #12	ENSCPOG00000035738 #15	SLC2A1 (ENSCPOG00000000635) #16	ZNF691 (ENSCPOG00000010765) #17	SVBP (ENSCPOG00000033208) #19	ENSCPOG00000027098 #20	C1orf50 (ENSCPOG00000039943) #21	P3H1 (ENSCPOG00000021271) #22	CLDN19 (ENSCPOG00000039124) #23	ENSCPOG00000010888 #24	PPIH (ENSCPOG00000008214) #25	ENSCPOG00000001391 #26	PPCS (ENSCPOG00000003240) #29	ZMYND12 (ENSCPOG00000012992) #28	RIMKLA (ENSCPOG00000005184) #30	HPDL (ENSCPOG00000019649)	MUTYH (ENSCPOG00000012452)	TOE1 (ENSCPOG00000036595)	ENSCPOG00000033680	TESK2 (ENSCPOG00000012459)	MMACHC (ENSCPOG00000014136)	PRDX1 (ENSCPOG00000014137)	AKR1A1 (ENSCPOG00000012718)