Murinae	ANCESTRAL SPECIES	2	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b.d #9	ENSGT01090000260044.A.a.b.a.b.c.b #13	ENSGT01090000260044.A.a.b.a.b.c.a #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #21	ENSGT00390000003084 #20	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721.db.a ##25	ENSGT00700000105447	ENSGT00940000154721.db.b #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #31	ENSGT00940000154436.a #32	ENSGT00940000154436.b #33	ENSGT00940000157218.C #34	ENSGT00950000183053.A #36	ENSGT00940000161401 #37
Mus	ANCESTRAL SPECIES	3	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b.d #9	ENSGT01090000260044.A.a.b.a.b.c.b #13	ENSGT01090000260044.A.a.b.a.b.c.a.a.a #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #21	ENSGT00390000003084 #20	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721.db.b #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00530000064266 #30	ENSGT00940000160362 #31	ENSGT00940000154436.a #32	ENSGT00940000154436.b #33	ENSGT00940000157218.C #34	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999
Mus_A	ANCESTRAL SPECIES	3	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b.d #9	ENSGT01090000260044.A.a.b.a.b.c.b #13	ENSGT01090000260044.A.a.b.a.b.c.a.a.a #14	ENSGT01090000260044.A.a.b.a.b.c.a.a.b.b.a.b ##14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #21	ENSGT00390000003084 #20	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721.db.b #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00530000064266 #30	ENSGT00940000160362 #31	ENSGT00940000154436.a #32	ENSGT00940000154436.b #33	ENSGT00940000157218.C #34	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b.c.a.a.b.b.a.a ##14	ENSGT01090000260044.A.a.b.a.b.c.a.a.b.b.a.b ##14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #21	ENSGT00390000003084 #20	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721.db.b #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00530000064266 #30	ENSGT00940000160362 #31	ENSGT00940000154436.a #32	ENSGT00940000154436.b #33	ENSGT00940000157218.C #34	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999
Mouse	MODERN SPECIES	13	Or10ak14 (ENSMUSG00000095218) #7	Or10ak13 (ENSMUSG00000111159) #8	Or10ak12 (ENSMUSG00000066061) #9	Or10ak11 (ENSMUSG00000110947) #10	Or10ak9 (ENSMUSG00000073769) #11	Or10ak16 (ENSMUSG00000073768) #12	Or10ak8 (ENSMUSG00000096705) #13	Or10ak7 (ENSMUSG00000111259) #14	Lao1 (ENSMUSG00000024903) #15	Slc2a1 (ENSMUSG00000028645) #16	Zfp691 (ENSMUSG00000045268) #17	Ermap (ENSMUSG00000028644) #18	Svbp (ENSMUSG00000028643) #19	AU022252 (ENSMUSG00000078584) #20	Tmem269 (ENSMUSG00000028642) #21	P3h1 (ENSMUSG00000028641) #22	Cldn19 (ENSMUSG00000066058) #23	Ybx1 (ENSMUSG00000028639) #24	Ppih (ENSMUSG00000060288) #25	Ccdc30 (ENSMUSG00000028637) #26	Ppcs (ENSMUSG00000028636) #27	Zmynd12 (ENSMUSG00000070806) #28	Rimkla (ENSMUSG00000048899) #29	Frg2f1 (ENSMUSG00000087385) #30	Foxj3 (ENSMUSG00000032998) #31	Guca2a (ENSMUSG00000023247) #32	Guca2b (ENSMUSG00000032978) #33	Hivep3 (ENSMUSG00000028634) #34	Gm55960 (ENSMUSG00000115115) #35	Edn2 (ENSMUSG00000028635) #36	Foxo6 (ENSMUSG00000052135) #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b.c.a.a.b.b.a.a ##14	ENSGT01090000260044.A.a.b.a.b.c.a.a.b.b.a.b ##14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #21	ENSGT00390000003084 #20	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721.db.b #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00530000064266 #30	ENSGT00940000160362 #31	ENSGT00940000154436.a #32	ENSGT00940000154436.b #33	ENSGT00940000157218.C #34	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999
spretus	MODERN SPECIES	13	Or13p3 (MGP_SPRETEiJ_G0027356) ##14	Or13p8 (MGP_SPRETEiJ_G0027357) ##14	Or13p5 (MGP_SPRETEiJ_G0027358) ##14	MGP_SPRETEiJ_G0027359 ##14	MGP_SPRETEiJ_G0027360 ##14	MGP_SPRETEiJ_G0027361 ##14	MGP_SPRETEiJ_G0027363 ##14	MGP_SPRETEiJ_G0027362 ##14	Lao1 (MGP_SPRETEiJ_G0027364) #15	Slc2a1 (MGP_SPRETEiJ_G0027365) #16	Zfp691 (MGP_SPRETEiJ_G0027366) #17	Ermap (MGP_SPRETEiJ_G0027367) #18	Svbp (MGP_SPRETEiJ_G0027368) #19	AU022252 (MGP_SPRETEiJ_G0027369) #20	Tmem269 (MGP_SPRETEiJ_G0027370) #21	P3h1 (MGP_SPRETEiJ_G0027371) #22	Cldn19 (MGP_SPRETEiJ_G0027372) #23	Ybx1 (MGP_SPRETEiJ_G0027373) #24	Ppih (MGP_SPRETEiJ_G0027374) #25	MGP_SPRETEiJ_G0027375 #26	Ppcs (MGP_SPRETEiJ_G0027376) #27	Zmynd12 (MGP_SPRETEiJ_G0027377) #28	Rimkla (MGP_SPRETEiJ_G0027378) #29	Frg2f1 (MGP_SPRETEiJ_G0027379) #30	Foxj3 (MGP_SPRETEiJ_G0027380) #31	Guca2a (MGP_SPRETEiJ_G0027381) #32	Guca2b (MGP_SPRETEiJ_G0027382) #33	Hivep3 (MGP_SPRETEiJ_G0027383) #34	Edn2 (MGP_SPRETEiJ_G0027384) #36	Foxo6 (MGP_SPRETEiJ_G0027385) #37	Scmh1 (MGP_SPRETEiJ_G0027386)
Steppe mouse	MODERN SPECIES	3192							ENSMSIG00000011281 #13	Or10ak7 (ENSMSIG00000011277) #14	Lao1 (ENSMSIG00000011267) #15	Slc2a1 (ENSMSIG00000011247) #16	Zfp691 (ENSMSIG00000011235) #17	Ermap (ENSMSIG00000011202) #18	Svbp (ENSMSIG00000011169) #19	Tmem269 (ENSMSIG00000011160) #21	AU022252 (ENSMSIG00000011139) #20	ENSMSIG00000011133 #22	Cldn19 (ENSMSIG00000011084) #23	Ybx1 (ENSMSIG00000011043) #24	ENSMSIG00000011024	Ppih (ENSMSIG00000010898) #25	ENSMSIG00000010856	Ccdc30 (ENSMSIG00000010771) #26	Ppcs (ENSMSIG00000010759) #27	Zmynd12 (ENSMSIG00000010735) #28	Rimkla (ENSMSIG00000010726) #29	ENSMSIG00000010718	Frg2f1 (ENSMSIG00000010706) #30	ENSMSIG00000010690	Foxj3 (ENSMSIG00000010593) #31	ENSMSIG00000010554 #32	Guca2b (ENSMSIG00000010523) #33
Ryukyu mouse	MODERN SPECIES	13	Tmem125 (MGP_CAROLIEiJ_G0026379)	Cfap57 (MGP_CAROLIEiJ_G0026380)	Ebna1bp2 (MGP_CAROLIEiJ_G0026381)	MGP_CAROLIEiJ_G0026382 ##14	MGP_CAROLIEiJ_G0026383 ##14	MGP_CAROLIEiJ_G0026384 ##14	MGP_CAROLIEiJ_G0026385 ##14	MGP_CAROLIEiJ_G0026386 ##14	Lao1 (MGP_CAROLIEiJ_G0026387) #15	Slc2a1 (MGP_CAROLIEiJ_G0026388) #16	Zfp691 (MGP_CAROLIEiJ_G0026389) #17	Ermap (MGP_CAROLIEiJ_G0026390) #18	Svbp (MGP_CAROLIEiJ_G0026391) #19	AU022252 (MGP_CAROLIEiJ_G0026392) #20	Tmem269 (MGP_CAROLIEiJ_G0026393) #21	P3h1 (MGP_CAROLIEiJ_G0026394) #22	Cldn19 (MGP_CAROLIEiJ_G0026395) #23	Ybx1 (MGP_CAROLIEiJ_G0026396) #24	Ppih (MGP_CAROLIEiJ_G0026397) #25	MGP_CAROLIEiJ_G0026398 #26	Ppcs (MGP_CAROLIEiJ_G0026399) #27	Zmynd12 (MGP_CAROLIEiJ_G0026400) #28	Rimkla (MGP_CAROLIEiJ_G0026401) #29	Frg2f1 (MGP_CAROLIEiJ_G0026402) #30	Foxj3 (MGP_CAROLIEiJ_G0026403) #31	Guca2a (MGP_CAROLIEiJ_G0026404) #32	Guca2b (MGP_CAROLIEiJ_G0026405) #33	Hivep3 (MGP_CAROLIEiJ_G0026406) #34	Edn2 (MGP_CAROLIEiJ_G0026407) #36	Foxo6 (MGP_CAROLIEiJ_G0026408) #37	Scmh1 (MGP_CAROLIEiJ_G0026409)
Shrew mouse	MODERN SPECIES	19	Tie1 (MGP_PahariEiJ_G0028708)	2610528J11Rik (MGP_PahariEiJ_G0028709)	Tmem125 (MGP_PahariEiJ_G0028710)	Cfap57 (MGP_PahariEiJ_G0028711)	Ebna1bp2 (MGP_PahariEiJ_G0028712)	MGP_PahariEiJ_G0028713 ##14	MGP_PahariEiJ_G0028714 ##14	MGP_PahariEiJ_G0028715 ##14	Lao1 (MGP_PahariEiJ_G0028716) #15	Slc2a1 (MGP_PahariEiJ_G0028717) #16	Zfp691 (MGP_PahariEiJ_G0028718) #17	Ermap (MGP_PahariEiJ_G0028719) #18	Svbp (MGP_PahariEiJ_G0028720) #19	Tmem269 (MGP_PahariEiJ_G0028721) #21	MGP_PahariEiJ_G0028722 #20	P3h1 (MGP_PahariEiJ_G0028723) #22	Cldn19 (MGP_PahariEiJ_G0028724) #23	Ybx1 (MGP_PahariEiJ_G0028725) #24	MGP_PahariEiJ_G0028726 ##25	MGP_PahariEiJ_G0028727 #26	Ppcs (MGP_PahariEiJ_G0028728) #27	Zmynd12 (MGP_PahariEiJ_G0028729) #28	Rimkla (MGP_PahariEiJ_G0028730) #29	MGP_PahariEiJ_G0028731 #30	Foxj3 (MGP_PahariEiJ_G0028732) #31	Guca2a (MGP_PahariEiJ_G0028733) #32	MGP_PahariEiJ_G0028734 #33	Hivep3 (MGP_PahariEiJ_G0028735) #34	Edn2 (MGP_PahariEiJ_G0028736) #36	Foxo6 (MGP_PahariEiJ_G0028737) #37	Scmh1 (MGP_PahariEiJ_G0028738)
Rat	MODERN SPECIES	15	Olfr1330-ps1 (ENSRNOG00000068591) #13	Or10ak11 (ENSRNOG00000063479) #13	Or10ak7b (ENSRNOG00000067801) #14	Or10ak7f (ENSRNOG00000063242) #14	Or10ak13 (ENSRNOG00000066045) #14	ENSRNOG00000063399 #14	Or10ak7 (ENSRNOG00000067935) #14	Lao1 (ENSRNOG00000007232) #15	Ubb-ps1 (ENSRNOG00000069384)	Slc2a1 (ENSRNOG00000007284) #16	Zfp691 (ENSRNOG00000007398) #17	Ermap (ENSRNOG00000000335) #18	Svbp (ENSRNOG00000007404) #19	Tmem269 (ENSRNOG00000006658) #21	RGD1564804 (ENSRNOG00000027455) #20	P3h1 (ENSRNOG00000053991) #22	Cldn19 (ENSRNOG00000007922) #23	Ybx1 (ENSRNOG00000023786) #24	Ppih (ENSRNOG00000008489) #25	AABR07073146.1 (ENSRNOG00000046174)	Ccdc30 (ENSRNOG00000008560) #26	Ppcs (ENSRNOG00000008572) #27	Zmynd12 (ENSRNOG00000022199) #28	ENSRNOG00000069006	Rimkla (ENSRNOG00000008625) #29	Foxj3 (ENSRNOG00000061851) #31	Rps27a-ps1 (ENSRNOG00000034246)	Guca2a (ENSRNOG00000008849) #32	Guca2b (ENSRNOG00000008979) #33	Hivep3 (ENSRNOG00000009341) #34	Edn2 (ENSRNOG00000009390) #36