Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000006224	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00700000105447	ENSGT00390000007816 #26	ENSGT00390000000654	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00970000194001	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36
Glires	ANCESTRAL SPECIES		ENSGT00390000006224	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00700000105447	ENSGT00390000007816 #26	ENSGT00390000000654	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00970000194001	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36
Rodentia	ANCESTRAL SPECIES		ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00700000105447	ENSGT00390000007816 #26	ENSGT00390000000654	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00970000194001	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36
Rodentia_B	ANCESTRAL SPECIES		ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00700000105447	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT01100000264574 #34	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00700000105447	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT01100000264574 #34	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37
Muroidea	ANCESTRAL SPECIES	3	ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00700000105447	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT01100000264574 #34	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721.db.a ##25	ENSGT00700000105447	ENSGT00940000154721.db.b #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37
Cricetidae	ANCESTRAL SPECIES	2	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b.a #14	ENSGT01090000260044.A.a.b.a.b.b ##14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721.eb ##25	ENSGT00940000167024	ENSGT00940000154721.db.b #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b.a #14	ENSGT01090000260044.A.a.b.a.b.b ##14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721.db.b #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999	ENSGT00410000025651.B
Northern American deer mouse	MODERN SPECIES	11	ENSPEMG00000026809 #7	ENSPEMG00000024455 #8	ENSPEMG00000028049 #9	ENSPEMG00000028893 #10	ENSPEMG00000027546 #11	ENSPEMG00000030287 #12	ENSPEMG00000028436 #13	ENSPEMG00000029652 #14	Lao1 (ENSPEMG00000024040) #15	Slc2a1 (ENSPEMG00000023507) #16	Zfp691 (ENSPEMG00000009008) #17	Ermap (ENSPEMG00000009182) #18	Svbp (ENSPEMG00000031075) #19	Tmem269 (ENSPEMG00000006920) #20	AU022252 (ENSPEMG00000018660) #21	P3h1 (ENSPEMG00000001330) #22	Cldn19 (ENSPEMG00000025558) #23	Ybx1 (ENSPEMG00000002276) #24	Ppih (ENSPEMG00000011063) #25	Ccdc30 (ENSPEMG00000022709) #26	Ppcs (ENSPEMG00000024213) #27	Zmynd12 (ENSPEMG00000023152) #28	Rimkla (ENSPEMG00000023677) #29	Foxj3 (ENSPEMG00000024269) #30	Guca2a (ENSPEMG00000029117) #31	Guca2b (ENSPEMG00000018121) #32	ENSPEMG00000025907 #33	Gm55960 (ENSPEMG00000024634) #34	Hivep3 (ENSPEMG00000009270) #35	Edn2 (ENSPEMG00000023929) #36	Foxo6 (ENSPEMG00000026784) #37
Prairie vole	MODERN SPECIES	1	ENSMOCG00000010318	Cyp2j6 (ENSMOCG00000018597)	ENSMOCG00000005805	Or13p8 (ENSMOCG00000008289) ##14	ENSMOCG00000012714 #14	ENSMOCG00000022413 #14	ENSMOCG00000015307 ##14	Lao1 (ENSMOCG00000001605) #15	Slc2a1 (ENSMOCG00000021632) #16	Zfp691 (ENSMOCG00000009065) #17	Ermap (ENSMOCG00000020543) #18	ENSMOCG00000009079	ENSMOCG00000021602 #19	Tmem269 (ENSMOCG00000014096) #20	AU022252 (ENSMOCG00000018365) #21	P3h1 (ENSMOCG00000016299) #22	Cldn19 (ENSMOCG00000011268) #23	ENSMOCG00000021351 #24	ENSMOCG00000012270 ##25	Ccdc30 (ENSMOCG00000005423) #26	Ppcs (ENSMOCG00000009579) #27	Zmynd12 (ENSMOCG00000005965) #28	Rimkla (ENSMOCG00000020203) #29	Foxj3 (ENSMOCG00000021577) #30	Guca2a (ENSMOCG00000018839) #31	Guca2b (ENSMOCG00000011621) #32	Hivep3 (ENSMOCG00000012152) #35	Edn2 (ENSMOCG00000009940) #36	Foxo6 (ENSMOCG00000007735) #37	Scmh1 (ENSMOCG00000001256)	Slfnl1 (ENSMOCG00000019476)
Cricetinae	ANCESTRAL SPECIES	5	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b.a.a.b #14	ENSGT01090000260044.A.a.b.a.b.a.a.a.b #14	ENSGT01090000260044.A.a.b.a.b.a.a.a.a.b #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000165203	ENSGT00940000153341.b.p.a.b.b.b ##24	ENSGT00940000154721.eb ##25	ENSGT00940000167024	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00900000143347	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36
Chinese hamster chok1gshd	MODERN SPECIES	111	ENSCGRG00001001763 ##14	ENSCGRG00001012877 #14	ENSCGRG00001012611 #14	ENSCGRG00001018452 #14	ENSCGRG00001000900 #14	ENSCGRG00001012702 #14	ENSCGRG00001012569 ##14	ENSCGRG00001001790 #14	Lao1 (ENSCGRG00001001936) #15	Slc2a1 (ENSCGRG00001024604) #16	ENSCGRG00001006325 #17	Ermap (ENSCGRG00001021027) #18	Svbp (ENSCGRG00001019425) #19	Tmem269 (ENSCGRG00001023367) #20	AU022252 (ENSCGRG00001023179) #21	P3h1 (ENSCGRG00001014713) #22	Cldn19 (ENSCGRG00001003612) #23	ENSCGRG00001002534 ##24	ENSCGRG00001024101 ##25	ENSCGRG00001018996	Ccdc30 (ENSCGRG00001015266) #26	Ppcs (ENSCGRG00001013754) #27	Zmynd12 (ENSCGRG00001013189) #28	Rimkla (ENSCGRG00001011564) #29	ENSCGRG00001005285	Foxj3 (ENSCGRG00001024073) #30	Guca2a (ENSCGRG00001020375) #31	Guca2b (ENSCGRG00001019230) #32	ENSCGRG00001018314	Hivep3 (ENSCGRG00001024833) #35	Edn2 (ENSCGRG00001024277) #36
Golden Hamster	MODERN SPECIES	773	Tmem125 (ENSMAUG00000010670)	Cfap57 (ENSMAUG00000015337)	Ebna1bp2 (ENSMAUG00000011372)	Or13p10 (ENSMAUG00000004422) ##14	ENSMAUG00000003674 ##14	Or13p3 (ENSMAUG00000003996) ##14	ENSMAUG00000014177 #14	ENSMAUG00000022148 #14	Lao1 (ENSMAUG00000011260) #15	Slc2a1 (ENSMAUG00000017803) #16	Zfp691 (ENSMAUG00000010681) #17	Ermap (ENSMAUG00000021042) #18	Svbp (ENSMAUG00000007778) #19	Tmem269 (ENSMAUG00000018901) #20	AU022252 (ENSMAUG00000006595) #21	P3h1 (ENSMAUG00000021789) #22	Cldn19 (ENSMAUG00000014943) #23	ENSMAUG00000016728	ENSMAUG00000016280 ##25	ENSMAUG00000012532	ENSMAUG00000009054	Ccdc30 (ENSMAUG00000018957) #26	Zmynd12 (ENSMAUG00000005478) #28	Rimkla (ENSMAUG00000012694) #29	ENSMAUG00000009384 #30	Guca2a (ENSMAUG00000013195) #31	Guca2b (ENSMAUG00000010390) #32	ENSMAUG00000020202	Hivep3 (ENSMAUG00000021204) #35	Edn2 (ENSMAUG00000004856) #36	Foxo6 (ENSMAUG00000020845) #37
Murinae	ANCESTRAL SPECIES	2	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b.d #14	ENSGT01090000260044.A.a.b.a.b.c.b #14	ENSGT01090000260044.A.a.b.a.b.c.a #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721.db.a ##25	ENSGT00700000105447	ENSGT00940000154721.db.b #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37
Mus	ANCESTRAL SPECIES	3	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b.d #14	ENSGT01090000260044.A.a.b.a.b.c.b #14	ENSGT01090000260044.A.a.b.a.b.c.a.a.a #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721.db.b #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00530000064266	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999
Mus_A	ANCESTRAL SPECIES	3	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b.d #14	ENSGT01090000260044.A.a.b.a.b.c.b #14	ENSGT01090000260044.A.a.b.a.b.c.a.a.a #14	ENSGT01090000260044.A.a.b.a.b.c.a.a.b.b.a.b #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721.db.b #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00530000064266	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b.c.a.a.b.b.a.a #14	ENSGT01090000260044.A.a.b.a.b.c.a.a.b.b.a.b #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721.db.b #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00530000064266	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999
Mouse	MODERN SPECIES	13	Or10ak14 (ENSMUSG00000095218) #14	Or10ak13 (ENSMUSG00000111159) #14	Or10ak12 (ENSMUSG00000066061) #14	Or10ak11 (ENSMUSG00000110947) #14	Or10ak9 (ENSMUSG00000073769) #14	Or10ak16 (ENSMUSG00000073768) #14	Or10ak8 (ENSMUSG00000096705) #14	Or10ak7 (ENSMUSG00000111259) #14	Lao1 (ENSMUSG00000024903) #15	Slc2a1 (ENSMUSG00000028645) #16	Zfp691 (ENSMUSG00000045268) #17	Ermap (ENSMUSG00000028644) #18	Svbp (ENSMUSG00000028643) #19	AU022252 (ENSMUSG00000078584) #21	Tmem269 (ENSMUSG00000028642) #20	P3h1 (ENSMUSG00000028641) #22	Cldn19 (ENSMUSG00000066058) #23	Ybx1 (ENSMUSG00000028639) #24	Ppih (ENSMUSG00000060288) #25	Ccdc30 (ENSMUSG00000028637) #26	Ppcs (ENSMUSG00000028636) #27	Zmynd12 (ENSMUSG00000070806) #28	Rimkla (ENSMUSG00000048899) #29	Frg2f1 (ENSMUSG00000087385)	Foxj3 (ENSMUSG00000032998) #30	Guca2a (ENSMUSG00000023247) #31	Guca2b (ENSMUSG00000032978) #32	Hivep3 (ENSMUSG00000028634) #35	Gm55960 (ENSMUSG00000115115) #34	Edn2 (ENSMUSG00000028635) #36	Foxo6 (ENSMUSG00000052135) #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b.c.a.a.b.b.a.a #14	ENSGT01090000260044.A.a.b.a.b.c.a.a.b.b.a.b #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721.db.b #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00530000064266	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999
spretus	MODERN SPECIES	13	Or13p3 (MGP_SPRETEiJ_G0027356) ##14	Or13p8 (MGP_SPRETEiJ_G0027357) ##14	Or13p5 (MGP_SPRETEiJ_G0027358) ##14	MGP_SPRETEiJ_G0027359 #14	MGP_SPRETEiJ_G0027360 #14	MGP_SPRETEiJ_G0027361 #14	MGP_SPRETEiJ_G0027363 #14	MGP_SPRETEiJ_G0027362 #14	Lao1 (MGP_SPRETEiJ_G0027364) #15	Slc2a1 (MGP_SPRETEiJ_G0027365) #16	Zfp691 (MGP_SPRETEiJ_G0027366) #17	Ermap (MGP_SPRETEiJ_G0027367) #18	Svbp (MGP_SPRETEiJ_G0027368) #19	AU022252 (MGP_SPRETEiJ_G0027369) #21	Tmem269 (MGP_SPRETEiJ_G0027370) #20	P3h1 (MGP_SPRETEiJ_G0027371) #22	Cldn19 (MGP_SPRETEiJ_G0027372) #23	Ybx1 (MGP_SPRETEiJ_G0027373) #24	Ppih (MGP_SPRETEiJ_G0027374) #25	MGP_SPRETEiJ_G0027375 #26	Ppcs (MGP_SPRETEiJ_G0027376) #27	Zmynd12 (MGP_SPRETEiJ_G0027377) #28	Rimkla (MGP_SPRETEiJ_G0027378) #29	Frg2f1 (MGP_SPRETEiJ_G0027379)	Foxj3 (MGP_SPRETEiJ_G0027380) #30	Guca2a (MGP_SPRETEiJ_G0027381) #31	Guca2b (MGP_SPRETEiJ_G0027382) #32	Hivep3 (MGP_SPRETEiJ_G0027383) #35	Edn2 (MGP_SPRETEiJ_G0027384) #36	Foxo6 (MGP_SPRETEiJ_G0027385) #37	Scmh1 (MGP_SPRETEiJ_G0027386)
Steppe mouse	MODERN SPECIES	3192							ENSMSIG00000011281 #14	Or10ak7 (ENSMSIG00000011277) #14	Lao1 (ENSMSIG00000011267) #15	Slc2a1 (ENSMSIG00000011247) #16	Zfp691 (ENSMSIG00000011235) #17	Ermap (ENSMSIG00000011202) #18	Svbp (ENSMSIG00000011169) #19	Tmem269 (ENSMSIG00000011160) #20	AU022252 (ENSMSIG00000011139) #21	ENSMSIG00000011133 #22	Cldn19 (ENSMSIG00000011084) #23	Ybx1 (ENSMSIG00000011043) #24	ENSMSIG00000011024	Ppih (ENSMSIG00000010898) #25	ENSMSIG00000010856	Ccdc30 (ENSMSIG00000010771) #26	Ppcs (ENSMSIG00000010759) #27	Zmynd12 (ENSMSIG00000010735) #28	Rimkla (ENSMSIG00000010726) #29	ENSMSIG00000010718	Frg2f1 (ENSMSIG00000010706)	ENSMSIG00000010690	Foxj3 (ENSMSIG00000010593) #30	ENSMSIG00000010554 #31	Guca2b (ENSMSIG00000010523) #32
Ryukyu mouse	MODERN SPECIES	13	Tmem125 (MGP_CAROLIEiJ_G0026379)	Cfap57 (MGP_CAROLIEiJ_G0026380)	Ebna1bp2 (MGP_CAROLIEiJ_G0026381)	MGP_CAROLIEiJ_G0026382 ##14	MGP_CAROLIEiJ_G0026383 #14	MGP_CAROLIEiJ_G0026384 #14	MGP_CAROLIEiJ_G0026385 #14	MGP_CAROLIEiJ_G0026386 #14	Lao1 (MGP_CAROLIEiJ_G0026387) #15	Slc2a1 (MGP_CAROLIEiJ_G0026388) #16	Zfp691 (MGP_CAROLIEiJ_G0026389) #17	Ermap (MGP_CAROLIEiJ_G0026390) #18	Svbp (MGP_CAROLIEiJ_G0026391) #19	AU022252 (MGP_CAROLIEiJ_G0026392) #21	Tmem269 (MGP_CAROLIEiJ_G0026393) #20	P3h1 (MGP_CAROLIEiJ_G0026394) #22	Cldn19 (MGP_CAROLIEiJ_G0026395) #23	Ybx1 (MGP_CAROLIEiJ_G0026396) #24	Ppih (MGP_CAROLIEiJ_G0026397) #25	MGP_CAROLIEiJ_G0026398 #26	Ppcs (MGP_CAROLIEiJ_G0026399) #27	Zmynd12 (MGP_CAROLIEiJ_G0026400) #28	Rimkla (MGP_CAROLIEiJ_G0026401) #29	Frg2f1 (MGP_CAROLIEiJ_G0026402)	Foxj3 (MGP_CAROLIEiJ_G0026403) #30	Guca2a (MGP_CAROLIEiJ_G0026404) #31	Guca2b (MGP_CAROLIEiJ_G0026405) #32	Hivep3 (MGP_CAROLIEiJ_G0026406) #35	Edn2 (MGP_CAROLIEiJ_G0026407) #36	Foxo6 (MGP_CAROLIEiJ_G0026408) #37	Scmh1 (MGP_CAROLIEiJ_G0026409)
Shrew mouse	MODERN SPECIES	19	Tie1 (MGP_PahariEiJ_G0028708)	2610528J11Rik (MGP_PahariEiJ_G0028709)	Tmem125 (MGP_PahariEiJ_G0028710)	Cfap57 (MGP_PahariEiJ_G0028711)	Ebna1bp2 (MGP_PahariEiJ_G0028712)	MGP_PahariEiJ_G0028713 #14	MGP_PahariEiJ_G0028714 ##14	MGP_PahariEiJ_G0028715 #14	Lao1 (MGP_PahariEiJ_G0028716) #15	Slc2a1 (MGP_PahariEiJ_G0028717) #16	Zfp691 (MGP_PahariEiJ_G0028718) #17	Ermap (MGP_PahariEiJ_G0028719) #18	Svbp (MGP_PahariEiJ_G0028720) #19	Tmem269 (MGP_PahariEiJ_G0028721) #20	MGP_PahariEiJ_G0028722 #21	P3h1 (MGP_PahariEiJ_G0028723) #22	Cldn19 (MGP_PahariEiJ_G0028724) #23	Ybx1 (MGP_PahariEiJ_G0028725) #24	MGP_PahariEiJ_G0028726 ##25	MGP_PahariEiJ_G0028727 #26	Ppcs (MGP_PahariEiJ_G0028728) #27	Zmynd12 (MGP_PahariEiJ_G0028729) #28	Rimkla (MGP_PahariEiJ_G0028730) #29	MGP_PahariEiJ_G0028731	Foxj3 (MGP_PahariEiJ_G0028732) #30	Guca2a (MGP_PahariEiJ_G0028733) #31	MGP_PahariEiJ_G0028734 #32	Hivep3 (MGP_PahariEiJ_G0028735) #35	Edn2 (MGP_PahariEiJ_G0028736) #36	Foxo6 (MGP_PahariEiJ_G0028737) #37	Scmh1 (MGP_PahariEiJ_G0028738)
Rat	MODERN SPECIES	15	Olfr1330-ps1 (ENSRNOG00000068591) #14	Or10ak11 (ENSRNOG00000063479) #14	Or10ak7b (ENSRNOG00000067801) #14	Or10ak7f (ENSRNOG00000063242) #14	Or10ak13 (ENSRNOG00000066045) #14	ENSRNOG00000063399 #14	Or10ak7 (ENSRNOG00000067935) #14	Lao1 (ENSRNOG00000007232) #15	Ubb-ps1 (ENSRNOG00000069384)	Slc2a1 (ENSRNOG00000007284) #16	Zfp691 (ENSRNOG00000007398) #17	Ermap (ENSRNOG00000000335) #18	Svbp (ENSRNOG00000007404) #19	Tmem269 (ENSRNOG00000006658) #20	RGD1564804 (ENSRNOG00000027455) #21	P3h1 (ENSRNOG00000053991) #22	Cldn19 (ENSRNOG00000007922) #23	Ybx1 (ENSRNOG00000023786) #24	Ppih (ENSRNOG00000008489) #25	AABR07073146.1 (ENSRNOG00000046174)	Ccdc30 (ENSRNOG00000008560) #26	Ppcs (ENSRNOG00000008572) #27	Zmynd12 (ENSRNOG00000022199) #28	ENSRNOG00000069006	Rimkla (ENSRNOG00000008625) #29	Foxj3 (ENSRNOG00000061851) #30	Rps27a-ps1 (ENSRNOG00000034246)	Guca2a (ENSRNOG00000008849) #31	Guca2b (ENSRNOG00000008979) #32	Hivep3 (ENSRNOG00000009341) #35	Edn2 (ENSRNOG00000009390) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1213										Slc2a1 (ENSNGAG00000012002) #16	Zfp691 (ENSNGAG00000010599) #17	ENSNGAG00000010442 #18	Svbp (ENSNGAG00000010080) #19	Tmem269 (ENSNGAG00000000755) #20	AU022252 (ENSNGAG00000018582) #21	P3h1 (ENSNGAG00000011079) #22	Cldn19 (ENSNGAG00000017810) #23	Ybx1 (ENSNGAG00000015432) #24	ENSNGAG00000013511 #25	ENSNGAG00000012254	Ccdc30 (ENSNGAG00000013205) #26	Ppcs (ENSNGAG00000011477) #27
Lesser Egyptian jerboa	MODERN SPECIES	188													ENSJJAG00000024006	Tmem269 (ENSJJAG00000009589) #20	AU022252 (ENSJJAG00000010568) #21	P3h1 (ENSJJAG00000011354) #22	Cldn19 (ENSJJAG00000014962) #23	ENSJJAG00000016017 #24	ENSJJAG00000006568 #25	Ccdc30 (ENSJJAG00000023941) #26	ENSJJAG00000004047	Ppcs (ENSJJAG00000009656) #27	Zmynd12 (ENSJJAG00000010097) #28	Rimkla (ENSJJAG00000011118) #29	Foxj3 (ENSJJAG00000018049) #30	Guca2a (ENSJJAG00000009524) #31	ENSJJAG00000009743 #32	Hivep3 (ENSJJAG00000011284) #35	Edn2 (ENSJJAG00000016538) #36	Foxo6 (ENSJJAG00000016967) #37	Scmh1 (ENSJJAG00000019805)
Kangaroo rat	MODERN SPECIES	352	Cdc20 (ENSDORG00000014768)	Mpl (ENSDORG00000014766)	Tie1 (ENSDORG00000024284)	ENSDORG00000007010	2610528J11Rik (ENSDORG00000007013)	Tmem125 (ENSDORG00000023586)	Cfap57 (ENSDORG00000007799)	Ebna1bp2 (ENSDORG00000007797)	Lao1 (ENSDORG00000028962) #15	Slc2a1 (ENSDORG00000011923) #16	Zfp691 (ENSDORG00000027786) #17	Ermap (ENSDORG00000011268) #18	Svbp (ENSDORG00000029314) #19	Tmem269 (ENSDORG00000023354) #20	AU022252 (ENSDORG00000011265) #21	P3h1 (ENSDORG00000011264) #22	Cldn19 (ENSDORG00000011262) #23	Ybx1 (ENSDORG00000016627) #24	ENSDORG00000016152 #25	ENSDORG00000008148 #26	Ppcs (ENSDORG00000015843) #27	Zmynd12 (ENSDORG00000015840) #28	Rimkla (ENSDORG00000015839) #29	Foxj3 (ENSDORG00000015838) #30	Guca2a (ENSDORG00000015837) #31	ENSDORG00000015916 #32	Hivep3 (ENSDORG00000006074) #35	Edn2 (ENSDORG00000006073) #36	Foxo6 (ENSDORG00000024053) #37	Scmh1 (ENSDORG00000004955)	Slfnl1 (ENSDORG00000004953)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00390000007816 #26	ENSGT00390000000654	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00970000194001	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00970000194001	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999
Marmotini	ANCESTRAL SPECIES		ENSGT00620000088018.h	ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT01100000264574 #34	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999
Alpin marmot	MODERN SPECIES	15	CFAP57 (ENSMMMG00000001332)	EBNA1BP2 (ENSMMMG00000001428)	ENSMMMG00000001451 ##14	ENSMMMG00000001460 ##14	ENSMMMG00000001478 ##14	ENSMMMG00000001489 ##14	ENSMMMG00000001503 #15	ENSMMMG00000001535	SLC2A1 (ENSMMMG00000001574) #16	ENSMMMG00000001610 #17	ERMAP (ENSMMMG00000001617) #18	ENSMMMG00000001632 #19	ENSMMMG00000001646 #20	C1orf50 (ENSMMMG00000001676) #21	ENSMMMG00000001687	P3H1 (ENSMMMG00000001705) #22	CLDN19 (ENSMMMG00000001817) #23	ENSMMMG00000001834 #24	PPIH (ENSMMMG00000001881) #25	ENSMMMG00000001948 #26	PPCS (ENSMMMG00000001992) #27	ZMYND12 (ENSMMMG00000002011) #28	RIMKLA (ENSMMMG00000002028) #29	FOXJ3 (ENSMMMG00000002048) #30	GUCA2A (ENSMMMG00000002105) #31	GUCA2B (ENSMMMG00000002123) #32	ENSMMMG00000002145	ENSMMMG00000002219 #34	HIVEP3 (ENSMMMG00000002224) #35	ENSMMMG00000002239	ENSMMMG00000002251
Marmotini_b	ANCESTRAL SPECIES		ENSGT00620000088018.h	ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT01100000264574 #34	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999
Squirrel	MODERN SPECIES	74	CFAP57 (ENSSTOG00000022840)	EBNA1BP2 (ENSSTOG00000004747)	ENSSTOG00000024292 ##14	ENSSTOG00000027047 ##14	ENSSTOG00000022697 ##14	ENSSTOG00000009038 ##14	ENSSTOG00000027942 ##14	ENSSTOG00000020420 #14	ENSSTOG00000021901 #15	SLC2A1 (ENSSTOG00000021861) #16	ZNF691 (ENSSTOG00000000130) #17	ERMAP (ENSSTOG00000000123) #18	SVBP (ENSSTOG00000024761) #19	ENSSTOG00000000122 #20	C1orf50 (ENSSTOG00000000121) #21	P3H1 (ENSSTOG00000000119) #22	CLDN19 (ENSSTOG00000000117) #23	ENSSTOG00000000116 #24	PPIH (ENSSTOG00000000115) #25	ENSSTOG00000000114 #26	PPCS (ENSSTOG00000000111) #27	ZMYND12 (ENSSTOG00000000110) #28	RIMKLA (ENSSTOG00000000109) #29	FOXJ3 (ENSSTOG00000007775) #30	GUCA2A (ENSSTOG00000001891) #31	GUCA2B (ENSSTOG00000027358) #32	HIVEP3 (ENSSTOG00000014879) #35	EDN2 (ENSSTOG00000014874) #36	FOXO6 (ENSSTOG00000026753) #37	SCMH1 (ENSSTOG00000013099)	SLFNL1 (ENSSTOG00000027731)
Arctic ground squirrel	MODERN SPECIES	454									SLC2A1 (ENSUPAG00010009500) #16	ZNF691 (ENSUPAG00010009497) #17	ERMAP (ENSUPAG00010009463) #18	ENSUPAG00010009461 #19	ENSUPAG00010009441 #20	ENSUPAG00010009432	C1orf50 (ENSUPAG00010009420) #21	P3H1 (ENSUPAG00010009375) #22	CLDN19 (ENSUPAG00010009369) #23	ENSUPAG00010009343	PPIH (ENSUPAG00010009190) #25	ENSUPAG00010009148 #26	PPCS (ENSUPAG00010009138) #27	ZMYND12 (ENSUPAG00010009127) #28	RIMKLA (ENSUPAG00010009102) #29	FOXJ3 (ENSUPAG00010009073) #30	GUCA2A (ENSUPAG00010009059) #31	GUCA2B (ENSUPAG00010009046) #32	ENSUPAG00010009015	ENSUPAG00010009010 #34	HIVEP3 (ENSUPAG00010008983) #35	EDN2 (ENSUPAG00010008968) #36	FOXO6 (ENSUPAG00010008964) #37
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005012413 ##14	ENSSVLG00005012394 ##14	ENSSVLG00005012342	ENSSVLG00005012283 ##14	ENSSVLG00005012249 ##14	ENSSVLG00005012157 ##14	ENSSVLG00005012137 #14	ENSSVLG00005012113	ENSSVLG00005011876 #15	SLC2A1 (ENSSVLG00005011775) #16	ZNF691 (ENSSVLG00005011749) #17	ERMAP (ENSSVLG00005011679) #18	SVBP (ENSSVLG00005011644) #19	ENSSVLG00005011496 #20	C1orf50 (ENSSVLG00005011424) #21	P3H1 (ENSSVLG00005011353) #22	CLDN19 (ENSSVLG00005011316) #23	ENSSVLG00005011204 #24	PPIH (ENSSVLG00005011156) #25	CCDC30 (ENSSVLG00005010582) #26	PPCS (ENSSVLG00005010465) #27	ZMYND12 (ENSSVLG00005010434) #28	RIMKLA (ENSSVLG00005010382) #29	FOXJ3 (ENSSVLG00005010205) #30	GUCA2A (ENSSVLG00005010160) #31	GUCA2B (ENSSVLG00005010132) #32	ENSSVLG00005010108	HIVEP3 (ENSSVLG00005010057) #35	EDN2 (ENSSVLG00005010001) #36	FOXO6 (ENSSVLG00005009973) #37	ENSSVLG00005009957
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00950000183104.A.a.a	ENSGT00940000161225	ENSGT00940000157693	ENSGT00510000048988	ENSGT00390000003015	ENSGT00620000088018.h	ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00390000007816 #26	ENSGT00390000000654	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT01100000264574 #34	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT01050000244838.H.d	ENSGT00950000183104.A.a.a	ENSGT00940000161225	ENSGT00940000157693	ENSGT00510000048988	ENSGT00390000003015	ENSGT00620000088018.h	ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999	ENSGT00410000025651.B
Hystricomorpha_b	ANCESTRAL SPECIES	90	ENSGT01050000244838.H.d	ENSGT00950000183104.A.a.a	ENSGT00940000161225	ENSGT00940000157693	ENSGT00510000048988	ENSGT00390000003015	ENSGT00620000088018.h	ENSGT00390000014984	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00390000006113 #19	ENSGT00940000154169.B #20	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00390000007816 #26	ENSGT00950000182834.C #27	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999	ENSGT00410000025651.B
Long-tailed chinchilla	MODERN SPECIES	244	ELOVL1 (ENSCLAG00000005835)	CDC20 (ENSCLAG00000005417)	MPL (ENSCLAG00000005179)	TIE1 (ENSCLAG00000004371)	C1orf210 (ENSCLAG00000003472)	TMEM125 (ENSCLAG00000003252)	CFAP57 (ENSCLAG00000002618)	EBNA1BP2 (ENSCLAG00000002547)	ENSCLAG00000017559 ##14	ENSCLAG00000002144 #15	SLC2A1 (ENSCLAG00000002106) #16	ZNF691 (ENSCLAG00000002021) #17	SVBP (ENSCLAG00000003001) #19	ENSCLAG00000002885 #20	C1orf50 (ENSCLAG00000002818) #21	P3H1 (ENSCLAG00000002493) #22	CLDN19 (ENSCLAG00000002321) #23	ENSCLAG00000002253 #24	PPIH (ENSCLAG00000002063) #25	CCDC30 (ENSCLAG00000004571) #26	ENSCLAG00000004515	PPCS (ENSCLAG00000004488) #27	ZMYND12 (ENSCLAG00000004415) #28	RIMKLA (ENSCLAG00000004183) #29	FOXJ3 (ENSCLAG00000004107) #30	GUCA2A (ENSCLAG00000003499) #31	GUCA2B (ENSCLAG00000003462) #32	HIVEP3 (ENSCLAG00000003048) #35	EDN2 (ENSCLAG00000002304) #36	FOXO6 (ENSCLAG00000002214) #37	ENSCLAG00000002113
Degu	MODERN SPECIES	286								ENSODEG00000003794 #15	SLC2A1 (ENSODEG00000003831) #16	ENSODEG00000003864	ENSODEG00000019202 #17	SVBP (ENSODEG00000003888) #19	ENSODEG00000001409 #20	C1orf50 (ENSODEG00000001430) #21	ENSODEG00000018684	P3H1 (ENSODEG00000001470) #22	CLDN19 (ENSODEG00000001571) #23	ENSODEG00000001592 ##24	ENSODEG00000001627 #25	ENSODEG00000001693 #26	PPCS (ENSODEG00000001735) #27	ZMYND12 (ENSODEG00000001753) #28	RIMKLA (ENSODEG00000001770) #29	ENSODEG00000001782	FOXJ3 (ENSODEG00000001809) #30	GUCA2A (ENSODEG00000001820) #31	GUCA2B (ENSODEG00000001838) #32	ENSODEG00000018717	HIVEP3 (ENSODEG00000001881) #35	EDN2 (ENSODEG00000001944) #36	FOXO6 (ENSODEG00000001967) #37
Guinea pig	MODERN SPECIES	133	MPL (ENSCPOG00000006086)	TIE1 (ENSCPOG00000006080)	C1orf210 (ENSCPOG00000034493)	TMEM125 (ENSCPOG00000039580)	CFAP57 (ENSCPOG00000007489)	EBNA1BP2 (ENSCPOG00000005187)	ENSCPOG00000033534 ##14	ENSCPOG00000026850 ##14	ENSCPOG00000008911 ##14	ENSCPOG00000035738 ##14	SLC2A1 (ENSCPOG00000000635) #16	ZNF691 (ENSCPOG00000010765) #17	SVBP (ENSCPOG00000033208) #19	ENSCPOG00000027098 #20	C1orf50 (ENSCPOG00000039943) #21	P3H1 (ENSCPOG00000021271) #22	CLDN19 (ENSCPOG00000039124) #23	ENSCPOG00000010888 #24	PPIH (ENSCPOG00000008214) #25	ENSCPOG00000001391 #26	PPCS (ENSCPOG00000003240) #27	ZMYND12 (ENSCPOG00000012992) #28	RIMKLA (ENSCPOG00000005184) #29	HPDL (ENSCPOG00000019649)	MUTYH (ENSCPOG00000012452)	TOE1 (ENSCPOG00000036595)	ENSCPOG00000033680	TESK2 (ENSCPOG00000012459)	MMACHC (ENSCPOG00000014136)	PRDX1 (ENSCPOG00000014137)	AKR1A1 (ENSCPOG00000012718)
Naked mole-rat female	MODERN SPECIES	26	TMEM125 (ENSHGLG00000003453)	CFAP57 (ENSHGLG00000002959)	EBNA1BP2 (ENSHGLG00000002849)	ENSHGLG00000042997	ENSHGLG00000050288 ##14	ENSHGLG00000035461 ##14	ENSHGLG00000003737	ENSHGLG00000019963 ##14	ENSHGLG00000048449 ##14	SLC2A1 (ENSHGLG00000002559) #16	ENSHGLG00000002421 #17	ERMAP (ENSHGLG00000041316) #18	CCDC23 (ENSHGLG00000039695) #19	ENSHGLG00000019496 #20	ENSHGLG00000019491 #21	P3H1 (ENSHGLG00000019499) #22	CLDN19 (ENSHGLG00000042448) #23	ENSHGLG00000019595 #24	PPIH (ENSHGLG00000002085) #25	CCDC30 (ENSHGLG00000001543) #26	ENSHGLG00000038638	ZMYND12 (ENSHGLG00000001119) #28	PPCS (ENSHGLG00000001315) #27	RIMKLA (ENSHGLG00000006347) #29	FOXJ3 (ENSHGLG00000003548) #30	ENSHGLG00000045938	GUCA2A (ENSHGLG00000038174) #31	GUCA2B (ENSHGLG00000005936) #32	ENSHGLG00000036409 #34	HIVEP3 (ENSHGLG00000004497) #35	EDN2 (ENSHGLG00000049667) #36
Lagomorpha	ANCESTRAL SPECIES	8	ENSGT00390000006224	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.b ##14	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##14	ENSGT01090000260044.A.a.b.a.b #14	ENSGT00940000160928 #15	ENSGT00940000156792 #16	ENSGT00940000161958 #17	ENSGT00940000160531 #18	ENSGT00390000006113 #19	ENSGT01050000245090	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a.a #24	ENSGT00940000154721 #25	ENSGT00390000007816 #26	ENSGT00390000004248 #28	ENSGT00390000014577.b #29	ENSGT00940000160362 #30	ENSGT00940000154436.a #31	ENSGT00940000154436.b #32	ENSGT00970000194001	ENSGT00940000157218.C #35	ENSGT00950000183053.A #36	ENSGT00940000161401 #37	ENSGT00940000157999	ENSGT00410000025651.B
Rabbit	MODERN SPECIES	4	CFAP144 (ENSOCUG00000017914)	ENSOCUG00000021639 ##14	ENSOCUG00000017916 ##14	ENSOCUG00000021538 ##14	ENSOCUG00000035400 ##14	ENSOCUG00000026265 ##14	ENSOCUG00000022397 ##14	ENSOCUG00000026602 #14	ENSOCUG00000001679 #15	SLC2A1 (ENSOCUG00000005924) #16	ZNF691 (ENSOCUG00000005611) #17	ERMAP (ENSOCUG00000024005) #18	ENSOCUG00000014170 #19	TMEM269 (ENSOCUG00000005607)	C1orf50 (ENSOCUG00000026605) #21	P3H1 (ENSOCUG00000005602) #22	CLDN19 (ENSOCUG00000026826) #23	ENSOCUG00000028047 #24	ENSOCUG00000011453 #25	CCDC30 (ENSOCUG00000011428) #26	ZMYND12 (ENSOCUG00000012139) #28	RIMKLA (ENSOCUG00000014732) #29	FOXJ3 (ENSOCUG00000011647) #30	GUCA2A (ENSOCUG00000011644) #31	ENSOCUG00000011637 #32	ENSOCUG00000034241	HIVEP3 (ENSOCUG00000001203) #35	ENSOCUG00000001201 #36	SCMH1 (ENSOCUG00000004703)	SLFNL1 (ENSOCUG00000004701)	CTPS1 (ENSOCUG00000016294)
Pika	MODERN SPECIES	4904													ENSOPRG00000008123	SVBP (ENSOPRG00000008110) #19	C1orf50 (ENSOPRG00000008102) #21	P3H1 (ENSOPRG00000008068) #22	CLDN19 (ENSOPRG00000008063) #23	ENSOPRG00000008050 #24
Tree shrew	MODERN SPECIES	5402										SLC2A1 (ENSTBEG00000016535) #16	ZNF691 (ENSTBEG00000016521) #17	ERMAP (ENSTBEG00000016400) #18	SVBP (ENSTBEG00000016338) #19	ENSTBEG00000016306 #20	C1orf50 (ENSTBEG00000016220) #21	P3H1 (ENSTBEG00000015860) #22	ENSTBEG00000015642 ##24	PPIH (ENSTBEG00000015485) #25	ENSTBEG00000015146 #26	PPCS (ENSTBEG00000015068) #27	ZMYND12 (ENSTBEG00000014693) #28	ENSTBEG00000014628 #29