Bovidae	ANCESTRAL SPECIES	1	ENSGT01090000260044.A.a.b.a.a.b ##9	ENSGT01090000260044.A.a.b.a.a.a.b #10	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #11	ENSGT01090000260044.A.a.b.a.a.a.a.b #12	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #13	ENSGT01090000260044.A.a.b.a.b.f.a #14	ENSGT01090000260044.A.a.b.a.b.e.b #15	ENSGT01090000260044.A.a.b.a.b.f.b ##9	ENSGT00940000160928 #16	ENSGT00940000156792 #17	ENSGT00940000161958 #18	ENSGT00940000160531	ENSGT00390000006113 #19	ENSGT00940000154169.B	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a ##24	ENSGT00940000153341.b.p.a.b.b #24	ENSGT00940000154721.xb.a #25	ENSGT00700000105447	ENSGT00940000154721.yb ##25	ENSGT00390000007816	ENSGT00950000182834.C #26	ENSGT00390000004248 #27	ENSGT00390000014577.b #28	ENSGT00940000160362 #29	ENSGT00940000154436.a #30	ENSGT00940000154436.b #31	ENSGT00970000194001	ENSGT00940000157218.C #32
Caprinae	ANCESTRAL SPECIES	2	ENSGT00390000006224 #8	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #9	ENSGT01090000260044.A.a.b.a.a.a.b #10	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #11	ENSGT01090000260044.A.a.b.a.a.a.a.b #12	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #13	ENSGT01090000260044.A.a.b.a.b.f.a #14	ENSGT01090000260044.A.a.b.a.b.e.b #15	ENSGT00940000160928 #16	ENSGT00940000156792 #17	ENSGT00940000161958 #18	ENSGT00940000160531	ENSGT00390000006113 #19	ENSGT00940000154169.B	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.b.b.f #24	ENSGT00940000154721.xb.a #25	ENSGT00390000007816	ENSGT00950000182834.C #26	ENSGT00390000004248 #27	ENSGT00390000014577.b #28	ENSGT00940000160362 #29	ENSGT00940000154436.a #30	ENSGT00940000154436.b #31	ENSGT00940000157218.C #32	ENSGT00950000183053.A #33	ENSGT00940000161401	ENSGT00940000157999.b #34	ENSGT00410000025651.B #35
Rambouillet Sheep	MODERN SPECIES		EBNA1BP2 (ENSOARG00020000671) #7	CFAP144 (ENSOARG00020000642) #8	ENSOARG00020000636 #9	ENSOARG00020000631 #10	ENSOARG00020000619 #11	ENSOARG00020000608 #12	ENSOARG00020000560 #13	ENSOARG00020000553 #14	ENSOARG00020000545 #15	ENSOARG00020000505 #16	SLC2A1 (ENSOARG00020000445) #17	ZNF691 (ENSOARG00020000426) #18	SVBP (ENSOARG00020000415) #19	TMEM269 (ENSOARG00020000403) #20	ENSOARG00020000393 #21	P3H1 (ENSOARG00020000368) #22	CLDN19 (ENSOARG00020000325) #23	ENSOARG00020000296 #24	PPIH (ENSOARG00020000274) #25	PPCS (ENSOARG00020000145) #26	ZMYND12 (ENSOARG00020000132) #27	RIMKLA (ENSOARG00020000124) #28	FOXJ3 (ENSOARG00020000103) #29	GUCA2A (ENSOARG00020000095) #30	GUCA2B (ENSOARG00020000089) #31	HIVEP3 (ENSOARG00020000082) #32	EDN2 (ENSOARG00020000081) #33	SCMH1 (ENSOARG00020000067) #34	SLFNL1 (ENSOARG00020000061) #35	CTPS1 (ENSOARG00020000058) #36	CITED4 (ENSOARG00020000054) #37
Goat	MODERN SPECIES	22	ENSCHIG00000018185 #11	ENSCHIG00000017587 #12	ENSCHIG00000023263 #13	ENSCHIG00000008088 #14	ENSCHIG00000012428 #15	ENSCHIG00000023252	ENSCHIG00000020869 #16	SLC2A1 (ENSCHIG00000015523) #17	ENSCHIG00000000575	ZNF691 (ENSCHIG00000012591) #18	ERMAP (ENSCHIG00000013586)	ENSCHIG00000013284	SVBP (ENSCHIG00000008164) #19	ENSCHIG00000017910	C1orf50 (ENSCHIG00000015103) #21	P3H1 (ENSCHIG00000008788) #22	CLDN19 (ENSCHIG00000017870) #23	ENSCHIG00000014169 #24	ENSCHIG00000007905 #25	CCDC30 (ENSCHIG00000018207)	PPCS (ENSCHIG00000022863) #26	ZMYND12 (ENSCHIG00000007728) #27	RIMKLA (ENSCHIG00000015404) #28	FOXJ3 (ENSCHIG00000021942) #29	GUCA2A (ENSCHIG00000005275) #30	GUCA2B (ENSCHIG00000019738) #31	ENSCHIG00000012856	HIVEP3 (ENSCHIG00000011517) #32	EDN2 (ENSCHIG00000024063) #33	FOXO6 (ENSCHIG00000018218)	SCMH1 (ENSCHIG00000024918) #34
Bovinae	ANCESTRAL SPECIES	1	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #9	ENSGT01090000260044.A.a.b.a.a.b ##9	ENSGT01090000260044.A.a.b.a.a.a.b #10	ENSGT01090000260044.A.a.b.a.b.f.a #14	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #11	ENSGT01090000260044.A.a.b.a.a.a.a.b #12	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #13	ENSGT01090000260044.A.a.b.a.b.f.b ##9	ENSGT00940000160928 #16	ENSGT00940000156792 #17	ENSGT00940000161958 #18	ENSGT00940000160531	ENSGT00390000006113 #19	ENSGT00940000154169.B	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a ##24	ENSGT00940000154721.xb.a #25	ENSGT00700000105447	ENSGT00940000154721.yb ##25	ENSGT00390000007816	ENSGT00940000153342.b.i.a.b	ENSGT00940000167024	ENSGT00390000000654	ENSGT00950000182834.C #26	ENSGT00390000004248 #27	ENSGT00390000014577.b #28	ENSGT00940000160362 #29	ENSGT00940000154436.a #30	ENSGT00940000154436.b #31
Bos	ANCESTRAL SPECIES		ENSGT01090000260044.A.a.b.a.a.a.b #10	ENSGT01090000260044.A.a.b.a.a.b.b ##9	ENSGT01090000260044.A.a.b.a.a.b.a ##9	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #11	ENSGT01090000260044.A.a.b.a.a.a.a.b #12	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #13	ENSGT01090000260044.A.a.b.a.b.f.a #14	ENSGT01090000260044.A.a.b.a.b.f.b ##9	ENSGT00940000160928 #16	ENSGT00940000156792 #17	ENSGT00940000161958 #18	ENSGT00940000160531.l	ENSGT00390000006113 #19	ENSGT00940000154169.B	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a ##24	ENSGT00940000154721.xb.a #25	ENSGT00700000105447	ENSGT00940000154721.yb ##25	ENSGT00390000007816	ENSGT00940000153342.b.i.a.b	ENSGT00940000167024	ENSGT00390000000654	ENSGT00950000182834.C #26	ENSGT00390000004248 #27	ENSGT00390000014577.b #28	ENSGT00940000160362 #29	ENSGT00940000154436.a #30	ENSGT00940000154436.b #31
Bos_a	ANCESTRAL SPECIES	1	ENSGT01090000260044.A.a.b.a.a.b.b ##9	ENSGT01090000260044.A.a.b.a.a.a.b #10	ENSGT01090000260044.A.a.b.a.a.b.a ##9	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #11	ENSGT01090000260044.A.a.b.a.a.a.a.b #12	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #13	ENSGT01090000260044.A.a.b.a.b.f.a #14	ENSGT01090000260044.A.a.b.a.b.f.b ##9	ENSGT00940000160928 #16	ENSGT00940000156792 #17	ENSGT00940000161958 #18	ENSGT00940000160531.l	ENSGT00390000006113 #19	ENSGT00940000154169.B	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.a ##24	ENSGT00940000154721.xb.a #25	ENSGT00390000007816	ENSGT00940000153342.b.i.a.b	ENSGT00940000167024	ENSGT00390000000654	ENSGT00950000182834.C #26	ENSGT00390000004248 #27	ENSGT00390000014577.b #28	ENSGT00940000160362 #29	ENSGT00940000154436.a #30	ENSGT00940000154436.b #31	ENSGT00970000194001	ENSGT00940000157218.C #32
Domestic yak	MODERN SPECIES	22	ENSBGRG00000011267 #9	ENSBGRG00000011307 ##9	ENSBGRG00000011337	ENSBGRG00000011360 #10	ENSBGRG00000011420 ##9	ENSBGRG00000011449 #11	ENSBGRG00000011456 #12	ENSBGRG00000011491 #13	ENSBGRG00000011573 #16	SLC2A1 (ENSBGRG00000011665) #17	ZNF691 (ENSBGRG00000011897) #18	ENSBGRG00000011933	SVBP (ENSBGRG00000011987) #19	ENSBGRG00000012038	C1orf50 (ENSBGRG00000012101) #21	P3H1 (ENSBGRG00000012203) #22	CLDN19 (ENSBGRG00000012480) #23	ENSBGRG00000012514	ENSBGRG00000012681 #25	ENSBGRG00000012821	ENSBGRG00000012949	ENSBGRG00000013002	PPCS (ENSBGRG00000013144) #26	ZMYND12 (ENSBGRG00000013236) #27	RIMKLA (ENSBGRG00000013342) #28	FOXJ3 (ENSBGRG00000013409) #29	GUCA2A (ENSBGRG00000013890) #30	ENSBGRG00000013948 #31	ENSBGRG00000014026	ENSBGRG00000014045	ENSBGRG00000014074
Wild yak	MODERN SPECIES	1280											SLC2A1 (ENSBMUG00000006972) #17	ZNF691 (ENSBMUG00000006983) #18	SVBP (ENSBMUG00000006993) #19	ENSBMUG00000007003	C1orf50 (ENSBMUG00000007012) #21	P3H1 (ENSBMUG00000007025) #22	CLDN19 (ENSBMUG00000007045) #23	ENSBMUG00000007078 ##24	ENSBMUG00000007203 #25
Bos_b	ANCESTRAL SPECIES	1	ENSGT01100000263497.E.b.f.b.a	ENSGT01090000260044.A.a.b.a.a.b.a ##9	ENSGT01090000260044.A.a.b.a.a.a.b #10	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #11	ENSGT01090000260044.A.a.b.a.a.a.a.b #12	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #13	ENSGT01090000260044.A.a.b.a.b.f.a #14	ENSGT01090000260044.A.a.b.a.b.f.b ##9	ENSGT00940000160928 #16	ENSGT00940000156792 #17	ENSGT00940000161958 #18	ENSGT00940000160531.l	ENSGT00390000006113 #19	ENSGT00940000154169.B	ENSGT00390000003084 #21	ENSGT00940000158725 #22	ENSGT00940000158624 #23	ENSGT00940000153341.b.p.a.b.b #24	ENSGT00940000154721.xb.a #25	ENSGT00700000105447	ENSGT00940000154721.yb ##25	ENSGT00390000007816	ENSGT00940000153342.b.i.a.b	ENSGT00940000167024	ENSGT00950000182834.C #26	ENSGT00390000004248 #27	ENSGT00390000014577.b #28	ENSGT00940000160362 #29	ENSGT00940000154436.a #30	ENSGT00940000154436.b #31	ENSGT00940000157218.C #32
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005008162 #11	ENSBIXG00005008149 #12	ENSBIXG00005008138 #13	ENSBIXG00005008124 #14	ENSBIXG00005008104 ##9	ENSBIXG00005008087 #16	ENSBIXG00005008067	ENSBIXG00005008058	ENSBIXG00005000102	SLC2A1 (ENSBIXG00005008046) #17	ZNF691 (ENSBIXG00005008018) #18	ENSBIXG00005008000	ENSBIXG00005000066	ENSBIXG00005000043	C1orf50 (ENSBIXG00005007953) #21	P3H1 (ENSBIXG00005007944) #22	CLDN19 (ENSBIXG00005007924) #23	YBX1 (ENSBIXG00005007911) #24	ENSBIXG00005007897 #25	ENSBIXG00005007879	ENSBIXG00005007865	ENSBIXG00005007856	ENSBIXG00005029286	PPCS (ENSBIXG00005029303) #26	ZMYND12 (ENSBIXG00005029316) #27	RIMKLA (ENSBIXG00005029322) #28	FOXJ3 (ENSBIXG00005029367) #29	ENSBIXG00005029424 #30	GUCA2B (ENSBIXG00005029429) #31	ENSBIXG00005029448	ENSBIXG00005029452
Cow	MODERN SPECIES	22	EBNA1BP2 (ENSBTAG00000021544) #7	FAM183A (ENSBTAG00000037555) #8	ENSBTAG00000051805 #9	OR13P2 (ENSBTAG00000048444) ##9	OR13P11 (ENSBTAG00000053196) ##9	OR13P4 (ENSBTAG00000001397) #10	OR10AK7 (ENSBTAG00000037810) #14	OR13P8 (ENSBTAG00000037770) #12	OR13P16B (ENSBTAG00000048721) #13	ENSBTAG00000012414 #16	SLC2A1 (ENSBTAG00000009617) #17	ZNF691 (ENSBTAG00000016028) #18	TMEM269 (ENSBTAG00000017387)	SVBP (ENSBTAG00000017388) #19	C3H1orf50 (ENSBTAG00000017386) #21	P3H1 (ENSBTAG00000017382) #22	CLDN19 (ENSBTAG00000017381) #23	YBX1 (ENSBTAG00000017368) #24	PPIH (ENSBTAG00000004590) ##25	ENSBTAG00000050906	CCDC30 (ENSBTAG00000004585)	ENSBTAG00000052771	PPCS (ENSBTAG00000012982) #26	ZMYND12 (ENSBTAG00000012979) #27	RIMKLA (ENSBTAG00000017502) #28	FOXJ3 (ENSBTAG00000015887) #29	GUCA2A (ENSBTAG00000007195) #30	GUCA2B (ENSBTAG00000007194) #31	HIVEP3 (ENSBTAG00000020745) #32	EDN2 (ENSBTAG00000021434) #33	FOXO6 (ENSBTAG00000024115)
American bison	MODERN SPECIES	3342	CFAP144 (ENSBBBG00000009608) #8	ENSBBBG00000009607 #9	ENSBBBG00000009604	ENSBBBG00000009601 #10	ENSBBBG00000009600 #14	ENSBBBG00000001552 #11	ENSBBBG00000009592 #12	ENSBBBG00000009590 #13	ENSBBBG00000009587 ##9	ENSBBBG00000009582 #16	SLC2A1 (ENSBBBG00000009579) #17	ZNF691 (ENSBBBG00000009575) #18	SVBP (ENSBBBG00000001549) #19	TMEM269 (ENSBBBG00000009568) #20	C1orf50 (ENSBBBG00000009566) #21	P3H1 (ENSBBBG00000009562) #22	CLDN19 (ENSBBBG00000009558) #23	ENSBBBG00000009552 ##24	ENSBBBG00000009548 #25	ENSBBBG00000009540	ENSBBBG00000001545	ENSBBBG00000007694	PPCS (ENSBBBG00000009532) #26	ZMYND12 (ENSBBBG00000009529) #27	RIMKLA (ENSBBBG00000001542) #28	FOXJ3 (ENSBBBG00000009523) #29	GUCA2A (ENSBBBG00000009517) #30	GUCA2B (ENSBBBG00000009516) #31	ENSBBBG00000009514	HIVEP3 (ENSBBBG00000001537) #32	EDN2 (ENSBBBG00000009510) #33