Neopterygii	ANCESTRAL SPECIES	40	ENSGT00510000046470.a.a.a	ENSGT00950000183021.a.a.b	ENSGT00940000159454	ENSGT01080000257410.B.a	ENSGT00940000157544	ENSGT00390000005870	ENSGT00940000155894	ENSGT00940000159307	ENSGT00940000157108	ENSGT00390000015084.d	ENSGT00550000074850	ENSGT00940000158260	ENSGT00940000162447	ENSGT01090000260080.b.b	ENSGT00940000153776.a.a	ENSGT00390000002854 #22	ENSGT00940000157709	ENSGT00390000003849	ENSGT00390000005213	ENSGT00940000154004.a	ENSGT00940000159294	ENSGT00940000154473.a	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100	ENSGT00940000153141.B.b	ENSGT00940000162962	ENSGT00940000158777	ENSGT00940000159203	ENSGT00490000043388.b.b	ENSGT00940000161484
Osteoglossocephalai	ANCESTRAL SPECIES	40	ENSGT00950000183021.a.a.a.a	ENSGT00900000143241	ENSGT00940000159454	ENSGT01080000257410.B.a	ENSGT00940000157544	ENSGT00390000005870	ENSGT00940000155894	ENSGT00940000159307	ENSGT00940000157108	ENSGT00390000015084.c.a	ENSGT00550000074850	ENSGT00940000158260	ENSGT00940000162447	ENSGT01090000260080.b.b	ENSGT00940000153776.a.a	ENSGT00390000002854 #22	ENSGT00940000157709	ENSGT00390000003849	ENSGT00940000159294	ENSGT00390000005213	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a	ENSGT00940000154004.a.e.a	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00390000014100.k.a	ENSGT00940000153141.B.b	ENSGT00940000162962	ENSGT00940000158777	ENSGT00960000189659
Clupeocephala	ANCESTRAL SPECIES	34	ENSGT00940000159454	ENSGT01080000257410.B.a.a.b	ENSGT00940000157544	ENSGT00390000005870	ENSGT00940000155894	ENSGT00940000159307	ENSGT00940000157108	ENSGT00390000015084.c.a	ENSGT00550000074850	ENSGT00940000158260	ENSGT00940000162447	ENSGT01090000260080.b.b	ENSGT00940000153776.a.a	ENSGT00390000015084.c.b	ENSGT00940000177201	ENSGT00390000002854 #22	ENSGT00940000157709.j	ENSGT00390000003849	ENSGT00940000154004.a.e.a	ENSGT00940000159294	ENSGT00940000157709.i	ENSGT00390000005213	ENSGT00940000154473.a	ENSGT00940000154004.a.e.b	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00390000014100.k.a	ENSGT00940000153141.B.b	ENSGT00940000162962	ENSGT01060000251044
Euteleosteomorpha	ANCESTRAL SPECIES	91	ENSGT00940000159454	ENSGT01080000257410.B.a.a.b	ENSGT00940000157544	ENSGT00390000005870	ENSGT00940000155894	ENSGT00940000159307	ENSGT00940000157108	ENSGT00390000015084.c.a	ENSGT00550000074850	ENSGT00940000158260	ENSGT00940000162447	ENSGT01090000260080.b.b	ENSGT00940000153776.a.a	ENSGT00390000015084.c.b	ENSGT00940000177201	ENSGT00390000002854 #22	ENSGT00940000157709.j	ENSGT00390000003849	ENSGT00940000154004.a.e.a	ENSGT00940000159294	ENSGT00940000157709.i	ENSGT00390000005213	ENSGT00940000154473.a	ENSGT00940000154004.a.e.b	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00940000162962	ENSGT01060000251044	ENSGT00940000158777	ENSGT00390000017765.b
Acanthomorphata	ANCESTRAL SPECIES	17	ENSGT00910000144592	ENSGT01030000234667.a.a.b.f	ENSGT00940000159820	ENSGT00940000157026	ENSGT00910000148338	ENSGT00940000155594.d	ENSGT00940000159566	ENSGT01030000234607.A.a.a.b	ENSGT00940000165754	ENSGT00940000158259.a	ENSGT00390000009194	ENSGT00390000014069.a	ENSGT00940000158547.d	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00390000002854 #22	ENSGT00940000157709.j	ENSGT00390000003849	ENSGT00940000154004.a.e.a	ENSGT00940000159294	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00940000162962	ENSGT00940000158777	ENSGT00390000017765.b	ENSGT00940000159385	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000154103.a	ENSGT00940000160085
Euacanthomorphacea	ANCESTRAL SPECIES	230														ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00390000002854 #22
Percomorphaceae	ANCESTRAL SPECIES	68												ENSGT00940000159409	ENSGT00950000183307	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT01010000222847	ENSGT01010000223507	ENSGT00940000154505.B #24	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00390000014380.h.b.b.i.a	ENSGT00500000044904.a.a.b #29	ENSGT00940000166734	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00940000177551	ENSGT00940000171785	ENSGT00940000158333 #13	ENSGT00950000183179.a #14	ENSGT00940000160470 #15	ENSGT00940000155924.b #16	ENSGT00940000166185 #17	ENSGT00940000157702 #18	ENSGT00940000164867.a #19	ENSGT00980000198724	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00940000168894	ENSGT00670000098480	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT01010000222847	ENSGT00940000154505.B #24	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00940000166734	ENSGT00500000044904.a.a.a #30	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT01030000234557.A.e.b.f #7	ENSGT01030000234824.C	ENSGT00940000171785	ENSGT00940000158333 #13	ENSGT00950000183179.a #14	ENSGT00940000160470 #15	ENSGT00940000155924.b #16	ENSGT00940000166185 #17	ENSGT00940000157702 #18	ENSGT00940000164867.a #19	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00940000168894	ENSGT00670000098480	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT01010000222847	ENSGT00940000154505.B #24	ENSGT01010000223507	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00940000159409	ENSGT00390000014380.h.b.b.i.a	ENSGT00940000166734	ENSGT00500000044904.a.a.a #30	ENSGT00940000156387 #33
Eupercaria	ANCESTRAL SPECIES	24												ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00670000098480	ENSGT00940000168894	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154505.B #24	ENSGT01010000223507	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00500000044904.a.a.b.b ##29	ENSGT00390000014380.h.b.b.i.a	ENSGT00940000166734	ENSGT00500000044904.a.a.a #30	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34
Eupecaria_A	ANCESTRAL SPECIES	8												ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00670000098480	ENSGT00940000168894	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154505.B #24	ENSGT01010000223507	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00500000044904.a.a.b.b ##29	ENSGT00390000014380.h.b.b.i.a	ENSGT00940000166734	ENSGT00500000044904.a.a.a #30	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34
Eupecaria_B	ANCESTRAL SPECIES	8														ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154505.B #24	ENSGT01010000223507	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00500000044904.a.a.b.b ##29	ENSGT00390000014380.h.b.b.i.a	ENSGT00940000166734	ENSGT00500000044904.a.a.a #30	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34
Perciformes	ANCESTRAL SPECIES	5	ENSGT00940000153141.B.b	ENSGT00390000014100.k.a	ENSGT01030000234891.f	ENSGT01030000234557.A.e.b.f.n.b #11	ENSGT00940000171785	ENSGT00940000158333 #13	ENSGT00950000183179.a #14	ENSGT00940000160470 #15	ENSGT00940000155924.b #16	ENSGT00940000166185 #17	ENSGT00940000157702 #18	ENSGT00940000164867.a #19	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00940000166734	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT01090000259997.a.d.b.a.b.a.b.a	ENSGT01090000260059.a.b.b.a.a.a.a.b.a.b.b.b	ENSGT00390000011144
Cottioidei	ANCESTRAL SPECIES	39	ENSGT00940000155931.b	ENSGT00390000013727.d.b	ENSGT00940000162100	ENSGT00940000153141.B.b	ENSGT00390000014100.k.a	ENSGT00940000158333 #13	ENSGT00950000183179.a #14	ENSGT00940000160470 #15	ENSGT00940000155924.b #16	ENSGT00940000166185 #17	ENSGT00940000157702 #18	ENSGT00940000164867.a #19	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT00940000168894	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00500000044904.a.a.a #30	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144	ENSGT01100000263491.a.b.a.a.b.b.a	ENSGT01060000249417
Lumpfish	MODERN SPECIES	8	ENSCLMG00005015418 #7	ENSCLMG00005015417 #8	ENSCLMG00005015416 #9	ENSCLMG00005015415 #10	ENSCLMG00005015414 #11	ENSCLMG00005015400 #12	smg7 (ENSCLMG00005012863) #13	nmnat2 (ENSCLMG00005012851) #14	LAMC2 (ENSCLMG00005012850) #15	dhx9 (ENSCLMG00005012844) #16	lamc1 (ENSCLMG00005012579) #17	RASAL2 (ENSCLMG00005010380) #18	ENSCLMG00005005899 #19	PHB2 (ENSCLMG00005004955) #20	fam49ba (ENSCLMG00005004926) #21	VCPIP1 (ENSCLMG00005004925) #22	DUSP28 (ENSCLMG00005004923) #23	proca (ENSCLMG00005004898) #24	ENSCLMG00005004890 #25	saga (ENSCLMG00005004889) #26	cldn15la (ENSCLMG00005004888) #27	ENSCLMG00005004886 #28	ENSCLMG00005004885 #29	ENSCLMG00005004884 #30	ENSCLMG00005004883 #31	ENSCLMG00005004882 #32	slc39a6 (ENSCLMG00005004806) #33	ENSCLMG00005004779 #34	cavin4a (ENSCLMG00005004770) #35	ift57 (ENSCLMG00005004501) #36	ENSCLMG00005004475 #37
Stickleback	MODERN SPECIES	121															ENSGACG00000015763	VCPIP1 (ENSGACG00000015765) #22	DUSP28 (ENSGACG00000015766) #23	ENSGACG00000015767	ENSGACG00000015768 #25	saga (ENSGACG00000015769) #26	cldn15la (ENSGACG00000015781) #27	ENSGACG00000015785	ENSGACG00000015787 #29	ENSGACG00000015788 #30	slc39a6 (ENSGACG00000015789) #33	ENSGACG00000015794 #34	cavin4a (ENSGACG00000015796) #35	ift57 (ENSGACG00000015797) #36	tmem71 (ENSGACG00000015805)	ENSGACG00000015807	ENSGACG00000015809
Perciformes_a	ANCESTRAL SPECIES	17													ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00940000166734	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT01090000259997.a.d.b.a.b.a.b.a	ENSGT01090000260059.a.b.b.a.a.a.a.b.a.b.b.b	ENSGT00390000011144
Channel bull blenny	MODERN SPECIES	99															ENSCGOG00000016297	VCPIP1 (ENSCGOG00000016311) #22
Pike perch	MODERN SPECIES	119																VCPIP1 (ENSSLUG00000019624) #22	DUSP28 (ENSSLUG00000019616) #23	ENSSLUG00000019610	ENSSLUG00000019606	ENSSLUG00000019597 #25	saga (ENSSLUG00000019581) #26	cldn15la (ENSSLUG00000019576) #27	ENSSLUG00000019538	ENSSLUG00000019531	ENSSLUG00000019528	ENSSLUG00000019526	ENSSLUG00000019523	ENSSLUG00000019521 #29	ENSSLUG00000019514 #33	ENSSLUG00000019519 #33	ENSSLUG00000019510 #34
Eupecaria_C	ANCESTRAL SPECIES	26																ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154505.B #24	ENSGT01010000223507	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00940000176074	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00940000164867.a #19	ENSGT00390000014380.h.b.b.i.a	ENSGT00940000166734	ENSGT00500000044904.a.a.a #30	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34
Gilthead seabream	MODERN SPECIES	13	ENSSAUG00010019027	ENSSAUG00010019026	ENSSAUG00010019024	ENSSAUG00010019021	ENSSAUG00010019019	rnf182 (ENSSAUG00010019017)	ranbp9 (ENSSAUG00010018844)	ENSSAUG00010018842	epdr1 (ENSSAUG00010018837)	stard3nl (ENSSAUG00010018832)	ENSSAUG00010018828	ENSSAUG00010018824	ENSSAUG00010018823	DUSP28 (ENSSAUG00010018821) #23	ENSSAUG00010018820	VCPIP1 (ENSSAUG00010018818) #22	DUSP28 (ENSSAUG00010018815) #23	proca (ENSSAUG00010018812) #24	ENSSAUG00010018809	ENSSAUG00010018806 #25	saga (ENSSAUG00010018448) #26	cldn15la (ENSSAUG00010018445) #27	ENSSAUG00010018443	ENSSAUG00010018442 #29	ENSSAUG00010018441	ENSSAUG00010018440 #29	ENSSAUG00010018439 #29	ENSSAUG00010018438	slc39a6 (ENSSAUG00010018437) #33	ENSSAUG00010018436 #34	cavin4a (ENSSAUG00010018434) #35
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	30																ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154505.B #24	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00940000159409	ENSGT00390000014380.h.b.b.i.a	ENSGT00940000166734	ENSGT00500000044904.a.a.a #30	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT01090000259997.a.d.b.a.b.a.b.a.c
Large yellow croaker	MODERN SPECIES	1															hnrnpc (ENSLCRG00005001948)	VCPIP1 (ENSLCRG00005001943) #22	ENSLCRG00005001938	proca (ENSLCRG00005001931) #24	ENSLCRG00005001912 #25	saga (ENSLCRG00005001762) #26	cldn15la (ENSLCRG00005001721) #27	ENSLCRG00005001707	ENSLCRG00005001694 #29	ENSLCRG00005001687	fam49ba (ENSLCRG00005001670) #21	PHB2 (ENSLCRG00005001585) #20	ENSLCRG00005001535	ENSLCRG00005001513	ENSLCRG00005001504	ENSLCRG00005001474	amotl2b (ENSLCRG00005001464)
European seabass	MODERN SPECIES	18	ENSDLAG00005028823	ENSDLAG00005021799	ENSDLAG00005029279	ENSDLAG00005027411	ENSDLAG00005016529	ENSDLAG00005028940	ENSDLAG00005028683	ENSDLAG00005004972 #21	ENSDLAG00005005078 #20	ENSDLAG00005031466	ENSDLAG00005032848	ENSDLAG00005009846	ENSDLAG00005031684	ENSDLAG00005034288	ENSDLAG00005030825	ENSDLAG00005019159 #22	ENSDLAG00005027609 #23	proca (ENSDLAG00005028067) #24	ENSDLAG00005019175 #25	saga (ENSDLAG00005019201) #26	ENSDLAG00005011325	cldn15la (ENSDLAG00005019586) #27	ENSDLAG00005019594	ENSDLAG00005030033	ENSDLAG00005030574	ENSDLAG00005004496	ENSDLAG00005019640	slc39a6 (ENSDLAG00005029027) #33	ENSDLAG00005028962 #34	cavin4a (ENSDLAG00005027577) #35	ift57 (ENSDLAG00005019658) #36
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	798															ENSLBEG00000028404	VCPIP1 (ENSLBEG00000028407) #22	DUSP28 (ENSLBEG00000028409) #23	proca (ENSLBEG00000028417) #24	ENSLBEG00000028419 #25	ENSLBEG00000028422	saga (ENSLBEG00000028424) #26	cldn15la (ENSLBEG00000028427) #27	ENSLBEG00000028429 #28	ENSLBEG00000028432 #29	ENSLBEG00000028433
Ballan wrasse	MODERN SPECIES	2332																VCPIP1 (ENSLBEG00000022994) #22
Tetraodontidae	ANCESTRAL SPECIES	13	ENSGT01100000263502.B.a.a.c	ENSGT00930000151022.b	ENSGT00940000155106	ENSGT00390000014167	ENSGT00940000157075	ENSGT00940000154634.c.lb.b	ENSGT00940000154634.d.b	ENSGT00530000064112.a	ENSGT00390000014722	ENSGT00940000156678	ENSGT00940000157031.l	ENSGT00730000113898	ENSGT00940000157116.e	ENSGT00950000182882.A.b.a	ENSGT00670000098480	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307.o #36	ENSGT00390000011144	ENSGT00940000158506	ENSGT00940000159760	ENSGT00940000159042	ENSGT00940000177987
Fugu	DUPLICATION
Fugu	MODERN SPECIES	14	ccr9a (ENSTRUG00000027740)	ENSTRUG00000032817	opn4.1 (ENSTRUG00000022276)	ENSTRUG00000004925	CDY1 (ENSTRUG00000004028)	rpp40 (ENSTRUG00000003755)	riok1 (ENSTRUG00000002854)	IMPA1 (ENSTRUG00000032086)	impa1 (ENSTRUG00000004529)	ENSTRUG00000028422	zgc:55781 (ENSTRUG00000030163)	dnajc1 (ENSTRUG00000029659)	ENSTRUG00000001931	ENSTRUG00000031820	inhbab (ENSTRUG00000029110)	VCPIP1 (ENSTRUG00000027707) #22	DUSP28 (ENSTRUG00000023600) #23	proc (ENSTRUG00000030654)	ENSTRUG00000003874 #25	saga (ENSTRUG00000003400) #26	cldn15la (ENSTRUG00000003031) #27	ENSTRUG00000026538	ENSTRUG00000002830 #33	ENSTRUG00000028541 #34	cavin4a (ENSTRUG00000029042) #35	dnaaf11 (ENSTRUG00000033252)	ENSTRUG00000027209 #34	cavin4a (ENSTRUG00000026048) #35	ift57 (ENSTRUG00000031642) #36	ENSTRUG00000031903	ENSTRUG00000027163
Fugu	MODERN SPECIES	81			impa1 (ENSTRUG00000027767)	ENSTRUG00000004478	zgc:55781 (ENSTRUG00000028425)	dnajc1 (ENSTRUG00000004038)	ENSTRUG00000033167	ENSTRUG00000022181	inhbab (ENSTRUG00000030215)	amph (ENSTRUG00000032200)	ENSTRUG00000029651	ENSTRUG00000032123	ENSTRUG00000028590	ENSTRUG00000031547	ENSTRUG00000029508	VCPIP1 (ENSTRUG00000004472) #22	ENSTRUG00000027876	ENSTRUG00000026969
Tetraodon	MODERN SPECIES	6														ENSTNIG00000000351	amph (ENSTNIG00000002801)	VCPIP1 (ENSTNIG00000002800) #22	DUSP28 (ENSTNIG00000002799) #23	ENSTNIG00000002798	ENSTNIG00000002797 #26	cldn15la (ENSTNIG00000002796) #27	ENSTNIG00000002795	slc39a6 (ENSTNIG00000002794) #33	ENSTNIG00000019773 #34	cavin4a (ENSTNIG00000000801) #35	ift57 (ENSTNIG00000006522) #36	ENSTNIG00000000277	dnaaf11 (ENSTNIG00000005936)	KCNQ3 (ENSTNIG00000005986)	ENSTNIG00000005987	efr3a (ENSTNIG00000005988)	adcy8 (ENSTNIG00000008003)
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00940000171785	ENSGT00940000158333 #13	ENSGT00950000183179.a #14	ENSGT00940000160470 #15	ENSGT00940000155924.b #16	ENSGT00940000166185 #17	ENSGT00940000157702 #18	ENSGT00940000164867.a #19	ENSGT00500000044904.a.a.b.b ##29	ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00940000168894	ENSGT00670000098480	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT01010000222847	ENSGT00940000154505.B #24	ENSGT01010000223507	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00940000166734	ENSGT00390000014380.h.b.b.i.a	ENSGT00940000159409	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35
Anabantaria	ANCESTRAL SPECIES	33	ENSGT00940000158333 #13	ENSGT00950000183179.a #14	ENSGT00940000160470 #15	ENSGT00940000155924.b #16	ENSGT00940000166185 #17	ENSGT00940000157702 #18	ENSGT00940000159409	ENSGT00390000014380.h.b.b.i.a	ENSGT00940000166734	ENSGT00510000048354	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00940000168894	ENSGT00670000098480	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT01010000222847	ENSGT00940000154505.B #24	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00940000165457.a.b #28
Zig-zag eel	MODERN SPECIES	8	ENSMAMG00000018401 #21	ENSMAMG00000018387	ENSMAMG00000024645	ENSMAMG00000018368	ENSMAMG00000024530	ENSMAMG00000018284	ENSMAMG00000018360	ENSMAMG00000024826	ENSMAMG00000027971	ENSMAMG00000018241	ENSMAMG00000024495	ENSMAMG00000018260	ENSMAMG00000018297	ENSMAMG00000026898	ENSMAMG00000018215	ENSMAMG00000018200 #22	ENSMAMG00000024636	ENSMAMG00000016119	ENSMAMG00000016065	ENSMAMG00000016057	ENSMAMG00000015996	ENSMAMG00000015936	ENSMAMG00000015864	ENSMAMG00000015790	ENSMAMG00000015773	adcy8 (ENSMAMG00000015730)	efr3a (ENSMAMG00000015656)	ENSMAMG00000026532	ENSMAMG00000015583	ENSMAMG00000024858	ENSMAMG00000027459
Anabantoidei	ANCESTRAL SPECIES	27	ENSGT00940000158333 #13	ENSGT00950000183179.a #14	ENSGT00970000193381.a.a.a.a.a.b.b.c.b	ENSGT00940000160470 #15	ENSGT00940000155924.b #16	ENSGT00940000166185 #17	ENSGT00940000157702 #18	ENSGT00940000164867.a #19	ENSGT00500000044904.a.a.b.b ##29	ENSGT00390000014380.h.b.b.i.a	ENSGT00940000166734	ENSGT00510000048354	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT01010000222847	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00940000165457.a.b #28	ENSGT00950000182860.a.a.b.a.a	ENSGT00940000160228.i.b.h	ENSGT00730000114275	ENSGT00940000166125	ENSGT00940000155003.e.b	ENSGT01090000259987.a.b.d.b.a	ENSGT00940000157169.d	ENSGT00950000183214.a.a.a.a
Siamese fighting fish	MODERN SPECIES	8	RASAL2 (ENSBSLG00000017913) #18	ranbp9 (ENSBSLG00000016460)	ENSBSLG00000016431	epdr1 (ENSBSLG00000016429)	ENSBSLG00000016426	ENSBSLG00000014797	zmynd11 (ENSBSLG00000014254)	LARP4B (ENSBSLG00000014087)	gtpbp4 (ENSBSLG00000013696)	wdr37 (ENSBSLG00000013402)	ENSBSLG00000013346	ENSBSLG00000013279	ENSBSLG00000013257	SLCO5A1 (ENSBSLG00000013205)	stard3nl (ENSBSLG00000013123)	VCPIP1 (ENSBSLG00000012423) #22	ENSBSLG00000012419	ENSBSLG00000012219	ENSBSLG00000012176	ENSBSLG00000012162	ENSBSLG00000012141	ENSBSLG00000012135	DUSP28 (ENSBSLG00000012128) #23	ENSBSLG00000012112	ENSBSLG00000012099	ENSBSLG00000012074 #25	saga (ENSBSLG00000012022) #26	cldn15la (ENSBSLG00000012014) #27	ENSBSLG00000025862 #28	ENSBSLG00000025861	ENSBSLG00000025859
Climbing perch	MODERN SPECIES	8	ENSATEG00000029836	ENSATEG00000007683 #20	ENSATEG00000007730 #21	ENSATEG00000007778	ENSATEG00000007819	ENSATEG00000007885	ENSATEG00000008037	ENSATEG00000028279	ENSATEG00000026369	ENSATEG00000028790	ENSATEG00000008357	ENSATEG00000008081	ENSATEG00000008113	ENSATEG00000008615	ENSATEG00000029352	ENSATEG00000008633 #22	ENSATEG00000008674	ENSATEG00000008649	ENSATEG00000028124	ENSATEG00000027044	ENSATEG00000008771	ENSATEG00000008777 #23	ENSATEG00000008792	ENSATEG00000008893 #25	ENSATEG00000009013	ENSATEG00000009024 #26	ENSATEG00000009058	cldn15la (ENSATEG00000009071) #27	ENSATEG00000009090	ENSATEG00000009097	ENSATEG00000009114
Carangaria	ANCESTRAL SPECIES	5	ENSGT00390000014100.k.a	ENSGT00940000171785	ENSGT00940000158333 #13	ENSGT00950000183179.a #14	ENSGT00940000160470 #15	ENSGT00940000155924.b #16	ENSGT00940000166185 #17	ENSGT00940000157702 #18	ENSGT00940000159409	ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00670000098480	ENSGT00940000168894	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154505.B #24	ENSGT01010000223507	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00940000166734	ENSGT00390000014380.h.b.b.i.a	ENSGT00940000164867.a #19	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00940000155931.b	ENSGT00940000153141.B.b	ENSGT00390000014100.k.a	ENSGT00940000175566	ENSGT01030000234557.A.e.b.f #7	ENSGT00940000158333 #13	ENSGT00950000183179.a #14	ENSGT00940000160470 #15	ENSGT00940000155924.b #16	ENSGT00940000166185 #17	ENSGT00940000157702 #18	ENSGT00940000159409	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00940000166734	ENSGT00390000014380.h.b.b.i.a	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144	ENSGT01100000263533.b.b.a.a.a.a.a.b	ENSGT00940000158506
Tongue sole	MODERN SPECIES	12	ENSCSEG00000021689	ZEB1 (ENSCSEG00000021695)	ENSCSEG00000021700	pold3 (ENSCSEG00000021727)	ENSCSEG00000006366	ENSCSEG00000006380	ENSCSEG00000006418	KIF5B (ENSCSEG00000006440)	ENSCSEG00000006456	arhgap12a (ENSCSEG00000006471)	ENSCSEG00000006584	KCNJ10 (ENSCSEG00000006610)	ENSCSEG00000006670	ptmab (ENSCSEG00000006674)	fam49ba (ENSCSEG00000006682) #21	VCPIP1 (ENSCSEG00000006691) #22	ENSCSEG00000006696	DUSP28 (ENSCSEG00000006706) #23	ENSCSEG00000006713	ENSCSEG00000006725 #25	ENSCSEG00000006730	saga (ENSCSEG00000006746) #26	cldn15la (ENSCSEG00000006915) #27	ENSCSEG00000006955 #36	ENSCSEG00000006969 #35	KCNQ3 (ENSCSEG00000006974)	dnaaf11 (ENSCSEG00000007000)	ENSCSEG00000007055	ENSCSEG00000007083	slc39a6 (ENSCSEG00000007099) #33	ENSCSEG00000007133
Turbot	MODERN SPECIES	19	ENSSMAG00000024186 ##7	ENSSMAG00000024031	SMG7 (ENSSMAG00000006067) #13	nmnat2 (ENSSMAG00000032779) #14	LAMC2 (ENSSMAG00000031240) #15	dhx9 (ENSSMAG00000037435) #16	lamc1 (ENSSMAG00000022929) #17	ENSSMAG00000022591	ENSSMAG00000031677 #18	ENSSMAG00000023268	ENSSMAG00000024538	ENSSMAG00000006671 ##29	ENSSMAG00000006717 #20	ENSSMAG00000006755 #21	ENSSMAG00000006767	ENSSMAG00000028387 #22	ENSSMAG00000026034	ENSSMAG00000030609	ENSSMAG00000032936 #23	ENSSMAG00000027991	ENSSMAG00000022169 #26	cldn15la (ENSSMAG00000030377) #27	ENSSMAG00000030740	ENSSMAG00000022213	ENSSMAG00000029657	ENSSMAG00000004616 #33	ENSSMAG00000035033 #33	ENSSMAG00000019861	ENSSMAG00000033946 #34	cavin4a (ENSSMAG00000034898) #35	ift57 (ENSSMAG00000017043) #36
Carangaria_A	ANCESTRAL SPECIES	2										ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00670000098480	ENSGT00940000168894	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154505.B #24	ENSGT01010000223507	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144	ENSGT01100000263491.a.b.a.a.b.b.a	ENSGT01100000263491.b	ENSGT01100000263533.b.b.a.a.a.a.a.b
Barramundi perch	MODERN SPECIES	61	glra1 (ENSLCAG00010006550)	g3bp1 (ENSLCAG00010006527)	sparc (ENSLCAG00010006486)	atox1 (ENSLCAG00010006472)	SLC36A1 (ENSLCAG00010006468)	mtnr1al (ENSLCAG00010006464)	ENSLCAG00010006461	PHB2 (ENSLCAG00010006417) #20	fam49ba (ENSLCAG00010006387) #21	ENSLCAG00010006377	ENSLCAG00010006358	ENSLCAG00010006311	ENSLCAG00010006302	ENSLCAG00010006287	ENSLCAG00010006273	VCPIP1 (ENSLCAG00010006269) #22	ENSLCAG00010006267	ENSLCAG00010006259	ENSLCAG00010006251	DUSP28 (ENSLCAG00010006246) #23	proca (ENSLCAG00010006241) #24	ENSLCAG00010006240 #25	ENSLCAG00010006237	saga (ENSLCAG00010006228) #26	cldn15la (ENSLCAG00010006222) #27	ENSLCAG00010006213	slc39a6 (ENSLCAG00010006206) #33	ENSLCAG00010006203 #34	cavin4a (ENSLCAG00010006201) #35	ift57 (ENSLCAG00010006184) #36	tmem71 (ENSLCAG00010006175)
Seriola	ANCESTRAL SPECIES	275															ENSGT00940000168894	ENSGT00390000002854 #22
Greater amberjack	MODERN SPECIES	123														ENSSDUG00000009732	ENSSDUG00000009719	VCPIP1 (ENSSDUG00000009700) #22	ENSSDUG00000009601	ENSSDUG00000009577	ENSSDUG00000009563	ENSSDUG00000009553	ENSSDUG00000009534	ENSSDUG00000009439	ENSSDUG00000009425	ENSSDUG00000009421	ENSSDUG00000008943	ENSSDUG00000008682	ENSSDUG00000007336	ENSSDUG00000006426	ENSSDUG00000005401	ENSSDUG00000005323	ENSSDUG00000004867
Yellowtail amberjack	MODERN SPECIES	2162																VCPIP1 (ENSSLDG00000018179) #22
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00940000158333 #13	ENSGT00950000183179.a #14	ENSGT00940000160470 #15	ENSGT00940000155924.b #16	ENSGT00940000158069	ENSGT00940000166185 #17	ENSGT00940000157702 #18	ENSGT00940000159409	ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT01100000263507.E.a.b.a.a.b.b	ENSGT00940000155285.b.i	ENSGT00940000168894	ENSGT00670000098480	ENSGT00390000002854 #22	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.a	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.b.a.b	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT01010000222847	ENSGT00940000154505.B #24	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00500000044904.a.a.b.a.a ##29	ENSGT00390000014380.h.b.b.i.a	ENSGT00940000166734	ENSGT00500000044904.a.a.a #30
Ovalentaria_B	ANCESTRAL SPECIES	35	ENSGT00940000160470 #15	ENSGT00940000155924.b #16	ENSGT00940000158069	ENSGT00940000166185 #17	ENSGT00940000157702 #18	ENSGT00940000159409	ENSGT01100000263507.E.a.b.a.b.a	ENSGT00940000164867.a #19	ENSGT00390000014380.h.b.b.i.a	ENSGT00500000044904.a.a.b.a.a ##29	ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT01100000263507.E.a.b.a.a.b.b	ENSGT00940000155285.b.i	ENSGT00390000002854 #22	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.a	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.b.a.b	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT01010000222847	ENSGT01010000223507	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00940000166734	ENSGT00500000044904.a.a.a #30	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34
Pomacentridae	ANCESTRAL SPECIES	122												ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT01010000223507	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00940000176074	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144	ENSGT01100000263491.a.b.a.a.b.b.a
Pomacentridae_A	ANCESTRAL SPECIES	124												ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b.a #25	ENSGT01010000223507	ENSGT00940000155435.B.b.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00940000176074	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144	ENSGT01100000263491.a.b.a.a.b.b.a	ENSGT00940000160025
Amphiprion	ANCESTRAL SPECIES	152												ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT00940000155285.b.i	ENSGT00390000002854 #22	ENSGT01030000234576.D.a.b.a.a.a.a.a.b.f	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b.a #25	ENSGT01010000223507	ENSGT00940000155435.B.b.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00940000176074	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144	ENSGT01100000263491.a.b.a.a.b.b.a
Orange clownfish	MODERN SPECIES	1	ENSAPEG00000006650	nmnat2 (ENSAPEG00000006544) #14	ENSAPEG00000006471 #15	ENSAPEG00000006443	dhx9 (ENSAPEG00000006339) #16	lamc1 (ENSAPEG00000006224) #17	RASAL2 (ENSAPEG00000006151) #18	ENSAPEG00000006120	dlg1b (ENSAPEG00000005923)	ENSAPEG00000005793	ENSAPEG00000005769	ptmab (ENSAPEG00000005747)	PHB2 (ENSAPEG00000005712) #20	fam49ba (ENSAPEG00000005679) #21	ENSAPEG00000005657	VCPIP1 (ENSAPEG00000005642) #22	ENSAPEG00000005592	ENSAPEG00000005578	ENSAPEG00000005566	ENSAPEG00000005462	ENSAPEG00000005378	ENSAPEG00000004486	ENSAPEG00000004256	ENSAPEG00000004189	DUSP28 (ENSAPEG00000004168) #23	ENSAPEG00000004162	ENSAPEG00000004134 #25	ENSAPEG00000004119	ENSAPEG00000004099 #25	saga (ENSAPEG00000004037) #26	ENSAPEG00000004023
Clown anemonefish	MODERN SPECIES	860													PHB2 (ENSAOCG00000022789) #20	fam49ba (ENSAOCG00000022768) #21	ENSAOCG00000022734	VCPIP1 (ENSAOCG00000022721) #22	ENSAOCG00000022675	ENSAOCG00000022402	ENSAOCG00000022375	DUSP28 (ENSAOCG00000022298) #23	ENSAOCG00000022287	ENSAOCG00000022279 #25	ENSAOCG00000022260 #25	ENSAOCG00000022241	saga (ENSAOCG00000022223) #26
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	3245																VCPIP1 (ENSAPOG00000023150) #22	ENSAPOG00000023168
Spiny chromis	MODERN SPECIES	3543																VCPIP1 (ENSAPOG00000007605) #22
Bicolor damselfish	MODERN SPECIES	1306																VCPIP1 (ENSSPAG00000022030) #22	ENSSPAG00000022041	ENSSPAG00000022104	ENSSPAG00000000064	ENSSPAG00000000384	ENSSPAG00000001478	ENSSPAG00000001572	ENSSPAG00000001851	ENSSPAG00000002174	ENSSPAG00000002850	DUSP28 (ENSSPAG00000002861) #23	ENSSPAG00000002877	ENSSPAG00000002907	ENSSPAG00000002916	saga (ENSSPAG00000002962) #26	cldn15la (ENSSPAG00000003249) #27
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00940000160470 #15	ENSGT00940000155924.b #16	ENSGT00940000158069	ENSGT00940000166185 #17	ENSGT01100000263533.b.b.b.a.a.a.a.c.b	ENSGT00940000157702 #18	ENSGT00950000183052.b.c.b.b.b.a.b.a	ENSGT00940000164867.a #19	ENSGT00390000014380.h.b.b.i.a	ENSGT00500000044904.a.a.b.a.a.a ##29	ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT01100000263507.E.a.b.a.a.b.b	ENSGT00940000155285.b.i	ENSGT00390000002854 #22	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.a	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.a ##25	ENSGT01010000222847	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00940000165457.a.b #28	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00940000166734	ENSGT00500000044904.a.a.a #30	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00940000155924.b #16	ENSGT00940000158069	ENSGT00940000166185 #17	ENSGT01100000263533.b.b.b.a.a.a.a.c.b	ENSGT00940000157702 #18	ENSGT00950000183052.b.c.b.b.b.a.b.a	ENSGT00940000164867.a #19	ENSGT00390000014380.h.b.b.i.a.f.b	ENSGT00500000044904.a.a.b.a.a.a.b ##29	ENSGT00390000014380.h.b.b.i.a.g	ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT01100000263507.E.a.b.a.a.b.b	ENSGT00940000155285.b.i	ENSGT00390000002854 #22	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.a	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.a ##25	ENSGT01010000222847	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00940000165457.a.b #28	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00940000166734.`b.b	ENSGT00500000044904.a.a.a #30	ENSGT00940000166734.`b.a	ENSGT00940000156387 #33
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00940000158069	ENSGT00940000166185 #17	ENSGT01100000263533.b.b.b.a.a.a.a.c.b	ENSGT00940000157702 #18	ENSGT00950000183052.b.c.b.b.b.a.b.a	ENSGT00940000164867.a #19	ENSGT00390000014380.h.b.b.i.a.f.b	ENSGT00500000044904.a.a.b.a.a.a.b ##29	ENSGT00390000014380.h.b.b.i.a.g	ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT01100000263507.E.a.b.a.a.b.b	ENSGT00940000155285.b.i	ENSGT00940000155060.C.b.kb.e	ENSGT00390000002854 #22	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.a	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT01010000222847.a	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00940000165457.a.b #28	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00940000166734.`b.a.c.b	ENSGT00500000044904.a.a.a #30	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00990000204560.f
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00940000158069	ENSGT00940000166185 #17	ENSGT01100000263533.b.b.b.a.a.a.a.c.b	ENSGT00940000157702 #18	ENSGT00950000183052.b.c.b.b.b.a.b.a	ENSGT00940000164867.a #19	ENSGT00390000014380.h.b.b.i.a.f.b	ENSGT00500000044904.a.a.b.a.a.a.b ##29	ENSGT00390000014380.h.b.b.i.a.g	ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT01100000263507.E.a.b.a.a.b.b	ENSGT00940000155285.b.i	ENSGT00940000155060.C.b.kb.e	ENSGT00390000002854 #22	ENSGT01100000263507.E.a.a.a.b.a.b	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00940000165457.a.b #28	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00940000166734.`b.a.c.b.a	ENSGT00500000044904.a.a.a #30	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00990000204560.f	ENSGT00390000006307 #36
Burton s mouthbrooder	MODERN SPECIES	1100																VCPIP1 (ENSHBUG00000013216) #22	ENSHBUG00000013194	ENSHBUG00000013174	DUSP28 (ENSHBUG00000013166) #23	ENSHBUG00000013161	ENSHBUG00000013147 #25	saga (ENSHBUG00000013124) #26	cldn15la (ENSHBUG00000013024) #27	ENSHBUG00000000377 #28	ENSHBUG00000012995
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT00940000166185 #17	ENSGT01100000263533.b.b.b.a.a.a.a.c.b	ENSGT00940000157702 #18	ENSGT00950000183052.b.c.b.b.b.a.b.a	ENSGT00940000164867.a #19	ENSGT00940000159409	ENSGT00390000014380.h.b.b.i.a.f.b	ENSGT00500000044904.a.a.b.a.a.a.b ##29	ENSGT00390000014380.h.b.b.i.a.g	ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT01100000263507.E.a.b.a.a.b.b	ENSGT00940000155285.b.i	ENSGT00940000155060.C.b.kb.e	ENSGT00390000002854 #22	ENSGT00940000153582.a.m.a.b.f.a.b.a.a	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00940000176074	ENSGT00940000165457.a.b #28	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00940000166734.`b.a.c.b.a	ENSGT00500000044904.a.a.a #30	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00990000204560.f
P. nyererei	MODERN SPECIES	472																VCPIP1 (ENSPNYG00000017219) #22	ENSPNYG00000017141	DUSP28 (ENSPNYG00000017116) #23	ENSPNYG00000017097	ENSPNYG00000017078 #25	saga (ENSPNYG00000017036) #26	cldn15la (ENSPNYG00000017014) #27	ENSPNYG00000016986	ENSPNYG00000016704	ENSPNYG00000016575 #29	slc39a6 (ENSPNYG00000016529) #33	ENSPNYG00000016504 #34	cavin4a (ENSPNYG00000016495) #35	ift57 (ENSPNYG00000016464) #36	tmem71 (ENSPNYG00000016416)	ENSPNYG00000016409
Haplochromini_B	ANCESTRAL SPECIES	54	ENSGT00390000014380.h.b.b.i.a.f.a.b	ENSGT00500000044904.a.a.b.a.a.b ##29	ENSGT00390000014380.h.b.b.i.a.f.a.a.b	ENSGT00500000044904.a.a.b.a.a.a.a.a ##29	ENSGT00390000014380.h.b.b.i.a.f.a.a.a	ENSGT00500000044904.a.a.b.a.a.a.a.b ##29	ENSGT00500000044904.a.a.b.a.a.a.b ##29	ENSGT00390000014380.h.b.b.i.a.g	ENSGT00950000183307	ENSGT01070000254364	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT01100000263507.E.a.b.a.a.b.b	ENSGT00940000155285.b.i	ENSGT00940000155060.C.b.kb.e	ENSGT00390000002854 #22	ENSGT00940000153582.a.m.a.b.f.a.b.a.a	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00940000165457.a.b #28	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00940000166734.`b.a.c.b.a	ENSGT00500000044904.a.a.a.c #30	ENSGT00940000166734.`b.a.c.b.b	ENSGT00940000166734.`b.a.d	ENSGT00500000044904.a.a.a.d #30	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34
Zebra mbuna	MODERN SPECIES	1100	CDYL (ENSMZEG00005019469)	rpp40 (ENSMZEG00005019475)	riok1 (ENSMZEG00005019482)	amph (ENSMZEG00005019507)	ENSMZEG00005019668	inhbab (ENSMZEG00005019672)	ENSMZEG00005019675	ENSMZEG00005019692	dnajc1 (ENSMZEG00005019846)	zgc:55781 (ENSMZEG00005019850)	ENSMZEG00005019851	impa1 (ENSMZEG00005019864)	IMPA1 (ENSMZEG00005019878)	ENSMZEG00005019885	pcdh18a (ENSMZEG00005019896)	VCPIP1 (ENSMZEG00005019904) #22	ENSMZEG00005019918	DUSP28 (ENSMZEG00005020238) #23	ENSMZEG00005020242	ENSMZEG00005020244 #25	saga (ENSMZEG00005020254) #26	cldn15la (ENSMZEG00005020261) #27	ENSMZEG00005020266	ENSMZEG00005020272 #29	ENSMZEG00005020274	ENSMZEG00005020277 #30	ENSMZEG00005020281	ENSMZEG00005020282 #30	slc39a6 (ENSMZEG00005020284) #33	ENSMZEG00005020300 #34	cavin4a (ENSMZEG00005020303) #35
Eastern happy	MODERN SPECIES	9	ENSACLG00000022932	ENSACLG00000022989 ##29	ENSACLG00000023018	ENSACLG00000023033 ##29	ENSACLG00000023052	ENSACLG00000023126 ##29	ENSACLG00000023138	ptmab (ENSACLG00000023150)	ENSACLG00000023169	PHB2 (ENSACLG00000023179) #20	fam49ba (ENSACLG00000023192) #21	ENSACLG00000023210	ENSACLG00000023215	ENSACLG00000023260	ENSACLG00000023284	VCPIP1 (ENSACLG00000023296) #22	ENSACLG00000023305	ENSACLG00000023326	DUSP28 (ENSACLG00000023316) #23	ENSACLG00000023329	ENSACLG00000023343 #25	saga (ENSACLG00000023356) #26	cldn15la (ENSACLG00000023440) #27	ENSACLG00000023445 #28	ENSACLG00000023468 #29	ENSACLG00000023474	ENSACLG00000023475 #30	ENSACLG00000023481	ENSACLG00000023483 #30	slc39a6 (ENSACLG00000023489) #33	ENSACLG00000023536 #34
Lyretail cichlid	MODERN SPECIES	417																VCPIP1 (ENSNBRG00000016942) #22	ENSNBRG00000016933	DUSP28 (ENSNBRG00000016924) #23	ENSNBRG00000016911	ENSNBRG00000016896	ENSNBRG00000016878 #25	saga (ENSNBRG00000016857) #26	cldn15la (ENSNBRG00000016831) #27	ENSNBRG00000016809	ENSNBRG00000016799	ENSNBRG00000016776 #30	ENSNBRG00000016760	ENSNBRG00000016746 #33	ENSNBRG00000016734	ENSNBRG00000016711 #34	ENSNBRG00000016704 #35
Nile tilapia	MODERN SPECIES	9	nmnat2 (ENSONIG00000000283) #14	ENSONIG00000000277 #15	dhx9 (ENSONIG00000000293) #16	lamc1 (ENSONIG00000000305) #17	ENSONIG00000040035	RASAL2 (ENSONIG00000000310) #18	ENSONIG00000031255	ENSONIG00000000315 #19	ENSONIG00000033583	ENSONIG00000041915	ENSONIG00000030214	ENSONIG00000012334	ENSONIG00000041514	ENSONIG00000009170	ENSONIG00000034530	VCPIP1 (ENSONIG00000012335) #22	ENSONIG00000039622	DUSP28 (ENSONIG00000040098) #23	ENSONIG00000012339	ENSONIG00000042330 #25	saga (ENSONIG00000012353) #26	cldn15la (ENSONIG00000012361) #27	ENSONIG00000012362	ENSONIG00000021041 #29	ENSONIG00000033238	ENSONIG00000028071 #30	ENSONIG00000028389	ENSONIG00000038880	ENSONIG00000038168 #30	slc39a6 (ENSONIG00000012364) #33	ENSONIG00000012365 #34
Midas cichlid	MODERN SPECIES	1288																VCPIP1 (ENSACIG00000004728) #22	ENSACIG00000004745	ENSACIG00000004829	ENSACIG00000004894 #25	saga (ENSACIG00000005030) #26	ENSACIG00000005061 #27
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00910000148338	ENSGT00940000155594.d	ENSGT00940000159566	ENSGT01030000234607.A.a.a.b	ENSGT00940000165754	ENSGT00390000014069.a	ENSGT00940000162179.e.b.a.b	ENSGT00390000009194	ENSGT00940000158259.a	ENSGT00940000159294	ENSGT00940000154004.a.e.a	ENSGT00390000003849	ENSGT01060000252586	ENSGT00940000168894	ENSGT00670000098480	ENSGT00390000002854 #22	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.a	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00390000014380.h.b.b.i.a	ENSGT00940000166734	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144
Oryzias	ANCESTRAL SPECIES	25													ENSGT00940000168894	ENSGT00670000098480.p	ENSGT00600000084860.A.b	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154505.B #24	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00940000165457.a.b #28	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144	ENSGT01100000263491.a.b.a.a.b.b.a	ENSGT01100000263533.b.b.a.a.a.a.a.b	ENSGT01010000222572	ENSGT00940000158506
Oryzias_b	ANCESTRAL SPECIES	28	ENSGT00950000183052.b.c.b.b.b.a.b.a.g.a	ENSGT01000000219530	ENSGT00950000183052.b.c.b.b.b.a.b.a.h	ENSGT00940000155594.d	ENSGT00940000159566	ENSGT01030000234607.A.a.a.b	ENSGT00940000165754	ENSGT00390000014069.a	ENSGT00940000162179.e.b.a.b	ENSGT00390000009194	ENSGT00940000158259.a	ENSGT00940000159294	ENSGT00940000154004.a.e.a	ENSGT00390000003849	ENSGT00600000084860.A.b	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154505.B #24	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00940000165457.a.b #28	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144	ENSGT01100000263491.a.b.a.a.b.b.a	ENSGT01100000263533.b.b.a.a.a.a.a.b	ENSGT00940000158506	ENSGT00940000159760
Indian medaka	MODERN SPECIES	7	ENSOMEG00000022185	afg3l2 (ENSOMEG00000022132)	fastk (ENSOMEG00000022058)	ubtfl (ENSOMEG00000021993)	tmub1 (ENSOMEG00000021900)	ENSOMEG00000021889	ttc19 (ENSOMEG00000021879)	SLC4A2 (ENSOMEG00000021761)	ENSOMEG00000021482	ENSOMEG00000021458	ENSOMEG00000021445	adhfe1 (ENSOMEG00000021433)	ENSOMEG00000021410	ENSOMEG00000021389	ENSOMEG00000021363	VCPIP1 (ENSOMEG00000021348) #22	DUSP28 (ENSOMEG00000021328) #23	proca (ENSOMEG00000000567) #24	ENSOMEG00000000564 #25	saga (ENSOMEG00000021274) #26	cldn15la (ENSOMEG00000021231) #27	ENSOMEG00000021213 #28	slc39a6 (ENSOMEG00000021186) #33	ENSOMEG00000021147	cavin4a (ENSOMEG00000021141) #35	ENSOMEG00000021134	ift57 (ENSOMEG00000021115) #36	tmem71 (ENSOMEG00000021061)	ENSOMEG00000020986	ENSOMEG00000020943	ENSOMEG00000020960
Javanese ricefish	MODERN SPECIES	8	ENSOJAG00000020768	ENSOJAG00000020692	afg3l2 (ENSOJAG00000020413)	fastk (ENSOJAG00000020368)	ubtfl (ENSOJAG00000019772)	tmub1 (ENSOJAG00000019754)	ENSOJAG00000019740	ttc19 (ENSOJAG00000019732)	SLC4A2 (ENSOJAG00000019575)	ENSOJAG00000019558	trim55a (ENSOJAG00000019538)	ENSOJAG00000019531	adhfe1 (ENSOJAG00000019476)	ENSOJAG00000019456	ENSOJAG00000019442	VCPIP1 (ENSOJAG00000019434) #22	DUSP28 (ENSOJAG00000019424) #23	proca (ENSOJAG00000019413) #24	ENSOJAG00000019347 #25	saga (ENSOJAG00000019237) #26	cldn15la (ENSOJAG00000019218) #27	ENSOJAG00000019199 #28	slc39a6 (ENSOJAG00000019193) #33	ENSOJAG00000019159 #34	cavin4a (ENSOJAG00000019154) #35	ENSOJAG00000019133	ift57 (ENSOJAG00000018825) #36	tmem71 (ENSOJAG00000018796)	ENSOJAG00000018776	ENSOJAG00000018772	dnaaf11 (ENSOJAG00000018746)
Oryzias_a	ANCESTRAL SPECIES	25													ENSGT00940000168894	ENSGT00670000098480.p	ENSGT00600000084860.A.b	ENSGT00390000002854 #22	ENSGT01100000263489.a.a.b.b.e.a.b.a	ENSGT00940000161528 #23	ENSGT00940000154505.B #24	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00940000165457.a.b #28	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144	ENSGT01100000263491.a.b.a.a.b.b.a	ENSGT01100000263533.b.b.a.a.a.a.a.b	ENSGT01010000222572
Japanese Medaka HdrR	MODERN SPECIES	8	DNAJC5B (ENSORLG00000027951)	TRIM55 (ENSORLG00000006855)	ENSORLG00000006816	adhfe1 (ENSORLG00000006809)	ENSORLG00000022229	ENSORLG00000022962	ENSORLG00000022571	ENSORLG00000022906	ENSORLG00000022273	ENSORLG00000024244	ENSORLG00000022714	ENSORLG00000007120	ENSORLG00000013702	ENSORLG00000023051	ENSORLG00000022093	VCPIP1 (ENSORLG00000006746) #22	ENSORLG00000027967	DUSP28 (ENSORLG00000006743) #23	proca (ENSORLG00000006735) #24	ENSORLG00000025236 #25	saga (ENSORLG00000006701) #26	cldn15la (ENSORLG00000006634) #27	ENSORLG00000027173 #28	slc39a6 (ENSORLG00000006625) #33	ENSORLG00000006605 #34	cavin4a (ENSORLG00000029222) #35	ENSORLG00000021885	ift57 (ENSORLG00000006591) #36	tmem71 (ENSORLG00000026297)	ENSORLG00000025392	ENSORLG00000027494
Chinese medaka	MODERN SPECIES	440																VCPIP1 (ENSOSIG00000006656) #22	ENSOSIG00000006657	DUSP28 (ENSOSIG00000006659) #23	proca (ENSOSIG00000006661) #24	ENSOSIG00000006665 #25	ENSOSIG00000006666	slc39a6 (ENSOSIG00000006668) #33
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00940000166185 #17	ENSGT00910000148528	ENSGT00940000155924.b #16	ENSGT00940000160470 #15	ENSGT00950000183179.a #14	ENSGT00940000159409	ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT01100000263507.E.a.b.a.a.b.b.c.a.b	ENSGT01100000263507.E.a.b.a.a.b.b.c.b	ENSGT00940000155285.b.i	ENSGT00670000098480	ENSGT00940000168894	ENSGT01090000261032	ENSGT00390000002854 #22	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.a	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00940000166734.z	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00390000014380.h.b.b.i.a	ENSGT00500000044904.a.a.a #30	ENSGT00940000166734.y	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35
Aplocheiloidei	ANCESTRAL SPECIES	78						ENSGT00940000166185 #17	ENSGT00940000155924.b #16	ENSGT00940000160470 #15	ENSGT00950000183179.a #14	ENSGT00940000159409	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT01100000263507.E.a.b.a.a.b.b.c.a.b	ENSGT00940000155285.b.i	ENSGT01090000261032	ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00940000165457.a.b #28	ENSGT00940000166734.y	ENSGT00940000156387 #33	ENSGT00940000177172.a.b	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144	ENSGT01100000263491.a.b.a.a.b.b.a	ENSGT01100000263491.b	ENSGT01100000263533.b.b.a.a.a.a.a.b
Mangrove rivulus	MODERN SPECIES	792																VCPIP1 (ENSKMAG00000019819) #22	ENSKMAG00000019828	DUSP28 (ENSKMAG00000019835) #23	ENSKMAG00000019842	ENSKMAG00000019849 #25	saga (ENSKMAG00000019872) #26	ENSKMAG00000019959
Turquoise killifish	MODERN SPECIES	1618	ENSNFUG00015011812 #15	NMNAT2 (ENSNFUG00015011833) #14	dlg1b (ENSNFUG00015012232)	ENSNFUG00015019476	PHB2 (ENSNFUG00015019484) #20	FAM49BA (ENSNFUG00015019501) #21	ENSNFUG00015019596	ENSNFUG00015019602	ENSNFUG00015019609	ENSNFUG00015019612	ENSNFUG00015019615	ENSNFUG00015019618	ENSNFUG00015019625	ENSNFUG00015019627	ENSNFUG00015019636	VCPIP1 (ENSNFUG00015019644) #22	DUSP28 (ENSNFUG00015019652) #23	PROC (ENSNFUG00015019661) #24	ENSNFUG00015019675 #25	SAGA (ENSNFUG00015019730) #26	cldn15la (ENSNFUG00015020251) #27	ENSNFUG00015020257 #28	slc39a6 (ENSNFUG00015020258) #33	ENSNFUG00015020264	TMEFF1B (ENSNFUG00015020265) #34	cavin4a (ENSNFUG00015020267) #35	ENSNFUG00015020268	ENSNFUG00015020270	ZNF622 (ENSNFUG00015020274)	ENSNFUG00015020280	MYO10 (ENSNFUG00015020291)
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00940000158333 #13	ENSGT00940000157702 #18	ENSGT00940000166185 #17	ENSGT00910000148528	ENSGT00940000155924.b #16	ENSGT00940000160470 #15	ENSGT00950000183179.a #14	ENSGT00950000183307	ENSGT00950000183070.a.a.mb.a #20	ENSGT00390000015159.b.b #21	ENSGT01100000263507.E.a.b.a.a.b.b.c.b	ENSGT00940000155285.b.i	ENSGT00670000098480	ENSGT00940000168894	ENSGT01090000261032	ENSGT00390000002854 #22	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.a	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00970000193381.a.a.a.a.b.b.a.b	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00940000166734.z	ENSGT00390000014380.h.b.b.i.a.d.a	ENSGT00500000044904.a.a.a #30	ENSGT00940000166734.y	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35
Poeciliinae	ANCESTRAL SPECIES	6												ENSGT00670000098480.q.a.b.b	ENSGT00940000168894	ENSGT00670000098480.q.a.b.a	ENSGT01090000261032	ENSGT00390000002854 #22	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.a	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00970000193381.a.a.a.a.b.b.a.b	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00940000166734.z.c	ENSGT00390000014380.h.b.b.i.a.d.a	ENSGT00940000166734.y	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35
Poecilia	ANCESTRAL SPECIES	51														ENSGT00670000098480.q.a.b.b	ENSGT01090000261032	ENSGT00390000002854 #22	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.a	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00970000193381.a.a.a.a.b.b.a.b	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354	ENSGT00500000044904.a.a.b.a.b #29	ENSGT00390000014380.h.b.b.i.a.d.a	ENSGT00940000166734.y	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36
NAME_6	ANCESTRAL SPECIES	460															ENSGT01090000261032	ENSGT00390000002854 #22	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.a.a.a.b.a	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25
Amazon molly	MODERN SPECIES	861											ENSPFOG00000023951	ENSPFOG00000005598	ENSPFOG00000005592	ENSPFOG00000022564	ENSPFOG00000022571	VCPIP1 (ENSPFOG00000005539) #22	ENSPFOG00000005528	DUSP28 (ENSPFOG00000005515) #23	ENSPFOG00000005309	ENSPFOG00000005247 #25	ENSPFOG00000005240	ENSPFOG00000005222
Sailfin molly	MODERN SPECIES	2481																VCPIP1 (ENSPLAG00000007445) #22	ENSPLAG00000007464	DUSP28 (ENSPLAG00000000153) #23	ENSPLAG00000007515	ENSPLAG00000007535 #25	ENSPLAG00000007547	saga (ENSPLAG00000007625) #26
Guppy	MODERN SPECIES	30								ENSPREG00000003483	ENSPREG00000003511	ENSPREG00000003523	ENSPREG00000003532	ENSPREG00000003555	ENSPREG00000003567	ENSPREG00000003577	ENSPREG00000003593	VCPIP1 (ENSPREG00000003624) #22	ENSPREG00000003650	DUSP28 (ENSPREG00000003654) #23	ENSPREG00000003670	ENSPREG00000003698 #25	saga (ENSPREG00000003725) #26	cldn15la (ENSPREG00000003756) #27	ENSPREG00000003776	ENSPREG00000003786
Platyfish	MODERN SPECIES	20	PHB2 (ENSXMAG00000003875) #20	fam49ba (ENSXMAG00000003888) #21	ENSXMAG00000003897	ENSXMAG00000027640	ENSXMAG00000029552	ENSXMAG00000026601	ENSXMAG00000029039	ENSXMAG00000025046	ENSXMAG00000022297	ENSXMAG00000026932	ENSXMAG00000021436	ENSXMAG00000023778	ENSXMAG00000026767	ENSXMAG00000026079	ENSXMAG00000021809	VCPIP1 (ENSXMAG00000020911) #22	ENSXMAG00000028075	DUSP28 (ENSXMAG00000013111) #23	ENSXMAG00000028768	ENSXMAG00000025735 #25	saga (ENSXMAG00000013070) #26	cldn15la (ENSXMAG00000013064) #27	ENSXMAG00000030016	ENSXMAG00000022115	ENSXMAG00000023457	ENSXMAG00000022709	ENSXMAG00000024425	slc39a6 (ENSXMAG00000000138) #33	ENSXMAG00000022947 #34	cavin4a (ENSXMAG00000000151) #35	ift57 (ENSXMAG00000000153) #36
NAME_4	ANCESTRAL SPECIES	358																ENSGT00390000002854 #22	ENSGT00940000161528 #23	ENSGT00940000154474.C	ENSGT00940000155435.B.b #25	ENSGT00970000193381.a.a.a.a.b.b.a.b	ENSGT00950000182887.C.b.a.m.a #26	ENSGT00940000166956 #27	ENSGT00510000048354
Sheepshead minnow	MODERN SPECIES	1229													ENSCVAG00000020745	ENSCVAG00000020789	ENSCVAG00000020793	VCPIP1 (ENSCVAG00000000535) #22	DUSP28 (ENSCVAG00000020808) #23	ENSCVAG00000020819	ENSCVAG00000000538 #25	ENSCVAG00000020885	saga (ENSCVAG00000021078) #26	cldn15la (ENSCVAG00000021100) #27	ENSCVAG00000021111
Mummichog	MODERN SPECIES	1084																VCPIP1 (ENSFHEG00000001088) #22	DUSP28 (ENSFHEG00000001087) #23	ENSFHEG00000001085	ENSFHEG00000001082 #25	saga (ENSFHEG00000001075) #26	ENSFHEG00000001067
Tiger tail seahorse	MODERN SPECIES	240	ENSHCOG00000012872	WDR33 (ENSHCOG00000012860)	sft2d3 (ENSHCOG00000012850)	ENSHCOG00000012841	ENSHCOG00000012835	ENSHCOG00000012813	ENSHCOG00000012804 #13	nmnat2 (ENSHCOG00000012783) #14	ENSHCOG00000012765 #15	ENSHCOG00000012742 #21	ptmab (ENSHCOG00000012720)	ENSHCOG00000012704 #19	RASAL2 (ENSHCOG00000012661) #18	lamc1 (ENSHCOG00000012598) #17	ENSHCOG00000000657	VCPIP1 (ENSHCOG00000012530) #22	DUSP28 (ENSHCOG00000012517) #23	ENSHCOG00000012510	saga (ENSHCOG00000012479) #26	cldn15la (ENSHCOG00000012201) #27	ENSHCOG00000012192	slc39a6 (ENSHCOG00000012177) #33	ENSHCOG00000012105 #34	cavin4a (ENSHCOG00000012075) #35	ift57 (ENSHCOG00000012063) #36	MYO10 (ENSHCOG00000012049)	ENSHCOG00000011982	adcy8 (ENSHCOG00000011964)	efr3a (ENSHCOG00000011935)	KCNQ3 (ENSHCOG00000011878)	dnaaf11 (ENSHCOG00000011836)
Pinecone sodierfish	MODERN SPECIES	8	ENSMMDG00005002485	ENSMMDG00005002487	ARMC1 (ENSMMDG00005002490)	PDE7A (ENSMMDG00005002507)	DNAJC5B (ENSMMDG00005003247)	trim55a (ENSMMDG00005003316)	TRIM55 (ENSMMDG00005003333)	ENSMMDG00005003336	TRIM55 (ENSMMDG00005003340)	ENSMMDG00005003345	ENSMMDG00005003347	TRIM55 (ENSMMDG00005003350)	ENSMMDG00005003356	adhfe1 (ENSMMDG00005003363)	ENSMMDG00005003384	VCPIP1 (ENSMMDG00005003388) #22	ENSMMDG00005003390	ccr9a (ENSMMDG00005003394)	bfsp2 (ENSMMDG00005003395)	klhl18 (ENSMMDG00005003401)	ENSMMDG00005003412	afg3l2 (ENSMMDG00005003504)	fastk (ENSMMDG00005007142)	ubtfl (ENSMMDG00005007442)	ENSMMDG00005007916	slc4a2a (ENSMMDG00005007921)	ENSMMDG00005008380	ttc19 (ENSMMDG00005008384)	ENSMMDG00005008389	ENSMMDG00005008397	tmub1 (ENSMMDG00005008404)
Cod	MODERN SPECIES	21	ENSGMOG00000018633	ENSGMOG00000028873	ENSGMOG00000036793	ENSGMOG00000006478	ttc19 (ENSGMOG00000018603)	ENSGMOG00000017092	ubtfl (ENSGMOG00000009475)	fastk (ENSGMOG00000031966)	ENSGMOG00000009444	klhl18 (ENSGMOG00000032838)	bfsp2 (ENSGMOG00000009887)	ccr9a (ENSGMOG00000020520)	ENSGMOG00000009901	ENSGMOG00000009915	ENSGMOG00000010109 #21	ENSGMOG00000011488 #22	ENSGMOG00000011461	adhfe1 (ENSGMOG00000011449)	ENSGMOG00000020152	trim55a (ENSGMOG00000011441)	DNAJC5B (ENSGMOG00000011434)	PDE7A (ENSGMOG00000009223)	ARMC1 (ENSGMOG00000023013)	CYP7B1 (ENSGMOG00000029473)	ENSGMOG00000023921	ENSGMOG00000026741 ##7	ENSGMOG00000036515	ENSGMOG00000009139 ##7	ENSGMOG00000030189 ##7	ENSGMOG00000033320	ENSGMOG00000023406
Protacanthopterygii	ANCESTRAL SPECIES	55	ENSGT00940000155002.b.e.b	ENSGT00940000157252.m.a	ENSGT00930000150950.a.d	ENSGT00390000018475	ENSGT00940000157755.q	ENSGT00950000182997.a.a	ENSGT00940000156942	ENSGT00940000158089.a	ENSGT00940000156086.c	ENSGT00940000154095.b.a.a.a	ENSGT00390000001710	ENSGT00950000183021.a.a.a.b	ENSGT01080000257410.B.a.a.a.i	ENSGT00390000015084.c.b	ENSGT00940000177201	ENSGT00390000002854 #22	ENSGT00940000157709.j	ENSGT00390000003849	ENSGT00940000154473.a.f	ENSGT00940000154004.a.e.a	ENSGT00940000159294	ENSGT00940000157709.i	ENSGT00390000005213	ENSGT00940000154473.a.e	ENSGT00940000154004.a.e.b	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00940000162962	ENSGT01060000251044	ENSGT00940000158777
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	128	ENSGT00940000155002.b.e.b.n	ENSGT00940000157252.m.a.a	ENSGT00930000150950.a.d.b	ENSGT00390000018475.c	ENSGT00940000157755.q.a	ENSGT00950000182997.a.a.d.b	ENSGT00940000156942.o	ENSGT00940000158089.a.a	ENSGT00940000156086.c.f	ENSGT00940000154095.b.a.a.a.b	ENSGT00390000001710	ENSGT00950000183021.a.a.a.b.b	ENSGT01080000257410.B.a.a.a.i.a	ENSGT00940000157108.u.a	ENSGT00390000015084.c.b.d	ENSGT00390000002854.i #22	ENSGT00940000157709.j	ENSGT00390000003849	ENSGT00940000154473.a.f.a	ENSGT00940000154004.a.e.a.f	ENSGT00940000159294.f.a.b	ENSGT00940000157658.bb.a	ENSGT00390000014100.k.a.d	ENSGT00940000153141.B.b.i	ENSGT00940000162962.d.b	ENSGT01030000234557.A.f.e.b.b.b.a.a ##7	ENSGT01050000245529.B	ENSGT00830000128446.a.d.n	ENSGT01030000234557.A.f.f.a.b ##7	ENSGT01030000234557.A.e.a.b.b ##7
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000157252.m.a.a	ENSGT00930000150950.a.d.b	ENSGT00390000018475.c	ENSGT00940000157755.q.a	ENSGT00950000182997.a.a.d.b	ENSGT00940000156942.o	ENSGT00940000158089.a.a	ENSGT00940000156086.c.f	ENSGT00940000154095.b.a.a.a.b	ENSGT00390000001710	ENSGT00950000183021.a.a.a.b.b	ENSGT01000000221499	ENSGT01080000257410.B.a.a.a.i.a	ENSGT00940000157108.u.a	ENSGT00390000015084.c.b.d	ENSGT00390000002854.i #22	ENSGT00940000157709.j	ENSGT00390000003849	ENSGT00940000154473.a.f.a	ENSGT00940000154004.a.e.a.f	ENSGT00940000159294.f.a.b	ENSGT00940000157658.bb.a	ENSGT00390000014100.k.a.d	ENSGT00940000153141.B.b.i	ENSGT00940000162962.d.b	ENSGT01030000234557.A.f.e.b.b.b.a.a ##7	ENSGT00940000179953.c	ENSGT00940000171785	ENSGT00990000211323	ENSGT00940000158333.i #13	ENSGT00950000183179.a.p #14
Salmo	ANCESTRAL SPECIES	35	ENSGT00940000157252.m.a.a	ENSGT00930000150950.a.d.b	ENSGT00390000018475.c	ENSGT00940000157755.q.a	ENSGT00950000182997.a.a.d.b	ENSGT00940000156942.o	ENSGT00940000158089.a.a	ENSGT00940000156086.c.f	ENSGT00940000154095.b.a.a.a.b	ENSGT00390000001710.c	ENSGT00950000183021.a.a.a.b.b	ENSGT01000000221499	ENSGT01080000257410.B.a.a.a.i.a	ENSGT00940000157108.u.a	ENSGT00390000015084.c.b.d	ENSGT00390000002854.i #22	ENSGT00940000157709.j.a	ENSGT00390000003849	ENSGT00940000154473.a.f.a	ENSGT00940000154004.a.e.a.f	ENSGT00940000159294.f.a.b	ENSGT00940000157658.bb.a	ENSGT00390000014100.k.a.d	ENSGT00940000153141.B.b.i	ENSGT00940000162962.d.b	ENSGT00990000205750.A.a	ENSGT01030000234557.A.f.f.a.a.b.a.a ##7	ENSGT01030000234557.A.f.f.b.b.a.a.a.b.a ##7	ENSGT01030000234557.A.f.f.a.a.a.b.b ##7	ENSGT01030000234557.A.f.f.a.b.c.b ##7	ENSGT01030000234557.A.f.f.a.a.a.b.a ##7
River trout	MODERN SPECIES	13	PFKP (ENSSTUG00000033191)	ENSSTUG00000043772	ENSSTUG00000043773	wdr37 (ENSSTUG00000043778)	gtpbp4 (ENSSTUG00000043830)	LARP4B (ENSSTUG00000044124)	DIP2C (ENSSTUG00000044335)	zmynd11 (ENSSTUG00000049108)	VIPR2 (ENSSTUG00000049219)	ESYT2 (ENSSTUG00000049287)	ENSSTUG00000049670	LACTB2 (ENSSTUG00000049714)	SLCO5A1 (ENSSTUG00000049715)	ENSSTUG00000049796	ENSSTUG00000050626	VCPIP1 (ENSSTUG00000050627) #22	MYBL1 (ENSSTUG00000050629)	adhfe1 (ENSSTUG00000050630)	CRH (ENSSTUG00000050633)	trim55a (ENSSTUG00000050636)	DNAJC5B (ENSSTUG00000050640)	PDE7A (ENSSTUG00000050652)	ARMC1 (ENSSTUG00000050680)	CYP7B1 (ENSSTUG00000050681)	ENSSTUG00000050682	ENSSTUG00000050686 ##7	ENSSTUG00000050684 ##7	ENSSTUG00000050687 ##7	ENSSTUG00000050688 ##7	ENSSTUG00000050689	ENSSTUG00000050690
Atlantic salmon	MODERN SPECIES	5	WDR37 (ENSSSAG00000063768)	gtpbp4 (ENSSSAG00000064168)	LARP4B (ENSSSAG00000064325)	DIP2C (ENSSSAG00000064419)	ZMYND11 (ENSSSAG00000065801)	ENSSSAG00000065829	ESYT2 (ENSSSAG00000065891)	ENSSSAG00000085124	ENSSSAG00000066103	lactb2 (ENSSSAG00000066178)	NCOA2 (ENSSSAG00000066235)	ENSSSAG00000067346	ENSSSAG00000067369	ENSSSAG00000067461	ENSSSAG00000069200	VCPIP1 (ENSSSAG00000069210) #22	MYBL1 (ENSSSAG00000069211)	adhfe1 (ENSSSAG00000069219)	CRH (ENSSSAG00000069223)	trim55a (ENSSSAG00000069228)	DNAJC5B (ENSSSAG00000069237)	PDE7A (ENSSSAG00000079062)	ARMC1 (ENSSSAG00000096823)	CYP7B1 (ENSSSAG00000070059)	ENSSSAG00000070068 ##7	ENSSSAG00000121833 ##7	ENSSSAG00000070072 ##7	ENSSSAG00000119772	ENSSSAG00000082326	ENSSSAG00000070085	ENSSSAG00000070087 ##7
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00940000155002.b.e.b.n	ENSGT00940000157252.m.a.a	ENSGT00930000150950.a.d.b	ENSGT00390000018475.c	ENSGT00940000157755.q.a	ENSGT00950000182997.a.a.d.b	ENSGT00940000156942.o	ENSGT00940000158089.a.a	ENSGT00940000156086.c.f	ENSGT00940000154095.b.a.a.a.b	ENSGT00390000001710	ENSGT00950000183021.a.a.a.b.b	ENSGT01000000221499	ENSGT01080000257410.B.a.a.a.i.a	ENSGT00390000015084.c.b.d	ENSGT00390000002854.i #22	ENSGT00940000157709.j	ENSGT00390000003849.j	ENSGT00940000154473.a.f.a	ENSGT00940000154004.a.e.a.f	ENSGT00940000159294.f.a.b	ENSGT00940000157658.bb.a	ENSGT00390000014100.k.a.d	ENSGT00940000153141.B.b.i	ENSGT00940000162962.d.b	ENSGT01030000234557.A.f.e.b.b.b.a.a ##7	ENSGT01030000234557.A.f.e.b.a ##7	ENSGT01030000234557.A.f.f.a.a.b.a.b ##7	ENSGT01030000234557.A.f.e.a ##7	ENSGT01030000234557.A.f.f.b.a ##7	ENSGT01030000234557.A.f.f.a.a.a.a.a ##7
Oncorhynchus_a	ANCESTRAL SPECIES	37	ENSGT00390000018381.l	ENSGT00940000155002.b.e.b.n	ENSGT00940000157252.m.a.a	ENSGT00930000150950.a.d.b	ENSGT00390000018475.c	ENSGT00940000157755.q.a	ENSGT00950000182997.a.a.d.b	ENSGT00940000156942.o	ENSGT00940000158089.a.a	ENSGT00940000156086.c.f	ENSGT00940000154095.b.a.a.a.b	ENSGT00390000001710	ENSGT00950000183021.a.a.a.b.b	ENSGT01000000221499	ENSGT01080000257410.B.a.a.a.i.a	ENSGT00390000002854.i #22	ENSGT00940000157709.j	ENSGT00390000003849.j	ENSGT00940000154473.a.f.a	ENSGT00940000154004.a.e.a.f	ENSGT00940000159294.f.a.b	ENSGT00940000157658.bb.a	ENSGT00390000014100.k.a.d	ENSGT00940000153141.B.b.i	ENSGT00940000162962.d.b	ENSGT01030000234557.A.f.e.b.b.b.a.a ##7	ENSGT01030000234557.A.f.f.a.b.c.a.c ##7	ENSGT00990000205750.B.a	ENSGT01030000234557.A.f.e.b.a ##7	ENSGT01030000234557.A.f.f.a.a.b.a.b ##7	ENSGT01030000234557.A.f.f.a.b.c.b.a.a ##7
Chinook salmon	MODERN SPECIES	1	PFKP (ENSOTSG00005044734)	ADARB2 (ENSOTSG00005044930)	wdr37 (ENSOTSG00005044936)	gtpbp4 (ENSOTSG00005045006)	LARP4B (ENSOTSG00005045008)	DIP2C (ENSOTSG00005045046)	zmynd11 (ENSOTSG00005046624)	VIPR2 (ENSOTSG00005046625)	ESYT2 (ENSOTSG00005046626)	ENSOTSG00005046628	LACTB2 (ENSOTSG00005046631)	NCOA2 (ENSOTSG00005001196)	ENSOTSG00005007012	SLCO5A1 (ENSOTSG00005007013)	trim55a (ENSOTSG00005007015)	VCPIP1 (ENSOTSG00005007016) #22	MYBL1 (ENSOTSG00005007017)	adhfe1 (ENSOTSG00005007018)	CRH (ENSOTSG00005007020)	DNAJC5B (ENSOTSG00005007021)	PDE7A (ENSOTSG00005007030)	ARMC1 (ENSOTSG00005007830)	CYP7B1 (ENSOTSG00005007831)	ENSOTSG00005007832	ENSOTSG00005007834 ##7	ENSOTSG00005007835 ##7	ENSOTSG00005007837 ##7	ENSOTSG00005007839 ##7	ENSOTSG00005007841 ##7	ENSOTSG00005007842 ##7	ENSOTSG00005007843 ##7
Coho salmon	MODERN SPECIES	23	pitrm1 (ENSOKIG00005047813)	PFKP (ENSOKIG00005048278)	ADARB2 (ENSOKIG00005048488)	wdr37 (ENSOKIG00005048496)	gtpbp4 (ENSOKIG00005048534)	LARP4B (ENSOKIG00005020353)	DIP2C (ENSOKIG00005020480)	zmynd11 (ENSOKIG00005020884)	VIPR2 (ENSOKIG00005021048)	ESYT2 (ENSOKIG00005021254)	ENSOKIG00005023470	LACTB2 (ENSOKIG00005023560)	NCOA2 (ENSOKIG00005023613)	ENSOKIG00005023936	SLCO5A1 (ENSOKIG00005023950)	VCPIP1 (ENSOKIG00005023986) #22	MYBL1 (ENSOKIG00005023999)	adhfe1 (ENSOKIG00005024015)	CRH (ENSOKIG00005024071)	trim55a (ENSOKIG00005024094)	DNAJC5B (ENSOKIG00005024149)	PDE7A (ENSOKIG00005024240)	ARMC1 (ENSOKIG00005024835)	CYP7B1 (ENSOKIG00005024851)	ENSOKIG00005024864	ENSOKIG00005024871 ##7	ENSOKIG00005024879 ##7	ENSOKIG00005024888	ENSOKIG00005024953 ##7	ENSOKIG00005024910 ##7	ENSOKIG00005024972 ##7
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000075064	WDR37 (ENSOMYG00000013798)	GTPBP4 (ENSOMYG00000014047)	LARP4B (ENSOMYG00000014234)	DIP2C (ENSOMYG00000015670)	ZMYND11 (ENSOMYG00000037706)	ENSOMYG00000037795	ESYT2 (ENSOMYG00000038048)	ENSOMYG00000038255	ENSOMYG00000048985	ENSOMYG00000038311	NCOA2 (ENSOMYG00000038755)	ENSOMYG00000040067	ENSOMYG00000056136	ENSOMYG00000040086	VCPIP1 (ENSOMYG00000040139) #22	ENSOMYG00000057753	MYBL1 (ENSOMYG00000040158)	adhfe1 (ENSOMYG00000040181)	CRH (ENSOMYG00000040191)	trim55a (ENSOMYG00000040213)	DNAJC5B (ENSOMYG00000040228)	PDE7A (ENSOMYG00000040279)	ARMC1 (ENSOMYG00000040392)	ENSOMYG00000064656	CYP7B1 (ENSOMYG00000040414)	ENSOMYG00000040423	ENSOMYG00000040431 ##7	ENSOMYG00000040443 ##7	ENSOMYG00000057195 ##7	ENSOMYG00000073464 ##7
Huchen	MODERN SPECIES	253						ENSHHUG00000033873	zmynd11 (ENSHHUG00000035869)	VIPR2 (ENSHHUG00000036160)	ESYT2 (ENSHHUG00000036425)	ENSHHUG00000036580	LACTB2 (ENSHHUG00000036607)	ENSHHUG00000036612	SLCO5A1 (ENSHHUG00000036761)	ENSHHUG00000036763	ENSHHUG00000036819	VCPIP1 (ENSHHUG00000036840) #22	MYBL1 (ENSHHUG00000036844)	adhfe1 (ENSHHUG00000036851)	CRH (ENSHHUG00000036881)	trim55a (ENSHHUG00000036886)	DNAJC5B (ENSHHUG00000036916)	PDE7A (ENSHHUG00000036935)	ARMC1 (ENSHHUG00000036952)	CYP7B1 (ENSHHUG00000036959)	ENSHHUG00000036966	ENSHHUG00000036972 ##7	ENSHHUG00000036975 ##7	ENSHHUG00000036977 ##7	ENSHHUG00000036980 ##7
Salmoninae	ANCESTRAL SPECIES	129						ENSGT00950000182997.a.a.d.a	ENSGT00940000156942.p	ENSGT00940000158089.a.b	ENSGT00940000156086.c.e	ENSGT00940000154095.b.a.a.a.a	ENSGT00950000183021.a.a.a.b.a	ENSGT01080000257410.B.a.a.a.i.b	ENSGT00940000157108.u.b	ENSGT00390000015084.c.b.c	ENSGT00940000177201.a.b	ENSGT00390000002854.j #22	ENSGT00940000156248.e.a	ENSGT00940000154473.a.f.b	ENSGT00940000154004.a.e.a.e	ENSGT00940000159294.f.a.a	ENSGT00940000157658.bb.b	ENSGT00390000014100.k.a.c	ENSGT00940000153141.B.b.j	ENSGT00940000162962.d.a	ENSGT00940000158333.j #13	ENSGT00950000183179.a.o #14	ENSGT00940000158069.e	ENSGT00940000166185.a #17	ENSGT00940000161173	ENSGT00940000155924.b.e #16	ENSGT00940000157702.p #18
Huchen	MODERN SPECIES	21						zmynd11 (ENSHHUG00000016352)	ENSHHUG00000016055	ESYT2 (ENSHHUG00000015564)	ENSHHUG00000015547	ENSHHUG00000015524	ENSHHUG00000015427	SLCO5A1 (ENSHHUG00000015408)	ARFGEF1 (ENSHHUG00000015350)	ENSHHUG00000015329	ENSHHUG00000015322	VCPIP1 (ENSHHUG00000015320) #22	ENSHHUG00000015313	CRH (ENSHHUG00000015309)	trim55a (ENSHHUG00000015276)	DNAJC5B (ENSHHUG00000015272)	PDE7A (ENSHHUG00000015138)	ARMC1 (ENSHHUG00000015116)	CYP7B1 (ENSHHUG00000015101)	ENSHHUG00000015096	smg7 (ENSHHUG00000014996) #13	nmnat2 (ENSHHUG00000014950) #14	LAMC1 (ENSHHUG00000014924)	lamc1 (ENSHHUG00000014267) #17	SHCBP1L (ENSHHUG00000014222)	dhx9 (ENSHHUG00000014194) #16	RASAL2 (ENSHHUG00000013509) #18
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00940000155002.b.e.b.m	ENSGT00940000157252.m.a.b	ENSGT00930000150950.a.d.a	ENSGT00390000018475.d	ENSGT00940000157755.q.b	ENSGT00950000182997.a.a.d.a	ENSGT00940000156942.p	ENSGT00940000158089.a.b	ENSGT00940000156086.c.e	ENSGT00940000154095.b.a.a.a.a	ENSGT01060000252941	ENSGT00950000183021.a.a.a.b.a	ENSGT01080000257410.B.a.a.a.i.b	ENSGT00940000157108.u.b	ENSGT00390000015084.c.b.c	ENSGT00390000002854.j #22	ENSGT00940000156248.e.a	ENSGT00940000154473.a.f.b	ENSGT00940000154004.a.e.a.e	ENSGT00940000159294.f.a.a	ENSGT00940000157658.bb.b	ENSGT00390000014100.k.a.c	ENSGT00940000153141.B.b.j	ENSGT00940000162962.d.a	ENSGT00940000158333.j #13	ENSGT00950000183179.a.o #14	ENSGT00940000158069.e	ENSGT00940000166185.a #17	ENSGT00940000161173	ENSGT00940000155924.b.e #16	ENSGT00940000157702.p #18
Salmo	ANCESTRAL SPECIES	5	ENSGT00940000155002.b.e.b.m	ENSGT00940000157252.m.a.b	ENSGT00930000150950.a.d.a	ENSGT00390000018475.d	ENSGT00940000157755.q.b	ENSGT00950000182997.a.a.d.a	ENSGT00940000156942.p	ENSGT00940000158089.a.b	ENSGT00940000156086.c.e	ENSGT00940000154095.b.a.a.a.a	ENSGT00390000001710.d	ENSGT00950000183021.a.a.a.b.a	ENSGT01080000257410.B.a.a.a.i.b	ENSGT00940000157108.u.b	ENSGT00390000015084.c.b.c	ENSGT00390000002854.j #22	ENSGT00940000157709.j.b	ENSGT00940000154473.a.f.b	ENSGT00940000154004.a.e.a.e	ENSGT00940000159294.f.a.a	ENSGT00940000157658.bb.b	ENSGT00390000014100.k.a.c	ENSGT00940000153141.B.b.j	ENSGT00940000162962.d.a	ENSGT00940000158333.j #13	ENSGT00950000183179.a.o #14	ENSGT00940000158069.e	ENSGT00940000166185.a #17	ENSGT00940000161173	ENSGT00940000155924.b.e #16	ENSGT00940000157702.p #18
Atlantic salmon	MODERN SPECIES	22	k6pp (ENSSSAG00000067619)	ADARB2 (ENSSSAG00000068694)	ENSSSAG00000089944	WDR37 (ENSSSAG00000068713)	LARP4B (ENSSSAG00000068868)	DIP2C (ENSSSAG00000069231)	zmy11 (ENSSSAG00000077257)	ENSSSAG00000077431	ESYT2 (ENSSSAG00000077474)	ENSSSAG00000077575	ENSSSAG00000077654	ENSSSAG00000077700	ENSSSAG00000078521	ENSSSAG00000078581	ENSSSAG00000079016	ENSSSAG00000079023 #22	crf1 (ENSSSAG00000090569)	trim55a (ENSSSAG00000079038)	DNAJC5B (ENSSSAG00000079053)	PDE7A (ENSSSAG00000069257)	ARMC1 (ENSSSAG00000079240)	CYP7B1 (ENSSSAG00000079242)	ENSSSAG00000104795	smg7 (ENSSSAG00000079262) #13	nmnat2 (ENSSSAG00000096103) #14	LAMC1 (ENSSSAG00000079455)	lamc1 (ENSSSAG00000079485) #17	dhx9 (ENSSSAG00000079588) #16	SHCBP1L (ENSSSAG00000079566)	ENSSSAG00000079626 #18	klhl20 (ENSSSAG00000079688)
River trout	MODERN SPECIES	24	PFKP (ENSSTUG00000029018)	ADARB2 (ENSSTUG00000028986)	wdr37 (ENSSTUG00000028875)	gtpbp4 (ENSSTUG00000028699)	LARP4B (ENSSTUG00000028667)	DIP2C (ENSSTUG00000026400)	zmynd11 (ENSSTUG00000026053)	ENSSTUG00000025929	ESYT2 (ENSSTUG00000021964)	ENSSTUG00000021606	ENSSTUG00000021542	NCOA2 (ENSSTUG00000021409)	SLCO5A1 (ENSSTUG00000021388)	ARFGEF1 (ENSSTUG00000021105)	ENSSTUG00000023009	VCPIP1 (ENSSTUG00000023000) #22	ENSSTUG00000022982	CRH (ENSSTUG00000022973)	trim55a (ENSSTUG00000022946)	DNAJC5B (ENSSTUG00000022941)	PDE7A (ENSSTUG00000022435)	ARMC1 (ENSSTUG00000022417)	CYP7B1 (ENSSTUG00000022403)	ENSSTUG00000022389	smg7 (ENSSTUG00000019502) #13	nmnat2 (ENSSTUG00000019374) #14	LAMC1 (ENSSTUG00000019272)	lamc1 (ENSSTUG00000018487) #17	SHCBP1L (ENSSTUG00000018441)	dhx9 (ENSSTUG00000018383) #16	RASAL2 (ENSSTUG00000017830) #18
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT00940000155002.b.e.b.m	ENSGT00940000157252.m.a.b	ENSGT00930000150950.a.d.a	ENSGT00390000018475.d	ENSGT00940000157755.q.b	ENSGT00950000182997.a.a.d.a	ENSGT00940000156942.p	ENSGT00940000158089.a.b	ENSGT00940000156086.c.e	ENSGT00940000154095.b.a.a.a.a	ENSGT01060000252941	ENSGT00950000183021.a.a.a.b.a	ENSGT01080000257410.B.a.a.a.i.b	ENSGT00940000157108.u.b	ENSGT00390000015084.c.b.c	ENSGT00390000002854.j #22	ENSGT00940000156248.e.a	ENSGT00940000154473.a.f.b	ENSGT00940000154004.a.e.a.e	ENSGT00940000159294.f.a.a	ENSGT00940000157658.bb.b	ENSGT00390000014100.k.a.c	ENSGT00940000153141.B.b.j	ENSGT00940000162962.d.a	ENSGT00940000158333.j #13	ENSGT00950000183179.a.o #14	ENSGT00940000158069.e	ENSGT00940000166185.a #17	ENSGT00940000161173	ENSGT00940000155924.b.e #16	ENSGT00940000157702.p #18
Oncorhynchus_a	ANCESTRAL SPECIES	22	ENSGT00390000018381.k	ENSGT00940000155002.b.e.b.m	ENSGT00940000157252.m.a.b	ENSGT00930000150950.a.d.a	ENSGT00390000018475.d	ENSGT00940000157755.q.b	ENSGT00950000182997.a.a.d.a	ENSGT00940000156942.p	ENSGT00940000158089.a.b	ENSGT00940000156086.c.e	ENSGT00940000154095.b.a.a.a.a	ENSGT00950000183021.a.a.a.b.a	ENSGT01080000257410.B.a.a.a.i.b	ENSGT00940000157108.u.b	ENSGT00940000177201.b	ENSGT00390000002854.j #22	ENSGT00940000154473.a.f.b	ENSGT00940000154004.a.e.a.e	ENSGT00940000159294.f.a.a	ENSGT00940000157658.bb.b	ENSGT00390000014100.k.a.c	ENSGT00940000153141.B.b.j	ENSGT00940000162962.d.a	ENSGT00940000158333.j #13	ENSGT00950000183179.a.o #14	ENSGT00940000158069.e	ENSGT00940000166185.a #17	ENSGT00940000161173	ENSGT00940000155924.b.e #16	ENSGT00940000157702.p #18	ENSGT00390000008829
Chinook salmon	MODERN SPECIES	20	pitrm1 (ENSOTSG00005038353)	PFKP (ENSOTSG00005027612)	ADARB2 (ENSOTSG00005027533)	wdr37 (ENSOTSG00005027493)	gtpbp4 (ENSOTSG00005027485)	LARP4B (ENSOTSG00005027483)	DIP2C (ENSOTSG00005021307)	zmynd11 (ENSOTSG00005021243)	ENSOTSG00005021234	ESYT2 (ENSOTSG00005013930)	ENSOTSG00005013925	NCOA2 (ENSOTSG00005013804)	SLCO5A1 (ENSOTSG00005013799)	ARFGEF1 (ENSOTSG00005013638)	ENSOTSG00005013633	VCPIP1 (ENSOTSG00005013631) #22	CRH (ENSOTSG00005013630)	trim55a (ENSOTSG00005013629)	DNAJC5B (ENSOTSG00005013628)	PDE7A (ENSOTSG00005013611)	ARMC1 (ENSOTSG00005013610)	CYP7B1 (ENSOTSG00005013609)	ENSOTSG00005013608	smg7 (ENSOTSG00005013235) #13	nmnat2 (ENSOTSG00005013226) #14	LAMC1 (ENSOTSG00005013220)	lamc1 (ENSOTSG00005010639) #17	SHCBP1L (ENSOTSG00005010633)	dhx9 (ENSOTSG00005010629) #16	RASAL2 (ENSOTSG00005004510) #18	ankrd45 (ENSOTSG00005004477)
Coho salmon	MODERN SPECIES	19	PFKP (ENSOKIG00005048992)	ADARB2 (ENSOKIG00005048937)	WDR37 (ENSOKIG00005048861)	GTPBP4 (ENSOKIG00005048826)	LARP4B (ENSOKIG00005048811)	ENSOKIG00005048796	DIP2C (ENSOKIG00005045783)	ZMYND11 (ENSOKIG00005045111)	ENSOKIG00005045042	ESYT2 (ENSOKIG00005041299)	ENSOKIG00005040589	NCOA2 (ENSOKIG00005037701)	SLCO5A1 (ENSOKIG00005037419)	ARFGEF1 (ENSOKIG00005036773)	ENSOKIG00005036656	VCPIP1 (ENSOKIG00005036644) #22	CRH (ENSOKIG00005036629)	trim55a (ENSOKIG00005036558)	DNAJC5B (ENSOKIG00005036546)	PDE7A (ENSOKIG00005036265)	ARMC1 (ENSOKIG00005036233)	CYP7B1 (ENSOKIG00005036226)	ENSOKIG00005036220	smg7 (ENSOKIG00005033573) #13	nmnat2 (ENSOKIG00005033379) #14	LAMC1 (ENSOKIG00005033355)	lamc1 (ENSOKIG00005032454) #17	SHCBP1L (ENSOKIG00005032067)	dhx9 (ENSOKIG00005031879) #16	RASAL2 (ENSOKIG00005031264) #18	ankrd45 (ENSOKIG00005031200)
Rainbow trout	MODERN SPECIES	20	WDR37 (ENSOMYG00000043190)	GTPBP4 (ENSOMYG00000043177)	LARP4B (ENSOMYG00000043162)	ENSOMYG00000066801	DIP2C (ENSOMYG00000040491)	ZMYND11 (ENSOMYG00000043122)	ENSOMYG00000039587	ENSOMYG00000065316	ESYT2 (ENSOMYG00000035551)	ENSOMYG00000035026	ENSOMYG00000035007	ENSOMYG00000034920	ENSOMYG00000034811	ENSOMYG00000034688	ENSOMYG00000034572	ENSOMYG00000034560 #22	ENSOMYG00000074929	CRH (ENSOMYG00000034555)	trim55a (ENSOMYG00000034534)	DNAJC5B (ENSOMYG00000034522)	PDE7A (ENSOMYG00000034482)	ARMC1 (ENSOMYG00000034428)	CYP7B1 (ENSOMYG00000034414)	ENSOMYG00000034399	smg7 (ENSOMYG00000030693) #13	nmnat2 (ENSOMYG00000029768) #14	ENSOMYG00000064630	LAMC1 (ENSOMYG00000029743)	lamc1 (ENSOMYG00000027658) #17	SHCBP1L (ENSOMYG00000027076)	dhx9 (ENSOMYG00000026903) #16
Northern pike	MODERN SPECIES	2	wdr37 (ENSELUG00000000316)	gtpbp4 (ENSELUG00000008578)	LARP4B (ENSELUG00000008626)	DIP2C (ENSELUG00000008817)	zmynd11 (ENSELUG00000008968)	ENSELUG00000033439	VIPR2 (ENSELUG00000009056)	ENSELUG00000025630	ESYT2 (ENSELUG00000009227)	ENSELUG00000009348	ENSELUG00000030825	ENSELUG00000009380	NCOA2 (ENSELUG00000009430)	SLCO5A1 (ENSELUG00000009453)	ARFGEF1 (ENSELUG00000009556)	VCPIP1 (ENSELUG00000009622) #22	MYBL1 (ENSELUG00000009644)	adhfe1 (ENSELUG00000009659)	trim55a (ENSELUG00000009701)	CRH (ENSELUG00000009684)	DNAJC5B (ENSELUG00000009718)	PDE7A (ENSELUG00000009801)	DNAJC5 (ENSELUG00000032269)	ARMC1 (ENSELUG00000009824)	ENSELUG00000009854	ENSELUG00000000359	ENSELUG00000031247	ENSELUG00000007009	ENSELUG00000029813	ENSELUG00000033390	EPHB1 (ENSELUG00000006935)
Otomorpha	ANCESTRAL SPECIES	524														ENSGT00390000015084.c.b	ENSGT00940000177201	ENSGT00390000002854 #22	ENSGT01080000257573	ENSGT00940000156248	ENSGT00390000003849	ENSGT00940000154004.a.e.a
Otophysi	ANCESTRAL SPECIES	136														ENSGT00390000015084.c.b	ENSGT00940000177201	ENSGT00390000002854 #22	ENSGT00390000003849	ENSGT00940000154473.b.a.b	ENSGT00940000154004.a.e.a	ENSGT00390000014100.k.a	ENSGT00940000153141.B.b	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144	ENSGT01100000263491.a.b.a.a.b.b.a	ENSGT00390000018475	ENSGT01080000257410.B.a.b.b.a	ENSGT00390000001710	ENSGT00940000154095.b.a.a.a
Characiphysae	ANCESTRAL SPECIES	241														ENSGT00940000154265.lc.a	ENSGT00940000154265.mc	ENSGT00390000002854 #22	ENSGT00390000003849	ENSGT00940000154473.b.a.b	ENSGT00940000154004.a.e.a
Characiphysae_b	ANCESTRAL SPECIES	266													ENSGT00940000153972.A.a	ENSGT00940000154265.lc.a	ENSGT00940000154265.mc	ENSGT00390000002854 #22	ENSGT00390000003849	ENSGT00940000154473.b.a.b	ENSGT00940000154004.a.e.a
Characoidei	ANCESTRAL SPECIES	174													ENSGT00940000153972.A.a	ENSGT00940000154265.lc.a	ENSGT00940000154265.mc	ENSGT00390000002854 #22	ENSGT00390000003849	ENSGT00940000154473.b.a.b	ENSGT00940000154004.a.e.a	ENSGT00390000014100.k.a	ENSGT00940000153141.B.b	ENSGT00940000156387 #33	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144	ENSGT01100000263491.a.b.a.a.b.b.a	ENSGT00390000018475	ENSGT01080000257410.B.a.b.b.a	ENSGT00390000001710	ENSGT00940000154095.b.a.a.a	ENSGT00940000156086.c
Red-bellied piranha	MODERN SPECIES	60	fitm1l (ENSPNAG00000019130)	trnau1apb (ENSPNAG00000019138)	MED26 (ENSPNAG00000019142)	myh7l (ENSPNAG00000019244)	mrpl34 (ENSPNAG00000019266)	ENSPNAG00000019287	urb1 (ENSPNAG00000019324)	med17 (ENSPNAG00000006998)	ENSPNAG00000006597	hephl1a (ENSPNAG00000019398)	panx1a (ENSPNAG00000019410)	gbp1 (ENSPNAG00000019423)	ENSPNAG00000019486	gbp1 (ENSPNAG00000019499)	ENSPNAG00000019576	VCPIP1 (ENSPNAG00000019610) #22	adhfe1 (ENSPNAG00000019662)	ENSPNAG00000003605	trim55a (ENSPNAG00000019745)	ENSPNAG00000019754	PDE7A (ENSPNAG00000019779)	ENSPNAG00000019802	CYP7B1 (ENSPNAG00000019809)	slc39a6 (ENSPNAG00000019823) #33	cavin4a (ENSPNAG00000019829) #35	ift57 (ENSPNAG00000019862) #36	tmem71 (ENSPNAG00000019877)	ENSPNAG00000019887	ENSPNAG00000003616	gtpbp4 (ENSPNAG00000019977)	SLCO5A1 (ENSPNAG00000020001)
Mexicana tetra	MODERN SPECIES	8	adcy8 (ENSAMXG00000009578)	basp1 (ENSAMXG00000031274)	MYO10 (ENSAMXG00000009518)	ENSAMXG00000009452	ENSAMXG00000032413	ESYT2 (ENSAMXG00000039289)	ENSAMXG00000009367	LACTB2 (ENSAMXG00000040262)	SLCO5A1 (ENSAMXG00000019797)	gtpbp4 (ENSAMXG00000019771)	ENSAMXG00000019757	ENSAMXG00000043326	tmem71 (ENSAMXG00000019712)	hephl1a (ENSAMXG00000019667)	panx1a (ENSAMXG00000035510)	VCPIP1 (ENSAMXG00000019645) #22	adhfe1 (ENSAMXG00000019635)	ENSAMXG00000024952	trim55a (ENSAMXG00000019626)	PDE7A (ENSAMXG00000029669)	ENSAMXG00000039934	CYP7B1 (ENSAMXG00000019561)	ENSAMXG00000019544	cavin4a (ENSAMXG00000043004) #35	ift57 (ENSAMXG00000017051) #36	PRKAB2 (ENSAMXG00000017077)	ENSAMXG00000038367	ENSAMXG00000043027	ENSAMXG00000017134	ENSAMXG00000017139	FEM1A (ENSAMXG00000025832)
Electric eel	MODERN SPECIES	559											hephl1a (ENSEEEG00000007459)	ENSEEEG00000007576	med17 (ENSEEEG00000007605)	urb1 (ENSEEEG00000007613)	panx1a (ENSEEEG00000007619)	VCPIP1 (ENSEEEG00000007620) #22	adhfe1 (ENSEEEG00000007623)	trim55a (ENSEEEG00000007629)	PDE7A (ENSEEEG00000007688)	ENSEEEG00000008032
Channel catfish	MODERN SPECIES	12	PIP4P1 (ENSIPUG00000014953)	pih1d3 (ENSIPUG00000014947)	prpf38b (ENSIPUG00000014942)	pitrm1 (ENSIPUG00000014776)	urb1 (ENSIPUG00000014721)	ENSIPUG00000014704	med17 (ENSIPUG00000014647)	cavin4a (ENSIPUG00000014631) #35	ift57 (ENSIPUG00000014541) #36	slc39a6 (ENSIPUG00000014516) #33	GTPBP4 (ENSIPUG00000014417)	ENSIPUG00000014394	tmem71 (ENSIPUG00000014361)	trim55a (ENSIPUG00000014333)	ENSIPUG00000014251	vcpip1 (ENSIPUG00000014233) #22	adhfe1 (ENSIPUG00000014218)	SLCO5A1 (ENSIPUG00000014191)	lactb2 (ENSIPUG00000014168)	ENSIPUG00000014164	ENSIPUG00000014149	ENSIPUG00000014116	Esyt2 (ENSIPUG00000013984)	ENSIPUG00000013667	MYO10 (ENSIPUG00000013577)	basp1 (ENSIPUG00000013564)	adcy8 (ENSIPUG00000013478)	ENSIPUG00000013449	efr3a (ENSIPUG00000013359)	ENSIPUG00000013323	ENSIPUG00000013312
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00390000018047	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b	ENSGT00940000160050	ENSGT00940000160694.h	ENSGT00940000162297.c.a	ENSGT00940000154265.lc.a	ENSGT00390000015084.c.b	ENSGT00940000177201	ENSGT00390000002854 #22	ENSGT00390000003849	ENSGT00940000154473.b.a.b	ENSGT00940000154004.a.e.a	ENSGT00940000153141.B.b	ENSGT00940000156387 #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a #35	ENSGT00390000006307 #36	ENSGT00390000011144	ENSGT00390000012130	ENSGT00390000018475	ENSGT01080000257410.B.a.b.b.a	ENSGT00390000001710	ENSGT00940000154095.b.a.a.a	ENSGT00940000156086.c
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	72	ENSGT00940000154265.mc.k.a.a	ENSGT00940000162297.c.b.b	ENSGT00940000156840.p	ENSGT00940000154265.lc.b.b.a.a.a	ENSGT00940000162297.c.b.a	ENSGT00940000154265.lc.b.b.b	ENSGT00940000154265.lc.a.i.b	ENSGT00940000154265.mc.k.b	ENSGT00940000154265.lc.a.i.a.a	ENSGT00940000154265.mc.l	ENSGT00990000210441	ENSGT00940000177201	ENSGT00390000002854.l #22	ENSGT00940000154265.lc.a.i.a.b	ENSGT00390000015084.c.b	ENSGT00390000002854.k #22	ENSGT00390000003849	ENSGT00940000154473.b.a.b.a	ENSGT00940000154004.a.e.a.h	ENSGT00940000153141.B.b.l	ENSGT00940000156387.ab #33	ENSGT00950000182910.a.b.a.g.b #35	ENSGT00940000154473.b.a.b.b	ENSGT00940000154004.a.e.a.g	ENSGT00940000153141.B.b.k	ENSGT00940000156387.`b #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a.g.a #35	ENSGT00390000006307.w #36	ENSGT00390000011144.a.b	ENSGT00390000012130
Cyprininae_a	ANCESTRAL SPECIES	431														ENSGT00940000154265.lc.a.i.a.b	ENSGT00390000015084.c.b	ENSGT00390000002854.k #22	ENSGT00390000003849.f	ENSGT00940000154473.b.a.b.a	ENSGT00940000154004.a.e.a.h	ENSGT00940000153141.B.b.l	ENSGT00940000156387.ab #33	ENSGT00950000182910.a.b.a.g.a #35	ENSGT00390000006307.w #36	ENSGT00390000011144.a.b	ENSGT01100000263491.a.b.a.a.b.b.a.i.b	ENSGT00390000018475.h	ENSGT01080000257410.B.a.b.b.a.a	ENSGT00390000001710.e.b	ENSGT00940000154095.b.a.a.a.c	ENSGT00940000156086.c.g	ENSGT00950000182997.b.b
Golden-line barbel	MODERN SPECIES	1117														ENSSGRG00000023699	ENSSGRG00000023701	VCPIP1 (ENSSGRG00000023702) #22	adhfe1 (ENSSGRG00000023704)	ENSSGRG00000023755	trim55a (ENSSGRG00000023757)	ENSSGRG00000023758	CYP7B1 (ENSSGRG00000023761)	ENSSGRG00000023763 #33	ENSSGRG00000023766 #33	cavin4a (ENSSGRG00000023768) #35	ift57 (ENSSGRG00000023770) #36	ENSSGRG00000023771	apom (ENSSGRG00000023772)	gtpbp4 (ENSSGRG00000023780)	SLCO5A1 (ENSSGRG00000023963)	LACTB2 (ENSSGRG00000023964)	ENSSGRG00000023968
Common carp reference	MODERN SPECIES	21	acvr1l (ENSCCRG00000062115)	otomp (ENSCCRG00000079751)	d2hgdh (ENSCCRG00000011246)	ENSCCRG00000011779	zgc:110158 (ENSCCRG00000063165)	keap1a (ENSCCRG00000015868)	crlf1a (ENSCCRG00000018065)	odf3l2a (ENSCCRG00000018067)	ENSCCRG00000079340	ENSCCRG00000071871	gbp1 (ENSCCRG00000018101)	ENSCCRG00000018119	ENSCCRG00000051788	gbp1 (ENSCCRG00000033487)	ENSCCRG00000057295	ENSCCRG00000030821 #22	adhfe1 (ENSCCRG00000030828)	trim55a (ENSCCRG00000031000)	ENSCCRG00000082262	ENSCCRG00000077462	slc39a6 (ENSCCRG00000021748) #33	ENSCCRG00000004742 #36	ENSCCRG00000005658	ENSCCRG00000005672	ENSCCRG00000017470	gtpbp4 (ENSCCRG00000017482)	ENSCCRG00000069126	ENSCCRG00000020382	ENSCCRG00000016168	ENSCCRG00000016919	ENSCCRG00000077317
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	11	ENSCARG00000003113	ENSCARG00000003103	ENSCARG00000003094	ENSCARG00000003087	ENSCARG00000003075	ENSCARG00000003065	epha4b (ENSCARG00000002910)	keap1a (ENSCARG00000002888)	crlf1a (ENSCARG00000002875)	odf3l2a (ENSCARG00000002864)	ebi3 (ENSCARG00000002858)	ENSCARG00000002837	ENSCARG00000002815	gbp1 (ENSCARG00000002777)	ENSCARG00000002675	VCPIP1 (ENSCARG00000002656) #22	adhfe1 (ENSCARG00000002442)	ENSCARG00000002397	trim55a (ENSCARG00000002367)	CYP7B1 (ENSCARG00000002351)	slc39a6 (ENSCARG00000002313) #33	cavin4a (ENSCARG00000002294) #35	tmem71 (ENSCARG00000002288)	apom (ENSCARG00000002271)	ENSCARG00000002256	gtpbp4 (ENSCARG00000002206)	hs6st1a (ENSCARG00000002194)	uggt1 (ENSCARG00000001686)	fbp2 (ENSCARG00000001564)	ENSCARG00000001560	ENSCARG00000001556
Goldfish	MODERN SPECIES	11	ENSCARG00000006101 ##14	RBP1 (ENSCARG00000006111)	rbp1.2 (ENSCARG00000006129)	rbp2b (ENSCARG00000006140)	copb2 (ENSCARG00000006255)	rem2 (ENSCARG00000007349)	carmil3 (ENSCARG00000007368)	rem2 (ENSCARG00000007420)	copb2 (ENSCARG00000007476)	rbp2b (ENSCARG00000007586)	rbp1.2 (ENSCARG00000007590)	RBP1 (ENSCARG00000007604)	ENSCARG00000007616 ##14	clstn2a (ENSCARG00000007626)	ENSCARG00000000320	VCPIP1 (ENSCARG00000000430) #22	adhfe1 (ENSCARG00000000446)	ENSCARG00000000465	trim55a (ENSCARG00000000475)	CYP7B1 (ENSCARG00000000489)	slc39a6 (ENSCARG00000000503) #33	cavin4a (ENSCARG00000000519) #35	tmem71 (ENSCARG00000000524)	apom (ENSCARG00000000529)	ENSCARG00000000532	gtpbp4 (ENSCARG00000000562)	SLCO5A1 (ENSCARG00000000674)	LACTB2 (ENSCARG00000000682)	ENSCARG00000000942	ENSCARG00000001647	ENSCARG00000002419
Cyprininae	ANCESTRAL SPECIES	72	ENSGT00940000162297.c.a	ENSGT00940000154265.mc.k.a.b	ENSGT00940000154265.lc.a.j.a.a	ENSGT00940000154265.mc.k.a.a	ENSGT00940000162297.c.b.b	ENSGT00940000156840.p	ENSGT00940000154265.lc.b.b.a.a.a	ENSGT00940000162297.c.b.a	ENSGT00940000154265.lc.b.b.b	ENSGT00940000154265.lc.a.i.b	ENSGT00940000154265.mc.k.b	ENSGT00940000154265.lc.a.i.a.a	ENSGT00940000154265.mc.l	ENSGT00990000210441	ENSGT00940000177201	ENSGT00390000002854.l #22	ENSGT00940000154265.lc.a.i.a.b	ENSGT00390000015084.c.b	ENSGT00390000002854.k #22	ENSGT00390000003849	ENSGT00940000154473.b.a.b.a	ENSGT00940000154004.a.e.a.h	ENSGT00940000153141.B.b.l	ENSGT00940000156387.ab #33	ENSGT00950000182910.a.b.a.g.b #35	ENSGT00940000154473.b.a.b.b	ENSGT00940000154004.a.e.a.g	ENSGT00940000153141.B.b.k	ENSGT00940000156387.`b #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a.g.a #35
Goldfish	MODERN SPECIES	19	acvr1l (ENSCARG00000015593)	d2hgdh (ENSCARG00000015626)	ZNF622 (ENSCARG00000016106)	zgc:110158 (ENSCARG00000016148)	crlf1a (ENSCARG00000016527)	keap1a (ENSCARG00000016555)	odf3l2a (ENSCARG00000016565)	ebi3 (ENSCARG00000016579)	ENSCARG00000016599	gbp1 (ENSCARG00000016699)	ENSCARG00000017040	gbp1 (ENSCARG00000017071)	gbp1 (ENSCARG00000017159)	ENSCARG00000017222	ENSCARG00000017232	VCPIP1 (ENSCARG00000017241) #22	trim55a (ENSCARG00000017258)	mbd3a (ENSCARG00000017288)	UQCR11 (ENSCARG00000017355)	tcf3a (ENSCARG00000017386)	ENSCARG00000017577	ONECUT3 (ENSCARG00000017584)	ENSCARG00000017590	ENSCARG00000017598	ENSCARG00000017605	sf3a2 (ENSCARG00000017613)	plekhj1 (ENSCARG00000017621)	ISYNA1 (ENSCARG00000017641)	ENSCARG00000003888	ENSCARG00000003904	ENSCARG00000003923
Cyprininae_a	ANCESTRAL SPECIES	149	ENSGT00940000165458.a	ENSGT00940000156569.a.b.a.c	ENSGT00940000160480.c.b.a	ENSGT00940000160050	ENSGT00940000160694.h.a	ENSGT00940000154265.lc.a.j.a.a	ENSGT00940000154265.mc.k.a.a	ENSGT00940000162297.c.b.b	ENSGT00940000156840.p	ENSGT00940000154265.lc.b.b.a.a.a.a.b	ENSGT00940000154265.mc.k.b	ENSGT00940000154265.lc.a.i.a.a	ENSGT00940000154265.mc.l	ENSGT00990000210441	ENSGT00940000177201	ENSGT00390000002854.l #22	ENSGT00390000003849.e	ENSGT00940000154473.b.a.b.b	ENSGT00940000154004.a.e.a.g	ENSGT00940000153141.B.b.k	ENSGT00940000156387.`b #33	ENSGT00940000156056.B.c.a #34	ENSGT00950000182910.a.b.a.h #35	ENSGT00390000006307.x #36	ENSGT00390000011144.b	ENSGT01090000260029.a.b.b.a.b.b.a	ENSGT01100000263491.a.b.a.a.b.b.a.i.a	ENSGT00390000018475.g	ENSGT01080000257410.B.a.b.b.a.b	ENSGT00390000001710.e.a	ENSGT00940000154095.b.a.a.a.d
Common carp reference	MODERN SPECIES	29	acvr1l (ENSCCRG00000011267)	d2hgdh (ENSCCRG00000011782)	ENSCCRG00000011191	zgc:110158 (ENSCCRG00000011178)	keap1a (ENSCCRG00000044328)	crlf1a (ENSCCRG00000071906)	odf3l2a (ENSCCRG00000044318)	ebi3 (ENSCCRG00000044302)	ENSCCRG00000055972	gbp1 (ENSCCRG00000035122)	ENSCCRG00000014852	ENSCCRG00000051785	ENSCCRG00000020619	ENSCCRG00000059073	ENSCCRG00000075496	ENSCCRG00000020617 #22	trim55a (ENSCCRG00000020610)	ENSCCRG00000068266	slc39a6 (ENSCCRG00000020434) #33	ENSCCRG00000046903 #34	cavin4a (ENSCCRG00000041647) #35	ift57 (ENSCCRG00000081079) #36	tmem71 (ENSCCRG00000076900)	ENSCCRG00000041660	ENSCCRG00000072801	gtpbp4 (ENSCCRG00000005766)	ENSCCRG00000011043	ENSCCRG00000011046	ENSCCRG00000011050	ENSCCRG00000014739	ENSCCRG00000007436
Golden-line barbel	MODERN SPECIES	330	otomp (ENSSGRG00000027919)	acvr1l (ENSSGRG00000027927)	d2hgdh (ENSSGRG00000027937)	zgc:110158 (ENSSGRG00000028089)	keap1a (ENSSGRG00000028090)	crlf1a (ENSSGRG00000028091)	odf3l2a (ENSSGRG00000028092)	ebi3 (ENSSGRG00000028093)	ENSSGRG00000028094	ENSSGRG00000028096	ENSSGRG00000028099	gbp1 (ENSSGRG00000028101)	ENSSGRG00000028119	gbp1 (ENSSGRG00000028121)	ENSSGRG00000028127	VCPIP1 (ENSSGRG00000028128) #22	adhfe1 (ENSSGRG00000028130)	ENSSGRG00000028131	trim55a (ENSSGRG00000028133)	CYP7B1 (ENSSGRG00000028135)	slc39a6 (ENSSGRG00000028139) #33	ENSSGRG00000028184 #34	cavin4a (ENSSGRG00000028186) #35	ift57 (ENSSGRG00000028187) #36	tmem71 (ENSSGRG00000028209)	ENSSGRG00000028210	ENSSGRG00000028211	gtpbp4 (ENSSGRG00000028223)	SLCO5A1 (ENSSGRG00000028470)	LACTB2 (ENSSGRG00000028471)	ENSSGRG00000028475
Zebrafish	MODERN SPECIES	11	uggt1 (ENSDARG00000054746)	hs6st1a (ENSDARG00000054754)	otomp (ENSDARG00000040306)	acvr1l (ENSDARG00000014986)	d2hgdh (ENSDARG00000060210)	ZNF622 (ENSDARG00000014692)	SSBP4 (ENSDARG00000056490)	keap1a (ENSDARG00000016132)	crlf1a (ENSDARG00000024365)	odf3l2a (ENSDARG00000014209)	ebi3 (ENSDARG00000053620)	ENSDARG00000012600	ENSDARG00000038669	gbp1 (ENSDARG00000038668)	ENSDARG00000091628	VCPIP1 (ENSDARG00000060177) #22	ENSDARG00000095649	adhfe1 (ENSDARG00000053518)	ENSDARG00000093401	trim55a (ENSDARG00000029596)	CYP7B1 (ENSDARG00000008858)	slc39a6 (ENSDARG00000068143) #33	ENSDARG00000008191 #34	cavin4a (ENSDARG00000038658) #35	ift57 (ENSDARG00000021022) #36	tmem71 (ENSDARG00000079784)	apom (ENSDARG00000076838)	ENSDARG00000079412	ENSDARG00000018506	ENSDARG00000093932	ENSDARG00000095083
Clupeiformes	ANCESTRAL SPECIES	432										ENSGT00990000203757	ENSGT00940000158742	ENSGT00390000002143.a	ENSGT00940000159042	ENSGT00940000159760	ENSGT00940000158506	ENSGT00390000002854 #22	ENSGT00940000156248.d	ENSGT00390000003849	ENSGT00940000154004.a.e.a
Atlantic herring	MODERN SPECIES	4	slc39a6 (ENSCHAG00000003833) #33	polr2j (ENSCHAG00000003781)	ENSCHAG00000003768	ENSCHAG00000003020	ENSCHAG00000002940	ENSCHAG00000002872	tmem71 (ENSCHAG00000002756)	ENSCHAG00000002747	ENSCHAG00000002710	ENSCHAG00000002689 #36	ENSCHAG00000002469	ENSCHAG00000002372	ENSCHAG00000024569	ENSCHAG00000024548	dnaaf11 (ENSCHAG00000024543)	VCPIP1 (ENSCHAG00000024536) #22	ENSCHAG00000024526	ENSCHAG00000024075	ENSCHAG00000024038	ENSCHAG00000024034	ENSCHAG00000024026	ENSCHAG00000024016	ENSCHAG00000024008	ENSCHAG00000024000	ENSCHAG00000023992	PSME4 (ENSCHAG00000022960)	GPR75 (ENSCHAG00000022883)	erlec1 (ENSCHAG00000022749)	ENSCHAG00000022731	ENSCHAG00000022723	ENSCHAG00000022715
Denticle herring	MODERN SPECIES	14	agfg1b (ENSDCDG00000019886)	zgc:110269 (ENSDCDG00000019891)	ENSDCDG00000019897	ENSDCDG00000019906	ENSDCDG00000019908	ENSDCDG00000019909	ENSDCDG00000019911	ENSDCDG00000019914	basp1 (ENSDCDG00000019916)	adcy8 (ENSDCDG00000019929)	efr3a (ENSDCDG00000020255)	ENSDCDG00000023196	KCNQ3 (ENSDCDG00000023207)	ENSDCDG00000023283	cops5 (ENSDCDG00000023288)	VCPIP1 (ENSDCDG00000023366) #22	ENSDCDG00000023368	adhfe1 (ENSDCDG00000023372)	ENSDCDG00000023462	trim55a (ENSDCDG00000023464)	PDE7A (ENSDCDG00000023603)	ENSDCDG00000024633	ENSDCDG00000024635	CYP7B1 (ENSDCDG00000024646)	ENSDCDG00000024669	ENSDCDG00000024673	slc39a6 (ENSDCDG00000024682) #33	ENSDCDG00000024724 #34	cavin4a (ENSDCDG00000024749) #35	ift57 (ENSDCDG00000024769) #36	tmem71 (ENSDCDG00000024897)
Osteoglossiformes	ANCESTRAL SPECIES	29	ENSGT00950000182978.A.a.b.a	ENSGT01090000260093.a	ENSGT00510000046470.a.a.a	ENSGT00950000183021.a.a.a.a	ENSGT00900000143241	ENSGT00940000159454	ENSGT01080000257410.B.a	ENSGT00940000157544	ENSGT00390000005870.a	ENSGT00940000155894	ENSGT00940000159307	ENSGT00940000157108	ENSGT00390000015084.c.a	ENSGT00940000162447.b.b	ENSGT00940000153776.a.a.m	ENSGT00390000002854 #22	ENSGT00940000157709	ENSGT00390000005213	ENSGT00940000154473.a.g	ENSGT00940000154004.a.e.b	ENSGT00940000159294	ENSGT00940000157658	ENSGT00390000014100.l	ENSGT00940000153141.B.b	ENSGT00940000159203	ENSGT01010000223470	ENSGT00940000153886.a.b	ENSGT00940000158863.n	ENSGT00940000159497.a	ENSGT00940000155059	ENSGT00940000154502
Asian bonytongue	MODERN SPECIES	24	ncoa2 (ENSSFOG00015013769)	ENSSFOG00015026636	prdm14 (ENSSFOG00015013923)	SLCO5A1 (ENSSFOG00015013974)	ENSSFOG00015013963	sulf1 (ENSSFOG00015014009)	zgc:162928 (ENSSFOG00015014099)	PREX2 (ENSSFOG00015014140)	CPA6 (ENSSFOG00015014273)	ENSSFOG00015014288	ARFGEF1 (ENSSFOG00015014317)	ENSSFOG00015014374	cops5 (ENSSFOG00015014397)	TCF24 (ENSSFOG00015027807)	sgk3 (ENSSFOG00015014435)	VCPIP1 (ENSSFOG00015014462) #22	MYBL1 (ENSSFOG00015014486)	ENSSFOG00015014515	rrs1 (ENSSFOG00015032123)	crhb (ENSSFOG00015028112)	trim55b (ENSSFOG00015027012)	DNAJC5B (ENSSFOG00015015659)	pde7a (ENSSFOG00015027409)	mtfr1 (ENSSFOG00015028733)	armc1 (ENSSFOG00015030119)	bhlhe22 (ENSSFOG00015015519)	ythdf3 (ENSSFOG00015015445)	ggh (ENSSFOG00015015417)	NKAIN3 (ENSSFOG00015031371)	ASPH (ENSSFOG00015015190)	CLVS1 (ENSSFOG00015025947)
P. kingsleyae	MODERN SPECIES	5	eya1 (ENSPKIG00000006907)	xkr9 (ENSPKIG00000007080)	tram1 (ENSPKIG00000007102)	ncoa2 (ENSPKIG00000007123)	ENSPKIG00000007157	prdm14 (ENSPKIG00000007176)	SLCO5A1 (ENSPKIG00000007199)	sulf1 (ENSPKIG00000007233)	zgc:162928 (ENSPKIG00000007285)	PREX2 (ENSPKIG00000007362)	CPA6 (ENSPKIG00000007430)	ARFGEF1 (ENSPKIG00000007502)	CSPP1 (ENSPKIG00000007653)	TCF24 (ENSPKIG00000007760)	sgk3 (ENSPKIG00000007794)	VCPIP1 (ENSPKIG00000007869) #22	MYBL1 (ENSPKIG00000007912)	rrs1 (ENSPKIG00000007953)	CRH (ENSPKIG00000007968)	DNAJC5B (ENSPKIG00000007998)	pde7a (ENSPKIG00000008071)	mtfr1 (ENSPKIG00000008201)	armc1 (ENSPKIG00000008223)	bhlhe22 (ENSPKIG00000008248)	ENSPKIG00000008265	ythdf3 (ENSPKIG00000008298)	ggh (ENSPKIG00000008345)	NKAIN3 (ENSPKIG00000008379)	ENSPKIG00000008401	exoc1 (ENSPKIG00000008457)	ENSPKIG00000008597
Spotted gar	MODERN SPECIES	675	ncoa2 (ENSLOCG00000004079)	prdm14 (ENSLOCG00000004139)	SLCO5A1 (ENSLOCG00000004156)	sulf1 (ENSLOCG00000004178)	zgc:162928 (ENSLOCG00000004246)	PREX2 (ENSLOCG00000004272)	ENSLOCG00000004365	CPA6 (ENSLOCG00000004376)	ARFGEF1 (ENSLOCG00000004389)	CSPP1 (ENSLOCG00000004516)	cops5 (ENSLOCG00000004575)	ppp1r42 (ENSLOCG00000004595)	TCF24 (ENSLOCG00000004611)	MCMDC2 (ENSLOCG00000004629)	sgk3 (ENSLOCG00000004656)	VCPIP1 (ENSLOCG00000004697) #22	MYBL1 (ENSLOCG00000004709)	adhfe1 (ENSLOCG00000004744)	rrs1 (ENSLOCG00000017812)	trim55b (ENSLOCG00000004781)	crhb (ENSLOCG00000017813)	pde7a (ENSLOCG00000004815)	mtfr1 (ENSLOCG00000004859)	armc1 (ENSLOCG00000004869)	CYP7B1 (ENSLOCG00000004895)	bhlhe22 (ENSLOCG00000017814)	ythdf3 (ENSLOCG00000004932)	ttpa (ENSLOCG00000004948)	ggh (ENSLOCG00000004962)	NKAIN3 (ENSLOCG00000004986)	ENSLOCG00000005010