Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT00390000014879.c.b #10	ENSGT00950000182869.e.b.a #11	ENSGT00940000161614	ENSGT00940000156918 #12	ENSGT00900000143342	ENSGT00950000182937.A.b #13	ENSGT00940000158930.d #14	ENSGT00940000157991 #15	ENSGT00940000156962 #16	ENSGT00940000155760 #17	ENSGT00940000168975	ENSGT00940000160545 #18	ENSGT01030000234574.B.c.b.b #19	ENSGT00390000003246 #20	ENSGT00390000000134.b #21	ENSGT00940000159875 #22	ENSGT00940000156888 #23	ENSGT00390000003458 #24	ENSGT00940000161813 #25	ENSGT00940000161410 #26	ENSGT00940000162281 #27	ENSGT00940000161015.e #28	ENSGT00940000161015.f #29	ENSGT00940000162784 #30	ENSGT00940000162466 #31	ENSGT00940000156239	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00940000158064	ENSGT00940000156991	ENSGT00940000155860
Hystricomorpha_b	ANCESTRAL SPECIES	104	ENSGT00390000014879.c.b #10	ENSGT00950000182869.e.b.a #11	ENSGT00940000161614	ENSGT00940000156918 #12	ENSGT00900000143342	ENSGT00950000182937.A.b #13	ENSGT00940000158930.d #14	ENSGT00940000157991 #15	ENSGT00940000156962 #16	ENSGT00940000155760 #17	ENSGT00940000168975	ENSGT00940000160545 #18	ENSGT01030000234574.B.c.b.b #19	ENSGT00390000003246 #20	ENSGT00390000000134.b #21	ENSGT00940000159875 #22	ENSGT00940000156888 #23	ENSGT00390000003458 #24	ENSGT00940000161813 #25	ENSGT00940000161410 #26	ENSGT00940000162281 #27	ENSGT00940000161015.e #28	ENSGT00940000161015.f #29	ENSGT00940000162784 #30	ENSGT00940000162466 #31
Long-tailed chinchilla	MODERN SPECIES	243	CHRNA6 (ENSCLAG00000000775) #7	CHRNB3 (ENSCLAG00000001883) #8	SMIM19 (ENSCLAG00000002469) #9	SLC20A2 (ENSCLAG00000000798) #10	VDAC3 (ENSCLAG00000000866) #11	POLB (ENSCLAG00000000919) #12	IKBKB (ENSCLAG00000001149) #13	PLAT (ENSCLAG00000000644) #14	AP3M2 (ENSCLAG00000000733) #15	KAT6A (ENSCLAG00000001559) #16	ANK1 (ENSCLAG00000001439) #17	NKX6-3 (ENSCLAG00000002327) #18	GPAT4 (ENSCLAG00000002589) #19	GINS4 (ENSCLAG00000000658) #20	GOLGA7 (ENSCLAG00000000695) #21	SFRP1 (ENSCLAG00000000712) #22	ZMAT4 (ENSCLAG00000000923) #23	TCIM (ENSCLAG00000017544) #24	IDO2 (ENSCLAG00000003005) #25	IDO1 (ENSCLAG00000001109) #26	ADAM18 (ENSCLAG00000001412) #27	ENSCLAG00000001018 #28	ENSCLAG00000001252 #29	ENSCLAG00000001686 #30	ENSCLAG00000003702 #31
Degu	MODERN SPECIES	92	ENSODEG00000006104	ENSODEG00000004860 #13	ENSODEG00000019108	PLAT (ENSODEG00000005190) #14	AP3M2 (ENSODEG00000005127) #15	ENSODEG00000005192 #16	KAT6A (ENSODEG00000005122) #16	ANK1 (ENSODEG00000006246) #17	ENSODEG00000005411	NKX6-3 (ENSODEG00000005528) #18	GPAT4 (ENSODEG00000006252) #19	GINS4 (ENSODEG00000006226) #20	ENSODEG00000007450 #21	ENSODEG00000007500	ENSODEG00000007818	SFRP1 (ENSODEG00000005553) #22	ENSODEG00000019306	ZMAT4 (ENSODEG00000006439) #23	TCIM (ENSODEG00000019243) #24	ENSODEG00000006006	IDO1 (ENSODEG00000006588) #26	ENSODEG00000006039	RUBCNL (ENSODEG00000006136)	LRCH1 (ENSODEG00000005209)	ENSODEG00000005173	HTR2A (ENSODEG00000005410)	ENSODEG00000005886	ENSODEG00000019388	ENSODEG00000005873	ENSODEG00000006404	NUDT15 (ENSODEG00000006598)
Guinea pig	MODERN SPECIES	80	SMIM19 (ENSCPOG00000032325) #9	SLC20A2 (ENSCPOG00000008610) #10	VDAC3 (ENSCPOG00000010512) #11	DKK4 (ENSCPOG00000021700)	POLB (ENSCPOG00000010567) #12	ENSCPOG00000039839	IKBKB (ENSCPOG00000010558) #13	PLAT (ENSCPOG00000026062) #14	AP3M2 (ENSCPOG00000002362) #15	KAT6A (ENSCPOG00000011695) #16	ANK1 (ENSCPOG00000007390) #17	NKX6-3 (ENSCPOG00000027500) #18	GPAT4 (ENSCPOG00000008006) #19	GINS4 (ENSCPOG00000009211) #20	GOLGA7 (ENSCPOG00000037269) #21	SFRP1 (ENSCPOG00000039437) #22	ZMAT4 (ENSCPOG00000015224) #23	TCIM (ENSCPOG00000013411) #24	IDO2 (ENSCPOG00000033051) #25	IDO1 (ENSCPOG00000014771) #26	ENSCPOG00000015304 #27	ENSCPOG00000008853	ENSCPOG00000030322	ENSCPOG00000012967	ENSCPOG00000007329	CXCL17 (ENSCPOG00000039366)	LIPE (ENSCPOG00000020887)	CNFN (ENSCPOG00000034761)	MEGF8 (ENSCPOG00000012979)	TMEM145 (ENSCPOG00000012974)	PRR19 (ENSCPOG00000024016)