Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000159692	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00530000063539.a	ENSGT00940000161204	ENSGT00940000157024 #14	ENSGT00940000159193 #15	ENSGT00390000006349	ENSGT00530000064100 #16	ENSGT00840000129948 #17	ENSGT00940000158314 #18	ENSGT00940000158422.a #19	ENSGT00940000160742 #20	ENSGT00940000154098.a.c #21	ENSGT01070000256312	ENSGT00940000159482 #22	ENSGT00530000063320.A #23	ENSGT00940000158900 #24	ENSGT00950000182914.b #26	ENSGT00940000153414.B #27	ENSGT00940000159363 #28	ENSGT00950000183042.a.a #29	ENSGT00940000156659 #30	ENSGT01100000263544.c.a.b.b #31	ENSGT00940000161943 #32	ENSGT00940000161300 #33	ENSGT00390000004770	ENSGT01050000244882.a.a.a.b #34	ENSGT00390000005106 #35	ENSGT00950000182824.a.a.b.b #36	ENSGT00950000182937.B.a #37
Hystricomorpha	ANCESTRAL SPECIES	29	ENSGT00390000014507.b	ENSGT00940000159692	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00530000063539.a	ENSGT00940000161204	ENSGT00940000157024 #14	ENSGT00940000159193 #15	ENSGT00390000006349	ENSGT00530000064100 #16	ENSGT00840000129948 #17	ENSGT00940000158314 #18	ENSGT00940000158422.a #19	ENSGT00940000160742 #20	ENSGT00940000154098.a.c #21	ENSGT00940000159482 #22	ENSGT00530000063320.A #23	ENSGT00940000158900 #24	ENSGT00950000182914.b #26	ENSGT00940000153414.B #27	ENSGT00940000159363 #28	ENSGT00950000183042.a.a #29	ENSGT00940000156659 #30	ENSGT01100000263544.c.a.b.b #31	ENSGT00940000161943 #32	ENSGT00940000161300 #33	ENSGT00390000004770	ENSGT01050000244882.a.a.a.b #34	ENSGT00390000005106 #35	ENSGT00950000182824.a.a.b.b #36	ENSGT00950000182937.B.a #37
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00390000014507.b	ENSGT00940000159692	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00530000063539.a	ENSGT00940000161204	ENSGT00940000157024 #14	ENSGT00940000159193 #15	ENSGT00390000006349	ENSGT00530000064100 #16	ENSGT00840000129948 #17	ENSGT00940000158314 #18	ENSGT00940000158422.a #19	ENSGT00940000160742 #20	ENSGT00940000154098.a.c #21	ENSGT00940000159482 #22	ENSGT00530000063320.A #23	ENSGT00940000158900 #24	ENSGT00950000182914.b #26	ENSGT00940000153414.B #27	ENSGT00940000159363 #28	ENSGT00950000183042.a.a #29	ENSGT00940000156659 #30	ENSGT01100000263544.c.a.b.b #31	ENSGT00940000161943 #32	ENSGT00940000161300 #33	ENSGT00390000004770	ENSGT01050000244882.a.a.a.b #34	ENSGT00390000005106 #35	ENSGT00950000182824.a.a.b.b #36	ENSGT00950000182937.B.a #37
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00390000008827	ENSGT00390000014507.b	ENSGT00940000159692	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00530000063539.a	ENSGT00940000157024 #14	ENSGT00940000159193 #15	ENSGT00390000006349	ENSGT00530000064100 #16	ENSGT00840000129948 #17	ENSGT00940000158314 #18	ENSGT00940000158422.a #19	ENSGT00940000160742 #20	ENSGT00940000154098.a.c #21	ENSGT00940000159482 #22	ENSGT00530000063320.A #23	ENSGT00940000158900 #24	ENSGT00950000182914.b #26	ENSGT00940000153414.B #27	ENSGT00940000159363 #28	ENSGT00950000183042.a.a #29	ENSGT00940000156659 #30	ENSGT01100000263544.c.a.b.b #31	ENSGT00940000161943 #32	ENSGT00940000161300 #33	ENSGT00390000004770	ENSGT01050000244882.a.a.a.b #34	ENSGT00390000005106 #35	ENSGT00950000182824.a.a.b.b #36	ENSGT00950000182937.B.a #37
Degu	MODERN SPECIES	172						ENSODEG00000019135 #12	ENSODEG00000005507 #13	NFASC (ENSODEG00000006271) #14	CNTN2 (ENSODEG00000005095) #15	RBBP5 (ENSODEG00000005136) #16	DSTYK (ENSODEG00000007490) #17	TMCC2 (ENSODEG00000005555) #18	NUAK2 (ENSODEG00000006060) #19	KLHDC8A (ENSODEG00000006709) #20	ENSODEG00000005112 #21	CDK18 (ENSODEG00000005608) #22	MFSD4A (ENSODEG00000005247) #23	ELK4 (ENSODEG00000006084) #24	ENSODEG00000019457 #25	SLC45A3 (ENSODEG00000007692) #26	ENSODEG00000005090 #27	RAB29 (ENSODEG00000006357) #28	SLC41A1 (ENSODEG00000006495) #29	PM20D1 (ENSODEG00000005792) #30	SLC26A9 (ENSODEG00000005539) #31	RAB7B (ENSODEG00000005589) #32	CTSE (ENSODEG00000005548) #33	AVPR1B (ENSODEG00000006394) #34	ENSODEG00000005913 #35	ENSODEG00000007417 #36	IKBKE (ENSODEG00000005963) #37
Long-tailed chinchilla	MODERN SPECIES	113	KISS1 (ENSCLAG00000017136)	GOLT1A (ENSCLAG00000015523)	PLEKHA6 (ENSCLAG00000011288)	PPP1R15B (ENSCLAG00000012864)	PIK3C2B (ENSCLAG00000013032)	MDM4 (ENSCLAG00000011995)	NFASC (ENSCLAG00000012040) #14	CNTN2 (ENSCLAG00000011919) #15	TMEM81 (ENSCLAG00000013114)	RBBP5 (ENSCLAG00000014383) #16	DSTYK (ENSCLAG00000014831) #17	TMCC2 (ENSCLAG00000016468) #18	NUAK2 (ENSCLAG00000012570) #19	KLHDC8A (ENSCLAG00000015610) #20	LEMD1 (ENSCLAG00000015190) #21	CDK18 (ENSCLAG00000010383) #22	MFSD4A (ENSCLAG00000013803) #23	ELK4 (ENSCLAG00000012506) #24	SLC45A3 (ENSCLAG00000014118) #26	NUCKS1 (ENSCLAG00000017127) #27	RAB29 (ENSCLAG00000010484) #28	SLC41A1 (ENSCLAG00000010933) #29	PM20D1 (ENSCLAG00000012926) #30	SLC26A9 (ENSCLAG00000012220) #31	RAB7B (ENSCLAG00000012958) #32	CTSE (ENSCLAG00000012938) #33	RHEX (ENSCLAG00000013012)	AVPR1B (ENSCLAG00000013862) #34	ENSCLAG00000014908 #35	ENSCLAG00000012031 #36	IKBKE (ENSCLAG00000013208) #37
Guinea pig	MODERN SPECIES	12	KISS1 (ENSCPOG00000032840)	GOLT1A (ENSCPOG00000004206)	PLEKHA6 (ENSCPOG00000011824)	PPP1R15B (ENSCPOG00000005954)	PIK3C2B (ENSCPOG00000005959)	MDM4 (ENSCPOG00000008227)	LRRN2 (ENSCPOG00000026151)	NFASC (ENSCPOG00000011736) #14	CNTN2 (ENSCPOG00000011751) #15	ENSCPOG00000011763 #16	DSTYK (ENSCPOG00000011764) #17	TMCC2 (ENSCPOG00000011772) #18	NUAK2 (ENSCPOG00000011773) #19	KLHDC8A (ENSCPOG00000020319) #20	ENSCPOG00000005220 #21	CDK18 (ENSCPOG00000005224) #22	MFSD4A (ENSCPOG00000014691) #23	ELK4 (ENSCPOG00000010980) #24	SLC45A3 (ENSCPOG00000022526) #26	NUCKS1 (ENSCPOG00000003127) #27	RAB29 (ENSCPOG00000008498) #28	SLC41A1 (ENSCPOG00000007233) #29	PM20D1 (ENSCPOG00000007241) #30	SLC26A9 (ENSCPOG00000009513) #31	RAB7B (ENSCPOG00000024342) #32	CTSE (ENSCPOG00000009523) #33	RHEX (ENSCPOG00000038577)	AVPR1B (ENSCPOG00000036821) #34	ENSCPOG00000006809 #35	ENSCPOG00000008917 #36	IKBKE (ENSCPOG00000008923) #37
Naked mole-rat female	MODERN SPECIES	16	GOLT1A (ENSHGLG00000005741)	PLEKHA6 (ENSHGLG00000003457)	PPP1R15B (ENSHGLG00000010479)	PIK3C2B (ENSHGLG00000008940)	MDM4 (ENSHGLG00000040409)	LRRN2 (ENSHGLG00000047392)	NFASC (ENSHGLG00000008978) #14	CNTN2 (ENSHGLG00000019314) #15	TMEM81 (ENSHGLG00000009323)	RBBP5 (ENSHGLG00000008643) #16	DSTYK (ENSHGLG00000006608) #17	TMCC2 (ENSHGLG00000007340) #18	NUAK2 (ENSHGLG00000018780) #19	KLHDC8A (ENSHGLG00000042583) #20	ENSHGLG00000030280	CDK18 (ENSHGLG00000015315) #22	MFSD4A (ENSHGLG00000009280) #23	ELK4 (ENSHGLG00000006206) #24	SLC45A3 (ENSHGLG00000005465) #26	ENSHGLG00000049818	ENSHGLG00000015004 #27	RAB29 (ENSHGLG00000039555) #28	SLC41A1 (ENSHGLG00000014413) #29	PM20D1 (ENSHGLG00000019232) #30	SLC26A9 (ENSHGLG00000013130) #31	RAB7B (ENSHGLG00000005045) #32	ENSHGLG00000007519	CTSE (ENSHGLG00000003917) #33	RHEX (ENSHGLG00000039072)	AVPR1B (ENSHGLG00000003446) #34	ENSHGLG00000008162 #35
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000159692	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00530000063539.a	ENSGT00940000161204	ENSGT00940000157024 #14	ENSGT00940000159193 #15	ENSGT00390000006349	ENSGT00530000064100 #16	ENSGT00840000129948 #17	ENSGT00940000158314 #18	ENSGT00940000158422.a #19	ENSGT00940000160742 #20	ENSGT00940000154098.a.c #21	ENSGT01070000256312	ENSGT00940000159482 #22	ENSGT00530000063320.A #23	ENSGT00940000158900 #24	ENSGT00950000182914.b #26	ENSGT00940000153414.B #27	ENSGT00940000159363 #28	ENSGT00950000183042.a.a #29	ENSGT00940000156659 #30	ENSGT01100000263544.c.a.b.b #31	ENSGT00940000161943 #32	ENSGT00940000161300 #33	ENSGT00390000004770	ENSGT01050000244882.a.a.a.b #34	ENSGT00390000005106 #35	ENSGT00950000182824.a.a.b.b #36	ENSGT00950000182937.B.a #37
Marmotini	ANCESTRAL SPECIES	21							ENSGT00940000157024 #14	ENSGT00940000159193 #15	ENSGT00390000006349	ENSGT00530000064100 #16	ENSGT00840000129948 #17	ENSGT00940000158314 #18	ENSGT00940000158422.a #19	ENSGT00940000160742 #20	ENSGT00940000154098.a.c #21	ENSGT00940000159482 #22	ENSGT00530000063320.A #23	ENSGT00940000158900 #24	ENSGT00950000182914.b #26	ENSGT00940000153414.B #27	ENSGT00940000159363 #28	ENSGT00950000183042.a.a #29	ENSGT00940000156659 #30	ENSGT01100000263544.c.a.b.b #31	ENSGT00940000161943 #32	ENSGT00940000161300 #33	ENSGT00390000004770	ENSGT01050000244882.a.a.a.b #34	ENSGT00390000005106 #35	ENSGT00950000182824.a.a.b.b #36	ENSGT00950000182937.B.a #37
Marmotini_b	ANCESTRAL SPECIES	63							ENSGT00940000157024 #14	ENSGT00940000159193 #15	ENSGT00390000006349	ENSGT00530000064100 #16	ENSGT00840000129948 #17	ENSGT00940000158314 #18	ENSGT00940000158422.a #19	ENSGT00940000160742 #20	ENSGT00940000154098.a.c #21	ENSGT00940000159482 #22	ENSGT00530000063320.A #23	ENSGT00940000158900 #24	ENSGT00950000182914.b #26	ENSGT00940000153414.B #27	ENSGT00940000159363 #28	ENSGT00950000183042.a.a #29	ENSGT00940000156659 #30	ENSGT01100000263544.c.a.b.b #31	ENSGT00940000161943 #32	ENSGT00940000161300 #33	ENSGT00390000004770	ENSGT01050000244882.a.a.a.b #34	ENSGT00390000005106 #35	ENSGT00950000182824.a.a.b.b #36	ENSGT00950000182937.B.a #37
Arctic ground squirrel	MODERN SPECIES	49							NFASC (ENSUPAG00010013868) #14	CNTN2 (ENSUPAG00010014130) #15	TMEM81 (ENSUPAG00010014151)	RBBP5 (ENSUPAG00010014156) #16	DSTYK (ENSUPAG00010014219) #17	TMCC2 (ENSUPAG00010014257) #18	NUAK2 (ENSUPAG00010014287) #19	KLHDC8A (ENSUPAG00010014297) #20	LEMD1 (ENSUPAG00010014304) #21	CDK18 (ENSUPAG00010014325) #22	MFSD4A (ENSUPAG00010014359) #23	ELK4 (ENSUPAG00010014446) #24	SLC45A3 (ENSUPAG00010014458) #26	NUCKS1 (ENSUPAG00010014469) #27	RAB29 (ENSUPAG00010014481) #28	SLC41A1 (ENSUPAG00010014492) #29	PM20D1 (ENSUPAG00010014516) #30	SLC26A9 (ENSUPAG00010014561) #31	RAB7B (ENSUPAG00010014589) #32	CTSE (ENSUPAG00010014670) #33	ENSUPAG00010014715	AVPR1B (ENSUPAG00010014724) #34	ENSUPAG00010014738 #35	ENSUPAG00010014755 #36	IKBKE (ENSUPAG00010014821) #37
Squirrel	MODERN SPECIES	157								NFASC (ENSSTOG00000002615) #14	CNTN2 (ENSSTOG00000004555) #15	RBBP5 (ENSSTOG00000002654) #16	DSTYK (ENSSTOG00000002673) #17	TMCC2 (ENSSTOG00000002699) #18	NUAK2 (ENSSTOG00000026121) #19	KLHDC8A (ENSSTOG00000011283) #20	ENSSTOG00000034719 #21	CDK18 (ENSSTOG00000028817) #22	MFSD4A (ENSSTOG00000014788) #23	ELK4 (ENSSTOG00000014796) #24	SLC45A3 (ENSSTOG00000007068) #26	NUCKS1 (ENSSTOG00000009264) #27	RAB29 (ENSSTOG00000009275) #28	SLC41A1 (ENSSTOG00000009287) #29	PM20D1 (ENSSTOG00000009299) #30	SLC26A9 (ENSSTOG00000007661) #31	RAB7B (ENSSTOG00000020708) #32	CTSE (ENSSTOG00000009579) #33	AVPR1B (ENSSTOG00000027172) #34	ENSSTOG00000027769 #35	ENSSTOG00000006198 #36	ENSSTOG00000021544 #37	RASSF5 (ENSSTOG00000006317)
Alpin marmot	MODERN SPECIES	12	ZBTB41 (ENSMMMG00000004938)	ENSMMMG00000004895	F13B (ENSMMMG00000004870)	ENSMMMG00000004823	ENSMMMG00000004816	ENSMMMG00000004813	NFASC (ENSMMMG00000004534) #14	CNTN2 (ENSMMMG00000004499) #15	TMEM81 (ENSMMMG00000004488)	RBBP5 (ENSMMMG00000004421) #16	DSTYK (ENSMMMG00000004344) #17	TMCC2 (ENSMMMG00000004302) #18	NUAK2 (ENSMMMG00000004276) #19	KLHDC8A (ENSMMMG00000004257) #20	LEMD1 (ENSMMMG00000004248) #21	CDK18 (ENSMMMG00000004179) #22	MFSD4A (ENSMMMG00000004071) #23	ELK4 (ENSMMMG00000004051) #24	SLC45A3 (ENSMMMG00000004036) #26	NUCKS1 (ENSMMMG00000004012) #27	RAB29 (ENSMMMG00000004000) #28	SLC41A1 (ENSMMMG00000003973) #29	PM20D1 (ENSMMMG00000003926) #30	SLC26A9 (ENSMMMG00000003875) #31	RAB7B (ENSMMMG00000003773) #32	CTSE (ENSMMMG00000003747) #33	RHEX (ENSMMMG00000003734)	AVPR1B (ENSMMMG00000003719) #34	ENSMMMG00000003704 #35	ENSMMMG00000003630 #36	IKBKE (ENSMMMG00000003569) #37
Eurasian red squirrel	MODERN SPECIES	3	PPP1R15B (ENSSVLG00005007196)	PIK3C2B (ENSSVLG00005007149)	MDM4 (ENSSVLG00005006908)	LRRN2 (ENSSVLG00005006839)	NFASC (ENSSVLG00005006491) #14	CNTN2 (ENSSVLG00005006288) #15	TMEM81 (ENSSVLG00005006251)	RBBP5 (ENSSVLG00005006207) #16	ENSSVLG00005006171	DSTYK (ENSSVLG00005006109) #17	TMCC2 (ENSSVLG00005005955) #18	NUAK2 (ENSSVLG00005005904) #19	KLHDC8A (ENSSVLG00005005877) #20	LEMD1 (ENSSVLG00005005835) #21	ENSSVLG00005005816	CDK18 (ENSSVLG00005005665) #22	MFSD4A (ENSSVLG00005005415) #23	ELK4 (ENSSVLG00005005363) #24	SLC45A3 (ENSSVLG00005024932) #26	NUCKS1 (ENSSVLG00005024900) #27	RAB29 (ENSSVLG00005024859) #28	SLC41A1 (ENSSVLG00005024830) #29	PM20D1 (ENSSVLG00005024768) #30	SLC26A9 (ENSSVLG00005024704) #31	RAB7B (ENSSVLG00005024662) #32	CTSE (ENSSVLG00005024594) #33	RHEX (ENSSVLG00005024556)	AVPR1B (ENSSVLG00005024532) #34	ENSSVLG00005024519	ENSSVLG00005024444 #35	ENSSVLG00005024367 #36