Amniota	ANCESTRAL SPECIES	28	ENSGT00940000157485	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000005125 #20	ENSGT00940000158341 #19
Mammalia	ANCESTRAL SPECIES	25	ENSGT00940000154947 #7	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34
Theria	ANCESTRAL SPECIES	3	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Eutheria	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Glires	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Rodentia	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132.e #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Eurasian red squirrel	MODERN SPECIES		CLK2 (ENSSVLG00005019777) #7	HCN3 (ENSSVLG00005000099) #8	PKLR (ENSSVLG00005000101) #9	FDPS (ENSSVLG00005000103) #10	RUSC1 (ENSSVLG00005000107) #11	ENSSVLG00005000118 #12	MSTO1 (ENSSVLG00005000136) #13	ENSSVLG00005000147 #14	ENSSVLG00005000171 #15	ENSSVLG00005000188 #16	KHDC4 (ENSSVLG00005000224) #17	RXFP4 (ENSSVLG00005000258) #18	ARHGEF2 (ENSSVLG00005000357) #19	SSR2 (ENSSVLG00005000552) #20	UBQLN4 (ENSSVLG00005000591) #21	LAMTOR2 (ENSSVLG00005000628) #22	RAB25 (ENSSVLG00005000653) #23	MEX3A (ENSSVLG00005000673) #24	LMNA (ENSSVLG00005000714) #25	SEMA4A (ENSSVLG00005000802) #26	SLC25A44 (ENSSVLG00005000872) #27	PMF1 (ENSSVLG00005000891) #28	BGLAP (ENSSVLG00005000913) #29	PAQR6 (ENSSVLG00005000936) #30	SMG5 (ENSSVLG00005000972) #31	ENSSVLG00005000998 #32	GLMP (ENSSVLG00005001024) #33	CCT3 (ENSSVLG00005001076) #34	TSACC (ENSSVLG00005001124) #35	RHBG (ENSSVLG00005001146) #36	MEF2D (ENSSVLG00005001227) #37
Marmotini	ANCESTRAL SPECIES	33	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132.e #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Alpin marmot	MODERN SPECIES	85	HCN3 (ENSMMMG00000014457) #8	PKLR (ENSMMMG00000014412) #9	FDPS (ENSMMMG00000014395) #10	ENSMMMG00000014387 #11	ASH1L (ENSMMMG00000014324) #12	DAP3 (ENSMMMG00000014245)	MSTO1 (ENSMMMG00000014213) #13	ENSMMMG00000014163 #14	SYT11 (ENSMMMG00000014151) #15	ENSMMMG00000014145 #16	KHDC4 (ENSMMMG00000014104) #17	RXFP4 (ENSMMMG00000014101) #18	ARHGEF2 (ENSMMMG00000013899) #19	SSR2 (ENSMMMG00000013889) #20	UBQLN4 (ENSMMMG00000013874) #21	LAMTOR2 (ENSMMMG00000013864) #22	RAB25 (ENSMMMG00000013857) #23	MEX3A (ENSMMMG00000013855) #24	LMNA (ENSMMMG00000013831) #25	SEMA4A (ENSMMMG00000013785) #26	SLC25A44 (ENSMMMG00000013773) #27	ENSMMMG00000013758	BGLAP (ENSMMMG00000013734) #29	PAQR6 (ENSMMMG00000013724) #30	SMG5 (ENSMMMG00000013706) #31	TMEM79 (ENSMMMG00000013693)	GLMP (ENSMMMG00000013644) #33	CCT3 (ENSMMMG00000013571) #34	TSACC (ENSMMMG00000013564) #35	RHBG (ENSMMMG00000013553) #36	ENSMMMG00000013541 #37
Marmotini_b	ANCESTRAL SPECIES	37	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132.e #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Squirrel	MODERN SPECIES	180	HCN3 (ENSSTOG00000008989) #8	PKLR (ENSSTOG00000022480) #9	ENSSTOG00000004475 #10	RUSC1 (ENSSTOG00000004516) #11	ASH1L (ENSSTOG00000019952) #12	DAP3 (ENSSTOG00000004627)	MSTO1 (ENSSTOG00000004655) #13	ENSSTOG00000004664 #14	SYT11 (ENSSTOG00000004720) #15	RIT1 (ENSSTOG00000021028) #16	KHDC4 (ENSSTOG00000004732) #17	RXFP4 (ENSSTOG00000000616) #18	ARHGEF2 (ENSSTOG00000000620) #19	SSR2 (ENSSTOG00000028971) #20	UBQLN4 (ENSSTOG00000020043) #21	LAMTOR2 (ENSSTOG00000023389) #22	RAB25 (ENSSTOG00000000634) #23	MEX3A (ENSSTOG00000024275) #24	LMNA (ENSSTOG00000001758) #25	SEMA4A (ENSSTOG00000028050) #26	SLC25A44 (ENSSTOG00000001764) #27	PMF1 (ENSSTOG00000001768) #28	ENSSTOG00000034466	BGLAP (ENSSTOG00000027908) #29	PAQR6 (ENSSTOG00000001772) #30	SMG5 (ENSSTOG00000001780) #31	TMEM79 (ENSSTOG00000026140)	GLMP (ENSSTOG00000015763) #33	CCT3 (ENSSTOG00000001798) #34	TSACC (ENSSTOG00000001810) #35	RHBG (ENSSTOG00000028396) #36
Arctic ground squirrel	MODERN SPECIES	309	HCN3 (ENSUPAG00010002732) #8	PKLR (ENSUPAG00010002743) #9	FDPS (ENSUPAG00010002775) #10	RUSC1 (ENSUPAG00010002787) #11	ASH1L (ENSUPAG00010002818) #12	ENSUPAG00010002886	MSTO1 (ENSUPAG00010002943) #13	ENSUPAG00010002975 #14	SYT11 (ENSUPAG00010003045) #15	ENSUPAG00010003055 #16	KHDC4 (ENSUPAG00010003067) #17	ENSUPAG00010003101	ARHGEF2 (ENSUPAG00010003114) #19	SSR2 (ENSUPAG00010003598) #20	UBQLN4 (ENSUPAG00010003613) #21	LAMTOR2 (ENSUPAG00010003634) #22	RAB25 (ENSUPAG00010003640) #23	MEX3A (ENSUPAG00010003653) #24	LMNA (ENSUPAG00010003669) #25	SEMA4A (ENSUPAG00010003712) #26	SLC25A44 (ENSUPAG00010004013) #27	PMF1 (ENSUPAG00010004034) #28	BGLAP (ENSUPAG00010004045) #29	ENSUPAG00010004061 #30	SMG5 (ENSUPAG00010004091) #31	TMEM79 (ENSUPAG00010004129)	GLMP (ENSUPAG00010004142) #33	CCT3 (ENSUPAG00010004189) #34	TSACC (ENSUPAG00010004234) #35	RHBG (ENSUPAG00010004243) #36	MEF2D (ENSUPAG00010004263) #37
Hystricomorpha	ANCESTRAL SPECIES	45	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224.z.a #34	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	54	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224.y #34	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b
Guinea pig	MODERN SPECIES	10	HCN3 (ENSCPOG00000027026) #8	PKLR (ENSCPOG00000011202) #9	FDPS (ENSCPOG00000015363) #10	RUSC1 (ENSCPOG00000032934) #11	ASH1L (ENSCPOG00000004801) #12	DAP3 (ENSCPOG00000030924)	MSTO1 (ENSCPOG00000004857) #13	ENSCPOG00000004859 #14	SYT11 (ENSCPOG00000004866) #15	RIT1 (ENSCPOG00000004868) #16	KHDC4 (ENSCPOG00000004870) #17	ENSCPOG00000032356	ARHGEF2 (ENSCPOG00000025396) #19	SSR2 (ENSCPOG00000023729) #20	UBQLN4 (ENSCPOG00000002467) #21	LAMTOR2 (ENSCPOG00000032238) #22	RAB25 (ENSCPOG00000002472) #23	MEX3A (ENSCPOG00000020219) #24	LMNA (ENSCPOG00000023214) #25	SEMA4A (ENSCPOG00000015694) #26	SLC25A44 (ENSCPOG00000021129) #27	PMF1 (ENSCPOG00000015695) #28	BGLAP (ENSCPOG00000040505) #29	PAQR6 (ENSCPOG00000019726) #30	SMG5 (ENSCPOG00000015696) #31	TMEM79 (ENSCPOG00000033881)	GLMP (ENSCPOG00000032634) #33	CCT3 (ENSCPOG00000009131) #34	RHBG (ENSCPOG00000011135) #36	MEF2D (ENSCPOG00000036656) #37	IQGAP3 (ENSCPOG00000005361)
Hystricomorpha_b	ANCESTRAL SPECIES	61	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224.z.a #34	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b
Degu	MODERN SPECIES	73	PKLR (ENSODEG00000011272) #9	FDPS (ENSODEG00000010515) #10	ENSODEG00000010812 #11	ASH1L (ENSODEG00000009920) #12	DAP3 (ENSODEG00000010674)	MSTO1 (ENSODEG00000011191) #13	ENSODEG00000010737	ENSODEG00000011008 #14	SYT11 (ENSODEG00000010870) #15	RIT1 (ENSODEG00000010128) #16	ENSODEG00000009528 #17	ENSODEG00000019992	ARHGEF2 (ENSODEG00000011373) #19	SSR2 (ENSODEG00000010659) #20	UBQLN4 (ENSODEG00000010901) #21	LAMTOR2 (ENSODEG00000010141) #22	RAB25 (ENSODEG00000009908) #23	MEX3A (ENSODEG00000009643) #24	LMNA (ENSODEG00000009369) #25	SEMA4A (ENSODEG00000009359) #26	SLC25A44 (ENSODEG00000009774) #27	PMF1 (ENSODEG00000011902) #28	BGLAP (ENSODEG00000010926) #29	PAQR6 (ENSODEG00000010747) #30	SMG5 (ENSODEG00000012237) #31	TMEM79 (ENSODEG00000012508)	GLMP (ENSODEG00000009800) #33	ENSODEG00000009974 #34	RHBG (ENSODEG00000009136) #36	MEF2D (ENSODEG00000010190) #37	IQGAP3 (ENSODEG00000010076)
Long-tailed chinchilla	MODERN SPECIES	252	CLK2 (ENSCLAG00000003873) #7	HCN3 (ENSCLAG00000005021) #8	PKLR (ENSCLAG00000005136) #9	FDPS (ENSCLAG00000005410) #10	RUSC1 (ENSCLAG00000005579) #11	ASH1L (ENSCLAG00000004536) #12	DAP3 (ENSCLAG00000005599)	MSTO1 (ENSCLAG00000006273) #13	ENSCLAG00000006556 #14	SYT11 (ENSCLAG00000013172) #15	RIT1 (ENSCLAG00000013305) #16	KHDC4 (ENSCLAG00000010544) #17	ARHGEF2 (ENSCLAG00000013596) #19	SSR2 (ENSCLAG00000003363) #20	UBQLN4 (ENSCLAG00000003519) #21	LAMTOR2 (ENSCLAG00000003700) #22	RAB25 (ENSCLAG00000003784) #23	MEX3A (ENSCLAG00000003842) #24	LMNA (ENSCLAG00000003894) #25	SEMA4A (ENSCLAG00000005297) #26	SLC25A44 (ENSCLAG00000005587) #27	PMF1 (ENSCLAG00000003672) #28	BGLAP (ENSCLAG00000003710) #29	PAQR6 (ENSCLAG00000003899) #30	SMG5 (ENSCLAG00000003983) #31	TMEM79 (ENSCLAG00000004142)	GLMP (ENSCLAG00000004192) #33	ENSCLAG00000004359 #34	RHBG (ENSCLAG00000004625) #36	MEF2D (ENSCLAG00000004702) #37	IQGAP3 (ENSCLAG00000004927)
Naked mole-rat female	MODERN SPECIES	10			ENSHGLG00000005618 #10	ENSHGLG00000006300 #11	ENSHGLG00000049863	ASH1L (ENSHGLG00000008090) #12	DAP3 (ENSHGLG00000013978)	MSTO1 (ENSHGLG00000018369) #13	ENSHGLG00000006556 #14	SYT11 (ENSHGLG00000032288) #15	ENSHGLG00000034706 #16	KHDC4 (ENSHGLG00000010495) #17	RXFP4 (ENSHGLG00000037004) #18	SSR2 (ENSHGLG00000035940) #20	UBQLN4 (ENSHGLG00000003684) #21	LAMTOR2 (ENSHGLG00000036352) #22	RAB25 (ENSHGLG00000005517) #23	MEX3A (ENSHGLG00000041429) #24	ENSHGLG00000036594 #25	SEMA4A (ENSHGLG00000003587) #26	SLC25A44 (ENSHGLG00000042222) #27	ENSHGLG00000007944 #29	PAQR6 (ENSHGLG00000015640) #30	SMG5 (ENSHGLG00000019152) #31	TMEM79 (ENSHGLG00000018185)	GLMP (ENSHGLG00000041332) #33	ENSHGLG00000003153 #34	RHBG (ENSHGLG00000005998) #36	MEF2D (ENSHGLG00000019055) #37	IQGAP3 (ENSHGLG00000018362)	NAXE (ENSHGLG00000007354)
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Muroidea	ANCESTRAL SPECIES	6	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224.x #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224.x #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Northern American deer mouse	MODERN SPECIES	19	Hcn3 (ENSPEMG00000009033) #8	Pklr (ENSPEMG00000010915) #9	Fdps (ENSPEMG00000030569) #10	Rusc1 (ENSPEMG00000018232) #11	Ash1l (ENSPEMG00000006789) #12	ENSPEMG00000019185	Msto1 (ENSPEMG00000016178) #13	Gon4l (ENSPEMG00000017252) #14	Syt11 (ENSPEMG00000003809) #15	Rit1 (ENSPEMG00000030433) #16	Khdc4 (ENSPEMG00000007794) #17	Rxfp4 (ENSPEMG00000011662) #18	Arhgef2 (ENSPEMG00000002997) #19	Ssr2 (ENSPEMG00000012464) #20	Ubqln4 (ENSPEMG00000016759) #21	Lamtor2 (ENSPEMG00000009818) #22	Rab25 (ENSPEMG00000007548) #23	Mex3a (ENSPEMG00000019014) #24	Lmna (ENSPEMG00000015821) #25	Sema4a (ENSPEMG00000015516) #26	Slc25a44 (ENSPEMG00000013362) #27	Pmf1 (ENSPEMG00000012625) #28	ENSPEMG00000025586 #29	Paqr6 (ENSPEMG00000002777) #30	Smg5 (ENSPEMG00000001819) #31	Tmem79 (ENSPEMG00000007739)	Glmp (ENSPEMG00000013529) #33	Cct3 (ENSPEMG00000015732) #34	Tsacc (ENSPEMG00000014593) #35	Rhbg (ENSPEMG00000011996) #36	Mef2d (ENSPEMG00000019035) #37
Prairie vole	MODERN SPECIES	8											ENSMOCG00000007816 #17	ENSMOCG00000019234 #19	ENSMOCG00000020991 #19	Ssr2 (ENSMOCG00000001890) #20	ENSMOCG00000013140 #21	Lamtor2 (ENSMOCG00000018988) #22	Rab25 (ENSMOCG00000010953) #23	Mex3a (ENSMOCG00000017881) #24	Lmna (ENSMOCG00000011854) #25	Sema4a (ENSMOCG00000022467) #26	Slc25a44 (ENSMOCG00000014671) #27	ENSMOCG00000018426 #28	ENSMOCG00000019680 #29	Paqr6 (ENSMOCG00000006437) #30	Smg5 (ENSMOCG00000016590) #31	Tmem79 (ENSMOCG00000017414)	Glmp (ENSMOCG00000009096) #33	Cct3 (ENSMOCG00000010144) #34	Tsacc (ENSMOCG00000013419) #35	ENSMOCG00000022002	Rhbg (ENSMOCG00000005326) #36
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224.x #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Chinese hamster chok1gshd	MODERN SPECIES	352	Pklr (ENSCGRG00001023372) #9	ENSCGRG00001023534	Fdps (ENSCGRG00001025003) #10	Rusc1 (ENSCGRG00001009459) #11	Ash1l (ENSCGRG00001011192) #12	Dap3 (ENSCGRG00001022521)	Msto1 (ENSCGRG00001015681) #13	Gon4l (ENSCGRG00001023253) #14	Syt11 (ENSCGRG00001023824) #15	Rit1 (ENSCGRG00001004542) #16	Khdc4 (ENSCGRG00001012564) #17	Rxfp4 (ENSCGRG00001002374) #18	Arhgef2 (ENSCGRG00001006987) #19	Ssr2 (ENSCGRG00001006822) #20	Ubqln4 (ENSCGRG00001019653) #21	Lamtor2 (ENSCGRG00001008748) #22	Rab25 (ENSCGRG00001017341) #23	Mex3a (ENSCGRG00001000412) #24	Lmna (ENSCGRG00001003129) #25	Sema4a (ENSCGRG00001020918) #26	Slc25a44 (ENSCGRG00001021651) #27	Pmf1 (ENSCGRG00001010918) #28	ENSCGRG00001014532 #29	Paqr6 (ENSCGRG00001016796) #30	Smg5 (ENSCGRG00001006336) #31	Tmem79 (ENSCGRG00001024551)	Glmp (ENSCGRG00001007094) #33	Cct3 (ENSCGRG00001015935) #34	Tsacc (ENSCGRG00001019825) #35	Rhbg (ENSCGRG00001000730) #36	Mef2d (ENSCGRG00001013661) #37
Golden Hamster	MODERN SPECIES	714	Clk2 (ENSMAUG00000016789) #7	Hcn3 (ENSMAUG00000017469) #8	Pklr (ENSMAUG00000012808) #9	Fdps (ENSMAUG00000020872) #10	ENSMAUG00000017088 #11	Ash1l (ENSMAUG00000000702) #12	Msto1 (ENSMAUG00000020345) #13	ENSMAUG00000000631 #14	ENSMAUG00000013419 #15	Rit1 (ENSMAUG00000000572) #16	Khdc4 (ENSMAUG00000019676) #17	ENSMAUG00000013645 #19	ENSMAUG00000019940 #19	Ssr2 (ENSMAUG00000021161) #20	Ubqln4 (ENSMAUG00000007686) #21	Lamtor2 (ENSMAUG00000000547) #22	Mex3a (ENSMAUG00000012601) #24	Lmna (ENSMAUG00000012838) #25	ENSMAUG00000017061 #26	Slc25a44 (ENSMAUG00000021047) #27	Pmf1 (ENSMAUG00000019629) #28	ENSMAUG00000015288 #29	Paqr6 (ENSMAUG00000010297) #30	Smg5 (ENSMAUG00000010381) #31	Tmem79 (ENSMAUG00000014791)	ENSMAUG00000014449 #34	Tsacc (ENSMAUG00000016723) #35	Rhbg (ENSMAUG00000009341) #36	Mef2d (ENSMAUG00000016452) #37	Iqgap3 (ENSMAUG00000008455)	ENSMAUG00000018760
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b.u #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Rat	DUPLICATION
Rat	MODERN SPECIES	17	OR6c8 (ENSRNOG00000043334)	Or6c63 (ENSRNOG00000043299)	Or10p22 (ENSRNOG00000064513)	Olr876 (ENSRNOG00000067859)	Mettl7b (ENSRNOG00000007927)	Itga7 (ENSRNOG00000007905)	Bloc1s1 (ENSRNOG00000007784)	Cd63 (ENSRNOG00000007650)	Gdf11 (ENSRNOG00000007610)	Sarnp (ENSRNOG00000030520)	Ormdl2 (ENSRNOG00000030120)	Dnajc14 (ENSRNOG00000006844)	Tmem198b (ENSRNOG00000006827)	Mmp19 (ENSRNOG00000006778)	Pym1 (ENSRNOG00000058130)	ENSRNOG00000066475 #22	Dgka (ENSRNOG00000022943)	Pmel (ENSRNOG00000023085)	Cdk2 (ENSRNOG00000006469)	Rab5b (ENSRNOG00000006130)	Suox (ENSRNOG00000005987)	Ikzf4 (ENSRNOG00000005535)	Erbb3 (ENSRNOG00000004964)	Pa2g4 (ENSRNOG00000004904)	Zc3h10 (ENSRNOG00000040281)	Rps15-ps2 (ENSRNOG00000043026)	Esyt1 (ENSRNOG00000060753)	LOC120093525 (ENSRNOG00000028837)	Myl6 (ENSRNOG00000054140)	Smarcc2 (ENSRNOG00000031135)	Rnf41 (ENSRNOG00000023456)
Rat	MODERN SPECIES	11	Entrep3 (ENSRNOG00000020518)	Scamp3 (ENSRNOG00000020500) #7	Hcn3 (ENSRNOG00000020444) #8	Pklr (ENSRNOG00000020420) #9	Fdps (ENSRNOG00000043377) #11	Ash1l (ENSRNOG00000020386) #12	Dap3 (ENSRNOG00000020373)	Msto1 (ENSRNOG00000020357) #13	Gon4l (ENSRNOG00000020297) #14	Syt11 (ENSRNOG00000020279) #15	Rit1 (ENSRNOG00000064584) #16	Khdc4 (ENSRNOG00000020139) #17	Arhgef2 (ENSRNOG00000020027) #19	Ssr2 (ENSRNOG00000019940) #20	Ubqln4 (ENSRNOG00000019933) #21	Lamtor2 (ENSRNOG00000019908) #22	Rab25 (ENSRNOG00000023640) #23	Mex3a (ENSRNOG00000058654) #24	Lmna (ENSRNOG00000019638) #25	Sema4a (ENSRNOG00000019737) #26	Slc25a44 (ENSRNOG00000025269) #27	Pmf1 (ENSRNOG00000019620) #28	Bglap (ENSRNOG00000019607) #29	Paqr6 (ENSRNOG00000026059) #30	Smg5 (ENSRNOG00000019590) #31	Tmem79 (ENSRNOG00000019414)	Glmp (ENSRNOG00000019281) #33	Cct3 (ENSRNOG00000019090) #34	Tsacc (ENSRNOG00000037552) #35	Rhbg (ENSRNOG00000019412) #36	Mef2d (ENSRNOG00000031778) #37
Mus	ANCESTRAL SPECIES	7	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b.u #11	ENSGT00900000141033.b.b.v #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a.b #36	ENSGT00950000182844.b.b.a.a #36
Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b.u #11	ENSGT00900000141033.b.b.v #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131.e #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a.b #36	ENSGT00950000182844.b.b.a.a #36
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b.u #11	ENSGT00900000141033.b.b.v #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131.e #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a.b #36	ENSGT00950000182844.b.b.a.a #36
Mouse	MODERN SPECIES	12	Hcn3 (ENSMUSG00000028051) #8	Pklr (ENSMUSG00000041237) #9	Fdps (ENSMUSG00000059743) #10	Rusc1 (ENSMUSG00000041263) #11	Ash1l (ENSMUSG00000028053) #12	Dap3 (ENSMUSG00000068921)	Msto1 (ENSMUSG00000068922) #13	Gon4l (ENSMUSG00000054199) #14	Syt11 (ENSMUSG00000068923) #15	Rit1 (ENSMUSG00000028057) #16	Khdc4 (ENSMUSG00000028060) #17	Rxfp4 (ENSMUSG00000049741) #18	Arhgef2 (ENSMUSG00000028059) #19	Ssr2 (ENSMUSG00000041355) #20	Ubqln4 (ENSMUSG00000008604) #21	Lamtor2 (ENSMUSG00000028062) #22	Rab25 (ENSMUSG00000008601) #23	Mex3a (ENSMUSG00000074480) #24	Lmna (ENSMUSG00000028063) #25	Sema4a (ENSMUSG00000028064) #26	Slc25a44 (ENSMUSG00000050144) #27	Pmf1 (ENSMUSG00000028066) #28	Bglap (ENSMUSG00000074483) #29	Bglap2 (ENSMUSG00000074486) #29	Bglap3 (ENSMUSG00000074489) #29	Paqr6 (ENSMUSG00000041423) #30	Smg5 (ENSMUSG00000001415) #31	Tmem79 (ENSMUSG00000001420)	Glmp (ENSMUSG00000001418) #33	Cct3 (ENSMUSG00000001416) #34	Tsacc (ENSMUSG00000010538) #35
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b.u #11	ENSGT00900000141033.b.b.v #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131.e #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a.b #36	ENSGT00950000182844.b.b.a.a #36
Steppe mouse	MODERN SPECIES	2494									Syt11 (ENSMSIG00000028436) #15	Rit1 (ENSMSIG00000028448) #16	Khdc4 (ENSMSIG00000028451) #17	ENSMSIG00000028469	Arhgef2 (ENSMSIG00000028473) #19	Ssr2 (ENSMSIG00000029173) #20	Ubqln4 (ENSMSIG00000029187) #21	Lamtor2 (ENSMSIG00000029190) #22	Rab25 (ENSMSIG00000029192) #23	ENSMSIG00000029193 #24	Lmna (ENSMSIG00000029196) #25	Sema4a (ENSMSIG00000029207) #26	ENSMSIG00000029223	Slc25a44 (ENSMSIG00000029225) #27	Pmf1 (ENSMSIG00000029235) #28	ENSMSIG00000029238 #29	ENSMSIG00000029245 #30	Smg5 (ENSMSIG00000029250) #31	Tmem79 (ENSMSIG00000029273)	Glmp (ENSMSIG00000029280) #33	Cct3 (ENSMSIG00000029307) #34	ENSMSIG00000029349 #35
spretus	MODERN SPECIES	12	Pklr (MGP_SPRETEiJ_G0026130) #9	Fdps (MGP_SPRETEiJ_G0026129) #10	Rusc1 (MGP_SPRETEiJ_G0026128) #11	MGP_SPRETEiJ_G0026127 #11	Ash1l (MGP_SPRETEiJ_G0026126) #12	Dap3 (MGP_SPRETEiJ_G0026125)	Msto1 (MGP_SPRETEiJ_G0026124) #13	Gon4l (MGP_SPRETEiJ_G0026123) #14	Syt11 (MGP_SPRETEiJ_G0026122) #15	Rit1 (MGP_SPRETEiJ_G0026121) #16	Khdc4 (MGP_SPRETEiJ_G0026120) #17	Rxfp4 (MGP_SPRETEiJ_G0026119) #18	Arhgef2 (MGP_SPRETEiJ_G0026118) #19	Ssr2 (MGP_SPRETEiJ_G0026117) #20	Ubqln4 (MGP_SPRETEiJ_G0026116) #21	Lamtor2 (MGP_SPRETEiJ_G0026115) #22	Rab25 (MGP_SPRETEiJ_G0026114) #23	MGP_SPRETEiJ_G0026113 #24	Lmna (MGP_SPRETEiJ_G0026112) #25	Sema4a (MGP_SPRETEiJ_G0026111) #26	Slc25a44 (MGP_SPRETEiJ_G0026110) #27	Pmf1 (MGP_SPRETEiJ_G0026109) #28	MGP_SPRETEiJ_G0026107 #29	MGP_SPRETEiJ_G0026108 #29	MGP_SPRETEiJ_G0026106 #29	Paqr6 (MGP_SPRETEiJ_G0026105) #30	Smg5 (MGP_SPRETEiJ_G0026104) #31	Tmem79 (MGP_SPRETEiJ_G0026103)	Glmp (MGP_SPRETEiJ_G0026102) #33	Cct3 (MGP_SPRETEiJ_G0026101) #34	Tsacc (MGP_SPRETEiJ_G0026100) #35
Ryukyu mouse	MODERN SPECIES	12	Pklr (MGP_CAROLIEiJ_G0025187) #9	Fdps (MGP_CAROLIEiJ_G0025186) #10	Rusc1 (MGP_CAROLIEiJ_G0025185) #11	MGP_CAROLIEiJ_G0025184 #11	Ash1l (MGP_CAROLIEiJ_G0025183) #12	Dap3 (MGP_CAROLIEiJ_G0025182)	Msto1 (MGP_CAROLIEiJ_G0025181) #13	MGP_CAROLIEiJ_G0025180 #14	Syt11 (MGP_CAROLIEiJ_G0025179) #15	Rit1 (MGP_CAROLIEiJ_G0025178) #16	Khdc4 (MGP_CAROLIEiJ_G0025177) #17	Rxfp4 (MGP_CAROLIEiJ_G0025176) #18	Arhgef2 (MGP_CAROLIEiJ_G0025175) #19	Ssr2 (MGP_CAROLIEiJ_G0025174) #20	Ubqln4 (MGP_CAROLIEiJ_G0025173) #21	Lamtor2 (MGP_CAROLIEiJ_G0025172) #22	Rab25 (MGP_CAROLIEiJ_G0025171) #23	Mex3a (MGP_CAROLIEiJ_G0025170) #24	Lmna (MGP_CAROLIEiJ_G0025169) #25	Sema4a (MGP_CAROLIEiJ_G0025168) #26	Slc25a44 (MGP_CAROLIEiJ_G0025167) #27	Pmf1 (MGP_CAROLIEiJ_G0025166) #28	MGP_CAROLIEiJ_G0025165 #29	Paqr6 (MGP_CAROLIEiJ_G0025164) #30	Smg5 (MGP_CAROLIEiJ_G0025163) #31	Tmem79 (MGP_CAROLIEiJ_G0025162)	Glmp (MGP_CAROLIEiJ_G0025161) #33	Cct3 (MGP_CAROLIEiJ_G0025160) #34	Tsacc (MGP_CAROLIEiJ_G0025159) #35	MGP_CAROLIEiJ_G0025158 #36	Rhbg (MGP_CAROLIEiJ_G0025157) #36
Shrew mouse	MODERN SPECIES	17	Hcn3 (MGP_PahariEiJ_G0026632) #8	Pklr (MGP_PahariEiJ_G0026631) #9	Fdps (MGP_PahariEiJ_G0026630) #10	Rusc1 (MGP_PahariEiJ_G0026629) #11	MGP_PahariEiJ_G0026628 #11	Ash1l (MGP_PahariEiJ_G0026627) #12	Dap3 (MGP_PahariEiJ_G0026626)	MGP_PahariEiJ_G0026625 #13	Gon4l (MGP_PahariEiJ_G0026624) #14	Syt11 (MGP_PahariEiJ_G0026623) #15	Rit1 (MGP_PahariEiJ_G0026622) #16	Khdc4 (MGP_PahariEiJ_G0026621) #17	Arhgef2 (MGP_PahariEiJ_G0026620) #19	Ssr2 (MGP_PahariEiJ_G0026619) #20	Ubqln4 (MGP_PahariEiJ_G0026618) #21	Lamtor2 (MGP_PahariEiJ_G0026617) #22	Rab25 (MGP_PahariEiJ_G0026616) #23	Mex3a (MGP_PahariEiJ_G0026615) #24	Lmna (MGP_PahariEiJ_G0026614) #25	Sema4a (MGP_PahariEiJ_G0026613) #26	Slc25a44 (MGP_PahariEiJ_G0026612) #27	Pmf1 (MGP_PahariEiJ_G0026611) #28	MGP_PahariEiJ_G0026609 #29	MGP_PahariEiJ_G0026610 #29	Paqr6 (MGP_PahariEiJ_G0026607) #30	Smg5 (MGP_PahariEiJ_G0026606) #31	Tmem79 (MGP_PahariEiJ_G0026605)	Glmp (MGP_PahariEiJ_G0026604) #33	MGP_PahariEiJ_G0026603 #34	Tsacc (MGP_PahariEiJ_G0026602) #35	MGP_PahariEiJ_G0026601 #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	497	Clk2 (ENSNGAG00000022518) #7	Hcn3 (ENSNGAG00000021908) #8	Pklr (ENSNGAG00000019876) #9	Rusc1 (ENSNGAG00000008260) #11	Ash1l (ENSNGAG00000021986) #12	Dap3 (ENSNGAG00000014173)	Msto1 (ENSNGAG00000022769) #13	Gon4l (ENSNGAG00000020844) #14	Syt11 (ENSNGAG00000013529) #15	Rit1 (ENSNGAG00000013104) #16	Khdc4 (ENSNGAG00000012421) #17	ENSNGAG00000011350 #19	ENSNGAG00000009107 #19	Ssr2 (ENSNGAG00000002859) #20	Ubqln4 (ENSNGAG00000020831) #21	Lamtor2 (ENSNGAG00000020249) #22	Rab25 (ENSNGAG00000019999) #23	Mex3a (ENSNGAG00000019587) #24	Lmna (ENSNGAG00000017368) #25	Sema4a (ENSNGAG00000012750) #26	Slc25a44 (ENSNGAG00000010575) #27	Pmf1 (ENSNGAG00000007750) #28	ENSNGAG00000001625 #29	Paqr6 (ENSNGAG00000000673) #30	Smg5 (ENSNGAG00000020706) #31	Tmem79 (ENSNGAG00000020294)	Glmp (ENSNGAG00000019347) #33	Cct3 (ENSNGAG00000016875) #34	Rhbg (ENSNGAG00000019322) #36	Mef2d (ENSNGAG00000016036) #37	Iqgap3 (ENSNGAG00000020879)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	141	Hcn3 (ENSJJAG00000017693) #8	Pklr (ENSJJAG00000019099) #9	Rusc1 (ENSJJAG00000001429) #11	Ash1l (ENSJJAG00000017942) #12	Dap3 (ENSJJAG00000010235)	Msto1 (ENSJJAG00000019140) #13	ENSJJAG00000013614 #14	ENSJJAG00000010636 #15	Rit1 (ENSJJAG00000023411) #16	ENSJJAG00000020627 #17	Rxfp4 (ENSJJAG00000013686) #18	ENSJJAG00000017646 #19	ENSJJAG00000016067 #19	Ssr2 (ENSJJAG00000024209) #20	Ubqln4 (ENSJJAG00000002118) #21	ENSJJAG00000021135 #22	Rab25 (ENSJJAG00000021013) #23	Mex3a (ENSJJAG00000020484) #24	Lmna (ENSJJAG00000019904) #25	Sema4a (ENSJJAG00000016229) #26	Slc25a44 (ENSJJAG00000001462) #27	Pmf1 (ENSJJAG00000013470) #28	ENSJJAG00000000652 #29	Paqr6 (ENSJJAG00000001367) #30	Smg5 (ENSJJAG00000022763) #31	Tmem79 (ENSJJAG00000023610)	ENSJJAG00000019201	Cct3 (ENSJJAG00000013939) #34	ENSJJAG00000017067	Mef2d (ENSJJAG00000011790) #37	Iqgap3 (ENSJJAG00000000649)
Lesser Egyptian jerboa	MODERN SPECIES	61	ENSJJAG00000014352	Smc2 (ENSJJAG00000024156)	ENSJJAG00000009857	ENSJJAG00000023304	Grin3a (ENSJJAG00000023914)	Rnf20 (ENSJJAG00000022147)	Aldob (ENSJJAG00000017193)	Zfp189 (ENSJJAG00000017677)	Mrpl50 (ENSJJAG00000015402)	Baat (ENSJJAG00000015081)	ENSJJAG00000022423	ENSJJAG00000023201	Plppr1 (ENSJJAG00000014625)	ENSJJAG00000018538	Cavin4 (ENSJJAG00000013719)	ENSJJAG00000011421 #22	ENSJJAG00000016219	Msantd3 (ENSJJAG00000019733)	Tex10 (ENSJJAG00000017725)	Invs (ENSJJAG00000020388)	Erp44 (ENSJJAG00000016276)	Stx17 (ENSJJAG00000014957)	Nr4a3 (ENSJJAG00000004481)	ENSJJAG00000003174	Alg2 (ENSJJAG00000004353)	Tgfbr1 (ENSJJAG00000008037)	ENSJJAG00000023162	Galnt12 (ENSJJAG00000008989)	Anks6 (ENSJJAG00000018199)	Tbc1d2 (ENSJJAG00000019681)	Coro2a (ENSJJAG00000022571)
Kangaroo rat	MODERN SPECIES	345	Pklr (ENSDORG00000011632) #9	ENSDORG00000028002	Fdps (ENSDORG00000005366) #10	ENSDORG00000024404 #11	ENSDORG00000025813 #11	Ash1l (ENSDORG00000025575) #12	Dap3 (ENSDORG00000003596)	Msto1 (ENSDORG00000029541) #13	Gon4l (ENSDORG00000003598) #14	Syt11 (ENSDORG00000023709) #15	Rit1 (ENSDORG00000014601) #16	Khdc4 (ENSDORG00000014602) #17	Arhgef2 (ENSDORG00000012162) #19	ENSDORG00000010536 #20	Ubqln4 (ENSDORG00000010538) #21	Lamtor2 (ENSDORG00000002923) #22	Rab25 (ENSDORG00000002922) #23	Mex3a (ENSDORG00000002921) #24	Lmna (ENSDORG00000002470) #25	Sema4a (ENSDORG00000008821) #26
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01090000260051.b.b	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Rabbit	MODERN SPECIES	4	FDPS (ENSOCUG00000033536) #10	ENSOCUG00000038913 #11	ASH1L (ENSOCUG00000014986) #12	ENSOCUG00000034353	DAP3 (ENSOCUG00000004785)	MSTO1 (ENSOCUG00000010186) #13	ENSOCUG00000010191 #14	ENSOCUG00000026145 #14	SYT11 (ENSOCUG00000027971) #15	RIT1 (ENSOCUG00000006377) #16	KHDC4 (ENSOCUG00000010430) #17	ENSOCUG00000026819	ARHGEF2 (ENSOCUG00000001937) #19	SSR2 (ENSOCUG00000008455) #20	UBQLN4 (ENSOCUG00000007156) #21	LAMTOR2 (ENSOCUG00000027994) #22	RAB25 (ENSOCUG00000005634) #23	ENSOCUG00000005640 #24	LMNA (ENSOCUG00000010011) #25	SEMA4A (ENSOCUG00000001326) #26	SLC25A44 (ENSOCUG00000012861) #27	PMF1 (ENSOCUG00000012870) #28	BGLAP (ENSOCUG00000025958) #29	SMG5 (ENSOCUG00000012886) #31	ENSOCUG00000012899	GLMP (ENSOCUG00000026609) #33	CCT3 (ENSOCUG00000000137) #34	TSACC (ENSOCUG00000029754) #35	RHBG (ENSOCUG00000016130) #36	MEF2D (ENSOCUG00000012173) #37	TTC24 (ENSOCUG00000023015)
Pika	MODERN SPECIES	3341													ARHGEF2 (ENSOPRG00000002782) #19	SSR2 (ENSOPRG00000002830) #20	UBQLN4 (ENSOPRG00000002851) #21	LAMTOR2 (ENSOPRG00000002877) #22	RAB25 (ENSOPRG00000002894) #23	MEX3A (ENSOPRG00000002937) #24	LMNA (ENSOPRG00000002966) #25	SEMA4A (ENSOPRG00000002992) #26	SLC25A44 (ENSOPRG00000003022) #27
Tree shrew	MODERN SPECIES	3906												RXFP4 (ENSTBEG00000001002) #18	ARHGEF2 (ENSTBEG00000001641) #19	SSR2 (ENSTBEG00000002867) #20	UBQLN4 (ENSTBEG00000003066) #21	LAMTOR2 (ENSTBEG00000003768) #22	RAB25 (ENSTBEG00000004142) #23	LMNA (ENSTBEG00000005069) #25
Primates	ANCESTRAL SPECIES	7	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Lemuriformes	ANCESTRAL SPECIES	11	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Lemuriformes_a	ANCESTRAL SPECIES	19	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Coquerels sifaka	MODERN SPECIES	750	HCN3 (ENSPCOG00000021822) #8	PKLR (ENSPCOG00000028225) #9	ENSPCOG00000022505 #10	RUSC1 (ENSPCOG00000025947) #11	ASH1L (ENSPCOG00000017924) #12	DAP3 (ENSPCOG00000027412)	MSTO1 (ENSPCOG00000017579) #13	ENSPCOG00000024149 #14	SYT11 (ENSPCOG00000017038) #15	RIT1 (ENSPCOG00000027211) #16	KHDC4 (ENSPCOG00000027660) #17	ARHGEF2 (ENSPCOG00000016528) #19	ENSPCOG00000019355	SSR2 (ENSPCOG00000022217) #20	UBQLN4 (ENSPCOG00000017664) #21	LAMTOR2 (ENSPCOG00000023468) #22	RAB25 (ENSPCOG00000005144) #23	MEX3A (ENSPCOG00000019307) #24	ENSPCOG00000028240 #25	SEMA4A (ENSPCOG00000021582) #26	SLC25A44 (ENSPCOG00000017429) #27	ENSPCOG00000022530	BGLAP (ENSPCOG00000020241) #29	PAQR6 (ENSPCOG00000024324) #30	SMG5 (ENSPCOG00000004741) #31	TMEM79 (ENSPCOG00000027811)	GLMP (ENSPCOG00000027438) #33	CCT3 (ENSPCOG00000027102) #34	TSACC (ENSPCOG00000018038) #35	RHBG (ENSPCOG00000010688) #36	MEF2D (ENSPCOG00000027219) #37
Greater bamboo lemur	MODERN SPECIES	1411											KHDC4 (ENSPSMG00000006345) #17	RXFP4 (ENSPSMG00000006340) #18	ARHGEF2 (ENSPSMG00000006180) #19	SSR2 (ENSPSMG00000006059) #20	UBQLN4 (ENSPSMG00000006027) #21	LAMTOR2 (ENSPSMG00000006010) #22	RAB25 (ENSPSMG00000006001) #23	MEX3A (ENSPSMG00000005991) #24
Mouse lemur	MODERN SPECIES	11	HCN3 (ENSMICG00000030454) #8	PKLR (ENSMICG00000007458) #9	ENSMICG00000007468 #10	RUSC1 (ENSMICG00000029028) #11	ASH1L (ENSMICG00000007490) #12	DAP3 (ENSMICG00000031947)	MSTO1 (ENSMICG00000028414) #13	ENSMICG00000002183 #14	SYT11 (ENSMICG00000038586) #15	RIT1 (ENSMICG00000044667) #16	KHDC4 (ENSMICG00000002202) #17	ARHGEF2 (ENSMICG00000002212) #19	ENSMICG00000030729	ENSMICG00000038131 #20	UBQLN4 (ENSMICG00000002222) #21	LAMTOR2 (ENSMICG00000002227) #22	RAB25 (ENSMICG00000002230) #23	MEX3A (ENSMICG00000046214) #24	LMNA (ENSMICG00000002236) #25	SEMA4A (ENSMICG00000002242) #26	SLC25A44 (ENSMICG00000047168) #27	ENSMICG00000002248	BGLAP (ENSMICG00000045135) #29	PAQR6 (ENSMICG00000002252) #30	SMG5 (ENSMICG00000002257) #31	TMEM79 (ENSMICG00000002260)	GLMP (ENSMICG00000002263) #33	ENSMICG00000038362	ENSMICG00000030201 #34	TSACC (ENSMICG00000002266) #35	RHBG (ENSMICG00000017784) #36
Bushbaby	MODERN SPECIES	206	CLK2 (ENSOGAG00000009589) #7	HCN3 (ENSOGAG00000009594) #8	PKLR (ENSOGAG00000028418) #9	RUSC1 (ENSOGAG00000025498) #11	ASH1L (ENSOGAG00000009609) #12	DAP3 (ENSOGAG00000000845)	MSTO1 (ENSOGAG00000031236) #13	ENSOGAG00000000849 #14	SYT11 (ENSOGAG00000002258) #15	ENSOGAG00000002260 #16	KHDC4 (ENSOGAG00000002261) #17	ENSOGAG00000026040	ARHGEF2 (ENSOGAG00000011581) #19	SSR2 (ENSOGAG00000016945) #20	UBQLN4 (ENSOGAG00000016948) #21	LAMTOR2 (ENSOGAG00000016953) #22	RAB25 (ENSOGAG00000016955) #23	MEX3A (ENSOGAG00000029891) #24	LMNA (ENSOGAG00000016961) #25	SEMA4A (ENSOGAG00000025069) #26	ENSOGAG00000034650 #27	PMF1 (ENSOGAG00000004964) #28	BGLAP (ENSOGAG00000025659) #29	PAQR6 (ENSOGAG00000031893) #30	SMG5 (ENSOGAG00000004966) #31	TMEM79 (ENSOGAG00000012912)	GLMP (ENSOGAG00000030120) #33	CCT3 (ENSOGAG00000008967) #34	TSACC (ENSOGAG00000031578) #35	RHBG (ENSOGAG00000006682) #36	MEF2D (ENSOGAG00000011222) #37
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Tarsier	MODERN SPECIES	1540															UBQLN4 (ENSTSYG00000011830) #21	LAMTOR2 (ENSTSYG00000028246) #22
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00390000012642	ENSGT00900000141074.e.b #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000016256.l #14	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00900000141074.f #10	ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000016256.l.b #14	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00900000141074.f #10	ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000016256.l.b #14	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Hominidae	ANCESTRAL SPECIES	6	ENSGT00900000141074.f #10	ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000016256.l.b #14	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00530000064067.d #13	ENSGT00390000016256.l.b #14	ENSGT00390000015248	ENSGT00530000064067.c.b #13	ENSGT00530000064067.c.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Gorilla	MODERN SPECIES		RUSC1 (ENSGGOG00000000408) #11	ASH1L (ENSGGOG00000011218) #12	ENSGGOG00000000475 #13	YY1AP1 (ENSGGOG00000026024) #14	DAP3 (ENSGGOG00000007618)	ENSGGOG00000040593 #13	GON4L (ENSGGOG00000000477) #14	ENSGGOG00000025183 #14	SYT11 (ENSGGOG00000010111) #15	RIT1 (ENSGGOG00000001461) #16	KHDC4 (ENSGGOG00000024568) #17	RXFP4 (ENSGGOG00000034869) #18	ARHGEF2 (ENSGGOG00000005907) #19	SSR2 (ENSGGOG00000024769) #20	ENSGGOG00000008916 #21	LAMTOR2 (ENSGGOG00000006818) #22	RAB25 (ENSGGOG00000006821) #23	MEX3A (ENSGGOG00000004513) #24	LMNA (ENSGGOG00000000813) #25	SEMA4A (ENSGGOG00000000814) #26	SLC25A44 (ENSGGOG00000010910) #27	PMF1 (ENSGGOG00000037793) #28	BGLAP (ENSGGOG00000010916) #29	ENSGGOG00000010923 #30	SMG5 (ENSGGOG00000010932) #31	TMEM79 (ENSGGOG00000014240)	GLMP (ENSGGOG00000014243) #33	CCT3 (ENSGGOG00000023333) #34	TSACC (ENSGGOG00000008582) #35	RHBG (ENSGGOG00000007638) #36	ENSGGOG00000034972
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00530000064067.d #13	ENSGT00390000016256.l.b #14	ENSGT00390000015248	ENSGT00530000064067.c.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Pan	ANCESTRAL SPECIES		ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000155046.t.g.b.b	ENSGT00940000156698 #12	ENSGT00390000016256.l.b #14	ENSGT00390000015248	ENSGT00530000064067.c.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES		RUSC1 (ENSPTRG00000001424) #11	ASH1L (ENSPTRG00000001425) #12	ENSPTRG00000047569	CLDN6 (ENSPTRG00000045058)	YY1AP1 (ENSPTRG00000001429) #14	DAP3 (ENSPTRG00000001430)	MSTO1 (ENSPTRG00000001428) #13	GON4L (ENSPTRG00000001433) #14	SYT11 (ENSPTRG00000001436) #15	RIT1 (ENSPTRG00000001437) #16	KHDC4 (ENSPTRG00000001438) #17	RXFP4 (ENSPTRG00000001439) #18	ARHGEF2 (ENSPTRG00000001441) #19	SSR2 (ENSPTRG00000001442) #20	UBQLN4 (ENSPTRG00000001444) #21	LAMTOR2 (ENSPTRG00000001445) #22	RAB25 (ENSPTRG00000001446) #23	MEX3A (ENSPTRG00000030373) #24	LMNA (ENSPTRG00000001447) #25	SEMA4A (ENSPTRG00000001448) #26	SLC25A44 (ENSPTRG00000001449) #27	PMF1 (ENSPTRG00000001450) #28	BGLAP (ENSPTRG00000041553) #29	PAQR6 (ENSPTRG00000001451) #30	SMG5 (ENSPTRG00000023925) #31	TMEM79 (ENSPTRG00000001453)	GLMP (ENSPTRG00000001455) #33	CCT3 (ENSPTRG00000001456) #34	TSACC (ENSPTRG00000001457)	RHBG (ENSPTRG00000001458) #36	ENSPTRG00000001459
Chimpanzee	MODERN SPECIES	199															ENSPTRG00000051805 #21	ENSPTRG00000048190 #22
Bonobo	MODERN SPECIES		RUSC1 (ENSPPAG00000030052) #11	ASH1L (ENSPPAG00000031869) #12	ENSPPAG00000036109	YY1AP1 (ENSPPAG00000041804) #14	DAP3 (ENSPPAG00000030901)	ENSPPAG00000035270	ENSPPAG00000028555 #13	GON4L (ENSPPAG00000030169) #14	SYT11 (ENSPPAG00000039359) #15	RIT1 (ENSPPAG00000043026) #16	KHDC4 (ENSPPAG00000028145) #17	RXFP4 (ENSPPAG00000011483) #18	ARHGEF2 (ENSPPAG00000043187) #19	ENSPPAG00000036187 #20	UBQLN4 (ENSPPAG00000040262) #21	LAMTOR2 (ENSPPAG00000037502) #22	RAB25 (ENSPPAG00000031127) #23	MEX3A (ENSPPAG00000016303) #24	LMNA (ENSPPAG00000037857) #25	SEMA4A (ENSPPAG00000043828) #26	SLC25A44 (ENSPPAG00000027895) #27	ENSPPAG00000034289	BGLAP (ENSPPAG00000042608) #29	ENSPPAG00000027236 #30	SMG5 (ENSPPAG00000011996) #31	TMEM79 (ENSPPAG00000042037)	GLMP (ENSPPAG00000028749) #33	CCT3 (ENSPPAG00000042161) #34	TSACC (ENSPPAG00000040738) #35	RHBG (ENSPPAG00000032922) #36	ENSPPAG00000028566
Human	MODERN SPECIES		PKLR (ENSG00000143627) #9	FDPS (ENSG00000160752) #10	RUSC1 (ENSG00000160753) #11	ASH1L (ENSG00000116539) #12	MSTO1 (ENSG00000125459) #13	YY1AP1 (ENSG00000163374) #14	DAP3 (ENSG00000132676)	GON4L (ENSG00000116580) #14	SYT11 (ENSG00000132718) #15	RIT1 (ENSG00000143622) #16	KHDC4 (ENSG00000132680) #17	RXFP4 (ENSG00000173080) #18	ARHGEF2 (ENSG00000116584) #19	SSR2 (ENSG00000163479) #20	UBQLN4 (ENSG00000160803) #21	LAMTOR2 (ENSG00000116586) #22	RAB25 (ENSG00000132698) #23	MEX3A (ENSG00000254726) #24	LMNA (ENSG00000160789) #25	SEMA4A (ENSG00000196189) #26	SLC25A44 (ENSG00000160785) #27	PMF1-BGLAP (ENSG00000260238)	PMF1 (ENSG00000160783) #28	BGLAP (ENSG00000242252) #29	PAQR6 (ENSG00000160781) #30	SMG5 (ENSG00000198952) #31	TMEM79 (ENSG00000163472)	GLMP (ENSG00000198715) #33	VHLL (ENSG00000189030)	CCT3 (ENSG00000163468) #34	TSACC (ENSG00000163467) #35
Orangutan	MODERN SPECIES		RUSC1 (ENSPPYG00000000745) #11	ENSPPYG00000033728	ASH1L (ENSPPYG00000000744) #12	YY1AP1 (ENSPPYG00000000743) #14	DAP3 (ENSPPYG00000000742)	MSTO1 (ENSPPYG00000000740) #13	MSTO2P (ENSPPYG00000010648)	GON4L (ENSPPYG00000000739) #14	SYT11 (ENSPPYG00000039531) #15	RIT1 (ENSPPYG00000000737) #16	KHDC4 (ENSPPYG00000000736) #17	RXFP4 (ENSPPYG00000000735) #18	ARHGEF2 (ENSPPYG00000000734) #19	SSR2 (ENSPPYG00000000733) #20	UBQLN4 (ENSPPYG00000000732) #21	LAMTOR2 (ENSPPYG00000000731) #22	RAB25 (ENSPPYG00000000730) #23	MEX3A (ENSPPYG00000000729) #24	LMNA (ENSPPYG00000000728) #25	SEMA4A (ENSPPYG00000000727) #26	SLC25A44 (ENSPPYG00000000726) #27	ENSPPYG00000000725	PAQR6 (ENSPPYG00000000724) #30	SMG5 (ENSPPYG00000000723) #31	TMEM79 (ENSPPYG00000000722)	GLMP (ENSPPYG00000000721) #33	CCT3 (ENSPPYG00000010639) #34	ENSPPYG00000031428 #35	RHBG (ENSPPYG00000000718) #36	ENSPPYG00000000717	MEF2D (ENSPPYG00000000716) #37
Gibbon	MODERN SPECIES	2	FDPS (ENSNLEG00000012099) #10	ENSNLEG00000012125	RUSC1 (ENSNLEG00000012131) #11	ASH1L (ENSNLEG00000012163) #12	ENSNLEG00000012222 #13	YY1AP1 (ENSNLEG00000012206) #14	DAP3 (ENSNLEG00000012211)	ENSNLEG00000031265 #13	GON4L (ENSNLEG00000035449) #14	SYT11 (ENSNLEG00000012224) #15	RIT1 (ENSNLEG00000012228) #16	KHDC4 (ENSNLEG00000012238) #17	ENSNLEG00000012262	ARHGEF2 (ENSNLEG00000012264) #19	SSR2 (ENSNLEG00000032588) #20	LAMTOR2 (ENSNLEG00000035591) #22	RAB25 (ENSNLEG00000012323) #23	MEX3A (ENSNLEG00000012329) #24	LMNA (ENSNLEG00000012331) #25	SEMA4A (ENSNLEG00000012367) #26	ENSNLEG00000012408 #27	ENSNLEG00000033074 #28	BGLAP (ENSNLEG00000012409) #29	ENSNLEG00000012423 #30	SMG5 (ENSNLEG00000012439) #31	TMEM79 (ENSNLEG00000012481)	GLMP (ENSNLEG00000032477) #33	CCT3 (ENSNLEG00000012509) #34	TSACC (ENSNLEG00000012582) #35	RHBG (ENSNLEG00000012589) #36	ENSNLEG00000012606
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00900000141074.f #10	ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000016256.l.b #14	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35
Rhinopithecus	ANCESTRAL SPECIES	59					ENSGT00390000016256.l.a.a #14	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b.c	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35
Black snub-nosed monkey	MODERN SPECIES	1571									DCDC2C (ENSRBIG00000042681)	ALLC (ENSRBIG00000032207)	KHDC4 (ENSRBIG00000013231) #17	RXFP4 (ENSRBIG00000032808) #18	ARHGEF2 (ENSRBIG00000035589) #19	SSR2 (ENSRBIG00000039430) #20	UBQLN4 (ENSRBIG00000033879) #21	LAMTOR2 (ENSRBIG00000043324) #22	RAB25 (ENSRBIG00000044154) #23	MEX3A (ENSRBIG00000033197) #24	LMNA (ENSRBIG00000041859) #25	SEMA4A (ENSRBIG00000037159) #26	ENSRBIG00000026928	SLC25A44 (ENSRBIG00000041041) #27	ENSRBIG00000036011	BGLAP (ENSRBIG00000000752) #29	ENSRBIG00000027798 #30	SMG5 (ENSRBIG00000027428) #31	ENSRBIG00000032628	GLMP (ENSRBIG00000030275) #33	CCT3 (ENSRBIG00000032821) #34	TSACC (ENSRBIG00000036225) #35	RHBG (ENSRBIG00000029171) #36
Golden snub-nosed monkey	MODERN SPECIES	1290															ENSRROG00000027233 #21	LAMTOR2 (ENSRROG00000045270) #22	RAB25 (ENSRROG00000028851) #23	MEX3A (ENSRROG00000029193) #24	LMNA (ENSRROG00000037915) #25	SEMA4A (ENSRROG00000043198) #26	ENSRROG00000044575	SLC25A44 (ENSRROG00000030201) #27	ENSRROG00000038103	PAQR6 (ENSRROG00000042038) #30	SMG5 (ENSRROG00000030035) #31	ENSRROG00000041912
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00900000141074.f #10	ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000016256.l.b #14	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35
Vervet Monkey	MODERN SPECIES	12	PKLR (ENSCSAG00000002021) #9	ENSCSAG00000002022 #10	RUSC1 (ENSCSAG00000002023) #11	ASH1L (ENSCSAG00000002027) #12	YY1AP1 (ENSCSAG00000002031) #14	DAP3 (ENSCSAG00000002035)	ENSCSAG00000002038 #13	GON4L (ENSCSAG00000002060) #14	SYT11 (ENSCSAG00000002072) #15	RIT1 (ENSCSAG00000002074) #16	KHDC4 (ENSCSAG00000002082) #17	ENSCSAG00000000059	ARHGEF2 (ENSCSAG00000002088) #19	SSR2 (ENSCSAG00000002090) #20	UBQLN4 (ENSCSAG00000002093) #21	LAMTOR2 (ENSCSAG00000002094) #22	RAB25 (ENSCSAG00000002096) #23	MEX3A (ENSCSAG00000002097) #24	LMNA (ENSCSAG00000002099) #25	SEMA4A (ENSCSAG00000002102) #26	SLC25A44 (ENSCSAG00000002104) #27	PMF1 (ENSCSAG00000002107) #28	BGLAP (ENSCSAG00000002112) #29	PAQR6 (ENSCSAG00000002117) #30	SMG5 (ENSCSAG00000002120) #31	TMEM79 (ENSCSAG00000002125)	GLMP (ENSCSAG00000002123) #33	CCT3 (ENSCSAG00000002128) #34	TSACC (ENSCSAG00000002131) #35	RHBG (ENSCSAG00000002135) #36	MEF2D (ENSCSAG00000002143) #37
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00530000064067.h #13	ENSGT00390000016256.l.b #14	ENSGT00390000015248	ENSGT00530000064067.g.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35
Macaca	ANCESTRAL SPECIES		ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000016256.l.a.a #14	ENSGT00390000016256.l.b #14	ENSGT00390000015248	ENSGT00530000064067.g.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Pig-tailed macaque	MODERN SPECIES	262	ENSMNEG00000041237 #10	ENSMNEG00000034281	RUSC1 (ENSMNEG00000037791) #11	ASH1L (ENSMNEG00000004882) #12	MSTO1 (ENSMNEG00000030351) #13	YY1AP1 (ENSMNEG00000038421) #14	DAP3 (ENSMNEG00000043408)	GON4L (ENSMNEG00000022837) #14	SYT11 (ENSMNEG00000039442) #15	RIT1 (ENSMNEG00000039545) #16	KHDC4 (ENSMNEG00000005131) #17	RXFP4 (ENSMNEG00000025991) #18	ARHGEF2 (ENSMNEG00000030024) #19	ENSMNEG00000036868 #20	UBQLN4 (ENSMNEG00000028661) #21	LAMTOR2 (ENSMNEG00000044990) #22	RAB25 (ENSMNEG00000004251) #23	MEX3A (ENSMNEG00000031569) #24	LMNA (ENSMNEG00000045506) #25	SEMA4A (ENSMNEG00000027619) #26	ENSMNEG00000041520	SLC25A44 (ENSMNEG00000032439) #27	PMF1 (ENSMNEG00000030198) #28	BGLAP (ENSMNEG00000014728) #29	ENSMNEG00000037204 #30	SMG5 (ENSMNEG00000044425) #31	TMEM79 (ENSMNEG00000040540)	GLMP (ENSMNEG00000034996) #33	CCT3 (ENSMNEG00000027103) #34	TSACC (ENSMNEG00000030389) #35	RHBG (ENSMNEG00000032887) #36
Macaca_a	ANCESTRAL SPECIES		ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000016256.l.a.a #14	ENSGT00390000016256.l.b #14	ENSGT00390000015248	ENSGT00530000064067.g.b #13	ENSGT00530000064067.g.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000005131 #33	ENSGT00390000002390.b	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00990000210932
Crab-eating macaque	MODERN SPECIES		RUSC1 (ENSMFAG00000042892) #11	ENSMFAG00000059657	ASH1L (ENSMFAG00000004660) #12	ENSMFAG00000050889 #14	ENSMFAG00000044446 #14	ENSMFAG00000056171	DAP3 (ENSMFAG00000031112)	MSTO1 (ENSMFAG00000031664) #13	GON4L (ENSMFAG00000035960) #14	SYT11 (ENSMFAG00000039413) #15	RIT1 (ENSMFAG00000054543) #16	KHDC4 (ENSMFAG00000003201) #17	ENSMFAG00000029955	ARHGEF2 (ENSMFAG00000034906) #19	SSR2 (ENSMFAG00000040060) #20	LAMTOR2 (ENSMFAG00000018166) #22	RAB25 (ENSMFAG00000000115) #23	MEX3A (ENSMFAG00000000628) #24	LMNA (ENSMFAG00000045463) #25	ENSMFAG00000054546	SEMA4A (ENSMFAG00000037487) #26	SLC25A44 (ENSMFAG00000003800) #27	PMF1 (ENSMFAG00000031299) #28	BGLAP (ENSMFAG00000056045) #29	ENSMFAG00000043399 #30	TMEM79 (ENSMFAG00000002046)	SMG5 (ENSMFAG00000045357) #31	CCT3 (ENSMFAG00000033146) #34	TSACC (ENSMFAG00000036557) #35	RHBG (ENSMFAG00000040010) #36	ENSMFAG00000005400
Rhesus	MODERN SPECIES		ENSMMUG00000063807	RUSC1 (ENSMMUG00000023145) #11	ENSMMUG00000058124	ENSMMUG00000009981 #13	ASH1L (ENSMMUG00000023146) #12	DAP3 (ENSMMUG00000018080)	ENSMMUG00000062397 #13	GON4L (ENSMMUG00000009987) #14	SYT11 (ENSMMUG00000021312) #15	RIT1 (ENSMMUG00000053454) #16	KHDC4 (ENSMMUG00000004648) #17	RXFP4 (ENSMMUG00000005090)	ARHGEF2 (ENSMMUG00000005092) #19	SSR2 (ENSMMUG00000013495) #20	UBQLN4 (ENSMMUG00000009983) #21	LAMTOR2 (ENSMMUG00000012126) #22	RAB25 (ENSMMUG00000022306) #23	MEX3A (ENSMMUG00000052160) #24	LMNA (ENSMMUG00000016096) #25	ENSMMUG00000037731	SEMA4A (ENSMMUG00000004901) #26	BGLAP (ENSMMUG00000004902) #27	PAQR6 (ENSMMUG00000000085) #30	SMG5 (ENSMMUG00000000090) #31	TMEM79 (ENSMMUG00000047929)	GLMP (ENSMMUG00000000092) #33	VHLL (ENSMMUG00000064443)	CCT3 (ENSMMUG00000019034) #34	TSACC (ENSMMUG00000051030) #35	RHBG (ENSMMUG00000017965) #36	ENSMMUG00000017966
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00530000064067.h #13	ENSGT00390000016256.l.b #14	ENSGT00390000015248	ENSGT00530000064067.g.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35
Olive baboon	MODERN SPECIES		FDPS (ENSPANG00000024920) #10	RUSC1 (ENSPANG00000006655) #11	ENSPANG00000045760	ASH1L (ENSPANG00000004959) #12	MSTO1 (ENSPANG00000006654) #13	YY1AP1 (ENSPANG00000029721) #14	DAP3 (ENSPANG00000001758)	GON4L (ENSPANG00000011456) #14	SYT11 (ENSPANG00000018152) #15	RIT1 (ENSPANG00000035332) #16	KHDC4 (ENSPANG00000011455) #17	ENSPANG00000004167	ARHGEF2 (ENSPANG00000006851) #19	SSR2 (ENSPANG00000005571) #20	UBQLN4 (ENSPANG00000001757) #21	LAMTOR2 (ENSPANG00000032414) #22	RAB25 (ENSPANG00000003113) #23	MEX3A (ENSPANG00000020303) #24	LMNA (ENSPANG00000003882) #25	SEMA4A (ENSPANG00000016075) #26	ENSPANG00000041668	SLC25A44 (ENSPANG00000008735) #27	PMF1 (ENSPANG00000010692) #28	BGLAP (ENSPANG00000023523) #29	PAQR6 (ENSPANG00000008734) #30	SMG5 (ENSPANG00000011201) #31	TMEM79 (ENSPANG00000011454)	GLMP (ENSPANG00000018021) #33	ENSPANG00000003881	CCT3 (ENSPANG00000026114) #34	TSACC (ENSPANG00000019713) #35
Cercopithecinae_d	ANCESTRAL SPECIES	33					ENSGT00390000016256.l.b #14	ENSGT00390000015248	ENSGT00530000064067.g.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35
Sooty mangabey	MODERN SPECIES	226					YY1AP1 (ENSCATG00000042138) #14	DAP3 (ENSCATG00000037832)	MSTO1 (ENSCATG00000041352) #13	GON4L (ENSCATG00000031497) #14	SYT11 (ENSCATG00000038729) #15	RIT1 (ENSCATG00000045033) #16	KHDC4 (ENSCATG00000034662) #17	RXFP4 (ENSCATG00000019172) #18	ARHGEF2 (ENSCATG00000029542) #19	SSR2 (ENSCATG00000030169) #20	UBQLN4 (ENSCATG00000023959) #21	LAMTOR2 (ENSCATG00000030341) #22	RAB25 (ENSCATG00000029662) #23	MEX3A (ENSCATG00000032390) #24	LMNA (ENSCATG00000033574) #25	SEMA4A (ENSCATG00000036260) #26	ENSCATG00000042076	SLC25A44 (ENSCATG00000039803) #27	PMF1 (ENSCATG00000029246) #28	BGLAP (ENSCATG00000014375) #29	PAQR6 (ENSCATG00000029286) #30	SMG5 (ENSCATG00000030539) #31	TMEM79 (ENSCATG00000041384)	GLMP (ENSCATG00000032524) #33	CCT3 (ENSCATG00000032970) #34	TSACC (ENSCATG00000032103) #35	RHBG (ENSCATG00000028238) #36
Drill	MODERN SPECIES	1097								GON4L (ENSMLEG00000039636) #14	SYT11 (ENSMLEG00000034240) #15	RIT1 (ENSMLEG00000030499) #16	KHDC4 (ENSMLEG00000036924) #17	RXFP4 (ENSMLEG00000000539) #18	ARHGEF2 (ENSMLEG00000038613) #19	SSR2 (ENSMLEG00000038454) #20	UBQLN4 (ENSMLEG00000036998) #21	LAMTOR2 (ENSMLEG00000020600) #22	RAB25 (ENSMLEG00000025037) #23	MEX3A (ENSMLEG00000023495) #24	LMNA (ENSMLEG00000030821) #25	SEMA4A (ENSMLEG00000033397) #26	ENSMLEG00000037790	SLC25A44 (ENSMLEG00000019841) #27	PMF1 (ENSMLEG00000032681) #28	BGLAP (ENSMLEG00000039620) #29	PAQR6 (ENSMLEG00000038853) #30	SMG5 (ENSMLEG00000041192) #31	TMEM79 (ENSMLEG00000038027)	GLMP (ENSMLEG00000038171) #33	ENSMLEG00000043471	CCT3 (ENSMLEG00000036583) #34	TSACC (ENSMLEG00000015946) #35
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00390000012642	ENSGT00900000141074.e.b.b.b #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000016256.l #14	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Cebidae	ANCESTRAL SPECIES	12	ENSGT00390000012642	ENSGT00900000141074.e.b.b.b #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000016256.l #14	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Marmoset	MODERN SPECIES	9	ASH1L (ENSCJAG00000008157) #12	ENSCJAG00000081873	MSTO1 (ENSCJAG00000008092) #13	YY1AP1 (ENSCJAG00000042285) #14	DAP3 (ENSCJAG00000008125)	ENSCJAG00000063148 #13	GON4L (ENSCJAG00000007977) #14	SYT11 (ENSCJAG00000043885) #15	ENSCJAG00000032919	RIT1 (ENSCJAG00000061243) #16	KHDC4 (ENSCJAG00000007881) #17	ENSCJAG00000007878	ARHGEF2 (ENSCJAG00000007846) #19	SSR2 (ENSCJAG00000046590) #20	UBQLN4 (ENSCJAG00000007755) #21	LAMTOR2 (ENSCJAG00000007739) #22	RAB25 (ENSCJAG00000007715) #23	MEX3A (ENSCJAG00000007711) #24	LMNA (ENSCJAG00000005413) #25	SEMA4A (ENSCJAG00000005605) #26	SLC25A44 (ENSCJAG00000005625) #27	ENSCJAG00000005636	BGLAP (ENSCJAG00000046802) #29	PAQR6 (ENSCJAG00000005656) #30	SMG5 (ENSCJAG00000005684) #31	TMEM79 (ENSCJAG00000005765)	GLMP (ENSCJAG00000005757) #33	ENSCJAG00000005776 #34	TSACC (ENSCJAG00000005831) #35	RHBG (ENSCJAG00000005838) #36	MEF2D (ENSCJAG00000005848) #37
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT00900000141074.e.b.b.a.a.a #10	ENSGT00390000012642	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000016256.l #14	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT01010000224083	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Capuchin	MODERN SPECIES	427					YY1AP1 (ENSCCAG00000026983) #14	DAP3 (ENSCCAG00000033532)	MSTO1 (ENSCCAG00000035498) #13	GON4L (ENSCCAG00000037108) #14	SYT11 (ENSCCAG00000016634) #15	RIT1 (ENSCCAG00000037656) #16	KHDC4 (ENSCCAG00000023017) #17	ARHGEF2 (ENSCCAG00000029636) #19	SSR2 (ENSCCAG00000037436) #20	ENSCCAG00000029510	UBQLN4 (ENSCCAG00000036689) #21	LAMTOR2 (ENSCCAG00000026308) #22	RAB25 (ENSCCAG00000021873) #23	MEX3A (ENSCCAG00000022351) #24	LMNA (ENSCCAG00000023432) #25	SEMA4A (ENSCCAG00000032806) #26	SLC25A44 (ENSCCAG00000026588) #27	PMF1 (ENSCCAG00000025850) #28	BGLAP (ENSCCAG00000020525) #29	PAQR6 (ENSCCAG00000027826) #30	SMG5 (ENSCCAG00000027409) #31	TMEM79 (ENSCCAG00000028389)	GLMP (ENSCCAG00000034620) #33	ENSCCAG00000011652	CCT3 (ENSCCAG00000033998) #34	TSACC (ENSCCAG00000022149) #35	RHBG (ENSCCAG00000029159) #36
Bolivian squirrel monkey	MODERN SPECIES	136	ENSSBOG00000020002 #10	ENSSBOG00000036252	RUSC1 (ENSSBOG00000020883) #11	ASH1L (ENSSBOG00000026764) #12	YY1AP1 (ENSSBOG00000029484) #14	DAP3 (ENSSBOG00000033972)	MSTO1 (ENSSBOG00000023864) #13	GON4L (ENSSBOG00000032520) #14	SYT11 (ENSSBOG00000035584) #15	RIT1 (ENSSBOG00000023350) #16	KHDC4 (ENSSBOG00000034469) #17	RXFP4 (ENSSBOG00000034710) #18	ARHGEF2 (ENSSBOG00000034006) #19	SSR2 (ENSSBOG00000020706) #20	UBQLN4 (ENSSBOG00000021728) #21	LAMTOR2 (ENSSBOG00000035732) #22	RAB25 (ENSSBOG00000032212) #23	MEX3A (ENSSBOG00000025317) #24	LMNA (ENSSBOG00000014857) #25	SEMA4A (ENSSBOG00000019443) #26	SLC25A44 (ENSSBOG00000020325) #27	PMF1 (ENSSBOG00000034025) #28	BGLAP (ENSSBOG00000026047) #29	PAQR6 (ENSSBOG00000036021) #30	SMG5 (ENSSBOG00000033339) #31	TMEM79 (ENSSBOG00000021483)	GLMP (ENSSBOG00000020411) #33	CCT3 (ENSSBOG00000035044) #34	TSACC (ENSSBOG00000020015) #35	RHBG (ENSSBOG00000035568) #36	ENSSBOG00000035567
Mas night monkey	MODERN SPECIES	1180	ASH1L (ENSANAG00000019337) #12	ENSANAG00000028010 #13	ENSANAG00000024232	YY1AP1 (ENSANAG00000022356) #14	DAP3 (ENSANAG00000033995)	ENSANAG00000035773 #13	ENSANAG00000026598	GON4L (ENSANAG00000036572) #14	ENSANAG00000006710	SYT11 (ENSANAG00000020380) #15	RIT1 (ENSANAG00000033671) #16	ENSANAG00000034289 #17	ARHGEF2 (ENSANAG00000038394) #19	SSR2 (ENSANAG00000024178) #20	UBQLN4 (ENSANAG00000031889) #21	LAMTOR2 (ENSANAG00000036124) #22	RAB25 (ENSANAG00000036045) #23	MEX3A (ENSANAG00000032597) #24	LMNA (ENSANAG00000028703) #25	SEMA4A (ENSANAG00000032935) #26	SLC25A44 (ENSANAG00000033058) #27	ENSANAG00000028929	BGLAP (ENSANAG00000034859) #29	PAQR6 (ENSANAG00000023514) #30	SMG5 (ENSANAG00000032899) #31	TMEM79 (ENSANAG00000028444)	GLMP (ENSANAG00000020224) #33	ENSANAG00000026737	CCT3 (ENSANAG00000036513) #34	TSACC (ENSANAG00000036292) #35	RHBG (ENSANAG00000024190) #36
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Carnivora	ANCESTRAL SPECIES	14	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Caniformia	ANCESTRAL SPECIES	10	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Red fox	MODERN SPECIES	23	CLK2 (ENSVVUG00000003884) #7	HCN3 (ENSVVUG00000003915) #8	PKLR (ENSVVUG00000003930) #9	FDPS (ENSVVUG00000004041) #10	RUSC1 (ENSVVUG00000004055) #11	ASH1L (ENSVVUG00000004069) #12	DAP3 (ENSVVUG00000004090)	MSTO1 (ENSVVUG00000004113) #13	ENSVVUG00000004239 #14	SYT11 (ENSVVUG00000005667) #15	RIT1 (ENSVVUG00000005671) #16	KHDC4 (ENSVVUG00000005679) #17	ARHGEF2 (ENSVVUG00000005746) #19	SSR2 (ENSVVUG00000005756) #20	UBQLN4 (ENSVVUG00000005763) #21	LAMTOR2 (ENSVVUG00000005816) #22	RAB25 (ENSVVUG00000005821) #23	MEX3A (ENSVVUG00000005834) #24	LMNA (ENSVVUG00000005843) #25	ENSVVUG00000005853 #26	ENSVVUG00000005856 #26	SLC25A44 (ENSVVUG00000005863) #27	ENSVVUG00000005870	BGLAP (ENSVVUG00000005877) #29	PAQR6 (ENSVVUG00000005883) #30	SMG5 (ENSVVUG00000005887) #31	TMEM79 (ENSVVUG00000005892)	GLMP (ENSVVUG00000005893) #33	CCT3 (ENSVVUG00000005916) #34	ENSVVUG00000005925 #35	RHBG (ENSVVUG00000005930) #36
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Dog	MODERN SPECIES	35	CLK2 (ENSCAFG00845012282) #7	HCN3 (ENSCAFG00845012249) #8	PKLR (ENSCAFG00845012059) #9	FDPS (ENSCAFG00845011910) #10	RUSC1 (ENSCAFG00845011825) #11	ASH1L (ENSCAFG00845011740) #12	DAP3 (ENSCAFG00845011528)	MSTO1 (ENSCAFG00845011422) #13	ENSCAFG00845011319 #14	SYT11 (ENSCAFG00845011235) #15	RIT1 (ENSCAFG00845011170) #16	KHDC4 (ENSCAFG00845011090) #17	ARHGEF2 (ENSCAFG00845010726) #19	SSR2 (ENSCAFG00845010530) #20	UBQLN4 (ENSCAFG00845010456) #21	LAMTOR2 (ENSCAFG00845010372) #22	RAB25 (ENSCAFG00845010319) #23	MEX3A (ENSCAFG00845010291) #24	LMNA (ENSCAFG00845010163) #25	SEMA4A (ENSCAFG00845010023) #26	SLC25A44 (ENSCAFG00845009963) #27	BGLAP (ENSCAFG00845009909) #29	SMG5 (ENSCAFG00845009772) #31	PAQR6 (ENSCAFG00845009665) #30	TMEM79 (ENSCAFG00845009619)	GLMP (ENSCAFG00845009558) #33	CCT3 (ENSCAFG00845009435) #34	RHBG (ENSCAFG00845009336) #36	MEF2D (ENSCAFG00845009027) #37	IQGAP3 (ENSCAFG00845008852)	ENSCAFG00845008793
Dingo	MODERN SPECIES	271	CLK2 (ENSCAFG00020007098) #7	HCN3 (ENSCAFG00020007064) #8	PKLR (ENSCAFG00020006996) #9	FDPS (ENSCAFG00020006959) #10	ENSCAFG00020006949 #11	ASH1L (ENSCAFG00020006713) #12	DAP3 (ENSCAFG00020006662)	MSTO1 (ENSCAFG00020006658) #13	ENSCAFG00020006650 #14	SYT11 (ENSCAFG00020006484) #15	RIT1 (ENSCAFG00020006481) #16	KHDC4 (ENSCAFG00020006317) #17	ARHGEF2 (ENSCAFG00020006291) #19	SSR2 (ENSCAFG00020006268) #20	UBQLN4 (ENSCAFG00020006198) #21	ENSCAFG00020006183 #22	RAB25 (ENSCAFG00020006179) #23	MEX3A (ENSCAFG00020006171) #24	LMNA (ENSCAFG00020006147) #25	SEMA4A (ENSCAFG00020006101) #26	SLC25A44 (ENSCAFG00020006099) #27	ENSCAFG00020006096	BGLAP (ENSCAFG00020006091) #29	PAQR6 (ENSCAFG00020006075) #30	SMG5 (ENSCAFG00020006061) #31	TMEM79 (ENSCAFG00020006056)	GLMP (ENSCAFG00020006053) #33	CCT3 (ENSCAFG00020005487) #34	TSACC (ENSCAFG00020005438) #35	RHBG (ENSCAFG00020005431) #36	MEF2D (ENSCAFG00020005413) #37
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Ursidae	ANCESTRAL SPECIES	4	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074.p #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.f #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125.d #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Ursus	ANCESTRAL SPECIES	72	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074.p #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.f #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125.d #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22
American black bear	MODERN SPECIES	23						DAP3 (ENSUAMG00000013808)	ENSUAMG00000013824 #14	ENSUAMG00000013828 #14	ENSUAMG00000013830 #14	SYT11 (ENSUAMG00000013841) #15	RIT1 (ENSUAMG00000013852) #16	KHDC4 (ENSUAMG00000013863) #17	ARHGEF2 (ENSUAMG00000013991) #19	SSR2 (ENSUAMG00000015694) #20	UBQLN4 (ENSUAMG00000015695) #21	ENSUAMG00000015696 #22
Giant Panda	MODERN SPECIES	18	SCAMP3 (ENSAMEG00000024431)	CLK2 (ENSAMEG00000000065) #7	HCN3 (ENSAMEG00000000063) #8	PKLR (ENSAMEG00000000055) #9	FDPS (ENSAMEG00000000050) #10	ENSAMEG00000026390 #11	ASH1L (ENSAMEG00000000049) #12	DAP3 (ENSAMEG00000000047)	MSTO1 (ENSAMEG00000000045) #13	ENSAMEG00000000043 #14	SYT11 (ENSAMEG00000000041) #15	RIT1 (ENSAMEG00000000040) #16	KHDC4 (ENSAMEG00000000037) #17	ARHGEF2 (ENSAMEG00000000035) #19	SSR2 (ENSAMEG00000014198) #20	ENSAMEG00000028885 #22	RAB25 (ENSAMEG00000014249) #23	MEX3A (ENSAMEG00000014265) #24	LMNA (ENSAMEG00000014270) #25	SEMA4A (ENSAMEG00000014336) #26	SLC25A44 (ENSAMEG00000014397) #27	PMF1 (ENSAMEG00000014403) #28	BGLAP (ENSAMEG00000014417) #29	PAQR6 (ENSAMEG00000014419) #30	SMG5 (ENSAMEG00000014458) #31	TMEM79 (ENSAMEG00000014512)	GLMP (ENSAMEG00000014517) #33	CCT3 (ENSAMEG00000014524) #34	TSACC (ENSAMEG00000025844) #35	RHBG (ENSAMEG00000014562) #36	MEF2D (ENSAMEG00000014630) #37
Mustelinae	ANCESTRAL SPECIES	23	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074.m #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Ferret	MODERN SPECIES	441	CLK2 (ENSMPUG00000005543) #7	HCN3 (ENSMPUG00000005526) #8	PKLR (ENSMPUG00000005509) #9	ENSMPUG00000005496 #10	ENSMPUG00000005484 #11	ASH1L (ENSMPUG00000005465) #12	DAP3 (ENSMPUG00000005314)	MSTO1 (ENSMPUG00000005298) #13	ENSMPUG00000005274 #14	SYT11 (ENSMPUG00000005268) #15	RIT1 (ENSMPUG00000005245) #16	KHDC4 (ENSMPUG00000005186) #17	ARHGEF2 (ENSMPUG00000005016) #19	SSR2 (ENSMPUG00000004963) #20	UBQLN4 (ENSMPUG00000004855) #21	LAMTOR2 (ENSMPUG00000004826) #22	RAB25 (ENSMPUG00000004790) #23	MEX3A (ENSMPUG00000004774) #24	LMNA (ENSMPUG00000004761) #25	SEMA4A (ENSMPUG00000004742) #26	SLC25A44 (ENSMPUG00000004717) #27	PMF1 (ENSMPUG00000004672) #28	BGLAP (ENSMPUG00000004628) #29	PAQR6 (ENSMPUG00000004566) #30	SMG5 (ENSMPUG00000004546) #31	TMEM79 (ENSMPUG00000004531)	GLMP (ENSMPUG00000004537) #33	CCT3 (ENSMPUG00000004401) #34	TSACC (ENSMPUG00000004391) #35	RHBG (ENSMPUG00000004385) #36	ENSMPUG00000018432
American mink	MODERN SPECIES	260	CLK2 (ENSNVIG00000019445) #7	HCN3 (ENSNVIG00000019481) #8	PKLR (ENSNVIG00000019507) #9	FDPS (ENSNVIG00000019613) #10	ENSNVIG00000019622 ##11	ASH1L (ENSNVIG00000019642) #12	DAP3 (ENSNVIG00000019822)	MSTO1 (ENSNVIG00000019933) #13	ENSNVIG00000019964 #14	SYT11 (ENSNVIG00000020257) #15	RIT1 (ENSNVIG00000020272) #16	ENSNVIG00000020342 #17	ARHGEF2 (ENSNVIG00000020356) #19	SSR2 (ENSNVIG00000020385) #20	UBQLN4 (ENSNVIG00000020416) #21	LAMTOR2 (ENSNVIG00000020427) #22	RAB25 (ENSNVIG00000020433) #23	LMNA (ENSNVIG00000020473) #25	SEMA4A (ENSNVIG00000020558) #26	SLC25A44 (ENSNVIG00000020603) #27	ENSNVIG00000020609	BGLAP (ENSNVIG00000020619) #29	ENSNVIG00000020635 #30	SMG5 (ENSNVIG00000020654) #31	ENSNVIG00000020679 #32	GLMP (ENSNVIG00000020700) #33	CCT3 (ENSNVIG00000020748) #34	TSACC (ENSNVIG00000020774) #35	RHBG (ENSNVIG00000020780) #36	ENSNVIG00000020791 #37	IQGAP3 (ENSNVIG00000020810)
Felidae	ANCESTRAL SPECIES	11	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Cat	MODERN SPECIES	248	ENSFCAG00000047278	FDPS (ENSFCAG00000039350) #10	RUSC1 (ENSFCAG00000024900) #11	ASH1L (ENSFCAG00000012088) #12	DAP3 (ENSFCAG00000022787)	MSTO1 (ENSFCAG00000030966) #13	ENSFCAG00000012133 #14	SYT11 (ENSFCAG00000029675) #15	ENSFCAG00000037260 #16	RIT1 (ENSFCAG00000044860) #16	KHDC4 (ENSFCAG00000012137) #17	ARHGEF2 (ENSFCAG00000030294) #19	SSR2 (ENSFCAG00000043703) #20	ENSFCAG00000050566	UBQLN4 (ENSFCAG00000011772) #21	LAMTOR2 (ENSFCAG00000028596) #22	RAB25 (ENSFCAG00000011775) #23	MEX3A (ENSFCAG00000044236) #24	LMNA (ENSFCAG00000011776) #25	SEMA4A (ENSFCAG00000011779) #26	SLC25A44 (ENSFCAG00000011780) #27	PMF1 (ENSFCAG00000011781) #28	BGLAP (ENSFCAG00000048978) #29	PAQR6 (ENSFCAG00000000759) #30	SMG5 (ENSFCAG00000011783) #31	TMEM79 (ENSFCAG00000011787)	GLMP (ENSFCAG00000011788) #33	CCT3 (ENSFCAG00000011789) #34	TSACC (ENSFCAG00000029523) #35	RHBG (ENSFCAG00000011790) #36	MEF2D (ENSFCAG00000024020) #37
Panthera	ANCESTRAL SPECIES	38	ENSGT00940000160917	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Tiger	MODERN SPECIES	274	ENSPTIG00000013508	SCAMP3 (ENSPTIG00000011445)	CLK2 (ENSPTIG00000010873) #7	HCN3 (ENSPTIG00000009244) #8	ENSPTIG00000008406 #10	ASH1L (ENSPTIG00000019713) #12	DAP3 (ENSPTIG00000015443)	ENSPTIG00000013227 #14	ENSPTIG00000007985 #14	SYT11 (ENSPTIG00000007723) #15	RIT1 (ENSPTIG00000007045) #16	KHDC4 (ENSPTIG00000004498) #17	ENSPTIG00000001215 #19	SSR2 (ENSPTIG00000022102) #20	UBQLN4 (ENSPTIG00000022083) #21	LAMTOR2 (ENSPTIG00000022068) #22	RAB25 (ENSPTIG00000022049) #23	ENSPTIG00000021888 #25	SEMA4A (ENSPTIG00000016788) #26	SLC25A44 (ENSPTIG00000011099) #27	SMG5 (ENSPTIG00000007892) #31	TMEM79 (ENSPTIG00000007414)	GLMP (ENSPTIG00000004054) #33	CCT3 (ENSPTIG00000018610) #34	TSACC (ENSPTIG00000016816) #35	RHBG (ENSPTIG00000015826) #36	IQGAP3 (ENSPTIG00000013068)	TTC24 (ENSPTIG00000010925)	NAXE (ENSPTIG00000009667)	GPATCH4 (ENSPTIG00000006717)	ENSPTIG00000006345
Panthera_a	ANCESTRAL SPECIES	37	ENSGT00940000160917	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
leopard	MODERN SPECIES	138	CLK2 (ENSPPRG00000023511) #7	HCN3 (ENSPPRG00000021359) #8	PKLR (ENSPPRG00000019731) #9	FDPS (ENSPPRG00000017484) #10	ENSPPRG00000015592 #11	ASH1L (ENSPPRG00000014648) #12	ENSPPRG00000011971	DAP3 (ENSPPRG00000011800)	ENSPPRG00000008799 #14	SYT11 (ENSPPRG00000000652) #15	RIT1 (ENSPPRG00000000399) #16	KHDC4 (ENSPPRG00000021149) #17	ARHGEF2 (ENSPPRG00000018064) #19	SSR2 (ENSPPRG00000009542) #20	UBQLN4 (ENSPPRG00000008090) #21	LAMTOR2 (ENSPPRG00000007518) #22	RAB25 (ENSPPRG00000006611) #23	MEX3A (ENSPPRG00000006585) #24	LMNA (ENSPPRG00000003442) #25	SEMA4A (ENSPPRG00000024539) #26	ENSPPRG00000017448 #27	ENSPPRG00000016604 #27	ENSPPRG00000015181	BGLAP (ENSPPRG00000013703) #29	PAQR6 (ENSPPRG00000013590) #30	ENSPPRG00000012440 #30	SMG5 (ENSPPRG00000011901) #31	TMEM79 (ENSPPRG00000011226)	GLMP (ENSPPRG00000010044) #33	CCT3 (ENSPPRG00000008924) #34	TSACC (ENSPPRG00000007969) #35
lion	MODERN SPECIES	44	SCAMP3 (ENSPLOG00000009300)	CLK2 (ENSPLOG00000008926) #7	HCN3 (ENSPLOG00000008852) #8	PKLR (ENSPLOG00000008753) #9	FDPS (ENSPLOG00000008651) #10	RUSC1 (ENSPLOG00000008579) #11	ASH1L (ENSPLOG00000008458) #12	ENSPLOG00000008379	ENSPLOG00000008203 #14	SYT11 (ENSPLOG00000008151) #15	RIT1 (ENSPLOG00000008053) #16	KHDC4 (ENSPLOG00000007865) #17	ARHGEF2 (ENSPLOG00000007611) #19	SSR2 (ENSPLOG00000007527) #20	UBQLN4 (ENSPLOG00000007496) #21	LAMTOR2 (ENSPLOG00000007417) #22	RAB25 (ENSPLOG00000007385) #23	MEX3A (ENSPLOG00000007367) #24	LMNA (ENSPLOG00000007050) #25	SEMA4A (ENSPLOG00000006968) #26	SLC25A44 (ENSPLOG00000006937) #27	ENSPLOG00000006903	BGLAP (ENSPLOG00000006890) #29	PAQR6 (ENSPLOG00000006831) #30	SMG5 (ENSPLOG00000006798) #31	ENSPLOG00000006758 #32	GLMP (ENSPLOG00000006693) #33	CCT3 (ENSPLOG00000006587) #34	TSACC (ENSPLOG00000006484) #35	RHBG (ENSPLOG00000006433) #36	MEF2D (ENSPLOG00000006383) #37
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Equus	ANCESTRAL SPECIES	3	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Horse	MODERN SPECIES	26	HCN3 (ENSECAG00000019972) #8	PKLR (ENSECAG00000013836) #9	FDPS (ENSECAG00000039158) #10	RUSC1 (ENSECAG00000023262) #11	ASH1L (ENSECAG00000018527) #12	ENSECAG00000049880	DAP3 (ENSECAG00000016401)	MSTO1 (ENSECAG00000008798) #13	SYT11 (ENSECAG00000019725) #15	ENSECAG00000019775 #14	RIT1 (ENSECAG00000015714) #16	KHDC4 (ENSECAG00000011569) #17	ARHGEF2 (ENSECAG00000013759) #19	SSR2 (ENSECAG00000013740) #20	UBQLN4 (ENSECAG00000009993) #21	LAMTOR2 (ENSECAG00000009193) #22	RAB25 (ENSECAG00000023191) #23	MEX3A (ENSECAG00000007279) #24	LMNA (ENSECAG00000011097) #25	SEMA4A (ENSECAG00000008622) #26	SLC25A44 (ENSECAG00000007577) #27	ENSECAG00000005938	SMG5 (ENSECAG00000001389) #31	TMEM79 (ENSECAG00000001165)	GLMP (ENSECAG00000024928) #33	CCT3 (ENSECAG00000020633) #34	TSACC (ENSECAG00000020624) #35	RHBG (ENSECAG00000013494) #36	MEF2D (ENSECAG00000020356) #37	ENSECAG00000053296	IQGAP3 (ENSECAG00000020111)
Donkey	MODERN SPECIES	17	ENSEASG00005019246 #10	ENSEASG00005030134	ENSEASG00005010486	ENSEASG00005010484	ENSEASG00005019185 #12	ENSEASG00005024932	DAP3 (ENSEASG00005019165)	ENSEASG00005019163 #13	ENSEASG00005019154 #14	SYT11 (ENSEASG00005019151) #15	RIT1 (ENSEASG00005019149) #16	KHDC4 (ENSEASG00005019143) #17	ARHGEF2 (ENSEASG00005019138) #19	SSR2 (ENSEASG00005019136) #20	UBQLN4 (ENSEASG00005019135) #21	LAMTOR2 (ENSEASG00005031172) #22	RAB25 (ENSEASG00005019133) #23	MEX3A (ENSEASG00005031469) #24	LMNA (ENSEASG00005019130) #25	SEMA4A (ENSEASG00005019129) #26	SLC25A44 (ENSEASG00005019128) #27	ENSEASG00005019127 #29	PAQR6 (ENSEASG00005019125) #30	SMG5 (ENSEASG00005019122) #31	TMEM79 (ENSEASG00005019119)	GLMP (ENSEASG00005019116) #33	CCT3 (ENSEASG00005019113) #34	TSACC (ENSEASG00005019110) #35	RHBG (ENSEASG00005019109) #36	MEF2D (ENSEASG00005019100) #37	IQGAP3 (ENSEASG00005018530)
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Megabat	MODERN SPECIES	3199							ENSPVAG00000010316	ENSPVAG00000010318 #14	SYT11 (ENSPVAG00000010320) #15	RIT1 (ENSPVAG00000010321) #16	KHDC4 (ENSPVAG00000010322) #17	RXFP4 (ENSPVAG00000010323) #18	ARHGEF2 (ENSPVAG00000010324) #19	SSR2 (ENSPVAG00000010325) #20	UBQLN4 (ENSPVAG00000010326) #21	LAMTOR2 (ENSPVAG00000010328) #22	RAB25 (ENSPVAG00000010331) #23	MEX3A (ENSPVAG00000010333) #24
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Microbat	DUPLICATION
Microbat	MODERN SPECIES	937	TMEM232 (ENSMLUG00000009460)	ENSMLUG00000026846	MAN2A1 (ENSMLUG00000013107)	PJA2 (ENSMLUG00000011060)	ENSMLUG00000028567	ENSMLUG00000011004	ENSMLUG00000000367	ENSMLUG00000025300	ENSMLUG00000028326	EFNA5 (ENSMLUG00000009930)	NUDT12 (ENSMLUG00000014521)	ENSMLUG00000026844	ENSMLUG00000025570	MACIR (ENSMLUG00000000868)	PPIP5K2 (ENSMLUG00000000847)	ENSMLUG00000024588 #22	GIN1 (ENSMLUG00000025218)	PAM (ENSMLUG00000000826)	ENSMLUG00000003988	SLCO4C1 (ENSMLUG00000001943)	ST8SIA4 (ENSMLUG00000016346)	FAM174A (ENSMLUG00000009103)	CHD1 (ENSMLUG00000016014)	RGMB (ENSMLUG00000000422)	ENSMLUG00000027844	ENSMLUG00000023104	RIOK2 (ENSMLUG00000016113)	LIX1 (ENSMLUG00000016110)	LNPEP (ENSMLUG00000016096)	ERAP2 (ENSMLUG00000016082)	ERAP1 (ENSMLUG00000016064)
Microbat	MODERN SPECIES	1148	CLK2 (ENSMLUG00000013410) #7	HCN3 (ENSMLUG00000013418) #8	PKLR (ENSMLUG00000013422) #9	RUSC1 (ENSMLUG00000013446) #11	ASH1L (ENSMLUG00000013461) #12	DAP3 (ENSMLUG00000005848)	MSTO1 (ENSMLUG00000009855) #13	ENSMLUG00000009868 #14	SYT11 (ENSMLUG00000009918) #15	RIT1 (ENSMLUG00000009935) #16	KHDC4 (ENSMLUG00000009967) #17	RXFP4 (ENSMLUG00000010023) #18	ARHGEF2 (ENSMLUG00000010039) #19	SSR2 (ENSMLUG00000010102) #20	UBQLN4 (ENSMLUG00000010131) #21	ENSMLUG00000023871 #22	RAB25 (ENSMLUG00000010153) #23	MEX3A (ENSMLUG00000010185) #24	LMNA (ENSMLUG00000026412) #25	SEMA4A (ENSMLUG00000000639) #26	SLC25A44 (ENSMLUG00000008481) #27	PMF1 (ENSMLUG00000008489) #28	BGLAP (ENSMLUG00000029723) #29	PAQR6 (ENSMLUG00000008500) #30	SMG5 (ENSMLUG00000008518) #31	TMEM79 (ENSMLUG00000008551)	GLMP (ENSMLUG00000008556) #33	CCT3 (ENSMLUG00000015678) #34	RHBG (ENSMLUG00000008585) #36	ENSMLUG00000030150	ENSMLUG00000029510
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	24	ENSRFEG00010014210	ENSRFEG00010014135	ENSRFEG00010014112	ENSRFEG00010014071	NRXN3 (ENSRFEG00010013015)	ENSRFEG00010012930	CEP128 (ENSRFEG00010012759)	TSHR (ENSRFEG00010012154)	GTF2A1 (ENSRFEG00010012049)	ENSRFEG00010011999	STON2 (ENSRFEG00010011966)	SEL1L (ENSRFEG00010011889)	ENSRFEG00010011871	ENSRFEG00010011830	FLRT2 (ENSRFEG00010011812)	ENSRFEG00010011765 #22	GALC (ENSRFEG00010011294)	GPR65 (ENSRFEG00010011274)	ENSRFEG00010011219	KCNK10 (ENSRFEG00010011135)	ENSRFEG00010011077	SPATA7 (ENSRFEG00010010944)	PTPN21 (ENSRFEG00010010878)	ZC3H14 (ENSRFEG00010010356)	EML5 (ENSRFEG00010010199)	TTC8 (ENSRFEG00010009898)	FOXN3 (ENSRFEG00010009812)	EFCAB11 (ENSRFEG00010009733)	TDP1 (ENSRFEG00010009605)	ENSRFEG00010009545	NRDE2 (ENSRFEG00010009498)
Greater horseshoe bat	MODERN SPECIES	14	HCN3 (ENSRFEG00010012686) #8	PKLR (ENSRFEG00010012731) #9	FDPS (ENSRFEG00010012958) #10	RUSC1 (ENSRFEG00010013073) #11	ASH1L (ENSRFEG00010013223) #12	DAP3 (ENSRFEG00010013351)	MSTO1 (ENSRFEG00010013673) #13	ENSRFEG00010013759 #14	SYT11 (ENSRFEG00010014057) #15	RIT1 (ENSRFEG00010014140) #16	KHDC4 (ENSRFEG00010014273) #17	RXFP4 (ENSRFEG00010014369) #18	ARHGEF2 (ENSRFEG00010014408) #19	SSR2 (ENSRFEG00010014692) #20	UBQLN4 (ENSRFEG00010014900) #21	ENSRFEG00010014949 #22	RAB25 (ENSRFEG00010015038) #23	MEX3A (ENSRFEG00010015157) #24	LMNA (ENSRFEG00010015236) #25	SEMA4A (ENSRFEG00010015377) #26	SLC25A44 (ENSRFEG00010015502) #27	PMF1 (ENSRFEG00010015555) #28	BGLAP (ENSRFEG00010015652) #29	PAQR6 (ENSRFEG00010015723) #30	SMG5 (ENSRFEG00010015872) #31	TMEM79 (ENSRFEG00010015938)	GLMP (ENSRFEG00010016041) #33	CCT3 (ENSRFEG00010010707) #34	TSACC (ENSRFEG00010010848) #35	RHBG (ENSRFEG00010010915) #36	MEF2D (ENSRFEG00010010994) #37
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Suina	ANCESTRAL SPECIES	8	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00980000200110 #32	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Pig	MODERN SPECIES	12	PKLR (ENSSSCG00000026149) #9	FDPS (ENSSSCG00000006512) #10	RUSC1 (ENSSSCG00000006511) #11	ENSSSCG00000040632	ASH1L (ENSSSCG00000006508) #12	DAP3 (ENSSSCG00000006507)	MSTO1 (ENSSSCG00000006157) #13	ENSSSCG00000006510 #14	SYT11 (ENSSSCG00000006506) #15	RIT1 (ENSSSCG00000023991) #16	KHDC4 (ENSSSCG00000006504) #17	RXFP4 (ENSSSCG00000006503) #18	ARHGEF2 (ENSSSCG00000006502) #19	SSR2 (ENSSSCG00000006501) #20	UBQLN4 (ENSSSCG00000006500) #21	LAMTOR2 (ENSSSCG00000006499) #22	RAB25 (ENSSSCG00000039186) #23	MEX3A (ENSSSCG00000006497) #24	LMNA (ENSSSCG00000006496) #25	SEMA4A (ENSSSCG00000006495) #26	SLC25A44 (ENSSSCG00000006494) #27	PMF1 (ENSSSCG00000052919)	BGLAP (ENSSSCG00000055767) #29	PAQR6 (ENSSSCG00000006491) #30	SMG5 (ENSSSCG00000006490) #31	TMEM79 (ENSSSCG00000006489)	GLMP (ENSSSCG00000006488) #33	CCT3 (ENSSSCG00000006487) #34	TSACC (ENSSSCG00000006486) #35	RHBG (ENSSSCG00000035121) #36	MEF2D (ENSSSCG00000006482) #37
Chacoan peccary	MODERN SPECIES	139	PKLR (ENSCWAG00000020577) #9	FDPS (ENSCWAG00000020618) #10	RUSC1 (ENSCWAG00000020663) #11	ASH1L (ENSCWAG00000020727) #12	ENSCWAG00000020755	DAP3 (ENSCWAG00000020775)	MSTO1 (ENSCWAG00000020845) #13	ENSCWAG00000020896 #14	SYT11 (ENSCWAG00000020979) #15	RIT1 (ENSCWAG00000020995) #16	KHDC4 (ENSCWAG00000007841) #17	ENSCWAG00000007912	ARHGEF2 (ENSCWAG00000007966) #19	SSR2 (ENSCWAG00000008262) #20	UBQLN4 (ENSCWAG00000008403) #21	LAMTOR2 (ENSCWAG00000008520) #22	RAB25 (ENSCWAG00000008570) #23	MEX3A (ENSCWAG00000008643) #24	LMNA (ENSCWAG00000008705) #25	SEMA4A (ENSCWAG00000009047) #26	SLC25A44 (ENSCWAG00000009427) #27	ENSCWAG00000009485	BGLAP (ENSCWAG00000009559) #29	PAQR6 (ENSCWAG00000009611) #30	SMG5 (ENSCWAG00000009746) #31	ENSCWAG00000009845 #32	GLMP (ENSCWAG00000009920) #33	CCT3 (ENSCWAG00000010037) #34	TSACC (ENSCWAG00000010146) #35	RHBG (ENSCWAG00000010166) #36	MEF2D (ENSCWAG00000010285) #37
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Camelidae	ANCESTRAL SPECIES	6	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b
Arabian camel	MODERN SPECIES	13	FDPS (ENSCDRG00005008269) #10	RUSC1 (ENSCDRG00005008367) #11	ASH1L (ENSCDRG00005008672) #12	ENSCDRG00005008918	DAP3 (ENSCDRG00005008986)	ENSCDRG00005009290 #14	ENSCDRG00005009473 #14	MSTO1 (ENSCDRG00005009513) #13	SYT11 (ENSCDRG00005009687) #15	RIT1 (ENSCDRG00005009734) #16	ENSCDRG00005009887	RXFP4 (ENSCDRG00005009989) #18	ARHGEF2 (ENSCDRG00005010064) #19	SSR2 (ENSCDRG00005010971) #20	UBQLN4 (ENSCDRG00005011159) #21	LAMTOR2 (ENSCDRG00005011283) #22	RAB25 (ENSCDRG00005011364) #23	MEX3A (ENSCDRG00005011401) #24	LMNA (ENSCDRG00005011469) #25	SEMA4A (ENSCDRG00005011665) #26	SLC25A44 (ENSCDRG00005011792) #27	BGLAP (ENSCDRG00005011888) #29	PAQR6 (ENSCDRG00005011936) #30	SMG5 (ENSCDRG00005012076) #31	TMEM79 (ENSCDRG00005012417)	GLMP (ENSCDRG00005012477) #33	CCT3 (ENSCDRG00005012596) #34	TSACC (ENSCDRG00005012775) #35	RHBG (ENSCDRG00005012851) #36	MEF2D (ENSCDRG00005012987) #37	IQGAP3 (ENSCDRG00005013249)
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.i.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Yarkand deer	MODERN SPECIES	12	CLK2 (ENSCHYG00000004875) #7	HCN3 (ENSCHYG00000004855) #8	PKLR (ENSCHYG00000004833) #9	FDPS (ENSCHYG00000026456) #10	RUSC1 (ENSCHYG00000026489) #11	ASH1L (ENSCHYG00000026415) #12	ENSCHYG00000026325	MSTO1 (ENSCHYG00000026231) #13	SYT11 (ENSCHYG00000026203) #15	RIT1 (ENSCHYG00000026149) #16	KHDC4 (ENSCHYG00000025994) #17	ENSCHYG00000025955	ARHGEF2 (ENSCHYG00000025091) #19	SSR2 (ENSCHYG00000024941) #20	UBQLN4 (ENSCHYG00000024829) #21	ENSCHYG00000024792 #22	RAB25 (ENSCHYG00000024758) #23	MEX3A (ENSCHYG00000024742) #24	LMNA (ENSCHYG00000024365) #25	SEMA4A (ENSCHYG00000024199) #26	SLC25A44 (ENSCHYG00000024104) #27	ENSCHYG00000024011	ENSCHYG00000023870 #30	SMG5 (ENSCHYG00000023680) #31	TMEM79 (ENSCHYG00000023640)	GLMP (ENSCHYG00000023522) #33	CCT3 (ENSCHYG00000023340) #34	TSACC (ENSCHYG00000023310) #35	RHBG (ENSCHYG00000023227) #36	MEF2D (ENSCHYG00000022984) #37	IQGAP3 (ENSCHYG00000022712)
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.i.a.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Siberian musk deer	MODERN SPECIES	1202	PKLR (ENSMMSG00000007243) #9	FDPS (ENSMMSG00000007131) #10	RUSC1 (ENSMMSG00000007079) #11	ASH1L (ENSMMSG00000006966) #12	DAP3 (ENSMMSG00000006783)	MSTO1 (ENSMMSG00000006647) #13	ENSMMSG00000006603 #14	ENSMMSG00000005075 #14	SYT11 (ENSMMSG00000004948) #15	RIT1 (ENSMMSG00000004820) #16	KHDC4 (ENSMMSG00000022609) #17	RXFP4 (ENSMMSG00000022594) #18	ARHGEF2 (ENSMMSG00000022532) #19	SSR2 (ENSMMSG00000022486) #20	UBQLN4 (ENSMMSG00000022457) #21	LAMTOR2 (ENSMMSG00000022447) #22	RAB25 (ENSMMSG00000022435) #23	MEX3A (ENSMMSG00000022428) #24	LMNA (ENSMMSG00000022290) #25	ENSMMSG00000022232	SEMA4A (ENSMMSG00000022204) #26	SLC25A44 (ENSMMSG00000022189) #27	PMF1 (ENSMMSG00000022165) #28	BGLAP (ENSMMSG00000022141) #29	PAQR6 (ENSMMSG00000022081) #30	SMG5 (ENSMMSG00000022024) #31	TMEM79 (ENSMMSG00000022007)	GLMP (ENSMMSG00000021977) #33	CCT3 (ENSMMSG00000021905) #34	TSACC (ENSMMSG00000021888) #35	RHBG (ENSMMSG00000021854) #36
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.i.a.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.i.a.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Rambouillet Sheep	MODERN SPECIES		ASH1L (ENSOARG00020012553) #12	ENSOARG00020012690	DAP3 (ENSOARG00020012723)	MSTO1 (ENSOARG00020013057) #13	ENSOARG00020013143 #14	ENSOARG00020013192 #14	ENSOARG00020013774 #14	SYT11 (ENSOARG00020013872) #15	RIT1 (ENSOARG00020013942) #16	KHDC4 (ENSOARG00020014119) #17	RXFP4 (ENSOARG00020014277) #18	ARHGEF2 (ENSOARG00020014346) #19	SSR2 (ENSOARG00020015600) #20	ENSOARG00020015739	UBQLN4 (ENSOARG00020015789) #21	LAMTOR2 (ENSOARG00020015838) #22	RAB25 (ENSOARG00020015913) #23	MEX3A (ENSOARG00020015946) #24	LMNA (ENSOARG00020016018) #25	SEMA4A (ENSOARG00020016412) #26	SLC25A44 (ENSOARG00020016505) #27	PMF1 (ENSOARG00020016596) #28	BGLAP (ENSOARG00020016735) #29	PAQR6 (ENSOARG00020016793) #30	SMG5 (ENSOARG00020016889) #31	TMEM79 (ENSOARG00020017071)	GLMP (ENSOARG00020017115) #33	CCT3 (ENSOARG00020017271) #34	TSACC (ENSOARG00020017382) #35	RHBG (ENSOARG00020017414) #36	MEF2D (ENSOARG00020017561) #37
Goat	MODERN SPECIES	22	FDPS (ENSCHIG00000020170) #10	RUSC1 (ENSCHIG00000014020) #11	ASH1L (ENSCHIG00000026354) #12	DAP3 (ENSCHIG00000017638)	MSTO1 (ENSCHIG00000027233) #13	ENSCHIG00000021776 #14	ENSCHIG00000011207 #14	ENSCHIG00000025192 #14	SYT11 (ENSCHIG00000021455) #15	RIT1 (ENSCHIG00000010506) #16	KHDC4 (ENSCHIG00000022965) #17	ENSCHIG00000012796	ARHGEF2 (ENSCHIG00000018812) #19	SSR2 (ENSCHIG00000027199) #20	UBQLN4 (ENSCHIG00000015053) #21	LAMTOR2 (ENSCHIG00000026461) #22	RAB25 (ENSCHIG00000018911) #23	MEX3A (ENSCHIG00000012770) #24	LMNA (ENSCHIG00000022777) #25	SEMA4A (ENSCHIG00000022763) #26	SLC25A44 (ENSCHIG00000011510) #27	ENSCHIG00000025721	BGLAP (ENSCHIG00000025718) #29	PAQR6 (ENSCHIG00000019473) #30	SMG5 (ENSCHIG00000007709) #31	TMEM79 (ENSCHIG00000024223)	GLMP (ENSCHIG00000018226) #33	CCT3 (ENSCHIG00000011665) #34	TSACC (ENSCHIG00000008701) #35	RHBG (ENSCHIG00000018535) #36	MEF2D (ENSCHIG00000010363) #37
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.i.a.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
American bison	MODERN SPECIES	3022	FDPS (ENSBBBG00000014941) #10	ENSBBBG00000014944 #11	ENSBBBG00000014947 #11	ASH1L (ENSBBBG00000014991) #12	DAP3 (ENSBBBG00000003747)	MSTO1 (ENSBBBG00000015135) #13	ENSBBBG00000015141	ENSBBBG00000007558 #14	SYT11 (ENSBBBG00000003798) #15	RIT1 (ENSBBBG00000015315) #16	KHDC4 (ENSBBBG00000001328) #17	RXFP4 (ENSBBBG00000001313) #18	ARHGEF2 (ENSBBBG00000001262) #19	SSR2 (ENSBBBG00000003501) #20	UBQLN4 (ENSBBBG00000007559) #21	LAMTOR2 (ENSBBBG00000003825) #22	RAB25 (ENSBBBG00000003829) #23	MEX3A (ENSBBBG00000015363) #24	LMNA (ENSBBBG00000003866) #25	SEMA4A (ENSBBBG00000003444) #26	SLC25A44 (ENSBBBG00000003424) #27	PMF1 (ENSBBBG00000015627) #28	BGLAP (ENSBBBG00000015635) #29	PAQR6 (ENSBBBG00000015650) #30	SMG5 (ENSBBBG00000015667) #31	ENSBBBG00000003912 #32	GLMP (ENSBBBG00000015689) #33	CCT3 (ENSBBBG00000015738) #34	TSACC (ENSBBBG00000015743) #35	RHBG (ENSBBBG00000003929) #36	MEF2D (ENSBBBG00000000772) #37
Bos	ANCESTRAL SPECIES		ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.i.a.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.i.a.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Cow	MODERN SPECIES	22	HCN3 (ENSBTAG00000017055) #8	PKLR (ENSBTAG00000017056) #9	FDPS (ENSBTAG00000003948) #10	RUSC1 (ENSBTAG00000054061) #11	ASH1L (ENSBTAG00000003954) #12	DAP3 (ENSBTAG00000001199)	MSTO1 (ENSBTAG00000026613) #13	ENSBTAG00000045596 #14	GON4L (ENSBTAG00000020356) #14	SYT11 (ENSBTAG00000011209) #15	RIT1 (ENSBTAG00000000105) #16	KHDC4 (ENSBTAG00000000108)	ARHGEF2 (ENSBTAG00000000113) #19	SSR2 (ENSBTAG00000001212) #20	UBQLN4 (ENSBTAG00000001548) #21	LAMTOR2 (ENSBTAG00000011754) #22	RAB25 (ENSBTAG00000018914) #23	MEX3A (ENSBTAG00000019158) #24	LMNA (ENSBTAG00000017574) #25	SEMA4A (ENSBTAG00000012228) #26	SLC25A44 (ENSBTAG00000009431) #27	PMF1 (ENSBTAG00000009432)	BGLAP (ENSBTAG00000009433) #29	PAQR6 (ENSBTAG00000009434) #30	SMG5 (ENSBTAG00000009435) #31	TMEM79 (ENSBTAG00000009436)	GLMP (ENSBTAG00000006364) #33	CCT3 (ENSBTAG00000006370) #34	TSACC (ENSBTAG00000049722) #35	RHBG (ENSBTAG00000012234) #36	MEF2D (ENSBTAG00000046545) #37
Hybrid Bos Indicus	MODERN SPECIES	22	HCN3 (ENSBIXG00005011927) #8	PKLR (ENSBIXG00005012018) #9	FDPS (ENSBIXG00005012083) #10	RUSC1 (ENSBIXG00005012185) #11	ASH1L (ENSBIXG00005012290) #12	DAP3 (ENSBIXG00005012416)	MSTO1 (ENSBIXG00005012454) #13	ENSBIXG00005000325 #14	SYT11 (ENSBIXG00005012585) #15	RIT1 (ENSBIXG00005012630) #16	KHDC4 (ENSBIXG00005012701) #17	ENSBIXG00005012726	ARHGEF2 (ENSBIXG00005012933) #19	SSR2 (ENSBIXG00005013052) #20	UBQLN4 (ENSBIXG00005007481) #21	LAMTOR2 (ENSBIXG00005013118) #22	RAB25 (ENSBIXG00005001504) #23	MEX3A (ENSBIXG00005013155) #24	LMNA (ENSBIXG00005013303) #25	SEMA4A (ENSBIXG00005013357) #26	SLC25A44 (ENSBIXG00005013383) #27	ENSBIXG00005013392	BGLAP (ENSBIXG00005013414) #29	PAQR6 (ENSBIXG00005001616) #30	SMG5 (ENSBIXG00005013497) #31	TMEM79 (ENSBIXG00005013531)	GLMP (ENSBIXG00005013569) #33	CCT3 (ENSBIXG00005013620) #34	TSACC (ENSBIXG00005013651) #35	RHBG (ENSBIXG00005013672) #36	MEF2D (ENSBIXG00005013762) #37
Bos_a	ANCESTRAL SPECIES	27	ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256.i.a.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	1034	HCN3 (ENSBMUG00000013008) #8	PKLR (ENSBMUG00000013109) #9	FDPS (ENSBMUG00000013151) #10	RUSC1 (ENSBMUG00000013186) #11	ASH1L (ENSBMUG00000013247) #12	DAP3 (ENSBMUG00000013380)	MSTO1 (ENSBMUG00000013423) #13	ENSBMUG00000013609 #14	SYT11 (ENSBMUG00000013663) #15	RIT1 (ENSBMUG00000013671) #16	KHDC4 (ENSBMUG00000013747) #17	ENSBMUG00000013792	ARHGEF2 (ENSBMUG00000013945) #19	SSR2 (ENSBMUG00000014061) #20	UBQLN4 (ENSBMUG00000014079) #21	ENSBMUG00000014101 #22	RAB25 (ENSBMUG00000014113) #23	MEX3A (ENSBMUG00000014139) #24	LMNA (ENSBMUG00000014271) #25	SEMA4A (ENSBMUG00000014414) #26	SLC25A44 (ENSBMUG00000014438) #27	ENSBMUG00000014459	PAQR6 (ENSBMUG00000014479) #30	SMG5 (ENSBMUG00000014498) #31	TMEM79 (ENSBMUG00000014504)	GLMP (ENSBMUG00000014534) #33	CCT3 (ENSBMUG00000014597) #34	TSACC (ENSBMUG00000014639) #35	RHBG (ENSBMUG00000014644) #36	MEF2D (ENSBMUG00000014724) #37	ENSBMUG00000014767
Wild yak	MODERN SPECIES	1612																ENSBMUG00000007140 #22
Domestic yak	MODERN SPECIES	22	ASH1L (ENSBGRG00000020526) #12	ENSBGRG00000020578	ENSBGRG00000020608	MSTO1 (ENSBGRG00000020857) #13	ENSBGRG00000021040 #14	ENSBGRG00000021483	ENSBGRG00000021494 #14	SYT11 (ENSBGRG00000021562) #15	RIT1 (ENSBGRG00000021581) #16	KHDC4 (ENSBGRG00000021657) #17	ENSBGRG00000021933	ARHGEF2 (ENSBGRG00000022001) #19	SSR2 (ENSBGRG00000022293) #20	ENSBGRG00000022398	UBQLN4 (ENSBGRG00000022445) #21	ENSBGRG00000022629 #22	RAB25 (ENSBGRG00000022700) #23	MEX3A (ENSBGRG00000022736) #24	LMNA (ENSBGRG00000022777) #25	SEMA4A (ENSBGRG00000023018) #26	SLC25A44 (ENSBGRG00000023097) #27	ENSBGRG00000023141	BGLAP (ENSBGRG00000023200) #29	PAQR6 (ENSBGRG00000023244) #30	SMG5 (ENSBGRG00000023383) #31	ENSBGRG00000023682 #32	GLMP (ENSBGRG00000023724) #33	CCT3 (ENSBGRG00000023849) #34	TSACC (ENSBGRG00000024207) #35	RHBG (ENSBGRG00000024238) #36	ENSBGRG00000024335
Cetacea	ANCESTRAL SPECIES		ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074.k #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524.a.a #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Blue whale	MODERN SPECIES		ENSBMSG00010003104 #8	PKLR (ENSBMSG00010003143) #9	ENSBMSG00010003229 #10	RUSC1 (ENSBMSG00010003260) #11	ASH1L (ENSBMSG00010003357) #12	DAP3 (ENSBMSG00010003437)	MSTO1 (ENSBMSG00010003477) #13	ENSBMSG00010003566 #14	ENSBMSG00010004110	SYT11 (ENSBMSG00010004119) #15	RIT1 (ENSBMSG00010004147) #16	KHDC4 (ENSBMSG00010004174) #17	ARHGEF2 (ENSBMSG00010004265) #19	SSR2 (ENSBMSG00010004540) #20	UBQLN4 (ENSBMSG00010004574) #21	LAMTOR2 (ENSBMSG00010004612) #22	RAB25 (ENSBMSG00010004624) #23	MEX3A (ENSBMSG00010004637) #24	LMNA (ENSBMSG00010004668) #25	SEMA4A (ENSBMSG00010004700) #26	SLC25A44 (ENSBMSG00010004726) #27	ENSBMSG00010004738	BGLAP (ENSBMSG00010004757) #29	SMG5 (ENSBMSG00010004787) #31	TMEM79 (ENSBMSG00010004850)	GLMP (ENSBMSG00010004864) #33	CCT3 (ENSBMSG00010004881) #34	RHBG (ENSBMSG00010004893) #36	MEF2D (ENSBMSG00010004921) #37	ENSBMSG00010004948	ENSBMSG00010005020
Odontoceti	DUPLICATION
Odontoceti	DUPLICATION
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074.k #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100.g.a #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524.a.a #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074.k #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100.g.a #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524.a.a.a #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074.k #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100.g.a #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524.a.a.a #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000154947 #7	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074.k #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100.g.a #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524.a.a.a #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Narwhal	MODERN SPECIES	304	CLK2 (ENSMMNG00015012695) #7	HCN3 (ENSMMNG00015012673) #8	PKLR (ENSMMNG00015012630) #9	ENSMMNG00015012598 #10	RUSC1 (ENSMMNG00015012570) #11	ASH1L (ENSMMNG00015012492) #12	DAP3 (ENSMMNG00015012383)	MSTO1 (ENSMMNG00015012309) #13	ENSMMNG00015012250 #14	SYT11 (ENSMMNG00015012196) #15	RIT1 (ENSMMNG00015012172) #16	KHDC4 (ENSMMNG00015012142) #17	ARHGEF2 (ENSMMNG00015012060) #19	SSR2 (ENSMMNG00015012014) #20	UBQLN4 (ENSMMNG00015011968) #21	ENSMMNG00015011942 #22	RAB25 (ENSMMNG00015011919) #23	MEX3A (ENSMMNG00015011903) #24	LMNA (ENSMMNG00015011841) #25	SEMA4A (ENSMMNG00015011785) #26	SLC25A44 (ENSMMNG00015011755) #27	ENSMMNG00015011739	BGLAP (ENSMMNG00015011726) #29	ENSMMNG00015011675 #30	SMG5 (ENSMMNG00015011588) #31	TMEM79 (ENSMMNG00015011552)	GLMP (ENSMMNG00015011520) #33	CCT3 (ENSMMNG00015011489) #34	ENSMMNG00015011474 #35	RHBG (ENSMMNG00015011460) #36	MEF2D (ENSMMNG00015011394) #37
Vaquita	MODERN SPECIES		CLK2 (ENSPSNG00000000440) #7	HCN3 (ENSPSNG00000000564) #8	PKLR (ENSPSNG00000000611) #9	ENSPSNG00000000654 #10	RUSC1 (ENSPSNG00000000714) #11	ASH1L (ENSPSNG00000000798) #12	DAP3 (ENSPSNG00000000898)	MSTO1 (ENSPSNG00000000978) #13	ENSPSNG00000001061 #14	SYT11 (ENSPSNG00000001267) #15	RIT1 (ENSPSNG00000001303) #16	KHDC4 (ENSPSNG00000001328) #17	ARHGEF2 (ENSPSNG00000001483) #19	SSR2 (ENSPSNG00000001665) #20	UBQLN4 (ENSPSNG00000001709) #21	ENSPSNG00000001753 #22	RAB25 (ENSPSNG00000001780) #23	MEX3A (ENSPSNG00000001802) #24	LMNA (ENSPSNG00000001902) #25	SEMA4A (ENSPSNG00000001991) #26	SLC25A44 (ENSPSNG00000002061) #27	ENSPSNG00000002083	BGLAP (ENSPSNG00000002109) #29	PAQR6 (ENSPSNG00000002135) #30	SMG5 (ENSPSNG00000002185) #31	TMEM79 (ENSPSNG00000002228)	GLMP (ENSPSNG00000002245) #33	CCT3 (ENSPSNG00000002288) #34	ENSPSNG00000002309 #35	RHBG (ENSPSNG00000002332) #36	MEF2D (ENSPSNG00000002434) #37
Sperm whale	MODERN SPECIES	15	SHE (ENSPCTG00005012880)	TDRD10 (ENSPCTG00005012748)	EFNA3 (ENSPCTG00005012694)	PBXIP1 (ENSPCTG00005012606)	SHC1 (ENSPCTG00005012451)	ADAR (ENSPCTG00005012266)	KCNN3 (ENSPCTG00005012225)	ASH1L (ENSPCTG00005012095) #12	DAP3 (ENSPCTG00005011863)	MSTO1 (ENSPCTG00005011784) #13	GON4L (ENSPCTG00005011256) #14	SYT11 (ENSPCTG00005011179) #15	RIT1 (ENSPCTG00005011092) #16	SSR2 (ENSPCTG00005010954) #20	UBQLN4 (ENSPCTG00005010892) #21	LAMTOR2 (ENSPCTG00005010831) #22	RAB25 (ENSPCTG00005010780) #23	SMG5 (ENSPCTG00005010741) #31	PAQR6 (ENSPCTG00005010635) #30	BGLAP (ENSPCTG00005010569) #29	PMF1 (ENSPCTG00005010461)	SLC25A44 (ENSPCTG00005010382) #27	ENSPCTG00005010364	ENSPCTG00005010348	ENSPCTG00005010331	SEMA4A (ENSPCTG00005010191) #26	ENSPCTG00005010076 #34	ENSPCTG00005010033 #35	NAXE (ENSPCTG00005009979)	TTC24 (ENSPCTG00005009800)	ENSPCTG00005009657
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00940000161719	ENSGT00940000163237	ENSGT01050000244841.A.a.a	ENSGT00940000158826	ENSGT00530000063841.a	ENSGT00390000016737	ENSGT00940000156266	ENSGT01050000244891.A.d.a.a	ENSGT00950000182886.a.b	ENSGT00940000155527	ENSGT00530000063555.A.a.a	ENSGT00950000183004.a.b.a.a.c.b	ENSGT00950000183132.C	ENSGT00390000001695	ENSGT00940000155341.g.b	ENSGT00390000006100.g.b #22	ENSGT00940000163344.b	ENSGT00940000155341.g.a.a.b	ENSGT00530000064285.j	ENSGT00390000017143	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264.d	ENSGT00390000010172	ENSGT00390000003428	ENSGT00940000164461	ENSGT00440000033811	ENSGT00940000161471	ENSGT00440000038159.qb	ENSGT00940000159453	ENSGT00940000158640
Odontoceti_a	ANCESTRAL SPECIES	23	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826	ENSGT00390000016737	ENSGT00940000156266	ENSGT01050000244891.A.d.a.a	ENSGT00950000182886.a.b	ENSGT00950000185997	ENSGT00940000155527	ENSGT00530000063555.A.a.a	ENSGT00950000183004.a.b.a.a.c.b	ENSGT00950000183132.C	ENSGT00390000001695	ENSGT00940000155341.g.b	ENSGT00390000006100.g.b #22	ENSGT00940000163344.b	ENSGT00940000155341.g.a.a.b	ENSGT00530000064285.j	ENSGT00390000017143	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264.d	ENSGT00390000010172	ENSGT00390000003428	ENSGT00940000164461	ENSGT00440000033811	ENSGT00940000161471	ENSGT00440000038159.qb	ENSGT00940000159453	ENSGT00940000158640
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826	ENSGT00390000016737	ENSGT00940000153147.m.a.a.a.b.a.a.gb	ENSGT00940000156266	ENSGT01050000244891.A.d.a.a	ENSGT00950000182886.a.b	ENSGT00950000185997	ENSGT00940000155527	ENSGT00530000063555.A.a.a	ENSGT00950000183004.a.b.a.a.c.b	ENSGT00950000183132.C	ENSGT00390000001695	ENSGT00940000155341.g.b	ENSGT00390000006100.g.b #22	ENSGT00940000163344.b	ENSGT00940000155341.g.a.a.b	ENSGT00530000064285.j	ENSGT00390000017143	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264.d	ENSGT00390000010172	ENSGT00390000003428	ENSGT00940000164461	ENSGT00440000033811	ENSGT00940000161471	ENSGT00440000038159.qb	ENSGT00940000159453	ENSGT00940000158640
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826	ENSGT00390000016737	ENSGT00940000153147.m.a.a.a.b.a.a.gb	ENSGT00940000156266	ENSGT01050000244891.A.d.a.a	ENSGT00950000182886.a.b	ENSGT00950000185997.a	ENSGT00940000155527	ENSGT00530000063555.A.a.a	ENSGT00950000183004.a.b.a.a.c.b	ENSGT00950000183132.C	ENSGT00390000001695	ENSGT00940000155341.g.b	ENSGT00390000006100.g.b #22	ENSGT00940000163344.b	ENSGT00940000155341.g.a.a.b	ENSGT00530000064285.j	ENSGT00390000017143	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264.d	ENSGT00390000010172	ENSGT00390000003428	ENSGT00940000164461	ENSGT00440000033811	ENSGT00940000161471	ENSGT00440000038159.qb	ENSGT00940000159453	ENSGT00940000158640
Narwhal	MODERN SPECIES	307	CENPC (ENSMMNG00015010752)	ENSMMNG00015010802	EPHA5 (ENSMMNG00015010909)	ENSMMNG00015011106	TECRL (ENSMMNG00015011127)	ENSMMNG00015011164	ENSMMNG00015011177	ADGRL3 (ENSMMNG00015011387)	IGFBP7 (ENSMMNG00015011877)	ENSMMNG00015011894	POLR2B (ENSMMNG00015011928)	ENSMMNG00015011995	NOA1 (ENSMMNG00015012010)	ENSMMNG00015012028	ENSMMNG00015012040	ENSMMNG00015012049 #22	ENSMMNG00015012062	ENSMMNG00015012122	HOPX (ENSMMNG00015012141)	THEGL (ENSMMNG00015012165)	ENSMMNG00015012180	ENSMMNG00015012186	SRP72 (ENSMMNG00015012225)	PAICS (ENSMMNG00015012325)	PPAT (ENSMMNG00015012362)	ENSMMNG00015012406	AASDH (ENSMMNG00015012429)	CRACD (ENSMMNG00015012549)	ENSMMNG00015012615	CEP135 (ENSMMNG00015012654)	EXOC1 (ENSMMNG00015012800)
Beluga whale	MODERN SPECIES	77	CENPC (ENSDLEG00000013357)	ENSDLEG00000013392	EPHA5 (ENSDLEG00000013414)	RPL15 (ENSDLEG00000013495)	ENSDLEG00000013502	TECRL (ENSDLEG00000013514)	ENSDLEG00000013581	ENSDLEG00000013592	ADGRL3 (ENSDLEG00000013614)	ENSDLEG00000013727	IGFBP7 (ENSDLEG00000013741)	ENSDLEG00000013747	POLR2B (ENSDLEG00000013785)	NOA1 (ENSDLEG00000013832)	ENSDLEG00000013849	LAMTOR2 (ENSDLEG00000013858) #22	ENSDLEG00000013873	ENSDLEG00000013880	ENSDLEG00000013894	HOPX (ENSDLEG00000013911)	THEGL (ENSDLEG00000013936)	ARL9 (ENSDLEG00000014007)	SRP72 (ENSDLEG00000014021)	ENSDLEG00000014072	ENSDLEG00000014169	AASDH (ENSDLEG00000014259)	KIAA1211 (ENSDLEG00000014302)	CEP135 (ENSDLEG00000014370)	EXOC1 (ENSDLEG00000014416)	EXOC1L (ENSDLEG00000014446)	PDCL2 (ENSDLEG00000014453)
Vaquita	MODERN SPECIES	16	TMPRSS11D (ENSPSNG00000004003)	GNRHR (ENSPSNG00000003987)	UBA6 (ENSPSNG00000003963)	CENPC (ENSPSNG00000003913)	ENSPSNG00000003896	ENSPSNG00000003889	EPHA5 (ENSPSNG00000003685)	ENSPSNG00000003580	TECRL (ENSPSNG00000003539)	ENSPSNG00000003520	ADGRL3 (ENSPSNG00000002346)	IGFBP7 (ENSPSNG00000001692)	ENSPSNG00000001679	POLR2B (ENSPSNG00000001540)	NOA1 (ENSPSNG00000001492)	ENSPSNG00000001480 #22	ENSPSNG00000001451	ENSPSNG00000001425	ENSPSNG00000001402	HOPX (ENSPSNG00000001376)	THEGL (ENSPSNG00000001329)	ARL9 (ENSPSNG00000001309)	SRP72 (ENSPSNG00000001264)	PAICS (ENSPSNG00000001214)	ENSPSNG00000001197	ENSPSNG00000001179	AASDH (ENSPSNG00000001136)	CRACD (ENSPSNG00000000906)	ENSPSNG00000000807	CEP135 (ENSPSNG00000000783)	EXOC1 (ENSPSNG00000000713)
Sperm whale	MODERN SPECIES	18	CENPC (ENSPCTG00005001007)	ENSPCTG00005001061	EPHA5 (ENSPCTG00005001144)	ENSPCTG00005001343	TECRL (ENSPCTG00005001362)	ADGRL3 (ENSPCTG00005001783)	ENSPCTG00005003966	ENSPCTG00005003979	IGFBP7 (ENSPCTG00005003998)	ENSPCTG00005004007	POLR2B (ENSPCTG00005004031)	NOA1 (ENSPCTG00005004123)	ENSPCTG00005004139	ENSPCTG00005004151	ENSPCTG00005004160	ENSPCTG00005004167 #22	ENSPCTG00005004172	ENSPCTG00005004198	ENSPCTG00005004216	HOPX (ENSPCTG00005004233)	THEGL (ENSPCTG00005004247)	ARL9 (ENSPCTG00005004276)	SRP72 (ENSPCTG00005004329)	PAICS (ENSPCTG00005004385)	PPAT (ENSPCTG00005004431)	ENSPCTG00005004475	AASDH (ENSPCTG00005004515)	CRACD (ENSPCTG00005004658)	ENSPCTG00005004860	CEP135 (ENSPCTG00005004883)	EXOC1 (ENSPCTG00005004932)
Odontoceti	ANCESTRAL SPECIES																	ENSGT00390000006100.h #22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000006100.h #22
Dolphin	MODERN SPECIES	1344				FDPS (ENSTTRG00000013326) #10	RUSC1 (ENSTTRG00000013327) #11	ASH1L (ENSTTRG00000013329) #12	DAP3 (ENSTTRG00000013332)	ENSTTRG00000013334	ENSTTRG00000013336 #14	SYT11 (ENSTTRG00000013337) #15	RIT1 (ENSTTRG00000013338) #16	KHDC4 (ENSTTRG00000013339) #17	ARHGEF2 (ENSTTRG00000013341) #19	SSR2 (ENSTTRG00000013342) #20	UBQLN4 (ENSTTRG00000013343) #21	LAMTOR2 (ENSTTRG00000013344) #22	RAB25 (ENSTTRG00000013345) #23	MEX3A (ENSTTRG00000013346) #24
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00390000006100.h #22
Monodontidae	ANCESTRAL SPECIES																	ENSGT00390000006100.h #22
Beluga whale	MODERN SPECIES	69	SCAMP3 (ENSDLEG00000015441) #7	HCN3 (ENSDLEG00000015901) #8	PKLR (ENSDLEG00000015946) #9	FDPS (ENSDLEG00000016328) #10	RUSC1 (ENSDLEG00000016359) #11	ASH1L (ENSDLEG00000016452) #12	DAP3 (ENSDLEG00000016565)	MSTO1 (ENSDLEG00000017154) #13	ENSDLEG00000017562 #14	SYT11 (ENSDLEG00000017715) #15	RIT1 (ENSDLEG00000017727) #16	KIAA0907 (ENSDLEG00000017767) #17	ARHGEF2 (ENSDLEG00000018134) #19	SSR2 (ENSDLEG00000019690) #20	UBQLN4 (ENSDLEG00000019705) #21	ENSDLEG00000019714 #22	RAB25 (ENSDLEG00000019718) #23	LMNA (ENSDLEG00000019723) #25	MEX3A (ENSDLEG00000019727) #24	SEMA4A (ENSDLEG00000019729) #26	SLC25A44 (ENSDLEG00000019739) #27	ENSDLEG00000019747	BGLAP (ENSDLEG00000019752) #29	PAQR6 (ENSDLEG00000019756) #30	SMG5 (ENSDLEG00000019769) #31	TMEM79 (ENSDLEG00000019854)	GLMP (ENSDLEG00000019860) #33	CCT3 (ENSDLEG00000019863) #34	ENSDLEG00000019867 #35	RHBG (ENSDLEG00000019871) #36	MEF2D (ENSDLEG00000019879) #37
Atlantogenata	ANCESTRAL SPECIES	15	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Afrotheria	ANCESTRAL SPECIES	36	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Tenrec	MODERN SPECIES	5184															ENSETEG00000005543 #21	LAMTOR2 (ENSETEG00000005546) #22	ENSETEG00000005548 #23
Afrotheria_a	ANCESTRAL SPECIES	37	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Elephant	MODERN SPECIES	325	HCN3 (ENSLAFG00000003265) #8	PKLR (ENSLAFG00000003270) #9	RUSC1 (ENSLAFG00000029910) #11	ASH1L (ENSLAFG00000002197) #12	DAP3 (ENSLAFG00000005200)	MSTO1 (ENSLAFG00000006224) #13	ENSLAFG00000005205 #14	SYT11 (ENSLAFG00000030067) #15	RIT1 (ENSLAFG00000014967) #16	KHDC4 (ENSLAFG00000014971) #17	RXFP4 (ENSLAFG00000011205) #18	ARHGEF2 (ENSLAFG00000011210) #19	SLC25A44 (ENSLAFG00000022753) #27	SSR2 (ENSLAFG00000011219) #20	UBQLN4 (ENSLAFG00000011221) #21	LAMTOR2 (ENSLAFG00000029041) #22	RAB25 (ENSLAFG00000009222) #23	MEX3A (ENSLAFG00000009220) #24	LMNA (ENSLAFG00000002832) #25	SEMA4A (ENSLAFG00000002834) #26	PMF1 (ENSLAFG00000025558) #28	BGLAP (ENSLAFG00000016824) #29	PAQR6 (ENSLAFG00000026867) #30	SMG5 (ENSLAFG00000006241) #31	TMEM79 (ENSLAFG00000027928)	GLMP (ENSLAFG00000005387) #33	CCT3 (ENSLAFG00000005391) #34	TSACC (ENSLAFG00000005393) #35	RHBG (ENSLAFG00000005397) #36	MEF2D (ENSLAFG00000015564) #37	IQGAP3 (ENSLAFG00000003433)
Hyrax	MODERN SPECIES	4408															ENSPCAG00000014497 #21	LAMTOR2 (ENSPCAG00000014566) #22	RAB25 (ENSPCAG00000014579) #23
Xenarthra	ANCESTRAL SPECIES	37														ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Armadillo	MODERN SPECIES	1939														SSR2 (ENSDNOG00000017062) #20	ENSDNOG00000017067 #21	LAMTOR2 (ENSDNOG00000017068) #22	RAB25 (ENSDNOG00000039155) #23	ENSDNOG00000037981 #24	LMNA (ENSDNOG00000010869) #25	ENSDNOG00000035727 #26
Sloth	MODERN SPECIES	1546																LAMTOR2 (ENSCHOG00000012908) #22	ENSCHOG00000012921 #23
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00390000016256.b #14	ENSGT00530000064067 #13	ENSGT00390000016256.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Opossum	MODERN SPECIES	1	HCN3 (ENSMODG00000017060) #8	PKLR (ENSMODG00000017053) #9	ENSMODG00000042246 #10	RUSC1 (ENSMODG00000017044) #11	ASH1L (ENSMODG00000017033) #12	DAP3 (ENSMODG00000017024)	ENSMODG00000025668 #14	MSTO1 (ENSMODG00000017015) #13	ENSMODG00000017006 #14	SYT11 (ENSMODG00000016994) #15	RIT1 (ENSMODG00000016989) #16	KHDC4 (ENSMODG00000016981) #17	ARHGEF2 (ENSMODG00000016970) #19	SSR2 (ENSMODG00000016964) #20	UBQLN4 (ENSMODG00000016961) #21	LAMTOR2 (ENSMODG00000016959) #22	RAB25 (ENSMODG00000048622) #23	MEX3A (ENSMODG00000016954) #24	LMNA (ENSMODG00000016946) #25	SEMA4A (ENSMODG00000016928) #26	SLC25A44 (ENSMODG00000016921) #27	PMF1 (ENSMODG00000016918) #28	ENSMODG00000016914 #29	PAQR6 (ENSMODG00000016910) #30	SMG5 (ENSMODG00000016901) #31	TMEM79 (ENSMODG00000016892)	GLMP (ENSMODG00000016888) #33	CCT3 (ENSMODG00000016883) #34	TSACC (ENSMODG00000016872) #35	RHBG (ENSMODG00000016867) #36	MEF2D (ENSMODG00000016861) #37
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00390000016256.b #14	ENSGT00530000064067 #13	ENSGT00390000016256.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Diprotodontia	ANCESTRAL SPECIES	30	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00390000016256.b #14	ENSGT00530000064067 #13	ENSGT00390000016256.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
Diprotodontia_a	ANCESTRAL SPECIES	28	ENSGT00940000162023 #8	ENSGT00390000008859.b.c #9	ENSGT00900000141074 #10	ENSGT00900000141033.b.b #11	ENSGT00940000156698 #12	ENSGT00390000015248	ENSGT00390000016256.b #14	ENSGT00530000064067 #13	ENSGT00390000016256.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000012524 #35	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37
koala	MODERN SPECIES	42	FDPS (ENSPCIG00000021697) #10	RUSC1 (ENSPCIG00000021696) #11	ASH1L (ENSPCIG00000021694) #12	DAP3 (ENSPCIG00000021692)	ENSPCIG00000021691 #14	ENSPCIG00000035411	MSTO1 (ENSPCIG00000021688) #13	ENSPCIG00000019134 #14	ENSPCIG00000031923 #14	SYT11 (ENSPCIG00000036428) #15	RIT1 (ENSPCIG00000019094) #16	KHDC4 (ENSPCIG00000019084) #17	ARHGEF2 (ENSPCIG00000019069) #19	SSR2 (ENSPCIG00000019065) #20	UBQLN4 (ENSPCIG00000018959) #21	LAMTOR2 (ENSPCIG00000018952) #22	RAB25 (ENSPCIG00000018951) #23	MEX3A (ENSPCIG00000018950) #24	LMNA (ENSPCIG00000018949) #25	SEMA4A (ENSPCIG00000018948) #26	SLC25A44 (ENSPCIG00000018947) #27	PMF1 (ENSPCIG00000018946) #28	PAQR6 (ENSPCIG00000018944) #30	SMG5 (ENSPCIG00000018938) #31	TMEM79 (ENSPCIG00000018937)	GLMP (ENSPCIG00000018935) #33	CCT3 (ENSPCIG00000018933) #34	TSACC (ENSPCIG00000018932) #35	RHBG (ENSPCIG00000018705) #36	MEF2D (ENSPCIG00000024228) #37	IQGAP3 (ENSPCIG00000024229)
Common wonbat	MODERN SPECIES	1035	FDPS (ENSVURG00010015053) #10	RUSC1 (ENSVURG00010015034) #11	ASH1L (ENSVURG00010014983) #12	ENSVURG00010014964	ENSVURG00010014951 #14	ENSVURG00010014937	MSTO1 (ENSVURG00010014920) #13	ENSVURG00010014888 #14	SYT11 (ENSVURG00010014876) #15	RIT1 (ENSVURG00010014864) #16	KHDC4 (ENSVURG00010014857) #17	ENSVURG00010014832	ARHGEF2 (ENSVURG00010014790) #19	SSR2 (ENSVURG00010014748) #20	UBQLN4 (ENSVURG00010014662) #21	LAMTOR2 (ENSVURG00010014640) #22	RAB25 (ENSVURG00010014628) #23	MEX3A (ENSVURG00010014622) #24	LMNA (ENSVURG00010014586) #25	SEMA4A (ENSVURG00010014559) #26	SLC25A44 (ENSVURG00010014546) #27	PMF1 (ENSVURG00010014537) #28	BGLAP (ENSVURG00010014520) #29	PAQR6 (ENSVURG00010014505) #30	SMG5 (ENSVURG00010014439) #31	TMEM79 (ENSVURG00010014422)	GLMP (ENSVURG00010014413) #33	CCT3 (ENSVURG00010014395) #34	ENSVURG00010014387 #35	RHBG (ENSVURG00010014362) #36	MEF2D (ENSVURG00010014293) #37
Wallaby	MODERN SPECIES	6522															UBQLN4 (ENSMEUG00000016573) #21	LAMTOR2 (ENSMEUG00000016588) #22	RAB25 (ENSMEUG00000016598) #23
Tasmanian devil	MODERN SPECIES	3	PKLR (ENSSHAG00000008590) #9	FDPS (ENSSHAG00000009077) #10	RUSC1 (ENSSHAG00000026915) #11	ASH1L (ENSSHAG00000009472) #12	ENSSHAG00000028324	ENSSHAG00000011327 #14	ENSSHAG00000030016	ENSSHAG00000011742 #13	ENSSHAG00000011779 #14	ENSSHAG00000012239 #15	RIT1 (ENSSHAG00000012524) #16	KHDC4 (ENSSHAG00000012665) #17	ARHGEF2 (ENSSHAG00000020979) #19	ENSSHAG00000012964 #20	UBQLN4 (ENSSHAG00000013254) #21	LAMTOR2 (ENSSHAG00000013314) #22	RAB25 (ENSSHAG00000013327) #23	MEX3A (ENSSHAG00000032241) #24	LMNA (ENSSHAG00000013712) #25	SEMA4A (ENSSHAG00000013803) #26	SLC25A44 (ENSSHAG00000023169) #27	PMF1 (ENSSHAG00000013991) #28	BGLAP (ENSSHAG00000022571) #29	PAQR6 (ENSSHAG00000014101) #30	SMG5 (ENSSHAG00000014163) #31	TMEM79 (ENSSHAG00000014298)	ENSSHAG00000014320 #33	CCT3 (ENSSHAG00000014346) #34	TSACC (ENSSHAG00000024448) #35	RHBG (ENSSHAG00000014508) #36	MEF2D (ENSSHAG00000014927) #37
Platypus	MODERN SPECIES	88	ENSOANG00000038919	ENTREP3 (ENSOANG00000038845)	SCAMP3 (ENSOANG00000037835)	CLK2 (ENSOANG00000049819) #7	PKLR (ENSOANG00000044012) #9	FDPS (ENSOANG00000051014) #10	ENSOANG00000043091 #11	DAP3 (ENSOANG00000031925)	ENSOANG00000042137	ENSOANG00000049330 #14	SYT11 (ENSOANG00000042253) #15	KHDC4 (ENSOANG00000031515) #17	ARHGEF2 (ENSOANG00000047409) #19	SSR2 (ENSOANG00000041072) #20	UBQLN4 (ENSOANG00000040199) #21	ENSOANG00000039502 #22	RAB25 (ENSOANG00000036213) #23	MEX3A (ENSOANG00000039670) #24	ENSOANG00000048604	ENSOANG00000041083	LMNA (ENSOANG00000012813) #25	SEMA4A (ENSOANG00000009659) #26	SLC25A44 (ENSOANG00000043363) #27	ENSOANG00000050835 #28	ENSOANG00000036654	SMG5 (ENSOANG00000048288) #31	GLMP (ENSOANG00000031128) #33	CCT3 (ENSOANG00000003511) #34	ENSOANG00000046848	MEF2D (ENSOANG00000049864) #37	RHBG (ENSOANG00000044068) #36
Sauria	ANCESTRAL SPECIES	28	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000005125 #20	ENSGT00940000158341 #19
Lepidosauria	ANCESTRAL SPECIES	36								ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000005125 #20	ENSGT00940000158341 #19	ENSGT01030000234534.B.a.a.b #18
tuatara	MODERN SPECIES	1930								ENSSPUG00000004101	ENSSPUG00000004095	RHBG (ENSSPUG00000003411) #36	MEF2D (ENSSPUG00000003141) #37	IQGAP3 (ENSSPUG00000002736)	NAXE (ENSSPUG00000002689)	GPATCH4 (ENSSPUG00000002674)	UBQLN4 (ENSSPUG00000002649) #21	LAMTOR2 (ENSSPUG00000002639) #22	RAB25 (ENSSPUG00000002555) #23	ENSSPUG00000002526	MEX3A (ENSSPUG00000002522) #24	LMNA (ENSSPUG00000002510) #25	SEMA4A (ENSSPUG00000002416) #26	SLC25A44 (ENSSPUG00000002391) #27	PMF1 (ENSSPUG00000002356) #28	PAQR6 (ENSSPUG00000002286) #30	SMG5 (ENSSPUG00000002260) #31	TMEM79 (ENSSPUG00000002207)	GLMP (ENSSPUG00000002191) #33	CCT3 (ENSSPUG00000002180) #34	SSR2 (ENSSPUG00000002144) #20	ARHGEF2 (ENSSPUG00000002103) #19	ENSSPUG00000002083
Episquamata	ANCESTRAL SPECIES	33					ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00940000167298	ENSGT00410000026290.i #29
Toxicofera	ANCESTRAL SPECIES	61									ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451
Elapidae	ANCESTRAL SPECIES	41						ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343.c.b	ENSGT00940000157343.c.a	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00960000192439.a	ENSGT01020000230359.A	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451.s	ENSGT00510000048151
Indian cobra	MODERN SPECIES	17	ATG2A (ENSNNAG00000018767)	SCYL1 (ENSNNAG00000018772)	ENSNNAG00000018776	PC (ENSNNAG00000018779)	ENSNNAG00000018800	ENSNNAG00000018802	ENSNNAG00000018804	RHBG (ENSNNAG00000018811) #36	ENSNNAG00000018829	ENSNNAG00000018839	HAPLN2 (ENSNNAG00000018844)	MEF2D (ENSNNAG00000018857) #37	IQGAP3 (ENSNNAG00000018874)	NAXE (ENSNNAG00000018884)	UBQLN4 (ENSNNAG00000018894) #21	LAMTOR2 (ENSNNAG00000018899) #22	RAB25 (ENSNNAG00000018902) #23	ENSNNAG00000018907	ENSNNAG00000018909	MEX3A (ENSNNAG00000018913) #24	LMNA (ENSNNAG00000018915) #25	SEMA4A (ENSNNAG00000018920) #26	SLC25A44 (ENSNNAG00000018928) #27	BGLAP (ENSNNAG00000018931) #29	ENSNNAG00000018936	ENSNNAG00000018941	ENSNNAG00000018945	ENSNNAG00000018946	CX3CR1 (ENSNNAG00000018948)	ENSNNAG00000018951	ENSNNAG00000018956
Elapidae_a	ANCESTRAL SPECIES	94						ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343.c.b	ENSGT00940000157343.c.a	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00960000192439.a	ENSGT01020000230359.A	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451.s	ENSGT00510000048151	ENSGT00640000091486.a	ENSGT00390000018613.b	ENSGT00940000164681
Acanthophiinae	ANCESTRAL SPECIES	81						ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343.c.b	ENSGT00940000157343.c.a	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000163126	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00960000192439.a	ENSGT01020000230359.A	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451.s	ENSGT00510000048151	ENSGT00640000091486.a	ENSGT00390000018613.b
Mainland tiger snake	MODERN SPECIES	265	PPP2R5B (ENSNSUG00000000357)	ENSNSUG00000002041	ATG2A (ENSNSUG00000002057)	ENSNSUG00000002120	PC (ENSNSUG00000002123)	ENSNSUG00000002208	ENSNSUG00000002213	ENSNSUG00000002214	HAPLN2 (ENSNSUG00000002218)	RHBG (ENSNSUG00000002224) #36	MEF2D (ENSNSUG00000002226) #37	ENSNSUG00000002233	ENSNSUG00000002240	NAXE (ENSNSUG00000002248)	UBQLN4 (ENSNSUG00000002251) #21	LAMTOR2 (ENSNSUG00000002262) #22	ENSNSUG00000002265	MEX3A (ENSNSUG00000002275) #24
Eastern brown snake	MODERN SPECIES	96	ENSPTXG00000016505	GPHA2 (ENSPTXG00000016503)	PPP2R5B (ENSPTXG00000016501)	ENSPTXG00000016498	ATG2A (ENSPTXG00000016494)	ENSPTXG00000016490	ENSPTXG00000016488	PC (ENSPTXG00000016469)	ENSPTXG00000016468	ENSPTXG00000016467	HAPLN2 (ENSPTXG00000016465)	RHBG (ENSPTXG00000016463) #36	MEF2D (ENSPTXG00000016452) #37	IQGAP3 (ENSPTXG00000016444)	UBQLN4 (ENSPTXG00000016442) #21	LAMTOR2 (ENSPTXG00000016441) #22	RAB25 (ENSPTXG00000016440) #23	ENSPTXG00000016439	ENSPTXG00000016437	MEX3A (ENSPTXG00000016434) #24	LMNA (ENSPTXG00000016432) #25	ENSPTXG00000016426	ENSPTXG00000016424	ENSPTXG00000016422	ENSPTXG00000016419	CX3CR1 (ENSPTXG00000016417)	VANGL2 (ENSPTXG00000016413)	ENSPTXG00000016411	NHLH1 (ENSPTXG00000016409)	NCSTN (ENSPTXG00000016406)	COPA (ENSPTXG00000015419)
Blue-lipped sea krait	MODERN SPECIES	2466													IQGAP3 (ENSLLTG00000001258)	NAXE (ENSLLTG00000006407)	UBQLN4 (ENSLLTG00000006421) #21	LAMTOR2 (ENSLLTG00000006447) #22	RAB25 (ENSLLTG00000006465) #23	ENSLLTG00000006480	MEX3A (ENSLLTG00000006498) #24
Laterata	ANCESTRAL SPECIES	79															ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00940000167298	ENSGT00410000026290.i #29
Common wall lizard	MODERN SPECIES	7	IQGAP3 (ENSPMRG00000017460)	TTC24 (ENSPMRG00000017485)	ENSPMRG00000017492	ENSPMRG00000017496	GPATCH4 (ENSPMRG00000017498)	NAXE (ENSPMRG00000017502)	ENSPMRG00000017504	ENSPMRG00000017511	ENSPMRG00000017521	ENSPMRG00000017525	ENSPMRG00000017535	ENSPMRG00000017541	ENSPMRG00000017551	ENSPMRG00000017565	UBQLN4 (ENSPMRG00000017572) #21	LAMTOR2 (ENSPMRG00000017582) #22	RAB25 (ENSPMRG00000017595) #23	ENSPMRG00000017624	ENSPMRG00000017630	MEX3A (ENSPMRG00000017636) #24	LMNA (ENSPMRG00000017646) #25	ENSPMRG00000017660 #26	ENSPMRG00000017669 #26	ENSPMRG00000017683 #26	SLC25A44 (ENSPMRG00000017691) #27	PMF1 (ENSPMRG00000017696) #28	ENSPMRG00000017700	ENSPMRG00000017706	VANGL2 (ENSPMRG00000017711)	ENSPMRG00000017721	NHLH1 (ENSPMRG00000017730)
Argentine black and white tegu	MODERN SPECIES	150			CCT3 (ENSSMRG00000015855) #34	ENSSMRG00000015856 #33	LGALS12 (ENSSMRG00000015858)	PC (ENSSMRG00000015860)	ENSSMRG00000015861	BCAN (ENSSMRG00000015863)	HAPLN2 (ENSSMRG00000015864)	GPATCH4 (ENSSMRG00000015866)	NAXE (ENSSMRG00000015867)	ENSSMRG00000015868	IQGAP3 (ENSSMRG00000015869)	MEF2D (ENSSMRG00000017410) #37	UBQLN4 (ENSSMRG00000017524) #21	LAMTOR2 (ENSSMRG00000017526) #22	RAB25 (ENSSMRG00000017527) #23	ENSSMRG00000017528	MEX3A (ENSSMRG00000017529) #24	LMNA (ENSSMRG00000017530) #25	SEMA4A (ENSSMRG00000017533) #26	SLC25A44 (ENSSMRG00000017536) #27	ENSSMRG00000017539	ENSSMRG00000017540 #29	VANGL2 (ENSSMRG00000017543)	ENSSMRG00000017546	NHLH1 (ENSSMRG00000017548)	NCSTN (ENSSMRG00000017550)	COPA (ENSSMRG00000017553)
Archelosauria	ANCESTRAL SPECIES	27	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000005125 #20	ENSGT00940000158341 #19
Cryptodira	ANCESTRAL SPECIES	20	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000005125 #20	ENSGT00940000158341 #19
Testudinoidea	ANCESTRAL SPECIES	17	ENSGT00940000157485	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765.n	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131.a #33	ENSGT00570000079224 #34	ENSGT00390000005125 #20	ENSGT00940000158341 #19
Emydidae	ANCESTRAL SPECIES	18	ENSGT00940000157485	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765.n	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244.h.b #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131.a #33	ENSGT00570000079224 #34	ENSGT00390000005125 #20	ENSGT00940000158341 #19
Three-toed box turtle	MODERN SPECIES	102	SH2D2A (ENSTMTG00000020518)	PRCC (ENSTMTG00000020541)	HDGF (ENSTMTG00000020549)	MRPL24 (ENSTMTG00000020554)	METTL25B (ENSTMTG00000020559)	ISG20L2 (ENSTMTG00000020564)	CRABP2 (ENSTMTG00000020566)	ENSTMTG00000020577	ENSTMTG00000020582	BCAN (ENSTMTG00000020597)	HAPLN2 (ENSTMTG00000020622)	RHBG (ENSTMTG00000020629) #36	MEF2D (ENSTMTG00000020638) #37	IQGAP3 (ENSTMTG00000020666)	UBQLN4 (ENSTMTG00000020912) #21	LAMTOR2 (ENSTMTG00000020971) #22	RAB25 (ENSTMTG00000020976) #23	ENSTMTG00000020981	ENSTMTG00000020985	MEX3A (ENSTMTG00000020991) #24	ENSTMTG00000021000	ENSTMTG00000021004 #26	ENSTMTG00000021008 #26	SLC25A44 (ENSTMTG00000021015) #27	PMF1 (ENSTMTG00000021018) #28	ENSTMTG00000021022	PAQR6 (ENSTMTG00000021023) #30	SMG5 (ENSTMTG00000021032) #31	TMEM79 (ENSTMTG00000021042)	GLMP (ENSTMTG00000021048) #33	CCT3 (ENSTMTG00000021053) #34
painted turtle	MODERN SPECIES	785	ENSCPBG00000025702	GBA1 (ENSCPBG00000025703)	MTX1 (ENSCPBG00000025708)	THBS3 (ENSCPBG00000025710)	KHDC4 (ENSCPBG00000025715) #17	RIT1 (ENSCPBG00000025719) #16	SYT11 (ENSCPBG00000025720) #15	ENSCPBG00000025730 #14	MSTO1 (ENSCPBG00000025784) #13	DAP3 (ENSCPBG00000025787)	ENSCPBG00000025790 #12	IQGAP3 (ENSCPBG00000025794)	NAXE (ENSCPBG00000025800)	GPATCH4 (ENSCPBG00000025803)	UBQLN4 (ENSCPBG00000025810) #21	LAMTOR2 (ENSCPBG00000025814) #22	RAB25 (ENSCPBG00000025817) #23	ENSCPBG00000025819	MEX3A (ENSCPBG00000025821) #24	ENSCPBG00000025823 #25	SEMA4A (ENSCPBG00000025830) #26	SLC25A44 (ENSCPBG00000025837) #27	PMF1 (ENSCPBG00000025840) #28	BGLAP (ENSCPBG00000025842) #29	PAQR6 (ENSCPBG00000025845) #30	SMG5 (ENSCPBG00000025848) #31	TMEM79 (ENSCPBG00000025854)	GLMP (ENSCPBG00000025860) #33	CCT3 (ENSCPBG00000025861) #34	SSR2 (ENSCPBG00000025864) #20	ARHGEF2 (ENSCPBG00000025867) #19
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00940000157485	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765.n	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000163126	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00960000189418	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131.a #33	ENSGT00570000079224 #34	ENSGT00390000005125 #20
Abingdon island giant tortoise	MODERN SPECIES	1671	MRPL24 (ENSCABG00000017743)	METTL25B (ENSCABG00000017746)	ISG20L2 (ENSCABG00000017748)	ENSCABG00000017751	ENSCABG00000017754	ENSCABG00000017759	ENSCABG00000017765	HAPLN2 (ENSCABG00000017810)	RHBG (ENSCABG00000017984) #36	MEF2D (ENSCABG00000017991) #37	IQGAP3 (ENSCABG00000018011)	NAXE (ENSCABG00000018099)	ENSCABG00000018102	ENSCABG00000018117	UBQLN4 (ENSCABG00000018121) #21	LAMTOR2 (ENSCABG00000018126) #22	RAB25 (ENSCABG00000018130) #23	ENSCABG00000018133	ENSCABG00000018135	MEX3A (ENSCABG00000018137) #24	LMNA (ENSCABG00000018140) #25	SEMA4A (ENSCABG00000018143) #26	SLC25A44 (ENSCABG00000018148) #27	PMF1 (ENSCABG00000018150) #28	ENSCABG00000018151 #30	ENSCABG00000018152 #30	SMG5 (ENSCABG00000018154) #31	TMEM79 (ENSCABG00000018156)	ENSCABG00000018157 #33	ENSCABG00000018158 #33	CCT3 (ENSCABG00000018159) #34
Goode s thornscrub tortoise	MODERN SPECIES	16	MRPL24 (ENSGEVG00005014131)	METTL25B (ENSGEVG00005014161)	ISG20L2 (ENSGEVG00005014190)	CRABP2 (ENSGEVG00005014210)	ENSGEVG00005014250	ENSGEVG00005014272	ENSGEVG00005014294	BCAN (ENSGEVG00005014368)	HAPLN2 (ENSGEVG00005014721)	RHBG (ENSGEVG00005015040) #36	MEF2D (ENSGEVG00005015371) #37	IQGAP3 (ENSGEVG00005015449)	NAXE (ENSGEVG00005016400)	GPATCH4 (ENSGEVG00005016428)	UBQLN4 (ENSGEVG00005016451) #21	LAMTOR2 (ENSGEVG00005016481) #22	RAB25 (ENSGEVG00005016498) #23	ENSGEVG00005016590	MEX3A (ENSGEVG00005016649) #24	LMNA (ENSGEVG00005016668) #25	SEMA4A (ENSGEVG00005016697) #26	SLC25A44 (ENSGEVG00005016726) #27	PMF1 (ENSGEVG00005016760) #28	ENSGEVG00005016778	PAQR6 (ENSGEVG00005016803) #30	SMG5 (ENSGEVG00005016873) #31	TMEM79 (ENSGEVG00005016914)	GLMP (ENSGEVG00005017028) #33	CCT3 (ENSGEVG00005017052) #34	SSR2 (ENSGEVG00005017086) #20	ARHGEF2 (ENSGEVG00005017131) #19
Archosauria	ANCESTRAL SPECIES	28	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000005125 #20	ENSGT00510000047412.a #17
Australian saltwater crocodile	MODERN SPECIES	15	MRPL24 (ENSCPRG00005007941)	METTL25B (ENSCPRG00005007936)	ISG20L2 (ENSCPRG00005007934)	CRABP2 (ENSCPRG00005007933)	ENSCPRG00005007931	ENSCPRG00005007929	BCAN (ENSCPRG00005007910)	HAPLN2 (ENSCPRG00005007895)	RHBG (ENSCPRG00005007888) #36	MEF2D (ENSCPRG00005007870) #37	IQGAP3 (ENSCPRG00005007853)	TTC24 (ENSCPRG00005007848)	NAXE (ENSCPRG00005007843)	GPATCH4 (ENSCPRG00005007835)	UBQLN4 (ENSCPRG00005007826) #21	LAMTOR2 (ENSCPRG00005007823) #22	RAB25 (ENSCPRG00005007819) #23	ENSCPRG00005007809	MEX3A (ENSCPRG00005007807) #24	LMNA (ENSCPRG00005007803) #25	BGLAP (ENSCPRG00005007799) #29	ENSCPRG00005007797	ENSCPRG00005007796 #30	ENSCPRG00005007795 #30	SMG5 (ENSCPRG00005007786) #31	TMEM79 (ENSCPRG00005007775)	GLMP (ENSCPRG00005007771) #33
Aves	ANCESTRAL SPECIES	31	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000005125 #20	ENSGT00510000047412.a #17
Neognathae	ANCESTRAL SPECIES	28	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000005125 #20
Galloanserae	ANCESTRAL SPECIES	36	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000005125 #20	ENSGT00940000155176	ENSGT00940000157759
Anatidae	ANCESTRAL SPECIES	81							ENSGT00940000167106	ENSGT00940000157343.g	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463.b #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00960000189418	ENSGT00940000154566 #31	ENSGT00390000018130.a.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000159348.e
Duck	MODERN SPECIES		ENSAPLG00000011089	ENSAPLG00000010976	PDK3 (ENSAPLG00000010492)	ENSAPLG00000010281	POLA1 (ENSAPLG00000008944)	ENSAPLG00000025069	ENSAPLG00000022772	ENSAPLG00000022122	ENSAPLG00000019671	IL1RAPL1 (ENSAPLG00000003925)	NR0B1 (ENSAPLG00000019472)	TASL (ENSAPLG00000002076)	ENSAPLG00000003111	TAB3 (ENSAPLG00000002911)	ENSAPLG00000016297	LAMTOR2 (ENSAPLG00000001483) #22	ENSAPLG00000007792	ENSAPLG00000022874	ENSAPLG00000023391	TMEM47 (ENSAPLG00000007982)	ENSAPLG00000028806	ENSAPLG00000022017	ENSAPLG00000030900	ENSAPLG00000014415	ENSAPLG00000019280	ENSAPLG00000018874	ENSAPLG00000021983	GET1 (ENSAPLG00000023365)	ENSAPLG00000030604	ENSAPLG00000014570	ENSAPLG00000014951
Pink-footed goose	MODERN SPECIES	362						ENSABRG00000006524	ENSABRG00000006516	ENSABRG00000006508	HAPLN2 (ENSABRG00000006504)	RHBG (ENSABRG00000006501) #36	MEF2D (ENSABRG00000006481) #37	ENSABRG00000006474	IQGAP3 (ENSABRG00000006462)	ENSABRG00000006447	ENSABRG00000006441	LAMTOR2 (ENSABRG00000006434) #22	UBQLN4 (ENSABRG00000006418) #21	RAB25 (ENSABRG00000006405) #23	ENSABRG00000006400	MEX3A (ENSABRG00000006394) #24	LMNA (ENSABRG00000006382) #25	SEMA4A (ENSABRG00000006369) #26	SLC25A44 (ENSABRG00000006360) #27	PMF1 (ENSABRG00000006352) #28	ENSABRG00000006348 #29	SMG5 (ENSABRG00000006336) #31	HORMAD1 (ENSABRG00000006294)	GOLPH3L (ENSABRG00000006261)	ENSA (ENSABRG00000006255)	MCL1 (ENSABRG00000006246)
Phasianidae	ANCESTRAL SPECIES	30	ENSGT00390000012355.B.b	ENSGT01100000264033	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165	ENSGT00950000182940.b.a.b	ENSGT00870000136537	ENSGT00940000160276	ENSGT00940000159172	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00960000189418	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000010993	ENSGT00950000182900.D	ENSGT00390000000230	ENSGT00390000019377.a
Phasianidae_b	ANCESTRAL SPECIES	38	ENSGT00730000111185	ENSGT00390000012355.B.b	ENSGT01100000264033	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165	ENSGT00950000182940.b.a.b	ENSGT00870000136537	ENSGT00940000160276	ENSGT00940000159172	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00440000037582
Chicken	MODERN SPECIES	17	ENSGALG00010028698	BOLA1 (ENSGALG00010027977)	SV2A (ENSGALG00010028753)	SF3B4 (ENSGALG00010028887)	MTMR11 (ENSGALG00010028752)	OTUD7B (ENSGALG00010028750)	ENSGALG00010027297	ENSGALG00010027354	ARHGEF2 (ENSGALG00010027310) #19	IQGAP3 (ENSGALG00010028108)	TTC24 (ENSGALG00010028097)	ENSGALG00010028094	NAXE (ENSGALG00010028088)	ENSGALG00010028085	UBQLN4 (ENSGALG00010028081) #21	LAMTOR2 (ENSGALG00010028078) #22	RAB25 (ENSGALG00010028075) #23	ENSGALG00010028072	MEX3A (ENSGALG00010028070) #24	ENSGALG00010028066 #25	ENSGALG00010027294	ENSGALG00010027978	ENSGALG00010027300	ANP32E (ENSGALG00010028507)	PLEKHO1 (ENSGALG00010028502)	VPS45 (ENSGALG00010028500)	ENSGALG00010028494	ENSGALG00010028492	NECTIN4 (ENSGALG00010028490)	ARHGAP30 (ENSGALG00010028486)	USF1 (ENSGALG00010028485)
Turkey	MODERN SPECIES	1201															ENSMGAG00000001186	LAMTOR2 (ENSMGAG00000022966) #22	UBQLN4 (ENSMGAG00000000655) #21	ENSMGAG00000018320	ENSMGAG00000015563 #24	ENSMGAG00000020816
Japanese quail	MODERN SPECIES	17											ANP32E (ENSCJPG00005013913)	PLEKHO1 (ENSCJPG00005013914)	VPS45 (ENSCJPG00005013915)	ENSCJPG00005013916	UBQLN4 (ENSCJPG00005013917) #21	LAMTOR2 (ENSCJPG00005013918) #22	RAB25 (ENSCJPG00005013919) #23	ENSCJPG00005013920	MEX3A (ENSCJPG00005013921) #24	LMNA (ENSCJPG00005013923) #25	SEMA4A (ENSCJPG00005013924) #26	SLC25A44 (ENSCJPG00005013925) #27	ENSCJPG00005013926	SMG5 (ENSCJPG00005013927) #31	TMEM79 (ENSCJPG00005013928)	GLMP (ENSCJPG00005013929) #33	CCT3 (ENSCJPG00005013930) #34	PEX19 (ENSCJPG00005013931)	ENSCJPG00005013932	PEA15 (ENSCJPG00005013933)	CASQ1 (ENSCJPG00005013934)
Neognathae_b	ANCESTRAL SPECIES	33	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000005125 #20
Neognathae_c	ANCESTRAL SPECIES	33	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b.z	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509.c #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT00390000005131 #33	ENSGT00570000079224 #34	ENSGT00390000005125 #20	ENSGT01030000234542.b.a.a.a.b
Golden eagle	MODERN SPECIES	25	MRPL24 (ENSACCG00020001839)	METTL25B (ENSACCG00020001855)	ISG20L2 (ENSACCG00020001876)	CRABP2 (ENSACCG00020001890)	ENSACCG00020001921	ENSACCG00020001947	ENSACCG00020001960	BCAN (ENSACCG00020001979)	HAPLN2 (ENSACCG00020002002)	RHBG (ENSACCG00020002042) #36	MEF2D (ENSACCG00020002103) #37	IQGAP3 (ENSACCG00020002188)	NAXE (ENSACCG00020002232)	GPATCH4 (ENSACCG00020002248)	UBQLN4 (ENSACCG00020002302) #21	LAMTOR2 (ENSACCG00020002334) #22	RAB25 (ENSACCG00020002353) #23	ENSACCG00020002373	MEX3A (ENSACCG00020002384) #24	LMNA (ENSACCG00020002398) #25	SEMA4A (ENSACCG00020002423) #26	SLC25A44 (ENSACCG00020002449) #27	ENSACCG00020002471	ENSACCG00020002491 #29	PAQR6 (ENSACCG00020002533) #30	SMG5 (ENSACCG00020002562) #31	TMEM79 (ENSACCG00020002589)	GLMP (ENSACCG00020002603) #33	CCT3 (ENSACCG00020002624) #34	SSR2 (ENSACCG00020002642) #20	TPM3 (ENSACCG00020002664)
Kakapo	MODERN SPECIES	60	CRABP2 (ENSSHBG00005016949)	ENSSHBG00005016942	ENSSHBG00005016935	ENSSHBG00005016928	BCAN (ENSSHBG00005016921)	HAPLN2 (ENSSHBG00005016914)	RHBG (ENSSHBG00005016897) #36	MEF2D (ENSSHBG00005016873) #37	ENSSHBG00005016853	ENSSHBG00005016844	ENSSHBG00005016834	ENSSHBG00005016829	NAXE (ENSSHBG00005016822)	GPATCH4 (ENSSHBG00005016818)	UBQLN4 (ENSSHBG00005016810) #21	LAMTOR2 (ENSSHBG00005016803) #22	RAB25 (ENSSHBG00005016798) #23	ENSSHBG00005016791	MEX3A (ENSSHBG00005016781) #24	LMNA (ENSSHBG00005016768) #25	ENSSHBG00005016763 #26	ENSSHBG00005016749 #26	SLC25A44 (ENSSHBG00005016737) #27	PMF1 (ENSSHBG00005016733) #28	BGLAP (ENSSHBG00005016730) #29	SMG5 (ENSSHBG00005015374) #31	TMEM79 (ENSSHBG00005015292)	CCT3 (ENSSHBG00005015253) #34	SSR2 (ENSSHBG00005015244) #20	APH1A (ENSSHBG00005015233)	ENSSHBG00005015053
Passeriformes	ANCESTRAL SPECIES	37	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000154566 #31	ENSGT00390000002390.b	ENSGT01030000234542.b.a.a.a.b	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b	ENSGT00390000018324
Passeriformes_d	ANCESTRAL SPECIES	26	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000154566.i #31	ENSGT00390000002390.b	ENSGT01030000234542.b.a.a.a.b	ENSGT01090000262236	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b
Flycatcher	MODERN SPECIES	17	MRPL24 (ENSFALG00000003167)	ENSFALG00000028907	ENSFALG00000023585	CRABP2 (ENSFALG00000003205)	ENSFALG00000003229	ENSFALG00000028936	ENSFALG00000025964	ENSFALG00000003292	ENSFALG00000028856	RHBG (ENSFALG00000003358) #36	MEF2D (ENSFALG00000013606) #37	IQGAP3 (ENSFALG00000002642)	ENSFALG00000002636	NAXE (ENSFALG00000002625)	UBQLN4 (ENSFALG00000002609) #21	LAMTOR2 (ENSFALG00000002604) #22	RAB25 (ENSFALG00000002597) #23	ENSFALG00000002594	MEX3A (ENSFALG00000014982) #24	LMNA (ENSFALG00000002586) #25	SEMA4A (ENSFALG00000002573) #26	SLC25A44 (ENSFALG00000002568) #27	PMF1 (ENSFALG00000028987) #28	ENSFALG00000024781 #29	ENSFALG00000002560 #31	ENSFALG00000002555 #20	ENSFALG00000002550 #34	ENSFALG00000024237	ENSFALG00000024658	ENSFALG00000024050	FLAD1 (ENSFALG00000001270)
Passeriformes_g	ANCESTRAL SPECIES	27	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000154566.i #31	ENSGT00390000002390.b	ENSGT01030000234542.b.a.a.a.b	ENSGT01090000262236	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b
Medium ground finch	MODERN SPECIES	247				ENSGFOG00000010020	ENSGFOG00000010024	ENSGFOG00000010028	ENSGFOG00000010037	BCAN (ENSGFOG00000010058)	HAPLN2 (ENSGFOG00000010066)	RHBG (ENSGFOG00000010070) #36	MEF2D (ENSGFOG00000010083) #37	IQGAP3 (ENSGFOG00000010097)	ENSGFOG00000010121	NAXE (ENSGFOG00000010126)	UBQLN4 (ENSGFOG00000010134) #21	LAMTOR2 (ENSGFOG00000010143) #22	RAB25 (ENSGFOG00000010146) #23	ENSGFOG00000010153	MEX3A (ENSGFOG00000010158) #24	LMNA (ENSGFOG00000010161) #25	SEMA4A (ENSGFOG00000010172) #26	SLC25A44 (ENSGFOG00000010182) #27	SMG5 (ENSGFOG00000010189) #31	TMEM79 (ENSGFOG00000010207)	TPM3 (ENSGFOG00000010212)	C1orf43 (ENSGFOG00000010231)	UBAP2L (ENSGFOG00000010247)	ENSGFOG00000010280	AQP10 (ENSGFOG00000010284)	ATP8B2 (ENSGFOG00000010292)	IL6R (ENSGFOG00000010325)
Passeroidea	ANCESTRAL SPECIES	28	ENSGT00940000157485	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000154566.i #31	ENSGT00390000002390.b	ENSGT01030000234542.b.a.a.a.b	ENSGT01090000262236	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b
Zebra finch	MODERN SPECIES	18	METTL25B (ENSTGUG00000024904)	ISG20L2 (ENSTGUG00000028521)	CRABP2 (ENSTGUG00000025174)	ENSTGUG00000024389	ENSTGUG00000022793	ENSTGUG00000026517	BCAN (ENSTGUG00000023506)	HAPLN2 (ENSTGUG00000025869)	RHBG (ENSTGUG00000003473) #36	MEF2D (ENSTGUG00000003481) #37	IQGAP3 (ENSTGUG00000003501)	ENSTGUG00000003613	NAXE (ENSTGUG00000003621)	ENSTGUG00000003636	UBQLN4 (ENSTGUG00000003644) #21	LAMTOR2 (ENSTGUG00000003670) #22	RAB25 (ENSTGUG00000003675) #23	ENSTGUG00000003680	MEX3A (ENSTGUG00000003692) #24	LMNA (ENSTGUG00000015888) #25	SEMA4A (ENSTGUG00000003695) #26	ENSTGUG00000018930	SLC25A44 (ENSTGUG00000015885) #27	ENSTGUG00000024980 #28	BGLAP (ENSTGUG00000003747) #29	SMG5 (ENSTGUG00000003748) #31	TMEM79 (ENSTGUG00000022613)	TPM3 (ENSTGUG00000003785)	ENSTGUG00000029068	UBAP2L (ENSTGUG00000003834)	HAX1 (ENSTGUG00000003919)
Common canary	MODERN SPECIES	81						ENSSCAG00000014510	ENSSCAG00000014506	ENSSCAG00000014502	HAPLN2 (ENSSCAG00000014493)	RHBG (ENSSCAG00000014483) #36	MEF2D (ENSSCAG00000014461) #37	IQGAP3 (ENSSCAG00000013560)	NAXE (ENSSCAG00000013155)	ENSSCAG00000013149	UBQLN4 (ENSSCAG00000013141) #21	LAMTOR2 (ENSSCAG00000013138) #22	RAB25 (ENSSCAG00000013131) #23	ENSSCAG00000013124	MEX3A (ENSSCAG00000013118) #24	LMNA (ENSSCAG00000013107) #25	SEMA4A (ENSSCAG00000013096) #26	SLC25A44 (ENSSCAG00000013089) #27	PMF1 (ENSSCAG00000013084) #28	BGLAP (ENSSCAG00000013078) #29	SMG5 (ENSSCAG00000013067) #31	TMEM79 (ENSSCAG00000013060)	ENSSCAG00000013039	C1orf43 (ENSSCAG00000013023)	UBAP2L (ENSSCAG00000012983)	HAX1 (ENSSCAG00000012964)	AQP10 (ENSSCAG00000012955)