Rodentia	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224 #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a	ENSGT00940000159463
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224 #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a	ENSGT00940000159463
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224 #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a	ENSGT00940000159463
Muroidea	ANCESTRAL SPECIES	6	ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224 #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a	ENSGT00940000159463
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224 #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a	ENSGT00940000159463
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b.u #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224 #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a	ENSGT00940000159463
Mus	ANCESTRAL SPECIES	7	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b.u #9	ENSGT00900000141033.b.b.v #10	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224 #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a.b	ENSGT00950000182844.b.b.a.a
Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b.u #9	ENSGT00900000141033.b.b.v #10	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131.e #35	ENSGT00570000079224 #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a.b	ENSGT00950000182844.b.b.a.a
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b.u #9	ENSGT00900000141033.b.b.v #10	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131.e #35	ENSGT00570000079224 #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a.b	ENSGT00950000182844.b.b.a.a
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b.u #9	ENSGT00900000141033.b.b.v #10	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131.e #35	ENSGT00570000079224 #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a.b	ENSGT00950000182844.b.b.a.a
spretus	MODERN SPECIES	12	Pklr (MGP_SPRETEiJ_G0026130) #7	Fdps (MGP_SPRETEiJ_G0026129) #8	Rusc1 (MGP_SPRETEiJ_G0026128) #9	MGP_SPRETEiJ_G0026127 #10	Ash1l (MGP_SPRETEiJ_G0026126) #11	Dap3 (MGP_SPRETEiJ_G0026125) #12	Msto1 (MGP_SPRETEiJ_G0026124) #13	Gon4l (MGP_SPRETEiJ_G0026123) #14	Syt11 (MGP_SPRETEiJ_G0026122) #15	Rit1 (MGP_SPRETEiJ_G0026121) #16	Khdc4 (MGP_SPRETEiJ_G0026120) #17	Rxfp4 (MGP_SPRETEiJ_G0026119) #18	Arhgef2 (MGP_SPRETEiJ_G0026118) #19	Ssr2 (MGP_SPRETEiJ_G0026117) #20	Ubqln4 (MGP_SPRETEiJ_G0026116) #21	Lamtor2 (MGP_SPRETEiJ_G0026115) #22	Rab25 (MGP_SPRETEiJ_G0026114) #23	MGP_SPRETEiJ_G0026113 #24	Lmna (MGP_SPRETEiJ_G0026112) #25	Sema4a (MGP_SPRETEiJ_G0026111) #26	Slc25a44 (MGP_SPRETEiJ_G0026110) #27	Pmf1 (MGP_SPRETEiJ_G0026109) #28	MGP_SPRETEiJ_G0026107 #29	MGP_SPRETEiJ_G0026108 #30	MGP_SPRETEiJ_G0026106 #31	Paqr6 (MGP_SPRETEiJ_G0026105) #32	Smg5 (MGP_SPRETEiJ_G0026104) #33	Tmem79 (MGP_SPRETEiJ_G0026103) #34	Glmp (MGP_SPRETEiJ_G0026102) #35	Cct3 (MGP_SPRETEiJ_G0026101) #36	Tsacc (MGP_SPRETEiJ_G0026100) #37
Steppe mouse	MODERN SPECIES	2494									Syt11 (ENSMSIG00000028436) #15	Rit1 (ENSMSIG00000028448) #16	Khdc4 (ENSMSIG00000028451) #17	ENSMSIG00000028469	Arhgef2 (ENSMSIG00000028473) #19	Ssr2 (ENSMSIG00000029173) #20	Ubqln4 (ENSMSIG00000029187) #21	Lamtor2 (ENSMSIG00000029190) #22	Rab25 (ENSMSIG00000029192) #23	ENSMSIG00000029193 #24	Lmna (ENSMSIG00000029196) #25	Sema4a (ENSMSIG00000029207) #26	ENSMSIG00000029223	Slc25a44 (ENSMSIG00000029225) #27	Pmf1 (ENSMSIG00000029235) #28	ENSMSIG00000029238 #29	ENSMSIG00000029245 #32	Smg5 (ENSMSIG00000029250) #33	Tmem79 (ENSMSIG00000029273) #34	Glmp (ENSMSIG00000029280) #35	Cct3 (ENSMSIG00000029307) #36	ENSMSIG00000029349 #37
Mouse	MODERN SPECIES	12	Hcn3 (ENSMUSG00000028051)	Pklr (ENSMUSG00000041237) #7	Fdps (ENSMUSG00000059743) #8	Rusc1 (ENSMUSG00000041263) #9	Ash1l (ENSMUSG00000028053) #11	Dap3 (ENSMUSG00000068921) #12	Msto1 (ENSMUSG00000068922) #13	Gon4l (ENSMUSG00000054199) #14	Syt11 (ENSMUSG00000068923) #15	Rit1 (ENSMUSG00000028057) #16	Khdc4 (ENSMUSG00000028060) #17	Rxfp4 (ENSMUSG00000049741) #18	Arhgef2 (ENSMUSG00000028059) #19	Ssr2 (ENSMUSG00000041355) #20	Ubqln4 (ENSMUSG00000008604) #21	Lamtor2 (ENSMUSG00000028062) #22	Rab25 (ENSMUSG00000008601) #23	Mex3a (ENSMUSG00000074480) #24	Lmna (ENSMUSG00000028063) #25	Sema4a (ENSMUSG00000028064) #26	Slc25a44 (ENSMUSG00000050144) #27	Pmf1 (ENSMUSG00000028066) #28	Bglap (ENSMUSG00000074483) #29	Bglap2 (ENSMUSG00000074486) #29	Bglap3 (ENSMUSG00000074489) #29	Paqr6 (ENSMUSG00000041423) #32	Smg5 (ENSMUSG00000001415) #33	Tmem79 (ENSMUSG00000001420) #34	Glmp (ENSMUSG00000001418) #35	Cct3 (ENSMUSG00000001416) #36	Tsacc (ENSMUSG00000010538) #37
Ryukyu mouse	MODERN SPECIES	12	Pklr (MGP_CAROLIEiJ_G0025187) #7	Fdps (MGP_CAROLIEiJ_G0025186) #8	Rusc1 (MGP_CAROLIEiJ_G0025185) #9	MGP_CAROLIEiJ_G0025184 #10	Ash1l (MGP_CAROLIEiJ_G0025183) #11	Dap3 (MGP_CAROLIEiJ_G0025182) #12	Msto1 (MGP_CAROLIEiJ_G0025181) #13	MGP_CAROLIEiJ_G0025180 #14	Syt11 (MGP_CAROLIEiJ_G0025179) #15	Rit1 (MGP_CAROLIEiJ_G0025178) #16	Khdc4 (MGP_CAROLIEiJ_G0025177) #17	Rxfp4 (MGP_CAROLIEiJ_G0025176) #18	Arhgef2 (MGP_CAROLIEiJ_G0025175) #19	Ssr2 (MGP_CAROLIEiJ_G0025174) #20	Ubqln4 (MGP_CAROLIEiJ_G0025173) #21	Lamtor2 (MGP_CAROLIEiJ_G0025172) #22	Rab25 (MGP_CAROLIEiJ_G0025171) #23	Mex3a (MGP_CAROLIEiJ_G0025170) #24	Lmna (MGP_CAROLIEiJ_G0025169) #25	Sema4a (MGP_CAROLIEiJ_G0025168) #26	Slc25a44 (MGP_CAROLIEiJ_G0025167) #27	Pmf1 (MGP_CAROLIEiJ_G0025166) #28	MGP_CAROLIEiJ_G0025165 #29	Paqr6 (MGP_CAROLIEiJ_G0025164) #32	Smg5 (MGP_CAROLIEiJ_G0025163) #33	Tmem79 (MGP_CAROLIEiJ_G0025162) #34	Glmp (MGP_CAROLIEiJ_G0025161) #35	Cct3 (MGP_CAROLIEiJ_G0025160) #36	Tsacc (MGP_CAROLIEiJ_G0025159) #37	MGP_CAROLIEiJ_G0025158	Rhbg (MGP_CAROLIEiJ_G0025157)
Shrew mouse	MODERN SPECIES	17	Hcn3 (MGP_PahariEiJ_G0026632)	Pklr (MGP_PahariEiJ_G0026631) #7	Fdps (MGP_PahariEiJ_G0026630) #8	Rusc1 (MGP_PahariEiJ_G0026629) #9	MGP_PahariEiJ_G0026628 #10	Ash1l (MGP_PahariEiJ_G0026627) #11	Dap3 (MGP_PahariEiJ_G0026626) #12	MGP_PahariEiJ_G0026625 #13	Gon4l (MGP_PahariEiJ_G0026624) #14	Syt11 (MGP_PahariEiJ_G0026623) #15	Rit1 (MGP_PahariEiJ_G0026622) #16	Khdc4 (MGP_PahariEiJ_G0026621) #17	Arhgef2 (MGP_PahariEiJ_G0026620) #19	Ssr2 (MGP_PahariEiJ_G0026619) #20	Ubqln4 (MGP_PahariEiJ_G0026618) #21	Lamtor2 (MGP_PahariEiJ_G0026617) #22	Rab25 (MGP_PahariEiJ_G0026616) #23	Mex3a (MGP_PahariEiJ_G0026615) #24	Lmna (MGP_PahariEiJ_G0026614) #25	Sema4a (MGP_PahariEiJ_G0026613) #26	Slc25a44 (MGP_PahariEiJ_G0026612) #27	Pmf1 (MGP_PahariEiJ_G0026611) #28	MGP_PahariEiJ_G0026609 #29	MGP_PahariEiJ_G0026610 #29	Paqr6 (MGP_PahariEiJ_G0026607) #32	Smg5 (MGP_PahariEiJ_G0026606) #33	Tmem79 (MGP_PahariEiJ_G0026605) #34	Glmp (MGP_PahariEiJ_G0026604) #35	MGP_PahariEiJ_G0026603 #36	Tsacc (MGP_PahariEiJ_G0026602) #37	MGP_PahariEiJ_G0026601
Rat	DUPLICATION
Rat	MODERN SPECIES	17	OR6c8 (ENSRNOG00000043334)	Or6c63 (ENSRNOG00000043299)	Or10p22 (ENSRNOG00000064513)	Olr876 (ENSRNOG00000067859)	Mettl7b (ENSRNOG00000007927)	Itga7 (ENSRNOG00000007905)	Bloc1s1 (ENSRNOG00000007784)	Cd63 (ENSRNOG00000007650)	Gdf11 (ENSRNOG00000007610)	Sarnp (ENSRNOG00000030520)	Ormdl2 (ENSRNOG00000030120)	Dnajc14 (ENSRNOG00000006844)	Tmem198b (ENSRNOG00000006827)	Mmp19 (ENSRNOG00000006778)	Pym1 (ENSRNOG00000058130)	ENSRNOG00000066475 #22	Dgka (ENSRNOG00000022943)	Pmel (ENSRNOG00000023085)	Cdk2 (ENSRNOG00000006469)	Rab5b (ENSRNOG00000006130)	Suox (ENSRNOG00000005987)	Ikzf4 (ENSRNOG00000005535)	Erbb3 (ENSRNOG00000004964)	Pa2g4 (ENSRNOG00000004904)	Zc3h10 (ENSRNOG00000040281)	Rps15-ps2 (ENSRNOG00000043026)	Esyt1 (ENSRNOG00000060753)	LOC120093525 (ENSRNOG00000028837)	Myl6 (ENSRNOG00000054140)	Smarcc2 (ENSRNOG00000031135)	Rnf41 (ENSRNOG00000023456)
Rat	MODERN SPECIES	11	Entrep3 (ENSRNOG00000020518)	Scamp3 (ENSRNOG00000020500)	Hcn3 (ENSRNOG00000020444)	Pklr (ENSRNOG00000020420) #7	Fdps (ENSRNOG00000043377) #9	Ash1l (ENSRNOG00000020386) #11	Dap3 (ENSRNOG00000020373) #12	Msto1 (ENSRNOG00000020357) #13	Gon4l (ENSRNOG00000020297) #14	Syt11 (ENSRNOG00000020279) #15	Rit1 (ENSRNOG00000064584) #16	Khdc4 (ENSRNOG00000020139) #17	Arhgef2 (ENSRNOG00000020027) #19	Ssr2 (ENSRNOG00000019940) #20	Ubqln4 (ENSRNOG00000019933) #21	Lamtor2 (ENSRNOG00000019908) #22	Rab25 (ENSRNOG00000023640) #23	Mex3a (ENSRNOG00000058654) #24	Lmna (ENSRNOG00000019638) #25	Sema4a (ENSRNOG00000019737) #26	Slc25a44 (ENSRNOG00000025269) #27	Pmf1 (ENSRNOG00000019620) #28	Bglap (ENSRNOG00000019607) #29	Paqr6 (ENSRNOG00000026059) #32	Smg5 (ENSRNOG00000019590) #33	Tmem79 (ENSRNOG00000019414) #34	Glmp (ENSRNOG00000019281) #35	Cct3 (ENSRNOG00000019090) #36	Tsacc (ENSRNOG00000037552) #37	Rhbg (ENSRNOG00000019412)	Mef2d (ENSRNOG00000031778)
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224.x #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a	ENSGT00940000159463
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224.x #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a	ENSGT00940000159463
Northern American deer mouse	MODERN SPECIES	19	Hcn3 (ENSPEMG00000009033)	Pklr (ENSPEMG00000010915) #7	Fdps (ENSPEMG00000030569) #8	Rusc1 (ENSPEMG00000018232) #9	Ash1l (ENSPEMG00000006789) #11	ENSPEMG00000019185 #12	Msto1 (ENSPEMG00000016178) #13	Gon4l (ENSPEMG00000017252) #14	Syt11 (ENSPEMG00000003809) #15	Rit1 (ENSPEMG00000030433) #16	Khdc4 (ENSPEMG00000007794) #17	Rxfp4 (ENSPEMG00000011662) #18	Arhgef2 (ENSPEMG00000002997) #19	Ssr2 (ENSPEMG00000012464) #20	Ubqln4 (ENSPEMG00000016759) #21	Lamtor2 (ENSPEMG00000009818) #22	Rab25 (ENSPEMG00000007548) #23	Mex3a (ENSPEMG00000019014) #24	Lmna (ENSPEMG00000015821) #25	Sema4a (ENSPEMG00000015516) #26	Slc25a44 (ENSPEMG00000013362) #27	Pmf1 (ENSPEMG00000012625) #28	ENSPEMG00000025586 #29	Paqr6 (ENSPEMG00000002777) #32	Smg5 (ENSPEMG00000001819) #33	Tmem79 (ENSPEMG00000007739) #34	Glmp (ENSPEMG00000013529) #35	Cct3 (ENSPEMG00000015732) #36	Tsacc (ENSPEMG00000014593) #37	Rhbg (ENSPEMG00000011996)	Mef2d (ENSPEMG00000019035)
Prairie vole	MODERN SPECIES	8											ENSMOCG00000007816 #17	ENSMOCG00000019234 #19	ENSMOCG00000020991 #19	Ssr2 (ENSMOCG00000001890) #20	ENSMOCG00000013140 #21	Lamtor2 (ENSMOCG00000018988) #22	Rab25 (ENSMOCG00000010953) #23	Mex3a (ENSMOCG00000017881) #24	Lmna (ENSMOCG00000011854) #25	Sema4a (ENSMOCG00000022467) #26	Slc25a44 (ENSMOCG00000014671) #27	ENSMOCG00000018426 #28	ENSMOCG00000019680 #29	Paqr6 (ENSMOCG00000006437) #32	Smg5 (ENSMOCG00000016590) #33	Tmem79 (ENSMOCG00000017414) #34	Glmp (ENSMOCG00000009096) #35	Cct3 (ENSMOCG00000010144) #36	Tsacc (ENSMOCG00000013419) #37	ENSMOCG00000022002	Rhbg (ENSMOCG00000005326)
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224.x #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a	ENSGT00940000159463
Chinese hamster chok1gshd	MODERN SPECIES	352	Pklr (ENSCGRG00001023372) #7	ENSCGRG00001023534	Fdps (ENSCGRG00001025003) #8	Rusc1 (ENSCGRG00001009459) #9	Ash1l (ENSCGRG00001011192) #11	Dap3 (ENSCGRG00001022521) #12	Msto1 (ENSCGRG00001015681) #13	Gon4l (ENSCGRG00001023253) #14	Syt11 (ENSCGRG00001023824) #15	Rit1 (ENSCGRG00001004542) #16	Khdc4 (ENSCGRG00001012564) #17	Rxfp4 (ENSCGRG00001002374) #18	Arhgef2 (ENSCGRG00001006987) #19	Ssr2 (ENSCGRG00001006822) #20	Ubqln4 (ENSCGRG00001019653) #21	Lamtor2 (ENSCGRG00001008748) #22	Rab25 (ENSCGRG00001017341) #23	Mex3a (ENSCGRG00001000412) #24	Lmna (ENSCGRG00001003129) #25	Sema4a (ENSCGRG00001020918) #26	Slc25a44 (ENSCGRG00001021651) #27	Pmf1 (ENSCGRG00001010918) #28	ENSCGRG00001014532 #29	Paqr6 (ENSCGRG00001016796) #32	Smg5 (ENSCGRG00001006336) #33	Tmem79 (ENSCGRG00001024551) #34	Glmp (ENSCGRG00001007094) #35	Cct3 (ENSCGRG00001015935) #36	Tsacc (ENSCGRG00001019825) #37	Rhbg (ENSCGRG00001000730)	Mef2d (ENSCGRG00001013661)
Golden Hamster	MODERN SPECIES	714	Clk2 (ENSMAUG00000016789)	Hcn3 (ENSMAUG00000017469)	Pklr (ENSMAUG00000012808) #7	Fdps (ENSMAUG00000020872) #8	ENSMAUG00000017088 #9	Ash1l (ENSMAUG00000000702) #11	Msto1 (ENSMAUG00000020345) #13	ENSMAUG00000000631 #14	ENSMAUG00000013419 #15	Rit1 (ENSMAUG00000000572) #16	Khdc4 (ENSMAUG00000019676) #17	ENSMAUG00000013645 #19	ENSMAUG00000019940 #19	Ssr2 (ENSMAUG00000021161) #20	Ubqln4 (ENSMAUG00000007686) #21	Lamtor2 (ENSMAUG00000000547) #22	Mex3a (ENSMAUG00000012601) #24	Lmna (ENSMAUG00000012838) #25	ENSMAUG00000017061 #26	Slc25a44 (ENSMAUG00000021047) #27	Pmf1 (ENSMAUG00000019629) #28	ENSMAUG00000015288 #29	Paqr6 (ENSMAUG00000010297) #32	Smg5 (ENSMAUG00000010381) #33	Tmem79 (ENSMAUG00000014791) #34	ENSMAUG00000014449 #36	Tsacc (ENSMAUG00000016723) #37	Rhbg (ENSMAUG00000009341)	Mef2d (ENSMAUG00000016452)	Iqgap3 (ENSMAUG00000008455)	ENSMAUG00000018760
Upper Galilee mountains blind mole rat	MODERN SPECIES	497	Clk2 (ENSNGAG00000022518)	Hcn3 (ENSNGAG00000021908)	Pklr (ENSNGAG00000019876) #7	Rusc1 (ENSNGAG00000008260) #9	Ash1l (ENSNGAG00000021986) #11	Dap3 (ENSNGAG00000014173) #12	Msto1 (ENSNGAG00000022769) #13	Gon4l (ENSNGAG00000020844) #14	Syt11 (ENSNGAG00000013529) #15	Rit1 (ENSNGAG00000013104) #16	Khdc4 (ENSNGAG00000012421) #17	ENSNGAG00000011350 #19	ENSNGAG00000009107 #19	Ssr2 (ENSNGAG00000002859) #20	Ubqln4 (ENSNGAG00000020831) #21	Lamtor2 (ENSNGAG00000020249) #22	Rab25 (ENSNGAG00000019999) #23	Mex3a (ENSNGAG00000019587) #24	Lmna (ENSNGAG00000017368) #25	Sema4a (ENSNGAG00000012750) #26	Slc25a44 (ENSNGAG00000010575) #27	Pmf1 (ENSNGAG00000007750) #28	ENSNGAG00000001625 #29	Paqr6 (ENSNGAG00000000673) #32	Smg5 (ENSNGAG00000020706) #33	Tmem79 (ENSNGAG00000020294) #34	Glmp (ENSNGAG00000019347) #35	Cct3 (ENSNGAG00000016875) #36	Rhbg (ENSNGAG00000019322)	Mef2d (ENSNGAG00000016036)	Iqgap3 (ENSNGAG00000020879)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	141	Hcn3 (ENSJJAG00000017693)	Pklr (ENSJJAG00000019099) #7	Rusc1 (ENSJJAG00000001429) #9	Ash1l (ENSJJAG00000017942) #11	Dap3 (ENSJJAG00000010235) #12	Msto1 (ENSJJAG00000019140) #13	ENSJJAG00000013614 #14	ENSJJAG00000010636 #15	Rit1 (ENSJJAG00000023411) #16	ENSJJAG00000020627 #17	Rxfp4 (ENSJJAG00000013686) #18	ENSJJAG00000017646 #19	ENSJJAG00000016067 #19	Ssr2 (ENSJJAG00000024209) #20	Ubqln4 (ENSJJAG00000002118) #21	ENSJJAG00000021135 #22	Rab25 (ENSJJAG00000021013) #23	Mex3a (ENSJJAG00000020484) #24	Lmna (ENSJJAG00000019904) #25	Sema4a (ENSJJAG00000016229) #26	Slc25a44 (ENSJJAG00000001462) #27	Pmf1 (ENSJJAG00000013470) #28	ENSJJAG00000000652 #29	Paqr6 (ENSJJAG00000001367) #32	Smg5 (ENSJJAG00000022763) #33	Tmem79 (ENSJJAG00000023610) #34	ENSJJAG00000019201	Cct3 (ENSJJAG00000013939) #36	ENSJJAG00000017067	Mef2d (ENSJJAG00000011790)	Iqgap3 (ENSJJAG00000000649)
Lesser Egyptian jerboa	MODERN SPECIES	61	ENSJJAG00000014352	Smc2 (ENSJJAG00000024156)	ENSJJAG00000009857	ENSJJAG00000023304	Grin3a (ENSJJAG00000023914)	Rnf20 (ENSJJAG00000022147)	Aldob (ENSJJAG00000017193)	Zfp189 (ENSJJAG00000017677)	Mrpl50 (ENSJJAG00000015402)	Baat (ENSJJAG00000015081)	ENSJJAG00000022423	ENSJJAG00000023201	Plppr1 (ENSJJAG00000014625)	ENSJJAG00000018538	Cavin4 (ENSJJAG00000013719)	ENSJJAG00000011421 #22	ENSJJAG00000016219	Msantd3 (ENSJJAG00000019733)	Tex10 (ENSJJAG00000017725)	Invs (ENSJJAG00000020388)	Erp44 (ENSJJAG00000016276)	Stx17 (ENSJJAG00000014957)	Nr4a3 (ENSJJAG00000004481)	ENSJJAG00000003174	Alg2 (ENSJJAG00000004353)	Tgfbr1 (ENSJJAG00000008037)	ENSJJAG00000023162	Galnt12 (ENSJJAG00000008989)	Anks6 (ENSJJAG00000018199)	Tbc1d2 (ENSJJAG00000019681)	Coro2a (ENSJJAG00000022571)
Kangaroo rat	MODERN SPECIES	345	Pklr (ENSDORG00000011632) #7	ENSDORG00000028002	Fdps (ENSDORG00000005366) #8	ENSDORG00000024404 #9	ENSDORG00000025813 #9	Ash1l (ENSDORG00000025575) #11	Dap3 (ENSDORG00000003596) #12	Msto1 (ENSDORG00000029541) #13	Gon4l (ENSDORG00000003598) #14	Syt11 (ENSDORG00000023709) #15	Rit1 (ENSDORG00000014601) #16	Khdc4 (ENSDORG00000014602) #17	Arhgef2 (ENSDORG00000012162) #19	ENSDORG00000010536 #20	Ubqln4 (ENSDORG00000010538) #21	Lamtor2 (ENSDORG00000002923) #22	Rab25 (ENSDORG00000002922) #23	Mex3a (ENSDORG00000002921) #24	Lmna (ENSDORG00000002470) #25	Sema4a (ENSDORG00000008821) #26
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224 #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a	ENSGT00940000159463
Hystricomorpha	ANCESTRAL SPECIES	45	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224.z.a #36	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	54	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224.y #36	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Guinea pig	MODERN SPECIES	10	HCN3 (ENSCPOG00000027026)	PKLR (ENSCPOG00000011202) #7	FDPS (ENSCPOG00000015363) #8	RUSC1 (ENSCPOG00000032934) #9	ASH1L (ENSCPOG00000004801) #11	DAP3 (ENSCPOG00000030924) #12	MSTO1 (ENSCPOG00000004857) #13	ENSCPOG00000004859 #14	SYT11 (ENSCPOG00000004866) #15	RIT1 (ENSCPOG00000004868) #16	KHDC4 (ENSCPOG00000004870) #17	ENSCPOG00000032356	ARHGEF2 (ENSCPOG00000025396) #19	SSR2 (ENSCPOG00000023729) #20	UBQLN4 (ENSCPOG00000002467) #21	LAMTOR2 (ENSCPOG00000032238) #22	RAB25 (ENSCPOG00000002472) #23	MEX3A (ENSCPOG00000020219) #24	LMNA (ENSCPOG00000023214) #25	SEMA4A (ENSCPOG00000015694) #26	SLC25A44 (ENSCPOG00000021129) #27	PMF1 (ENSCPOG00000015695) #28	BGLAP (ENSCPOG00000040505) #29	PAQR6 (ENSCPOG00000019726) #32	SMG5 (ENSCPOG00000015696) #33	TMEM79 (ENSCPOG00000033881) #34	GLMP (ENSCPOG00000032634) #35	CCT3 (ENSCPOG00000009131) #36	RHBG (ENSCPOG00000011135)	MEF2D (ENSCPOG00000036656)	IQGAP3 (ENSCPOG00000005361)
Hystricomorpha_b	ANCESTRAL SPECIES	61	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224.z.a #36	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Degu	MODERN SPECIES	73	PKLR (ENSODEG00000011272) #7	FDPS (ENSODEG00000010515) #8	ENSODEG00000010812 #9	ASH1L (ENSODEG00000009920) #11	DAP3 (ENSODEG00000010674) #12	MSTO1 (ENSODEG00000011191) #13	ENSODEG00000010737	ENSODEG00000011008 #14	SYT11 (ENSODEG00000010870) #15	RIT1 (ENSODEG00000010128) #16	ENSODEG00000009528 #17	ENSODEG00000019992	ARHGEF2 (ENSODEG00000011373) #19	SSR2 (ENSODEG00000010659) #20	UBQLN4 (ENSODEG00000010901) #21	LAMTOR2 (ENSODEG00000010141) #22	RAB25 (ENSODEG00000009908) #23	MEX3A (ENSODEG00000009643) #24	LMNA (ENSODEG00000009369) #25	SEMA4A (ENSODEG00000009359) #26	SLC25A44 (ENSODEG00000009774) #27	PMF1 (ENSODEG00000011902) #28	BGLAP (ENSODEG00000010926) #29	PAQR6 (ENSODEG00000010747) #32	SMG5 (ENSODEG00000012237) #33	TMEM79 (ENSODEG00000012508) #34	GLMP (ENSODEG00000009800) #35	ENSODEG00000009974 #36	RHBG (ENSODEG00000009136)	MEF2D (ENSODEG00000010190)	IQGAP3 (ENSODEG00000010076)
Long-tailed chinchilla	MODERN SPECIES	252	CLK2 (ENSCLAG00000003873)	HCN3 (ENSCLAG00000005021)	PKLR (ENSCLAG00000005136) #7	FDPS (ENSCLAG00000005410) #8	RUSC1 (ENSCLAG00000005579) #9	ASH1L (ENSCLAG00000004536) #11	DAP3 (ENSCLAG00000005599) #12	MSTO1 (ENSCLAG00000006273) #13	ENSCLAG00000006556 #14	SYT11 (ENSCLAG00000013172) #15	RIT1 (ENSCLAG00000013305) #16	KHDC4 (ENSCLAG00000010544) #17	ARHGEF2 (ENSCLAG00000013596) #19	SSR2 (ENSCLAG00000003363) #20	UBQLN4 (ENSCLAG00000003519) #21	LAMTOR2 (ENSCLAG00000003700) #22	RAB25 (ENSCLAG00000003784) #23	MEX3A (ENSCLAG00000003842) #24	LMNA (ENSCLAG00000003894) #25	SEMA4A (ENSCLAG00000005297) #26	SLC25A44 (ENSCLAG00000005587) #27	PMF1 (ENSCLAG00000003672) #28	BGLAP (ENSCLAG00000003710) #29	PAQR6 (ENSCLAG00000003899) #32	SMG5 (ENSCLAG00000003983) #33	TMEM79 (ENSCLAG00000004142) #34	GLMP (ENSCLAG00000004192) #35	ENSCLAG00000004359 #36	RHBG (ENSCLAG00000004625)	MEF2D (ENSCLAG00000004702)	IQGAP3 (ENSCLAG00000004927)
Naked mole-rat female	MODERN SPECIES	10			ENSHGLG00000005618 #8	ENSHGLG00000006300 #9	ENSHGLG00000049863	ASH1L (ENSHGLG00000008090) #11	DAP3 (ENSHGLG00000013978) #12	MSTO1 (ENSHGLG00000018369) #13	ENSHGLG00000006556 #14	SYT11 (ENSHGLG00000032288) #15	ENSHGLG00000034706 #16	KHDC4 (ENSHGLG00000010495) #17	RXFP4 (ENSHGLG00000037004) #18	SSR2 (ENSHGLG00000035940) #20	UBQLN4 (ENSHGLG00000003684) #21	LAMTOR2 (ENSHGLG00000036352) #22	RAB25 (ENSHGLG00000005517) #23	MEX3A (ENSHGLG00000041429) #24	ENSHGLG00000036594 #25	SEMA4A (ENSHGLG00000003587) #26	SLC25A44 (ENSHGLG00000042222) #27	ENSHGLG00000007944 #29	PAQR6 (ENSHGLG00000015640) #32	SMG5 (ENSHGLG00000019152) #33	TMEM79 (ENSHGLG00000018185) #34	GLMP (ENSHGLG00000041332) #35	ENSHGLG00000003153 #36	RHBG (ENSHGLG00000005998)	MEF2D (ENSHGLG00000019055)	IQGAP3 (ENSHGLG00000018362)	NAXE (ENSHGLG00000007354)
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132.e #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224 #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a	ENSGT00940000159463
Eurasian red squirrel	MODERN SPECIES		CLK2 (ENSSVLG00005019777)	HCN3 (ENSSVLG00005000099)	PKLR (ENSSVLG00005000101) #7	FDPS (ENSSVLG00005000103) #8	RUSC1 (ENSSVLG00005000107) #9	ENSSVLG00005000118 #11	MSTO1 (ENSSVLG00005000136) #13	ENSSVLG00005000147 #14	ENSSVLG00005000171 #15	ENSSVLG00005000188 #16	KHDC4 (ENSSVLG00005000224) #17	RXFP4 (ENSSVLG00005000258) #18	ARHGEF2 (ENSSVLG00005000357) #19	SSR2 (ENSSVLG00005000552) #20	UBQLN4 (ENSSVLG00005000591) #21	LAMTOR2 (ENSSVLG00005000628) #22	RAB25 (ENSSVLG00005000653) #23	MEX3A (ENSSVLG00005000673) #24	LMNA (ENSSVLG00005000714) #25	SEMA4A (ENSSVLG00005000802) #26	SLC25A44 (ENSSVLG00005000872) #27	PMF1 (ENSSVLG00005000891) #28	BGLAP (ENSSVLG00005000913) #29	PAQR6 (ENSSVLG00005000936) #32	SMG5 (ENSSVLG00005000972) #33	ENSSVLG00005000998	GLMP (ENSSVLG00005001024) #35	CCT3 (ENSSVLG00005001076) #36	TSACC (ENSSVLG00005001124) #37	RHBG (ENSSVLG00005001146)	MEF2D (ENSSVLG00005001227)
Marmotini	ANCESTRAL SPECIES	33	ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132.e #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224 #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a	ENSGT00940000159463
Alpin marmot	MODERN SPECIES	85	HCN3 (ENSMMMG00000014457)	PKLR (ENSMMMG00000014412) #7	FDPS (ENSMMMG00000014395) #8	ENSMMMG00000014387 #9	ASH1L (ENSMMMG00000014324) #11	DAP3 (ENSMMMG00000014245) #12	MSTO1 (ENSMMMG00000014213) #13	ENSMMMG00000014163 #14	SYT11 (ENSMMMG00000014151) #15	ENSMMMG00000014145 #16	KHDC4 (ENSMMMG00000014104) #17	RXFP4 (ENSMMMG00000014101) #18	ARHGEF2 (ENSMMMG00000013899) #19	SSR2 (ENSMMMG00000013889) #20	UBQLN4 (ENSMMMG00000013874) #21	LAMTOR2 (ENSMMMG00000013864) #22	RAB25 (ENSMMMG00000013857) #23	MEX3A (ENSMMMG00000013855) #24	LMNA (ENSMMMG00000013831) #25	SEMA4A (ENSMMMG00000013785) #26	SLC25A44 (ENSMMMG00000013773) #27	ENSMMMG00000013758	BGLAP (ENSMMMG00000013734) #29	PAQR6 (ENSMMMG00000013724) #32	SMG5 (ENSMMMG00000013706) #33	TMEM79 (ENSMMMG00000013693) #34	GLMP (ENSMMMG00000013644) #35	CCT3 (ENSMMMG00000013571) #36	TSACC (ENSMMMG00000013564) #37	RHBG (ENSMMMG00000013553)	ENSMMMG00000013541
Marmotini_b	ANCESTRAL SPECIES	37	ENSGT00940000162023	ENSGT00390000008859.b.c #7	ENSGT00900000141074 #8	ENSGT00900000141033.b.b #9	ENSGT00940000156698 #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132.e #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b #18	ENSGT00940000158341 #19	ENSGT00390000005125 #20	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #32	ENSGT00940000154566 #33	ENSGT00390000002390.b #34	ENSGT00390000005131 #35	ENSGT00570000079224 #36	ENSGT00390000012524 #37	ENSGT00950000182844.b.b.a	ENSGT00940000159463
Squirrel	MODERN SPECIES	180	HCN3 (ENSSTOG00000008989)	PKLR (ENSSTOG00000022480) #7	ENSSTOG00000004475 #8	RUSC1 (ENSSTOG00000004516) #9	ASH1L (ENSSTOG00000019952) #11	DAP3 (ENSSTOG00000004627) #12	MSTO1 (ENSSTOG00000004655) #13	ENSSTOG00000004664 #14	SYT11 (ENSSTOG00000004720) #15	RIT1 (ENSSTOG00000021028) #16	KHDC4 (ENSSTOG00000004732) #17	RXFP4 (ENSSTOG00000000616) #18	ARHGEF2 (ENSSTOG00000000620) #19	SSR2 (ENSSTOG00000028971) #20	UBQLN4 (ENSSTOG00000020043) #21	LAMTOR2 (ENSSTOG00000023389) #22	RAB25 (ENSSTOG00000000634) #23	MEX3A (ENSSTOG00000024275) #24	LMNA (ENSSTOG00000001758) #25	SEMA4A (ENSSTOG00000028050) #26	SLC25A44 (ENSSTOG00000001764) #27	PMF1 (ENSSTOG00000001768) #28	ENSSTOG00000034466	BGLAP (ENSSTOG00000027908) #29	PAQR6 (ENSSTOG00000001772) #32	SMG5 (ENSSTOG00000001780) #33	TMEM79 (ENSSTOG00000026140) #34	GLMP (ENSSTOG00000015763) #35	CCT3 (ENSSTOG00000001798) #36	TSACC (ENSSTOG00000001810) #37	RHBG (ENSSTOG00000028396)
Arctic ground squirrel	MODERN SPECIES	309	HCN3 (ENSUPAG00010002732)	PKLR (ENSUPAG00010002743) #7	FDPS (ENSUPAG00010002775) #8	RUSC1 (ENSUPAG00010002787) #9	ASH1L (ENSUPAG00010002818) #11	ENSUPAG00010002886 #12	MSTO1 (ENSUPAG00010002943) #13	ENSUPAG00010002975 #14	SYT11 (ENSUPAG00010003045) #15	ENSUPAG00010003055 #16	KHDC4 (ENSUPAG00010003067) #17	ENSUPAG00010003101	ARHGEF2 (ENSUPAG00010003114) #19	SSR2 (ENSUPAG00010003598) #20	UBQLN4 (ENSUPAG00010003613) #21	LAMTOR2 (ENSUPAG00010003634) #22	RAB25 (ENSUPAG00010003640) #23	MEX3A (ENSUPAG00010003653) #24	LMNA (ENSUPAG00010003669) #25	SEMA4A (ENSUPAG00010003712) #26	SLC25A44 (ENSUPAG00010004013) #27	PMF1 (ENSUPAG00010004034) #28	BGLAP (ENSUPAG00010004045) #29	ENSUPAG00010004061 #32	SMG5 (ENSUPAG00010004091) #33	TMEM79 (ENSUPAG00010004129) #34	GLMP (ENSUPAG00010004142) #35	CCT3 (ENSUPAG00010004189) #36	TSACC (ENSUPAG00010004234) #37	RHBG (ENSUPAG00010004243)	MEF2D (ENSUPAG00010004263)