Chordata	ANCESTRAL SPECIES																	ENSGT00390000006100 #22
Vertebrata	ANCESTRAL SPECIES	464															ENSGT00550000075028	ENSGT00390000006100 #22
Gnathostomata	ANCESTRAL SPECIES	919															ENSGT00550000075028	ENSGT00390000006100 #22	ENSGT00940000158230 #23
Euteleostomi	ANCESTRAL SPECIES	303							ENSGT00940000159463	ENSGT00570000079224 #35	ENSGT00390000005131 #33	ENSGT00390000002390.b #32	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000162345	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000157244 #25
Sarcopterygii	ANCESTRAL SPECIES	49											ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00550000074827	ENSGT00940000157796	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327
Tetrapoda	ANCESTRAL SPECIES	41	ENSGT00940000157485	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19	ENSGT00940000158341 #18
Amniota	ANCESTRAL SPECIES	28	ENSGT00940000157485	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19	ENSGT00940000158341 #18
Mammalia	ANCESTRAL SPECIES	25	ENSGT00940000154947	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35
Theria	ANCESTRAL SPECIES	3	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Eutheria	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Primates	ANCESTRAL SPECIES	7	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00390000012642	ENSGT00900000141074.e.b	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000016256.l #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00390000012642	ENSGT00900000141074.e.b.b.b	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000016256.l #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Cebidae	ANCESTRAL SPECIES	12	ENSGT00390000012642	ENSGT00900000141074.e.b.b.b	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000016256.l #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT00900000141074.e.b.b.a.a.a	ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000016256.l #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Capuchin	MODERN SPECIES	427					YY1AP1 (ENSCCAG00000026983) #11	DAP3 (ENSCCAG00000033532) #12	MSTO1 (ENSCCAG00000035498) #13	GON4L (ENSCCAG00000037108) #14	SYT11 (ENSCCAG00000016634) #15	RIT1 (ENSCCAG00000037656) #16	KHDC4 (ENSCCAG00000023017) #17	ARHGEF2 (ENSCCAG00000029636) #18	SSR2 (ENSCCAG00000037436) #19	ENSCCAG00000029510 #20	UBQLN4 (ENSCCAG00000036689) #21	LAMTOR2 (ENSCCAG00000026308) #22	RAB25 (ENSCCAG00000021873) #23	MEX3A (ENSCCAG00000022351) #24	LMNA (ENSCCAG00000023432) #25	SEMA4A (ENSCCAG00000032806) #26	SLC25A44 (ENSCCAG00000026588) #27	PMF1 (ENSCCAG00000025850) #28	BGLAP (ENSCCAG00000020525) #29	PAQR6 (ENSCCAG00000027826) #30	SMG5 (ENSCCAG00000027409) #31	TMEM79 (ENSCCAG00000028389) #32	GLMP (ENSCCAG00000034620) #33	ENSCCAG00000011652 #34	CCT3 (ENSCCAG00000033998) #35	TSACC (ENSCCAG00000022149) #36	RHBG (ENSCCAG00000029159) #37
Bolivian squirrel monkey	MODERN SPECIES	136	ENSSBOG00000020002	ENSSBOG00000036252	RUSC1 (ENSSBOG00000020883)	ASH1L (ENSSBOG00000026764)	YY1AP1 (ENSSBOG00000029484) #11	DAP3 (ENSSBOG00000033972) #12	MSTO1 (ENSSBOG00000023864) #13	GON4L (ENSSBOG00000032520) #14	SYT11 (ENSSBOG00000035584) #15	RIT1 (ENSSBOG00000023350) #16	KHDC4 (ENSSBOG00000034469) #17	RXFP4 (ENSSBOG00000034710)	ARHGEF2 (ENSSBOG00000034006) #18	SSR2 (ENSSBOG00000020706) #19	UBQLN4 (ENSSBOG00000021728) #21	LAMTOR2 (ENSSBOG00000035732) #22	RAB25 (ENSSBOG00000032212) #23	MEX3A (ENSSBOG00000025317) #24	LMNA (ENSSBOG00000014857) #25	SEMA4A (ENSSBOG00000019443) #26	SLC25A44 (ENSSBOG00000020325) #27	PMF1 (ENSSBOG00000034025) #28	BGLAP (ENSSBOG00000026047) #29	PAQR6 (ENSSBOG00000036021) #30	SMG5 (ENSSBOG00000033339) #31	TMEM79 (ENSSBOG00000021483) #32	GLMP (ENSSBOG00000020411) #33	CCT3 (ENSSBOG00000035044) #35	TSACC (ENSSBOG00000020015) #36	RHBG (ENSSBOG00000035568) #37	ENSSBOG00000035567
Marmoset	MODERN SPECIES	9	ASH1L (ENSCJAG00000008157)	ENSCJAG00000081873	MSTO1 (ENSCJAG00000008092) #13	YY1AP1 (ENSCJAG00000042285) #11	DAP3 (ENSCJAG00000008125) #12	ENSCJAG00000063148 #13	GON4L (ENSCJAG00000007977) #14	SYT11 (ENSCJAG00000043885) #15	ENSCJAG00000032919	RIT1 (ENSCJAG00000061243) #16	KHDC4 (ENSCJAG00000007881) #17	ENSCJAG00000007878	ARHGEF2 (ENSCJAG00000007846) #18	SSR2 (ENSCJAG00000046590) #19	UBQLN4 (ENSCJAG00000007755) #21	LAMTOR2 (ENSCJAG00000007739) #22	RAB25 (ENSCJAG00000007715) #23	MEX3A (ENSCJAG00000007711) #24	LMNA (ENSCJAG00000005413) #25	SEMA4A (ENSCJAG00000005605) #26	SLC25A44 (ENSCJAG00000005625) #27	ENSCJAG00000005636	BGLAP (ENSCJAG00000046802) #29	PAQR6 (ENSCJAG00000005656) #30	SMG5 (ENSCJAG00000005684) #31	TMEM79 (ENSCJAG00000005765) #32	GLMP (ENSCJAG00000005757) #33	ENSCJAG00000005776 #35	TSACC (ENSCJAG00000005831) #36	RHBG (ENSCJAG00000005838) #37	MEF2D (ENSCJAG00000005848)
Mas night monkey	MODERN SPECIES	1180	ASH1L (ENSANAG00000019337)	ENSANAG00000028010 #13	ENSANAG00000024232	YY1AP1 (ENSANAG00000022356) #11	DAP3 (ENSANAG00000033995) #12	ENSANAG00000035773 #13	ENSANAG00000026598	GON4L (ENSANAG00000036572) #14	ENSANAG00000006710	SYT11 (ENSANAG00000020380) #15	RIT1 (ENSANAG00000033671) #16	ENSANAG00000034289 #17	ARHGEF2 (ENSANAG00000038394) #18	SSR2 (ENSANAG00000024178) #19	UBQLN4 (ENSANAG00000031889) #21	LAMTOR2 (ENSANAG00000036124) #22	RAB25 (ENSANAG00000036045) #23	MEX3A (ENSANAG00000032597) #24	LMNA (ENSANAG00000028703) #25	SEMA4A (ENSANAG00000032935) #26	SLC25A44 (ENSANAG00000033058) #27	ENSANAG00000028929	BGLAP (ENSANAG00000034859) #29	PAQR6 (ENSANAG00000023514) #30	SMG5 (ENSANAG00000032899) #31	TMEM79 (ENSANAG00000028444) #32	GLMP (ENSANAG00000020224) #33	ENSANAG00000026737 #34	CCT3 (ENSANAG00000036513) #35	TSACC (ENSANAG00000036292) #36	RHBG (ENSANAG00000024190) #37
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00900000141074.f	ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00900000141074.f	ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Hominidae	ANCESTRAL SPECIES	6	ENSGT00900000141074.f	ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00530000064067.d #13	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #12	ENSGT00530000064067.c.b #13	ENSGT00530000064067.c.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Gorilla	MODERN SPECIES		RUSC1 (ENSGGOG00000000408)	ASH1L (ENSGGOG00000011218)	ENSGGOG00000000475 #13	YY1AP1 (ENSGGOG00000026024) #11	DAP3 (ENSGGOG00000007618) #12	ENSGGOG00000040593 #13	GON4L (ENSGGOG00000000477) #14	ENSGGOG00000025183 #11	SYT11 (ENSGGOG00000010111) #15	RIT1 (ENSGGOG00000001461) #16	KHDC4 (ENSGGOG00000024568) #17	RXFP4 (ENSGGOG00000034869)	ARHGEF2 (ENSGGOG00000005907) #18	SSR2 (ENSGGOG00000024769) #19	ENSGGOG00000008916 #21	LAMTOR2 (ENSGGOG00000006818) #22	RAB25 (ENSGGOG00000006821) #23	MEX3A (ENSGGOG00000004513) #24	LMNA (ENSGGOG00000000813) #25	SEMA4A (ENSGGOG00000000814) #26	SLC25A44 (ENSGGOG00000010910) #27	PMF1 (ENSGGOG00000037793) #28	BGLAP (ENSGGOG00000010916) #29	ENSGGOG00000010923 #30	SMG5 (ENSGGOG00000010932) #31	TMEM79 (ENSGGOG00000014240) #32	GLMP (ENSGGOG00000014243) #33	CCT3 (ENSGGOG00000023333) #35	TSACC (ENSGGOG00000008582) #36	RHBG (ENSGGOG00000007638) #37	ENSGGOG00000034972
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00530000064067.d #13	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #12	ENSGT00530000064067.c.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Pan	ANCESTRAL SPECIES		ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000155046.t.g.b.b	ENSGT00940000156698	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #12	ENSGT00530000064067.c.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES		RUSC1 (ENSPTRG00000001424)	ASH1L (ENSPTRG00000001425)	ENSPTRG00000047569	CLDN6 (ENSPTRG00000045058)	YY1AP1 (ENSPTRG00000001429) #11	DAP3 (ENSPTRG00000001430) #12	MSTO1 (ENSPTRG00000001428) #13	GON4L (ENSPTRG00000001433) #14	SYT11 (ENSPTRG00000001436) #15	RIT1 (ENSPTRG00000001437) #16	KHDC4 (ENSPTRG00000001438) #17	RXFP4 (ENSPTRG00000001439)	ARHGEF2 (ENSPTRG00000001441) #18	SSR2 (ENSPTRG00000001442) #19	UBQLN4 (ENSPTRG00000001444) #21	LAMTOR2 (ENSPTRG00000001445) #22	RAB25 (ENSPTRG00000001446) #23	MEX3A (ENSPTRG00000030373) #24	LMNA (ENSPTRG00000001447) #25	SEMA4A (ENSPTRG00000001448) #26	SLC25A44 (ENSPTRG00000001449) #27	PMF1 (ENSPTRG00000001450) #28	BGLAP (ENSPTRG00000041553) #29	PAQR6 (ENSPTRG00000001451) #30	SMG5 (ENSPTRG00000023925) #31	TMEM79 (ENSPTRG00000001453) #32	GLMP (ENSPTRG00000001455) #33	CCT3 (ENSPTRG00000001456) #35	TSACC (ENSPTRG00000001457)	RHBG (ENSPTRG00000001458) #37	ENSPTRG00000001459
Chimpanzee	MODERN SPECIES	199															ENSPTRG00000051805 #21	ENSPTRG00000048190 #22
Bonobo	MODERN SPECIES		RUSC1 (ENSPPAG00000030052)	ASH1L (ENSPPAG00000031869)	ENSPPAG00000036109	YY1AP1 (ENSPPAG00000041804) #11	DAP3 (ENSPPAG00000030901) #12	ENSPPAG00000035270	ENSPPAG00000028555 #13	GON4L (ENSPPAG00000030169) #14	SYT11 (ENSPPAG00000039359) #15	RIT1 (ENSPPAG00000043026) #16	KHDC4 (ENSPPAG00000028145) #17	RXFP4 (ENSPPAG00000011483)	ARHGEF2 (ENSPPAG00000043187) #18	ENSPPAG00000036187 #19	UBQLN4 (ENSPPAG00000040262) #21	LAMTOR2 (ENSPPAG00000037502) #22	RAB25 (ENSPPAG00000031127) #23	MEX3A (ENSPPAG00000016303) #24	LMNA (ENSPPAG00000037857) #25	SEMA4A (ENSPPAG00000043828) #26	SLC25A44 (ENSPPAG00000027895) #27	ENSPPAG00000034289	BGLAP (ENSPPAG00000042608) #29	ENSPPAG00000027236 #30	SMG5 (ENSPPAG00000011996) #31	TMEM79 (ENSPPAG00000042037) #32	GLMP (ENSPPAG00000028749) #33	CCT3 (ENSPPAG00000042161) #35	TSACC (ENSPPAG00000040738) #36	RHBG (ENSPPAG00000032922) #37	ENSPPAG00000028566
Human	MODERN SPECIES		PKLR (ENSG00000143627)	FDPS (ENSG00000160752)	RUSC1 (ENSG00000160753)	ASH1L (ENSG00000116539)	MSTO1 (ENSG00000125459) #13	YY1AP1 (ENSG00000163374) #11	DAP3 (ENSG00000132676) #12	GON4L (ENSG00000116580) #14	SYT11 (ENSG00000132718) #15	RIT1 (ENSG00000143622) #16	KHDC4 (ENSG00000132680) #17	RXFP4 (ENSG00000173080)	ARHGEF2 (ENSG00000116584) #18	SSR2 (ENSG00000163479) #19	UBQLN4 (ENSG00000160803) #21	LAMTOR2 (ENSG00000116586) #22	RAB25 (ENSG00000132698) #23	MEX3A (ENSG00000254726) #24	LMNA (ENSG00000160789) #25	SEMA4A (ENSG00000196189) #26	SLC25A44 (ENSG00000160785) #27	PMF1-BGLAP (ENSG00000260238)	PMF1 (ENSG00000160783) #28	BGLAP (ENSG00000242252) #29	PAQR6 (ENSG00000160781) #30	SMG5 (ENSG00000198952) #31	TMEM79 (ENSG00000163472) #32	GLMP (ENSG00000198715) #33	VHLL (ENSG00000189030)	CCT3 (ENSG00000163468) #35	TSACC (ENSG00000163467) #36
Orangutan	MODERN SPECIES		RUSC1 (ENSPPYG00000000745)	ENSPPYG00000033728	ASH1L (ENSPPYG00000000744)	YY1AP1 (ENSPPYG00000000743) #11	DAP3 (ENSPPYG00000000742) #12	MSTO1 (ENSPPYG00000000740) #13	MSTO2P (ENSPPYG00000010648)	GON4L (ENSPPYG00000000739) #14	SYT11 (ENSPPYG00000039531) #15	RIT1 (ENSPPYG00000000737) #16	KHDC4 (ENSPPYG00000000736) #17	RXFP4 (ENSPPYG00000000735)	ARHGEF2 (ENSPPYG00000000734) #18	SSR2 (ENSPPYG00000000733) #19	UBQLN4 (ENSPPYG00000000732) #21	LAMTOR2 (ENSPPYG00000000731) #22	RAB25 (ENSPPYG00000000730) #23	MEX3A (ENSPPYG00000000729) #24	LMNA (ENSPPYG00000000728) #25	SEMA4A (ENSPPYG00000000727) #26	SLC25A44 (ENSPPYG00000000726) #27	ENSPPYG00000000725	PAQR6 (ENSPPYG00000000724) #30	SMG5 (ENSPPYG00000000723) #31	TMEM79 (ENSPPYG00000000722) #32	GLMP (ENSPPYG00000000721) #33	CCT3 (ENSPPYG00000010639) #35	ENSPPYG00000031428 #36	RHBG (ENSPPYG00000000718) #37	ENSPPYG00000000717	MEF2D (ENSPPYG00000000716)
Gibbon	MODERN SPECIES	2	FDPS (ENSNLEG00000012099)	ENSNLEG00000012125	RUSC1 (ENSNLEG00000012131)	ASH1L (ENSNLEG00000012163)	ENSNLEG00000012222 #13	YY1AP1 (ENSNLEG00000012206) #11	DAP3 (ENSNLEG00000012211) #12	ENSNLEG00000031265 #13	GON4L (ENSNLEG00000035449) #14	SYT11 (ENSNLEG00000012224) #15	RIT1 (ENSNLEG00000012228) #16	KHDC4 (ENSNLEG00000012238) #17	ENSNLEG00000012262	ARHGEF2 (ENSNLEG00000012264) #18	SSR2 (ENSNLEG00000032588) #19	LAMTOR2 (ENSNLEG00000035591) #22	RAB25 (ENSNLEG00000012323) #23	MEX3A (ENSNLEG00000012329) #24	LMNA (ENSNLEG00000012331) #25	SEMA4A (ENSNLEG00000012367) #26	ENSNLEG00000012408 #27	ENSNLEG00000033074 #28	BGLAP (ENSNLEG00000012409) #29	ENSNLEG00000012423 #30	SMG5 (ENSNLEG00000012439) #31	TMEM79 (ENSNLEG00000012481) #32	GLMP (ENSNLEG00000032477) #33	CCT3 (ENSNLEG00000012509) #35	TSACC (ENSNLEG00000012582) #36	RHBG (ENSNLEG00000012589) #37	ENSNLEG00000012606
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00900000141074.f	ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36
Rhinopithecus	ANCESTRAL SPECIES	59					ENSGT00390000016256.l.a.a #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b.c #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36
Black snub-nosed monkey	MODERN SPECIES	1571									DCDC2C (ENSRBIG00000042681)	ALLC (ENSRBIG00000032207)	KHDC4 (ENSRBIG00000013231) #17	RXFP4 (ENSRBIG00000032808)	ARHGEF2 (ENSRBIG00000035589) #18	SSR2 (ENSRBIG00000039430) #19	UBQLN4 (ENSRBIG00000033879) #21	LAMTOR2 (ENSRBIG00000043324) #22	RAB25 (ENSRBIG00000044154) #23	MEX3A (ENSRBIG00000033197) #24	LMNA (ENSRBIG00000041859) #25	SEMA4A (ENSRBIG00000037159) #26	ENSRBIG00000026928	SLC25A44 (ENSRBIG00000041041) #27	ENSRBIG00000036011	BGLAP (ENSRBIG00000000752) #29	ENSRBIG00000027798 #30	SMG5 (ENSRBIG00000027428) #31	ENSRBIG00000032628 #32	GLMP (ENSRBIG00000030275) #33	CCT3 (ENSRBIG00000032821) #35	TSACC (ENSRBIG00000036225) #36	RHBG (ENSRBIG00000029171) #37
Golden snub-nosed monkey	MODERN SPECIES	1290															ENSRROG00000027233 #21	LAMTOR2 (ENSRROG00000045270) #22	RAB25 (ENSRROG00000028851) #23	MEX3A (ENSRROG00000029193) #24	LMNA (ENSRROG00000037915) #25	SEMA4A (ENSRROG00000043198) #26	ENSRROG00000044575	SLC25A44 (ENSRROG00000030201) #27	ENSRROG00000038103	PAQR6 (ENSRROG00000042038) #30	SMG5 (ENSRROG00000030035) #31	ENSRROG00000041912 #32
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00900000141074.f	ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36
Vervet Monkey	MODERN SPECIES	12	PKLR (ENSCSAG00000002021)	ENSCSAG00000002022	RUSC1 (ENSCSAG00000002023)	ASH1L (ENSCSAG00000002027)	YY1AP1 (ENSCSAG00000002031) #11	DAP3 (ENSCSAG00000002035) #12	ENSCSAG00000002038 #13	GON4L (ENSCSAG00000002060) #14	SYT11 (ENSCSAG00000002072) #15	RIT1 (ENSCSAG00000002074) #16	KHDC4 (ENSCSAG00000002082) #17	ENSCSAG00000000059	ARHGEF2 (ENSCSAG00000002088) #18	SSR2 (ENSCSAG00000002090) #19	UBQLN4 (ENSCSAG00000002093) #21	LAMTOR2 (ENSCSAG00000002094) #22	RAB25 (ENSCSAG00000002096) #23	MEX3A (ENSCSAG00000002097) #24	LMNA (ENSCSAG00000002099) #25	SEMA4A (ENSCSAG00000002102) #26	SLC25A44 (ENSCSAG00000002104) #27	PMF1 (ENSCSAG00000002107) #28	BGLAP (ENSCSAG00000002112) #29	PAQR6 (ENSCSAG00000002117) #30	SMG5 (ENSCSAG00000002120) #31	TMEM79 (ENSCSAG00000002125) #32	GLMP (ENSCSAG00000002123) #33	CCT3 (ENSCSAG00000002128) #35	TSACC (ENSCSAG00000002131) #36	RHBG (ENSCSAG00000002135) #37	MEF2D (ENSCSAG00000002143)
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00530000064067.h #13	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #12	ENSGT00530000064067.g.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36
Macaca	ANCESTRAL SPECIES		ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000016256.l.a.a #11	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #12	ENSGT00530000064067.g.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Pig-tailed macaque	MODERN SPECIES	262	ENSMNEG00000041237	ENSMNEG00000034281	RUSC1 (ENSMNEG00000037791)	ASH1L (ENSMNEG00000004882)	MSTO1 (ENSMNEG00000030351) #13	YY1AP1 (ENSMNEG00000038421) #11	DAP3 (ENSMNEG00000043408) #12	GON4L (ENSMNEG00000022837) #14	SYT11 (ENSMNEG00000039442) #15	RIT1 (ENSMNEG00000039545) #16	KHDC4 (ENSMNEG00000005131) #17	RXFP4 (ENSMNEG00000025991)	ARHGEF2 (ENSMNEG00000030024) #18	ENSMNEG00000036868 #19	UBQLN4 (ENSMNEG00000028661) #21	LAMTOR2 (ENSMNEG00000044990) #22	RAB25 (ENSMNEG00000004251) #23	MEX3A (ENSMNEG00000031569) #24	LMNA (ENSMNEG00000045506) #25	SEMA4A (ENSMNEG00000027619) #26	ENSMNEG00000041520	SLC25A44 (ENSMNEG00000032439) #27	PMF1 (ENSMNEG00000030198) #28	BGLAP (ENSMNEG00000014728) #29	ENSMNEG00000037204 #30	SMG5 (ENSMNEG00000044425) #31	TMEM79 (ENSMNEG00000040540) #32	GLMP (ENSMNEG00000034996) #33	CCT3 (ENSMNEG00000027103) #35	TSACC (ENSMNEG00000030389) #36	RHBG (ENSMNEG00000032887) #37
Macaca_a	ANCESTRAL SPECIES		ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000016256.l.a.a #11	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #12	ENSGT00530000064067.g.b #13	ENSGT00530000064067.g.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000005131 #33	ENSGT00390000002390.b #32	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00990000210932
Crab-eating macaque	MODERN SPECIES		RUSC1 (ENSMFAG00000042892)	ENSMFAG00000059657	ASH1L (ENSMFAG00000004660)	ENSMFAG00000050889 #11	ENSMFAG00000044446 #11	ENSMFAG00000056171	DAP3 (ENSMFAG00000031112) #12	MSTO1 (ENSMFAG00000031664) #13	GON4L (ENSMFAG00000035960) #14	SYT11 (ENSMFAG00000039413) #15	RIT1 (ENSMFAG00000054543) #16	KHDC4 (ENSMFAG00000003201) #17	ENSMFAG00000029955	ARHGEF2 (ENSMFAG00000034906) #18	SSR2 (ENSMFAG00000040060) #19	LAMTOR2 (ENSMFAG00000018166) #22	RAB25 (ENSMFAG00000000115) #23	MEX3A (ENSMFAG00000000628) #24	LMNA (ENSMFAG00000045463) #25	ENSMFAG00000054546	SEMA4A (ENSMFAG00000037487) #26	SLC25A44 (ENSMFAG00000003800) #27	PMF1 (ENSMFAG00000031299) #28	BGLAP (ENSMFAG00000056045) #29	ENSMFAG00000043399 #30	TMEM79 (ENSMFAG00000002046) #32	SMG5 (ENSMFAG00000045357) #31	CCT3 (ENSMFAG00000033146) #35	TSACC (ENSMFAG00000036557) #36	RHBG (ENSMFAG00000040010) #37	ENSMFAG00000005400
Rhesus	MODERN SPECIES		ENSMMUG00000063807	RUSC1 (ENSMMUG00000023145)	ENSMMUG00000058124	ENSMMUG00000009981 #13	ASH1L (ENSMMUG00000023146)	DAP3 (ENSMMUG00000018080) #12	ENSMMUG00000062397 #13	GON4L (ENSMMUG00000009987) #14	SYT11 (ENSMMUG00000021312) #15	RIT1 (ENSMMUG00000053454) #16	KHDC4 (ENSMMUG00000004648) #17	RXFP4 (ENSMMUG00000005090)	ARHGEF2 (ENSMMUG00000005092) #18	SSR2 (ENSMMUG00000013495) #19	UBQLN4 (ENSMMUG00000009983) #21	LAMTOR2 (ENSMMUG00000012126) #22	RAB25 (ENSMMUG00000022306) #23	MEX3A (ENSMMUG00000052160) #24	LMNA (ENSMMUG00000016096) #25	ENSMMUG00000037731	SEMA4A (ENSMMUG00000004901) #26	BGLAP (ENSMMUG00000004902) #27	PAQR6 (ENSMMUG00000000085) #30	SMG5 (ENSMMUG00000000090) #31	TMEM79 (ENSMMUG00000047929) #32	GLMP (ENSMMUG00000000092) #33	VHLL (ENSMMUG00000064443)	CCT3 (ENSMMUG00000019034) #35	TSACC (ENSMMUG00000051030) #36	RHBG (ENSMMUG00000017965) #37	ENSMMUG00000017966
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00530000064067.h #13	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #12	ENSGT00530000064067.g.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36
Olive baboon	MODERN SPECIES		FDPS (ENSPANG00000024920)	RUSC1 (ENSPANG00000006655)	ENSPANG00000045760	ASH1L (ENSPANG00000004959)	MSTO1 (ENSPANG00000006654) #13	YY1AP1 (ENSPANG00000029721) #11	DAP3 (ENSPANG00000001758) #12	GON4L (ENSPANG00000011456) #14	SYT11 (ENSPANG00000018152) #15	RIT1 (ENSPANG00000035332) #16	KHDC4 (ENSPANG00000011455) #17	ENSPANG00000004167	ARHGEF2 (ENSPANG00000006851) #18	SSR2 (ENSPANG00000005571) #19	UBQLN4 (ENSPANG00000001757) #21	LAMTOR2 (ENSPANG00000032414) #22	RAB25 (ENSPANG00000003113) #23	MEX3A (ENSPANG00000020303) #24	LMNA (ENSPANG00000003882) #25	SEMA4A (ENSPANG00000016075) #26	ENSPANG00000041668	SLC25A44 (ENSPANG00000008735) #27	PMF1 (ENSPANG00000010692) #28	BGLAP (ENSPANG00000023523) #29	PAQR6 (ENSPANG00000008734) #30	SMG5 (ENSPANG00000011201) #31	TMEM79 (ENSPANG00000011454) #32	GLMP (ENSPANG00000018021) #33	ENSPANG00000003881 #34	CCT3 (ENSPANG00000026114) #35	TSACC (ENSPANG00000019713) #36
Cercopithecinae_d	ANCESTRAL SPECIES	33					ENSGT00390000016256.l.b #11	ENSGT00390000015248 #12	ENSGT00530000064067.g.a #13	ENSGT00390000016256.k #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT01010000224083 #34	ENSGT00570000079224 #35	ENSGT00390000012524 #36
Sooty mangabey	MODERN SPECIES	226					YY1AP1 (ENSCATG00000042138) #11	DAP3 (ENSCATG00000037832) #12	MSTO1 (ENSCATG00000041352) #13	GON4L (ENSCATG00000031497) #14	SYT11 (ENSCATG00000038729) #15	RIT1 (ENSCATG00000045033) #16	KHDC4 (ENSCATG00000034662) #17	RXFP4 (ENSCATG00000019172)	ARHGEF2 (ENSCATG00000029542) #18	SSR2 (ENSCATG00000030169) #19	UBQLN4 (ENSCATG00000023959) #21	LAMTOR2 (ENSCATG00000030341) #22	RAB25 (ENSCATG00000029662) #23	MEX3A (ENSCATG00000032390) #24	LMNA (ENSCATG00000033574) #25	SEMA4A (ENSCATG00000036260) #26	ENSCATG00000042076	SLC25A44 (ENSCATG00000039803) #27	PMF1 (ENSCATG00000029246) #28	BGLAP (ENSCATG00000014375) #29	PAQR6 (ENSCATG00000029286) #30	SMG5 (ENSCATG00000030539) #31	TMEM79 (ENSCATG00000041384) #32	GLMP (ENSCATG00000032524) #33	CCT3 (ENSCATG00000032970) #35	TSACC (ENSCATG00000032103) #36	RHBG (ENSCATG00000028238) #37
Drill	MODERN SPECIES	1097								GON4L (ENSMLEG00000039636) #14	SYT11 (ENSMLEG00000034240) #15	RIT1 (ENSMLEG00000030499) #16	KHDC4 (ENSMLEG00000036924) #17	RXFP4 (ENSMLEG00000000539)	ARHGEF2 (ENSMLEG00000038613) #18	SSR2 (ENSMLEG00000038454) #19	UBQLN4 (ENSMLEG00000036998) #21	LAMTOR2 (ENSMLEG00000020600) #22	RAB25 (ENSMLEG00000025037) #23	MEX3A (ENSMLEG00000023495) #24	LMNA (ENSMLEG00000030821) #25	SEMA4A (ENSMLEG00000033397) #26	ENSMLEG00000037790	SLC25A44 (ENSMLEG00000019841) #27	PMF1 (ENSMLEG00000032681) #28	BGLAP (ENSMLEG00000039620) #29	PAQR6 (ENSMLEG00000038853) #30	SMG5 (ENSMLEG00000041192) #31	TMEM79 (ENSMLEG00000038027) #32	GLMP (ENSMLEG00000038171) #33	ENSMLEG00000043471 #34	CCT3 (ENSMLEG00000036583) #35	TSACC (ENSMLEG00000015946) #36
Tarsier	MODERN SPECIES	1540															UBQLN4 (ENSTSYG00000011830) #21	LAMTOR2 (ENSTSYG00000028246) #22
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Lemuriformes	ANCESTRAL SPECIES	11	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Lemuriformes_a	ANCESTRAL SPECIES	19	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Coquerels sifaka	MODERN SPECIES	750	HCN3 (ENSPCOG00000021822)	PKLR (ENSPCOG00000028225)	ENSPCOG00000022505	RUSC1 (ENSPCOG00000025947)	ASH1L (ENSPCOG00000017924)	DAP3 (ENSPCOG00000027412) #12	MSTO1 (ENSPCOG00000017579) #13	ENSPCOG00000024149 #14	SYT11 (ENSPCOG00000017038) #15	RIT1 (ENSPCOG00000027211) #16	KHDC4 (ENSPCOG00000027660) #17	ARHGEF2 (ENSPCOG00000016528) #18	ENSPCOG00000019355	SSR2 (ENSPCOG00000022217) #19	UBQLN4 (ENSPCOG00000017664) #21	LAMTOR2 (ENSPCOG00000023468) #22	RAB25 (ENSPCOG00000005144) #23	MEX3A (ENSPCOG00000019307) #24	ENSPCOG00000028240 #25	SEMA4A (ENSPCOG00000021582) #26	SLC25A44 (ENSPCOG00000017429) #27	ENSPCOG00000022530	BGLAP (ENSPCOG00000020241) #29	PAQR6 (ENSPCOG00000024324) #30	SMG5 (ENSPCOG00000004741) #31	TMEM79 (ENSPCOG00000027811) #32	GLMP (ENSPCOG00000027438) #33	CCT3 (ENSPCOG00000027102) #35	TSACC (ENSPCOG00000018038) #36	RHBG (ENSPCOG00000010688) #37	MEF2D (ENSPCOG00000027219)
Greater bamboo lemur	MODERN SPECIES	1411											KHDC4 (ENSPSMG00000006345) #17	RXFP4 (ENSPSMG00000006340)	ARHGEF2 (ENSPSMG00000006180) #18	SSR2 (ENSPSMG00000006059) #19	UBQLN4 (ENSPSMG00000006027) #21	LAMTOR2 (ENSPSMG00000006010) #22	RAB25 (ENSPSMG00000006001) #23	MEX3A (ENSPSMG00000005991) #24
Mouse lemur	MODERN SPECIES	11	HCN3 (ENSMICG00000030454)	PKLR (ENSMICG00000007458)	ENSMICG00000007468	RUSC1 (ENSMICG00000029028)	ASH1L (ENSMICG00000007490)	DAP3 (ENSMICG00000031947) #12	MSTO1 (ENSMICG00000028414) #13	ENSMICG00000002183 #14	SYT11 (ENSMICG00000038586) #15	RIT1 (ENSMICG00000044667) #16	KHDC4 (ENSMICG00000002202) #17	ARHGEF2 (ENSMICG00000002212) #18	ENSMICG00000030729	ENSMICG00000038131 #19	UBQLN4 (ENSMICG00000002222) #21	LAMTOR2 (ENSMICG00000002227) #22	RAB25 (ENSMICG00000002230) #23	MEX3A (ENSMICG00000046214) #24	LMNA (ENSMICG00000002236) #25	SEMA4A (ENSMICG00000002242) #26	SLC25A44 (ENSMICG00000047168) #27	ENSMICG00000002248	BGLAP (ENSMICG00000045135) #29	PAQR6 (ENSMICG00000002252) #30	SMG5 (ENSMICG00000002257) #31	TMEM79 (ENSMICG00000002260) #32	GLMP (ENSMICG00000002263) #33	ENSMICG00000038362	ENSMICG00000030201 #35	TSACC (ENSMICG00000002266) #36	RHBG (ENSMICG00000017784) #37
Bushbaby	MODERN SPECIES	206	CLK2 (ENSOGAG00000009589)	HCN3 (ENSOGAG00000009594)	PKLR (ENSOGAG00000028418)	RUSC1 (ENSOGAG00000025498)	ASH1L (ENSOGAG00000009609)	DAP3 (ENSOGAG00000000845) #12	MSTO1 (ENSOGAG00000031236) #13	ENSOGAG00000000849 #14	SYT11 (ENSOGAG00000002258) #15	ENSOGAG00000002260 #16	KHDC4 (ENSOGAG00000002261) #17	ENSOGAG00000026040	ARHGEF2 (ENSOGAG00000011581) #18	SSR2 (ENSOGAG00000016945) #19	UBQLN4 (ENSOGAG00000016948) #21	LAMTOR2 (ENSOGAG00000016953) #22	RAB25 (ENSOGAG00000016955) #23	MEX3A (ENSOGAG00000029891) #24	LMNA (ENSOGAG00000016961) #25	SEMA4A (ENSOGAG00000025069) #26	ENSOGAG00000034650 #27	PMF1 (ENSOGAG00000004964) #28	BGLAP (ENSOGAG00000025659) #29	PAQR6 (ENSOGAG00000031893) #30	SMG5 (ENSOGAG00000004966) #31	TMEM79 (ENSOGAG00000012912) #32	GLMP (ENSOGAG00000030120) #33	CCT3 (ENSOGAG00000008967) #35	TSACC (ENSOGAG00000031578) #36	RHBG (ENSOGAG00000006682) #37	MEF2D (ENSOGAG00000011222)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00390000012642	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Tree shrew	MODERN SPECIES	3906												RXFP4 (ENSTBEG00000001002)	ARHGEF2 (ENSTBEG00000001641) #18	SSR2 (ENSTBEG00000002867) #19	UBQLN4 (ENSTBEG00000003066) #21	LAMTOR2 (ENSTBEG00000003768) #22	RAB25 (ENSTBEG00000004142) #23	LMNA (ENSTBEG00000005069) #25
Glires	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01090000260051.b.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Rabbit	MODERN SPECIES	4	FDPS (ENSOCUG00000033536)	ENSOCUG00000038913	ASH1L (ENSOCUG00000014986)	ENSOCUG00000034353	DAP3 (ENSOCUG00000004785) #12	MSTO1 (ENSOCUG00000010186) #13	ENSOCUG00000010191 #14	ENSOCUG00000026145 #14	SYT11 (ENSOCUG00000027971) #15	RIT1 (ENSOCUG00000006377) #16	KHDC4 (ENSOCUG00000010430) #17	ENSOCUG00000026819	ARHGEF2 (ENSOCUG00000001937) #18	SSR2 (ENSOCUG00000008455) #19	UBQLN4 (ENSOCUG00000007156) #21	LAMTOR2 (ENSOCUG00000027994) #22	RAB25 (ENSOCUG00000005634) #23	ENSOCUG00000005640 #24	LMNA (ENSOCUG00000010011) #25	SEMA4A (ENSOCUG00000001326) #26	SLC25A44 (ENSOCUG00000012861) #27	PMF1 (ENSOCUG00000012870) #28	BGLAP (ENSOCUG00000025958) #29	SMG5 (ENSOCUG00000012886) #31	ENSOCUG00000012899 #32	GLMP (ENSOCUG00000026609) #33	CCT3 (ENSOCUG00000000137) #35	TSACC (ENSOCUG00000029754) #36	RHBG (ENSOCUG00000016130) #37	MEF2D (ENSOCUG00000012173)	TTC24 (ENSOCUG00000023015)
Pika	MODERN SPECIES	3341													ARHGEF2 (ENSOPRG00000002782) #18	SSR2 (ENSOPRG00000002830) #19	UBQLN4 (ENSOPRG00000002851) #21	LAMTOR2 (ENSOPRG00000002877) #22	RAB25 (ENSOPRG00000002894) #23	MEX3A (ENSOPRG00000002937) #24	LMNA (ENSOPRG00000002966) #25	SEMA4A (ENSOPRG00000002992) #26	SLC25A44 (ENSOPRG00000003022) #27
Rodentia	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Muroidea	ANCESTRAL SPECIES	6	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224.x #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224.x #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Northern American deer mouse	MODERN SPECIES	19	Hcn3 (ENSPEMG00000009033)	Pklr (ENSPEMG00000010915)	Fdps (ENSPEMG00000030569)	Rusc1 (ENSPEMG00000018232)	Ash1l (ENSPEMG00000006789)	ENSPEMG00000019185 #12	Msto1 (ENSPEMG00000016178) #13	Gon4l (ENSPEMG00000017252) #14	Syt11 (ENSPEMG00000003809) #15	Rit1 (ENSPEMG00000030433) #16	Khdc4 (ENSPEMG00000007794) #17	Rxfp4 (ENSPEMG00000011662)	Arhgef2 (ENSPEMG00000002997) #18	Ssr2 (ENSPEMG00000012464) #19	Ubqln4 (ENSPEMG00000016759) #21	Lamtor2 (ENSPEMG00000009818) #22	Rab25 (ENSPEMG00000007548) #23	Mex3a (ENSPEMG00000019014) #24	Lmna (ENSPEMG00000015821) #25	Sema4a (ENSPEMG00000015516) #26	Slc25a44 (ENSPEMG00000013362) #27	Pmf1 (ENSPEMG00000012625) #28	ENSPEMG00000025586 #29	Paqr6 (ENSPEMG00000002777) #30	Smg5 (ENSPEMG00000001819) #31	Tmem79 (ENSPEMG00000007739) #32	Glmp (ENSPEMG00000013529) #33	Cct3 (ENSPEMG00000015732) #35	Tsacc (ENSPEMG00000014593) #36	Rhbg (ENSPEMG00000011996) #37	Mef2d (ENSPEMG00000019035)
Prairie vole	MODERN SPECIES	8											ENSMOCG00000007816 #17	ENSMOCG00000019234 #18	ENSMOCG00000020991 #18	Ssr2 (ENSMOCG00000001890) #19	ENSMOCG00000013140 #21	Lamtor2 (ENSMOCG00000018988) #22	Rab25 (ENSMOCG00000010953) #23	Mex3a (ENSMOCG00000017881) #24	Lmna (ENSMOCG00000011854) #25	Sema4a (ENSMOCG00000022467) #26	Slc25a44 (ENSMOCG00000014671) #27	ENSMOCG00000018426 #28	ENSMOCG00000019680 #29	Paqr6 (ENSMOCG00000006437) #30	Smg5 (ENSMOCG00000016590) #31	Tmem79 (ENSMOCG00000017414) #32	Glmp (ENSMOCG00000009096) #33	Cct3 (ENSMOCG00000010144) #35	Tsacc (ENSMOCG00000013419) #36	ENSMOCG00000022002	Rhbg (ENSMOCG00000005326) #37
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224.x #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Chinese hamster chok1gshd	MODERN SPECIES	352	Pklr (ENSCGRG00001023372)	ENSCGRG00001023534	Fdps (ENSCGRG00001025003)	Rusc1 (ENSCGRG00001009459)	Ash1l (ENSCGRG00001011192)	Dap3 (ENSCGRG00001022521) #12	Msto1 (ENSCGRG00001015681) #13	Gon4l (ENSCGRG00001023253) #14	Syt11 (ENSCGRG00001023824) #15	Rit1 (ENSCGRG00001004542) #16	Khdc4 (ENSCGRG00001012564) #17	Rxfp4 (ENSCGRG00001002374)	Arhgef2 (ENSCGRG00001006987) #18	Ssr2 (ENSCGRG00001006822) #19	Ubqln4 (ENSCGRG00001019653) #21	Lamtor2 (ENSCGRG00001008748) #22	Rab25 (ENSCGRG00001017341) #23	Mex3a (ENSCGRG00001000412) #24	Lmna (ENSCGRG00001003129) #25	Sema4a (ENSCGRG00001020918) #26	Slc25a44 (ENSCGRG00001021651) #27	Pmf1 (ENSCGRG00001010918) #28	ENSCGRG00001014532 #29	Paqr6 (ENSCGRG00001016796) #30	Smg5 (ENSCGRG00001006336) #31	Tmem79 (ENSCGRG00001024551) #32	Glmp (ENSCGRG00001007094) #33	Cct3 (ENSCGRG00001015935) #35	Tsacc (ENSCGRG00001019825) #36	Rhbg (ENSCGRG00001000730) #37	Mef2d (ENSCGRG00001013661)
Golden Hamster	MODERN SPECIES	714	Clk2 (ENSMAUG00000016789)	Hcn3 (ENSMAUG00000017469)	Pklr (ENSMAUG00000012808)	Fdps (ENSMAUG00000020872)	ENSMAUG00000017088	Ash1l (ENSMAUG00000000702)	Msto1 (ENSMAUG00000020345) #13	ENSMAUG00000000631 #14	ENSMAUG00000013419 #15	Rit1 (ENSMAUG00000000572) #16	Khdc4 (ENSMAUG00000019676) #17	ENSMAUG00000013645 #18	ENSMAUG00000019940 #18	Ssr2 (ENSMAUG00000021161) #19	Ubqln4 (ENSMAUG00000007686) #21	Lamtor2 (ENSMAUG00000000547) #22	Mex3a (ENSMAUG00000012601) #24	Lmna (ENSMAUG00000012838) #25	ENSMAUG00000017061 #26	Slc25a44 (ENSMAUG00000021047) #27	Pmf1 (ENSMAUG00000019629) #28	ENSMAUG00000015288 #29	Paqr6 (ENSMAUG00000010297) #30	Smg5 (ENSMAUG00000010381) #31	Tmem79 (ENSMAUG00000014791) #32	ENSMAUG00000014449 #35	Tsacc (ENSMAUG00000016723) #36	Rhbg (ENSMAUG00000009341) #37	Mef2d (ENSMAUG00000016452)	Iqgap3 (ENSMAUG00000008455)	ENSMAUG00000018760
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b.u	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Rat	DUPLICATION
Rat	MODERN SPECIES	17	OR6c8 (ENSRNOG00000043334)	Or6c63 (ENSRNOG00000043299)	Or10p22 (ENSRNOG00000064513)	Olr876 (ENSRNOG00000067859)	Mettl7b (ENSRNOG00000007927)	Itga7 (ENSRNOG00000007905)	Bloc1s1 (ENSRNOG00000007784)	Cd63 (ENSRNOG00000007650)	Gdf11 (ENSRNOG00000007610)	Sarnp (ENSRNOG00000030520)	Ormdl2 (ENSRNOG00000030120)	Dnajc14 (ENSRNOG00000006844)	Tmem198b (ENSRNOG00000006827)	Mmp19 (ENSRNOG00000006778)	Pym1 (ENSRNOG00000058130)	ENSRNOG00000066475 #22	Dgka (ENSRNOG00000022943)	Pmel (ENSRNOG00000023085)	Cdk2 (ENSRNOG00000006469)	Rab5b (ENSRNOG00000006130)	Suox (ENSRNOG00000005987)	Ikzf4 (ENSRNOG00000005535)	Erbb3 (ENSRNOG00000004964)	Pa2g4 (ENSRNOG00000004904)	Zc3h10 (ENSRNOG00000040281)	Rps15-ps2 (ENSRNOG00000043026)	Esyt1 (ENSRNOG00000060753)	LOC120093525 (ENSRNOG00000028837)	Myl6 (ENSRNOG00000054140)	Smarcc2 (ENSRNOG00000031135)	Rnf41 (ENSRNOG00000023456)
Rat	MODERN SPECIES	11	Entrep3 (ENSRNOG00000020518)	Scamp3 (ENSRNOG00000020500)	Hcn3 (ENSRNOG00000020444)	Pklr (ENSRNOG00000020420)	Fdps (ENSRNOG00000043377)	Ash1l (ENSRNOG00000020386)	Dap3 (ENSRNOG00000020373) #12	Msto1 (ENSRNOG00000020357) #13	Gon4l (ENSRNOG00000020297) #14	Syt11 (ENSRNOG00000020279) #15	Rit1 (ENSRNOG00000064584) #16	Khdc4 (ENSRNOG00000020139) #17	Arhgef2 (ENSRNOG00000020027) #18	Ssr2 (ENSRNOG00000019940) #19	Ubqln4 (ENSRNOG00000019933) #21	Lamtor2 (ENSRNOG00000019908) #22	Rab25 (ENSRNOG00000023640) #23	Mex3a (ENSRNOG00000058654) #24	Lmna (ENSRNOG00000019638) #25	Sema4a (ENSRNOG00000019737) #26	Slc25a44 (ENSRNOG00000025269) #27	Pmf1 (ENSRNOG00000019620) #28	Bglap (ENSRNOG00000019607) #29	Paqr6 (ENSRNOG00000026059) #30	Smg5 (ENSRNOG00000019590) #31	Tmem79 (ENSRNOG00000019414) #32	Glmp (ENSRNOG00000019281) #33	Cct3 (ENSRNOG00000019090) #35	Tsacc (ENSRNOG00000037552) #36	Rhbg (ENSRNOG00000019412) #37	Mef2d (ENSRNOG00000031778)
Mus	ANCESTRAL SPECIES	7	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b.u	ENSGT00900000141033.b.b.v	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a.b #37	ENSGT00950000182844.b.b.a.a #37
Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b.u	ENSGT00900000141033.b.b.v	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131.e #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a.b #37	ENSGT00950000182844.b.b.a.a #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b.u	ENSGT00900000141033.b.b.v	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131.e #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a.b #37	ENSGT00950000182844.b.b.a.a #37
Mouse	MODERN SPECIES	12	Hcn3 (ENSMUSG00000028051)	Pklr (ENSMUSG00000041237)	Fdps (ENSMUSG00000059743)	Rusc1 (ENSMUSG00000041263)	Ash1l (ENSMUSG00000028053)	Dap3 (ENSMUSG00000068921) #12	Msto1 (ENSMUSG00000068922) #13	Gon4l (ENSMUSG00000054199) #14	Syt11 (ENSMUSG00000068923) #15	Rit1 (ENSMUSG00000028057) #16	Khdc4 (ENSMUSG00000028060) #17	Rxfp4 (ENSMUSG00000049741)	Arhgef2 (ENSMUSG00000028059) #18	Ssr2 (ENSMUSG00000041355) #19	Ubqln4 (ENSMUSG00000008604) #21	Lamtor2 (ENSMUSG00000028062) #22	Rab25 (ENSMUSG00000008601) #23	Mex3a (ENSMUSG00000074480) #24	Lmna (ENSMUSG00000028063) #25	Sema4a (ENSMUSG00000028064) #26	Slc25a44 (ENSMUSG00000050144) #27	Pmf1 (ENSMUSG00000028066) #28	Bglap (ENSMUSG00000074483) #29	Bglap2 (ENSMUSG00000074486) #29	Bglap3 (ENSMUSG00000074489) #29	Paqr6 (ENSMUSG00000041423) #30	Smg5 (ENSMUSG00000001415) #31	Tmem79 (ENSMUSG00000001420) #32	Glmp (ENSMUSG00000001418) #33	Cct3 (ENSMUSG00000001416) #35	Tsacc (ENSMUSG00000010538) #36
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b.u	ENSGT00900000141033.b.b.v	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131.e #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a.b #37	ENSGT00950000182844.b.b.a.a #37
Steppe mouse	MODERN SPECIES	2494									Syt11 (ENSMSIG00000028436) #15	Rit1 (ENSMSIG00000028448) #16	Khdc4 (ENSMSIG00000028451) #17	ENSMSIG00000028469	Arhgef2 (ENSMSIG00000028473) #18	Ssr2 (ENSMSIG00000029173) #19	Ubqln4 (ENSMSIG00000029187) #21	Lamtor2 (ENSMSIG00000029190) #22	Rab25 (ENSMSIG00000029192) #23	ENSMSIG00000029193 #24	Lmna (ENSMSIG00000029196) #25	Sema4a (ENSMSIG00000029207) #26	ENSMSIG00000029223	Slc25a44 (ENSMSIG00000029225) #27	Pmf1 (ENSMSIG00000029235) #28	ENSMSIG00000029238 #29	ENSMSIG00000029245 #30	Smg5 (ENSMSIG00000029250) #31	Tmem79 (ENSMSIG00000029273) #32	Glmp (ENSMSIG00000029280) #33	Cct3 (ENSMSIG00000029307) #35	ENSMSIG00000029349 #36
spretus	MODERN SPECIES	12	Pklr (MGP_SPRETEiJ_G0026130)	Fdps (MGP_SPRETEiJ_G0026129)	Rusc1 (MGP_SPRETEiJ_G0026128)	MGP_SPRETEiJ_G0026127	Ash1l (MGP_SPRETEiJ_G0026126)	Dap3 (MGP_SPRETEiJ_G0026125) #12	Msto1 (MGP_SPRETEiJ_G0026124) #13	Gon4l (MGP_SPRETEiJ_G0026123) #14	Syt11 (MGP_SPRETEiJ_G0026122) #15	Rit1 (MGP_SPRETEiJ_G0026121) #16	Khdc4 (MGP_SPRETEiJ_G0026120) #17	Rxfp4 (MGP_SPRETEiJ_G0026119)	Arhgef2 (MGP_SPRETEiJ_G0026118) #18	Ssr2 (MGP_SPRETEiJ_G0026117) #19	Ubqln4 (MGP_SPRETEiJ_G0026116) #21	Lamtor2 (MGP_SPRETEiJ_G0026115) #22	Rab25 (MGP_SPRETEiJ_G0026114) #23	MGP_SPRETEiJ_G0026113 #24	Lmna (MGP_SPRETEiJ_G0026112) #25	Sema4a (MGP_SPRETEiJ_G0026111) #26	Slc25a44 (MGP_SPRETEiJ_G0026110) #27	Pmf1 (MGP_SPRETEiJ_G0026109) #28	MGP_SPRETEiJ_G0026107 #29	MGP_SPRETEiJ_G0026108 #29	MGP_SPRETEiJ_G0026106 #29	Paqr6 (MGP_SPRETEiJ_G0026105) #30	Smg5 (MGP_SPRETEiJ_G0026104) #31	Tmem79 (MGP_SPRETEiJ_G0026103) #32	Glmp (MGP_SPRETEiJ_G0026102) #33	Cct3 (MGP_SPRETEiJ_G0026101) #35	Tsacc (MGP_SPRETEiJ_G0026100) #36
Ryukyu mouse	MODERN SPECIES	12	Pklr (MGP_CAROLIEiJ_G0025187)	Fdps (MGP_CAROLIEiJ_G0025186)	Rusc1 (MGP_CAROLIEiJ_G0025185)	MGP_CAROLIEiJ_G0025184	Ash1l (MGP_CAROLIEiJ_G0025183)	Dap3 (MGP_CAROLIEiJ_G0025182) #12	Msto1 (MGP_CAROLIEiJ_G0025181) #13	MGP_CAROLIEiJ_G0025180 #14	Syt11 (MGP_CAROLIEiJ_G0025179) #15	Rit1 (MGP_CAROLIEiJ_G0025178) #16	Khdc4 (MGP_CAROLIEiJ_G0025177) #17	Rxfp4 (MGP_CAROLIEiJ_G0025176)	Arhgef2 (MGP_CAROLIEiJ_G0025175) #18	Ssr2 (MGP_CAROLIEiJ_G0025174) #19	Ubqln4 (MGP_CAROLIEiJ_G0025173) #21	Lamtor2 (MGP_CAROLIEiJ_G0025172) #22	Rab25 (MGP_CAROLIEiJ_G0025171) #23	Mex3a (MGP_CAROLIEiJ_G0025170) #24	Lmna (MGP_CAROLIEiJ_G0025169) #25	Sema4a (MGP_CAROLIEiJ_G0025168) #26	Slc25a44 (MGP_CAROLIEiJ_G0025167) #27	Pmf1 (MGP_CAROLIEiJ_G0025166) #28	MGP_CAROLIEiJ_G0025165 #29	Paqr6 (MGP_CAROLIEiJ_G0025164) #30	Smg5 (MGP_CAROLIEiJ_G0025163) #31	Tmem79 (MGP_CAROLIEiJ_G0025162) #32	Glmp (MGP_CAROLIEiJ_G0025161) #33	Cct3 (MGP_CAROLIEiJ_G0025160) #35	Tsacc (MGP_CAROLIEiJ_G0025159) #36	MGP_CAROLIEiJ_G0025158 #37	Rhbg (MGP_CAROLIEiJ_G0025157) #37
Shrew mouse	MODERN SPECIES	17	Hcn3 (MGP_PahariEiJ_G0026632)	Pklr (MGP_PahariEiJ_G0026631)	Fdps (MGP_PahariEiJ_G0026630)	Rusc1 (MGP_PahariEiJ_G0026629)	MGP_PahariEiJ_G0026628	Ash1l (MGP_PahariEiJ_G0026627)	Dap3 (MGP_PahariEiJ_G0026626) #12	MGP_PahariEiJ_G0026625 #13	Gon4l (MGP_PahariEiJ_G0026624) #14	Syt11 (MGP_PahariEiJ_G0026623) #15	Rit1 (MGP_PahariEiJ_G0026622) #16	Khdc4 (MGP_PahariEiJ_G0026621) #17	Arhgef2 (MGP_PahariEiJ_G0026620) #18	Ssr2 (MGP_PahariEiJ_G0026619) #19	Ubqln4 (MGP_PahariEiJ_G0026618) #21	Lamtor2 (MGP_PahariEiJ_G0026617) #22	Rab25 (MGP_PahariEiJ_G0026616) #23	Mex3a (MGP_PahariEiJ_G0026615) #24	Lmna (MGP_PahariEiJ_G0026614) #25	Sema4a (MGP_PahariEiJ_G0026613) #26	Slc25a44 (MGP_PahariEiJ_G0026612) #27	Pmf1 (MGP_PahariEiJ_G0026611) #28	MGP_PahariEiJ_G0026609 #29	MGP_PahariEiJ_G0026610 #29	Paqr6 (MGP_PahariEiJ_G0026607) #30	Smg5 (MGP_PahariEiJ_G0026606) #31	Tmem79 (MGP_PahariEiJ_G0026605) #32	Glmp (MGP_PahariEiJ_G0026604) #33	MGP_PahariEiJ_G0026603 #35	Tsacc (MGP_PahariEiJ_G0026602) #36	MGP_PahariEiJ_G0026601 #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	497	Clk2 (ENSNGAG00000022518)	Hcn3 (ENSNGAG00000021908)	Pklr (ENSNGAG00000019876)	Rusc1 (ENSNGAG00000008260)	Ash1l (ENSNGAG00000021986)	Dap3 (ENSNGAG00000014173) #12	Msto1 (ENSNGAG00000022769) #13	Gon4l (ENSNGAG00000020844) #14	Syt11 (ENSNGAG00000013529) #15	Rit1 (ENSNGAG00000013104) #16	Khdc4 (ENSNGAG00000012421) #17	ENSNGAG00000011350 #18	ENSNGAG00000009107 #18	Ssr2 (ENSNGAG00000002859) #19	Ubqln4 (ENSNGAG00000020831) #21	Lamtor2 (ENSNGAG00000020249) #22	Rab25 (ENSNGAG00000019999) #23	Mex3a (ENSNGAG00000019587) #24	Lmna (ENSNGAG00000017368) #25	Sema4a (ENSNGAG00000012750) #26	Slc25a44 (ENSNGAG00000010575) #27	Pmf1 (ENSNGAG00000007750) #28	ENSNGAG00000001625 #29	Paqr6 (ENSNGAG00000000673) #30	Smg5 (ENSNGAG00000020706) #31	Tmem79 (ENSNGAG00000020294) #32	Glmp (ENSNGAG00000019347) #33	Cct3 (ENSNGAG00000016875) #35	Rhbg (ENSNGAG00000019322) #37	Mef2d (ENSNGAG00000016036)	Iqgap3 (ENSNGAG00000020879)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	141	Hcn3 (ENSJJAG00000017693)	Pklr (ENSJJAG00000019099)	Rusc1 (ENSJJAG00000001429)	Ash1l (ENSJJAG00000017942)	Dap3 (ENSJJAG00000010235) #12	Msto1 (ENSJJAG00000019140) #13	ENSJJAG00000013614 #14	ENSJJAG00000010636 #15	Rit1 (ENSJJAG00000023411) #16	ENSJJAG00000020627 #17	Rxfp4 (ENSJJAG00000013686)	ENSJJAG00000017646 #18	ENSJJAG00000016067 #18	Ssr2 (ENSJJAG00000024209) #19	Ubqln4 (ENSJJAG00000002118) #21	ENSJJAG00000021135 #22	Rab25 (ENSJJAG00000021013) #23	Mex3a (ENSJJAG00000020484) #24	Lmna (ENSJJAG00000019904) #25	Sema4a (ENSJJAG00000016229) #26	Slc25a44 (ENSJJAG00000001462) #27	Pmf1 (ENSJJAG00000013470) #28	ENSJJAG00000000652 #29	Paqr6 (ENSJJAG00000001367) #30	Smg5 (ENSJJAG00000022763) #31	Tmem79 (ENSJJAG00000023610) #32	ENSJJAG00000019201	Cct3 (ENSJJAG00000013939) #35	ENSJJAG00000017067	Mef2d (ENSJJAG00000011790)	Iqgap3 (ENSJJAG00000000649)
Lesser Egyptian jerboa	MODERN SPECIES	61	ENSJJAG00000014352	Smc2 (ENSJJAG00000024156)	ENSJJAG00000009857	ENSJJAG00000023304	Grin3a (ENSJJAG00000023914)	Rnf20 (ENSJJAG00000022147)	Aldob (ENSJJAG00000017193)	Zfp189 (ENSJJAG00000017677)	Mrpl50 (ENSJJAG00000015402)	Baat (ENSJJAG00000015081)	ENSJJAG00000022423	ENSJJAG00000023201	Plppr1 (ENSJJAG00000014625)	ENSJJAG00000018538	Cavin4 (ENSJJAG00000013719)	ENSJJAG00000011421 #22	ENSJJAG00000016219	Msantd3 (ENSJJAG00000019733)	Tex10 (ENSJJAG00000017725)	Invs (ENSJJAG00000020388)	Erp44 (ENSJJAG00000016276)	Stx17 (ENSJJAG00000014957)	Nr4a3 (ENSJJAG00000004481)	ENSJJAG00000003174	Alg2 (ENSJJAG00000004353)	Tgfbr1 (ENSJJAG00000008037)	ENSJJAG00000023162	Galnt12 (ENSJJAG00000008989)	Anks6 (ENSJJAG00000018199)	Tbc1d2 (ENSJJAG00000019681)	Coro2a (ENSJJAG00000022571)
Kangaroo rat	MODERN SPECIES	345	Pklr (ENSDORG00000011632)	ENSDORG00000028002	Fdps (ENSDORG00000005366)	ENSDORG00000024404	ENSDORG00000025813	Ash1l (ENSDORG00000025575)	Dap3 (ENSDORG00000003596) #12	Msto1 (ENSDORG00000029541) #13	Gon4l (ENSDORG00000003598) #14	Syt11 (ENSDORG00000023709) #15	Rit1 (ENSDORG00000014601) #16	Khdc4 (ENSDORG00000014602) #17	Arhgef2 (ENSDORG00000012162) #18	ENSDORG00000010536 #19	Ubqln4 (ENSDORG00000010538) #21	Lamtor2 (ENSDORG00000002923) #22	Rab25 (ENSDORG00000002922) #23	Mex3a (ENSDORG00000002921) #24	Lmna (ENSDORG00000002470) #25	Sema4a (ENSDORG00000008821) #26
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Hystricomorpha	ANCESTRAL SPECIES	45	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224.z.a #35	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	54	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224.y #35	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Guinea pig	MODERN SPECIES	10	HCN3 (ENSCPOG00000027026)	PKLR (ENSCPOG00000011202)	FDPS (ENSCPOG00000015363)	RUSC1 (ENSCPOG00000032934)	ASH1L (ENSCPOG00000004801)	DAP3 (ENSCPOG00000030924) #12	MSTO1 (ENSCPOG00000004857) #13	ENSCPOG00000004859 #14	SYT11 (ENSCPOG00000004866) #15	RIT1 (ENSCPOG00000004868) #16	KHDC4 (ENSCPOG00000004870) #17	ENSCPOG00000032356	ARHGEF2 (ENSCPOG00000025396) #18	SSR2 (ENSCPOG00000023729) #19	UBQLN4 (ENSCPOG00000002467) #21	LAMTOR2 (ENSCPOG00000032238) #22	RAB25 (ENSCPOG00000002472) #23	MEX3A (ENSCPOG00000020219) #24	LMNA (ENSCPOG00000023214) #25	SEMA4A (ENSCPOG00000015694) #26	SLC25A44 (ENSCPOG00000021129) #27	PMF1 (ENSCPOG00000015695) #28	BGLAP (ENSCPOG00000040505) #29	PAQR6 (ENSCPOG00000019726) #30	SMG5 (ENSCPOG00000015696) #31	TMEM79 (ENSCPOG00000033881) #32	GLMP (ENSCPOG00000032634) #33	CCT3 (ENSCPOG00000009131) #35	RHBG (ENSCPOG00000011135) #37	MEF2D (ENSCPOG00000036656)	IQGAP3 (ENSCPOG00000005361)
Hystricomorpha_b	ANCESTRAL SPECIES	61	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224.z.a #35	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Degu	MODERN SPECIES	73	PKLR (ENSODEG00000011272)	FDPS (ENSODEG00000010515)	ENSODEG00000010812	ASH1L (ENSODEG00000009920)	DAP3 (ENSODEG00000010674) #12	MSTO1 (ENSODEG00000011191) #13	ENSODEG00000010737	ENSODEG00000011008 #14	SYT11 (ENSODEG00000010870) #15	RIT1 (ENSODEG00000010128) #16	ENSODEG00000009528 #17	ENSODEG00000019992	ARHGEF2 (ENSODEG00000011373) #18	SSR2 (ENSODEG00000010659) #19	UBQLN4 (ENSODEG00000010901) #21	LAMTOR2 (ENSODEG00000010141) #22	RAB25 (ENSODEG00000009908) #23	MEX3A (ENSODEG00000009643) #24	LMNA (ENSODEG00000009369) #25	SEMA4A (ENSODEG00000009359) #26	SLC25A44 (ENSODEG00000009774) #27	PMF1 (ENSODEG00000011902) #28	BGLAP (ENSODEG00000010926) #29	PAQR6 (ENSODEG00000010747) #30	SMG5 (ENSODEG00000012237) #31	TMEM79 (ENSODEG00000012508) #32	GLMP (ENSODEG00000009800) #33	ENSODEG00000009974 #35	RHBG (ENSODEG00000009136) #37	MEF2D (ENSODEG00000010190)	IQGAP3 (ENSODEG00000010076)
Long-tailed chinchilla	MODERN SPECIES	252	CLK2 (ENSCLAG00000003873)	HCN3 (ENSCLAG00000005021)	PKLR (ENSCLAG00000005136)	FDPS (ENSCLAG00000005410)	RUSC1 (ENSCLAG00000005579)	ASH1L (ENSCLAG00000004536)	DAP3 (ENSCLAG00000005599) #12	MSTO1 (ENSCLAG00000006273) #13	ENSCLAG00000006556 #14	SYT11 (ENSCLAG00000013172) #15	RIT1 (ENSCLAG00000013305) #16	KHDC4 (ENSCLAG00000010544) #17	ARHGEF2 (ENSCLAG00000013596) #18	SSR2 (ENSCLAG00000003363) #19	UBQLN4 (ENSCLAG00000003519) #21	LAMTOR2 (ENSCLAG00000003700) #22	RAB25 (ENSCLAG00000003784) #23	MEX3A (ENSCLAG00000003842) #24	LMNA (ENSCLAG00000003894) #25	SEMA4A (ENSCLAG00000005297) #26	SLC25A44 (ENSCLAG00000005587) #27	PMF1 (ENSCLAG00000003672) #28	BGLAP (ENSCLAG00000003710) #29	PAQR6 (ENSCLAG00000003899) #30	SMG5 (ENSCLAG00000003983) #31	TMEM79 (ENSCLAG00000004142) #32	GLMP (ENSCLAG00000004192) #33	ENSCLAG00000004359 #35	RHBG (ENSCLAG00000004625) #37	MEF2D (ENSCLAG00000004702)	IQGAP3 (ENSCLAG00000004927)
Naked mole-rat female	MODERN SPECIES	10			ENSHGLG00000005618	ENSHGLG00000006300	ENSHGLG00000049863	ASH1L (ENSHGLG00000008090)	DAP3 (ENSHGLG00000013978) #12	MSTO1 (ENSHGLG00000018369) #13	ENSHGLG00000006556 #14	SYT11 (ENSHGLG00000032288) #15	ENSHGLG00000034706 #16	KHDC4 (ENSHGLG00000010495) #17	RXFP4 (ENSHGLG00000037004)	SSR2 (ENSHGLG00000035940) #19	UBQLN4 (ENSHGLG00000003684) #21	LAMTOR2 (ENSHGLG00000036352) #22	RAB25 (ENSHGLG00000005517) #23	MEX3A (ENSHGLG00000041429) #24	ENSHGLG00000036594 #25	SEMA4A (ENSHGLG00000003587) #26	SLC25A44 (ENSHGLG00000042222) #27	ENSHGLG00000007944 #29	PAQR6 (ENSHGLG00000015640) #30	SMG5 (ENSHGLG00000019152) #31	TMEM79 (ENSHGLG00000018185) #32	GLMP (ENSHGLG00000041332) #33	ENSHGLG00000003153 #35	RHBG (ENSHGLG00000005998) #37	MEF2D (ENSHGLG00000019055)	IQGAP3 (ENSHGLG00000018362)	NAXE (ENSHGLG00000007354)
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132.e #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Eurasian red squirrel	MODERN SPECIES		CLK2 (ENSSVLG00005019777)	HCN3 (ENSSVLG00005000099)	PKLR (ENSSVLG00005000101)	FDPS (ENSSVLG00005000103)	RUSC1 (ENSSVLG00005000107)	ENSSVLG00005000118	MSTO1 (ENSSVLG00005000136) #13	ENSSVLG00005000147 #14	ENSSVLG00005000171 #15	ENSSVLG00005000188 #16	KHDC4 (ENSSVLG00005000224) #17	RXFP4 (ENSSVLG00005000258)	ARHGEF2 (ENSSVLG00005000357) #18	SSR2 (ENSSVLG00005000552) #19	UBQLN4 (ENSSVLG00005000591) #21	LAMTOR2 (ENSSVLG00005000628) #22	RAB25 (ENSSVLG00005000653) #23	MEX3A (ENSSVLG00005000673) #24	LMNA (ENSSVLG00005000714) #25	SEMA4A (ENSSVLG00005000802) #26	SLC25A44 (ENSSVLG00005000872) #27	PMF1 (ENSSVLG00005000891) #28	BGLAP (ENSSVLG00005000913) #29	PAQR6 (ENSSVLG00005000936) #30	SMG5 (ENSSVLG00005000972) #31	ENSSVLG00005000998	GLMP (ENSSVLG00005001024) #33	CCT3 (ENSSVLG00005001076) #35	TSACC (ENSSVLG00005001124) #36	RHBG (ENSSVLG00005001146) #37	MEF2D (ENSSVLG00005001227)
Marmotini	ANCESTRAL SPECIES	33	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132.e #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Alpin marmot	MODERN SPECIES	85	HCN3 (ENSMMMG00000014457)	PKLR (ENSMMMG00000014412)	FDPS (ENSMMMG00000014395)	ENSMMMG00000014387	ASH1L (ENSMMMG00000014324)	DAP3 (ENSMMMG00000014245) #12	MSTO1 (ENSMMMG00000014213) #13	ENSMMMG00000014163 #14	SYT11 (ENSMMMG00000014151) #15	ENSMMMG00000014145 #16	KHDC4 (ENSMMMG00000014104) #17	RXFP4 (ENSMMMG00000014101)	ARHGEF2 (ENSMMMG00000013899) #18	SSR2 (ENSMMMG00000013889) #19	UBQLN4 (ENSMMMG00000013874) #21	LAMTOR2 (ENSMMMG00000013864) #22	RAB25 (ENSMMMG00000013857) #23	MEX3A (ENSMMMG00000013855) #24	LMNA (ENSMMMG00000013831) #25	SEMA4A (ENSMMMG00000013785) #26	SLC25A44 (ENSMMMG00000013773) #27	ENSMMMG00000013758	BGLAP (ENSMMMG00000013734) #29	PAQR6 (ENSMMMG00000013724) #30	SMG5 (ENSMMMG00000013706) #31	TMEM79 (ENSMMMG00000013693) #32	GLMP (ENSMMMG00000013644) #33	CCT3 (ENSMMMG00000013571) #35	TSACC (ENSMMMG00000013564) #36	RHBG (ENSMMMG00000013553) #37	ENSMMMG00000013541
Marmotini_b	ANCESTRAL SPECIES	37	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132.e #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Squirrel	MODERN SPECIES	180	HCN3 (ENSSTOG00000008989)	PKLR (ENSSTOG00000022480)	ENSSTOG00000004475	RUSC1 (ENSSTOG00000004516)	ASH1L (ENSSTOG00000019952)	DAP3 (ENSSTOG00000004627) #12	MSTO1 (ENSSTOG00000004655) #13	ENSSTOG00000004664 #14	SYT11 (ENSSTOG00000004720) #15	RIT1 (ENSSTOG00000021028) #16	KHDC4 (ENSSTOG00000004732) #17	RXFP4 (ENSSTOG00000000616)	ARHGEF2 (ENSSTOG00000000620) #18	SSR2 (ENSSTOG00000028971) #19	UBQLN4 (ENSSTOG00000020043) #21	LAMTOR2 (ENSSTOG00000023389) #22	RAB25 (ENSSTOG00000000634) #23	MEX3A (ENSSTOG00000024275) #24	LMNA (ENSSTOG00000001758) #25	SEMA4A (ENSSTOG00000028050) #26	SLC25A44 (ENSSTOG00000001764) #27	PMF1 (ENSSTOG00000001768) #28	ENSSTOG00000034466	BGLAP (ENSSTOG00000027908) #29	PAQR6 (ENSSTOG00000001772) #30	SMG5 (ENSSTOG00000001780) #31	TMEM79 (ENSSTOG00000026140) #32	GLMP (ENSSTOG00000015763) #33	CCT3 (ENSSTOG00000001798) #35	TSACC (ENSSTOG00000001810) #36	RHBG (ENSSTOG00000028396) #37
Arctic ground squirrel	MODERN SPECIES	309	HCN3 (ENSUPAG00010002732)	PKLR (ENSUPAG00010002743)	FDPS (ENSUPAG00010002775)	RUSC1 (ENSUPAG00010002787)	ASH1L (ENSUPAG00010002818)	ENSUPAG00010002886 #12	MSTO1 (ENSUPAG00010002943) #13	ENSUPAG00010002975 #14	SYT11 (ENSUPAG00010003045) #15	ENSUPAG00010003055 #16	KHDC4 (ENSUPAG00010003067) #17	ENSUPAG00010003101	ARHGEF2 (ENSUPAG00010003114) #18	SSR2 (ENSUPAG00010003598) #19	UBQLN4 (ENSUPAG00010003613) #21	LAMTOR2 (ENSUPAG00010003634) #22	RAB25 (ENSUPAG00010003640) #23	MEX3A (ENSUPAG00010003653) #24	LMNA (ENSUPAG00010003669) #25	SEMA4A (ENSUPAG00010003712) #26	SLC25A44 (ENSUPAG00010004013) #27	PMF1 (ENSUPAG00010004034) #28	BGLAP (ENSUPAG00010004045) #29	ENSUPAG00010004061 #30	SMG5 (ENSUPAG00010004091) #31	TMEM79 (ENSUPAG00010004129) #32	GLMP (ENSUPAG00010004142) #33	CCT3 (ENSUPAG00010004189) #35	TSACC (ENSUPAG00010004234) #36	RHBG (ENSUPAG00010004243) #37	MEF2D (ENSUPAG00010004263)
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Carnivora	ANCESTRAL SPECIES	14	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Caniformia	ANCESTRAL SPECIES	10	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Red fox	MODERN SPECIES	23	CLK2 (ENSVVUG00000003884)	HCN3 (ENSVVUG00000003915)	PKLR (ENSVVUG00000003930)	FDPS (ENSVVUG00000004041)	RUSC1 (ENSVVUG00000004055)	ASH1L (ENSVVUG00000004069)	DAP3 (ENSVVUG00000004090) #12	MSTO1 (ENSVVUG00000004113) #13	ENSVVUG00000004239 #14	SYT11 (ENSVVUG00000005667) #15	RIT1 (ENSVVUG00000005671) #16	KHDC4 (ENSVVUG00000005679) #17	ARHGEF2 (ENSVVUG00000005746) #18	SSR2 (ENSVVUG00000005756) #19	UBQLN4 (ENSVVUG00000005763) #21	LAMTOR2 (ENSVVUG00000005816) #22	RAB25 (ENSVVUG00000005821) #23	MEX3A (ENSVVUG00000005834) #24	LMNA (ENSVVUG00000005843) #25	ENSVVUG00000005853 #26	ENSVVUG00000005856 #26	SLC25A44 (ENSVVUG00000005863) #27	ENSVVUG00000005870	BGLAP (ENSVVUG00000005877) #29	PAQR6 (ENSVVUG00000005883) #30	SMG5 (ENSVVUG00000005887) #31	TMEM79 (ENSVVUG00000005892) #32	GLMP (ENSVVUG00000005893) #33	CCT3 (ENSVVUG00000005916) #35	ENSVVUG00000005925 #36	RHBG (ENSVVUG00000005930) #37
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Dog	MODERN SPECIES	35	CLK2 (ENSCAFG00845012282)	HCN3 (ENSCAFG00845012249)	PKLR (ENSCAFG00845012059)	FDPS (ENSCAFG00845011910)	RUSC1 (ENSCAFG00845011825)	ASH1L (ENSCAFG00845011740)	DAP3 (ENSCAFG00845011528) #12	MSTO1 (ENSCAFG00845011422) #13	ENSCAFG00845011319 #14	SYT11 (ENSCAFG00845011235) #15	RIT1 (ENSCAFG00845011170) #16	KHDC4 (ENSCAFG00845011090) #17	ARHGEF2 (ENSCAFG00845010726) #18	SSR2 (ENSCAFG00845010530) #19	UBQLN4 (ENSCAFG00845010456) #21	LAMTOR2 (ENSCAFG00845010372) #22	RAB25 (ENSCAFG00845010319) #23	MEX3A (ENSCAFG00845010291) #24	LMNA (ENSCAFG00845010163) #25	SEMA4A (ENSCAFG00845010023) #26	SLC25A44 (ENSCAFG00845009963) #27	BGLAP (ENSCAFG00845009909) #29	SMG5 (ENSCAFG00845009772) #31	PAQR6 (ENSCAFG00845009665) #30	TMEM79 (ENSCAFG00845009619) #32	GLMP (ENSCAFG00845009558) #33	CCT3 (ENSCAFG00845009435) #35	RHBG (ENSCAFG00845009336) #37	MEF2D (ENSCAFG00845009027)	IQGAP3 (ENSCAFG00845008852)	ENSCAFG00845008793
Dingo	MODERN SPECIES	271	CLK2 (ENSCAFG00020007098)	HCN3 (ENSCAFG00020007064)	PKLR (ENSCAFG00020006996)	FDPS (ENSCAFG00020006959)	ENSCAFG00020006949	ASH1L (ENSCAFG00020006713)	DAP3 (ENSCAFG00020006662) #12	MSTO1 (ENSCAFG00020006658) #13	ENSCAFG00020006650 #14	SYT11 (ENSCAFG00020006484) #15	RIT1 (ENSCAFG00020006481) #16	KHDC4 (ENSCAFG00020006317) #17	ARHGEF2 (ENSCAFG00020006291) #18	SSR2 (ENSCAFG00020006268) #19	UBQLN4 (ENSCAFG00020006198) #21	ENSCAFG00020006183 #22	RAB25 (ENSCAFG00020006179) #23	MEX3A (ENSCAFG00020006171) #24	LMNA (ENSCAFG00020006147) #25	SEMA4A (ENSCAFG00020006101) #26	SLC25A44 (ENSCAFG00020006099) #27	ENSCAFG00020006096	BGLAP (ENSCAFG00020006091) #29	PAQR6 (ENSCAFG00020006075) #30	SMG5 (ENSCAFG00020006061) #31	TMEM79 (ENSCAFG00020006056) #32	GLMP (ENSCAFG00020006053) #33	CCT3 (ENSCAFG00020005487) #35	TSACC (ENSCAFG00020005438) #36	RHBG (ENSCAFG00020005431) #37	MEF2D (ENSCAFG00020005413)
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Ursidae	ANCESTRAL SPECIES	4	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074.p	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.f #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125.d #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Ursus	ANCESTRAL SPECIES	72	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074.p	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.f #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125.d #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22
American black bear	MODERN SPECIES	23						DAP3 (ENSUAMG00000013808) #12	ENSUAMG00000013824 #14	ENSUAMG00000013828 #14	ENSUAMG00000013830 #14	SYT11 (ENSUAMG00000013841) #15	RIT1 (ENSUAMG00000013852) #16	KHDC4 (ENSUAMG00000013863) #17	ARHGEF2 (ENSUAMG00000013991) #18	SSR2 (ENSUAMG00000015694) #19	UBQLN4 (ENSUAMG00000015695) #21	ENSUAMG00000015696 #22
Giant Panda	MODERN SPECIES	18	SCAMP3 (ENSAMEG00000024431)	CLK2 (ENSAMEG00000000065)	HCN3 (ENSAMEG00000000063)	PKLR (ENSAMEG00000000055)	FDPS (ENSAMEG00000000050)	ENSAMEG00000026390	ASH1L (ENSAMEG00000000049)	DAP3 (ENSAMEG00000000047) #12	MSTO1 (ENSAMEG00000000045) #13	ENSAMEG00000000043 #14	SYT11 (ENSAMEG00000000041) #15	RIT1 (ENSAMEG00000000040) #16	KHDC4 (ENSAMEG00000000037) #17	ARHGEF2 (ENSAMEG00000000035) #18	SSR2 (ENSAMEG00000014198) #19	ENSAMEG00000028885 #22	RAB25 (ENSAMEG00000014249) #23	MEX3A (ENSAMEG00000014265) #24	LMNA (ENSAMEG00000014270) #25	SEMA4A (ENSAMEG00000014336) #26	SLC25A44 (ENSAMEG00000014397) #27	PMF1 (ENSAMEG00000014403) #28	BGLAP (ENSAMEG00000014417) #29	PAQR6 (ENSAMEG00000014419) #30	SMG5 (ENSAMEG00000014458) #31	TMEM79 (ENSAMEG00000014512) #32	GLMP (ENSAMEG00000014517) #33	CCT3 (ENSAMEG00000014524) #35	TSACC (ENSAMEG00000025844) #36	RHBG (ENSAMEG00000014562) #37	MEF2D (ENSAMEG00000014630)
Mustelinae	ANCESTRAL SPECIES	23	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074.m	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Ferret	MODERN SPECIES	441	CLK2 (ENSMPUG00000005543)	HCN3 (ENSMPUG00000005526)	PKLR (ENSMPUG00000005509)	ENSMPUG00000005496	ENSMPUG00000005484	ASH1L (ENSMPUG00000005465)	DAP3 (ENSMPUG00000005314) #12	MSTO1 (ENSMPUG00000005298) #13	ENSMPUG00000005274 #14	SYT11 (ENSMPUG00000005268) #15	RIT1 (ENSMPUG00000005245) #16	KHDC4 (ENSMPUG00000005186) #17	ARHGEF2 (ENSMPUG00000005016) #18	SSR2 (ENSMPUG00000004963) #19	UBQLN4 (ENSMPUG00000004855) #21	LAMTOR2 (ENSMPUG00000004826) #22	RAB25 (ENSMPUG00000004790) #23	MEX3A (ENSMPUG00000004774) #24	LMNA (ENSMPUG00000004761) #25	SEMA4A (ENSMPUG00000004742) #26	SLC25A44 (ENSMPUG00000004717) #27	PMF1 (ENSMPUG00000004672) #28	BGLAP (ENSMPUG00000004628) #29	PAQR6 (ENSMPUG00000004566) #30	SMG5 (ENSMPUG00000004546) #31	TMEM79 (ENSMPUG00000004531) #32	GLMP (ENSMPUG00000004537) #33	CCT3 (ENSMPUG00000004401) #35	TSACC (ENSMPUG00000004391) #36	RHBG (ENSMPUG00000004385) #37	ENSMPUG00000018432
American mink	MODERN SPECIES	260	CLK2 (ENSNVIG00000019445)	HCN3 (ENSNVIG00000019481)	PKLR (ENSNVIG00000019507)	FDPS (ENSNVIG00000019613)	ENSNVIG00000019622	ASH1L (ENSNVIG00000019642)	DAP3 (ENSNVIG00000019822) #12	MSTO1 (ENSNVIG00000019933) #13	ENSNVIG00000019964 #14	SYT11 (ENSNVIG00000020257) #15	RIT1 (ENSNVIG00000020272) #16	ENSNVIG00000020342 #17	ARHGEF2 (ENSNVIG00000020356) #18	SSR2 (ENSNVIG00000020385) #19	UBQLN4 (ENSNVIG00000020416) #21	LAMTOR2 (ENSNVIG00000020427) #22	RAB25 (ENSNVIG00000020433) #23	LMNA (ENSNVIG00000020473) #25	SEMA4A (ENSNVIG00000020558) #26	SLC25A44 (ENSNVIG00000020603) #27	ENSNVIG00000020609	BGLAP (ENSNVIG00000020619) #29	ENSNVIG00000020635 #30	SMG5 (ENSNVIG00000020654) #31	ENSNVIG00000020679	GLMP (ENSNVIG00000020700) #33	CCT3 (ENSNVIG00000020748) #35	TSACC (ENSNVIG00000020774) #36	RHBG (ENSNVIG00000020780) #37	ENSNVIG00000020791	IQGAP3 (ENSNVIG00000020810)
Felidae	ANCESTRAL SPECIES	11	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Cat	MODERN SPECIES	248	ENSFCAG00000047278	FDPS (ENSFCAG00000039350)	RUSC1 (ENSFCAG00000024900)	ASH1L (ENSFCAG00000012088)	DAP3 (ENSFCAG00000022787) #12	MSTO1 (ENSFCAG00000030966) #13	ENSFCAG00000012133 #14	SYT11 (ENSFCAG00000029675) #15	ENSFCAG00000037260 #16	RIT1 (ENSFCAG00000044860) #16	KHDC4 (ENSFCAG00000012137) #17	ARHGEF2 (ENSFCAG00000030294) #18	SSR2 (ENSFCAG00000043703) #19	ENSFCAG00000050566	UBQLN4 (ENSFCAG00000011772) #21	LAMTOR2 (ENSFCAG00000028596) #22	RAB25 (ENSFCAG00000011775) #23	MEX3A (ENSFCAG00000044236) #24	LMNA (ENSFCAG00000011776) #25	SEMA4A (ENSFCAG00000011779) #26	SLC25A44 (ENSFCAG00000011780) #27	PMF1 (ENSFCAG00000011781) #28	BGLAP (ENSFCAG00000048978) #29	PAQR6 (ENSFCAG00000000759) #30	SMG5 (ENSFCAG00000011783) #31	TMEM79 (ENSFCAG00000011787) #32	GLMP (ENSFCAG00000011788) #33	CCT3 (ENSFCAG00000011789) #35	TSACC (ENSFCAG00000029523) #36	RHBG (ENSFCAG00000011790) #37	MEF2D (ENSFCAG00000024020)
Panthera	ANCESTRAL SPECIES	38	ENSGT00940000160917	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Tiger	MODERN SPECIES	274	ENSPTIG00000013508	SCAMP3 (ENSPTIG00000011445)	CLK2 (ENSPTIG00000010873)	HCN3 (ENSPTIG00000009244)	ENSPTIG00000008406	ASH1L (ENSPTIG00000019713)	DAP3 (ENSPTIG00000015443) #12	ENSPTIG00000013227 #14	ENSPTIG00000007985 #14	SYT11 (ENSPTIG00000007723) #15	RIT1 (ENSPTIG00000007045) #16	KHDC4 (ENSPTIG00000004498) #17	ENSPTIG00000001215 #18	SSR2 (ENSPTIG00000022102) #19	UBQLN4 (ENSPTIG00000022083) #21	LAMTOR2 (ENSPTIG00000022068) #22	RAB25 (ENSPTIG00000022049) #23	ENSPTIG00000021888 #25	SEMA4A (ENSPTIG00000016788) #26	SLC25A44 (ENSPTIG00000011099) #27	SMG5 (ENSPTIG00000007892) #31	TMEM79 (ENSPTIG00000007414) #32	GLMP (ENSPTIG00000004054) #33	CCT3 (ENSPTIG00000018610) #35	TSACC (ENSPTIG00000016816) #36	RHBG (ENSPTIG00000015826) #37	IQGAP3 (ENSPTIG00000013068)	TTC24 (ENSPTIG00000010925)	NAXE (ENSPTIG00000009667)	GPATCH4 (ENSPTIG00000006717)	ENSPTIG00000006345
Panthera_a	ANCESTRAL SPECIES	37	ENSGT00940000160917	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
leopard	MODERN SPECIES	138	CLK2 (ENSPPRG00000023511)	HCN3 (ENSPPRG00000021359)	PKLR (ENSPPRG00000019731)	FDPS (ENSPPRG00000017484)	ENSPPRG00000015592	ASH1L (ENSPPRG00000014648)	ENSPPRG00000011971	DAP3 (ENSPPRG00000011800) #12	ENSPPRG00000008799 #14	SYT11 (ENSPPRG00000000652) #15	RIT1 (ENSPPRG00000000399) #16	KHDC4 (ENSPPRG00000021149) #17	ARHGEF2 (ENSPPRG00000018064) #18	SSR2 (ENSPPRG00000009542) #19	UBQLN4 (ENSPPRG00000008090) #21	LAMTOR2 (ENSPPRG00000007518) #22	RAB25 (ENSPPRG00000006611) #23	MEX3A (ENSPPRG00000006585) #24	LMNA (ENSPPRG00000003442) #25	SEMA4A (ENSPPRG00000024539) #26	ENSPPRG00000017448 #27	ENSPPRG00000016604 #27	ENSPPRG00000015181	BGLAP (ENSPPRG00000013703) #29	PAQR6 (ENSPPRG00000013590) #30	ENSPPRG00000012440 #30	SMG5 (ENSPPRG00000011901) #31	TMEM79 (ENSPPRG00000011226) #32	GLMP (ENSPPRG00000010044) #33	CCT3 (ENSPPRG00000008924) #35	TSACC (ENSPPRG00000007969) #36
lion	MODERN SPECIES	44	SCAMP3 (ENSPLOG00000009300)	CLK2 (ENSPLOG00000008926)	HCN3 (ENSPLOG00000008852)	PKLR (ENSPLOG00000008753)	FDPS (ENSPLOG00000008651)	RUSC1 (ENSPLOG00000008579)	ASH1L (ENSPLOG00000008458)	ENSPLOG00000008379 #12	ENSPLOG00000008203 #14	SYT11 (ENSPLOG00000008151) #15	RIT1 (ENSPLOG00000008053) #16	KHDC4 (ENSPLOG00000007865) #17	ARHGEF2 (ENSPLOG00000007611) #18	SSR2 (ENSPLOG00000007527) #19	UBQLN4 (ENSPLOG00000007496) #21	LAMTOR2 (ENSPLOG00000007417) #22	RAB25 (ENSPLOG00000007385) #23	MEX3A (ENSPLOG00000007367) #24	LMNA (ENSPLOG00000007050) #25	SEMA4A (ENSPLOG00000006968) #26	SLC25A44 (ENSPLOG00000006937) #27	ENSPLOG00000006903	BGLAP (ENSPLOG00000006890) #29	PAQR6 (ENSPLOG00000006831) #30	SMG5 (ENSPLOG00000006798) #31	ENSPLOG00000006758	GLMP (ENSPLOG00000006693) #33	CCT3 (ENSPLOG00000006587) #35	TSACC (ENSPLOG00000006484) #36	RHBG (ENSPLOG00000006433) #37	MEF2D (ENSPLOG00000006383)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Equus	ANCESTRAL SPECIES	3	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Horse	MODERN SPECIES	26	HCN3 (ENSECAG00000019972)	PKLR (ENSECAG00000013836)	FDPS (ENSECAG00000039158)	RUSC1 (ENSECAG00000023262)	ASH1L (ENSECAG00000018527)	ENSECAG00000049880	DAP3 (ENSECAG00000016401) #12	MSTO1 (ENSECAG00000008798) #13	SYT11 (ENSECAG00000019725) #15	ENSECAG00000019775 #14	RIT1 (ENSECAG00000015714) #16	KHDC4 (ENSECAG00000011569) #17	ARHGEF2 (ENSECAG00000013759) #18	SSR2 (ENSECAG00000013740) #19	UBQLN4 (ENSECAG00000009993) #21	LAMTOR2 (ENSECAG00000009193) #22	RAB25 (ENSECAG00000023191) #23	MEX3A (ENSECAG00000007279) #24	LMNA (ENSECAG00000011097) #25	SEMA4A (ENSECAG00000008622) #26	SLC25A44 (ENSECAG00000007577) #27	ENSECAG00000005938	SMG5 (ENSECAG00000001389) #31	TMEM79 (ENSECAG00000001165) #32	GLMP (ENSECAG00000024928) #33	CCT3 (ENSECAG00000020633) #35	TSACC (ENSECAG00000020624) #36	RHBG (ENSECAG00000013494) #37	MEF2D (ENSECAG00000020356)	ENSECAG00000053296	IQGAP3 (ENSECAG00000020111)
Donkey	MODERN SPECIES	17	ENSEASG00005019246	ENSEASG00005030134	ENSEASG00005010486	ENSEASG00005010484	ENSEASG00005019185	ENSEASG00005024932	DAP3 (ENSEASG00005019165) #12	ENSEASG00005019163 #13	ENSEASG00005019154 #14	SYT11 (ENSEASG00005019151) #15	RIT1 (ENSEASG00005019149) #16	KHDC4 (ENSEASG00005019143) #17	ARHGEF2 (ENSEASG00005019138) #18	SSR2 (ENSEASG00005019136) #19	UBQLN4 (ENSEASG00005019135) #21	LAMTOR2 (ENSEASG00005031172) #22	RAB25 (ENSEASG00005019133) #23	MEX3A (ENSEASG00005031469) #24	LMNA (ENSEASG00005019130) #25	SEMA4A (ENSEASG00005019129) #26	SLC25A44 (ENSEASG00005019128) #27	ENSEASG00005019127 #29	PAQR6 (ENSEASG00005019125) #30	SMG5 (ENSEASG00005019122) #31	TMEM79 (ENSEASG00005019119) #32	GLMP (ENSEASG00005019116) #33	CCT3 (ENSEASG00005019113) #35	TSACC (ENSEASG00005019110) #36	RHBG (ENSEASG00005019109) #37	MEF2D (ENSEASG00005019100)	IQGAP3 (ENSEASG00005018530)
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Megabat	MODERN SPECIES	3199							ENSPVAG00000010316	ENSPVAG00000010318 #14	SYT11 (ENSPVAG00000010320) #15	RIT1 (ENSPVAG00000010321) #16	KHDC4 (ENSPVAG00000010322) #17	RXFP4 (ENSPVAG00000010323)	ARHGEF2 (ENSPVAG00000010324) #18	SSR2 (ENSPVAG00000010325) #19	UBQLN4 (ENSPVAG00000010326) #21	LAMTOR2 (ENSPVAG00000010328) #22	RAB25 (ENSPVAG00000010331) #23	MEX3A (ENSPVAG00000010333) #24
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Microbat	DUPLICATION
Microbat	MODERN SPECIES	937	TMEM232 (ENSMLUG00000009460)	ENSMLUG00000026846	MAN2A1 (ENSMLUG00000013107)	PJA2 (ENSMLUG00000011060)	ENSMLUG00000028567	ENSMLUG00000011004	ENSMLUG00000000367	ENSMLUG00000025300	ENSMLUG00000028326	EFNA5 (ENSMLUG00000009930)	NUDT12 (ENSMLUG00000014521)	ENSMLUG00000026844	ENSMLUG00000025570	MACIR (ENSMLUG00000000868)	PPIP5K2 (ENSMLUG00000000847)	ENSMLUG00000024588 #22	GIN1 (ENSMLUG00000025218)	PAM (ENSMLUG00000000826)	ENSMLUG00000003988	SLCO4C1 (ENSMLUG00000001943)	ST8SIA4 (ENSMLUG00000016346)	FAM174A (ENSMLUG00000009103)	CHD1 (ENSMLUG00000016014)	RGMB (ENSMLUG00000000422)	ENSMLUG00000027844	ENSMLUG00000023104	RIOK2 (ENSMLUG00000016113)	LIX1 (ENSMLUG00000016110)	LNPEP (ENSMLUG00000016096)	ERAP2 (ENSMLUG00000016082)	ERAP1 (ENSMLUG00000016064)
Microbat	MODERN SPECIES	1148	CLK2 (ENSMLUG00000013410)	HCN3 (ENSMLUG00000013418)	PKLR (ENSMLUG00000013422)	RUSC1 (ENSMLUG00000013446)	ASH1L (ENSMLUG00000013461)	DAP3 (ENSMLUG00000005848) #12	MSTO1 (ENSMLUG00000009855) #13	ENSMLUG00000009868 #14	SYT11 (ENSMLUG00000009918) #15	RIT1 (ENSMLUG00000009935) #16	KHDC4 (ENSMLUG00000009967) #17	RXFP4 (ENSMLUG00000010023)	ARHGEF2 (ENSMLUG00000010039) #18	SSR2 (ENSMLUG00000010102) #19	UBQLN4 (ENSMLUG00000010131) #21	ENSMLUG00000023871 #22	RAB25 (ENSMLUG00000010153) #23	MEX3A (ENSMLUG00000010185) #24	LMNA (ENSMLUG00000026412) #25	SEMA4A (ENSMLUG00000000639) #26	SLC25A44 (ENSMLUG00000008481) #27	PMF1 (ENSMLUG00000008489) #28	BGLAP (ENSMLUG00000029723) #29	PAQR6 (ENSMLUG00000008500) #30	SMG5 (ENSMLUG00000008518) #31	TMEM79 (ENSMLUG00000008551) #32	GLMP (ENSMLUG00000008556) #33	CCT3 (ENSMLUG00000015678) #35	RHBG (ENSMLUG00000008585) #37	ENSMLUG00000030150	ENSMLUG00000029510
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	24	ENSRFEG00010014210	ENSRFEG00010014135	ENSRFEG00010014112	ENSRFEG00010014071	NRXN3 (ENSRFEG00010013015)	ENSRFEG00010012930	CEP128 (ENSRFEG00010012759)	TSHR (ENSRFEG00010012154)	GTF2A1 (ENSRFEG00010012049)	ENSRFEG00010011999	STON2 (ENSRFEG00010011966)	SEL1L (ENSRFEG00010011889)	ENSRFEG00010011871	ENSRFEG00010011830	FLRT2 (ENSRFEG00010011812)	ENSRFEG00010011765 #22	GALC (ENSRFEG00010011294)	GPR65 (ENSRFEG00010011274)	ENSRFEG00010011219	KCNK10 (ENSRFEG00010011135)	ENSRFEG00010011077	SPATA7 (ENSRFEG00010010944)	PTPN21 (ENSRFEG00010010878)	ZC3H14 (ENSRFEG00010010356)	EML5 (ENSRFEG00010010199)	TTC8 (ENSRFEG00010009898)	FOXN3 (ENSRFEG00010009812)	EFCAB11 (ENSRFEG00010009733)	TDP1 (ENSRFEG00010009605)	ENSRFEG00010009545	NRDE2 (ENSRFEG00010009498)
Greater horseshoe bat	MODERN SPECIES	14	HCN3 (ENSRFEG00010012686)	PKLR (ENSRFEG00010012731)	FDPS (ENSRFEG00010012958)	RUSC1 (ENSRFEG00010013073)	ASH1L (ENSRFEG00010013223)	DAP3 (ENSRFEG00010013351) #12	MSTO1 (ENSRFEG00010013673) #13	ENSRFEG00010013759 #14	SYT11 (ENSRFEG00010014057) #15	RIT1 (ENSRFEG00010014140) #16	KHDC4 (ENSRFEG00010014273) #17	RXFP4 (ENSRFEG00010014369)	ARHGEF2 (ENSRFEG00010014408) #18	SSR2 (ENSRFEG00010014692) #19	UBQLN4 (ENSRFEG00010014900) #21	ENSRFEG00010014949 #22	RAB25 (ENSRFEG00010015038) #23	MEX3A (ENSRFEG00010015157) #24	LMNA (ENSRFEG00010015236) #25	SEMA4A (ENSRFEG00010015377) #26	SLC25A44 (ENSRFEG00010015502) #27	PMF1 (ENSRFEG00010015555) #28	BGLAP (ENSRFEG00010015652) #29	PAQR6 (ENSRFEG00010015723) #30	SMG5 (ENSRFEG00010015872) #31	TMEM79 (ENSRFEG00010015938) #32	GLMP (ENSRFEG00010016041) #33	CCT3 (ENSRFEG00010010707) #35	TSACC (ENSRFEG00010010848) #36	RHBG (ENSRFEG00010010915) #37	MEF2D (ENSRFEG00010010994)
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Suina	ANCESTRAL SPECIES	8	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00980000200110	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Pig	MODERN SPECIES	12	PKLR (ENSSSCG00000026149)	FDPS (ENSSSCG00000006512)	RUSC1 (ENSSSCG00000006511)	ENSSSCG00000040632	ASH1L (ENSSSCG00000006508)	DAP3 (ENSSSCG00000006507) #12	MSTO1 (ENSSSCG00000006157) #13	ENSSSCG00000006510 #14	SYT11 (ENSSSCG00000006506) #15	RIT1 (ENSSSCG00000023991) #16	KHDC4 (ENSSSCG00000006504) #17	RXFP4 (ENSSSCG00000006503)	ARHGEF2 (ENSSSCG00000006502) #18	SSR2 (ENSSSCG00000006501) #19	UBQLN4 (ENSSSCG00000006500) #21	LAMTOR2 (ENSSSCG00000006499) #22	RAB25 (ENSSSCG00000039186) #23	MEX3A (ENSSSCG00000006497) #24	LMNA (ENSSSCG00000006496) #25	SEMA4A (ENSSSCG00000006495) #26	SLC25A44 (ENSSSCG00000006494) #27	PMF1 (ENSSSCG00000052919)	BGLAP (ENSSSCG00000055767) #29	PAQR6 (ENSSSCG00000006491) #30	SMG5 (ENSSSCG00000006490) #31	TMEM79 (ENSSSCG00000006489) #32	GLMP (ENSSSCG00000006488) #33	CCT3 (ENSSSCG00000006487) #35	TSACC (ENSSSCG00000006486) #36	RHBG (ENSSSCG00000035121) #37	MEF2D (ENSSSCG00000006482)
Chacoan peccary	MODERN SPECIES	139	PKLR (ENSCWAG00000020577)	FDPS (ENSCWAG00000020618)	RUSC1 (ENSCWAG00000020663)	ASH1L (ENSCWAG00000020727)	ENSCWAG00000020755	DAP3 (ENSCWAG00000020775) #12	MSTO1 (ENSCWAG00000020845) #13	ENSCWAG00000020896 #14	SYT11 (ENSCWAG00000020979) #15	RIT1 (ENSCWAG00000020995) #16	KHDC4 (ENSCWAG00000007841) #17	ENSCWAG00000007912	ARHGEF2 (ENSCWAG00000007966) #18	SSR2 (ENSCWAG00000008262) #19	UBQLN4 (ENSCWAG00000008403) #21	LAMTOR2 (ENSCWAG00000008520) #22	RAB25 (ENSCWAG00000008570) #23	MEX3A (ENSCWAG00000008643) #24	LMNA (ENSCWAG00000008705) #25	SEMA4A (ENSCWAG00000009047) #26	SLC25A44 (ENSCWAG00000009427) #27	ENSCWAG00000009485	BGLAP (ENSCWAG00000009559) #29	PAQR6 (ENSCWAG00000009611) #30	SMG5 (ENSCWAG00000009746) #31	ENSCWAG00000009845	GLMP (ENSCWAG00000009920) #33	CCT3 (ENSCWAG00000010037) #35	TSACC (ENSCWAG00000010146) #36	RHBG (ENSCWAG00000010166) #37	MEF2D (ENSCWAG00000010285)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Camelidae	ANCESTRAL SPECIES	6	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Arabian camel	MODERN SPECIES	13	FDPS (ENSCDRG00005008269)	RUSC1 (ENSCDRG00005008367)	ASH1L (ENSCDRG00005008672)	ENSCDRG00005008918	DAP3 (ENSCDRG00005008986) #12	ENSCDRG00005009290 #14	ENSCDRG00005009473 #14	MSTO1 (ENSCDRG00005009513) #13	SYT11 (ENSCDRG00005009687) #15	RIT1 (ENSCDRG00005009734) #16	ENSCDRG00005009887	RXFP4 (ENSCDRG00005009989)	ARHGEF2 (ENSCDRG00005010064) #18	SSR2 (ENSCDRG00005010971) #19	UBQLN4 (ENSCDRG00005011159) #21	LAMTOR2 (ENSCDRG00005011283) #22	RAB25 (ENSCDRG00005011364) #23	MEX3A (ENSCDRG00005011401) #24	LMNA (ENSCDRG00005011469) #25	SEMA4A (ENSCDRG00005011665) #26	SLC25A44 (ENSCDRG00005011792) #27	BGLAP (ENSCDRG00005011888) #29	PAQR6 (ENSCDRG00005011936) #30	SMG5 (ENSCDRG00005012076) #31	TMEM79 (ENSCDRG00005012417) #32	GLMP (ENSCDRG00005012477) #33	CCT3 (ENSCDRG00005012596) #35	TSACC (ENSCDRG00005012775) #36	RHBG (ENSCDRG00005012851) #37	MEF2D (ENSCDRG00005012987)	IQGAP3 (ENSCDRG00005013249)
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.i.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Yarkand deer	MODERN SPECIES	12	CLK2 (ENSCHYG00000004875)	HCN3 (ENSCHYG00000004855)	PKLR (ENSCHYG00000004833)	FDPS (ENSCHYG00000026456)	RUSC1 (ENSCHYG00000026489)	ASH1L (ENSCHYG00000026415)	ENSCHYG00000026325 #12	MSTO1 (ENSCHYG00000026231) #13	SYT11 (ENSCHYG00000026203) #15	RIT1 (ENSCHYG00000026149) #16	KHDC4 (ENSCHYG00000025994) #17	ENSCHYG00000025955	ARHGEF2 (ENSCHYG00000025091) #18	SSR2 (ENSCHYG00000024941) #19	UBQLN4 (ENSCHYG00000024829) #21	ENSCHYG00000024792 #22	RAB25 (ENSCHYG00000024758) #23	MEX3A (ENSCHYG00000024742) #24	LMNA (ENSCHYG00000024365) #25	SEMA4A (ENSCHYG00000024199) #26	SLC25A44 (ENSCHYG00000024104) #27	ENSCHYG00000024011	ENSCHYG00000023870 #30	SMG5 (ENSCHYG00000023680) #31	TMEM79 (ENSCHYG00000023640) #32	GLMP (ENSCHYG00000023522) #33	CCT3 (ENSCHYG00000023340) #35	TSACC (ENSCHYG00000023310) #36	RHBG (ENSCHYG00000023227) #37	MEF2D (ENSCHYG00000022984)	IQGAP3 (ENSCHYG00000022712)
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.i.a.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Siberian musk deer	MODERN SPECIES	1202	PKLR (ENSMMSG00000007243)	FDPS (ENSMMSG00000007131)	RUSC1 (ENSMMSG00000007079)	ASH1L (ENSMMSG00000006966)	DAP3 (ENSMMSG00000006783) #12	MSTO1 (ENSMMSG00000006647) #13	ENSMMSG00000006603 #14	ENSMMSG00000005075 #14	SYT11 (ENSMMSG00000004948) #15	RIT1 (ENSMMSG00000004820) #16	KHDC4 (ENSMMSG00000022609) #17	RXFP4 (ENSMMSG00000022594)	ARHGEF2 (ENSMMSG00000022532) #18	SSR2 (ENSMMSG00000022486) #19	UBQLN4 (ENSMMSG00000022457) #21	LAMTOR2 (ENSMMSG00000022447) #22	RAB25 (ENSMMSG00000022435) #23	MEX3A (ENSMMSG00000022428) #24	LMNA (ENSMMSG00000022290) #25	ENSMMSG00000022232	SEMA4A (ENSMMSG00000022204) #26	SLC25A44 (ENSMMSG00000022189) #27	PMF1 (ENSMMSG00000022165) #28	BGLAP (ENSMMSG00000022141) #29	PAQR6 (ENSMMSG00000022081) #30	SMG5 (ENSMMSG00000022024) #31	TMEM79 (ENSMMSG00000022007) #32	GLMP (ENSMMSG00000021977) #33	CCT3 (ENSMMSG00000021905) #35	TSACC (ENSMMSG00000021888) #36	RHBG (ENSMMSG00000021854) #37
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.i.a.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.i.a.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Rambouillet Sheep	MODERN SPECIES		ASH1L (ENSOARG00020012553)	ENSOARG00020012690	DAP3 (ENSOARG00020012723) #12	MSTO1 (ENSOARG00020013057) #13	ENSOARG00020013143 #14	ENSOARG00020013192 #14	ENSOARG00020013774 #14	SYT11 (ENSOARG00020013872) #15	RIT1 (ENSOARG00020013942) #16	KHDC4 (ENSOARG00020014119) #17	RXFP4 (ENSOARG00020014277)	ARHGEF2 (ENSOARG00020014346) #18	SSR2 (ENSOARG00020015600) #19	ENSOARG00020015739	UBQLN4 (ENSOARG00020015789) #21	LAMTOR2 (ENSOARG00020015838) #22	RAB25 (ENSOARG00020015913) #23	MEX3A (ENSOARG00020015946) #24	LMNA (ENSOARG00020016018) #25	SEMA4A (ENSOARG00020016412) #26	SLC25A44 (ENSOARG00020016505) #27	PMF1 (ENSOARG00020016596) #28	BGLAP (ENSOARG00020016735) #29	PAQR6 (ENSOARG00020016793) #30	SMG5 (ENSOARG00020016889) #31	TMEM79 (ENSOARG00020017071) #32	GLMP (ENSOARG00020017115) #33	CCT3 (ENSOARG00020017271) #35	TSACC (ENSOARG00020017382) #36	RHBG (ENSOARG00020017414) #37	MEF2D (ENSOARG00020017561)
Goat	MODERN SPECIES	22	FDPS (ENSCHIG00000020170)	RUSC1 (ENSCHIG00000014020)	ASH1L (ENSCHIG00000026354)	DAP3 (ENSCHIG00000017638) #12	MSTO1 (ENSCHIG00000027233) #13	ENSCHIG00000021776 #14	ENSCHIG00000011207 #14	ENSCHIG00000025192 #14	SYT11 (ENSCHIG00000021455) #15	RIT1 (ENSCHIG00000010506) #16	KHDC4 (ENSCHIG00000022965) #17	ENSCHIG00000012796	ARHGEF2 (ENSCHIG00000018812) #18	SSR2 (ENSCHIG00000027199) #19	UBQLN4 (ENSCHIG00000015053) #21	LAMTOR2 (ENSCHIG00000026461) #22	RAB25 (ENSCHIG00000018911) #23	MEX3A (ENSCHIG00000012770) #24	LMNA (ENSCHIG00000022777) #25	SEMA4A (ENSCHIG00000022763) #26	SLC25A44 (ENSCHIG00000011510) #27	ENSCHIG00000025721	BGLAP (ENSCHIG00000025718) #29	PAQR6 (ENSCHIG00000019473) #30	SMG5 (ENSCHIG00000007709) #31	TMEM79 (ENSCHIG00000024223) #32	GLMP (ENSCHIG00000018226) #33	CCT3 (ENSCHIG00000011665) #35	TSACC (ENSCHIG00000008701) #36	RHBG (ENSCHIG00000018535) #37	MEF2D (ENSCHIG00000010363)
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.i.a.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
American bison	MODERN SPECIES	3022	FDPS (ENSBBBG00000014941)	ENSBBBG00000014944	ENSBBBG00000014947	ASH1L (ENSBBBG00000014991)	DAP3 (ENSBBBG00000003747) #12	MSTO1 (ENSBBBG00000015135) #13	ENSBBBG00000015141	ENSBBBG00000007558 #14	SYT11 (ENSBBBG00000003798) #15	RIT1 (ENSBBBG00000015315) #16	KHDC4 (ENSBBBG00000001328) #17	RXFP4 (ENSBBBG00000001313)	ARHGEF2 (ENSBBBG00000001262) #18	SSR2 (ENSBBBG00000003501) #19	UBQLN4 (ENSBBBG00000007559) #21	LAMTOR2 (ENSBBBG00000003825) #22	RAB25 (ENSBBBG00000003829) #23	MEX3A (ENSBBBG00000015363) #24	LMNA (ENSBBBG00000003866) #25	SEMA4A (ENSBBBG00000003444) #26	SLC25A44 (ENSBBBG00000003424) #27	PMF1 (ENSBBBG00000015627) #28	BGLAP (ENSBBBG00000015635) #29	PAQR6 (ENSBBBG00000015650) #30	SMG5 (ENSBBBG00000015667) #31	ENSBBBG00000003912	GLMP (ENSBBBG00000015689) #33	CCT3 (ENSBBBG00000015738) #35	TSACC (ENSBBBG00000015743) #36	RHBG (ENSBBBG00000003929) #37	MEF2D (ENSBBBG00000000772)
Bos	ANCESTRAL SPECIES		ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.i.a.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.i.a.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Cow	MODERN SPECIES	22	HCN3 (ENSBTAG00000017055)	PKLR (ENSBTAG00000017056)	FDPS (ENSBTAG00000003948)	RUSC1 (ENSBTAG00000054061)	ASH1L (ENSBTAG00000003954)	DAP3 (ENSBTAG00000001199) #12	MSTO1 (ENSBTAG00000026613) #13	ENSBTAG00000045596 #14	GON4L (ENSBTAG00000020356) #14	SYT11 (ENSBTAG00000011209) #15	RIT1 (ENSBTAG00000000105) #16	KHDC4 (ENSBTAG00000000108)	ARHGEF2 (ENSBTAG00000000113) #18	SSR2 (ENSBTAG00000001212) #19	UBQLN4 (ENSBTAG00000001548) #21	LAMTOR2 (ENSBTAG00000011754) #22	RAB25 (ENSBTAG00000018914) #23	MEX3A (ENSBTAG00000019158) #24	LMNA (ENSBTAG00000017574) #25	SEMA4A (ENSBTAG00000012228) #26	SLC25A44 (ENSBTAG00000009431) #27	PMF1 (ENSBTAG00000009432)	BGLAP (ENSBTAG00000009433) #29	PAQR6 (ENSBTAG00000009434) #30	SMG5 (ENSBTAG00000009435) #31	TMEM79 (ENSBTAG00000009436) #32	GLMP (ENSBTAG00000006364) #33	CCT3 (ENSBTAG00000006370) #35	TSACC (ENSBTAG00000049722) #36	RHBG (ENSBTAG00000012234) #37	MEF2D (ENSBTAG00000046545)
Hybrid Bos Indicus	MODERN SPECIES	22	HCN3 (ENSBIXG00005011927)	PKLR (ENSBIXG00005012018)	FDPS (ENSBIXG00005012083)	RUSC1 (ENSBIXG00005012185)	ASH1L (ENSBIXG00005012290)	DAP3 (ENSBIXG00005012416) #12	MSTO1 (ENSBIXG00005012454) #13	ENSBIXG00005000325 #14	SYT11 (ENSBIXG00005012585) #15	RIT1 (ENSBIXG00005012630) #16	KHDC4 (ENSBIXG00005012701) #17	ENSBIXG00005012726	ARHGEF2 (ENSBIXG00005012933) #18	SSR2 (ENSBIXG00005013052) #19	UBQLN4 (ENSBIXG00005007481) #21	LAMTOR2 (ENSBIXG00005013118) #22	RAB25 (ENSBIXG00005001504) #23	MEX3A (ENSBIXG00005013155) #24	LMNA (ENSBIXG00005013303) #25	SEMA4A (ENSBIXG00005013357) #26	SLC25A44 (ENSBIXG00005013383) #27	ENSBIXG00005013392	BGLAP (ENSBIXG00005013414) #29	PAQR6 (ENSBIXG00005001616) #30	SMG5 (ENSBIXG00005013497) #31	TMEM79 (ENSBIXG00005013531) #32	GLMP (ENSBIXG00005013569) #33	CCT3 (ENSBIXG00005013620) #35	TSACC (ENSBIXG00005013651) #36	RHBG (ENSBIXG00005013672) #37	MEF2D (ENSBIXG00005013762)
Bos_a	ANCESTRAL SPECIES	27	ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256.i.a.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	1034	HCN3 (ENSBMUG00000013008)	PKLR (ENSBMUG00000013109)	FDPS (ENSBMUG00000013151)	RUSC1 (ENSBMUG00000013186)	ASH1L (ENSBMUG00000013247)	DAP3 (ENSBMUG00000013380) #12	MSTO1 (ENSBMUG00000013423) #13	ENSBMUG00000013609 #14	SYT11 (ENSBMUG00000013663) #15	RIT1 (ENSBMUG00000013671) #16	KHDC4 (ENSBMUG00000013747) #17	ENSBMUG00000013792	ARHGEF2 (ENSBMUG00000013945) #18	SSR2 (ENSBMUG00000014061) #19	UBQLN4 (ENSBMUG00000014079) #21	ENSBMUG00000014101 #22	RAB25 (ENSBMUG00000014113) #23	MEX3A (ENSBMUG00000014139) #24	LMNA (ENSBMUG00000014271) #25	SEMA4A (ENSBMUG00000014414) #26	SLC25A44 (ENSBMUG00000014438) #27	ENSBMUG00000014459	PAQR6 (ENSBMUG00000014479) #30	SMG5 (ENSBMUG00000014498) #31	TMEM79 (ENSBMUG00000014504) #32	GLMP (ENSBMUG00000014534) #33	CCT3 (ENSBMUG00000014597) #35	TSACC (ENSBMUG00000014639) #36	RHBG (ENSBMUG00000014644) #37	MEF2D (ENSBMUG00000014724)	ENSBMUG00000014767
Wild yak	MODERN SPECIES	1612																ENSBMUG00000007140 #22
Domestic yak	MODERN SPECIES	22	ASH1L (ENSBGRG00000020526)	ENSBGRG00000020578	ENSBGRG00000020608 #12	MSTO1 (ENSBGRG00000020857) #13	ENSBGRG00000021040 #14	ENSBGRG00000021483	ENSBGRG00000021494 #14	SYT11 (ENSBGRG00000021562) #15	RIT1 (ENSBGRG00000021581) #16	KHDC4 (ENSBGRG00000021657) #17	ENSBGRG00000021933	ARHGEF2 (ENSBGRG00000022001) #18	SSR2 (ENSBGRG00000022293) #19	ENSBGRG00000022398	UBQLN4 (ENSBGRG00000022445) #21	ENSBGRG00000022629 #22	RAB25 (ENSBGRG00000022700) #23	MEX3A (ENSBGRG00000022736) #24	LMNA (ENSBGRG00000022777) #25	SEMA4A (ENSBGRG00000023018) #26	SLC25A44 (ENSBGRG00000023097) #27	ENSBGRG00000023141	BGLAP (ENSBGRG00000023200) #29	PAQR6 (ENSBGRG00000023244) #30	SMG5 (ENSBGRG00000023383) #31	ENSBGRG00000023682	GLMP (ENSBGRG00000023724) #33	CCT3 (ENSBGRG00000023849) #35	TSACC (ENSBGRG00000024207) #36	RHBG (ENSBGRG00000024238) #37	ENSBGRG00000024335
Cetacea	ANCESTRAL SPECIES		ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074.k	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524.a.a #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Blue whale	MODERN SPECIES		ENSBMSG00010003104	PKLR (ENSBMSG00010003143)	ENSBMSG00010003229	RUSC1 (ENSBMSG00010003260)	ASH1L (ENSBMSG00010003357)	DAP3 (ENSBMSG00010003437) #12	MSTO1 (ENSBMSG00010003477) #13	ENSBMSG00010003566 #14	ENSBMSG00010004110	SYT11 (ENSBMSG00010004119) #15	RIT1 (ENSBMSG00010004147) #16	KHDC4 (ENSBMSG00010004174) #17	ARHGEF2 (ENSBMSG00010004265) #18	SSR2 (ENSBMSG00010004540) #19	UBQLN4 (ENSBMSG00010004574) #21	LAMTOR2 (ENSBMSG00010004612) #22	RAB25 (ENSBMSG00010004624) #23	MEX3A (ENSBMSG00010004637) #24	LMNA (ENSBMSG00010004668) #25	SEMA4A (ENSBMSG00010004700) #26	SLC25A44 (ENSBMSG00010004726) #27	ENSBMSG00010004738	BGLAP (ENSBMSG00010004757) #29	SMG5 (ENSBMSG00010004787) #31	TMEM79 (ENSBMSG00010004850) #32	GLMP (ENSBMSG00010004864) #33	CCT3 (ENSBMSG00010004881) #35	RHBG (ENSBMSG00010004893) #37	MEF2D (ENSBMSG00010004921)	ENSBMSG00010004948	ENSBMSG00010005020
Odontoceti	DUPLICATION
Odontoceti	DUPLICATION
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074.k	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100.g.a #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524.a.a #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074.k	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100.g.a #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524.a.a.a #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074.k	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100.g.a #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524.a.a.a #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000154947	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074.k	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100.g.a #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524.a.a.a #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Narwhal	MODERN SPECIES	304	CLK2 (ENSMMNG00015012695)	HCN3 (ENSMMNG00015012673)	PKLR (ENSMMNG00015012630)	ENSMMNG00015012598	RUSC1 (ENSMMNG00015012570)	ASH1L (ENSMMNG00015012492)	DAP3 (ENSMMNG00015012383) #12	MSTO1 (ENSMMNG00015012309) #13	ENSMMNG00015012250 #14	SYT11 (ENSMMNG00015012196) #15	RIT1 (ENSMMNG00015012172) #16	KHDC4 (ENSMMNG00015012142) #17	ARHGEF2 (ENSMMNG00015012060) #18	SSR2 (ENSMMNG00015012014) #19	UBQLN4 (ENSMMNG00015011968) #21	ENSMMNG00015011942 #22	RAB25 (ENSMMNG00015011919) #23	MEX3A (ENSMMNG00015011903) #24	LMNA (ENSMMNG00015011841) #25	SEMA4A (ENSMMNG00015011785) #26	SLC25A44 (ENSMMNG00015011755) #27	ENSMMNG00015011739	BGLAP (ENSMMNG00015011726) #29	ENSMMNG00015011675 #30	SMG5 (ENSMMNG00015011588) #31	TMEM79 (ENSMMNG00015011552) #32	GLMP (ENSMMNG00015011520) #33	CCT3 (ENSMMNG00015011489) #35	ENSMMNG00015011474 #36	RHBG (ENSMMNG00015011460) #37	MEF2D (ENSMMNG00015011394)
Vaquita	MODERN SPECIES		CLK2 (ENSPSNG00000000440)	HCN3 (ENSPSNG00000000564)	PKLR (ENSPSNG00000000611)	ENSPSNG00000000654	RUSC1 (ENSPSNG00000000714)	ASH1L (ENSPSNG00000000798)	DAP3 (ENSPSNG00000000898) #12	MSTO1 (ENSPSNG00000000978) #13	ENSPSNG00000001061 #14	SYT11 (ENSPSNG00000001267) #15	RIT1 (ENSPSNG00000001303) #16	KHDC4 (ENSPSNG00000001328) #17	ARHGEF2 (ENSPSNG00000001483) #18	SSR2 (ENSPSNG00000001665) #19	UBQLN4 (ENSPSNG00000001709) #21	ENSPSNG00000001753 #22	RAB25 (ENSPSNG00000001780) #23	MEX3A (ENSPSNG00000001802) #24	LMNA (ENSPSNG00000001902) #25	SEMA4A (ENSPSNG00000001991) #26	SLC25A44 (ENSPSNG00000002061) #27	ENSPSNG00000002083	BGLAP (ENSPSNG00000002109) #29	PAQR6 (ENSPSNG00000002135) #30	SMG5 (ENSPSNG00000002185) #31	TMEM79 (ENSPSNG00000002228) #32	GLMP (ENSPSNG00000002245) #33	CCT3 (ENSPSNG00000002288) #35	ENSPSNG00000002309 #36	RHBG (ENSPSNG00000002332) #37	MEF2D (ENSPSNG00000002434)
Sperm whale	MODERN SPECIES	15	SHE (ENSPCTG00005012880)	TDRD10 (ENSPCTG00005012748)	EFNA3 (ENSPCTG00005012694)	PBXIP1 (ENSPCTG00005012606)	SHC1 (ENSPCTG00005012451)	ADAR (ENSPCTG00005012266)	KCNN3 (ENSPCTG00005012225)	ASH1L (ENSPCTG00005012095)	DAP3 (ENSPCTG00005011863) #12	MSTO1 (ENSPCTG00005011784) #13	GON4L (ENSPCTG00005011256) #14	SYT11 (ENSPCTG00005011179) #15	RIT1 (ENSPCTG00005011092) #16	SSR2 (ENSPCTG00005010954) #19	UBQLN4 (ENSPCTG00005010892) #21	LAMTOR2 (ENSPCTG00005010831) #22	RAB25 (ENSPCTG00005010780) #23	SMG5 (ENSPCTG00005010741) #31	PAQR6 (ENSPCTG00005010635) #30	BGLAP (ENSPCTG00005010569) #29	PMF1 (ENSPCTG00005010461)	SLC25A44 (ENSPCTG00005010382) #27	ENSPCTG00005010364	ENSPCTG00005010348	ENSPCTG00005010331	SEMA4A (ENSPCTG00005010191) #26	ENSPCTG00005010076 #35	ENSPCTG00005010033 #36	NAXE (ENSPCTG00005009979)	TTC24 (ENSPCTG00005009800)	ENSPCTG00005009657
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00940000161719	ENSGT00940000163237	ENSGT01050000244841.A.a.a	ENSGT00940000158826	ENSGT00530000063841.a	ENSGT00390000016737	ENSGT00940000156266	ENSGT01050000244891.A.d.a.a	ENSGT00950000182886.a.b	ENSGT00940000155527	ENSGT00530000063555.A.a.a	ENSGT00950000183004.a.b.a.a.c.b	ENSGT00950000183132.C	ENSGT00390000001695	ENSGT00940000155341.g.b	ENSGT00390000006100.g.b #22	ENSGT00940000163344.b	ENSGT00940000155341.g.a.a.b	ENSGT00530000064285.j	ENSGT00390000017143	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264.d	ENSGT00390000010172	ENSGT00390000003428	ENSGT00940000164461	ENSGT00440000033811	ENSGT00940000161471	ENSGT00440000038159.qb	ENSGT00940000159453	ENSGT00940000158640
Odontoceti_a	ANCESTRAL SPECIES	23	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826	ENSGT00390000016737	ENSGT00940000156266	ENSGT01050000244891.A.d.a.a	ENSGT00950000182886.a.b	ENSGT00950000185997	ENSGT00940000155527	ENSGT00530000063555.A.a.a	ENSGT00950000183004.a.b.a.a.c.b	ENSGT00950000183132.C	ENSGT00390000001695	ENSGT00940000155341.g.b	ENSGT00390000006100.g.b #22	ENSGT00940000163344.b	ENSGT00940000155341.g.a.a.b	ENSGT00530000064285.j	ENSGT00390000017143	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264.d	ENSGT00390000010172	ENSGT00390000003428	ENSGT00940000164461	ENSGT00440000033811	ENSGT00940000161471	ENSGT00440000038159.qb	ENSGT00940000159453	ENSGT00940000158640
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826	ENSGT00390000016737	ENSGT00940000153147.m.a.a.a.b.a.a.gb	ENSGT00940000156266	ENSGT01050000244891.A.d.a.a	ENSGT00950000182886.a.b	ENSGT00950000185997	ENSGT00940000155527	ENSGT00530000063555.A.a.a	ENSGT00950000183004.a.b.a.a.c.b	ENSGT00950000183132.C	ENSGT00390000001695	ENSGT00940000155341.g.b	ENSGT00390000006100.g.b #22	ENSGT00940000163344.b	ENSGT00940000155341.g.a.a.b	ENSGT00530000064285.j	ENSGT00390000017143	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264.d	ENSGT00390000010172	ENSGT00390000003428	ENSGT00940000164461	ENSGT00440000033811	ENSGT00940000161471	ENSGT00440000038159.qb	ENSGT00940000159453	ENSGT00940000158640
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826	ENSGT00390000016737	ENSGT00940000153147.m.a.a.a.b.a.a.gb	ENSGT00940000156266	ENSGT01050000244891.A.d.a.a	ENSGT00950000182886.a.b	ENSGT00950000185997.a	ENSGT00940000155527	ENSGT00530000063555.A.a.a	ENSGT00950000183004.a.b.a.a.c.b	ENSGT00950000183132.C	ENSGT00390000001695	ENSGT00940000155341.g.b	ENSGT00390000006100.g.b #22	ENSGT00940000163344.b	ENSGT00940000155341.g.a.a.b	ENSGT00530000064285.j	ENSGT00390000017143	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264.d	ENSGT00390000010172	ENSGT00390000003428	ENSGT00940000164461	ENSGT00440000033811	ENSGT00940000161471	ENSGT00440000038159.qb	ENSGT00940000159453	ENSGT00940000158640
Narwhal	MODERN SPECIES	307	CENPC (ENSMMNG00015010752)	ENSMMNG00015010802	EPHA5 (ENSMMNG00015010909)	ENSMMNG00015011106	TECRL (ENSMMNG00015011127)	ENSMMNG00015011164	ENSMMNG00015011177	ADGRL3 (ENSMMNG00015011387)	IGFBP7 (ENSMMNG00015011877)	ENSMMNG00015011894	POLR2B (ENSMMNG00015011928)	ENSMMNG00015011995	NOA1 (ENSMMNG00015012010)	ENSMMNG00015012028	ENSMMNG00015012040	ENSMMNG00015012049 #22	ENSMMNG00015012062	ENSMMNG00015012122	HOPX (ENSMMNG00015012141)	THEGL (ENSMMNG00015012165)	ENSMMNG00015012180	ENSMMNG00015012186	SRP72 (ENSMMNG00015012225)	PAICS (ENSMMNG00015012325)	PPAT (ENSMMNG00015012362)	ENSMMNG00015012406	AASDH (ENSMMNG00015012429)	CRACD (ENSMMNG00015012549)	ENSMMNG00015012615	CEP135 (ENSMMNG00015012654)	EXOC1 (ENSMMNG00015012800)
Beluga whale	MODERN SPECIES	77	CENPC (ENSDLEG00000013357)	ENSDLEG00000013392	EPHA5 (ENSDLEG00000013414)	RPL15 (ENSDLEG00000013495)	ENSDLEG00000013502	TECRL (ENSDLEG00000013514)	ENSDLEG00000013581	ENSDLEG00000013592	ADGRL3 (ENSDLEG00000013614)	ENSDLEG00000013727	IGFBP7 (ENSDLEG00000013741)	ENSDLEG00000013747	POLR2B (ENSDLEG00000013785)	NOA1 (ENSDLEG00000013832)	ENSDLEG00000013849	LAMTOR2 (ENSDLEG00000013858) #22	ENSDLEG00000013873	ENSDLEG00000013880	ENSDLEG00000013894	HOPX (ENSDLEG00000013911)	THEGL (ENSDLEG00000013936)	ARL9 (ENSDLEG00000014007)	SRP72 (ENSDLEG00000014021)	ENSDLEG00000014072	ENSDLEG00000014169	AASDH (ENSDLEG00000014259)	KIAA1211 (ENSDLEG00000014302)	CEP135 (ENSDLEG00000014370)	EXOC1 (ENSDLEG00000014416)	EXOC1L (ENSDLEG00000014446)	PDCL2 (ENSDLEG00000014453)
Vaquita	MODERN SPECIES	16	TMPRSS11D (ENSPSNG00000004003)	GNRHR (ENSPSNG00000003987)	UBA6 (ENSPSNG00000003963)	CENPC (ENSPSNG00000003913)	ENSPSNG00000003896	ENSPSNG00000003889	EPHA5 (ENSPSNG00000003685)	ENSPSNG00000003580	TECRL (ENSPSNG00000003539)	ENSPSNG00000003520	ADGRL3 (ENSPSNG00000002346)	IGFBP7 (ENSPSNG00000001692)	ENSPSNG00000001679	POLR2B (ENSPSNG00000001540)	NOA1 (ENSPSNG00000001492)	ENSPSNG00000001480 #22	ENSPSNG00000001451	ENSPSNG00000001425	ENSPSNG00000001402	HOPX (ENSPSNG00000001376)	THEGL (ENSPSNG00000001329)	ARL9 (ENSPSNG00000001309)	SRP72 (ENSPSNG00000001264)	PAICS (ENSPSNG00000001214)	ENSPSNG00000001197	ENSPSNG00000001179	AASDH (ENSPSNG00000001136)	CRACD (ENSPSNG00000000906)	ENSPSNG00000000807	CEP135 (ENSPSNG00000000783)	EXOC1 (ENSPSNG00000000713)
Sperm whale	MODERN SPECIES	18	CENPC (ENSPCTG00005001007)	ENSPCTG00005001061	EPHA5 (ENSPCTG00005001144)	ENSPCTG00005001343	TECRL (ENSPCTG00005001362)	ADGRL3 (ENSPCTG00005001783)	ENSPCTG00005003966	ENSPCTG00005003979	IGFBP7 (ENSPCTG00005003998)	ENSPCTG00005004007	POLR2B (ENSPCTG00005004031)	NOA1 (ENSPCTG00005004123)	ENSPCTG00005004139	ENSPCTG00005004151	ENSPCTG00005004160	ENSPCTG00005004167 #22	ENSPCTG00005004172	ENSPCTG00005004198	ENSPCTG00005004216	HOPX (ENSPCTG00005004233)	THEGL (ENSPCTG00005004247)	ARL9 (ENSPCTG00005004276)	SRP72 (ENSPCTG00005004329)	PAICS (ENSPCTG00005004385)	PPAT (ENSPCTG00005004431)	ENSPCTG00005004475	AASDH (ENSPCTG00005004515)	CRACD (ENSPCTG00005004658)	ENSPCTG00005004860	CEP135 (ENSPCTG00005004883)	EXOC1 (ENSPCTG00005004932)
Odontoceti	ANCESTRAL SPECIES																	ENSGT00390000006100.h #22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000006100.h #22
Dolphin	MODERN SPECIES	1344				FDPS (ENSTTRG00000013326)	RUSC1 (ENSTTRG00000013327)	ASH1L (ENSTTRG00000013329)	DAP3 (ENSTTRG00000013332) #12	ENSTTRG00000013334	ENSTTRG00000013336 #14	SYT11 (ENSTTRG00000013337) #15	RIT1 (ENSTTRG00000013338) #16	KHDC4 (ENSTTRG00000013339) #17	ARHGEF2 (ENSTTRG00000013341) #18	SSR2 (ENSTTRG00000013342) #19	UBQLN4 (ENSTTRG00000013343) #21	LAMTOR2 (ENSTTRG00000013344) #22	RAB25 (ENSTTRG00000013345) #23	MEX3A (ENSTTRG00000013346) #24
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00390000006100.h #22
Monodontidae	ANCESTRAL SPECIES																	ENSGT00390000006100.h #22
Beluga whale	MODERN SPECIES	69	SCAMP3 (ENSDLEG00000015441)	HCN3 (ENSDLEG00000015901)	PKLR (ENSDLEG00000015946)	FDPS (ENSDLEG00000016328)	RUSC1 (ENSDLEG00000016359)	ASH1L (ENSDLEG00000016452)	DAP3 (ENSDLEG00000016565) #12	MSTO1 (ENSDLEG00000017154) #13	ENSDLEG00000017562 #14	SYT11 (ENSDLEG00000017715) #15	RIT1 (ENSDLEG00000017727) #16	KIAA0907 (ENSDLEG00000017767) #17	ARHGEF2 (ENSDLEG00000018134) #18	SSR2 (ENSDLEG00000019690) #19	UBQLN4 (ENSDLEG00000019705) #21	ENSDLEG00000019714 #22	RAB25 (ENSDLEG00000019718) #23	LMNA (ENSDLEG00000019723) #25	MEX3A (ENSDLEG00000019727) #24	SEMA4A (ENSDLEG00000019729) #26	SLC25A44 (ENSDLEG00000019739) #27	ENSDLEG00000019747	BGLAP (ENSDLEG00000019752) #29	PAQR6 (ENSDLEG00000019756) #30	SMG5 (ENSDLEG00000019769) #31	TMEM79 (ENSDLEG00000019854) #32	GLMP (ENSDLEG00000019860) #33	CCT3 (ENSDLEG00000019863) #35	ENSDLEG00000019867 #36	RHBG (ENSDLEG00000019871) #37	MEF2D (ENSDLEG00000019879)
Atlantogenata	ANCESTRAL SPECIES	15	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Afrotheria	ANCESTRAL SPECIES	36	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Tenrec	MODERN SPECIES	5184															ENSETEG00000005543 #21	LAMTOR2 (ENSETEG00000005546) #22	ENSETEG00000005548 #23
Afrotheria_a	ANCESTRAL SPECIES	37	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00530000064067 #13	ENSGT00390000016256 #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Elephant	MODERN SPECIES	325	HCN3 (ENSLAFG00000003265)	PKLR (ENSLAFG00000003270)	RUSC1 (ENSLAFG00000029910)	ASH1L (ENSLAFG00000002197)	DAP3 (ENSLAFG00000005200) #12	MSTO1 (ENSLAFG00000006224) #13	ENSLAFG00000005205 #14	SYT11 (ENSLAFG00000030067) #15	RIT1 (ENSLAFG00000014967) #16	KHDC4 (ENSLAFG00000014971) #17	RXFP4 (ENSLAFG00000011205)	ARHGEF2 (ENSLAFG00000011210) #18	SLC25A44 (ENSLAFG00000022753) #27	SSR2 (ENSLAFG00000011219) #19	UBQLN4 (ENSLAFG00000011221) #21	LAMTOR2 (ENSLAFG00000029041) #22	RAB25 (ENSLAFG00000009222) #23	MEX3A (ENSLAFG00000009220) #24	LMNA (ENSLAFG00000002832) #25	SEMA4A (ENSLAFG00000002834) #26	PMF1 (ENSLAFG00000025558) #28	BGLAP (ENSLAFG00000016824) #29	PAQR6 (ENSLAFG00000026867) #30	SMG5 (ENSLAFG00000006241) #31	TMEM79 (ENSLAFG00000027928) #32	GLMP (ENSLAFG00000005387) #33	CCT3 (ENSLAFG00000005391) #35	TSACC (ENSLAFG00000005393) #36	RHBG (ENSLAFG00000005397) #37	MEF2D (ENSLAFG00000015564)	IQGAP3 (ENSLAFG00000003433)
Hyrax	MODERN SPECIES	4408															ENSPCAG00000014497 #21	LAMTOR2 (ENSPCAG00000014566) #22	RAB25 (ENSPCAG00000014579) #23
Xenarthra	ANCESTRAL SPECIES	37														ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000164230	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Armadillo	MODERN SPECIES	1939														SSR2 (ENSDNOG00000017062) #19	ENSDNOG00000017067 #21	LAMTOR2 (ENSDNOG00000017068) #22	RAB25 (ENSDNOG00000039155) #23	ENSDNOG00000037981 #24	LMNA (ENSDNOG00000010869) #25	ENSDNOG00000035727 #26
Sloth	MODERN SPECIES	1546																LAMTOR2 (ENSCHOG00000012908) #22	ENSCHOG00000012921 #23
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00390000016256.b #14	ENSGT00530000064067 #13	ENSGT00390000016256.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Opossum	MODERN SPECIES	1	HCN3 (ENSMODG00000017060)	PKLR (ENSMODG00000017053)	ENSMODG00000042246	RUSC1 (ENSMODG00000017044)	ASH1L (ENSMODG00000017033)	DAP3 (ENSMODG00000017024) #12	ENSMODG00000025668 #14	MSTO1 (ENSMODG00000017015) #13	ENSMODG00000017006 #14	SYT11 (ENSMODG00000016994) #15	RIT1 (ENSMODG00000016989) #16	KHDC4 (ENSMODG00000016981) #17	ARHGEF2 (ENSMODG00000016970) #18	SSR2 (ENSMODG00000016964) #19	UBQLN4 (ENSMODG00000016961) #21	LAMTOR2 (ENSMODG00000016959) #22	RAB25 (ENSMODG00000048622) #23	MEX3A (ENSMODG00000016954) #24	LMNA (ENSMODG00000016946) #25	SEMA4A (ENSMODG00000016928) #26	SLC25A44 (ENSMODG00000016921) #27	PMF1 (ENSMODG00000016918) #28	ENSMODG00000016914 #29	PAQR6 (ENSMODG00000016910) #30	SMG5 (ENSMODG00000016901) #31	TMEM79 (ENSMODG00000016892) #32	GLMP (ENSMODG00000016888) #33	CCT3 (ENSMODG00000016883) #35	TSACC (ENSMODG00000016872) #36	RHBG (ENSMODG00000016867) #37	MEF2D (ENSMODG00000016861)
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00390000016256.b #14	ENSGT00530000064067 #13	ENSGT00390000016256.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Diprotodontia	ANCESTRAL SPECIES	30	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00390000016256.b #14	ENSGT00530000064067 #13	ENSGT00390000016256.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
Diprotodontia_a	ANCESTRAL SPECIES	28	ENSGT00940000162023	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00390000016256.b #14	ENSGT00530000064067 #13	ENSGT00390000016256.a #14	ENSGT00940000159088 #15	ENSGT00940000160132 #16	ENSGT00510000047412.a #17	ENSGT00940000158341 #18	ENSGT00390000005125 #19	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290 #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000012524 #36	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463
koala	MODERN SPECIES	42	FDPS (ENSPCIG00000021697)	RUSC1 (ENSPCIG00000021696)	ASH1L (ENSPCIG00000021694)	DAP3 (ENSPCIG00000021692) #12	ENSPCIG00000021691 #14	ENSPCIG00000035411	MSTO1 (ENSPCIG00000021688) #13	ENSPCIG00000019134 #14	ENSPCIG00000031923 #14	SYT11 (ENSPCIG00000036428) #15	RIT1 (ENSPCIG00000019094) #16	KHDC4 (ENSPCIG00000019084) #17	ARHGEF2 (ENSPCIG00000019069) #18	SSR2 (ENSPCIG00000019065) #19	UBQLN4 (ENSPCIG00000018959) #21	LAMTOR2 (ENSPCIG00000018952) #22	RAB25 (ENSPCIG00000018951) #23	MEX3A (ENSPCIG00000018950) #24	LMNA (ENSPCIG00000018949) #25	SEMA4A (ENSPCIG00000018948) #26	SLC25A44 (ENSPCIG00000018947) #27	PMF1 (ENSPCIG00000018946) #28	PAQR6 (ENSPCIG00000018944) #30	SMG5 (ENSPCIG00000018938) #31	TMEM79 (ENSPCIG00000018937) #32	GLMP (ENSPCIG00000018935) #33	CCT3 (ENSPCIG00000018933) #35	TSACC (ENSPCIG00000018932) #36	RHBG (ENSPCIG00000018705) #37	MEF2D (ENSPCIG00000024228)	IQGAP3 (ENSPCIG00000024229)
Common wonbat	MODERN SPECIES	1035	FDPS (ENSVURG00010015053)	RUSC1 (ENSVURG00010015034)	ASH1L (ENSVURG00010014983)	ENSVURG00010014964 #12	ENSVURG00010014951 #14	ENSVURG00010014937	MSTO1 (ENSVURG00010014920) #13	ENSVURG00010014888 #14	SYT11 (ENSVURG00010014876) #15	RIT1 (ENSVURG00010014864) #16	KHDC4 (ENSVURG00010014857) #17	ENSVURG00010014832	ARHGEF2 (ENSVURG00010014790) #18	SSR2 (ENSVURG00010014748) #19	UBQLN4 (ENSVURG00010014662) #21	LAMTOR2 (ENSVURG00010014640) #22	RAB25 (ENSVURG00010014628) #23	MEX3A (ENSVURG00010014622) #24	LMNA (ENSVURG00010014586) #25	SEMA4A (ENSVURG00010014559) #26	SLC25A44 (ENSVURG00010014546) #27	PMF1 (ENSVURG00010014537) #28	BGLAP (ENSVURG00010014520) #29	PAQR6 (ENSVURG00010014505) #30	SMG5 (ENSVURG00010014439) #31	TMEM79 (ENSVURG00010014422) #32	GLMP (ENSVURG00010014413) #33	CCT3 (ENSVURG00010014395) #35	ENSVURG00010014387 #36	RHBG (ENSVURG00010014362) #37	MEF2D (ENSVURG00010014293)
Wallaby	MODERN SPECIES	6522															UBQLN4 (ENSMEUG00000016573) #21	LAMTOR2 (ENSMEUG00000016588) #22	RAB25 (ENSMEUG00000016598) #23
Tasmanian devil	MODERN SPECIES	3	PKLR (ENSSHAG00000008590)	FDPS (ENSSHAG00000009077)	RUSC1 (ENSSHAG00000026915)	ASH1L (ENSSHAG00000009472)	ENSSHAG00000028324 #12	ENSSHAG00000011327 #14	ENSSHAG00000030016	ENSSHAG00000011742 #13	ENSSHAG00000011779 #14	ENSSHAG00000012239 #15	RIT1 (ENSSHAG00000012524) #16	KHDC4 (ENSSHAG00000012665) #17	ARHGEF2 (ENSSHAG00000020979) #18	ENSSHAG00000012964 #19	UBQLN4 (ENSSHAG00000013254) #21	LAMTOR2 (ENSSHAG00000013314) #22	RAB25 (ENSSHAG00000013327) #23	MEX3A (ENSSHAG00000032241) #24	LMNA (ENSSHAG00000013712) #25	SEMA4A (ENSSHAG00000013803) #26	SLC25A44 (ENSSHAG00000023169) #27	PMF1 (ENSSHAG00000013991) #28	BGLAP (ENSSHAG00000022571) #29	PAQR6 (ENSSHAG00000014101) #30	SMG5 (ENSSHAG00000014163) #31	TMEM79 (ENSSHAG00000014298) #32	ENSSHAG00000014320 #33	CCT3 (ENSSHAG00000014346) #35	TSACC (ENSSHAG00000024448) #36	RHBG (ENSSHAG00000014508) #37	MEF2D (ENSSHAG00000014927)
Platypus	MODERN SPECIES	88	ENSOANG00000038919	ENTREP3 (ENSOANG00000038845)	SCAMP3 (ENSOANG00000037835)	CLK2 (ENSOANG00000049819)	PKLR (ENSOANG00000044012)	FDPS (ENSOANG00000051014)	ENSOANG00000043091	DAP3 (ENSOANG00000031925) #12	ENSOANG00000042137	ENSOANG00000049330 #14	SYT11 (ENSOANG00000042253) #15	KHDC4 (ENSOANG00000031515) #17	ARHGEF2 (ENSOANG00000047409) #18	SSR2 (ENSOANG00000041072) #19	UBQLN4 (ENSOANG00000040199) #21	ENSOANG00000039502 #22	RAB25 (ENSOANG00000036213) #23	MEX3A (ENSOANG00000039670) #24	ENSOANG00000048604	ENSOANG00000041083	LMNA (ENSOANG00000012813) #25	SEMA4A (ENSOANG00000009659) #26	SLC25A44 (ENSOANG00000043363) #27	ENSOANG00000050835 #28	ENSOANG00000036654	SMG5 (ENSOANG00000048288) #31	GLMP (ENSOANG00000031128) #33	CCT3 (ENSOANG00000003511) #35	ENSOANG00000046848	MEF2D (ENSOANG00000049864)	RHBG (ENSOANG00000044068) #37
Sauria	ANCESTRAL SPECIES	28	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19	ENSGT00940000158341 #18
Lepidosauria	ANCESTRAL SPECIES	36								ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19	ENSGT00940000158341 #18	ENSGT01030000234534.B.a.a.b
tuatara	MODERN SPECIES	1930								ENSSPUG00000004101	ENSSPUG00000004095	RHBG (ENSSPUG00000003411) #37	MEF2D (ENSSPUG00000003141)	IQGAP3 (ENSSPUG00000002736)	NAXE (ENSSPUG00000002689)	GPATCH4 (ENSSPUG00000002674)	UBQLN4 (ENSSPUG00000002649) #21	LAMTOR2 (ENSSPUG00000002639) #22	RAB25 (ENSSPUG00000002555) #23	ENSSPUG00000002526	MEX3A (ENSSPUG00000002522) #24	LMNA (ENSSPUG00000002510) #25	SEMA4A (ENSSPUG00000002416) #26	SLC25A44 (ENSSPUG00000002391) #27	PMF1 (ENSSPUG00000002356) #28	PAQR6 (ENSSPUG00000002286) #30	SMG5 (ENSSPUG00000002260) #31	TMEM79 (ENSSPUG00000002207) #32	GLMP (ENSSPUG00000002191) #33	CCT3 (ENSSPUG00000002180) #35	SSR2 (ENSSPUG00000002144) #19	ARHGEF2 (ENSSPUG00000002103) #18	ENSSPUG00000002083
Episquamata	ANCESTRAL SPECIES	33					ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00940000167298	ENSGT00410000026290.i #29
Toxicofera	ANCESTRAL SPECIES	61									ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451
Elapidae	ANCESTRAL SPECIES	41						ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343.c.b	ENSGT00940000157343.c.a	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00960000192439.a	ENSGT01020000230359.A	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451.s	ENSGT00510000048151
Indian cobra	MODERN SPECIES	17	ATG2A (ENSNNAG00000018767)	SCYL1 (ENSNNAG00000018772)	ENSNNAG00000018776	PC (ENSNNAG00000018779)	ENSNNAG00000018800	ENSNNAG00000018802	ENSNNAG00000018804	RHBG (ENSNNAG00000018811) #37	ENSNNAG00000018829	ENSNNAG00000018839	HAPLN2 (ENSNNAG00000018844)	MEF2D (ENSNNAG00000018857)	IQGAP3 (ENSNNAG00000018874)	NAXE (ENSNNAG00000018884)	UBQLN4 (ENSNNAG00000018894) #21	LAMTOR2 (ENSNNAG00000018899) #22	RAB25 (ENSNNAG00000018902) #23	ENSNNAG00000018907	ENSNNAG00000018909	MEX3A (ENSNNAG00000018913) #24	LMNA (ENSNNAG00000018915) #25	SEMA4A (ENSNNAG00000018920) #26	SLC25A44 (ENSNNAG00000018928) #27	BGLAP (ENSNNAG00000018931) #29	ENSNNAG00000018936	ENSNNAG00000018941	ENSNNAG00000018945	ENSNNAG00000018946	CX3CR1 (ENSNNAG00000018948)	ENSNNAG00000018951	ENSNNAG00000018956
Elapidae_a	ANCESTRAL SPECIES	94						ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343.c.b	ENSGT00940000157343.c.a	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00960000192439.a	ENSGT01020000230359.A	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451.s	ENSGT00510000048151	ENSGT00640000091486.a	ENSGT00390000018613.b	ENSGT00940000164681
Acanthophiinae	ANCESTRAL SPECIES	81						ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343.c.b	ENSGT00940000157343.c.a	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000163126	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00960000192439.a	ENSGT01020000230359.A	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451.s	ENSGT00510000048151	ENSGT00640000091486.a	ENSGT00390000018613.b
Mainland tiger snake	MODERN SPECIES	265	PPP2R5B (ENSNSUG00000000357)	ENSNSUG00000002041	ATG2A (ENSNSUG00000002057)	ENSNSUG00000002120	PC (ENSNSUG00000002123)	ENSNSUG00000002208	ENSNSUG00000002213	ENSNSUG00000002214	HAPLN2 (ENSNSUG00000002218)	RHBG (ENSNSUG00000002224) #37	MEF2D (ENSNSUG00000002226)	ENSNSUG00000002233	ENSNSUG00000002240	NAXE (ENSNSUG00000002248)	UBQLN4 (ENSNSUG00000002251) #21	LAMTOR2 (ENSNSUG00000002262) #22	ENSNSUG00000002265	MEX3A (ENSNSUG00000002275) #24
Eastern brown snake	MODERN SPECIES	96	ENSPTXG00000016505	GPHA2 (ENSPTXG00000016503)	PPP2R5B (ENSPTXG00000016501)	ENSPTXG00000016498	ATG2A (ENSPTXG00000016494)	ENSPTXG00000016490	ENSPTXG00000016488	PC (ENSPTXG00000016469)	ENSPTXG00000016468	ENSPTXG00000016467	HAPLN2 (ENSPTXG00000016465)	RHBG (ENSPTXG00000016463) #37	MEF2D (ENSPTXG00000016452)	IQGAP3 (ENSPTXG00000016444)	UBQLN4 (ENSPTXG00000016442) #21	LAMTOR2 (ENSPTXG00000016441) #22	RAB25 (ENSPTXG00000016440) #23	ENSPTXG00000016439	ENSPTXG00000016437	MEX3A (ENSPTXG00000016434) #24	LMNA (ENSPTXG00000016432) #25	ENSPTXG00000016426	ENSPTXG00000016424	ENSPTXG00000016422	ENSPTXG00000016419	CX3CR1 (ENSPTXG00000016417)	VANGL2 (ENSPTXG00000016413)	ENSPTXG00000016411	NHLH1 (ENSPTXG00000016409)	NCSTN (ENSPTXG00000016406)	COPA (ENSPTXG00000015419)
Blue-lipped sea krait	MODERN SPECIES	2466													IQGAP3 (ENSLLTG00000001258)	NAXE (ENSLLTG00000006407)	UBQLN4 (ENSLLTG00000006421) #21	LAMTOR2 (ENSLLTG00000006447) #22	RAB25 (ENSLLTG00000006465) #23	ENSLLTG00000006480	MEX3A (ENSLLTG00000006498) #24
Laterata	ANCESTRAL SPECIES	79															ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00940000167298	ENSGT00410000026290.i #29
Common wall lizard	MODERN SPECIES	7	IQGAP3 (ENSPMRG00000017460)	TTC24 (ENSPMRG00000017485)	ENSPMRG00000017492	ENSPMRG00000017496	GPATCH4 (ENSPMRG00000017498)	NAXE (ENSPMRG00000017502)	ENSPMRG00000017504	ENSPMRG00000017511	ENSPMRG00000017521	ENSPMRG00000017525	ENSPMRG00000017535	ENSPMRG00000017541	ENSPMRG00000017551	ENSPMRG00000017565	UBQLN4 (ENSPMRG00000017572) #21	LAMTOR2 (ENSPMRG00000017582) #22	RAB25 (ENSPMRG00000017595) #23	ENSPMRG00000017624	ENSPMRG00000017630	MEX3A (ENSPMRG00000017636) #24	LMNA (ENSPMRG00000017646) #25	ENSPMRG00000017660 #26	ENSPMRG00000017669 #26	ENSPMRG00000017683 #26	SLC25A44 (ENSPMRG00000017691) #27	PMF1 (ENSPMRG00000017696) #28	ENSPMRG00000017700	ENSPMRG00000017706	VANGL2 (ENSPMRG00000017711)	ENSPMRG00000017721	NHLH1 (ENSPMRG00000017730)
Argentine black and white tegu	MODERN SPECIES	150			CCT3 (ENSSMRG00000015855) #35	ENSSMRG00000015856 #33	LGALS12 (ENSSMRG00000015858)	PC (ENSSMRG00000015860)	ENSSMRG00000015861	BCAN (ENSSMRG00000015863)	HAPLN2 (ENSSMRG00000015864)	GPATCH4 (ENSSMRG00000015866)	NAXE (ENSSMRG00000015867)	ENSSMRG00000015868	IQGAP3 (ENSSMRG00000015869)	MEF2D (ENSSMRG00000017410)	UBQLN4 (ENSSMRG00000017524) #21	LAMTOR2 (ENSSMRG00000017526) #22	RAB25 (ENSSMRG00000017527) #23	ENSSMRG00000017528	MEX3A (ENSSMRG00000017529) #24	LMNA (ENSSMRG00000017530) #25	SEMA4A (ENSSMRG00000017533) #26	SLC25A44 (ENSSMRG00000017536) #27	ENSSMRG00000017539	ENSSMRG00000017540 #29	VANGL2 (ENSSMRG00000017543)	ENSSMRG00000017546	NHLH1 (ENSSMRG00000017548)	NCSTN (ENSSMRG00000017550)	COPA (ENSSMRG00000017553)
Archelosauria	ANCESTRAL SPECIES	27	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19	ENSGT00940000158341 #18
Cryptodira	ANCESTRAL SPECIES	20	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19	ENSGT00940000158341 #18
Testudinoidea	ANCESTRAL SPECIES	17	ENSGT00940000157485	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765.n	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131.a #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19	ENSGT00940000158341 #18
Emydidae	ANCESTRAL SPECIES	18	ENSGT00940000157485	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765.n	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244.h.b #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131.a #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19	ENSGT00940000158341 #18
Three-toed box turtle	MODERN SPECIES	102	SH2D2A (ENSTMTG00000020518)	PRCC (ENSTMTG00000020541)	HDGF (ENSTMTG00000020549)	MRPL24 (ENSTMTG00000020554)	METTL25B (ENSTMTG00000020559)	ISG20L2 (ENSTMTG00000020564)	CRABP2 (ENSTMTG00000020566)	ENSTMTG00000020577	ENSTMTG00000020582	BCAN (ENSTMTG00000020597)	HAPLN2 (ENSTMTG00000020622)	RHBG (ENSTMTG00000020629) #37	MEF2D (ENSTMTG00000020638)	IQGAP3 (ENSTMTG00000020666)	UBQLN4 (ENSTMTG00000020912) #21	LAMTOR2 (ENSTMTG00000020971) #22	RAB25 (ENSTMTG00000020976) #23	ENSTMTG00000020981	ENSTMTG00000020985	MEX3A (ENSTMTG00000020991) #24	ENSTMTG00000021000	ENSTMTG00000021004 #26	ENSTMTG00000021008 #26	SLC25A44 (ENSTMTG00000021015) #27	PMF1 (ENSTMTG00000021018) #28	ENSTMTG00000021022	PAQR6 (ENSTMTG00000021023) #30	SMG5 (ENSTMTG00000021032) #31	TMEM79 (ENSTMTG00000021042) #32	GLMP (ENSTMTG00000021048) #33	CCT3 (ENSTMTG00000021053) #35
painted turtle	MODERN SPECIES	785	ENSCPBG00000025702	GBA1 (ENSCPBG00000025703)	MTX1 (ENSCPBG00000025708)	THBS3 (ENSCPBG00000025710)	KHDC4 (ENSCPBG00000025715) #17	RIT1 (ENSCPBG00000025719) #16	SYT11 (ENSCPBG00000025720) #15	ENSCPBG00000025730 #14	MSTO1 (ENSCPBG00000025784) #13	DAP3 (ENSCPBG00000025787) #12	ENSCPBG00000025790	IQGAP3 (ENSCPBG00000025794)	NAXE (ENSCPBG00000025800)	GPATCH4 (ENSCPBG00000025803)	UBQLN4 (ENSCPBG00000025810) #21	LAMTOR2 (ENSCPBG00000025814) #22	RAB25 (ENSCPBG00000025817) #23	ENSCPBG00000025819	MEX3A (ENSCPBG00000025821) #24	ENSCPBG00000025823 #25	SEMA4A (ENSCPBG00000025830) #26	SLC25A44 (ENSCPBG00000025837) #27	PMF1 (ENSCPBG00000025840) #28	BGLAP (ENSCPBG00000025842) #29	PAQR6 (ENSCPBG00000025845) #30	SMG5 (ENSCPBG00000025848) #31	TMEM79 (ENSCPBG00000025854) #32	GLMP (ENSCPBG00000025860) #33	CCT3 (ENSCPBG00000025861) #35	SSR2 (ENSCPBG00000025864) #19	ARHGEF2 (ENSCPBG00000025867) #18
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00940000157485	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765.n	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000163126	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00960000189418	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131.a #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19
Abingdon island giant tortoise	MODERN SPECIES	1671	MRPL24 (ENSCABG00000017743)	METTL25B (ENSCABG00000017746)	ISG20L2 (ENSCABG00000017748)	ENSCABG00000017751	ENSCABG00000017754	ENSCABG00000017759	ENSCABG00000017765	HAPLN2 (ENSCABG00000017810)	RHBG (ENSCABG00000017984) #37	MEF2D (ENSCABG00000017991)	IQGAP3 (ENSCABG00000018011)	NAXE (ENSCABG00000018099)	ENSCABG00000018102	ENSCABG00000018117	UBQLN4 (ENSCABG00000018121) #21	LAMTOR2 (ENSCABG00000018126) #22	RAB25 (ENSCABG00000018130) #23	ENSCABG00000018133	ENSCABG00000018135	MEX3A (ENSCABG00000018137) #24	LMNA (ENSCABG00000018140) #25	SEMA4A (ENSCABG00000018143) #26	SLC25A44 (ENSCABG00000018148) #27	PMF1 (ENSCABG00000018150) #28	ENSCABG00000018151 #30	ENSCABG00000018152 #30	SMG5 (ENSCABG00000018154) #31	TMEM79 (ENSCABG00000018156) #32	ENSCABG00000018157 #33	ENSCABG00000018158 #33	CCT3 (ENSCABG00000018159) #35
Goode s thornscrub tortoise	MODERN SPECIES	16	MRPL24 (ENSGEVG00005014131)	METTL25B (ENSGEVG00005014161)	ISG20L2 (ENSGEVG00005014190)	CRABP2 (ENSGEVG00005014210)	ENSGEVG00005014250	ENSGEVG00005014272	ENSGEVG00005014294	BCAN (ENSGEVG00005014368)	HAPLN2 (ENSGEVG00005014721)	RHBG (ENSGEVG00005015040) #37	MEF2D (ENSGEVG00005015371)	IQGAP3 (ENSGEVG00005015449)	NAXE (ENSGEVG00005016400)	GPATCH4 (ENSGEVG00005016428)	UBQLN4 (ENSGEVG00005016451) #21	LAMTOR2 (ENSGEVG00005016481) #22	RAB25 (ENSGEVG00005016498) #23	ENSGEVG00005016590	MEX3A (ENSGEVG00005016649) #24	LMNA (ENSGEVG00005016668) #25	SEMA4A (ENSGEVG00005016697) #26	SLC25A44 (ENSGEVG00005016726) #27	PMF1 (ENSGEVG00005016760) #28	ENSGEVG00005016778	PAQR6 (ENSGEVG00005016803) #30	SMG5 (ENSGEVG00005016873) #31	TMEM79 (ENSGEVG00005016914) #32	GLMP (ENSGEVG00005017028) #33	CCT3 (ENSGEVG00005017052) #35	SSR2 (ENSGEVG00005017086) #19	ARHGEF2 (ENSGEVG00005017131) #18
Archosauria	ANCESTRAL SPECIES	28	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19	ENSGT00510000047412.a #17
Australian saltwater crocodile	MODERN SPECIES	15	MRPL24 (ENSCPRG00005007941)	METTL25B (ENSCPRG00005007936)	ISG20L2 (ENSCPRG00005007934)	CRABP2 (ENSCPRG00005007933)	ENSCPRG00005007931	ENSCPRG00005007929	BCAN (ENSCPRG00005007910)	HAPLN2 (ENSCPRG00005007895)	RHBG (ENSCPRG00005007888) #37	MEF2D (ENSCPRG00005007870)	IQGAP3 (ENSCPRG00005007853)	TTC24 (ENSCPRG00005007848)	NAXE (ENSCPRG00005007843)	GPATCH4 (ENSCPRG00005007835)	UBQLN4 (ENSCPRG00005007826) #21	LAMTOR2 (ENSCPRG00005007823) #22	RAB25 (ENSCPRG00005007819) #23	ENSCPRG00005007809	MEX3A (ENSCPRG00005007807) #24	LMNA (ENSCPRG00005007803) #25	BGLAP (ENSCPRG00005007799) #29	ENSCPRG00005007797	ENSCPRG00005007796 #30	ENSCPRG00005007795 #30	SMG5 (ENSCPRG00005007786) #31	TMEM79 (ENSCPRG00005007775) #32	GLMP (ENSCPRG00005007771) #33
Aves	ANCESTRAL SPECIES	31	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19	ENSGT00510000047412.a #17
Neognathae	ANCESTRAL SPECIES	28	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19
Galloanserae	ANCESTRAL SPECIES	36	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19	ENSGT00940000155176	ENSGT00940000157759
Anatidae	ANCESTRAL SPECIES	81							ENSGT00940000167106	ENSGT00940000157343.g	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00960000189418	ENSGT00940000154566 #31	ENSGT00390000018130.a.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000159348.e
Duck	MODERN SPECIES		ENSAPLG00000011089	ENSAPLG00000010976	PDK3 (ENSAPLG00000010492)	ENSAPLG00000010281	POLA1 (ENSAPLG00000008944)	ENSAPLG00000025069	ENSAPLG00000022772	ENSAPLG00000022122	ENSAPLG00000019671	IL1RAPL1 (ENSAPLG00000003925)	NR0B1 (ENSAPLG00000019472)	TASL (ENSAPLG00000002076)	ENSAPLG00000003111	TAB3 (ENSAPLG00000002911)	ENSAPLG00000016297	LAMTOR2 (ENSAPLG00000001483) #22	ENSAPLG00000007792	ENSAPLG00000022874	ENSAPLG00000023391	TMEM47 (ENSAPLG00000007982)	ENSAPLG00000028806	ENSAPLG00000022017	ENSAPLG00000030900	ENSAPLG00000014415	ENSAPLG00000019280	ENSAPLG00000018874	ENSAPLG00000021983	GET1 (ENSAPLG00000023365)	ENSAPLG00000030604	ENSAPLG00000014570	ENSAPLG00000014951
Pink-footed goose	MODERN SPECIES	362						ENSABRG00000006524	ENSABRG00000006516	ENSABRG00000006508	HAPLN2 (ENSABRG00000006504)	RHBG (ENSABRG00000006501) #37	MEF2D (ENSABRG00000006481)	ENSABRG00000006474	IQGAP3 (ENSABRG00000006462)	ENSABRG00000006447	ENSABRG00000006441	LAMTOR2 (ENSABRG00000006434) #22	UBQLN4 (ENSABRG00000006418) #21	RAB25 (ENSABRG00000006405) #23	ENSABRG00000006400	MEX3A (ENSABRG00000006394) #24	LMNA (ENSABRG00000006382) #25	SEMA4A (ENSABRG00000006369) #26	SLC25A44 (ENSABRG00000006360) #27	PMF1 (ENSABRG00000006352) #28	ENSABRG00000006348 #29	SMG5 (ENSABRG00000006336) #31	HORMAD1 (ENSABRG00000006294)	GOLPH3L (ENSABRG00000006261)	ENSA (ENSABRG00000006255)	MCL1 (ENSABRG00000006246)
Phasianidae	ANCESTRAL SPECIES	30	ENSGT00390000012355.B.b	ENSGT01100000264033	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165	ENSGT00950000182940.b.a.b	ENSGT00870000136537	ENSGT00940000160276	ENSGT00940000159172	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00960000189418	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000010993	ENSGT00950000182900.D	ENSGT00390000000230	ENSGT00390000019377.a
Phasianidae_b	ANCESTRAL SPECIES	38	ENSGT00730000111185	ENSGT00390000012355.B.b	ENSGT01100000264033	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165	ENSGT00950000182940.b.a.b	ENSGT00870000136537	ENSGT00940000160276	ENSGT00940000159172	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00440000037582
Chicken	MODERN SPECIES	17	ENSGALG00010028698	BOLA1 (ENSGALG00010027977)	SV2A (ENSGALG00010028753)	SF3B4 (ENSGALG00010028887)	MTMR11 (ENSGALG00010028752)	OTUD7B (ENSGALG00010028750)	ENSGALG00010027297	ENSGALG00010027354	ARHGEF2 (ENSGALG00010027310) #18	IQGAP3 (ENSGALG00010028108)	TTC24 (ENSGALG00010028097)	ENSGALG00010028094	NAXE (ENSGALG00010028088)	ENSGALG00010028085	UBQLN4 (ENSGALG00010028081) #21	LAMTOR2 (ENSGALG00010028078) #22	RAB25 (ENSGALG00010028075) #23	ENSGALG00010028072	MEX3A (ENSGALG00010028070) #24	ENSGALG00010028066 #25	ENSGALG00010027294	ENSGALG00010027978	ENSGALG00010027300	ANP32E (ENSGALG00010028507)	PLEKHO1 (ENSGALG00010028502)	VPS45 (ENSGALG00010028500)	ENSGALG00010028494	ENSGALG00010028492	NECTIN4 (ENSGALG00010028490)	ARHGAP30 (ENSGALG00010028486)	USF1 (ENSGALG00010028485)
Turkey	MODERN SPECIES	1201															ENSMGAG00000001186	LAMTOR2 (ENSMGAG00000022966) #22	UBQLN4 (ENSMGAG00000000655) #21	ENSMGAG00000018320	ENSMGAG00000015563 #24	ENSMGAG00000020816
Japanese quail	MODERN SPECIES	17											ANP32E (ENSCJPG00005013913)	PLEKHO1 (ENSCJPG00005013914)	VPS45 (ENSCJPG00005013915)	ENSCJPG00005013916	UBQLN4 (ENSCJPG00005013917) #21	LAMTOR2 (ENSCJPG00005013918) #22	RAB25 (ENSCJPG00005013919) #23	ENSCJPG00005013920	MEX3A (ENSCJPG00005013921) #24	LMNA (ENSCJPG00005013923) #25	SEMA4A (ENSCJPG00005013924) #26	SLC25A44 (ENSCJPG00005013925) #27	ENSCJPG00005013926	SMG5 (ENSCJPG00005013927) #31	TMEM79 (ENSCJPG00005013928) #32	GLMP (ENSCJPG00005013929) #33	CCT3 (ENSCJPG00005013930) #35	PEX19 (ENSCJPG00005013931)	ENSCJPG00005013932	PEA15 (ENSCJPG00005013933)	CASQ1 (ENSCJPG00005013934)
Neognathae_b	ANCESTRAL SPECIES	33	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19
Neognathae_c	ANCESTRAL SPECIES	33	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b.z	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509.c #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT00390000005131 #33	ENSGT00570000079224 #35	ENSGT00390000005125 #19	ENSGT01030000234542.b.a.a.a.b
Golden eagle	MODERN SPECIES	25	MRPL24 (ENSACCG00020001839)	METTL25B (ENSACCG00020001855)	ISG20L2 (ENSACCG00020001876)	CRABP2 (ENSACCG00020001890)	ENSACCG00020001921	ENSACCG00020001947	ENSACCG00020001960	BCAN (ENSACCG00020001979)	HAPLN2 (ENSACCG00020002002)	RHBG (ENSACCG00020002042) #37	MEF2D (ENSACCG00020002103)	IQGAP3 (ENSACCG00020002188)	NAXE (ENSACCG00020002232)	GPATCH4 (ENSACCG00020002248)	UBQLN4 (ENSACCG00020002302) #21	LAMTOR2 (ENSACCG00020002334) #22	RAB25 (ENSACCG00020002353) #23	ENSACCG00020002373	MEX3A (ENSACCG00020002384) #24	LMNA (ENSACCG00020002398) #25	SEMA4A (ENSACCG00020002423) #26	SLC25A44 (ENSACCG00020002449) #27	ENSACCG00020002471	ENSACCG00020002491 #29	PAQR6 (ENSACCG00020002533) #30	SMG5 (ENSACCG00020002562) #31	TMEM79 (ENSACCG00020002589) #32	GLMP (ENSACCG00020002603) #33	CCT3 (ENSACCG00020002624) #35	SSR2 (ENSACCG00020002642) #19	TPM3 (ENSACCG00020002664)
Kakapo	MODERN SPECIES	60	CRABP2 (ENSSHBG00005016949)	ENSSHBG00005016942	ENSSHBG00005016935	ENSSHBG00005016928	BCAN (ENSSHBG00005016921)	HAPLN2 (ENSSHBG00005016914)	RHBG (ENSSHBG00005016897) #37	MEF2D (ENSSHBG00005016873)	ENSSHBG00005016853	ENSSHBG00005016844	ENSSHBG00005016834	ENSSHBG00005016829	NAXE (ENSSHBG00005016822)	GPATCH4 (ENSSHBG00005016818)	UBQLN4 (ENSSHBG00005016810) #21	LAMTOR2 (ENSSHBG00005016803) #22	RAB25 (ENSSHBG00005016798) #23	ENSSHBG00005016791	MEX3A (ENSSHBG00005016781) #24	LMNA (ENSSHBG00005016768) #25	ENSSHBG00005016763 #26	ENSSHBG00005016749 #26	SLC25A44 (ENSSHBG00005016737) #27	PMF1 (ENSSHBG00005016733) #28	BGLAP (ENSSHBG00005016730) #29	SMG5 (ENSSHBG00005015374) #31	TMEM79 (ENSSHBG00005015292) #32	CCT3 (ENSSHBG00005015253) #35	SSR2 (ENSSHBG00005015244) #19	APH1A (ENSSHBG00005015233)	ENSSHBG00005015053
Passeriformes	ANCESTRAL SPECIES	37	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000154566 #31	ENSGT00390000002390.b #32	ENSGT01030000234542.b.a.a.a.b	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b	ENSGT00390000018324
Passeriformes_d	ANCESTRAL SPECIES	26	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000154566.i #31	ENSGT00390000002390.b #32	ENSGT01030000234542.b.a.a.a.b	ENSGT01090000262236	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b
Flycatcher	MODERN SPECIES	17	MRPL24 (ENSFALG00000003167)	ENSFALG00000028907	ENSFALG00000023585	CRABP2 (ENSFALG00000003205)	ENSFALG00000003229	ENSFALG00000028936	ENSFALG00000025964	ENSFALG00000003292	ENSFALG00000028856	RHBG (ENSFALG00000003358) #37	MEF2D (ENSFALG00000013606)	IQGAP3 (ENSFALG00000002642)	ENSFALG00000002636	NAXE (ENSFALG00000002625)	UBQLN4 (ENSFALG00000002609) #21	LAMTOR2 (ENSFALG00000002604) #22	RAB25 (ENSFALG00000002597) #23	ENSFALG00000002594	MEX3A (ENSFALG00000014982) #24	LMNA (ENSFALG00000002586) #25	SEMA4A (ENSFALG00000002573) #26	SLC25A44 (ENSFALG00000002568) #27	PMF1 (ENSFALG00000028987) #28	ENSFALG00000024781 #29	ENSFALG00000002560 #31	ENSFALG00000002555 #19	ENSFALG00000002550 #35	ENSFALG00000024237	ENSFALG00000024658	ENSFALG00000024050	FLAD1 (ENSFALG00000001270)
Passeriformes_g	ANCESTRAL SPECIES	27	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000154566.i #31	ENSGT00390000002390.b #32	ENSGT01030000234542.b.a.a.a.b	ENSGT01090000262236	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b
Medium ground finch	MODERN SPECIES	247				ENSGFOG00000010020	ENSGFOG00000010024	ENSGFOG00000010028	ENSGFOG00000010037	BCAN (ENSGFOG00000010058)	HAPLN2 (ENSGFOG00000010066)	RHBG (ENSGFOG00000010070) #37	MEF2D (ENSGFOG00000010083)	IQGAP3 (ENSGFOG00000010097)	ENSGFOG00000010121	NAXE (ENSGFOG00000010126)	UBQLN4 (ENSGFOG00000010134) #21	LAMTOR2 (ENSGFOG00000010143) #22	RAB25 (ENSGFOG00000010146) #23	ENSGFOG00000010153	MEX3A (ENSGFOG00000010158) #24	LMNA (ENSGFOG00000010161) #25	SEMA4A (ENSGFOG00000010172) #26	SLC25A44 (ENSGFOG00000010182) #27	SMG5 (ENSGFOG00000010189) #31	TMEM79 (ENSGFOG00000010207) #32	TPM3 (ENSGFOG00000010212)	C1orf43 (ENSGFOG00000010231)	UBAP2L (ENSGFOG00000010247)	ENSGFOG00000010280	AQP10 (ENSGFOG00000010284)	ATP8B2 (ENSGFOG00000010292)	IL6R (ENSGFOG00000010325)
Passeroidea	ANCESTRAL SPECIES	28	ENSGT00940000157485	ENSGT00390000014542	ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000161732 #24	ENSGT00940000157244 #25	ENSGT00940000161509 #26	ENSGT00940000155399 #27	ENSGT00940000162656 #28	ENSGT00410000026290.i #29	ENSGT00940000154566.i #31	ENSGT00390000002390.b #32	ENSGT01030000234542.b.a.a.a.b	ENSGT01090000262236	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b
Zebra finch	MODERN SPECIES	18	METTL25B (ENSTGUG00000024904)	ISG20L2 (ENSTGUG00000028521)	CRABP2 (ENSTGUG00000025174)	ENSTGUG00000024389	ENSTGUG00000022793	ENSTGUG00000026517	BCAN (ENSTGUG00000023506)	HAPLN2 (ENSTGUG00000025869)	RHBG (ENSTGUG00000003473) #37	MEF2D (ENSTGUG00000003481)	IQGAP3 (ENSTGUG00000003501)	ENSTGUG00000003613	NAXE (ENSTGUG00000003621)	ENSTGUG00000003636	UBQLN4 (ENSTGUG00000003644) #21	LAMTOR2 (ENSTGUG00000003670) #22	RAB25 (ENSTGUG00000003675) #23	ENSTGUG00000003680	MEX3A (ENSTGUG00000003692) #24	LMNA (ENSTGUG00000015888) #25	SEMA4A (ENSTGUG00000003695) #26	ENSTGUG00000018930	SLC25A44 (ENSTGUG00000015885) #27	ENSTGUG00000024980 #28	BGLAP (ENSTGUG00000003747) #29	SMG5 (ENSTGUG00000003748) #31	TMEM79 (ENSTGUG00000022613) #32	TPM3 (ENSTGUG00000003785)	ENSTGUG00000029068	UBAP2L (ENSTGUG00000003834)	HAX1 (ENSTGUG00000003919)
Common canary	MODERN SPECIES	81						ENSSCAG00000014510	ENSSCAG00000014506	ENSSCAG00000014502	HAPLN2 (ENSSCAG00000014493)	RHBG (ENSSCAG00000014483) #37	MEF2D (ENSSCAG00000014461)	IQGAP3 (ENSSCAG00000013560)	NAXE (ENSSCAG00000013155)	ENSSCAG00000013149	UBQLN4 (ENSSCAG00000013141) #21	LAMTOR2 (ENSSCAG00000013138) #22	RAB25 (ENSSCAG00000013131) #23	ENSSCAG00000013124	MEX3A (ENSSCAG00000013118) #24	LMNA (ENSSCAG00000013107) #25	SEMA4A (ENSSCAG00000013096) #26	SLC25A44 (ENSSCAG00000013089) #27	PMF1 (ENSSCAG00000013084) #28	BGLAP (ENSSCAG00000013078) #29	SMG5 (ENSSCAG00000013067) #31	TMEM79 (ENSSCAG00000013060) #32	ENSSCAG00000013039	C1orf43 (ENSSCAG00000013023)	UBAP2L (ENSSCAG00000012983)	HAX1 (ENSSCAG00000012964)	AQP10 (ENSSCAG00000012955)
Anura	ANCESTRAL SPECIES	155		ENSGT00530000063745.a	ENSGT00940000159724	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #37	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00390000018360	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT00940000155795	ENSGT00390000012496.b	ENSGT00940000164480	ENSGT00390000014633	ENSGT00940000155451
Leishan spiny toad	MODERN SPECIES	4	CRABP2 (ENSLLEG00000029301)	ENSLLEG00000029323	ENSLLEG00000029355	ENSLLEG00000029391	ENSLLEG00000029407	ENSLLEG00000029460	HAPLN2 (ENSLLEG00000029472)	RHBG (ENSLLEG00000029486) #37	ENSLLEG00000029507	MEF2D (ENSLLEG00000029517)	IQGAP3 (ENSLLEG00000029544)	TTC24 (ENSLLEG00000021781)	NAXE (ENSLLEG00000021902)	ENSLLEG00000022057	UBQLN4 (ENSLLEG00000022159) #21	LAMTOR2 (ENSLLEG00000022949) #22	RAB25 (ENSLLEG00000023071) #23	ENSLLEG00000023357	ENSLLEG00000023375	ENSLLEG00000023443	ENSLLEG00000023463	APH1A (ENSLLEG00000023550)	ENSLLEG00000023606	KIRREL1 (ENSLLEG00000023640)	ENSLLEG00000023756	ENSLLEG00000023770	CERS2 (ENSLLEG00000023791)	ENSLLEG00000024071	ENSLLEG00000024161	ENSLLEG00000024205	ENSLLEG00000024244
Coelacanth	MODERN SPECIES	815								rhbg (ENSLACG00000001771) #37	hapln2 (ENSLACG00000004507)	bcan (ENSLACG00000005636)	IQGAP3 (ENSLACG00000007771)	TTC24 (ENSLACG00000009122)	NAXE (ENSLACG00000009488)	GPATCH4 (ENSLACG00000009700)	UBQLN4 (ENSLACG00000010468) #21	LAMTOR2 (ENSLACG00000010926) #22	RAB25 (ENSLACG00000011157) #23	rab11al (ENSLACG00000011380)	MEX3A (ENSLACG00000011943) #24	LMNA (ENSLACG00000012778) #25	ENSLACG00000013812	SLC25A44 (ENSLACG00000014139) #27	PMF1 (ENSLACG00000014303) #28	ENSLACG00000014491
Actinopterygii	ANCESTRAL SPECIES	130	ENSGT00950000182870.a.a.b	ENSGT00390000002996	ENSGT00390000009464	ENSGT00530000063335.B.a.a	ENSGT00940000160917	ENSGT00940000157619	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248 #12	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00940000165149	ENSGT00940000166523
Reedfish	MODERN SPECIES	10	ENSECRG00000002718	ENSECRG00000002749	ENSECRG00000002788	mtx1b (ENSECRG00000002792)	thbs3b (ENSECRG00000002802)	nudt17 (ENSECRG00000002806)	ENSECRG00000002821	ENSECRG00000002853 #30	smg5 (ENSECRG00000003050) #31	ENSECRG00000003110	dcst2 (ENSECRG00000003185)	ENSECRG00000003203	ENSECRG00000003210	ENSECRG00000003217	ubqln4 (ENSECRG00000003226) #21	lamtor2 (ENSECRG00000003252) #22	rab25b (ENSECRG00000003294) #23	rab11al (ENSECRG00000003309)	ENSECRG00000003322	ENSECRG00000003355	ENSECRG00000003409	jtb (ENSECRG00000003421)	ENSECRG00000003430	CREB3L4 (ENSECRG00000003438)	SLC39A1 (ENSECRG00000003449)	ENSECRG00000003464	DENND4B (ENSECRG00000003498)	ENSECRG00000003544 #28	ENSECRG00000003560	gnrhr1 (ENSECRG00000003574)	gatad2b (ENSECRG00000003583)
Neopterygii	ANCESTRAL SPECIES	155	ENSGT00760000119652	ENSGT00390000005869.a	ENSGT00730000111185	ENSGT00940000159172	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230 #23	ENSGT00390000008765	ENSGT00390000007227.a	ENSGT00390000010652.A.b	ENSGT00940000160472	ENSGT00940000162656 #28	ENSGT00940000164559.B	ENSGT01050000244841.A.a.a	ENSGT00730000111346	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000004097.b
Spotted gar	MODERN SPECIES	663	ENSLOCG00000008968	ENSLOCG00000008950	ENSLOCG00000008940	ENSLOCG00000017691	rpz2 (ENSLOCG00000017690)	ENSLOCG00000017689	ENSLOCG00000017688	ENSLOCG00000017687	rpz6 (ENSLOCG00000017686)	rpz5 (ENSLOCG00000017685)	rpz4 (ENSLOCG00000017684)	tmem176l.4 (ENSLOCG00000008935)	ENSLOCG00000008923	zgc:174938 (ENSLOCG00000008906)	UBQLN4 (ENSLOCG00000008897) #21	lamtor2 (ENSLOCG00000008891) #22	rab25a (ENSLOCG00000008881) #23	rab11al (ENSLOCG00000008865)	ENSLOCG00000008857	lmna (ENSLOCG00000008848) #25	ENSLOCG00000008831	gpatch4 (ENSLOCG00000008820)	naxe (ENSLOCG00000008812)	DENND4B (ENSLOCG00000008793)	si:dkey-6i22.5 (ENSLOCG00000008782) #28	ENSLOCG00000008768	gnrhr1 (ENSLOCG00000008760)	ENSLOCG00000008748	iqgap3 (ENSLOCG00000008716)	gatad2b (ENSLOCG00000008705)	ENSLOCG00000008695
Osteoglossocephalai	ANCESTRAL SPECIES	27	ENSGT00940000160276	ENSGT00870000136537	ENSGT00950000182940.b.a.b.a.b	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000167106	ENSGT00940000159463	ENSGT00950000182844.b.b.a #37	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475
Osteoglossiformes	ANCESTRAL SPECIES	1	ENSGT00940000158438.n	ENSGT00940000154566 #31	ENSGT00940000160567.p #30	ENSGT00940000159412.e	ENSGT00730000111185.db.a	ENSGT00940000159172.j	ENSGT00940000160276.l	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a.s	ENSGT00510000051675	ENSGT00390000006100 #22	ENSGT00940000157244.a.b.g #25	ENSGT00940000155333.B.a	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000167106.c	ENSGT00940000159463.k	ENSGT00950000182844.b.b.a.d #37	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475	ENSGT00940000164422	ENSGT00940000165314.a	ENSGT00940000154996.a.a.a
Asian bonytongue	MODERN SPECIES	9	smg5 (ENSSFOG00015024175) #31	PAQR6 (ENSSFOG00015030705) #30	ENSSFOG00015024174	ntrk1 (ENSSFOG00015024172)	rbm8a (ENSSFOG00015024171)	OTUD7B (ENSSFOG00015024170)	MTMR11 (ENSSFOG00015024169)	SV2A (ENSSFOG00015024167)	bola1 (ENSSFOG00015024166)	nr2f5 (ENSSFOG00015024164)	rpz2 (ENSSFOG00015024163)	rpz (ENSSFOG00015024162)	rpz6 (ENSSFOG00015024161)	rpz5 (ENSSFOG00015024160)	tmem176l.4 (ENSSFOG00015024159)	lamtor2 (ENSSFOG00015031724) #22	ENSSFOG00015024157	lmna (ENSSFOG00015024156) #25	ENSSFOG00015024155	gpatch4 (ENSSFOG00015024154)	ENSSFOG00015024153	ENSSFOG00015024151	mef2d (ENSSFOG00015024150)	RHBG (ENSSFOG00015024147) #37	hapln2 (ENSSFOG00015024144)	bcan (ENSSFOG00015024142)	ISG20L2 (ENSSFOG00015024140)	mettl25b (ENSSFOG00015024139)	s100a1 (ENSSFOG00015024138)	tlr18 (ENSSFOG00015024137)	si:ch211-113g11.6 (ENSSFOG00015011994)
P. kingsleyae	MODERN SPECIES	65	smg5 (ENSPKIG00000009402) #31	PAQR6 (ENSPKIG00000009491) #30	ntrk1 (ENSPKIG00000009512)	afp4 (ENSPKIG00000009538)	rbm8a (ENSPKIG00000009551)	ENSPKIG00000009597	ENSPKIG00000009661	SV2A (ENSPKIG00000009685)	bola1 (ENSPKIG00000009727)	nr2f5 (ENSPKIG00000009747)	rpz2 (ENSPKIG00000009759)	rpz (ENSPKIG00000009770)	rpz6 (ENSPKIG00000009788)	rpz5 (ENSPKIG00000009799)	tmem176l.4 (ENSPKIG00000009813)	lamtor2 (ENSPKIG00000009843) #22	ENSPKIG00000009869	lmna (ENSPKIG00000009904) #25	ENSPKIG00000010024	gpatch4 (ENSPKIG00000010081)	ENSPKIG00000010128	ENSPKIG00000010168	ENSPKIG00000010176	mef2d (ENSPKIG00000010252)	RHBG (ENSPKIG00000010394) #37	hapln2 (ENSPKIG00000010436)	bcan (ENSPKIG00000010476)	ISG20L2 (ENSPKIG00000010547)	mettl25b (ENSPKIG00000010567)	tlr18 (ENSPKIG00000010606)	si:ch211-113g11.6 (ENSPKIG00000010655)
Clupeocephala	ANCESTRAL SPECIES	27	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT01010000223409	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000167106	ENSGT00940000159463	ENSGT00950000182844.b.b.a #37	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475
Otomorpha	ANCESTRAL SPECIES	8	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000165143.a.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT01010000223409	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000167106	ENSGT00940000159463	ENSGT00950000182844.b.b.a #37	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475
Clupeiformes	ANCESTRAL SPECIES	79	ENSGT00760000119652	ENSGT00730000111185.db.a	ENSGT00940000159172	ENSGT00940000160276	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000165143.a.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01100000263776	ENSGT00940000167106	ENSGT00940000159463	ENSGT00950000182844.b.b.a #37	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475
Atlantic herring	MODERN SPECIES	2	otud7b (ENSCHAG00000009441)	mtmr11 (ENSCHAG00000009351)	SV2A (ENSCHAG00000009146)	bola1 (ENSCHAG00000009117)	nr2f5 (ENSCHAG00000009093)	ENSCHAG00000008936	rpz2 (ENSCHAG00000008923)	rpz (ENSCHAG00000008914)	ENSCHAG00000008805	rpz6 (ENSCHAG00000008797)	rpz5 (ENSCHAG00000008789)	rpz4 (ENSCHAG00000008787)	tmem176l.4 (ENSCHAG00000008783)	zgc:174938 (ENSCHAG00000008762)	ubqln4 (ENSCHAG00000008716) #21	lamtor2 (ENSCHAG00000008683) #22	rab25b (ENSCHAG00000008626) #23	rab11al (ENSCHAG00000008561)	ENSCHAG00000008553	lmna (ENSCHAG00000008483) #25	ENSCHAG00000008446	ENSCHAG00000008391	gpatch4 (ENSCHAG00000008364)	ENSCHAG00000008348	ENSCHAG00000008339	ENSCHAG00000008333	mef2d (ENSCHAG00000007966)	rhbg (ENSCHAG00000006531) #37	hapln2 (ENSCHAG00000006483)	bcan (ENSCHAG00000006421)	ISG20L2 (ENSCHAG00000006406)
Denticle herring	MODERN SPECIES	15	PAQR6 (ENSDCDG00000014390) #30	ntrk1 (ENSDCDG00000014373)	rbm8a (ENSDCDG00000014349)	otud7b (ENSDCDG00000014335)	mtmr11 (ENSDCDG00000014305)	SV2A (ENSDCDG00000014031)	bola1 (ENSDCDG00000013964)	nr2f5 (ENSDCDG00000013941)	rpz2 (ENSDCDG00000013924)	rpz (ENSDCDG00000013912)	rpz6 (ENSDCDG00000023300)	rpz5 (ENSDCDG00000023298)	rpz4 (ENSDCDG00000023296)	zgc:174938 (ENSDCDG00000023295)	ubqln4 (ENSDCDG00000023261) #21	lamtor2 (ENSDCDG00000023240) #22	rab25b (ENSDCDG00000023191) #23	rab11al (ENSDCDG00000023147)	ENSDCDG00000023146	lmna (ENSDCDG00000023114) #25	ENSDCDG00000023091	gpatch4 (ENSDCDG00000023083)	ENSDCDG00000023081	ENSDCDG00000023078	mef2d (ENSDCDG00000023068)	rhbg (ENSDCDG00000023016) #37	hapln2 (ENSDCDG00000023006)	bcan (ENSDCDG00000022997)	ENSDCDG00000022995	ENSDCDG00000022994	mettl25b (ENSDCDG00000022993)
Otophysi	ANCESTRAL SPECIES	1	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000165143.a.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT01010000223409	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00410000029015	ENSGT00940000155427.a	ENSGT00950000182883.a.b.b	ENSGT00390000005530.a.b	ENSGT00950000183046.b.a	ENSGT00390000015038	ENSGT00940000161647	ENSGT01090000260131	ENSGT00940000164651.a.a.d	ENSGT00940000163195.A.c	ENSGT00390000001883	ENSGT00940000178392
Characiphysae	ANCESTRAL SPECIES	37	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000165143.a.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00410000029015	ENSGT00940000155427.a	ENSGT00950000182883.a.b.b	ENSGT00390000005530.a.b	ENSGT00950000183046.b.a	ENSGT00390000015038	ENSGT00940000161647	ENSGT01090000260131	ENSGT00940000164651.a.a.d	ENSGT00940000163195.A.c	ENSGT00390000001883	ENSGT00940000178392
Channel catfish	MODERN SPECIES	15	bola1 (ENSIPUG00000006373)	nr2f5 (ENSIPUG00000006336)	rpz2 (ENSIPUG00000006329)	rpz (ENSIPUG00000006322)	rpz6 (ENSIPUG00000006309)	rpz5 (ENSIPUG00000006301)	rpz4 (ENSIPUG00000006299)	tmem176l.2 (ENSIPUG00000006283)	rpz (ENSIPUG00000006275)	rpz5 (ENSIPUG00000006263)	rpz2 (ENSIPUG00000006255)	rpz2 (ENSIPUG00000006245)	rpz5 (ENSIPUG00000006235)	zgc:174938 (ENSIPUG00000006220)	Ubqln4 (ENSIPUG00000006179) #21	lamtor2 (ENSIPUG00000006155) #22	Rab25 (ENSIPUG00000006126) #23	RAB11A (ENSIPUG00000006091)	mex3a (ENSIPUG00000006083)	ENSIPUG00000006069	THSD7A (ENSIPUG00000005855)	ENSIPUG00000005827	ica1 (ENSIPUG00000005789)	mios (ENSIPUG00000005746)	col28a1b (ENSIPUG00000005698)	ENSIPUG00000005674	septin7b (ENSIPUG00000005643)	slc25a32 (ENSIPUG00000005619)	CTHRC1 (ENSIPUG00000005595)	CSMD3 (ENSIPUG00000005406)	eif3ha (ENSIPUG00000005370)
Characiphysae_b	ANCESTRAL SPECIES	37	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000165143.a.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00410000029015	ENSGT00940000155427.a	ENSGT00950000182883.a.b.b	ENSGT00390000005530.a.b	ENSGT00950000183046.b.a	ENSGT00390000015038	ENSGT00940000161647	ENSGT01090000260131	ENSGT00940000164651.a.a.d	ENSGT00390000001883	ENSGT00940000178392	ENSGT00940000154222.d.a
Characoidei	ANCESTRAL SPECIES	34	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000165143.a.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00410000029015	ENSGT00940000155427.a	ENSGT00950000182883.a.b.b	ENSGT00390000005530.a.b	ENSGT00950000183046.b.a	ENSGT00390000015038	ENSGT00940000163195.A.c	ENSGT00940000161647	ENSGT01090000260131	ENSGT00940000164651.a.a.d	ENSGT00390000001883	ENSGT00940000178392
Red-bellied piranha	MODERN SPECIES	144	SV2A (ENSPNAG00000005350)	bola1 (ENSPNAG00000028796)	nr2f5 (ENSPNAG00000005286)	rpz2 (ENSPNAG00000006746)	rpz (ENSPNAG00000006747)	rpz6 (ENSPNAG00000006975)	rpz5 (ENSPNAG00000004454)	rpz5 (ENSPNAG00000004457)	rpz4 (ENSPNAG00000004460)	ENSPNAG00000005966	ENSPNAG00000005320	ENSPNAG00000006283	ENSPNAG00000006874	zgc:174938 (ENSPNAG00000004470)	ubqln4 (ENSPNAG00000029005) #21	lamtor2 (ENSPNAG00000004495) #22	rab25b (ENSPNAG00000006569) #23	rab11al (ENSPNAG00000029085)	ENSPNAG00000004505	ENSPNAG00000029110	THSD7A (ENSPNAG00000029273)	ENSPNAG00000006797	ICA1 (ENSPNAG00000029356)	GLCCI1 (ENSPNAG00000029367)	mios (ENSPNAG00000029423)	ENSPNAG00000005400
Mexicana tetra	MODERN SPECIES	36	ENSAMXG00000024623	mtmr11 (ENSAMXG00000024622)	SV2A (ENSAMXG00000024624)	bola1 (ENSAMXG00000025436)	nr2f5 (ENSAMXG00000040260)	rpz2 (ENSAMXG00000025025)	rpz (ENSAMXG00000025026)	rpz6 (ENSAMXG00000025027)	rpz5 (ENSAMXG00000025028)	rpz4 (ENSAMXG00000025029)	ENSAMXG00000032508	ENSAMXG00000038518	ENSAMXG00000034787	zgc:174938 (ENSAMXG00000024628)	ubqln4 (ENSAMXG00000024629) #21	lamtor2 (ENSAMXG00000039223) #22	rab25b (ENSAMXG00000029712) #23	rab11al (ENSAMXG00000024632)	ENSAMXG00000024633
Electric eel	MODERN SPECIES	219													rpz4 (ENSEEEG00000010518)	zgc:174938 (ENSEEEG00000010515)	ubqln4 (ENSEEEG00000010514) #21	lamtor2 (ENSEEEG00000010512) #22	rab25b (ENSEEEG00000010509) #23	rab11al (ENSEEEG00000010508)	ENSEEEG00000010507	THSD7A (ENSEEEG00000010503)	ENSEEEG00000010499	rbm24b (ENSEEEG00000010498)	KIF13A (ENSEEEG00000010491)	ENSEEEG00000010487	ptdss1a (ENSEEEG00000010482)	si:ch211-269k10.5 (ENSEEEG00000010479)	ENSEEEG00000010476	ENSEEEG00000010471	NKD2 (ENSEEEG00000010470)	trip13 (ENSEEEG00000010432)	brd9 (ENSEEEG00000010419)
Cyprinoidei	ANCESTRAL SPECIES	25	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000165143.a.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.e.a	ENSGT00390000010118.c.a.a	ENSGT00510000051675.e.b.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149.e	ENSGT00940000166523	ENSGT00410000029015	ENSGT00940000155427.a	ENSGT00950000182883.a.b.b	ENSGT00390000005530.a.b	ENSGT00950000183046.b.a	ENSGT00390000015038	ENSGT00940000163195.A.c	ENSGT00940000164651.a.a.d	ENSGT00390000001883	ENSGT00940000154222.d.a.k	ENSGT00920000149145	ENSGT00390000018094.l
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	83	ENSGT00940000160276.f	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a.a	ENSGT00510000048165	ENSGT00940000165753.f	ENSGT00940000165143.a.b.c	ENSGT00940000165143.a.a.e.a.a	ENSGT00390000008158.b.b.a.b.c.b.a	ENSGT00940000165143.a.a.f	ENSGT00390000008158.b.b.a.b.c.b.b.a.a	ENSGT00390000008158.b.a.f	ENSGT00390000008158.b.b.a.a.b	ENSGT00510000051675.e.a	ENSGT00390000010118.c.a.a.a.b	ENSGT00940000155620.r.d #21	ENSGT00390000006100.o #22	ENSGT00940000158230.b.a.a.a #23	ENSGT00940000165149.e.a	ENSGT00940000166523.f	ENSGT00410000029015.a	ENSGT00940000155427.a.a	ENSGT00950000182883.a.b.b.a.a	ENSGT00390000005530.a.b.x	ENSGT00950000183046.b.a.b	ENSGT00390000015038.e	ENSGT00940000163195.A.c	ENSGT00940000164651.a.a.d
Cyprininae_a	ANCESTRAL SPECIES	117	ENSGT00940000160276.f	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a.a	ENSGT00510000048165	ENSGT00940000165753.f	ENSGT00940000165143.a.b.c	ENSGT00940000165143.a.a.e.a.a	ENSGT00390000008158.b.b.a.b.c.b.a	ENSGT00940000165143.a.a.f	ENSGT00390000008158.b.b.a.b.c.b.b.a.a	ENSGT00390000008158.b.a.f	ENSGT00390000008158.b.b.a.a.b	ENSGT00510000051675.e.a	ENSGT00390000010118.c.a.a.a.b	ENSGT00940000155620.r.d #21	ENSGT00390000006100.o #22	ENSGT00940000158230.b.a.a.a #23	ENSGT00940000165149.f	ENSGT00940000165149.e.a	ENSGT00940000166523.f	ENSGT00410000029015.a	ENSGT00940000155427.a.a	ENSGT00950000182883.a.b.b.a.a	ENSGT00390000005530.a.b.x	ENSGT00950000183046.b.a.b	ENSGT00390000015038.e	ENSGT00940000163195.A.c	ENSGT00940000164651.a.a.d
Golden-line barbel	MODERN SPECIES	152	mtmr11 (ENSSGRG00000048241)	SV2A (ENSSGRG00000048249)	bola1 (ENSSGRG00000048479)	nr2f5 (ENSSGRG00000048480)	rpz2 (ENSSGRG00000048484)	rpz (ENSSGRG00000048485)	ENSSGRG00000048486	rpz (ENSSGRG00000048487)	ENSSGRG00000048488	rpz5 (ENSSGRG00000048490)	rpz4 (ENSSGRG00000048492)	ENSSGRG00000048493	ENSSGRG00000048495	ENSSGRG00000048497	ubqln4 (ENSSGRG00000048501) #21	lamtor2 (ENSSGRG00000048585) #22	rab25b (ENSSGRG00000048591) #23	rab11al (ENSSGRG00000048595)	ENSSGRG00000048597	ENSSGRG00000048598	THSD7A (ENSSGRG00000048604)	ENSSGRG00000048621	ICA1 (ENSSGRG00000048623)	mios (ENSSGRG00000048627)	col28a1b (ENSSGRG00000048643)	ENSSGRG00000048647	ENSSGRG00000048648	ENSSGRG00000048675	slc25a32b (ENSSGRG00000049805)	CTHRC1 (ENSSGRG00000049808)	ENSSGRG00000049819
Common carp reference	MODERN SPECIES	47	nr2f5 (ENSCCRG00000040995)	rpz2 (ENSCCRG00000072743)	rpz (ENSCCRG00000068308)	ENSCCRG00000003846	rpz (ENSCCRG00000059943)	ENSCCRG00000079744	rpz5 (ENSCCRG00000068261)	rpz4 (ENSCCRG00000003839)	ENSCCRG00000058441	ENSCCRG00000003597	ENSCCRG00000003589	ENSCCRG00000058729	ENSCCRG00000003586	ENSCCRG00000003583	ubqln4 (ENSCCRG00000003459) #21	lamtor2 (ENSCCRG00000063048) #22	rab25b (ENSCCRG00000064751) #23	ENSCCRG00000003379	ENSCCRG00000067257	ENSCCRG00000031594	ENSCCRG00000043361	ENSCCRG00000069387	ENSCCRG00000037415	ENSCCRG00000037399	mios (ENSCCRG00000046225)	col28a1b (ENSCCRG00000042004)	ENSCCRG00000042019	septin7b (ENSCCRG00000078615)	slc25a32b (ENSCCRG00000061846)	ENSCCRG00000045364	ENSCCRG00000060477
Goldfish	MODERN SPECIES	7	rbm8a (ENSCARG00000002532)	otud7b (ENSCARG00000002511)	mtmr11 (ENSCARG00000002481)	SV2A (ENSCARG00000002253)	bola1 (ENSCARG00000002189)	nr2f5 (ENSCARG00000002177)	rpz2 (ENSCARG00000002157)	rpz (ENSCARG00000002148)	ENSCARG00000002136	rpz (ENSCARG00000002127)	ENSCARG00000002117	rpz5 (ENSCARG00000002111)	rpz4 (ENSCARG00000002104)	ENSCARG00000002034	ubqln4 (ENSCARG00000024882) #21	lamtor2 (ENSCARG00000024852) #22	rab25b (ENSCARG00000024813) #23	rab11al (ENSCARG00000024782)	ENSCARG00000024765	ENSCARG00000024755	THSD7A (ENSCARG00000024164)	ENSCARG00000024135	ICA1 (ENSCARG00000024114)	ENSCARG00000024110	mios (ENSCARG00000024080)	col28a1b (ENSCARG00000024055)	ENSCARG00000023971	septin7b (ENSCARG00000020970)	slc25a32b (ENSCARG00000020867)	CTHRC1 (ENSCARG00000020857)	CSMD3 (ENSCARG00000020568)
Cyprininae	ANCESTRAL SPECIES	84	ENSGT00730000111185.eb.a	ENSGT00940000159172.c	ENSGT00940000160276.e	ENSGT00950000182940.b.a.b.a.a.b	ENSGT00940000165753.e	ENSGT00940000165143.a.b.d	ENSGT00940000165143.a.a.e.a.b	ENSGT00390000008158.b.b.a.b.c.a	ENSGT00390000008158.b.b.a.b.d	ENSGT00390000008158.b.a.e	ENSGT00390000008158.b.b.a.a.a	ENSGT00390000010118.c.a.a.a.a	ENSGT00940000163727.r	ENSGT00510000051675.e.b.b	ENSGT00940000155620.r.c #21	ENSGT00390000006100.p #22	ENSGT00940000158230.b.a.a.b #23	ENSGT00940000158230.b.a.b #23	ENSGT00940000165149.e.b	ENSGT00940000166523.e	ENSGT00410000029015.b	ENSGT00940000155427.a.b	ENSGT00950000182883.a.b.b.a.b	ENSGT00390000005530.a.b.y	ENSGT00950000183046.b.a.a	ENSGT00390000015038.f	ENSGT00390000001883	ENSGT00940000154222.d.a.k	ENSGT00920000149145.m.a	ENSGT00390000018094.l.a	ENSGT00940000155549.a.b.c
Goldfish	MODERN SPECIES	35	ENSCARG00000050558	rbm8a (ENSCARG00000050575)	otud7b (ENSCARG00000050632)	mtmr11 (ENSCARG00000050674)	SV2A (ENSCARG00000050747)	nr2f5 (ENSCARG00000050971)	rpz (ENSCARG00000051041)	ENSCARG00000051047	ENSCARG00000051078	rpz5 (ENSCARG00000051086)	rpz4 (ENSCARG00000051098)	ENSCARG00000051113	ENSCARG00000051145	tmem176l.2 (ENSCARG00000051174)	ubqln4 (ENSCARG00000051231) #21	lamtor2 (ENSCARG00000051675) #22	rab25b (ENSCARG00000051711) #23	rab11al (ENSCARG00000051789)	ENSCARG00000051816	ENSCARG00000051823	THSD7A (ENSCARG00000051904)	ENSCARG00000052214	ENSCARG00000052226	ENSCARG00000052250	ENSCARG00000052270	mios (ENSCARG00000052288)	ENSCARG00000052520	slc25a32b (ENSCARG00000052804)	CTHRC1 (ENSCARG00000052835)	CSMD3 (ENSCARG00000052896)	EIF3H (ENSCARG00000053281)
Cyprininae_a	ANCESTRAL SPECIES	78	ENSGT00730000111185.eb.a	ENSGT00940000159172.c	ENSGT00940000160276.e	ENSGT00950000182940.b.a.b.a.a.b	ENSGT00940000165753.e	ENSGT00940000165143.a.b.d	ENSGT00940000165143.a.a.e.a.b	ENSGT00390000008158.b.b.a.b.c.a	ENSGT00390000008158.b.b.a.b.d	ENSGT00390000008158.b.a.e	ENSGT00390000008158.b.b.a.a.a	ENSGT00390000010118.c.a.a.a.a	ENSGT00940000163727.r	ENSGT00510000051675.e.b.b	ENSGT00940000155620.r.c #21	ENSGT00390000006100.p #22	ENSGT00940000158230.b.a.a.b #23	ENSGT00940000158230.b.a.b #23	ENSGT00940000165149.e.b	ENSGT00940000166523.e	ENSGT00940000155427.a.b	ENSGT00950000182883.a.b.b.a.b	ENSGT00390000005530.a.b.y	ENSGT00950000183046.b.a.a	ENSGT00390000015038.f	ENSGT00390000001883	ENSGT00940000154222.d.a.k	ENSGT00920000149145.m.a	ENSGT00390000018094.l.a	ENSGT00940000155549.a.b.c	ENSGT00730000111042.`b.a
Golden-line barbel	MODERN SPECIES	149	ENSSGRG00000001702	rbm8a (ENSSGRG00000001665)	otud7b (ENSSGRG00000001364)	mtmr11 (ENSSGRG00000001328)	SV2A (ENSSGRG00000001311)	ENSSGRG00000001302	nr2f5 (ENSSGRG00000001240)	rpz2 (ENSSGRG00000001223)	ENSSGRG00000001214	ENSSGRG00000001207	rpz5 (ENSSGRG00000001195)	rpz4 (ENSSGRG00000001186)	ENSSGRG00000001174	ENSSGRG00000001156	ubqln4 (ENSSGRG00000053311) #21	lamtor2 (ENSSGRG00000053310) #22	rab25b (ENSSGRG00000053309) #23	rab11al (ENSSGRG00000053308)	ENSSGRG00000053307	THSD7A (ENSSGRG00000053303)	ENSSGRG00000053297	ENSSGRG00000053290	mios (ENSSGRG00000053286)	ENSSGRG00000053284	septin7b (ENSSGRG00000052958)	CTHRC1 (ENSSGRG00000052943)	ENSSGRG00000052930	eif3ha (ENSSGRG00000052895)	rad21a (ENSSGRG00000052859)	EXT1 (ENSSGRG00000052834)	ENSSGRG00000052832
Common carp reference	MODERN SPECIES	2	mtmr11 (ENSCCRG00000005000)	SV2A (ENSCCRG00000003867)	nr2f5 (ENSCCRG00000059545)	rpz2 (ENSCCRG00000073194)	rpz (ENSCCRG00000057350)	ENSCCRG00000078456	rpz (ENSCCRG00000070641)	ENSCCRG00000060201	rpz5 (ENSCCRG00000064692)	rpz4 (ENSCCRG00000003698)	ENSCCRG00000076342	ENSCCRG00000003694	ENSCCRG00000003662	ENSCCRG00000078437	ubqln4 (ENSCCRG00000050833) #21	lamtor2 (ENSCCRG00000003428) #22	rab25b (ENSCCRG00000003390) #23	rab11al (ENSCCRG00000058461)	ENSCCRG00000064718	ENSCCRG00000047723	ENSCCRG00000076044	ENSCCRG00000082404	mios (ENSCCRG00000025187)	ENSCCRG00000058022	ENSCCRG00000081747	slc25a32b (ENSCCRG00000075919)	ENSCCRG00000078770	ENSCCRG00000064038	eif3ha (ENSCCRG00000023810)	rad21a (ENSCCRG00000024578)	ext1a (ENSCCRG00000019432)
Zebrafish	MODERN SPECIES	7	rpz2 (ENSDARG00000091215)	rpz6 (ENSDARG00000089889)	rpz3 (ENSDARG00000069728)	rpz5 (ENSDARG00000075718)	rpz4 (ENSDARG00000039871)	ENSDARG00000099491	ENSDARG00000099715	ENSDARG00000087297	zgc:174938 (ENSDARG00000075622)	ENSDARG00000105043	ENSDARG00000104134	ENSDARG00000098387	tmem176l.2 (ENSDARG00000089399)	tmem176l.4 (ENSDARG00000074390)	ubqln4 (ENSDARG00000052975) #21	lamtor2 (ENSDARG00000039872) #22	rab25b (ENSDARG00000052954) #23	rab11al (ENSDARG00000014340)	ENSDARG00000076638	ENSDARG00000109561	THSD7A (ENSDARG00000090496)	ENSDARG00000116433	ENSDARG00000098402	ICA1 (ENSDARG00000042608)	mios (ENSDARG00000102587)	col28a1b (ENSDARG00000087087)	ENSDARG00000099098	ENSDARG00000021849	septin7b (ENSDARG00000052673)	slc25a32b (ENSDARG00000026835)	CTHRC1 (ENSDARG00000001971)
Euteleosteomorpha	ANCESTRAL SPECIES	13	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000169377	ENSGT00940000159463.n.a	ENSGT00950000182844.b.b.a #37	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475
Protacanthopterygii	ANCESTRAL SPECIES	12	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000163828.a.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT01010000223409	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000169377	ENSGT00940000159463.n.a	ENSGT00950000182844.b.b.a #37	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	45	ENSGT00940000165753.c	ENSGT00940000163828.a.b.b.e	ENSGT00940000165143.a.b.o	ENSGT00390000008158.b.b.a.b.j	ENSGT00390000008158.b.a.p.a	ENSGT00390000008158.b.b.a.a.m.b.a	ENSGT00940000165143.a.a.r	ENSGT00390000008158.b.b.a.a.m.b.b	ENSGT00940000165143.a.b.p.a.b	ENSGT00390000008158.b.a.p.b	ENSGT00390000008158.b.b.a.b.i.a	ENSGT00390000008158.b.a.o.b	ENSGT00390000008158.b.b.a.a.m.a	ENSGT00510000051675.j	ENSGT00940000155620.r.a #21	ENSGT00390000006100.q #22	ENSGT00940000158230.b.a.c #23	ENSGT00940000165149.a.b.a	ENSGT00940000166523.h	ENSGT00940000157244.a.b.f #25	ENSGT00940000155333.B.c	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.b	ENSGT00940000169377.a	ENSGT00940000159463.n.a.a	ENSGT00950000182844.b.b.a.g #37	ENSGT00940000161384.f	ENSGT00940000157343.a.b.e	ENSGT00940000159724.r	ENSGT01060000250898	ENSGT00940000160475.v
Salmoninae_a	ANCESTRAL SPECIES	43	ENSGT00940000160276.h	ENSGT00950000182940.b.a.b.a.a.c	ENSGT00510000048165.f	ENSGT00940000165753.c	ENSGT00940000163828.a.b.b.e	ENSGT00390000008158.b.b.a.a.m.b.a	ENSGT00940000165143.a.a.r	ENSGT00390000008158.b.b.a.a.m.b.b	ENSGT00940000165143.a.b.p.a.b	ENSGT00390000008158.b.a.p.b	ENSGT00390000008158.b.b.a.b.i.a	ENSGT00390000008158.b.a.o.b	ENSGT00390000008158.b.b.a.a.m.a	ENSGT00510000051675.j	ENSGT00940000155620.r.a #21	ENSGT00390000006100.q #22	ENSGT00940000158230.b.a.c #23	ENSGT00940000165149.a.b.a	ENSGT00940000166523.h	ENSGT00940000157244.a.b.f #25	ENSGT00940000155333.B.c	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.b	ENSGT00940000169377.a	ENSGT00940000159463.n.a.a	ENSGT00950000182844.b.b.a.g #37	ENSGT00940000161384.f	ENSGT00940000157343.a.b.e	ENSGT00940000159724.r	ENSGT00940000160475.v	ENSGT00940000164422.o
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00940000160567.s #30	ENSGT00940000159412.c	ENSGT00760000119652.e.b	ENSGT00730000111185.eb.c	ENSGT00940000159172.g	ENSGT00940000160276.h	ENSGT00950000182940.b.a.b.a.a.c	ENSGT00510000048165.f	ENSGT00940000165753.c	ENSGT00940000163828.a.b.b.e	ENSGT00390000008158.b.a.p.b	ENSGT00390000008158.b.a.o.b	ENSGT00390000008158.b.b.a.a.m.a	ENSGT00510000051675.j	ENSGT00940000155620.r.a #21	ENSGT00390000006100.q #22	ENSGT00940000158230.b.a.c #23	ENSGT00940000165149.a.a	ENSGT00940000166523.h	ENSGT00940000157244.a.b.f #25	ENSGT00940000155333.B.c	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.b	ENSGT00940000169377.a	ENSGT00940000159463.n.a.a	ENSGT00950000182844.b.b.a.g #37	ENSGT00940000161384.f	ENSGT00940000157343.a.b.e	ENSGT00940000159724.r	ENSGT00940000160475.v	ENSGT00940000164422.o
Oncorhynchus_a	ANCESTRAL SPECIES	39	ENSGT00940000154566.e #31	ENSGT00940000160567.s #30	ENSGT00940000159412.c	ENSGT00760000119652.e.b	ENSGT00730000111185.eb.c	ENSGT00940000159172.g	ENSGT00940000160276.h	ENSGT00950000182940.b.a.b.a.a.c	ENSGT00510000048165.f	ENSGT00940000165753.c	ENSGT00940000163828.a.b.b.e	ENSGT00390000008158.b.a.o.b	ENSGT00390000008158.b.b.a.a.m.a	ENSGT00510000051675.j	ENSGT00940000155620.r.a #21	ENSGT00390000006100.q #22	ENSGT00940000158230.b.a.c #23	ENSGT00940000165149.a.a	ENSGT00940000166523.h	ENSGT00940000157244.a.b.f #25	ENSGT00940000155333.B.c	ENSGT00390000008765	ENSGT01100000263776	ENSGT00940000169377.a	ENSGT00940000159463.n.a.a	ENSGT00950000182844.b.b.a.g #37	ENSGT00940000161384.f	ENSGT00940000157343.a.b.e	ENSGT00940000159724.r	ENSGT00940000160475.v	ENSGT00940000164422.o
Chinook salmon	MODERN SPECIES	22	smg5 (ENSOTSG00005007486) #31	PAQR6 (ENSOTSG00005007482) #30	ntrk1 (ENSOTSG00005007479)	ENSOTSG00005007475	rbm8a (ENSOTSG00005007474)	otud7b (ENSOTSG00005007467)	mtmr11 (ENSOTSG00005007464)	SV2A (ENSOTSG00005007461)	bola1 (ENSOTSG00005007451)	nr2f5 (ENSOTSG00005007449)	ENSOTSG00005007448	rpz5 (ENSOTSG00005007437)	rpz4 (ENSOTSG00005007436)	ENSOTSG00005007435	ubqln4 (ENSOTSG00005007285) #21	lamtor2 (ENSOTSG00005007283) #22	rab25b (ENSOTSG00005007282) #23	rab11al (ENSOTSG00005007281)	ENSOTSG00005007279	lmna (ENSOTSG00005007274) #25	ENSOTSG00005007264	gpatch4 (ENSOTSG00005007261)	ENSOTSG00005007260	ENSOTSG00005007259	mef2d (ENSOTSG00005007247)	rhbg (ENSOTSG00005007243) #37	hapln2 (ENSOTSG00005007242)	bcan (ENSOTSG00005007240)	ENSOTSG00005007239	ENSOTSG00005007238	ENSOTSG00005007237
Coho salmon	MODERN SPECIES	11	smg5 (ENSOKIG00005024109) #31	PAQR6 (ENSOKIG00005024083) #30	ntrk1 (ENSOKIG00005024065)	ENSOKIG00005024041	rbm8a (ENSOKIG00005024006)	otud7b (ENSOKIG00005023961)	mtmr11 (ENSOKIG00005023835)	SV2A (ENSOKIG00005023756)	ENSOKIG00005023731	nr2f5 (ENSOKIG00005023713)	ENSOKIG00005023704	rpz5 (ENSOKIG00005023668)	rpz4 (ENSOKIG00005023664)	ENSOKIG00005023658	ubqln4 (ENSOKIG00005023638) #21	lamtor2 (ENSOKIG00005023629) #22	rab25b (ENSOKIG00005023603) #23	rab11al (ENSOKIG00005023587)	ENSOKIG00005023573	lmna (ENSOKIG00005023461) #25	ENSOKIG00005023438	gpatch4 (ENSOKIG00005023436)	ENSOKIG00005023417	ENSOKIG00005023408	mef2d (ENSOKIG00005022803)	rhbg (ENSOKIG00005022587) #37	hapln2 (ENSOKIG00005022561)	bcan (ENSOKIG00005022519)	ENSOKIG00005022485	s100a1 (ENSOKIG00005022371)	tlr18 (ENSOKIG00005022358)
Rainbow trout	MODERN SPECIES	21	rbm8a (ENSOMYG00000004925)	otud7b (ENSOMYG00000004904)	mtmr11 (ENSOMYG00000004861)	SV2A (ENSOMYG00000004803)	bola1 (ENSOMYG00000069669)	nr2f5 (ENSOMYG00000004772)	ENSOMYG00000004744	rpz5 (ENSOMYG00000074204)	ENSOMYG00000071196	rpz5 (ENSOMYG00000051983)	ENSOMYG00000004495	rpz5 (ENSOMYG00000004462)	ENSOMYG00000056361	ENSOMYG00000004411	ubqln4 (ENSOMYG00000004399) #21	mapip (ENSOMYG00000004275) #22	rab25b (ENSOMYG00000004235) #23	rab11al (ENSOMYG00000004208)	ENSOMYG00000004104	LMNA (ENSOMYG00000003999) #25	ENSOMYG00000012115	gpatch4 (ENSOMYG00000012087)	ENSOMYG00000058094	ENSOMYG00000075763	mef2d (ENSOMYG00000012051)	rhgb (ENSOMYG00000011958) #37	ENSOMYG00000008765	hapln2 (ENSOMYG00000011931)	ENSOMYG00000059370	bcan (ENSOMYG00000011889)	ENSOMYG00000011874
Salmo	ANCESTRAL SPECIES	32	ENSGT00940000163828.a.b.b.e	ENSGT00940000165143.a.a.q.c	ENSGT00390000008158.b.a.p.a	ENSGT00940000165143.a.b.o	ENSGT00390000008158.b.b.a.b.j	ENSGT00390000008158.b.b.a.a.m.b.a	ENSGT00940000165143.a.a.r	ENSGT00390000008158.b.b.a.a.m.b.b	ENSGT00940000165143.a.b.p.a.b	ENSGT00390000008158.b.a.p.b	ENSGT00390000008158.b.b.a.b.i.a	ENSGT00390000008158.b.a.o.b	ENSGT00390000008158.b.b.a.a.m.a	ENSGT00510000051675.j	ENSGT00940000155620.r.a #21	ENSGT00390000006100.q #22	ENSGT00940000158230.b.a.c #23	ENSGT00940000165149.a.b.a	ENSGT00940000166523.h	ENSGT00940000157244.a.b.f #25	ENSGT00940000155333.B.c	ENSGT00390000008765.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.b	ENSGT00940000169377.a	ENSGT00940000159463.n.a.a	ENSGT00950000182844.b.b.a.g #37	ENSGT00940000161384.f	ENSGT00940000157343.a.b.e	ENSGT00940000159724.r	ENSGT00940000160475.v	ENSGT00940000164422.o
River trout	MODERN SPECIES	30	SV2A (ENSSTUG00000038754)	bola1 (ENSSTUG00000038739)	nr2f5 (ENSSTUG00000038732)	ENSSTUG00000038687	rpz (ENSSTUG00000038673)	rpz5 (ENSSTUG00000038663)	ENSSTUG00000038661	rpz4 (ENSSTUG00000038619)	rpz (ENSSTUG00000038608)	rpz4 (ENSSTUG00000038603)	rpz5 (ENSSTUG00000038579)	rpz5 (ENSSTUG00000038575)	rpz4 (ENSSTUG00000038571)	ENSSTUG00000038569	ubqln4 (ENSSTUG00000038433) #21	lamtor2 (ENSSTUG00000038406) #22	rab25b (ENSSTUG00000038376) #23	rab11al (ENSSTUG00000048664)	ENSSTUG00000048661	lmna (ENSSTUG00000048655) #25	ENSSTUG00000048635	gpatch4 (ENSSTUG00000048633)	ENSSTUG00000048630	ENSSTUG00000048626	mef2d (ENSSTUG00000048594)	ENSSTUG00000048585	rhbg (ENSSTUG00000048552) #37	ENSSTUG00000048545	hapln2 (ENSSTUG00000048534)	bcan (ENSSTUG00000048524)	ENSSTUG00000048518
Huchen	MODERN SPECIES	47								rpz (ENSHHUG00000018680)	rpz4 (ENSHHUG00000018676)	ENSHHUG00000018665	rpz5 (ENSHHUG00000018662)	rpz4 (ENSHHUG00000018657)	ENSHHUG00000018645	ENSHHUG00000018642	ubqln4 (ENSHHUG00000018630) #21	lamtor2 (ENSHHUG00000018590) #22	rab25b (ENSHHUG00000018572) #23	rab11al (ENSHHUG00000018430)	ENSHHUG00000018426	lmna (ENSHHUG00000018377) #25	ENSHHUG00000018347	gpatch4 (ENSHHUG00000018339)	ENSHHUG00000018334	ENSHHUG00000018329	mef2d (ENSHHUG00000018194)	rhbg (ENSHHUG00000018089) #37	hapln2 (ENSHHUG00000018086)	ENSHHUG00000018073	ENSHHUG00000018056	ENSHHUG00000018039	mettl25b (ENSHHUG00000017971)
Salmoninae	ANCESTRAL SPECIES	27	ENSGT00940000159172.h	ENSGT00940000160276.g	ENSGT00950000182940.b.a.b.a.a.d	ENSGT00510000048165.e	ENSGT00940000165753.d	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a	ENSGT00940000165143.a.a.q	ENSGT00390000008158.b.b.a.b.i.b	ENSGT00390000008158.b.a.o.a	ENSGT00390000008158.b.b.a.a.n	ENSGT01010000223409	ENSGT00510000051675.i	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r.b #21	ENSGT00390000006100.r #22	ENSGT00940000158230.b.a.d #23	ENSGT00940000165149.a.b.b	ENSGT00940000166523.g	ENSGT00940000157244.a.b.e #25	ENSGT00940000155333.B.d	ENSGT01030000234575.c.a.a.a.a.a.b.b.c	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.a	ENSGT00940000169377.b	ENSGT00940000159463.n.a.b	ENSGT00950000182844.b.b.a.h #37	ENSGT00940000161384.e	ENSGT00940000157343.a.b.f	ENSGT00940000159724.q	ENSGT00530000063745.a	ENSGT00940000160475.u
Huchen	MODERN SPECIES	208										ENSHHUG00000042114	rpz5 (ENSHHUG00000042117)	rpz4 (ENSHHUG00000042118)	ENSHHUG00000042119	zgc:174938 (ENSHHUG00000042151)	ubqln4 (ENSHHUG00000042159) #21	lamtor2 (ENSHHUG00000042170) #22	rab25b (ENSHHUG00000042194) #23	rab11al (ENSHHUG00000042219)	ENSHHUG00000042257	lmna (ENSHHUG00000042268) #25	ENSHHUG00000042292	ENSHHUG00000042395	ENSHHUG00000042410	ENSHHUG00000042431	mef2d (ENSHHUG00000042439)	rhbg (ENSHHUG00000042527) #37	hapln2 (ENSHHUG00000042670)	bcan (ENSHHUG00000042677)	ISG20L2 (ENSHHUG00000042688)	mettl25b (ENSHHUG00000042694)	s100a1 (ENSHHUG00000042705)
Salmoninae_a	ANCESTRAL SPECIES	39	ENSGT00940000159172.h	ENSGT00940000160276.g	ENSGT00950000182940.b.a.b.a.a.d	ENSGT00510000048165.e	ENSGT00940000165753.d	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a	ENSGT00940000165143.a.a.q	ENSGT00390000008158.b.b.a.b.i.b	ENSGT00390000008158.b.a.o.a	ENSGT00390000008158.b.b.a.a.n	ENSGT01010000223409	ENSGT00510000051675.i	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r.b #21	ENSGT00390000006100.r #22	ENSGT00940000158230.b.a.d #23	ENSGT00940000165149.a.b.b	ENSGT00940000166523.g	ENSGT00940000157244.a.b.e #25	ENSGT00940000155333.B.d	ENSGT01030000234575.c.a.a.a.a.a.b.b.c	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.a	ENSGT00940000169377.b	ENSGT00940000159463.n.a.b	ENSGT00950000182844.b.b.a.h #37	ENSGT00940000161384.e	ENSGT00940000157343.a.b.f	ENSGT00940000159724.q	ENSGT00530000063745.a	ENSGT00940000160475.u
Oncorhynchus	ANCESTRAL SPECIES	38	ENSGT00730000111185.eb.d	ENSGT00940000159172.h	ENSGT00940000160276.g	ENSGT00950000182940.b.a.b.a.a.d	ENSGT00510000048165.e	ENSGT00940000165753.d	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a	ENSGT00940000165143.a.a.q	ENSGT00390000008158.b.b.a.b.i.b	ENSGT00390000008158.b.a.o.a	ENSGT00390000008158.b.b.a.a.n	ENSGT00510000051675.i.f	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r.b #21	ENSGT00390000006100.r #22	ENSGT00940000158230.b.a.d #23	ENSGT00940000165149.a.b.b	ENSGT00940000166523.g	ENSGT00940000157244.a.b.e #25	ENSGT00940000155333.B.d	ENSGT01030000234575.c.a.a.a.a.a.b.b.c	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.a	ENSGT00940000169377.b	ENSGT00940000159463.n.a.b	ENSGT00950000182844.b.b.a.h #37	ENSGT00940000161384.e	ENSGT00940000157343.a.b.f	ENSGT00940000159724.q	ENSGT00530000063745.a	ENSGT00940000160475.u
Oncorhynchus_a	ANCESTRAL SPECIES	26	ENSGT00950000182940.b.a.b.a.a.d	ENSGT00510000048165.e	ENSGT00940000165753.d	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a	ENSGT00940000165143.a.a.q	ENSGT00390000008158.b.b.a.b.i.b	ENSGT00390000008158.b.a.o.a	ENSGT00390000008158.b.b.a.a.n	ENSGT01010000223409	ENSGT00510000051675.i.e	ENSGT01000000219592	ENSGT00390000010118.c.a.a	ENSGT00510000051675.i.f	ENSGT00940000155620.r.b #21	ENSGT00390000006100.r #22	ENSGT00940000158230.b.a.d #23	ENSGT00940000165149.a.b.b	ENSGT00940000166523.g	ENSGT00940000157244.a.b.e #25	ENSGT00940000155333.B.d	ENSGT01030000234575.c.a.a.a.a.a.b.b.c	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.a	ENSGT00940000169377.b	ENSGT00940000159463.n.a.b	ENSGT00950000182844.b.b.a.h #37	ENSGT00940000161384.e	ENSGT00940000157343.a.b.f	ENSGT00940000159724.q	ENSGT00530000063745.a	ENSGT00940000160475.u
Coho salmon	MODERN SPECIES	4	mtmr11 (ENSOKIG00005028972)	SV2A (ENSOKIG00005029023)	bola1 (ENSOKIG00005029249)	nr2f5 (ENSOKIG00005029260)	ENSOKIG00005020393	ENSOKIG00005020405	rpz (ENSOKIG00005020414)	rpz6 (ENSOKIG00005020418)	rpz5 (ENSOKIG00005020423)	rpz4 (ENSOKIG00005020427)	ENSOKIG00005020432	ENSOKIG00005020447	zgc:174938 (ENSOKIG00005020454)	ENSOKIG00005020464	ubqln4 (ENSOKIG00005020486) #21	lamtor2 (ENSOKIG00005020878) #22	rab25b (ENSOKIG00005020905) #23	rab11al (ENSOKIG00005020937)	ENSOKIG00005021034	LMNA (ENSOKIG00005021075) #25	ENSOKIG00005021172	ENSOKIG00005021202	ENSOKIG00005021215	ENSOKIG00005021230	mef2d (ENSOKIG00005021265)	ENSOKIG00005021339	rhbg (ENSOKIG00005021364) #37	hapln2 (ENSOKIG00005021474)	bcan (ENSOKIG00005021491)	ISG20L2 (ENSOKIG00005021512)	mettl25b (ENSOKIG00005021554)
Chinook salmon	MODERN SPECIES	15	mtmr11 (ENSOTSG00005016072)	bola1 (ENSOTSG00005016067)	nr2f5 (ENSOTSG00005016066)	ENSOTSG00005016032	ENSOTSG00005016214	rpz (ENSOTSG00005016213)	ENSOTSG00005016211	ENSOTSG00005016210	ENSOTSG00005016209	rpz5 (ENSOTSG00005016208)	rpz4 (ENSOTSG00005016207)	ENSOTSG00005016206	ENSOTSG00005016205	ENSOTSG00005016204	ubqln4 (ENSOTSG00005016076) #21	lamtor2 (ENSOTSG00005016073) #22	rab25b (ENSOTSG00005016070) #23	ENSOTSG00005016068	ENSOTSG00005016065	lmna (ENSOTSG00005015898) #25	ENSOTSG00005015895	ENSOTSG00005015894	ENSOTSG00005015893	ENSOTSG00005015892	mef2d (ENSOTSG00005015866)	rhbg (ENSOTSG00005015808) #37	hapln2 (ENSOTSG00005015807)	bcan (ENSOTSG00005015805)	ENSOTSG00005015803	mettl25b (ENSOTSG00005015802)	s100a1 (ENSOTSG00005015801)
Rainbow trout	MODERN SPECIES	11	mtmr11 (ENSOMYG00000001182)	SV2A (ENSOMYG00000001165)	bola1 (ENSOMYG00000001141)	nr2f5 (ENSOMYG00000001131)	ENSOMYG00000001121	ENSOMYG00000001086	rpz (ENSOMYG00000077708)	rpz6 (ENSOMYG00000001075)	ENSOMYG00000069366	rpz5 (ENSOMYG00000001071)	rpz4 (ENSOMYG00000001065)	ENSOMYG00000057262	zgc:174938 (ENSOMYG00000000981)	ENSOMYG00000049461	ubqln4 (ENSOMYG00000000958) #21	lamtor2 (ENSOMYG00000000922) #22	rab25b (ENSOMYG00000000916) #23	rab11al (ENSOMYG00000000878)	ENSOMYG00000000827	LMNA (ENSOMYG00000000818) #25	ENSOMYG00000000754	ENSOMYG00000061602	ENSOMYG00000000628	ENSOMYG00000000615	mef2d (ENSOMYG00000000599)	ENSOMYG00000051267	rhbg2a (ENSOMYG00000000559) #37	hapln2 (ENSOMYG00000000450)	ENSOMYG00000050334	bcan (ENSOMYG00000000429)	ENSOMYG00000000411
Salmo	ANCESTRAL SPECIES	1	ENSGT00730000111185.eb.d	ENSGT00940000159172.h	ENSGT00940000160276.g	ENSGT00950000182940.b.a.b.a.a.d	ENSGT00510000048165.e	ENSGT00940000165753.d	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a	ENSGT00940000165143.a.a.q.d	ENSGT00390000008158.b.b.a.b.i.b.b	ENSGT00390000008158.b.a.o.a	ENSGT00390000008158.b.b.a.a.n	ENSGT00510000051675.i	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r.b #21	ENSGT00390000006100.r #22	ENSGT00940000158230.b.a.d #23	ENSGT00940000165149.a.b.b	ENSGT00940000166523.g	ENSGT00940000157244.a.b.e #25	ENSGT00940000155333.B.d	ENSGT00390000008765.l	ENSGT01030000234575.c.a.a.a.a.a.b.b.c	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.a	ENSGT00940000169377.b	ENSGT00940000159463.n.a.b	ENSGT00950000182844.b.b.a.h #37	ENSGT00940000161384.e	ENSGT00940000157343.a.b.f	ENSGT00940000159724.q	ENSGT00530000063745.a
River trout	MODERN SPECIES	22	ENSSTUG00000037480	rbm8a (ENSSTUG00000037492)	ENSSTUG00000037511	otud7b (ENSSTUG00000037519)	mtmr11 (ENSSTUG00000037559)	SV2A (ENSSTUG00000037605)	bola1 (ENSSTUG00000038021)	nr2f5 (ENSSTUG00000038025)	ENSSTUG00000038041	rpz (ENSSTUG00000038080)	rpz6 (ENSSTUG00000038082)	rpz5 (ENSSTUG00000038084)	ENSSTUG00000038103	zgc:174938 (ENSSTUG00000038170)	ubqln4 (ENSSTUG00000038189) #21	lamtor2 (ENSSTUG00000038524) #22	rab25b (ENSSTUG00000038546) #23	rab11al (ENSSTUG00000038614)	ENSSTUG00000038657	lmna (ENSSTUG00000038669) #25	ENSSTUG00000038776	gpatch4 (ENSSTUG00000038813)	ENSSTUG00000038824	ENSSTUG00000038827	ENSSTUG00000038838	mef2d (ENSSTUG00000038857)	rhbg (ENSSTUG00000039002) #37	hapln2 (ENSSTUG00000039038)	bcan (ENSSTUG00000039054)	ISG20L2 (ENSSTUG00000039091)	mettl25b (ENSSTUG00000039094)
Atlantic salmon	MODERN SPECIES	24	rpz (ENSSSAG00000091955)	ENSSSAG00000072291	ENSSSAG00000116173	ENSSSAG00000008179	rpz5 (ENSSSAG00000121454)	ENSSSAG00000121934	rpz4 (ENSSSAG00000092151)	ENSSSAG00000008196	ENSSSAG00000120565	M4A8A (ENSSSAG00000010511)	ENSSSAG00000118258	ENSSSAG00000119551	m4a8a (ENSSSAG00000060046)	ENSSSAG00000089912	ubqln4 (ENSSSAG00000096486) #21	lamtor2 (ENSSSAG00000008231) #22	rab25b (ENSSSAG00000008244) #23	rab11al (ENSSSAG00000008269)	ENSSSAG00000008307	ENSSSAG00000009866	LMNA (ENSSSAG00000008349) #25	ENSSSAG00000110312	ENSSSAG00000009893	ENSSSAG00000009900	ENSSSAG00000094384	mef2d (ENSSSAG00000009931)	rhbg (ENSSSAG00000009992) #37	hapln2 (ENSSSAG00000071090)	bcan (ENSSSAG00000010213)	ISG20L2 (ENSSSAG00000010247)	mettl25b (ENSSSAG00000010251)
Northern pike	MODERN SPECIES	19	otud7b (ENSELUG00000000461)	mtmr11 (ENSELUG00000012368)	ENSELUG00000012315	SV2A (ENSELUG00000001522)	bola1 (ENSELUG00000012263)	nr2f5 (ENSELUG00000012245)	ENSELUG00000012232	ENSELUG00000027498	rpz (ENSELUG00000000452)	rpz6 (ENSELUG00000012205)	rpz5 (ENSELUG00000012198)	rpz5 (ENSELUG00000012177)	rpz4 (ENSELUG00000012173)	tmem176l.2 (ENSELUG00000012170)	ubqln4 (ENSELUG00000012144) #21	lamtor2 (ENSELUG00000012106) #22	rab25b (ENSELUG00000012060) #23	rab11al (ENSELUG00000012035)	ENSELUG00000012012	lmna (ENSELUG00000011994) #25	ENSELUG00000011947	gpatch4 (ENSELUG00000034114)	ENSELUG00000011875	ENSELUG00000033555	ENSELUG00000026589	ENSELUG00000029443	ENSELUG00000011842	mef2d (ENSELUG00000011795)	rhbg (ENSELUG00000011736) #37	hapln2 (ENSELUG00000011692)	bcan (ENSELUG00000000422)
Acanthomorphata	ANCESTRAL SPECIES	34	ENSGT00940000158438.n	ENSGT00940000154566 #31	ENSGT00940000160567 #30	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a
Cod	MODERN SPECIES	2	ENSGMOG00000022292 #18	ENSGMOG00000015385 #32	ENSGMOG00000034456	ENSGMOG00000002963	ENSGMOG00000015429	ENSGMOG00000015587	ENSGMOG00000015606	ENSGMOG00000018513	ENSGMOG00000034614	ENSGMOG00000018543	ENSGMOG00000018601	ENSGMOG00000018606	ENSGMOG00000007686	tmem176l.4 (ENSGMOG00000007682)	zgc:174938 (ENSGMOG00000006435)	lamtor2 (ENSGMOG00000006440) #22	rab25b (ENSGMOG00000006444) #23	rab11al (ENSGMOG00000006450)	ENSGMOG00000029153	LMNA (ENSGMOG00000006470) #25	ENSGMOG00000006483	ENSGMOG00000023690	ENSGMOG00000037035	bag6 (ENSGMOG00000013765)	ENSGMOG00000023903	ENSGMOG00000025015	tnfb (ENSGMOG00000013963)	ENSGMOG00000033726	sh3bp5la (ENSGMOG00000026786)	mgat1a (ENSGMOG00000009234)	rnf183 (ENSGMOG00000027546)
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00940000181991	ENSGT00550000075030	ENSGT00940000169242	ENSGT00990000205959	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Pinecone sodierfish	MODERN SPECIES	7	nr2f5 (ENSMMDG00005003152)	ENSMMDG00005003131	rpz (ENSMMDG00005003122)	ENSMMDG00005003118	ENSMMDG00005003117	rpz5 (ENSMMDG00005003114)	rpz4 (ENSMMDG00005003112)	ENSMMDG00005003108	rpz (ENSMMDG00005003104)	ENSMMDG00005003102	rpz (ENSMMDG00005003100)	ENSMMDG00005003094	ENSMMDG00005003085	zgc:174938 (ENSMMDG00005003081)	ubqln4 (ENSMMDG00005003068) #21	lamtor2 (ENSMMDG00005003058) #22	rab25b (ENSMMDG00005003050) #23	rab11al (ENSMMDG00005003043)	ENSMMDG00005003040	lmna (ENSMMDG00005003027) #25	ENSMMDG00005002812	gpatch4 (ENSMMDG00005002789)	ENSMMDG00005002779	ENSMMDG00005002766	tspan13a (ENSMMDG00005002755)	bag6 (ENSMMDG00005002697)	glrx3 (ENSMMDG00005002672)	ENSMMDG00005002662	ENSMMDG00005002651	tnfb (ENSMMDG00005002511)	GABBR1 (ENSMMDG00005002394)
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00940000181991	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Tiger tail seahorse	MODERN SPECIES	276	ENSHCOG00000000693	ENSHCOG00000007573	SNX27 (ENSHCOG00000007557)	ENSHCOG00000007531	adar (ENSHCOG00000007480)	ENSHCOG00000007469	ENSHCOG00000007456	rab13 (ENSHCOG00000007440)	ENSHCOG00000007316	fdps (ENSHCOG00000007300)	ENSHCOG00000007269	ENSHCOG00000007261	dap3 (ENSHCOG00000007242) #12	GBA1 (ENSHCOG00000007223)	rnf115a (ENSHCOG00000007208)	lamtor2 (ENSHCOG00000007197) #22	rab25b (ENSHCOG00000007187) #23	rab11al (ENSHCOG00000000232)	ENSHCOG00000007164	lmna (ENSHCOG00000007151) #25	ENSHCOG00000007132	gpatch4 (ENSHCOG00000007016)	ENSHCOG00000006996	tspan13a (ENSHCOG00000006990)	bag6 (ENSHCOG00000006980)	glrx3 (ENSHCOG00000006958)	ENSHCOG00000000206	tnfb (ENSHCOG00000006938)	GABBR1 (ENSHCOG00000006927)	ENSHCOG00000006882	sh3bp5la (ENSHCOG00000006830)
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00940000181991	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.c.a	ENSGT00510000051675.h.a	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT01100000264191	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00940000164178.s.b	ENSGT00510000051675.g.d	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT01100000264191	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT01100000264191	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT01100000264191	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Haplochromini_A	ANCESTRAL SPECIES	27	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.b	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT01100000264191	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00940000165753	ENSGT00940000170682	ENSGT00940000167095.B	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.b	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT01100000264191	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Zebra mbuna	MODERN SPECIES	1093			ENSMZEG00005017650	ENSMZEG00005017642	pogzb (ENSMZEG00005017633)	selenbp1 (ENSMZEG00005017617)	ENSMZEG00005017611	ENSMZEG00005017604	ENSMZEG00005017597	ENSMZEG00005017591	ENSMZEG00005017582	ENSMZEG00005017580	ENSMZEG00005017568	ENSMZEG00005017537	zgc:174938 (ENSMZEG00005017527)	lamtor2 (ENSMZEG00005017526) #22	rab25b (ENSMZEG00005017522) #23	rab11al (ENSMZEG00005017514)	ENSMZEG00005017507	lmna (ENSMZEG00005017491) #25	ENSMZEG00005017469	gpatch4 (ENSMZEG00005017452)	ENSMZEG00005017441	ENSMZEG00005017437	tspan13a (ENSMZEG00005017429)	bag6 (ENSMZEG00005017413)	glrx3 (ENSMZEG00005017408)	ENSMZEG00005017397	ENSMZEG00005017394	tnfb (ENSMZEG00005017389)	GABBR1 (ENSMZEG00005017378)
Eastern happy	MODERN SPECIES	2	bola1 (ENSACLG00000009710)	nr2f5 (ENSACLG00000009719)	ENSACLG00000009726	ENSACLG00000009737	rpz (ENSACLG00000009741)	rpz6 (ENSACLG00000009746)	rpz5 (ENSACLG00000009751)	rpz4 (ENSACLG00000009754)	ENSACLG00000009764	ENSACLG00000010177	ENSACLG00000010200	ENSACLG00000010211	ENSACLG00000010218	ENSACLG00000010229	zgc:174938 (ENSACLG00000010243)	lamtor2 (ENSACLG00000010245) #22	rab25b (ENSACLG00000010251) #23	rab11al (ENSACLG00000010268)	ENSACLG00000010278	lmna (ENSACLG00000010359) #25	ENSACLG00000010393	gpatch4 (ENSACLG00000010456)	ENSACLG00000010509	ENSACLG00000010519	tspan13a (ENSACLG00000010530)	bag6 (ENSACLG00000010554)	glrx3 (ENSACLG00000010585)	ENSACLG00000010600	ENSACLG00000010614	tnfb (ENSACLG00000010621)	GABBR1 (ENSACLG00000010781)
P. nyererei	MODERN SPECIES	588										ENSPNYG00000018034	ENSPNYG00000018066	ENSPNYG00000018106	ENSPNYG00000018119	ENSPNYG00000018154	zgc:174938 (ENSPNYG00000018177)	lamtor2 (ENSPNYG00000018197) #22	rab25b (ENSPNYG00000018214) #23	rab11al (ENSPNYG00000018244)	ENSPNYG00000018270	lmna (ENSPNYG00000018288) #25	ENSPNYG00000018351	gpatch4 (ENSPNYG00000018461)	ENSPNYG00000018521	tspan13a (ENSPNYG00000018549)	bag6 (ENSPNYG00000018572)	glrx3 (ENSPNYG00000018588)	ENSPNYG00000018609	ENSPNYG00000018635	tnfb (ENSPNYG00000018642)	GABBR1 (ENSPNYG00000018663)	sh3bp5la (ENSPNYG00000018707)
Burton s mouthbrooder	MODERN SPECIES	327	nr2f5 (ENSHBUG00000009044)	ENSHBUG00000009063	ENSHBUG00000009075	rpz (ENSHBUG00000009083)	rpz6 (ENSHBUG00000009089)	rpz5 (ENSHBUG00000009100)	rpz4 (ENSHBUG00000009111)	ENSHBUG00000009120	ENSHBUG00000000231	ENSHBUG00000009212	ENSHBUG00000009223	ENSHBUG00000009235	ENSHBUG00000009248	ENSHBUG00000009259	zgc:174938 (ENSHBUG00000009267)	lamtor2 (ENSHBUG00000009286) #22	rab25b (ENSHBUG00000009320) #23	rab11al (ENSHBUG00000009333)	ENSHBUG00000009342	lmna (ENSHBUG00000009419) #25	ENSHBUG00000009589	gpatch4 (ENSHBUG00000009675)	ENSHBUG00000009684	ENSHBUG00000009694	tspan13a (ENSHBUG00000009721)	bag6 (ENSHBUG00000009738)	ENSHBUG00000009753	ENSHBUG00000009763	tnfb (ENSHBUG00000009771)	GABBR1 (ENSHBUG00000009828)	ENSHBUG00000009836
Lyretail cichlid	MODERN SPECIES	373	ntrk1 (ENSNBRG00000004429)	rbm8a (ENSNBRG00000004541)	otud7b (ENSNBRG00000004572)	mtmr11 (ENSNBRG00000004613)	SV2A (ENSNBRG00000004684)	bola1 (ENSNBRG00000004852)	ENSNBRG00000004874	rpz (ENSNBRG00000004907)	rpz6 (ENSNBRG00000004913)	rpz5 (ENSNBRG00000004927)	rpz4 (ENSNBRG00000004938)	ENSNBRG00000004948	ENSNBRG00000005005	ENSNBRG00000005029	zgc:174938 (ENSNBRG00000005060)	lamtor2 (ENSNBRG00000005083) #22	rab25b (ENSNBRG00000005097) #23	rab11al (ENSNBRG00000005116)	ENSNBRG00000005141	LMNA (ENSNBRG00000005177) #25	ENSNBRG00000005276	ENSNBRG00000005385	tspan13a (ENSNBRG00000005407)	ENSNBRG00000005433	glrx3 (ENSNBRG00000005445)	ENSNBRG00000005466	tnfb (ENSNBRG00000005485)	GABBR1 (ENSNBRG00000005506)	sh3bp5la (ENSNBRG00000005556)	mgat1a (ENSNBRG00000005572)	rnf183 (ENSNBRG00000005595)
Nile tilapia	MODERN SPECIES	2	mtx1a (ENSONIG00000002166)	thbs3a (ENSONIG00000002170)	hjv (ENSONIG00000002186)	ENSONIG00000002298	ENSONIG00000032560	ENSONIG00000002296	ENSONIG00000040641	ENSONIG00000038901	ENSONIG00000019993	ENSONIG00000027125	ENSONIG00000002291	ENSONIG00000035785	ENSONIG00000002289	ENSONIG00000037024	zgc:174938 (ENSONIG00000002286)	lamtor2 (ENSONIG00000002285) #22	rab25b (ENSONIG00000002284) #23	rab11al (ENSONIG00000002281)	ENSONIG00000002279	lmna (ENSONIG00000002271) #25	ENSONIG00000002264	gpatch4 (ENSONIG00000030651)	ENSONIG00000002260	ENSONIG00000002258	tspan13a (ENSONIG00000002257)	bag6 (ENSONIG00000002253)	glrx3 (ENSONIG00000020845)	ENSONIG00000042885	ENSONIG00000034719	tnfb (ENSONIG00000002250)	GABBR1 (ENSONIG00000002243)
Midas cichlid	MODERN SPECIES	872	ENSACIG00000017642	mtmr11 (ENSACIG00000017613)	SV2A (ENSACIG00000017594)	bola1 (ENSACIG00000017566)	nr2f5 (ENSACIG00000017556)	ENSACIG00000017542	rpz (ENSACIG00000017536)	rpz6 (ENSACIG00000017530)	rpz5 (ENSACIG00000017523)	ENSACIG00000017516	rpz4 (ENSACIG00000017512)	ENSACIG00000017497	ENSACIG00000017475	ENSACIG00000017450	zgc:174938 (ENSACIG00000017433)	lamtor2 (ENSACIG00000017426) #22	rab25b (ENSACIG00000017414) #23	rab11al (ENSACIG00000017403)	ENSACIG00000017394	lmna (ENSACIG00000017374) #25	ENSACIG00000017333	ENSACIG00000017309
Pomacentridae	ANCESTRAL SPECIES	25	ENSGT00950000182919.B.a.g	ENSGT00960000186737	ENSGT00940000164898.d	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00950000182919.B.a.g	ENSGT00960000186737	ENSGT00940000164898.d	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00940000177379	ENSGT01100000263761	ENSGT00940000164898.d	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.g.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Clown anemonefish	MODERN SPECIES	1684	ENSAOCG00000016051	ENSAOCG00000001103	pycard (ENSAOCG00000016034)	etsrp (ENSAOCG00000016019)	fli1rs (ENSAOCG00000015988)	zp3d.2 (ENSAOCG00000015941)	ENSAOCG00000015931	ENSAOCG00000015915	rpz (ENSAOCG00000015876)	rpz6 (ENSAOCG00000015859)	rpz5 (ENSAOCG00000002458)	rpz4 (ENSAOCG00000015835)	ENSAOCG00000001096	ENSAOCG00000015765	zgc:174938 (ENSAOCG00000015745)	lamtor2 (ENSAOCG00000015735) #22	rab25b (ENSAOCG00000015713) #23	rab11al (ENSAOCG00000015678)	ENSAOCG00000015646	lmna (ENSAOCG00000015626) #25	ENSAOCG00000001078	gpatch4 (ENSAOCG00000015494)	ENSAOCG00000015459	ENSAOCG00000015442	tspan13a (ENSAOCG00000015420)
Orange clownfish	MODERN SPECIES	21	ENSAPEG00000021800	ENSAPEG00000021854	ENSAPEG00000021857	pycard (ENSAPEG00000021864)	etsrp (ENSAPEG00000021871)	fli1rs (ENSAPEG00000021912)	ENSAPEG00000021949	ENSAPEG00000021957	rpz (ENSAPEG00000021978)	rpz6 (ENSAPEG00000021984)	rpz5 (ENSAPEG00000021996)	rpz4 (ENSAPEG00000022000)	ENSAPEG00000022010	ENSAPEG00000022040	zgc:174938 (ENSAPEG00000022068)	lamtor2 (ENSAPEG00000022080) #22	rab25b (ENSAPEG00000022106) #23	rab11al (ENSAPEG00000022135)	ENSAPEG00000022160	lmna (ENSAPEG00000022176) #25	ENSAPEG00000022213	gpatch4 (ENSAPEG00000022243)	ENSAPEG00000022257	ENSAPEG00000022274	tspan13a (ENSAPEG00000022280)	bag6 (ENSAPEG00000022296)	glrx3 (ENSAPEG00000022313)	ENSAPEG00000022323	ENSAPEG00000022341	ENSAPEG00000022349	tnfb (ENSAPEG00000022358)
Spiny chromis	MODERN SPECIES	356															zgc:174938 (ENSAPOG00000008162)	lamtor2 (ENSAPOG00000008180) #22	rab25b (ENSAPOG00000008216) #23	rab11al (ENSAPOG00000008251)	ENSAPOG00000008262	lmna (ENSAPOG00000008317) #25	ENSAPOG00000008403	gpatch4 (ENSAPOG00000008436)	ENSAPOG00000008444	ENSAPOG00000008476	tspan13a (ENSAPOG00000008502)	bag6 (ENSAPOG00000008519)	glrx3 (ENSAPOG00000008544)	ENSAPOG00000008558	ENSAPOG00000008580	tnfb (ENSAPOG00000008608)	GABBR1 (ENSAPOG00000008685)
Bicolor damselfish	MODERN SPECIES	805									rpz4 (ENSSPAG00000012244)	ENSSPAG00000012224	ENSSPAG00000012152	ENSSPAG00000012136	ENSSPAG00000012106	ENSSPAG00000012102	zgc:174938 (ENSSPAG00000012087)	lamtor2 (ENSSPAG00000012076) #22	rab25b (ENSSPAG00000012060) #23	rab11al (ENSSPAG00000012044)	ENSSPAG00000012030	lmna (ENSSPAG00000011978) #25	ENSSPAG00000011767	gpatch4 (ENSSPAG00000011683)	ENSSPAG00000011667
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00940000181547	ENSGT00940000165143.a.b.g	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246.a	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Oryzias	ANCESTRAL SPECIES	2	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00940000158438.n	ENSGT00950000183180.a.b	ENSGT00940000167370	ENSGT00390000002634.a.e	ENSGT00940000166061.b	ENSGT00940000166527	ENSGT00700000104815.g	ENSGT00980000198606	ENSGT00940000159023	ENSGT00940000153385.b.a.b.fd.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000177047.D	ENSGT00940000167246.a	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246.b	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000154566 #31	ENSGT00940000158438.n	ENSGT00950000183180.a.b	ENSGT00940000167370	ENSGT00390000002634.a.e	ENSGT00940000166061.b	ENSGT00940000166527	ENSGT01000000218930.a.a	ENSGT00700000104815.g	ENSGT00980000198621	ENSGT00940000159023	ENSGT00940000153385.b.a.b.fd.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.g.a.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.g.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.h	ENSGT00940000167246.b	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828
Indian medaka	MODERN SPECIES	33	ENSOMEG00000021082	ENSOMEG00000021059	rgl2 (ENSOMEG00000020962)	dnase2 (ENSOMEG00000020788)	ENSOMEG00000020764	pbx2 (ENSOMEG00000020750)	ENSOMEG00000020725	ENSOMEG00000020710	ENSOMEG00000000548	ENSOMEG00000020685	TAP1 (ENSOMEG00000020635)	BRD2 (ENSOMEG00000020558)	ENSOMEG00000020508	ENSOMEG00000020470	ENSOMEG00000020446	lamtor2 (ENSOMEG00000020398) #22	rab25b (ENSOMEG00000020350) #23	ENSOMEG00000020271	ENSOMEG00000020254	lmna (ENSOMEG00000020229) #25	ENSOMEG00000020156	gpatch4 (ENSOMEG00000000529)	ENSOMEG00000020092	ENSOMEG00000020082	ENSOMEG00000020071	ENSOMEG00000020059	ENSOMEG00000020042	ENSOMEG00000020028	ENSOMEG00000020005	ENSOMEG00000019992	ENSOMEG00000019967
Javanese ricefish	MODERN SPECIES	7	ntrk1 (ENSOJAG00000006505)	PAQR6 (ENSOJAG00000006479) #30	smg5 (ENSOJAG00000005804) #31	SYNGAP1 (ENSOJAG00000005637)	PHF1 (ENSOJAG00000005536)	rgl2 (ENSOJAG00000005407)	dnase2 (ENSOJAG00000005393)	pbx2 (ENSOJAG00000005367)	ENSOJAG00000005348	ENSOJAG00000005345	ENSOJAG00000005333	ENSOJAG00000005309	ENSOJAG00000005299	ENSOJAG00000005287	ENSOJAG00000005277	lamtor2 (ENSOJAG00000005223) #22	rab25b (ENSOJAG00000005193) #23	rab11al (ENSOJAG00000005141)	ENSOJAG00000005130	lmna (ENSOJAG00000005058) #25	ENSOJAG00000004929	gpatch4 (ENSOJAG00000004871)	ENSOJAG00000004856	ENSOJAG00000004836	ENSOJAG00000004763	ENSOJAG00000004738	ENSOJAG00000004727	rab5ab (ENSOJAG00000004641)	ZNF385D (ENSOJAG00000004622)	ube2e1 (ENSOJAG00000004555)	nr1d2a (ENSOJAG00000004540)
Oryzias_a	ANCESTRAL SPECIES	37	ENSGT00940000160567 #30	ENSGT00940000154566 #31	ENSGT00940000158438.n	ENSGT00950000183180.a.b	ENSGT00940000167370	ENSGT00390000002634.a.e	ENSGT00940000175842	ENSGT00940000166527	ENSGT00700000104815.g	ENSGT00980000198606	ENSGT00940000159023	ENSGT00940000153385.b.a.b.fd.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000177047.D.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.e	ENSGT00940000167246.b	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a
Chinese medaka	MODERN SPECIES	1244	mtmr11 (ENSOSIG00000013010)	otud7b (ENSOSIG00000013015)	afp4 (ENSOSIG00000013018)	PAQR6 (ENSOSIG00000013020) #30	smg5 (ENSOSIG00000013022) #31	SYNGAP1 (ENSOSIG00000013041)	ENSOSIG00000013187	rgl2 (ENSOSIG00000013189)	dnase2 (ENSOSIG00000013192)	ENSOSIG00000013193	pbx2 (ENSOSIG00000013197)	ENSOSIG00000013200	TAP1 (ENSOSIG00000013202)	brd2b (ENSOSIG00000013328)	ENSOSIG00000013329	lamtor2 (ENSOSIG00000013332) #22	rab25b (ENSOSIG00000013339) #23	ENSOSIG00000013348 #25
Japanese Medaka HdrR	MODERN SPECIES	7	SYNGAP1 (ENSORLG00000016229)	ENSORLG00000016201	rgl2 (ENSORLG00000016196)	dnase2 (ENSORLG00000016180)	ENSORLG00000022607	pbx2 (ENSORLG00000016171)	her7 (ENSORLG00000016162)	ENSORLG00000030036	TAP1 (ENSORLG00000016158)	ENSORLG00000016149	ENSORLG00000027926	ENSORLG00000028393	ENSORLG00000027277	ENSORLG00000016141	ENSORLG00000026168	lamtor2 (ENSORLG00000016136) #22	ENSORLG00000023550	rab25b (ENSORLG00000016135) #23	rab11al (ENSORLG00000016126)	ENSORLG00000024166	ENSORLG00000022707	lmna (ENSORLG00000016113) #25	ENSORLG00000016110	ENSORLG00000016102	ENSORLG00000023907	ENSORLG00000023401	ENSORLG00000029817	ENSORLG00000025335	ENSORLG00000030523	ENSORLG00000030209	ENSORLG00000025952
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246.a.a.a	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246.a.a.b	ENSGT00940000167246.a.a.a.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246.a.a.a.a	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.j	ENSGT00940000167246.a.a.a.b.a.a	ENSGT00940000167246.a.a.a.b.a.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.i.a.a	ENSGT01020000230673.B	ENSGT00940000174114	ENSGT00940000157010.m	ENSGT00390000016199.a
Poecilia	ANCESTRAL SPECIES		ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246.a.a.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.j	ENSGT00940000167246.a.a.a.b.a.a	ENSGT00940000167246.a.a.a.b.a.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.i.a.a	ENSGT01020000230673.A.d.b
NAME_6	ANCESTRAL SPECIES	175	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246.a.a.a.a.a.a	ENSGT00940000167246.a.a.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.j	ENSGT00940000167246.a.a.a.b.a.b
Amazon molly	MODERN SPECIES	513	ENSPFOG00000011054	SV2A (ENSPFOG00000011055)	bola1 (ENSPFOG00000020450)	nr2f5 (ENSPFOG00000011150)	ENSPFOG00000011194	ENSPFOG00000023669	rpz (ENSPFOG00000020451)	rpz6 (ENSPFOG00000011206)	rpz5 (ENSPFOG00000022427)	rpz5 (ENSPFOG00000020452)	rpz4 (ENSPFOG00000020453)	ENSPFOG00000011217	ENSPFOG00000011230	ENSPFOG00000011232	ENSPFOG00000011272	lamtor2 (ENSPFOG00000011309) #22	rab25b (ENSPFOG00000011310) #23	rab11al (ENSPFOG00000011316)	ENSPFOG00000011366	lmna (ENSPFOG00000011389) #25	ENSPFOG00000011648	gpatch4 (ENSPFOG00000011835)	ENSPFOG00000021833	ENSPFOG00000022351	ENSPFOG00000011860	ENSPFOG00000011872	ENSPFOG00000011886	ENSPFOG00000011893	ENSPFOG00000022819
Sailfin molly	MODERN SPECIES	472					bola1 (ENSPLAG00000008152)	nr2f5 (ENSPLAG00000008137)	ENSPLAG00000008116	rpz (ENSPLAG00000008099)	rpz6 (ENSPLAG00000008092)	ENSPLAG00000008082	rpz5 (ENSPLAG00000008067)	rpz4 (ENSPLAG00000008058)	ENSPLAG00000008049	ENSPLAG00000008043	ENSPLAG00000008027	lamtor2 (ENSPLAG00000008013) #22	rab25b (ENSPLAG00000008004) #23	rab11al (ENSPLAG00000007986)	ENSPLAG00000007972	ENSPLAG00000007965 #25
Guppy	MODERN SPECIES	446	afp4 (ENSPREG00000017587)	rbm8a (ENSPREG00000017572)	otud7b (ENSPREG00000017548)	mtmr11 (ENSPREG00000017533)	SV2A (ENSPREG00000017505)	bola1 (ENSPREG00000017489)	nr2f5 (ENSPREG00000017478)	ENSPREG00000017462	rpz (ENSPREG00000017451)	rpz6 (ENSPREG00000017443)	rpz5 (ENSPREG00000017425)	rpz4 (ENSPREG00000017417)	ENSPREG00000017402	ENSPREG00000017387	ENSPREG00000017369	lamtor2 (ENSPREG00000017357) #22	rab25b (ENSPREG00000017337) #23	rab11al (ENSPREG00000017324)	ENSPREG00000017309	lmna (ENSPREG00000017213) #25	ENSPREG00000017085	ENSPREG00000017066	gpatch4 (ENSPREG00000017029)	ENSPREG00000017005	ENSPREG00000016994	ENSPREG00000016981	ENSPREG00000016971	ENSPREG00000016950	ENSPREG00000016940	ENSPREG00000016926	ENSPREG00000016903
Platyfish	MODERN SPECIES	17	afp4 (ENSXMAG00000013467)	rbm8a (ENSXMAG00000013463)	otud7b (ENSXMAG00000013458)	mtmr11 (ENSXMAG00000013453)	SV2A (ENSXMAG00000013444)	bola1 (ENSXMAG00000019538)	nr2f5 (ENSXMAG00000013436)	ENSXMAG00000013435	rpz (ENSXMAG00000019536)	rpz6 (ENSXMAG00000025231)	rpz5 (ENSXMAG00000020380)	rpz4 (ENSXMAG00000023516)	ENSXMAG00000020842	ENSXMAG00000013432	ENSXMAG00000013429	lamtor2 (ENSXMAG00000028948) #22	rab25b (ENSXMAG00000028745) #23	rab11al (ENSXMAG00000027071)	ENSXMAG00000013412	ENSXMAG00000028413	lmna (ENSXMAG00000013395) #25	ENSXMAG00000013394	gpatch4 (ENSXMAG00000024520)	ENSXMAG00000029076	ENSXMAG00000013390	ENSXMAG00000026010	ENSXMAG00000022460	ENSXMAG00000022882	ENSXMAG00000002563	ENSXMAG00000026134	ENSXMAG00000028796
NAME_4	ANCESTRAL SPECIES	270									ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.g.a	ENSGT00510000051675.h.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765
Mummichog	MODERN SPECIES	2487	pglyrp2 (ENSFHEG00000002780)	mcoln1a (ENSFHEG00000002806)	ENSFHEG00000002815	si:ch211-214c7.5 (ENSFHEG00000002821)	PKN1 (ENSFHEG00000002855)	map2k7 (ENSFHEG00000002882)	myh9a (ENSFHEG00000002933)	slc25a38b (ENSFHEG00000002946)	rpz (ENSFHEG00000002950)	rpz6 (ENSFHEG00000002959)	rpz5 (ENSFHEG00000002968)	rpz4 (ENSFHEG00000002974)	ENSFHEG00000002987	ENSFHEG00000003001	ENSFHEG00000003005	lamtor2 (ENSFHEG00000003010) #22	rab25b (ENSFHEG00000003018) #23	rab11al (ENSFHEG00000000832)	ENSFHEG00000003026	lmna (ENSFHEG00000003048) #25	ENSFHEG00000003060	gpatch4 (ENSFHEG00000003097)
Sheepshead minnow	MODERN SPECIES	1675																lamtor2 (ENSCVAG00000019967) #22	rab25b (ENSCVAG00000020003) #23	rab11al (ENSCVAG00000020016)	ENSCVAG00000020021	lmna (ENSCVAG00000020062) #25
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000159172	ENSGT00940000160276	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246.a.a.b
Mangrove rivulus	MODERN SPECIES	388								ENSKMAG00000015299	rpz (ENSKMAG00000015317)	rpz6 (ENSKMAG00000015330)	rpz5 (ENSKMAG00000015347)	rpz4 (ENSKMAG00000015357)	ENSKMAG00000015368	ENSKMAG00000015384	ENSKMAG00000015404	lamtor2 (ENSKMAG00000015425) #22	rab25b (ENSKMAG00000015488) #23	rab11al (ENSKMAG00000015516)	ENSKMAG00000015538	lmna (ENSKMAG00000015573) #25	ENSKMAG00000015665	gpatch4 (ENSKMAG00000015765)	ENSKMAG00000015809
Turquoise killifish	MODERN SPECIES	1614	MTMR11 (ENSNFUG00015004821)	SV2A (ENSNFUG00015004677)	bola1 (ENSNFUG00015004661)	nr2f5 (ENSNFUG00015004653)	ENSNFUG00015004646	ENSNFUG00015004643	Nfu_g_1_024366 (ENSNFUG00015004639)	ENSNFUG00015004637	RPZ (ENSNFUG00015004635)	Nfu_g_1_010989 (ENSNFUG00015004634)	RPZ5 (ENSNFUG00015004631)	rpz4 (ENSNFUG00015004629)	ENSNFUG00015004625	ENSNFUG00015004619	ENSNFUG00015004615	LAMTOR2 (ENSNFUG00015004609) #22	RAB25 (ENSNFUG00015004604) #23	rab11al (ENSNFUG00015004595)	ENSNFUG00015004588	LMNA (ENSNFUG00015004578) #25	gpatch4 (ENSNFUG00015004571)	ENSNFUG00015004568	ENSNFUG00015004567	ENSNFUG00015004559	ENSNFUG00015004553	ENSNFUG00015004543	Nfu_g_1_011092 (ENSNFUG00015004534)	ENSNFUG00015004526	SH3BP5LA (ENSNFUG00015004516)	MGAT1A (ENSNFUG00015004510)	rnf183 (ENSNFUG00015004507)
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT01100000263776	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00940000181991	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT01100000263776	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT01100000263776	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Zig-zag eel	MODERN SPECIES	7	afp4 (ENSMAMG00000010579)	rbm8a (ENSMAMG00000010565)	otud7b (ENSMAMG00000028073)	mtmr11 (ENSMAMG00000010471)	SV2A (ENSMAMG00000010430)	bola1 (ENSMAMG00000010420)	nr2f5 (ENSMAMG00000010413)	ENSMAMG00000027679	rpz (ENSMAMG00000024469)	rpz6 (ENSMAMG00000010377)	rpz5 (ENSMAMG00000010370)	rpz4 (ENSMAMG00000010365)	ENSMAMG00000010351	ENSMAMG00000010325	zgc:174938 (ENSMAMG00000010322)	lamtor2 (ENSMAMG00000025086) #22	rab25b (ENSMAMG00000010297) #23	rab11al (ENSMAMG00000010278)	ENSMAMG00000010269	LMNA (ENSMAMG00000010224) #25	ENSMAMG00000010170	ENSMAMG00000010128	ENSMAMG00000010114	ENSMAMG00000010151	bag6 (ENSMAMG00000010081)	ENSMAMG00000010064	ENSMAMG00000010046	ENSMAMG00000010036	tnfb (ENSMAMG00000010016)	ENSMAMG00000009911	sh3bp5la (ENSMAMG00000009878)
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT01100000263776	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Siamese fighting fish	MODERN SPECIES	7	otud7b (ENSBSLG00000013769)	mtmr11 (ENSBSLG00000013750)	SV2A (ENSBSLG00000013319)	bola1 (ENSBSLG00000019240)	nr2f5 (ENSBSLG00000019234)	ENSBSLG00000019220	rpz (ENSBSLG00000019204)	rpz6 (ENSBSLG00000019201)	rpz5 (ENSBSLG00000019197)	rpz4 (ENSBSLG00000019195)	ENSBSLG00000019187	ENSBSLG00000019170	ENSBSLG00000019166	ENSBSLG00000019161	zgc:174938 (ENSBSLG00000019156)	lamtor2 (ENSBSLG00000019151) #22	rab25b (ENSBSLG00000019118) #23	rab11al (ENSBSLG00000019078)	ENSBSLG00000019060	lmna (ENSBSLG00000018857) #25	ENSBSLG00000018779	gpatch4 (ENSBSLG00000018588)	ENSBSLG00000018563	ENSBSLG00000018551	tspan13a (ENSBSLG00000018453)	glrx3 (ENSBSLG00000018428)	ENSBSLG00000018418	ENSBSLG00000018408	bag6 (ENSBSLG00000018200)	tnfb (ENSBSLG00000017875)	GABBR1 (ENSBSLG00000016851)
Climbing perch	MODERN SPECIES	7	otud7b (ENSATEG00000005677)	mtmr11 (ENSATEG00000005761)	SV2A (ENSATEG00000005856)	bola1 (ENSATEG00000005915)	nr2f5 (ENSATEG00000005947)	ENSATEG00000005961	rpz (ENSATEG00000005967)	rpz6 (ENSATEG00000005973)	rpz5 (ENSATEG00000005981)	rpz4 (ENSATEG00000006002)	ENSATEG00000006009	ENSATEG00000006066	ENSATEG00000006075	ENSATEG00000006083	zgc:174938 (ENSATEG00000006093)	lamtor2 (ENSATEG00000006099) #22	rab25b (ENSATEG00000006124) #23	rab11al (ENSATEG00000006156)	ENSATEG00000006186	LMNA (ENSATEG00000006201) #25	ENSATEG00000006264	ENSATEG00000006359	ENSATEG00000006370	tspan13a (ENSATEG00000006379)	bag6 (ENSATEG00000006414)	ENSATEG00000028304	ENSATEG00000027255	ENSATEG00000006426	tnfb (ENSATEG00000006438)	ENSATEG00000006492	sh3bp5la (ENSATEG00000006630)
Carangaria	ANCESTRAL SPECIES	1	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Turbot	MODERN SPECIES		ddx55 (ENSSMAG00000010441)	tmed2 (ENSSMAG00000010428)	ptpn11a (ENSSMAG00000010396)	ENSSMAG00000010362	pla2g3 (ENSSMAG00000010333)	ENSSMAG00000015914	pitpnb (ENSSMAG00000015998)	ENSSMAG00000016014	ENSSMAG00000016058	tor4aa (ENSSMAG00000016098)	ENSSMAG00000016105	ENSSMAG00000027216	ENSSMAG00000016129	ubqln4 (ENSSMAG00000016169) #21	zgc:174938 (ENSSMAG00000016164)	lamtor2 (ENSSMAG00000016176) #22	rab25b (ENSSMAG00000016183) #23	rab11al (ENSSMAG00000016206)	ENSSMAG00000016216	LMNA (ENSSMAG00000016221) #25	ENSSMAG00000016239	ENSSMAG00000016329	ENSSMAG00000016340	ENSSMAG00000016351	tspan13a (ENSSMAG00000016378)	bag6 (ENSSMAG00000016500)	ENSSMAG00000016524	ENSSMAG00000016541	ENSSMAG00000016548	TNF (ENSSMAG00000016564)	ENSSMAG00000016587
Tongue sole	MODERN SPECIES	4	bola1 (ENSCSEG00000011813)	SV2A (ENSCSEG00000011818)	ENSCSEG00000011831	mtmr11 (ENSCSEG00000011837)	otud7b (ENSCSEG00000011851)	rbm8a (ENSCSEG00000011865)	ENSCSEG00000011878	ENSCSEG00000011891	nr2f5 (ENSCSEG00000011922)	ENSCSEG00000011928	rpz (ENSCSEG00000011938)	rpz6 (ENSCSEG00000011944)	rpz5 (ENSCSEG00000011948)	rpz4 (ENSCSEG00000011950)	tmem176l.4 (ENSCSEG00000011957)	lamtor2 (ENSCSEG00000011971) #22	rab25b (ENSCSEG00000011982) #23	rab11al (ENSCSEG00000011996)	ENSCSEG00000012003	lmna (ENSCSEG00000012011) #25	ENSCSEG00000012025	gpatch4 (ENSCSEG00000012030)	bag6 (ENSCSEG00000012039)	glrx3 (ENSCSEG00000012085)	etsrp (ENSCSEG00000012087)	fli1rs (ENSCSEG00000012100)	ENSCSEG00000012120	dhx16 (ENSCSEG00000012134)	rnf183 (ENSCSEG00000012189)	ENSCSEG00000012198	mgat1a (ENSCSEG00000012203)
Carangaria_A	ANCESTRAL SPECIES	27	ENSGT00940000159172	ENSGT00940000160276	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259
Barramundi perch	MODERN SPECIES	104	mtmr11 (ENSLCAG00010001385)	SV2A (ENSLCAG00010001399)	bola1 (ENSLCAG00010001414)	nr2f5 (ENSLCAG00010001419)	ENSLCAG00010001426	rpz (ENSLCAG00010001429)	rpz6 (ENSLCAG00010001431)	rpz5 (ENSLCAG00010001433)	rpz4 (ENSLCAG00010001434)	ENSLCAG00010001436	ENSLCAG00010001441	ENSLCAG00010001444	ENSLCAG00010001445	zgc:174938 (ENSLCAG00010001449)	ubqln4 (ENSLCAG00010001452) #21	lamtor2 (ENSLCAG00010001456) #22	rab25b (ENSLCAG00010001467) #23	rab11al (ENSLCAG00010001475)	ENSLCAG00010001496	lmna (ENSLCAG00010001534) #25	ENSLCAG00010001595	gpatch4 (ENSLCAG00010001603)	ENSLCAG00010001606	ENSLCAG00010001609	tspan13a (ENSLCAG00010001613)	bag6 (ENSLCAG00010001641)	glrx3 (ENSLCAG00010001678)	ENSLCAG00010001680	ENSLCAG00010001682	tnfb (ENSLCAG00010001689)	GABBR1 (ENSLCAG00010001724)
Seriola	ANCESTRAL SPECIES	76	ENSGT00390000013670.f	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00940000181495	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Yellowtail amberjack	MODERN SPECIES	2147																lamtor2 (ENSSLDG00000017983) #22
Greater amberjack	MODERN SPECIES	44	SV2A (ENSSDUG00000006062)	bola1 (ENSSDUG00000006093)	bola1 (ENSSDUG00000006099)	nr2f5 (ENSSDUG00000006112)	ENSSDUG00000006116	ENSSDUG00000006124	rpz (ENSSDUG00000006138)	rpz6 (ENSSDUG00000006147)	rpz5 (ENSSDUG00000006159)	rpz4 (ENSSDUG00000006166)	ENSSDUG00000006170	ENSSDUG00000006180	ENSSDUG00000006200	zgc:174938 (ENSSDUG00000006207)	ubqln4 (ENSSDUG00000006235) #21	lamtor2 (ENSSDUG00000006243) #22	rab25b (ENSSDUG00000006260) #23	rab11al (ENSSDUG00000006278)	ENSSDUG00000006298	lmna (ENSSDUG00000006311) #25	ENSSDUG00000006373	gpatch4 (ENSSDUG00000006583)	ENSSDUG00000006598	ENSSDUG00000006612	tspan13a (ENSSDUG00000006625)	bag6 (ENSSDUG00000006651)	ENSSDUG00000006707	glrx3 (ENSSDUG00000006716)	ENSSDUG00000006728	ENSSDUG00000006743	tnfb (ENSSDUG00000006756)
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT01100000263776	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00940000181991	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828
Tetraodontidae	ANCESTRAL SPECIES	203																ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B
Fugu	MODERN SPECIES	19	INPP5B (ENSTRUG00000005297)	ENSTRUG00000026142	yrdc (ENSTRUG00000026868)	ENSTRUG00000032845	LIN28A (ENSTRUG00000026738)	mecr (ENSTRUG00000027274)	smpdl3b (ENSTRUG00000006324)	rpa2 (ENSTRUG00000025205)	ENSTRUG00000030776	psmc4 (ENSTRUG00000006577)	ENSTRUG00000027040	ENSTRUG00000030194	zp3d.2 (ENSTRUG00000023387)	fli1rs (ENSTRUG00000007024)	etsrp (ENSTRUG00000007420)	lamtor2 (ENSTRUG00000026694) #22	rab25b (ENSTRUG00000007504) #23	rab11al (ENSTRUG00000007556)	ENSTRUG00000007796	lmna (ENSTRUG00000007840) #25	ENSTRUG00000033210	ENSTRUG00000008219	ENSTRUG00000028279	scn1ba (ENSTRUG00000008725)	ENSTRUG00000008863	si:ch211-225p5.8 (ENSTRUG00000009146)	ENSTRUG00000026781	dnajc28 (ENSTRUG00000009179)	ENSTRUG00000029130	lsr (ENSTRUG00000009199)	mag (ENSTRUG00000009367)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000004034	snx21 (ENSTNIG00000004031)	ENSTNIG00000000990	CCNJ (ENSTNIG00000004023)	BTAF1 (ENSTNIG00000004022)	ENSTNIG00000004021	ENSTNIG00000004020	ENSTNIG00000004019	exosc6 (ENSTNIG00000004018)	ENSTNIG00000004017	aars1 (ENSTNIG00000004016)	st3gal2 (ENSTNIG00000004015)	ENSTNIG00000004014	ENSTNIG00000004009	marchf5 (ENSTNIG00000004006)	lamtor2 (ENSTNIG00000004005) #22	ENSTNIG00000004004 #23	ENSTNIG00000004001	ENSTNIG00000004000	ENSTNIG00000003999	ldb1a (ENSTNIG00000003998)	ENSTNIG00000003997	tfap2d (ENSTNIG00000003995)	MAST2 (ENSTNIG00000003994)	ENSTNIG00000003993	mmd2a (ENSTNIG00000003992)	ap5z1 (ENSTNIG00000003991)	ENSTNIG00000003990	SDS (ENSTNIG00000003987)	ENSTNIG00000003980	ENSTNIG00000003979
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT01100000263776	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00940000181991	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828
Ballan wrasse	MODERN SPECIES	219	rnf183 (ENSLBEG00000017224)	mgat1a (ENSLBEG00000017206)	sh3bp5la (ENSLBEG00000017195)	ENSLBEG00000017182	GABBR1 (ENSLBEG00000017055)	tnfb (ENSLBEG00000016956)	ENSLBEG00000016944	glrx3 (ENSLBEG00000016920)	ENSLBEG00000016899	bag6 (ENSLBEG00000016665)	tspan13a (ENSLBEG00000016592)	ENSLBEG00000016567	ENSLBEG00000016540	ENSLBEG00000016514	ubqln4 (ENSLBEG00000016483) #21	lamtor2 (ENSLBEG00000016466) #22	rab25b (ENSLBEG00000016446) #23	rab11al (ENSLBEG00000016417)	ENSLBEG00000016402	lmna (ENSLBEG00000016348) #25	ENSLBEG00000016316	gpatch4 (ENSLBEG00000016296)	ENSLBEG00000016277	ENSLBEG00000016253	ENSLBEG00000016237	ENSLBEG00000016222	ENSLBEG00000016203	ENSLBEG00000016182	rpz4 (ENSLBEG00000016167)	rpz5 (ENSLBEG00000016154)	rpz5 (ENSLBEG00000016141)
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00940000160276	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00990000204623	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Gilthead seabream	MODERN SPECIES	8	nr2f5 (ENSSAUG00010014064)	ENSSAUG00010014054	ENSSAUG00010014048	rpz (ENSSAUG00010014046)	rpz6 (ENSSAUG00010014043)	rpz5 (ENSSAUG00010014040)	rpz4 (ENSSAUG00010014038)	ENSSAUG00010014033	ENSSAUG00010014032	ENSSAUG00010013986	ENSSAUG00010013958	ENSSAUG00010013942	ENSSAUG00010013933	zgc:174938 (ENSSAUG00010013927)	ENSSAUG00010013924 #21	lamtor2 (ENSSAUG00010013916) #22	rab25b (ENSSAUG00010013906) #23	rab11al (ENSSAUG00010013897)	ENSSAUG00010013894	lmna (ENSSAUG00010013671) #25	ENSSAUG00010013666	gpatch4 (ENSSAUG00010013661)	ENSSAUG00010013659	ENSSAUG00010013658	ENSSAUG00010013657	ENSSAUG00010013656	tspan13a (ENSSAUG00010013655)	bag6 (ENSSAUG00010013653)	glrx3 (ENSSAUG00010013651)	ENSSAUG00010013650	ENSSAUG00010013648
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000170682	ENSGT00940000167095.B	ENSGT00940000163828.b.b.d	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
European seabass	MODERN SPECIES	6	otud7b (ENSDLAG00005009187)	mtmr11 (ENSDLAG00005009208)	ENSDLAG00005031318	nr2f5 (ENSDLAG00005009248)	ENSDLAG00005009259	ENSDLAG00005034002	ENSDLAG00005035037	rpz6 (ENSDLAG00005028300)	rpz5 (ENSDLAG00005027375)	rpz4 (ENSDLAG00005026708)	ENSDLAG00005009289	ENSDLAG00005009296	ENSDLAG00005029399	zgc:174938 (ENSDLAG00005014746)	ENSDLAG00005026442 #21	lamtor2 (ENSDLAG00005009320) #22	rab25b (ENSDLAG00005009338) #23	ENSDLAG00005033062	LMNA (ENSDLAG00005009437) #25	ENSDLAG00005009606	ENSDLAG00005035098	ENSDLAG00005009616	tspan13a (ENSDLAG00005009625)	bag6 (ENSDLAG00005009642)	ENSDLAG00005009690	ENSDLAG00005009704	ENSDLAG00005009718	tnfb (ENSDLAG00005009729)	ENSDLAG00005000313	rnf183 (ENSDLAG00005000783)	rnf183 (ENSDLAG00005029371)
Large yellow croaker	MODERN SPECIES	484	nr2f5 (ENSLCRG00005001332)	ENSLCRG00005001329	ENSLCRG00005001322	ENSLCRG00005001319	rpz (ENSLCRG00005001318)	rpz6 (ENSLCRG00005001317)	rpz5 (ENSLCRG00005001315)	rpz4 (ENSLCRG00005001314)	ENSLCRG00005001306	ENSLCRG00005001299	ENSLCRG00005001297	ENSLCRG00005001292	ENSLCRG00005001283	zgc:174938 (ENSLCRG00005001280)	ENSLCRG00005001279 #21	lamtor2 (ENSLCRG00005001275) #22	rab25b (ENSLCRG00005001267) #23	ENSLCRG00005001266	rab11al (ENSLCRG00005001210)	lmna (ENSLCRG00005001196) #25	ENSLCRG00005000883	gpatch4 (ENSLCRG00005000831)	ENSLCRG00005000821	ENSLCRG00005000814	ENSLCRG00005000792	tspan13a (ENSLCRG00005000782)	glrx3 (ENSLCRG00005000772)	ENSLCRG00005000763	ENSLCRG00005000756	bag6 (ENSLCRG00005000687)	tnfb (ENSLCRG00005000649)
Perciformes	ANCESTRAL SPECIES	3	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g
Pike perch	MODERN SPECIES	50	bola1 (ENSSLUG00000011810)	nr2f5 (ENSSLUG00000011814)	ENSSLUG00000011820	rpz (ENSSLUG00000011824)	rpz6 (ENSSLUG00000011826)	rpz5 (ENSSLUG00000011829)	rpz4 (ENSSLUG00000011830)	ENSSLUG00000011831	ENSSLUG00000011833	ENSSLUG00000011835	ENSSLUG00000011840	ENSSLUG00000011848	ENSSLUG00000011884	ENSSLUG00000011887	ubqln4 (ENSSLUG00000011892) #21	lamtor2 (ENSSLUG00000011893) #22	rab25b (ENSSLUG00000011900) #23	rab11al (ENSSLUG00000011904)	ENSSLUG00000011910	lmna (ENSSLUG00000011940) #25	ENSSLUG00000012071	ENSSLUG00000012081	gpatch4 (ENSSLUG00000012088)
Channel bull blenny	MODERN SPECIES	7	ntrk1 (ENSCGOG00000005507)	rbm8a (ENSCGOG00000005468)	otud7b (ENSCGOG00000005461)	mtmr11 (ENSCGOG00000005452)	SV2A (ENSCGOG00000005197)	bola1 (ENSCGOG00000005186)	nr2f5 (ENSCGOG00000005173)	ENSCGOG00000005170	rpz (ENSCGOG00000005167)	rpz6 (ENSCGOG00000005164)	rpz5 (ENSCGOG00000005163)	rpz4 (ENSCGOG00000005162)	tmem176l.4 (ENSCGOG00000005158)	zgc:174938 (ENSCGOG00000005156)	ubqln4 (ENSCGOG00000005155) #21	lamtor2 (ENSCGOG00000005147) #22	rab25b (ENSCGOG00000005132) #23	rab11al (ENSCGOG00000005129)	ENSCGOG00000005128	lmna (ENSCGOG00000004574) #25	gpatch4 (ENSCGOG00000004533)	ENSCGOG00000004528	ENSCGOG00000004525	tspan13a (ENSCGOG00000004522)	bag6 (ENSCGOG00000004255)	glrx3 (ENSCGOG00000004243)	ENSCGOG00000004238	tnfb (ENSCGOG00000004212)	GABBR1 (ENSCGOG00000002486)	sh3bp5la (ENSCGOG00000002327)	mgat1a (ENSCGOG00000002315)
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000170682	ENSGT00940000167095.B	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #21	ENSGT00390000006100 #22	ENSGT00940000158230.b.a #23	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #25	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01100000263776	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Lumpfish	MODERN SPECIES	17	mtmr11 (ENSCLMG00005019078)	SV2A (ENSCLMG00005019080)	bola1 (ENSCLMG00005019432)	nr2f5 (ENSCLMG00005019433)	ENSCLMG00005019434	ENSCLMG00005019435	rpz (ENSCLMG00005019437)	rpz6 (ENSCLMG00005012078)	rpz5 (ENSCLMG00005012079)	rpz4 (ENSCLMG00005012081)	rpz4 (ENSCLMG00005012082)	rpz4 (ENSCLMG00005012083)	tmem176l.4 (ENSCLMG00005012084)	zgc:174938 (ENSCLMG00005012085)	ubqln4 (ENSCLMG00005012086) #21	lamtor2 (ENSCLMG00005012087) #22	rab25b (ENSCLMG00005012088) #23	rab11al (ENSCLMG00005012089)	ENSCLMG00005012129	lmna (ENSCLMG00005012130) #25	ENSCLMG00005012134	gpatch4 (ENSCLMG00005012325)	ENSCLMG00005012326	tspan13a (ENSCLMG00005012327)	bag6 (ENSCLMG00005012328)	ENSCLMG00005012329	ENSCLMG00005012330	ENSCLMG00005012331	GABBR1 (ENSCLMG00005012336)	sh3bp5la (ENSCLMG00005012425)	mgat1a (ENSCLMG00005012427)
Stickleback	MODERN SPECIES	19	mtmr11 (ENSGACG00000013174)	ENSGACG00000013179	SV2A (ENSGACG00000013181)	bola1 (ENSGACG00000013188)	nr2f5 (ENSGACG00000013191)	ENSGACG00000013194	ENSGACG00000013202	ENSGACG00000013206	rpz (ENSGACG00000013209)	rpz6 (ENSGACG00000013211)	ENSGACG00000013214	rpz4 (ENSGACG00000013217)	tmem176l.4 (ENSGACG00000013220)	zgc:174938 (ENSGACG00000013227)	ubqln4 (ENSGACG00000013230) #21	lamtor2 (ENSGACG00000013237) #22	rab25b (ENSGACG00000013249) #23	rab11al (ENSGACG00000013259)	ENSGACG00000013282	lmna (ENSGACG00000013285) #25	ENSGACG00000013308	gpatch4 (ENSGACG00000013318)	ENSGACG00000013326	ENSGACG00000013327	tspan13a (ENSGACG00000013330)	bag6 (ENSGACG00000013337)	tnfb (ENSGACG00000013372)	GABBR1 (ENSGACG00000013381)	sh3bp5la (ENSGACG00000013391)	dnali1 (ENSGACG00000013396)	lingo4b (ENSGACG00000013398)
Elephant shark	MODERN SPECIES	2979																lamtor2 (ENSCMIG00000004012) #22	RAB25 (ENSCMIG00000004015) #23
Cyclostomata	ANCESTRAL SPECIES	500															ENSGT00550000075028	ENSGT00390000006100 #22
Hagfish	MODERN SPECIES	1394	ENSEBUG00000004918	ENSEBUG00000004781	ENSEBUG00000000785	ENSEBUG00000003546	pofut1 (ENSEBUG00000014063)	ENSEBUG00000012817	ENSEBUG00000007499	ENSEBUG00000015003	ENSEBUG00000006564	blvrb (ENSEBUG00000000884)	ENSEBUG00000003902	banf1 (ENSEBUG00000004143)	ENSEBUG00000015743	ENSEBUG00000009956	vps45 (ENSEBUG00000016617)	lamtor2 (ENSEBUG00000009407) #22	taf5 (ENSEBUG00000002476)	ENSEBUG00000012626	ENSEBUG00000011043	ENSEBUG00000010706	ENSEBUG00000014351	KCTD3 (ENSEBUG00000001832)	ENSEBUG00000015051	ENSEBUG00000009925	ENSEBUG00000013995	ENSEBUG00000011299	ENSEBUG00000012550	ENSEBUG00000016999	mphosph10 (ENSEBUG00000000786)	ENSEBUG00000000798	ENSEBUG00000005055
Ciona	ANCESTRAL SPECIES																	ENSGT00390000006100 #22
Ciona intestinalis	MODERN SPECIES	7	ENSCING00000009502	ENSCING00000012804	ENSCING00000023136	ENSCING00000009513	ENSCING00000009512	ENSCING00000022020	ENSCING00000023356	ENSCING00000009511	ENSCING00000024377	ENSCING00000025109	ENSCING00000009510	ENSCING00000009509	ENSCING00000022326	e12/e47 (ENSCING00000009523)	ENSCING00000009522	ENSCING00000012787 #22	ENSCING00000009868	ENSCING00000012788	ENSCING00000009521	ENSCING00000009520	ENSCING00000019113	ENSCING00000023159	ENSCING00000009519	ENSCING00000009518	ENSCING00000009517	cagf9 (ENSCING00000009516)	ck2a (ENSCING00000009515)	ENSCING00000019065	ENSCING00000018669	ENSCING00000025166	ENSCING00000009514