Euteleostomi	ANCESTRAL SPECIES	80				ENSGT00940000166703	ENSGT00530000063529.C	ENSGT00940000160622	ENSGT00390000005140.b.b	ENSGT00390000013989.a	ENSGT00950000183071.a.a.b	ENSGT00390000004600.b.a	ENSGT00940000165265	ENSGT01080000257487	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b	ENSGT01100000263502.A.a.a.b	ENSGT00940000157053
Sarcopterygii	ANCESTRAL SPECIES	5	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT01030000234629.C #17	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b	ENSGT01100000263502.A.a.a.b	ENSGT00940000157053
Tetrapoda	ANCESTRAL SPECIES	12	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT01030000234629.C #17	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000159217	ENSGT00390000011553	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a
Amniota	ANCESTRAL SPECIES	13	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT01030000234629.C #17	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b	ENSGT01100000263502.A.a.a.b
Mammalia	ANCESTRAL SPECIES	72										ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT01030000234629.C #17	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b	ENSGT00940000157053	ENSGT00940000159828
Theria	ANCESTRAL SPECIES	40										ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898	ENSGT00940000158655
Eutheria	ANCESTRAL SPECIES	5	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT00910000147942	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT00910000147942	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Glires	ANCESTRAL SPECIES	2	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Rodentia	ANCESTRAL SPECIES	2	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d.u #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898	ENSGT00940000158655
Hystricomorpha_b	ANCESTRAL SPECIES	45	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d.u #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898	ENSGT00940000158655
Long-tailed chinchilla	MODERN SPECIES	215	PLS1 (ENSCLAG00000001023) #7	ATR (ENSCLAG00000001152) #8	XRN1 (ENSCLAG00000001451) #9	GK5 (ENSCLAG00000003833) #10	TFDP2 (ENSCLAG00000003994) #11	ATP1B3 (ENSCLAG00000004199) #12	ENSCLAG00000004716 #13	RASA2 (ENSCLAG00000004874) #14	ZBTB38 (ENSCLAG00000005110) #15	PXYLP1 (ENSCLAG00000005226) #16	SPSB4 (ENSCLAG00000000956) #17	ENSCLAG00000001033 #18	TRIM42 (ENSCLAG00000001061) #19	CLSTN2 (ENSCLAG00000001170) #20	NMNAT3 (ENSCLAG00000001306) #21	RBP1 (ENSCLAG00000001341) #22	RBP2 (ENSCLAG00000002887) #23	COPB2 (ENSCLAG00000001365) #24	MRPS22 (ENSCLAG00000001705) #25
Degu	MODERN SPECIES	49														CLSTN2 (ENSODEG00000018107) #20	NMNAT3 (ENSODEG00000018060) #21	RBP1 (ENSODEG00000018109) #22	RBP2 (ENSODEG00000018110) #23	ENSODEG00000018148 #24	MRPS22 (ENSODEG00000018037) #25	ENSODEG00000020543	FOXL2 (ENSODEG00000020546)	ENSODEG00000018105	PIK3CB (ENSODEG00000018074)	FAIM (ENSODEG00000018052)	CEP70 (ENSODEG00000018071)	ESYT3 (ENSODEG00000018069)	MRAS (ENSODEG00000018151)	ENSODEG00000018119	ARMC8 (ENSODEG00000018221)	DBR1 (ENSODEG00000018178)	A4GNT (ENSODEG00000018100)
Guinea pig	MODERN SPECIES	8	ENSCPOG00000003458 #9	GK5 (ENSCPOG00000004732) #10	TFDP2 (ENSCPOG00000013203) #11	ENSCPOG00000003739 #12	GRK7 (ENSCPOG00000013262)	RNF7 (ENSCPOG00000036031)	ENSCPOG00000032259 #13	RASA2 (ENSCPOG00000014013) #14	ZBTB38 (ENSCPOG00000033797) #15	PXYLP1 (ENSCPOG00000035466) #16	SPSB4 (ENSCPOG00000033038) #17	SLC25A36 (ENSCPOG00000019810) #18	TRIM42 (ENSCPOG00000012108) #19	CLSTN2 (ENSCPOG00000003011) #20	NMNAT3 (ENSCPOG00000034365) #21	RBP1 (ENSCPOG00000033535) #22	RBP2 (ENSCPOG00000004129) #23	COPB2 (ENSCPOG00000014668) #24	MRPS22 (ENSCPOG00000034779) #25	ENSCPOG00000038087	PIK3CB (ENSCPOG00000000884)	FAIM (ENSCPOG00000019872)	CEP70 (ENSCPOG00000008134)	ESYT3 (ENSCPOG00000008125)	MRAS (ENSCPOG00000034906)	NME9 (ENSCPOG00000008114)	ARMC8 (ENSCPOG00000008104)	DBR1 (ENSCPOG00000006179)	A4GNT (ENSCPOG00000007671)	DZIP1L (ENSCPOG00000007662)	CLDN18 (ENSCPOG00000033360)
Naked mole-rat female	MODERN SPECIES	27	RASA2 (ENSHGLG00000012050) #14	ZBTB38 (ENSHGLG00000011669) #15	PXYLP1 (ENSHGLG00000014087) #16	ENSHGLG00000014428	SPSB4 (ENSHGLG00000013816) #17	ENSHGLG00000021114	ENSHGLG00000045813 #18	ENSHGLG00000041508	ENSHGLG00000013325 #19	ENSHGLG00000049519	ENSHGLG00000020964	ENSHGLG00000044512	ENSHGLG00000012472 #20	NMNAT3 (ENSHGLG00000012035) #21	ENSHGLG00000012202 ##18	ENSHGLG00000036615 #22	RBP2 (ENSHGLG00000011738) #23	COPB2 (ENSHGLG00000011244) #24	ENSHGLG00000010873 #25	PRR23C (ENSHGLG00000037355)	ENSHGLG00000040288	FOXL2 (ENSHGLG00000032272)	ENSHGLG00000010934	FAIM (ENSHGLG00000040397)	ENSHGLG00000014334	ESYT3 (ENSHGLG00000014239)	ENSHGLG00000014269	MRAS (ENSHGLG00000048838)	NME9 (ENSHGLG00000014916)	ENSHGLG00000014743	Dbr1 (ENSHGLG00000043172)
Sciuridae	ANCESTRAL SPECIES	26	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481.n	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Marmotini	ANCESTRAL SPECIES	25	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b.p #12	ENSGT00940000160511	ENSGT00940000155481.n	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.k	ENSGT00390000007772.l	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d
Alpin marmot	MODERN SPECIES	19	XRN1 (ENSMMMG00000017320) #9	ENSMMMG00000017439	GK5 (ENSMMMG00000017449) #10	TFDP2 (ENSMMMG00000017474) #11	ENSMMMG00000017532 #12	RNF7 (ENSMMMG00000017538)	ENSMMMG00000017545 #13	RASA2 (ENSMMMG00000017563) #14	ENSMMMG00000017581 #15	PXYLP1 (ENSMMMG00000017602) #16	ENSMMMG00000017610 #17	SLC25A36 (ENSMMMG00000017615) #18	TRIM42 (ENSMMMG00000017638) #19	CLSTN2 (ENSMMMG00000017668) #20	NMNAT3 (ENSMMMG00000017702) #21	RBP1 (ENSMMMG00000017717) #22	RBP2 (ENSMMMG00000017732) #23	COPB2 (ENSMMMG00000017742) #24	MRPS22 (ENSMMMG00000017768) #25	ENSMMMG00000017780	ENSMMMG00000017792	PIK3CB (ENSMMMG00000017795)	FAIM (ENSMMMG00000017805)	CEP70 (ENSMMMG00000017837)	ESYT3 (ENSMMMG00000017877)	MRAS (ENSMMMG00000017903)	NME9 (ENSMMMG00000017916)	ARMC8 (ENSMMMG00000017938)	DBR1 (ENSMMMG00000017981)	A4GNT (ENSMMMG00000018007)	DZIP1L (ENSMMMG00000018014)
Marmotini_b	ANCESTRAL SPECIES	46	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b.p #12	ENSGT00940000160511	ENSGT00940000155481.n	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.k	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Squirrel	MODERN SPECIES	140	GK5 (ENSSTOG00000013540) #10	TFDP2 (ENSSTOG00000013241) #11	ENSSTOG00000013235 #12	Grk7 (ENSSTOG00000021157)	RNF7 (ENSSTOG00000014964)	ENSSTOG00000031767 #13	RASA2 (ENSSTOG00000010098) #14	ZBTB38 (ENSSTOG00000025333) #15	PXYLP1 (ENSSTOG00000024318) #16	SPSB4 (ENSSTOG00000024795) #17	SLC25A36 (ENSSTOG00000022588) #18	ENSSTOG00000025591	TRIM42 (ENSSTOG00000020710) #19	CLSTN2 (ENSSTOG00000002012) #20	NMNAT3 (ENSSTOG00000005679) #21	RBP1 (ENSSTOG00000005673) #22	RBP2 (ENSSTOG00000027268) #23	COPB2 (ENSSTOG00000014231) #24	ENSSTOG00000024304	MRPS22 (ENSSTOG00000014224) #25	FOXL2 (ENSSTOG00000026426)	PIK3CB (ENSSTOG00000001257)	ENSSTOG00000022812	FAIM (ENSSTOG00000001255)	ENSSTOG00000034283	ESYT3 (ENSSTOG00000012541)	MRAS (ENSSTOG00000012534)	NME9 (ENSSTOG00000007197)	ARMC8 (ENSSTOG00000024081)	DBR1 (ENSSTOG00000007122)	A4GNT (ENSSTOG00000004427)
Arctic ground squirrel	MODERN SPECIES	35	GK5 (ENSUPAG00010008189) #10	TFDP2 (ENSUPAG00010008140) #11	ATP1B3 (ENSUPAG00010008116) #12	GRK7 (ENSUPAG00010008111)	ENSUPAG00010008104	ENSUPAG00010008087 #13	RASA2 (ENSUPAG00010008044) #14	ZBTB38 (ENSUPAG00010008043) #15	PXYLP1 (ENSUPAG00010008036) #16	SPSB4 (ENSUPAG00010008032) #17	SLC25A36 (ENSUPAG00010008022) #18	ENSUPAG00010008012	TRIM42 (ENSUPAG00010007998) #19	CLSTN2 (ENSUPAG00010007944) #20	NMNAT3 (ENSUPAG00010007888) #21	RBP1 (ENSUPAG00010007876) #22	RBP2 (ENSUPAG00010007849) #23	COPB2 (ENSUPAG00010007828) #24	MRPS22 (ENSUPAG00010007811) #25	ENSUPAG00010007807	ENSUPAG00010007805	FOXL2 (ENSUPAG00010007800)	PIK3CB (ENSUPAG00010007758)	FAIM (ENSUPAG00010007724)	CEP70 (ENSUPAG00010007665)	ESYT3 (ENSUPAG00010007626)	MRAS (ENSUPAG00010007612)	NME9 (ENSUPAG00010007598)	ARMC8 (ENSUPAG00010007507)	DBR1 (ENSUPAG00010007502)	A4GNT (ENSUPAG00010007500)
Eurasian red squirrel	MODERN SPECIES	1	ATR (ENSSVLG00005009179) #8	XRN1 (ENSSVLG00005009003) #9	GK5 (ENSSVLG00005008881) #10	ENSSVLG00005008823	TFDP2 (ENSSVLG00005008716) #11	ENSSVLG00005008685 #12	GRK7 (ENSSVLG00005008644)	RNF7 (ENSSVLG00005008607)	RASA2 (ENSSVLG00005008569) #14	ZBTB38 (ENSSVLG00005008552) #15	PXYLP1 (ENSSVLG00005008459) #16	SPSB4 (ENSSVLG00005008430) #17	TRIM42 (ENSSVLG00005008347) #19	CLSTN2 (ENSSVLG00005008254) #20	NMNAT3 (ENSSVLG00005008155) #21	RBP1 (ENSSVLG00005008104) #22	RBP2 (ENSSVLG00005008067) #23	COPB2 (ENSSVLG00005008031) #24	MRPS22 (ENSSVLG00005007938) #25	ENSSVLG00005007923	ENSSVLG00005007908	FOXL2 (ENSSVLG00005007808)	ENSSVLG00005007777	FAIM (ENSSVLG00005007710)	ENSSVLG00005007419	ESYT3 (ENSSVLG00005007298)	MRAS (ENSSVLG00005007241)	NME9 (ENSSVLG00005007212)	ARMC8 (ENSSVLG00005006598)	DBR1 (ENSSVLG00005006413)	ENSSVLG00005006364
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Kangaroo rat	MODERN SPECIES	510															Nmnat3 (ENSDORG00000002909) #21	Rbp1 (ENSDORG00000005282) #22	Rbp2 (ENSDORG00000016505) #23	Copb2 (ENSDORG00000016498) #24	Mrps22 (ENSDORG00000016496) #25	Pik3cb (ENSDORG00000006339)	ENSDORG00000006337	Cep70 (ENSDORG00000002571)	Mras (ENSDORG00000025032)	Armc8 (ENSDORG00000004357)	ENSDORG00000030044	ENSDORG00000024858	Cldn18 (ENSDORG00000026393)	Sox14 (ENSDORG00000025289)	Il20rb (ENSDORG00000012406)	Nck1 (ENSDORG00000014329)	Slc35g2 (ENSDORG00000029137)
Myomorpha	ANCESTRAL SPECIES	58	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075
Lesser Egyptian jerboa	MODERN SPECIES	103	Xrn1 (ENSJJAG00000010863) #9	Gk5 (ENSJJAG00000002736) #10	Tfdp2 (ENSJJAG00000000515) #11	ENSJJAG00000000084 #12	ENSJJAG00000023206	Gm28729 (ENSJJAG00000023069) #13	Rasa2 (ENSJJAG00000021872) #14	Zbtb38 (ENSJJAG00000020897) #15	Pxylp1 (ENSJJAG00000020595) #16	Spsb4 (ENSJJAG00000020473) #17	ENSJJAG00000020244 #18	Trim42 (ENSJJAG00000019829) #19	Clstn2 (ENSJJAG00000005508) #20	ENSJJAG00000000784	Nmnat3 (ENSJJAG00000000403) #21	Rbp1 (ENSJJAG00000022589) #22	Rbp2 (ENSJJAG00000022560) #23	Copb2 (ENSJJAG00000022143) #24	Mrps22 (ENSJJAG00000021884) #25	ENSJJAG00000021667
Muroidea	ANCESTRAL SPECIES	71	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.e	ENSGT00390000007772.f	ENSGT00940000162075	ENSGT00390000007364.a	ENSGT00940000154829.d	ENSGT00940000157522	ENSGT00390000007364.b	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.e	ENSGT00940000162075	ENSGT00390000007364.a	ENSGT00940000154829.d	ENSGT00940000157522	ENSGT00390000007364.b	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.e	ENSGT00940000162075	ENSGT00390000007364.a	ENSGT00940000154829.d	ENSGT00940000157522	ENSGT00390000007364.b	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481
Chinese hamster chok1gshd	MODERN SPECIES	284	Atr (ENSCGRG00001018561) #8	Xrn1 (ENSCGRG00001019411) #9	Gk5 (ENSCGRG00001021959) #10	Tfdp2 (ENSCGRG00001015207) #11	Atp1b3 (ENSCGRG00001014009) #12	ENSCGRG00001019917	Gm28729 (ENSCGRG00001023152) #13	Rasa2 (ENSCGRG00001008148) #14	Zbtb38 (ENSCGRG00001001498) #15	Pxylp1 (ENSCGRG00001018642) #16	Spsb4 (ENSCGRG00001018096) #17	Slc25a36 (ENSCGRG00001006109) #18	Trim42 (ENSCGRG00001002575) #19	Clstn2 (ENSCGRG00001020983) #20	Nmnat3 (ENSCGRG00001022660) #21	Rbp1 (ENSCGRG00001020893) #22	Rbp2 (ENSCGRG00001013198) #23	ENSCGRG00001007659	Copb2 (ENSCGRG00001000296) #24	Mrps22 (ENSCGRG00001010107) #25	ENSCGRG00001012181	ENSCGRG00001023558	ENSCGRG00001011938	Foxl2 (ENSCGRG00001004934)	Faim (ENSCGRG00001020799)	Gm1123 (ENSCGRG00001017449)	Pik3cb (ENSCGRG00001015103)	Faiml (ENSCGRG00001022096)	Cep70 (ENSCGRG00001015901)	Esyt3 (ENSCGRG00001005131)	Mras (ENSCGRG00001019182)
Golden Hamster	MODERN SPECIES	719	Pls1 (ENSMAUG00000014147) #7	Atr (ENSMAUG00000013539) #8	ENSMAUG00000014268 #9	Gk5 (ENSMAUG00000014487) #10	Tfdp2 (ENSMAUG00000016744) #11	ENSMAUG00000016180	Gm28729 (ENSMAUG00000018725) #13	Rasa2 (ENSMAUG00000006323) #14	Zbtb38 (ENSMAUG00000000765) #15	Pxylp1 (ENSMAUG00000001196) #16	Spsb4 (ENSMAUG00000001794) #17	Slc25a36 (ENSMAUG00000010528) ##18	Trim42 (ENSMAUG00000011369) #19	Clstn2 (ENSMAUG00000007746) #20	Nmnat3 (ENSMAUG00000014608) #21	Rbp1 (ENSMAUG00000000350) #22	Rbp2 (ENSMAUG00000001165) #23	Copb2 (ENSMAUG00000002677) #24	Mrps22 (ENSMAUG00000009906) #25	ENSMAUG00000005643
Cricetidae_B	ANCESTRAL SPECIES	23	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.e	ENSGT00940000162075	ENSGT00390000007364.a	ENSGT00940000154829.d	ENSGT00940000157522	ENSGT00390000007364.b	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481
Prairie vole	MODERN SPECIES	95	Xrn1 (ENSMOCG00000008665) #9	Gk5 (ENSMOCG00000000891) #10	Tfdp2 (ENSMOCG00000004728) #11	Atp1b3 (ENSMOCG00000007305) #12	ENSMOCG00000019098	Gm28729 (ENSMOCG00000015027) #13	Rasa2 (ENSMOCG00000000075) #14	Zbtb38 (ENSMOCG00000017136) #15	Pxylp1 (ENSMOCG00000009663) #16	Spsb4 (ENSMOCG00000012549) #17	Slc25a36 (ENSMOCG00000019824) #18	Trim42 (ENSMOCG00000001679) #19	Clstn2 (ENSMOCG00000001008) #20	ENSMOCG00000018441	Nmnat3 (ENSMOCG00000011048) #21	Rbp1 (ENSMOCG00000016179) #22	Rbp2 (ENSMOCG00000012766) #23	Copb2 (ENSMOCG00000014780) #24	Mrps22 (ENSMOCG00000020667) #25	ENSMOCG00000012631
Northern American deer mouse	MODERN SPECIES	20	Gk5 (ENSPEMG00000021213) #10	Tfdp2 (ENSPEMG00000020459) #11	ENSPEMG00000025894 #12	ENSPEMG00000020541	Gm28729 (ENSPEMG00000021490) #13	Rasa2 (ENSPEMG00000020689) #14	ENSPEMG00000020968	Zbtb38 (ENSPEMG00000021180) #15	ENSPEMG00000001384	Pxylp1 (ENSPEMG00000027594) #16	Spsb4 (ENSPEMG00000021848) #17	Slc25a36 (ENSPEMG00000029457) #18	Trim42 (ENSPEMG00000020887) #19	Clstn2 (ENSPEMG00000020916) #20	Nmnat3 (ENSPEMG00000020493) #21	Rbp1 (ENSPEMG00000020449) #22	Rbp2 (ENSPEMG00000016242) #23	Copb2 (ENSPEMG00000015558) #24	Mrps22 (ENSPEMG00000020399) #25	ENSPEMG00000025370	ENSPEMG00000026694	ENSPEMG00000025013	Foxl2 (ENSPEMG00000005563)	Faim (ENSPEMG00000015497)	Gm1123 (ENSPEMG00000008461)	Pik3cb (ENSPEMG00000021133)	ENSPEMG00000026638	Faiml (ENSPEMG00000020451)	Cep70 (ENSPEMG00000020889)	Esyt3 (ENSPEMG00000007500)	Mras (ENSPEMG00000024371)
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.e	ENSGT00390000007772.f	ENSGT01050000248377	ENSGT00940000162075	ENSGT00390000007364.a	ENSGT00940000154829.d	ENSGT00940000157522	ENSGT00390000007364.b	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486
Mus	ANCESTRAL SPECIES	4	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.e.h.a	ENSGT00390000007772.e.h.b	ENSGT00390000007772.e.g	ENSGT00390000007772.f	ENSGT01050000248377	ENSGT00940000162075	ENSGT00390000007364.a	ENSGT00940000154829.d	ENSGT00940000157522	ENSGT00390000007364.b	ENSGT00390000009029	ENSGT00940000161072
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000155481	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.e.h.a	ENSGT00390000007772.e.g	ENSGT00390000007772.f	ENSGT01050000248377	ENSGT00940000162075	ENSGT00390000007364.a	ENSGT00940000154829.d	ENSGT00940000157522	ENSGT00390000007364.b	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000155481.q.b	ENSGT00530000068221 #13	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.e.h.a	ENSGT00390000007772.e.h.b	ENSGT00390000007772.e.g	ENSGT00390000007772.f	ENSGT01050000248377	ENSGT00940000162075	ENSGT00390000007364.a	ENSGT00940000154829.d	ENSGT00940000157522	ENSGT00390000007364.b	ENSGT00390000009029	ENSGT00940000161072
Mouse	MODERN SPECIES	18	Atr (ENSMUSG00000032409) #8	Xrn1 (ENSMUSG00000032410) #9	Gk5 (ENSMUSG00000041440) #10	Tfdp2 (ENSMUSG00000032411) #11	Atp1b3 (ENSMUSG00000032412) #12	Rnf7 (ENSMUSG00000051234)	Gm28729 (ENSMUSG00000099564) #13	Rasa2 (ENSMUSG00000032413) #14	Zbtb38 (ENSMUSG00000040433) #15	Pxylp1 (ENSMUSG00000043587) #16	Spsb4 (ENSMUSG00000046997) #17	Slc25a36 (ENSMUSG00000032449) #18	Trim42 (ENSMUSG00000032451) #19	Clstn2 (ENSMUSG00000032452) #20	Nmnat3 (ENSMUSG00000032456) #21	Rbp1 (ENSMUSG00000046402) #22	Rbp2 (ENSMUSG00000032454) #23	Copb2 (ENSMUSG00000032458) #24	Mrps22 (ENSMUSG00000032459) #25	Prr23a1 (ENSMUSG00000091080)	Prr23a2 (ENSMUSG00000063058)	Prr23a3 (ENSMUSG00000090470)	7420426K07Rik (ENSMUSG00000074123)	Foxl2 (ENSMUSG00000050397)	Faim (ENSMUSG00000032463)	Gm1123 (ENSMUSG00000044860)	Pik3cb (ENSMUSG00000032462)	Faiml (ENSMUSG00000096316)	Cep70 (ENSMUSG00000056267)	Esyt3 (ENSMUSG00000037681)	Mras (ENSMUSG00000032470)
Mus_C	ANCESTRAL SPECIES	23	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.j #11	ENSGT01030000234579.A.b #12	ENSGT00940000155481.r	ENSGT00530000068221 #13	ENSGT00940000155481.q.b	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.e.h.a	ENSGT00390000007772.e.g	ENSGT00390000007772.f	ENSGT01050000248377	ENSGT00940000162075	ENSGT00390000007364.a	ENSGT00940000154829.d	ENSGT00940000157522	ENSGT00390000007364.b	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353
Steppe mouse	MODERN SPECIES	3378	ENSMSIG00000015688	Gm28729 (ENSMSIG00000015659) #13	Rasa2 (ENSMSIG00000015576) #14	Zbtb38 (ENSMSIG00000015564) #15	ENSMSIG00000015558	ENSMSIG00000015553	ENSMSIG00000015549	Pxylp1 (ENSMSIG00000015485) #16	ENSMSIG00000015465	Spsb4 (ENSMSIG00000015457) #17	Slc25a36 (ENSMSIG00000015406) #18	ENSMSIG00000015401	Trim42 (ENSMSIG00000015370) #19	Clstn2 (ENSMSIG00000015272) #20	Nmnat3 (ENSMSIG00000015178) #21	ENSMSIG00000015144 #22	Rbp2 (ENSMSIG00000015122) #23	ENSMSIG00000015116	Copb2 (ENSMSIG00000015074) #24	Mrps22 (ENSMSIG00000015058) #25	Prr23a1 (ENSMSIG00000015037)	Prr23a3 (ENSMSIG00000015032)	ENSMSIG00000015018	7420426K07Rik (ENSMSIG00000015012)	ENSMSIG00000014993	Foxl2 (ENSMSIG00000014987)	ENSMSIG00000014963	Gm1123 (ENSMSIG00000014935)	Pik3cb (ENSMSIG00000014858)	ENSMSIG00000014851	Cep70 (ENSMSIG00000014801)
spretus	MODERN SPECIES	18	Atr (MGP_SPRETEiJ_G0033677) #8	Xrn1 (MGP_SPRETEiJ_G0033678) #9	Gk5 (MGP_SPRETEiJ_G0033679) #10	Tfdp2 (MGP_SPRETEiJ_G0033680) #11	Atp1b3 (MGP_SPRETEiJ_G0033681) #12	Rnf7 (MGP_SPRETEiJ_G0033682)	Rasa2 (MGP_SPRETEiJ_G0033683) #14	Zbtb38 (MGP_SPRETEiJ_G0033684) #15	Pxylp1 (MGP_SPRETEiJ_G0033685) #16	Spsb4 (MGP_SPRETEiJ_G0033686) #17	Slc25a36 (MGP_SPRETEiJ_G0033687) #18	Trim42 (MGP_SPRETEiJ_G0033688) #19	Clstn2 (MGP_SPRETEiJ_G0033689) #20	Nmnat3 (MGP_SPRETEiJ_G0033690) #21	MGP_SPRETEiJ_G0033691	Rbp1 (MGP_SPRETEiJ_G0033692) #22	Rbp2 (MGP_SPRETEiJ_G0033693) #23	Copb2 (MGP_SPRETEiJ_G0033694) #24	Mrps22 (MGP_SPRETEiJ_G0033695) #25	MGP_SPRETEiJ_G0033696	MGP_SPRETEiJ_G0033697	MGP_SPRETEiJ_G0033698	7420426K07Rik (MGP_SPRETEiJ_G0033699)	Foxl2 (MGP_SPRETEiJ_G0033700)	Faim (MGP_SPRETEiJ_G0033701)	Pik3cb (MGP_SPRETEiJ_G0033702)	Faiml (MGP_SPRETEiJ_G0033703)	Cep70 (MGP_SPRETEiJ_G0033704)	Esyt3 (MGP_SPRETEiJ_G0033705)	Mras (MGP_SPRETEiJ_G0033706)	Armc8 (MGP_SPRETEiJ_G0033707)
Ryukyu mouse	MODERN SPECIES	18	Paqr9 (MGP_CAROLIEiJ_G0032531)	Trpc1 (MGP_CAROLIEiJ_G0032532)	MGP_CAROLIEiJ_G0032533 #7	MGP_CAROLIEiJ_G0032534 #8	Xrn1 (MGP_CAROLIEiJ_G0032535) #9	Tfdp2 (MGP_CAROLIEiJ_G0032537) #11	Atp1b3 (MGP_CAROLIEiJ_G0032538) #12	Rasa2 (MGP_CAROLIEiJ_G0032539) #14	Zbtb38 (MGP_CAROLIEiJ_G0032540) #15	Pxylp1 (MGP_CAROLIEiJ_G0032541) #16	Spsb4 (MGP_CAROLIEiJ_G0032542) #17	Slc25a36 (MGP_CAROLIEiJ_G0032543) #18	Trim42 (MGP_CAROLIEiJ_G0032544) #19	Clstn2 (MGP_CAROLIEiJ_G0032545) #20	Nmnat3 (MGP_CAROLIEiJ_G0032546) #21	Rbp1 (MGP_CAROLIEiJ_G0032547) #22	Rbp2 (MGP_CAROLIEiJ_G0032548) #23	Copb2 (MGP_CAROLIEiJ_G0032549) #24	Mrps22 (MGP_CAROLIEiJ_G0032550) #25	MGP_CAROLIEiJ_G0032551	MGP_CAROLIEiJ_G0032552	MGP_CAROLIEiJ_G0032553	7420426K07Rik (MGP_CAROLIEiJ_G0032554)	Foxl2 (MGP_CAROLIEiJ_G0032555)	Faim (MGP_CAROLIEiJ_G0032556)	Gm1123 (MGP_CAROLIEiJ_G0032557)	Pik3cb (MGP_CAROLIEiJ_G0032558)	Faiml (MGP_CAROLIEiJ_G0032559)	Cep70 (MGP_CAROLIEiJ_G0032560)	Esyt3 (MGP_CAROLIEiJ_G0032561)	Mras (MGP_CAROLIEiJ_G0032562)
Shrew mouse	MODERN SPECIES	1	Pls1 (MGP_PahariEiJ_G0015402) #7	Atr (MGP_PahariEiJ_G0015403) #8	Xrn1 (MGP_PahariEiJ_G0015404) #9	Gk5 (MGP_PahariEiJ_G0015405) #10	Tfdp2 (MGP_PahariEiJ_G0015406) #11	Atp1b3 (MGP_PahariEiJ_G0015407) #12	MGP_PahariEiJ_G0015408	Rasa2 (MGP_PahariEiJ_G0015409) #14	Zbtb38 (MGP_PahariEiJ_G0015410) #15	Pxylp1 (MGP_PahariEiJ_G0015411) #16	Spsb4 (MGP_PahariEiJ_G0015412) #17	Slc25a36 (MGP_PahariEiJ_G0015413) #18	Trim42 (MGP_PahariEiJ_G0015414) #19	Clstn2 (MGP_PahariEiJ_G0015415) #20	Nmnat3 (MGP_PahariEiJ_G0015416) #21	Rbp1 (MGP_PahariEiJ_G0015417) #22	Rbp2 (MGP_PahariEiJ_G0015418) #23	Copb2 (MGP_PahariEiJ_G0015419) #24	Mrps22 (MGP_PahariEiJ_G0015420) #25	Prr23a2 (MGP_PahariEiJ_G0015421)	MGP_PahariEiJ_G0015422	MGP_PahariEiJ_G0015423	MGP_PahariEiJ_G0015424	Foxl2 (MGP_PahariEiJ_G0015425)	Faim (MGP_PahariEiJ_G0015426)	Pik3cb (MGP_PahariEiJ_G0015427)	Faiml (MGP_PahariEiJ_G0015428)	MGP_PahariEiJ_G0015429	Esyt3 (MGP_PahariEiJ_G0015430)	Mras (MGP_PahariEiJ_G0015431)	Armc8 (MGP_PahariEiJ_G0015432)
Rat	MODERN SPECIES	18	AABR07071195.1 (ENSRNOG00000030296)	Atp1b3 (ENSRNOG00000011501) #12	AABR07067339.1 (ENSRNOG00000022456)	Rnf7 (ENSRNOG00000011663)	LOC102551788 (ENSRNOG00000053034) #13	Rasa2 (ENSRNOG00000011909) #14	Zbtb38 (ENSRNOG00000012386) #15	Pxylp1 (ENSRNOG00000012480) #16	Spsb4 (ENSRNOG00000012862) #17	AABR07071210.1 (ENSRNOG00000023330)	Slc25a36 (ENSRNOG00000013802) #18	Rps17 (ENSRNOG00000045885)	Trim42 (ENSRNOG00000048975) #19	Clstn2 (ENSRNOG00000043085) #20	Nmnat3 (ENSRNOG00000013585) #21	Rbp1 (ENSRNOG00000013794) #22	Rbp2 (ENSRNOG00000013932) #23	Copb2 (ENSRNOG00000060723) #24	Mrps22 (ENSRNOG00000047984) #25	Prr23a1 (ENSRNOG00000070252)	Prr23d2 (ENSRNOG00000067755)	Prr23a2 (ENSRNOG00000065507)	Prr23d1 (ENSRNOG00000061716)	ENSRNOG00000067226	Foxl2 (ENSRNOG00000017190)	Faim (ENSRNOG00000030069)	Cxadrl1 (ENSRNOG00000029029)	Pik3cb (ENSRNOG00000016384)	ENSRNOG00000067711	Faiml (ENSRNOG00000048802)	Cep70 (ENSRNOG00000022845)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	518																ENSNGAG00000005808 #22
Upper Galilee mountains blind mole rat	MODERN SPECIES	721																ENSNGAG00000000412 #22
Lagomorpha	ANCESTRAL SPECIES	6	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.i.a ##11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.c.a ##18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898	ENSGT00940000158655
Pika	DUPLICATION
Pika	MODERN SPECIES	356															ENSOPRG00000013991 #21	ENSOPRG00000013982 #22
Pika	MODERN SPECIES	10835																ENSOPRG00000012346 #22
Rabbit	MODERN SPECIES	5	PCOLCE2 (ENSOCUG00000013111)	TRPC1 (ENSOCUG00000017709)	PLS1 (ENSOCUG00000017700) #7	ATR (ENSOCUG00000001874) #8	XRN1 (ENSOCUG00000001861) #9	GK5 (ENSOCUG00000014237) #10	TFDP2 (ENSOCUG00000016458) ##11	ATP1B3 (ENSOCUG00000000338) #12	GRK7 (ENSOCUG00000000636)	RASA2 (ENSOCUG00000001219) #14	ZBTB38 (ENSOCUG00000003699) #15	PXYLP1 (ENSOCUG00000007855) #16	ENSOCUG00000002085 ##18	TRIM42 (ENSOCUG00000005488) #19	CLSTN2 (ENSOCUG00000002557) #20	ENSOCUG00000006264 #22	RBP2 (ENSOCUG00000008146) #23	COPB2 (ENSOCUG00000001120) #24	MRPS22 (ENSOCUG00000001119) #25	ENSOCUG00000039263	ENSOCUG00000021261	ENSOCUG00000009136	ENSOCUG00000022605	PIK3CB (ENSOCUG00000004899)	FAIM (ENSOCUG00000009724)	ENSOCUG00000009469	ESYT3 (ENSOCUG00000009461)	MRAS (ENSOCUG00000005929)	NME9 (ENSOCUG00000015151)	ARMC8 (ENSOCUG00000015134)	DBR1 (ENSOCUG00000015129)
Tree shrew	MODERN SPECIES	4509																ENSTBEG00000012099 #22	RBP2 (ENSTBEG00000012088) #23	COPB2 (ENSTBEG00000011889) #24
Primates	ANCESTRAL SPECIES	1	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.a	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.a	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Tarsier	MODERN SPECIES	5242															NMNAT3 (ENSTSYG00000032587) #21	ENSTSYG00000025444 #22	RBP2 (ENSTSYG00000010677) #23	COPB2 (ENSTSYG00000013014) #24	MRPS22 (ENSTSYG00000004839) #25	LCN15 (ENSTSYG00000010428)	LCN8 (ENSTSYG00000032382)	LCN6 (ENSTSYG00000004282)	LCN10 (ENSTSYG00000002625)
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481.u.b	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.a	ENSGT00410000029590	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d
Catarrhini	ANCESTRAL SPECIES	2	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.x #12	ENSGT00940000160511	ENSGT00940000155481.u.b	ENSGT01090000260040.b.b.b.b.a.a.a.a	ENSGT00940000155481.v	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00910000147082	ENSGT00910000147180	ENSGT00390000007772.a.d	ENSGT00390000007772.a.c.a	ENSGT00390000007772.a.c.b	ENSGT00410000029590	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353
Hominoidea	ANCESTRAL SPECIES	2	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.x #12	ENSGT00940000160511	ENSGT00940000155481.u.b	ENSGT01090000260040.b.b.b.b.a.a.a.a	ENSGT00940000155481.v	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00910000147082	ENSGT00910000147180	ENSGT00390000007772.a.d	ENSGT00390000007772.a.c.a	ENSGT00390000007772.a.c.b	ENSGT00410000029590	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353
Hominidae	ANCESTRAL SPECIES	2	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.x.a #12	ENSGT00940000160511	ENSGT00940000155481.u.b	ENSGT01090000260040.b.b.b.b.a.a.a.a	ENSGT00940000155481.v	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00910000147082	ENSGT00910000147180	ENSGT00390000007772.a.d	ENSGT00390000007772.a.c.a	ENSGT00390000007772.a.c.b	ENSGT00410000029590	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.x.a.a #12	ENSGT00940000160511	ENSGT00940000155481.u.b	ENSGT01090000260040.b.b.b.b.a.a.a.a	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00910000147082	ENSGT00910000147180	ENSGT00390000007772.a.d	ENSGT00390000007772.a.c.a	ENSGT00390000007772.a.c.b	ENSGT00410000029590	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.x.a.a #12	ENSGT00940000160511	ENSGT00940000155481.u.b	ENSGT01090000260040.b.b.b.b.a.a.a.a	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00910000147082	ENSGT00910000147180	ENSGT00390000007772.a.d	ENSGT00390000007772.a.c.a	ENSGT00390000007772.a.c.b	ENSGT00410000029590	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353
Pan	ANCESTRAL SPECIES	2	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.x.a.a #12	ENSGT00940000160511	ENSGT00940000155481.u.b	ENSGT01090000260040.b.b.b.b.a.a.a.a	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00910000147512	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00910000147082	ENSGT00910000147180	ENSGT00390000007772.a.d	ENSGT00390000007772.a.c.a	ENSGT00390000007772.a.c.b	ENSGT00410000029590	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486
Bonobo	MODERN SPECIES	16	GK5 (ENSPPAG00000041760) #10	TFDP2 (ENSPPAG00000031311) #11	ENSPPAG00000038971 #12	GRK7 (ENSPPAG00000037494)	RNF7 (ENSPPAG00000036147)	ENSPPAG00000042586	RASA2 (ENSPPAG00000036725) #14	PXYLP1 (ENSPPAG00000030848) #16	SPSB4 (ENSPPAG00000029910) #17	SLC25A36 (ENSPPAG00000030739) #18	TRIM42 (ENSPPAG00000028240) #19	ENSPPAG00000041953	CLSTN2 (ENSPPAG00000036614) #20	ENSPPAG00000044006	ENSPPAG00000038038 #21	RBP1 (ENSPPAG00000027809) #22	RBP2 (ENSPPAG00000031530) #23	COPB2 (ENSPPAG00000035821) #24	MRPS22 (ENSPPAG00000025143) #25	ENSPPAG00000027270	ENSPPAG00000003060	PRR23C (ENSPPAG00000039221)	PRR23B (ENSPPAG00000001951)	FOXL2NB (ENSPPAG00000011213)	PIK3CB (ENSPPAG00000031755)	FAIM (ENSPPAG00000036904)	CEP70 (ENSPPAG00000028074)	ESYT3 (ENSPPAG00000018513)	MRAS (ENSPPAG00000036377)	NME9 (ENSPPAG00000041110)	ARMC8 (ENSPPAG00000035612)
Chimpanzee	MODERN SPECIES	16	TFDP2 (ENSPTRG00000015479) #11	ATP1B3 (ENSPTRG00000015476) #12	GRK7 (ENSPTRG00000052431)	RNF7 (ENSPTRG00000039248)	ENSPTRG00000046551	RASA2 (ENSPTRG00000015472) #14	ZBTB38 (ENSPTRG00000030108) #15	PXYLP1 (ENSPTRG00000015469) #16	SPSB4 (ENSPTRG00000015468) #17	SLC25A36 (ENSPTRG00000015467) #18	TRIM42 (ENSPTRG00000015465) #19	ENSPTRG00000044651	CLSTN2 (ENSPTRG00000015463) #20	ENSPTRG00000045045	NMNAT3 (ENSPTRG00000015462) #21	RBP1 (ENSPTRG00000015461) #22	RBP2 (ENSPTRG00000015460) #23	COPB2 (ENSPTRG00000015459) #24	MRPS22 (ENSPTRG00000015458) #25	ENSPTRG00000045823	ENSPTRG00000049861	PRR23C (ENSPTRG00000030111)	PRR23B (ENSPTRG00000015455)	PRR23A (ENSPTRG00000040873)	FOXL2NB (ENSPTRG00000048064)	PIK3CB (ENSPTRG00000015452)	FAIM (ENSPTRG00000015449)	CEP70 (ENSPTRG00000015448)	ESYT3 (ENSPTRG00000015446)	MRAS (ENSPTRG00000015445)	NME9 (ENSPTRG00000015444)
Human	MODERN SPECIES	15	ATR (ENSG00000175054) #8	XRN1 (ENSG00000114127) #9	GK5 (ENSG00000175066) #10	TFDP2 (ENSG00000114126) #11	ATP1B3 (ENSG00000069849) #12	GRK7 (ENSG00000114124)	RNF7 (ENSG00000114125)	RASA2 (ENSG00000155903) #14	ZBTB38 (ENSG00000177311) #15	PXYLP1 (ENSG00000155893) #16	SPSB4 (ENSG00000175093) #17	SLC25A36 (ENSG00000114120) #18	TRIM42 (ENSG00000155890) #19	CLSTN2 (ENSG00000158258) #20	NMNAT3 (ENSG00000163864) #21	RBP1 (ENSG00000114115) #22	RBP2 (ENSG00000114113) #23	COPB2 (ENSG00000184432) #24	PRR23C (ENSG00000233701)	PRR23B (ENSG00000184814)	MRPS22 (ENSG00000175110) #25	PRR23A (ENSG00000206260)	FOXL2NB (ENSG00000206262)	FOXL2 (ENSG00000183770)	PIK3CB (ENSG00000051382)	FAIM (ENSG00000158234)	CEP70 (ENSG00000114107)	ESYT3 (ENSG00000158220)	MRAS (ENSG00000158186)	NME9 (ENSG00000181322)	ARMC8 (ENSG00000114098)
Gorilla	MODERN SPECIES	16	XRN1 (ENSGGOG00000008047) #9	GK5 (ENSGGOG00000003657) #10	TFDP2 (ENSGGOG00000007878) #11	ATP1B3 (ENSGGOG00000027111) #12	GRK7 (ENSGGOG00000013256)	RNF7 (ENSGGOG00000001829)	ENSGGOG00000037216	RASA2 (ENSGGOG00000023738) #14	PXYLP1 (ENSGGOG00000001732) #16	SPSB4 (ENSGGOG00000011522) #17	SLC25A36 (ENSGGOG00000024554) #18	TRIM42 (ENSGGOG00000010587) #19	CLSTN2 (ENSGGOG00000007929) #20	ENSGGOG00000014226	NMNAT3 (ENSGGOG00000012306) #21	RBP1 (ENSGGOG00000012301) #22	RBP2 (ENSGGOG00000010274) #23	ENSGGOG00000005780	ENSGGOG00000039588	MRPS22 (ENSGGOG00000014871) #25	PRR23C (ENSGGOG00000043485)	PRR23B (ENSGGOG00000036512)	PRR23A (ENSGGOG00000038502)	FOXL2NB (ENSGGOG00000042930)	FOXL2 (ENSGGOG00000024690)	PIK3CB (ENSGGOG00000009579)	FAIM (ENSGGOG00000011492)	CEP70 (ENSGGOG00000010759)	ESYT3 (ENSGGOG00000003902)	ENSGGOG00000043506	MRAS (ENSGGOG00000011092)
Orangutan	MODERN SPECIES	16	GK5 (ENSPPYG00000014171) #10	TFDP2 (ENSPPYG00000014170) #11	ATP1B3 (ENSPPYG00000014169) #12	ENSPPYG00000033921	GRK7 (ENSPPYG00000014168)	ENSPPYG00000031196	RASA2 (ENSPPYG00000014165) #14	ENSPPYG00000040016	ZBTB38 (ENSPPYG00000031145) #15	PXYLP1 (ENSPPYG00000014163) #16	SPSB4 (ENSPPYG00000014162) #17	SLC25A36 (ENSPPYG00000040461) #18	TRIM42 (ENSPPYG00000014160) #19	CLSTN2 (ENSPPYG00000014159) #20	ENSPPYG00000014158 #21	RBP1 (ENSPPYG00000014157) #22	RBP2 (ENSPPYG00000014156) #23	COPB2 (ENSPPYG00000014155) #24	MRPS22 (ENSPPYG00000036169) #25	PRR23C (ENSPPYG00000014153)	PRR23B (ENSPPYG00000014152)	PRR23A (ENSPPYG00000014151)	FOXL2NB (ENSPPYG00000038270)	FOXL2 (ENSPPYG00000014148)	PIK3CB (ENSPPYG00000014147)	FAIM (ENSPPYG00000014145)	CEP70 (ENSPPYG00000014144)	ESYT3 (ENSPPYG00000014143)	MRAS (ENSPPYG00000035081)	NME9 (ENSPPYG00000014141)	ARMC8 (ENSPPYG00000014140)
Gibbon	MODERN SPECIES	23	GRK7 (ENSNLEG00000004658)	RNF7 (ENSNLEG00000033882)	RASA2 (ENSNLEG00000004575) #14	ENSNLEG00000036178	ZBTB38 (ENSNLEG00000004569) #15	PXYLP1 (ENSNLEG00000004544) #16	ENSNLEG00000034016	ENSNLEG00000033738	SPSB4 (ENSNLEG00000004536) #17	SLC25A36 (ENSNLEG00000004520) #18	TRIM42 (ENSNLEG00000004507) #19	ENSNLEG00000034232	CLSTN2 (ENSNLEG00000004476) #20	NMNAT3 (ENSNLEG00000004471) #21	ENSNLEG00000030080	RBP1 (ENSNLEG00000004461) #22	RBP2 (ENSNLEG00000004446) #23	COPB2 (ENSNLEG00000004381) #24	ENSNLEG00000035567 #25	ENSNLEG00000036042	ENSNLEG00000004379	PIK3CB (ENSNLEG00000004334)	FAIM (ENSNLEG00000004331)	CEP70 (ENSNLEG00000004252)	ESYT3 (ENSNLEG00000004209)	MRAS (ENSNLEG00000004197)	NME9 (ENSNLEG00000004183)	ARMC8 (ENSNLEG00000004156)	DBR1 (ENSNLEG00000032263)	A4GNT (ENSNLEG00000004148)	DZIP1L (ENSNLEG00000004142)
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT01000000214434.A #10	ENSGT00510000046985.i	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.x #12	ENSGT00940000160511	ENSGT00940000155481.u.b	ENSGT01090000260040.b.b.b.b.a.a.a.a	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095.s #25	ENSGT00910000147082	ENSGT00910000147180	ENSGT00390000007772.a.d	ENSGT00390000007772.a.c.a	ENSGT00390000007772.a.c.b	ENSGT00410000029590	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000156225.d	ENSGT01000000214434.A #10	ENSGT00510000046985.i	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.x #12	ENSGT00940000160511	ENSGT00940000155481.u.b	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095.s #25	ENSGT00910000147082	ENSGT00910000147180	ENSGT00390000007772.a.d	ENSGT00390000007772.a.c.a	ENSGT00390000007772.a.c.b	ENSGT00410000029590	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00510000046985.i	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.x #12	ENSGT00940000160511	ENSGT00940000155481.u.b	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00910000147447	ENSGT00910000147512	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095.s #25	ENSGT00910000147082	ENSGT00910000147180	ENSGT00390000007772.a.d	ENSGT00390000007772.a.c.b	ENSGT00410000029590	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486
Macaca	ANCESTRAL SPECIES	5	ENSGT00510000046985.i	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.x #12	ENSGT00940000160511	ENSGT00940000155481.u.b	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00910000147447	ENSGT00910000147512	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095.s #25	ENSGT00910000147082	ENSGT00910000147180	ENSGT00390000007772.a.d	ENSGT00390000007772.a.c.b	ENSGT00410000029590	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486
Pig-tailed macaque	MODERN SPECIES	443	TFDP2 (ENSMNEG00000039976) #11	ATP1B3 (ENSMNEG00000035434) #12	GRK7 (ENSMNEG00000032651)	RNF7 (ENSMNEG00000027808)	ENSMNEG00000039256	RASA2 (ENSMNEG00000034452) #14	PXYLP1 (ENSMNEG00000041720) #16	SPSB4 (ENSMNEG00000028739) #17	ENSMNEG00000042747	SLC25A36 (ENSMNEG00000040083) #18	TRIM42 (ENSMNEG00000045001) #19	ENSMNEG00000022589	ENSMNEG00000010088	CLSTN2 (ENSMNEG00000038192) #20	NMNAT3 (ENSMNEG00000034277) #21	RBP1 (ENSMNEG00000042493) #22	ENSMNEG00000039456	RBP2 (ENSMNEG00000040865) #23	COPB2 (ENSMNEG00000039119) #24	MRPS22 (ENSMNEG00000034447) #25	ENSMNEG00000006917	ENSMNEG00000022093	FOXL2NB (ENSMNEG00000029429)	PIK3CB (ENSMNEG00000001166)	FAIM (ENSMNEG00000027770)	CEP70 (ENSMNEG00000038099)	ENSMNEG00000007834	ESYT3 (ENSMNEG00000037439)	MRAS (ENSMNEG00000029621)	NME9 (ENSMNEG00000032513)	ARMC8 (ENSMNEG00000040451)
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.x #12	ENSGT00940000160511	ENSGT00940000155481.u.b	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095.s #25	ENSGT00910000147082	ENSGT00910000147180	ENSGT00390000007772.a.d	ENSGT00390000007772.a.c.b	ENSGT00410000029590	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486
Crab-eating macaque	MODERN SPECIES	11	ATR (ENSMFAG00000001151) #8	XRN1 (ENSMFAG00000032599) #9	GK5 (ENSMFAG00000039065) #10	TFDP2 (ENSMFAG00000040035) #11	ATP1B3 (ENSMFAG00000040649) #12	GRK7 (ENSMFAG00000001701)	RNF7 (ENSMFAG00000051836)	ENSMFAG00000030557 #14	ZBTB38 (ENSMFAG00000021549) #15	PXYLP1 (ENSMFAG00000045625) #16	ENSMFAG00000042001	ENSMFAG00000031013 #18	TRIM42 (ENSMFAG00000014452) #19	CLSTN2 (ENSMFAG00000044664) #20	NMNAT3 (ENSMFAG00000044228) #21	RBP1 (ENSMFAG00000031658) #22	RBP2 (ENSMFAG00000039548) #23	COPB2 (ENSMFAG00000030752) #24	MRPS22 (ENSMFAG00000035834) #25	ENSMFAG00000030216	ENSMFAG00000030211	PRR23A (ENSMFAG00000064336)	FOXL2NB (ENSMFAG00000002086)	PIK3CB (ENSMFAG00000002622)	FAIM (ENSMFAG00000038121)	CEP70 (ENSMFAG00000038255)	ESYT3 (ENSMFAG00000038263)	MRAS (ENSMFAG00000040143)	NME9 (ENSMFAG00000032445)	ARMC8 (ENSMFAG00000036859)	DBR1 (ENSMFAG00000043642)
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.x #12	ENSGT00940000160511	ENSGT00940000155481.u.b	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00910000147447	ENSGT00910000147512	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095.s #25	ENSGT00910000147082	ENSGT00910000147180	ENSGT00390000007772.a.d	ENSGT00410000029590	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481
Olive baboon	MODERN SPECIES	11	TFDP2 (ENSPANG00000005825) #11	ATP1B3 (ENSPANG00000016869) #12	ENSPANG00000051223	GRK7 (ENSPANG00000026216)	RNF7 (ENSPANG00000008716)	RASA2 (ENSPANG00000010060) #14	ZBTB38 (ENSPANG00000018989) #15	PXYLP1 (ENSPANG00000018293) #16	SPSB4 (ENSPANG00000020402) #17	SLC25A36 (ENSPANG00000004802) #18	ENSPANG00000050186	ENSPANG00000046237	TRIM42 (ENSPANG00000007233) #19	CLSTN2 (ENSPANG00000017988) #20	NMNAT3 (ENSPANG00000005203) #21	RBP1 (ENSPANG00000036167) #22	RBP2 (ENSPANG00000010059) #23	COPB2 (ENSPANG00000007050) #24	MRPS22 (ENSPANG00000021219) #25	ENSPANG00000031215	PRR23C (ENSPANG00000048299)	ENSPANG00000046989	FOXL2NB (ENSPANG00000034278)	FOXL2 (ENSPANG00000045964)	ENSPANG00000045868	ENSPANG00000043388	PIK3CB (ENSPANG00000009667)	FAIM (ENSPANG00000025522)	CEP70 (ENSPANG00000017682)	ESYT3 (ENSPANG00000020305)	MRAS (ENSPANG00000007201)
Cercopithecinae_d	ANCESTRAL SPECIES	16	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.x #12	ENSGT00940000160511	ENSGT00940000155481.u.b	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00910000147447	ENSGT00910000147512	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095.s #25	ENSGT00910000147082	ENSGT00910000147180	ENSGT00410000029590	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d
Drill	MODERN SPECIES	1275												ENSMLEG00000026445	ENSMLEG00000025710	CLSTN2 (ENSMLEG00000039476) #20	NMNAT3 (ENSMLEG00000028630) #21	RBP1 (ENSMLEG00000003157) #22	RBP2 (ENSMLEG00000032315) #23	ENSMLEG00000036901	ENSMLEG00000032481 #25	ENSMLEG00000027483	ENSMLEG00000027538	FOXL2NB (ENSMLEG00000028660)	PIK3CB (ENSMLEG00000038221)	FAIM (ENSMLEG00000028702)	ENSMLEG00000038824
Sooty mangabey	MODERN SPECIES	656	GK5 (ENSCATG00000033849) #10	TFDP2 (ENSCATG00000035711) #11	ATP1B3 (ENSCATG00000040498) #12	GRK7 (ENSCATG00000018025)	RNF7 (ENSCATG00000042225)	RASA2 (ENSCATG00000033775) #14	ZBTB38 (ENSCATG00000005041) #15	PXYLP1 (ENSCATG00000036840) #16	SPSB4 (ENSCATG00000038455) #17	SLC25A36 (ENSCATG00000031849) #18	TRIM42 (ENSCATG00000029341) #19	ENSCATG00000005820	ENSCATG00000045166	CLSTN2 (ENSCATG00000036787) #20	NMNAT3 (ENSCATG00000031087) #21	RBP1 (ENSCATG00000018519) #22	RBP2 (ENSCATG00000002512) #23	COPB2 (ENSCATG00000038728) #24	ENSCATG00000044414 #25	ENSCATG00000008634	ENSCATG00000040710	FOXL2NB (ENSCATG00000036502)	PIK3CB (ENSCATG00000035624)	FAIM (ENSCATG00000045167)	CEP70 (ENSCATG00000013493)	ESYT3 (ENSCATG00000042735)	MRAS (ENSCATG00000043690)	NME9 (ENSCATG00000037084)	ARMC8 (ENSCATG00000029356)	DBR1 (ENSCATG00000032054)	A4GNT (ENSCATG00000029281)
Vervet Monkey	MODERN SPECIES	6	PLS1 (ENSCSAG00000011290) #7	ATR (ENSCSAG00000011281) #8	XRN1 (ENSCSAG00000011265) #9	GK5 (ENSCSAG00000011252) #10	TFDP2 (ENSCSAG00000011244) #11	ATP1B3 (ENSCSAG00000011237) #12	GRK7 (ENSCSAG00000011224)	RNF7 (ENSCSAG00000011205)	RASA2 (ENSCSAG00000011201) #14	ZBTB38 (ENSCSAG00000018910) #15	PXYLP1 (ENSCSAG00000011192) #16	SPSB4 (ENSCSAG00000011185) #17	TRIM42 (ENSCSAG00000011184) #19	CLSTN2 (ENSCSAG00000011174) #20	NMNAT3 (ENSCSAG00000011165) #21	RBP1 (ENSCSAG00000011160) #22	RBP2 (ENSCSAG00000011158) #23	COPB2 (ENSCSAG00000011151) #24	MRPS22 (ENSCSAG00000011142) #25	ENSCSAG00000011134	PRR23C (ENSCSAG00000018911)	PRR23B (ENSCSAG00000018913)	PRR23A (ENSCSAG00000018915)	FOXL2 (ENSCSAG00000018916)	PIK3CB (ENSCSAG00000011123)	FAIM (ENSCSAG00000011113)	CEP70 (ENSCSAG00000011085)	ESYT3 (ENSCSAG00000011024)	MRAS (ENSCSAG00000011005)	NME9 (ENSCSAG00000010999)	ARMC8 (ENSCSAG00000010992)
Rhinopithecus	ANCESTRAL SPECIES	110	ENSGT00940000156225.d	ENSGT01000000214434.A #10	ENSGT00510000046985.i	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.x #12	ENSGT00940000160511	ENSGT00940000155481.u.b.b	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095.s #25	ENSGT00910000147180	ENSGT00410000029590	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d
Golden snub-nosed monkey	MODERN SPECIES	3101														CLSTN2 (ENSRROG00000040345) #20	NMNAT3 (ENSRROG00000012934) #21	RBP1 (ENSRROG00000040810) #22	RBP2 (ENSRROG00000030089) #23
Black snub-nosed monkey	MODERN SPECIES	1652												SLC25A36 (ENSRBIG00000042542) #18	TRIM42 (ENSRBIG00000039037) #19	CLSTN2 (ENSRBIG00000035431) #20	NMNAT3 (ENSRBIG00000038555) #21	RBP1 (ENSRBIG00000035559) #22	RBP2 (ENSRBIG00000038535) #23	COPB2 (ENSRBIG00000043802) #24	ENSRBIG00000035558 #25
Platyrrhini	ANCESTRAL SPECIES	22	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.y.a #12	ENSGT00940000160511	ENSGT00940000155481.u.a	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.a	ENSGT00410000029590	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d
Mas night monkey	MODERN SPECIES	1078													TRIM42 (ENSANAG00000034190) #19	CLSTN2 (ENSANAG00000035482) #20	NMNAT3 (ENSANAG00000032065) #21	RBP1 (ENSANAG00000038363) #22	RBP2 (ENSANAG00000025156) #23	COPB2 (ENSANAG00000038330) #24	MRPS22 (ENSANAG00000021429) #25	ENSANAG00000021661	FOXL2NB (ENSANAG00000037330)	FOXL2 (ENSANAG00000037365)	PIK3CB (ENSANAG00000021563)	FAIM (ENSANAG00000022702)	CEP70 (ENSANAG00000032614)	ENSANAG00000037314	ESYT3 (ENSANAG00000030996)	ENSANAG00000031729	MRAS (ENSANAG00000033185)	NME9 (ENSANAG00000021464)	ARMC8 (ENSANAG00000023313)
Cebidae	ANCESTRAL SPECIES	22	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.y.a #12	ENSGT00940000160511	ENSGT00940000155481.u.a	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.a.e	ENSGT00410000029590	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d
Cebidae_a	ANCESTRAL SPECIES	12	ENSGT00950000183097.a.b.k #7	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.z #12	ENSGT00940000160511	ENSGT00940000155481.u.a	ENSGT00940000158201 #14	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.a.e	ENSGT00410000029590	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Bolivian squirrel monkey	MODERN SPECIES	204	ATR (ENSSBOG00000031886) #8	XRN1 (ENSSBOG00000029561) #9	GK5 (ENSSBOG00000010917) #10	TFDP2 (ENSSBOG00000029977) #11	ENSSBOG00000005873	ATP1B3 (ENSSBOG00000025166) #12	GRK7 (ENSSBOG00000029455)	ENSSBOG00000020609	RASA2 (ENSSBOG00000015504) #14	PXYLP1 (ENSSBOG00000030966) #16	SPSB4 (ENSSBOG00000027901) #17	SLC25A36 (ENSSBOG00000033900) #18	TRIM42 (ENSSBOG00000024063) #19	CLSTN2 (ENSSBOG00000028495) #20	NMNAT3 (ENSSBOG00000021646) #21	RBP1 (ENSSBOG00000029287) #22	RBP2 (ENSSBOG00000026602) #23	COPB2 (ENSSBOG00000029777) #24	MRPS22 (ENSSBOG00000006732) #25	ENSSBOG00000023833	FOXL2NB (ENSSBOG00000027764)
Capuchin	MODERN SPECIES	30	ATR (ENSCCAG00000037606) #8	XRN1 (ENSCCAG00000034800) #9	GK5 (ENSCCAG00000028734) #10	ENSCCAG00000032480	TFDP2 (ENSCCAG00000026731) #11	ENSCCAG00000034843 #12	GRK7 (ENSCCAG00000025796)	RNF7 (ENSCCAG00000020264)	RASA2 (ENSCCAG00000037845) #14	PXYLP1 (ENSCCAG00000037463) #16	SPSB4 (ENSCCAG00000032923) #17	SLC25A36 (ENSCCAG00000036553) #18	TRIM42 (ENSCCAG00000033251) #19	CLSTN2 (ENSCCAG00000029042) #20	NMNAT3 (ENSCCAG00000036866) #21	RBP1 (ENSCCAG00000037002) #22	RBP2 (ENSCCAG00000034429) #23	COPB2 (ENSCCAG00000022997) #24	MRPS22 (ENSCCAG00000031308) #25	ENSCCAG00000001067	FOXL2NB (ENSCCAG00000029666)	PIK3CB (ENSCCAG00000028623)	ENSCCAG00000030899	ENSCCAG00000024754	CEP70 (ENSCCAG00000031960)	ESYT3 (ENSCCAG00000028893)
Marmoset	MODERN SPECIES	8	ENSCJAG00000001950 #11	ENSCJAG00000001981 #12	GRK7 (ENSCJAG00000001987)	ENSCJAG00000082838	RASA2 (ENSCJAG00000001994) #14	ENSCJAG00000076787	ZBTB38 (ENSCJAG00000048397) #15	ENSCJAG00000079923	PXYLP1 (ENSCJAG00000002072) #16	SPSB4 (ENSCJAG00000002091) #17	SLC25A36 (ENSCJAG00000002092) #18	TRIM42 (ENSCJAG00000002126) #19	CLSTN2 (ENSCJAG00000002137) #20	NMNAT3 (ENSCJAG00000041699) #21	ENSCJAG00000079234	ENSCJAG00000085868 #22	RBP2 (ENSCJAG00000002188) #23	COPB2 (ENSCJAG00000002200) #24	MRPS22 (ENSCJAG00000002236) #25	ENSCJAG00000046249	ENSCJAG00000002248	FOXL2NB (ENSCJAG00000002249)	FOXL2 (ENSCJAG00000041357)	PIK3CB (ENSCJAG00000002252)	ENSCJAG00000076544	FAIM (ENSCJAG00000002299)	CEP70 (ENSCJAG00000002315)	ESYT3 (ENSCJAG00000002351)	MRAS (ENSCJAG00000052904)	ENSCJAG00000070308	NME9 (ENSCJAG00000002391)
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.d #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.a	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Lemuriformes	ANCESTRAL SPECIES	30	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909.d #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.a	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Lemuriformes_a	ANCESTRAL SPECIES	53	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000153988.B.f	ENSGT00940000157909.d #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.a	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00390000012818.o.a.a.b	ENSGT00510000047981.d	ENSGT00940000160898
Greater bamboo lemur	MODERN SPECIES	413				ATP1B3 (ENSPSMG00000020824) #12	GRK7 (ENSPSMG00000020813)	RNF7 (ENSPSMG00000020807)	RASA2 (ENSPSMG00000020773) #14	ZBTB38 (ENSPSMG00000020710) #15	PXYLP1 (ENSPSMG00000020682) #16	SPSB4 (ENSPSMG00000020563) #17	ENSPSMG00000020562	SLC25A36 (ENSPSMG00000020544) #18	TRIM42 (ENSPSMG00000020469) #19	CLSTN2 (ENSPSMG00000020453) #20	NMNAT3 (ENSPSMG00000020415) #21	RBP1 (ENSPSMG00000020385) #22	RBP2 (ENSPSMG00000020371) #23	ENSPSMG00000020368	COPB2 (ENSPSMG00000020353) #24	MRPS22 (ENSPSMG00000020288) #25	ENSPSMG00000020236	ENSPSMG00000020225	PIK3CB (ENSPSMG00000020194)	FAIM (ENSPSMG00000020153)	CEP70 (ENSPSMG00000020133)	ESYT3 (ENSPSMG00000020044)	MRAS (ENSPSMG00000020026)	ARMC8 (ENSPSMG00000020012)	DBR1 (ENSPSMG00000019955)	ENSPSMG00000019934	A4GNT (ENSPSMG00000019927)
Coquerels sifaka	MODERN SPECIES	123											SLC25A36 (ENSPCOG00000000490) #18	TRIM42 (ENSPCOG00000027829) #19	ENSPCOG00000016353	CLSTN2 (ENSPCOG00000024936) #20	NMNAT3 (ENSPCOG00000021175) #21	RBP1 (ENSPCOG00000017114) #22	RBP2 (ENSPCOG00000017331) #23	COPB2 (ENSPCOG00000017801) #24	MRPS22 (ENSPCOG00000003593) #25	ENSPCOG00000022269	ENSPCOG00000012505	PIK3CB (ENSPCOG00000019996)	FAIM (ENSPCOG00000018872)	CEP70 (ENSPCOG00000014192)	ESYT3 (ENSPCOG00000003756)	MRAS (ENSPCOG00000023517)	NME9 (ENSPCOG00000017987)	ARMC8 (ENSPCOG00000027310)	DBR1 (ENSPCOG00000016894)	ENSPCOG00000028436	A4GNT (ENSPCOG00000014835)
Mouse lemur	MODERN SPECIES		XRN1 (ENSMICG00000048948) #9	GK5 (ENSMICG00000049424) #10	TFDP2 (ENSMICG00000049186) #11	ENSMICG00000049520	ATP1B3 (ENSMICG00000049313) #12	GRK7 (ENSMICG00000049413)	RNF7 (ENSMICG00000049320)	RASA2 (ENSMICG00000049339) #14	ZBTB38 (ENSMICG00000049344) #15	PXYLP1 (ENSMICG00000048945) #16	SPSB4 (ENSMICG00000049106) #17	ENSMICG00000048906 #18	TRIM42 (ENSMICG00000049317) #19	CLSTN2 (ENSMICG00000049019) #20	ENSMICG00000048995 #21	RBP1 (ENSMICG00000048900) #22	OTOL1 (ENSMICG00000049331)	SPTSSB (ENSMICG00000048968)	NMD3 (ENSMICG00000049196)	ENSMICG00000049361	PPM1L (ENSMICG00000049405)	ENSMICG00000049189	ENSMICG00000049540	ARL14 (ENSMICG00000049117)	KPNA4 (ENSMICG00000049332)	ENSMICG00000049206	ENSMICG00000049365	TRIM59 (ENSMICG00000049309)	ENSMICG00000049085	ENSMICG00000048378	C3orf80 (ENSMICG00000049375)
Bushbaby	MODERN SPECIES	147	ATR (ENSOGAG00000000171) #8	XRN1 (ENSOGAG00000000170) #9	GK5 (ENSOGAG00000000169) #10	TFDP2 (ENSOGAG00000000168) #11	ATP1B3 (ENSOGAG00000008662) #12	GRK7 (ENSOGAG00000009576)	RNF7 (ENSOGAG00000008659)	RASA2 (ENSOGAG00000002470) #14	ZBTB38 (ENSOGAG00000009394) #15	PXYLP1 (ENSOGAG00000009393) #16	SPSB4 (ENSOGAG00000027600) #17	SLC25A36 (ENSOGAG00000003805) #18	TRIM42 (ENSOGAG00000009994) #19	CLSTN2 (ENSOGAG00000017033) #20	NMNAT3 (ENSOGAG00000004263) #21	RBP1 (ENSOGAG00000004262) #22	ENSOGAG00000033121	RBP2 (ENSOGAG00000010271) #23	COPB2 (ENSOGAG00000010265) #24	MRPS22 (ENSOGAG00000010261) #25	ENSOGAG00000024655	ENSOGAG00000031233	ENSOGAG00000015899	ENSOGAG00000033392	PIK3CB (ENSOGAG00000004047)	FAIM (ENSOGAG00000004045)	CEP70 (ENSOGAG00000004043)	ESYT3 (ENSOGAG00000004036)	ENSOGAG00000028546	MRAS (ENSOGAG00000004034)	NME9 (ENSOGAG00000004032)
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT00910000147942	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000159675 #22
Hedgehog	MODERN SPECIES	5676																RBP1 (ENSEEUG00000005367) #22
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT00910000147942	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT00910000147942	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.eb	ENSGT00390000007772.db	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d
Suina	ANCESTRAL SPECIES	1	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.eb	ENSGT00390000007772.db.a	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d
Chacoan peccary	MODERN SPECIES	943								RASA2 (ENSCWAG00000011597) #14	ZBTB38 (ENSCWAG00000011564) #15	PXYLP1 (ENSCWAG00000011368) #16	SPSB4 (ENSCWAG00000011320) #17	SLC25A36 (ENSCWAG00000014021) #18	TRIM42 (ENSCWAG00000013961) #19	CLSTN2 (ENSCWAG00000013840) #20	NMNAT3 (ENSCWAG00000013679) #21	RBP1 (ENSCWAG00000013607) #22	ENSCWAG00000013587	RBP2 (ENSCWAG00000013512) #23	COPB2 (ENSCWAG00000013414) #24	MRPS22 (ENSCWAG00000013353) #25	ENSCWAG00000013334	ENSCWAG00000013326	FOXL2 (ENSCWAG00000013310)	PIK3CB (ENSCWAG00000013095)	FAIM (ENSCWAG00000013000)	CEP70 (ENSCWAG00000012773)
Pig	MODERN SPECIES	4	ENSSSCG00000058234	ENSSSCG00000036302	TFDP2 (ENSSSCG00000037647) #11	ENSSSCG00000011676 #12	GRK7 (ENSSSCG00000011675)	RNF7 (ENSSSCG00000029774)	ENSSSCG00000041863	RASA2 (ENSSSCG00000011672) #14	ZBTB38 (ENSSSCG00000022073) #15	PXYLP1 (ENSSSCG00000011670) #16	SPSB4 (ENSSSCG00000034369) #17	SLC25A36 (ENSSSCG00000036855) #18	TRIM42 (ENSSSCG00000011668) #19	CLSTN2 (ENSSSCG00000011666) #20	NMNAT3 (ENSSSCG00000031142) #21	RBP1 (ENSSSCG00000011664) #22	RBP2 (ENSSSCG00000011663) #23	COPB2 (ENSSSCG00000011662) #24	MRPS22 (ENSSSCG00000035771) #25	ENSSSCG00000049490	ENSSSCG00000057835	ENSSSCG00000056463	ENSSSCG00000046938	ENSSSCG00000053353	ENSSSCG00000060407	ENSSSCG00000059936	ENSSSCG00000055839	ENSSSCG00000054708	ENSSSCG00000037344	PIK3CB (ENSSSCG00000021203)	FAIM (ENSSSCG00000023814)
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.eb	ENSGT00390000007772.db	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d
Camelidae	ANCESTRAL SPECIES		ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00390000006095 #25	ENSGT00390000007772.eb	ENSGT00390000007772.db	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898	ENSGT00940000158655
Arabian camel	MODERN SPECIES		ATR (ENSCDRG00005010671) #8	XRN1 (ENSCDRG00005009918) #9	GK5 (ENSCDRG00005009714) #10	TFDP2 (ENSCDRG00005009411) #11	ATP1B3 (ENSCDRG00005009339) #12	GRK7 (ENSCDRG00005009268)	RNF7 (ENSCDRG00005009202)	RASA2 (ENSCDRG00005008964) #14	ZBTB38 (ENSCDRG00005008946) #15	PXYLP1 (ENSCDRG00005008608) #16	SPSB4 (ENSCDRG00005008558) #17	SLC25A36 (ENSCDRG00005008462) #18	TRIM42 (ENSCDRG00005008390) #19	CLSTN2 (ENSCDRG00005008241) #20	NMNAT3 (ENSCDRG00005008148) #21	RBP1 (ENSCDRG00005008110) #22	RBP2 (ENSCDRG00005008064) #23	ENSCDRG00005007972	MRPS22 (ENSCDRG00005007928) #25	ENSCDRG00005007910	ENSCDRG00005007870	ENSCDRG00005007675	PIK3CB (ENSCDRG00005007566)	FAIM (ENSCDRG00005007514)	CEP70 (ENSCDRG00005007301)	ESYT3 (ENSCDRG00005007177)	MRAS (ENSCDRG00005007126)	NME9 (ENSCDRG00005007084)	ARMC8 (ENSCDRG00005006350)	DBR1 (ENSCDRG00005006286)	A4GNT (ENSCDRG00005006264)
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT00990000212240	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.eb	ENSGT00390000007772.db.d	ENSGT00390000007772.db.c	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481
Pecora	ANCESTRAL SPECIES	8	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT00990000212240	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT01030000234579.A.b.eb #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.eb	ENSGT00390000007772.db.d	ENSGT00390000007772.db.c.c	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481
Yarkand deer	MODERN SPECIES	10	TFDP2 (ENSCHYG00000024201) #11	ENSCHYG00000024409	ENSCHYG00000024429	ENSCHYG00000024452 #12	GRK7 (ENSCHYG00000024502)	RNF7 (ENSCHYG00000024540)	RASA2 (ENSCHYG00000024595) #14	ZBTB38 (ENSCHYG00000024909) #15	PXYLP1 (ENSCHYG00000024922) #16	SPSB4 (ENSCHYG00000024998) #17	SLC25A36 (ENSCHYG00000025011) #18	ENSCHYG00000025156	TRIM42 (ENSCHYG00000025165) #19	CLSTN2 (ENSCHYG00000025188) #20	ENSCHYG00000025250 #21	RBP1 (ENSCHYG00000025267) #22	RBP2 (ENSCHYG00000025312) #23	COPB2 (ENSCHYG00000025389) #24	MRPS22 (ENSCHYG00000025593) #25	ENSCHYG00000025659	ENSCHYG00000025687	ENSCHYG00000025695	ENSCHYG00000025710	ENSCHYG00000025718	ENSCHYG00000013518	ENSCHYG00000013546	ENSCHYG00000013608	ENSCHYG00000013636	ENSCHYG00000013658	ENSCHYG00000013688	FAIM (ENSCHYG00000013706)
Percora_a	ANCESTRAL SPECIES	7	ENSGT00940000157909 #11	ENSGT00990000212240	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT01030000234579.A.b.eb #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT00910000144184.r	ENSGT01030000234629.C #17	ENSGT00940000154369.d.a #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.eb	ENSGT00390000007772.db.d	ENSGT00390000007772.db.c.c	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481
Siberian musk deer	MODERN SPECIES	1183	GK5 (ENSMMSG00000006474) #10	TFDP2 (ENSMMSG00000006589) #11	ENSMMSG00000006733	ENSMMSG00000006756	ENSMMSG00000006771 #12	GRK7 (ENSMMSG00000006798)	RNF7 (ENSMMSG00000006837)	RASA2 (ENSMMSG00000006905) #14	PXYLP1 (ENSMMSG00000006978) #16	ENSMMSG00000007071	SPSB4 (ENSMMSG00000007102) #17	SLC25A36 (ENSMMSG00000007138) #18	TRIM42 (ENSMMSG00000007340) #19	CLSTN2 (ENSMMSG00000007374) #20	NMNAT3 (ENSMMSG00000007475) #21	RBP1 (ENSMMSG00000007523) #22	RBP2 (ENSMMSG00000007546) #23	COPB2 (ENSMMSG00000007584) #24	MRPS22 (ENSMMSG00000007623) #25	ENSMMSG00000007660	ENSMMSG00000007679	ENSMMSG00000007696	ENSMMSG00000007747	PIK3CB (ENSMMSG00000007788)	FAIM (ENSMMSG00000007872)	ENSMMSG00000007946	ESYT3 (ENSMMSG00000008214)	MRAS (ENSMMSG00000008307)	NME9 (ENSMMSG00000008348)	ARMC8 (ENSMMSG00000008740)	ENSMMSG00000009776
Bovidae	ANCESTRAL SPECIES	9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT00910000147942.a	ENSGT01030000234579.A.b.eb #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT00910000144184.r	ENSGT01030000234629.C #17	ENSGT00940000154369.d.a #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.eb	ENSGT00390000007772.db.d	ENSGT00390000007772.db.c.c	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481
Caprinae	ANCESTRAL SPECIES	8	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b.eb.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d.a #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.eb	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898	ENSGT00940000158655
Goat	MODERN SPECIES		GK5 (ENSCHIG00000017817) #10	TFDP2 (ENSCHIG00000009621) #11	ENSCHIG00000017443	ENSCHIG00000027094 #12	GRK7 (ENSCHIG00000012094)	RNF7 (ENSCHIG00000013336)	RASA2 (ENSCHIG00000002573) #14	ZBTB38 (ENSCHIG00000010094) #15	PXYLP1 (ENSCHIG00000025350) #16	ENSCHIG00000020425	SPSB4 (ENSCHIG00000008629) #17	ENSCHIG00000022243 #18	TRIM42 (ENSCHIG00000015242) #19	CLSTN2 (ENSCHIG00000022240) #20	NMNAT3 (ENSCHIG00000026289) #21	RBP1 (ENSCHIG00000020909) #22	RBP2 (ENSCHIG00000027152) #23	COPB2 (ENSCHIG00000022228) #24	MRPS22 (ENSCHIG00000027042) #25	ENSCHIG00000015101	PIK3CB (ENSCHIG00000019728)	ENSCHIG00000016904	FAIM (ENSCHIG00000017833)	CEP70 (ENSCHIG00000002428)	ESYT3 (ENSCHIG00000015996)	MRAS (ENSCHIG00000025837)	NME9 (ENSCHIG00000014298)	ARMC8 (ENSCHIG00000001594)	DBR1 (ENSCHIG00000026937)	A4GNT (ENSCHIG00000017659)	DZIP1L (ENSCHIG00000015630)
Rambouillet Sheep	MODERN SPECIES		TFDP2 (ENSOARG00020007870) #11	ENSOARG00020008237	ENSOARG00020008278	ATP1B3 (ENSOARG00020008329) #12	GRK7 (ENSOARG00020008372)	RNF7 (ENSOARG00020008414)	RASA2 (ENSOARG00020008530) #14	ZBTB38 (ENSOARG00020008974) #15	PXYLP1 (ENSOARG00020008991) #16	SPSB4 (ENSOARG00020009123) #17	SLC25A36 (ENSOARG00020009173) #18	ENSOARG00020009460	TRIM42 (ENSOARG00020009485) #19	CLSTN2 (ENSOARG00020009535) #20	NMNAT3 (ENSOARG00020009718) #21	RBP1 (ENSOARG00020010135) #22	RBP2 (ENSOARG00020010203) #23	COPB2 (ENSOARG00020010262) #24	MRPS22 (ENSOARG00020010500) #25	ENSOARG00020010569	ENSOARG00020010633	ENSOARG00020010654	FOXL2 (ENSOARG00020010684)	ENSOARG00020010746	PIK3CB (ENSOARG00020010835)	FAIM (ENSOARG00020011065)	CEP70 (ENSOARG00020011206)	ESYT3 (ENSOARG00020011695)	MRAS (ENSOARG00020012177)	NME9 (ENSOARG00020012267)	ARMC8 (ENSOARG00020012965)
Bovinae	ANCESTRAL SPECIES	6	ENSGT00940000157909 #11	ENSGT00910000147942.a	ENSGT01030000234579.A.b.eb #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000171658.a	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT00910000144184.r	ENSGT01030000234629.C #17	ENSGT00940000154369.d.a #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.eb	ENSGT00390000007772.db.d.h	ENSGT00390000007772.db.d.g	ENSGT00390000007772.db.c.d	ENSGT00390000007772.db.c.c	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00390000017606.a.a.j.k.a	ENSGT00940000161072	ENSGT00940000156353
American bison	DUPLICATION
American bison	MODERN SPECIES	2943															NFIA (ENSBBBG00000020188)	ENSBBBG00000005451 #22	TM2D1 (ENSBBBG00000020219)	PATJ (ENSBBBG00000020417)	ENSBBBG00000000683	ENSBBBG00000000675	ENSBBBG00000000661	KANK4 (ENSBBBG00000000615)	USP1 (ENSBBBG00000000583)	ANGPTL3 (ENSBBBG00000000578)	DOCK7 (ENSBBBG00000020989)	ATG4C (ENSBBBG00000021066)	ALG6 (ENSBBBG00000021124)	ENSBBBG00000021141	EFCAB7 (ENSBBBG00000021157)	PGM1 (ENSBBBG00000021191)
American bison	MODERN SPECIES	3298	ENSBBBG00000004088	ENSBBBG00000016579	ATP1B3 (ENSBBBG00000016573) #12	GRK7 (ENSBBBG00000016561)	RNF7 (ENSBBBG00000004080)	ENSBBBG00000016540	RASA2 (ENSBBBG00000016517) #14	ZBTB38 (ENSBBBG00000016426) #15	PXYLP1 (ENSBBBG00000016417) #16	ENSBBBG00000004054	SPSB4 (ENSBBBG00000008334) #17	ENSBBBG00000016376 #18	TRIM42 (ENSBBBG00000016347) #19	CLSTN2 (ENSBBBG00000016341) #20	NMNAT3 (ENSBBBG00000016315) #21	ENSBBBG00000016274 #22	RBP2 (ENSBBBG00000016260) #23	COPB2 (ENSBBBG00000016249) #24	MRPS22 (ENSBBBG00000016196) #25	ENSBBBG00000016176	ENSBBBG00000016174	ENSBBBG00000004011	ENSBBBG00000016164	ENSBBBG00000016159	FOXL2 (ENSBBBG00000016154)	PIK3CB (ENSBBBG00000016142)	FAIM (ENSBBBG00000003997)	CEP70 (ENSBBBG00000016053)	ENSBBBG00000015970	ESYT3 (ENSBBBG00000015961)	MRAS (ENSBBBG00000015926)
Bos	ANCESTRAL SPECIES	7	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT00910000147942.a	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000171658.a	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT00910000144184.r	ENSGT01030000234629.C #17	ENSGT00940000154369.d.a #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.eb	ENSGT00390000007772.db.d.h	ENSGT00390000007772.db.d.g	ENSGT00390000007772.db.c.d	ENSGT00390000007772.db.c.c	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00390000017606.a.a.j.k.a	ENSGT00940000161072	ENSGT00940000156353
Bos_a	ANCESTRAL SPECIES	5	ENSGT00940000157909 #11	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT01030000234579.A.b.eb #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000171658.a	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT00910000144184.r	ENSGT01030000234629.C #17	ENSGT00940000154369.c.a ##18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d.a #24	ENSGT00390000006095 #25	ENSGT00390000007772.eb	ENSGT00390000007772.db.d.h	ENSGT00390000007772.db.d.g	ENSGT00390000007772.db.c.d	ENSGT00390000007772.db.c.c	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00390000017606.a.a.j.k.a	ENSGT00940000161072	ENSGT00940000156353
Domestic yak	MODERN SPECIES	22	C8A (ENSBGRG00000000553)	C8B (ENSBGRG00000000424)	DAB1 (ENSBGRG00000000294)	OMA1 (ENSBGRG00000000253)	ENSBGRG00000000232	TACSTD2 (ENSBGRG00000024919)	MYSM1 (ENSBGRG00000024641)	JUN (ENSBGRG00000024565)	ENSBGRG00000024541	FGGY (ENSBGRG00000024465) ##10	HOOK1 (ENSBGRG00000024297)	ENSBGRG00000024031	ENSBGRG00000023881	C1orf87 (ENSBGRG00000023807)	NFIA (ENSBGRG00000023142)	ENSBGRG00000023087 #22	TM2D1 (ENSBGRG00000022969)	ENSBGRG00000022922	ENSBGRG00000022909	PATJ (ENSBGRG00000022311)	ENSBGRG00000022263	ENSBGRG00000022229	ENSBGRG00000022209	ENSBGRG00000022077	USP1 (ENSBGRG00000021990)	ANGPTL3 (ENSBGRG00000021909)	DOCK7 (ENSBGRG00000018618)	ATG4C (ENSBGRG00000018342)	ALG6 (ENSBGRG00000018183)	ENSBGRG00000018100	EFCAB7 (ENSBGRG00000017077)
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	392											ENSBMUG00000000601	ENSBMUG00000000623	C1orf87 (ENSBMUG00000000659)	NFIA (ENSBMUG00000000809)	ENSBMUG00000000847	ENSBMUG00000000848 #22	TM2D1 (ENSBMUG00000000863)	PATJ (ENSBMUG00000001186)	ENSBMUG00000001377	ENSBMUG00000001387	ENSBMUG00000001402	KANK4 (ENSBMUG00000001446)
Wild yak	MODERN SPECIES	1642													ENSBMUG00000021737	CLSTN2 (ENSBMUG00000021759) #20	NMNAT3 (ENSBMUG00000021794) #21	ENSBMUG00000021826 #22	RBP2 (ENSBMUG00000021839) #23	ENSBMUG00000021887 #24	MRPS22 (ENSBMUG00000021906) #25
Bos_b	ANCESTRAL SPECIES	5	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT01030000234579.A.b.eb #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT00910000144184.r	ENSGT01030000234629.C #17	ENSGT00940000154369.d.a #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.eb	ENSGT00390000007772.db.d.h	ENSGT00390000007772.db.d.g	ENSGT00390000007772.db.c.c	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.a.b.b.a.a.a.a.b	ENSGT00390000009029	ENSGT00390000017606.a.a.j.k.a	ENSGT00940000161072	ENSGT00940000156353
Hybrid Bos Indicus	MODERN SPECIES	22	C8B (ENSBIXG00005003029)	DAB1 (ENSBIXG00005018812)	OMA1 (ENSBIXG00005000059)	TACSTD2 (ENSBIXG00005018922)	MYSM1 (ENSBIXG00005019087)	JUN (ENSBIXG00005019120)	ENSBIXG00005019148	ENSBIXG00005019169	FGGY (ENSBIXG00005019237) ##10	HOOK1 (ENSBIXG00005003139)	ENSBIXG00005019340	ENSBIXG00005019472	C1orf87 (ENSBIXG00005019556)	ENSBIXG00005019575	NFIA (ENSBIXG00005020048)	ENSBIXG00005020134 #22	TM2D1 (ENSBIXG00005020166)	ENSBIXG00005020179	PATJ (ENSBIXG00005003424)	ENSBIXG00005020451	ENSBIXG00005020474	KANK4 (ENSBIXG00005020554)	USP1 (ENSBIXG00005020600)	ANGPTL3 (ENSBIXG00005020614)	DOCK7 (ENSBIXG00005020995)	ATG4C (ENSBIXG00005003580)	ENSBIXG00005021222	ALG6 (ENSBIXG00005021259)	ENSBIXG00005021312	EFCAB7 (ENSBIXG00005003600)	PGM1 (ENSBIXG00005021422)
Cow	DUPLICATION
Cow	MODERN SPECIES		TFDP2 (ENSBTAG00000006222) #11	ENSBTAG00000019007	ATP1B3 (ENSBTAG00000014140) #12	GRK7 (ENSBTAG00000021886)	RNF7 (ENSBTAG00000002185)	RASA2 (ENSBTAG00000015413) #14	ZBTB38 (ENSBTAG00000040061) #15	PXYLP1 (ENSBTAG00000050763) #16	ENSBTAG00000050470	SPSB4 (ENSBTAG00000009115) #17	SLC25A36 (ENSBTAG00000015310) #18	ENSBTAG00000052041	TRIM42 (ENSBTAG00000018346) #19	CLSTN2 (ENSBTAG00000008714) #20	NMNAT3 (ENSBTAG00000051936) #21	RBP1 (ENSBTAG00000020028) #22	RBP2 (ENSBTAG00000015056) #23	COPB2 (ENSBTAG00000014843) #24	MRPS22 (ENSBTAG00000047608) #25	ENSBTAG00000046040	ENSBTAG00000046738	ENSBTAG00000051220	ENSBTAG00000048724	ENSBTAG00000045637	FOXL2 (ENSBTAG00000031277)	PIK3CB (ENSBTAG00000006909)	FAIM (ENSBTAG00000023426)	ENSBTAG00000048975	CEP70 (ENSBTAG00000018538)	ENSBTAG00000026861	ESYT3 (ENSBTAG00000008111)
Cow	MODERN SPECIES	22	C8A (ENSBTAG00000003774)	C8B (ENSBTAG00000003775)	DAB1 (ENSBTAG00000013802)	OMA1 (ENSBTAG00000017326)	TACSTD2 (ENSBTAG00000004381)	MYSM1 (ENSBTAG00000013961)	JUN (ENSBTAG00000004037)	FGGY (ENSBTAG00000030669) ##10	HOOK1 (ENSBTAG00000030671)	CYP2J30 (ENSBTAG00000051030)	ENSBTAG00000053766	ENSBTAG00000051904	ENSBTAG00000051542	C3H1orf87 (ENSBTAG00000009481)	NFIA (ENSBTAG00000000074)	ENSBTAG00000009769 #22	TM2D1 (ENSBTAG00000017161)	ENSBTAG00000046720	PATJ (ENSBTAG00000021975)	ENSBTAG00000047830	KANK4 (ENSBTAG00000014382)	USP1 (ENSBTAG00000020451)	ANGPTL3 (ENSBTAG00000021386)	DOCK7 (ENSBTAG00000019877)	ATG4C (ENSBTAG00000010124)	FOXD3 (ENSBTAG00000008501)	ALG6 (ENSBTAG00000030706)	ITGB3BP (ENSBTAG00000030710)	EFCAB7 (ENSBTAG00000002600)	PGM1 (ENSBTAG00000019011)	ROR1 (ENSBTAG00000012312)
Cetacea	ANCESTRAL SPECIES	10	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT00990000212240	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.eb	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Blue whale	MODERN SPECIES	15	GK5 (ENSBMSG00010002815) #10	TFDP2 (ENSBMSG00010002750) #11	ENSBMSG00010002724	ENSBMSG00010002711 #12	GRK7 (ENSBMSG00010002693)	RNF7 (ENSBMSG00010002685)	RASA2 (ENSBMSG00010002664) #14	ZBTB38 (ENSBMSG00010002653) #15	PXYLP1 (ENSBMSG00010002600) #16	SPSB4 (ENSBMSG00010002565) #17	ENSBMSG00010002556	SLC25A36 (ENSBMSG00010002537) #18	TRIM42 (ENSBMSG00010002516) #19	CLSTN2 (ENSBMSG00010002499) #20	NMNAT3 (ENSBMSG00010002472) #21	RBP1 (ENSBMSG00010002450) #22	RBP2 (ENSBMSG00010002440) #23	ENSBMSG00010002432	COPB2 (ENSBMSG00010002410) #24	MRPS22 (ENSBMSG00010002393) #25	ENSBMSG00010002375	ENSBMSG00010002363	ENSBMSG00010002354	ENSBMSG00010002332	ENSBMSG00010002319	ENSBMSG00010002310	FOXL2 (ENSBMSG00010002293)	PIK3CB (ENSBMSG00010002220)	FAIM (ENSBMSG00010002168)	CEP70 (ENSBMSG00010002089)	ENSBMSG00010002060
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT00990000212240	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898	ENSGT00940000158655
Sperm whale	MODERN SPECIES		SOX14 (ENSPCTG00005000162)	ENSPCTG00005000161	CLDN18 (ENSPCTG00005000160)	DZIP1L (ENSPCTG00005000159)	A4GNT (ENSPCTG00005000158)	DBR1 (ENSPCTG00005000157)	ARMC8 (ENSPCTG00005000156)	NME9 (ENSPCTG00005000155)	MRAS (ENSPCTG00005000154)	ENSPCTG00005000153	ESYT3 (ENSPCTG00005000152)	CEP70 (ENSPCTG00005000150)	FAIM (ENSPCTG00005000149)	PIK3CB (ENSPCTG00005000147)	NMNAT3 (ENSPCTG00005000146) #21	RBP1 (ENSPCTG00005000145) #22	RBP2 (ENSPCTG00005000144) #23	COPB2 (ENSPCTG00005000143) #24	MRPS22 (ENSPCTG00005000142) #25	ENSPCTG00005000141	ENSPCTG00005000140	ENSPCTG00005000138	ENSPCTG00005000137	ENSPCTG00005000136	ENSPCTG00005000135	FOXL2 (ENSPCTG00005000133)	CLSTN2 (ENSPCTG00005000131) #20	TRIM42 (ENSPCTG00005000130) #19	SLC25A36 (ENSPCTG00005000128) #18	SPSB4 (ENSPCTG00005000126) #17	PXYLP1 (ENSPCTG00005000125) #16
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT00990000212240	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898	ENSGT00940000158655
Dolphin	MODERN SPECIES	4701															NMNAT3 (ENSTTRG00000004841) #21	RBP1 (ENSTTRG00000004839) #22
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT00510000049510.j	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00940000154937.m	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00950000182878.b.a.c.a.a.b.o.a.a.b.a	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Vaquita	MODERN SPECIES	15	ENSPSNG00000008620	ENSPSNG00000008603	TFDP2 (ENSPSNG00000008314) #11	ENSPSNG00000008244	ATP1B3 (ENSPSNG00000008203) #12	GRK7 (ENSPSNG00000008164)	RNF7 (ENSPSNG00000008117)	RASA2 (ENSPSNG00000007185) #14	ZBTB38 (ENSPSNG00000006604) #15	SPSB4 (ENSPSNG00000006561) #17	SLC25A36 (ENSPSNG00000006521) #18	TRIM42 (ENSPSNG00000006478) #19	CLSTN2 (ENSPSNG00000006409) #20	ENSPSNG00000006348	ENSPSNG00000015860 #21	RBP1 (ENSPSNG00000015785) #22	RBP2 (ENSPSNG00000015711) #23	COPB2 (ENSPSNG00000015632) #24	MRPS22 (ENSPSNG00000015570) #25	ENSPSNG00000015393	ENSPSNG00000015372	ENSPSNG00000015359	ENSPSNG00000015338	FOXL2 (ENSPSNG00000015301)	ENSPSNG00000015240	PIK3CB (ENSPSNG00000015153)	FAIM (ENSPSNG00000015025)	CEP70 (ENSPSNG00000014649)	ESYT3 (ENSPSNG00000014544)	MRAS (ENSPSNG00000014460)	NME9 (ENSPSNG00000014044)
Monodontidae	ANCESTRAL SPECIES	23	ENSGT00940000157909 #11	ENSGT00990000212240	ENSGT00510000049510.j	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00940000154937.m	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.db.c.a	ENSGT00390000007772.db.c.b	ENSGT00940000162075	ENSGT00950000182878.b.a.c.a.a.b.o.a.a.b.a	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481
Narwhal	MODERN SPECIES	297	TFDP2 (ENSMMNG00015001329) #11	ENSMMNG00015001532	ATP1B3 (ENSMMNG00015001546) #12	ENSMMNG00015001573	GRK7 (ENSMMNG00015001595)	RNF7 (ENSMMNG00015001619)	RASA2 (ENSMMNG00015001646) #14	ZBTB38 (ENSMMNG00015001678) #15	PXYLP1 (ENSMMNG00015001696) #16	SPSB4 (ENSMMNG00015001726) #17	ENSMMNG00015001759 #18	TRIM42 (ENSMMNG00015001882) #19	CLSTN2 (ENSMMNG00015001908) #20	ENSMMNG00015001951	NMNAT3 (ENSMMNG00015002017) #21	RBP1 (ENSMMNG00015002084) #22	RBP2 (ENSMMNG00015002106) #23	COPB2 (ENSMMNG00015002153) #24	MRPS22 (ENSMMNG00015002233) #25	ENSMMNG00015002255	ENSMMNG00015002267	ENSMMNG00015002276	FOXL2 (ENSMMNG00015002300)	PIK3CB (ENSMMNG00015002338)	FAIM (ENSMMNG00015002383)	CEP70 (ENSMMNG00015002438)	ESYT3 (ENSMMNG00015002550)	ENSMMNG00015002641	MRAS (ENSMMNG00015002691)	NME9 (ENSMMNG00015002708)	ARMC8 (ENSMMNG00015002849)
Beluga whale	MODERN SPECIES	18	TFDP2 (ENSDLEG00000001700) #11	ENSDLEG00000001620	ATP1B3 (ENSDLEG00000001587) #12	GRK7 (ENSDLEG00000001565)	RNF7 (ENSDLEG00000001551)	ENSDLEG00000001540	RASA2 (ENSDLEG00000001473) #14	ZBTB38 (ENSDLEG00000001456) #15	PXYLP1 (ENSDLEG00000001445) #16	SPSB4 (ENSDLEG00000001437) #17	SLC25A36 (ENSDLEG00000001393) #18	TRIM42 (ENSDLEG00000001364) #19	CLSTN2 (ENSDLEG00000001185) #20	ENSDLEG00000001151	NMNAT3 (ENSDLEG00000001136) #21	RBP1 (ENSDLEG00000001122) #22	RBP2 (ENSDLEG00000001101) #23	COPB2 (ENSDLEG00000001067) #24	MRPS22 (ENSDLEG00000001044) #25	ENSDLEG00000001031	ENSDLEG00000001020	ENSDLEG00000001013	ENSDLEG00000001003	FOXL2 (ENSDLEG00000000988)	ENSDLEG00000000978	PIK3CB (ENSDLEG00000000922)	FAIM (ENSDLEG00000000884)	CEP70 (ENSDLEG00000000832)	ESYT3 (ENSDLEG00000000661)	MRAS (ENSDLEG00000000612)	ENSDLEG00000000582
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Carnivora	ANCESTRAL SPECIES	10	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Felidae	ANCESTRAL SPECIES	9	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Panthera	ANCESTRAL SPECIES	12	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT01020000230346.C.g.a	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Panthera_a	ANCESTRAL SPECIES	17	ENSGT01000000214434.A #10	ENSGT00940000156502.e.b	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT01020000230346.C.g.a	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.`b.b	ENSGT00390000007772.ab	ENSGT00390000007772.`b.a	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481
lion	MODERN SPECIES	9	GK5 (ENSPLOG00000015158) #10	ENSPLOG00000015121	ENSPLOG00000015088	TFDP2 (ENSPLOG00000014941) #11	ATP1B3 (ENSPLOG00000014889) #12	GRK7 (ENSPLOG00000014829)	RNF7 (ENSPLOG00000014770)	RASA2 (ENSPLOG00000014718) #14	ZBTB38 (ENSPLOG00000014693) #15	PXYLP1 (ENSPLOG00000014550) #16	SPSB4 (ENSPLOG00000014502) #17	SLC25A36 (ENSPLOG00000014443) #18	TRIM42 (ENSPLOG00000014367) #19	CLSTN2 (ENSPLOG00000014213) #20	NMNAT3 (ENSPLOG00000014115) #21	RBP1 (ENSPLOG00000014001) #22	RBP2 (ENSPLOG00000013963) #23	COPB2 (ENSPLOG00000013716) #24	MRPS22 (ENSPLOG00000013676) #25	ENSPLOG00000013664	ENSPLOG00000013653	ENSPLOG00000013639	FOXL2 (ENSPLOG00000013618)	PIK3CB (ENSPLOG00000013554)	FAIM (ENSPLOG00000013468)	CEP70 (ENSPLOG00000013152)	ESYT3 (ENSPLOG00000012831)	MRAS (ENSPLOG00000012781)	NME9 (ENSPLOG00000012681)	ARMC8 (ENSPLOG00000012437)	DBR1 (ENSPLOG00000012347)
leopard	MODERN SPECIES	5	GK5 (ENSPPRG00000007419) #10	ENSPPRG00000015257	TFDP2 (ENSPPRG00000008909) #11	ATP1B3 (ENSPPRG00000009308) #12	GRK7 (ENSPPRG00000010184)	RNF7 (ENSPPRG00000010875)	RASA2 (ENSPPRG00000012757) #14	ZBTB38 (ENSPPRG00000015363) #15	PXYLP1 (ENSPPRG00000013368) #16	SPSB4 (ENSPPRG00000014139) #17	SLC25A36 (ENSPPRG00000015256) #18	ENSPPRG00000015570	TRIM42 (ENSPPRG00000016034) #19	CLSTN2 (ENSPPRG00000017546) #20	NMNAT3 (ENSPPRG00000020994) #21	RBP1 (ENSPPRG00000022489) #22	RBP2 (ENSPPRG00000024816) #23	COPB2 (ENSPPRG00000024757) #24	MRPS22 (ENSPPRG00000023721) #25	ENSPPRG00000015526	ENSPPRG00000015532	ENSPPRG00000015543	FOXL2 (ENSPPRG00000023122)	ENSPPRG00000022943	PIK3CB (ENSPPRG00000001380)	FAIM (ENSPPRG00000002499)	ENSPPRG00000002807	ESYT3 (ENSPPRG00000004445)	MRAS (ENSPPRG00000005624)	NME9 (ENSPPRG00000006754)	ARMC8 (ENSPPRG00000012471)
Tiger	MODERN SPECIES	242	GK5 (ENSPTIG00000005036) #10	TFDP2 (ENSPTIG00000006460) #11	ENSPTIG00000005462	ENSPTIG00000009651	GRK7 (ENSPTIG00000009733)	RNF7 (ENSPTIG00000010047)	RASA2 (ENSPTIG00000010804) #14	ZBTB38 (ENSPTIG00000005500) #15	PXYLP1 (ENSPTIG00000013939) #16	SPSB4 (ENSPTIG00000015447) #17	SLC25A36 (ENSPTIG00000015621) #18	ENSPTIG00000017087	TRIM42 (ENSPTIG00000017506) #19	CLSTN2 (ENSPTIG00000017838) #20	ENSPTIG00000018457 #21	RBP1 (ENSPTIG00000018689) #22	RBP2 (ENSPTIG00000019472) #23
Cat	MODERN SPECIES	240	GK5 (ENSFCAG00000003088) #10	TFDP2 (ENSFCAG00000003086) #11	ENSFCAG00000048032	ENSFCAG00000028193	ATP1B3 (ENSFCAG00000030431) #12	GRK7 (ENSFCAG00000010128)	RNF7 (ENSFCAG00000037838)	RASA2 (ENSFCAG00000002561) #14	ZBTB38 (ENSFCAG00000030922) #15	PXYLP1 (ENSFCAG00000022336) #16	SPSB4 (ENSFCAG00000025256) #17	SLC25A36 (ENSFCAG00000035204) #18	TRIM42 (ENSFCAG00000001651) #19	CLSTN2 (ENSFCAG00000002429) #20	NMNAT3 (ENSFCAG00000046056) #21	RBP1 (ENSFCAG00000034212) #22	RBP2 (ENSFCAG00000001467) #23	COPB2 (ENSFCAG00000001465)	MRPS22 (ENSFCAG00000001464) #25	ENSFCAG00000041019	ENSFCAG00000044931	FOXL2 (ENSFCAG00000045890)	PIK3CB (ENSFCAG00000002828)	FAIM (ENSFCAG00000044712)	CEP70 (ENSFCAG00000013006)	ESYT3 (ENSFCAG00000013002)	MRAS (ENSFCAG00000026623)	NME9 (ENSFCAG00000001955)	ARMC8 (ENSFCAG00000001954)	DBR1 (ENSFCAG00000002229)	A4GNT (ENSFCAG00000002224)
Caniformia	ANCESTRAL SPECIES		ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.c.b ##18	ENSGT00940000154369.c.a ##18	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Canidae	ANCESTRAL SPECIES	24	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.c.b ##18	ENSGT00940000154369.c.a ##18	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898	ENSGT00940000158655
Canis_lupus	ANCESTRAL SPECIES	27	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00950000185721	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.c.b ##18	ENSGT00940000154369.c.a ##18	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772.y.a	ENSGT00390000007772.z	ENSGT00390000007772.y.b	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00390000018433.s.a.a.f
Dingo	MODERN SPECIES	80	GK5 (ENSCAFG00020008666) #10	TFDP2 (ENSCAFG00020008640) #11	ATP1B3 (ENSCAFG00020008628) #12	GRK7 (ENSCAFG00020008625)	ENSCAFG00020008621	ENSCAFG00020008615	RASA2 (ENSCAFG00020008540) #14	ZBTB38 (ENSCAFG00020008519) #15	PXYLP1 (ENSCAFG00020008503) #16	SPSB4 (ENSCAFG00020008496) #17	ENSCAFG00020008487 ##18	ENSCAFG00020008476 ##18	TRIM42 (ENSCAFG00020008472) #19	CLSTN2 (ENSCAFG00020008307) #20	NMNAT3 (ENSCAFG00020008280) #21	RBP1 (ENSCAFG00020008276) #22	RBP2 (ENSCAFG00020008262) #23	COPB2 (ENSCAFG00020008249) #24	ENSCAFG00020008237 #25	ENSCAFG00020008235	ENSCAFG00020008234	ENSCAFG00020008230	ENSCAFG00020008227	PIK3CB (ENSCAFG00020008199)	FAIM (ENSCAFG00020008189)	ENSCAFG00020008186	CEP70 (ENSCAFG00020008176)	ESYT3 (ENSCAFG00020008113)	ENSCAFG00020008091	MRAS (ENSCAFG00020008087)	ENSCAFG00020008081
Dog	MODERN SPECIES	15	XRN1 (ENSCAFG00845028618) #9	GK5 (ENSCAFG00845028559) #10	TFDP2 (ENSCAFG00845028411) #11	ATP1B3 (ENSCAFG00845028285) #12	GRK7 (ENSCAFG00845028236)	ENSCAFG00845028212	ENSCAFG00845028197	RASA2 (ENSCAFG00845028112) #14	ZBTB38 (ENSCAFG00845028009) #15	PXYLP1 (ENSCAFG00845027868) #16	SPSB4 (ENSCAFG00845027830) #17	SLC25A36 (ENSCAFG00845027764) #18	TRIM42 (ENSCAFG00845027689) #19	CLSTN2 (ENSCAFG00845027590) #20	NMNAT3 (ENSCAFG00845027464) #21	ENSCAFG00845027390 #22	RBP2 (ENSCAFG00845027313) #23	COPB2 (ENSCAFG00845027083) #24	MRPS22 (ENSCAFG00845027000) #25	ENSCAFG00845026965	ENSCAFG00845026940	ENSCAFG00845026883	PRR23A (ENSCAFG00845026853)	PIK3CB (ENSCAFG00845025921)	FAIM (ENSCAFG00845025733)	ENSCAFG00845025691	ENSCAFG00845025659	CEP70 (ENSCAFG00845025346)	ESYT3 (ENSCAFG00845024743)	MRAS (ENSCAFG00845024583)	NME9 (ENSCAFG00845024321)
Caniformia_b	ANCESTRAL SPECIES		ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.c.b ##18	ENSGT00940000154369.c.a ##18	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Mustelinae	ANCESTRAL SPECIES	97													ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Ferret	MODERN SPECIES	250															NMNAT3 (ENSMPUG00000009073) #21	RBP1 (ENSMPUG00000009083) #22	RBP2 (ENSMPUG00000009092) #23	COPB2 (ENSMPUG00000009098) #24	MRPS22 (ENSMPUG00000009114) #25	ENSMPUG00000018661	PIK3CB (ENSMPUG00000009122)	FAIM (ENSMPUG00000009142)	CEP70 (ENSMPUG00000009149)	ESYT3 (ENSMPUG00000009161)	MRAS (ENSMPUG00000009182)	NME9 (ENSMPUG00000009189)	ARMC8 (ENSMPUG00000009208)	DBR1 (ENSMPUG00000009230)	A4GNT (ENSMPUG00000009238)	DZIP1L (ENSMPUG00000009244)	CLDN18 (ENSMPUG00000009256)
American mink	MODERN SPECIES	357													TRIM42 (ENSNVIG00000016555) #19	CLSTN2 (ENSNVIG00000016568) #20	NMNAT3 (ENSNVIG00000016592) #21	RET1 (ENSNVIG00000016618) #22	RBP2 (ENSNVIG00000016643) #23	COPB2 (ENSNVIG00000016651) #24	MRPS22 (ENSNVIG00000016696) #25
Ursidae	ANCESTRAL SPECIES	1	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.c.b ##18	ENSGT00940000154369.c.a ##18	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522.n	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Ursus	ANCESTRAL SPECIES	14	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.c.b ##18	ENSGT00940000154369.c.a ##18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522.n	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
American black bear	MODERN SPECIES	4028														ENSUAMG00000022388 #21	ENSUAMG00000022387 #21	ENSUAMG00000022386 #22
Giant Panda	MODERN SPECIES	16	GK5 (ENSAMEG00000012501) #10	TFDP2 (ENSAMEG00000012466) #11	ATP1B3 (ENSAMEG00000012443) #12	ENSAMEG00000028514	GRK7 (ENSAMEG00000012428)	RNF7 (ENSAMEG00000029757)	RASA2 (ENSAMEG00000016471) #14	ZBTB38 (ENSAMEG00000019668) #15	PXYLP1 (ENSAMEG00000016481) #16	SPSB4 (ENSAMEG00000016489) #17	SLC25A36 (ENSAMEG00000016498) #18	TRIM42 (ENSAMEG00000016501) #19	CLSTN2 (ENSAMEG00000015696) #20	ENSAMEG00000024606	ENSAMEG00000026229 #21	RBP1 (ENSAMEG00000024877) #22	RBP2 (ENSAMEG00000003834) #23	COPB2 (ENSAMEG00000005657) #24	ENSAMEG00000028418 #25	ENSAMEG00000027748	ENSAMEG00000025901	FOXL2 (ENSAMEG00000025713)	PIK3CB (ENSAMEG00000005226)	FAIM (ENSAMEG00000005221)	CEP70 (ENSAMEG00000004094)	ESYT3 (ENSAMEG00000006849)	MRAS (ENSAMEG00000006368)	NME9 (ENSAMEG00000031175)	ARMC8 (ENSAMEG00000006293)	DBR1 (ENSAMEG00000006272)	A4GNT (ENSAMEG00000006270)
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Chiroptera	ANCESTRAL SPECIES	19				ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Megabat	MODERN SPECIES	2427																RBP1 (ENSPVAG00000001155) #22	RBP2 (ENSPVAG00000001154) #23	COPB2 (ENSPVAG00000001153) #24	MRPS22 (ENSPVAG00000001152) #25
Microchiroptera	ANCESTRAL SPECIES	16	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.y.a	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898	ENSGT00940000158655
Greater horseshoe bat	MODERN SPECIES	8	TMEM43 (ENSRFEG00010015322)	CHCHD4 (ENSRFEG00010015265)	ENSRFEG00010014549 #11	ATP1B3 (ENSRFEG00010014478) #12	RNF7 (ENSRFEG00010014386)	ENSRFEG00010014323	RASA2 (ENSRFEG00010014242) #14	ZBTB38 (ENSRFEG00010014220) #15	PXYLP1 (ENSRFEG00010014126) #16	SPSB4 (ENSRFEG00010014088) #17	SLC25A36 (ENSRFEG00010013926) #18	TRIM42 (ENSRFEG00010013822) #19	CLSTN2 (ENSRFEG00010013540) #20	ENSRFEG00010013420	NMNAT3 (ENSRFEG00010013358) #21	RBP1 (ENSRFEG00010013215) #22	RBP2 (ENSRFEG00010013165) #23	COPB2 (ENSRFEG00010013082) #24	MRPS22 (ENSRFEG00010013009) #25	ENSRFEG00010012997	ENSRFEG00010012973	ENSRFEG00010012951	ENSRFEG00010012943	PIK3CB (ENSRFEG00010012826)	FAIM (ENSRFEG00010012708)	CEP70 (ENSRFEG00010012184)	ESYT3 (ENSRFEG00010011728)	MRAS (ENSRFEG00010011661)	NME9 (ENSRFEG00010011477)	ARMC8 (ENSRFEG00010010786)	DBR1 (ENSRFEG00010010678)
Microbat	MODERN SPECIES	945	TMEM43 (ENSMLUG00000010638)	ENSMLUG00000010633	ATP1B3 (ENSMLUG00000011339) #12	GRK7 (ENSMLUG00000030484)	ENSMLUG00000007878	TFDP2 (ENSMLUG00000014707) #11	RASA2 (ENSMLUG00000007834) #14	ZBTB38 (ENSMLUG00000012512) #15	PXYLP1 (ENSMLUG00000012502) #16	SPSB4 (ENSMLUG00000001564) #17	SLC25A36 (ENSMLUG00000001464) #18	ENSMLUG00000025970	TRIM42 (ENSMLUG00000008678) #19	CLSTN2 (ENSMLUG00000005298) #20	NMNAT3 (ENSMLUG00000005705) #21	ENSMLUG00000004824 #22	RBP2 (ENSMLUG00000004818) #23	COPB2 (ENSMLUG00000015621) #24	MRPS22 (ENSMLUG00000015608) #25	ENSMLUG00000011579	PIK3CB (ENSMLUG00000000124)	FAIM (ENSMLUG00000002496)	CEP70 (ENSMLUG00000007973)	ESYT3 (ENSMLUG00000007937)	NME9 (ENSMLUG00000001649)	ARMC8 (ENSMLUG00000001644)	DBR1 (ENSMLUG00000026117)	A4GNT (ENSMLUG00000026105)	ENSMLUG00000029530	IL20RB (ENSMLUG00000001546)	ENSMLUG00000022490
Equus	ANCESTRAL SPECIES	5	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369.d #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00940000168009	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00390000007772	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898
Horse	DUPLICATION
Horse	MODERN SPECIES	324																ENSECAG00000035746 #22
Horse	MODERN SPECIES	7	ENSECAG00000055509	GK5 (ENSECAG00000045044) #10	TFDP2 (ENSECAG00000021725) #11	ATP1B3 (ENSECAG00000019885) #12	GRK7 (ENSECAG00000018719)	RNF7 (ENSECAG00000026883)	RASA2 (ENSECAG00000010845) #14	ZBTB38 (ENSECAG00000010836) #15	PXYLP1 (ENSECAG00000010807) #16	SPSB4 (ENSECAG00000010241) #17	SLC25A36 (ENSECAG00000010094) #18	TRIM42 (ENSECAG00000008921) #19	CLSTN2 (ENSECAG00000022054) #20	ENSECAG00000001591	NMNAT3 (ENSECAG00000021932) #21	RBP2 (ENSECAG00000020170) #22	ENSECAG00000034060	COPB2 (ENSECAG00000015099) #24	MRPS22 (ENSECAG00000013272) #25	ENSECAG00000047572	FOXL2 (ENSECAG00000034891)	PIK3CB (ENSECAG00000023941)	FAIM (ENSECAG00000023744)	CEP70 (ENSECAG00000022064)	ESYT3 (ENSECAG00000019060)	MRAS (ENSECAG00000018736)	NME9 (ENSECAG00000029387)	ARMC8 (ENSECAG00000014265)	DBR1 (ENSECAG00000013920)	A4GNT (ENSECAG00000013882)	DZIP1L (ENSECAG00000012164)
Atlantogenata	ANCESTRAL SPECIES	45	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00940000161449 #15	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23
Xenarthra	ANCESTRAL SPECIES	768											ENSGT01030000234629.C #17	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23
Armadillo	MODERN SPECIES	458											SPSB4 (ENSDNOG00000044117) #17	SLC25A36 (ENSDNOG00000004117) #18	TRIM42 (ENSDNOG00000009507) #19	CLSTN2 (ENSDNOG00000003077) #20	NMNAT3 (ENSDNOG00000041490) #21	RBP1 (ENSDNOG00000025423) #22	RBP2 (ENSDNOG00000013605) #23	MRPS22 (ENSDNOG00000019339) #25
Afrotheria	ANCESTRAL SPECIES	59	ENSGT00950000183097.a.b #7	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22
Tenrec	MODERN SPECIES	1554																RBP1 (ENSETEG00000015262) #22
Afrotheria_a	ANCESTRAL SPECIES	57	ENSGT00950000183097.a.b #7	ENSGT00940000155714 #8	ENSGT00670000098080 #9	ENSGT01000000214434.A #10	ENSGT00940000157909 #11	ENSGT01030000234579.A.b #12	ENSGT00940000160511	ENSGT00940000155481	ENSGT00940000158201 #14	ENSGT00390000016324 #16	ENSGT01030000234629.C #17	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22
Elephant	MODERN SPECIES	383	PLS1 (ENSLAFG00000008746) #7	ATR (ENSLAFG00000015442) #8	XRN1 (ENSLAFG00000015426) #9	GK5 (ENSLAFG00000008661) #10	TFDP2 (ENSLAFG00000010557) #11	ATP1B3 (ENSLAFG00000010553) #12	GRK7 (ENSLAFG00000005265)	RNF7 (ENSLAFG00000005263)	RASA2 (ENSLAFG00000004893) #14	PXYLP1 (ENSLAFG00000010318) #16	SPSB4 (ENSLAFG00000004961) #17	SLC25A36 (ENSLAFG00000001428) #18	TRIM42 (ENSLAFG00000008928) #19	CLSTN2 (ENSLAFG00000017595) #20	NMNAT3 (ENSLAFG00000009824) #21	RBP1 (ENSLAFG00000022319) #22
Hyrax	MODERN SPECIES	1221																RBP1 (ENSPCAG00000012264) #22
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00390000010397.b	ENSGT00440000037733	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b	ENSGT00390000013989.a	ENSGT00390000005140.b.b	ENSGT00940000160622	ENSGT00940000167875	ENSGT00530000063529.C	ENSGT00990000204054	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898	ENSGT00940000158655
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00390000010397.b	ENSGT00440000037733	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b	ENSGT00390000013989.a	ENSGT00390000005140.b.b	ENSGT00940000160622	ENSGT00940000167875	ENSGT00530000063529.C	ENSGT00990000204054	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898	ENSGT00940000158655
Diprotodontia	ANCESTRAL SPECIES	23												ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898	ENSGT00940000158655
Diprotodontia_a	ANCESTRAL SPECIES	24												ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00390000007364	ENSGT00390000009029	ENSGT00940000161072	ENSGT00940000156353	ENSGT00940000162486	ENSGT00390000003033	ENSGT00510000047481	ENSGT00510000047981.d	ENSGT00940000160898	ENSGT00940000158655
Common wonbat	MODERN SPECIES	1139										ENSVURG00010009083 ##17	SLC25A36 (ENSVURG00010009063) #18	ENSVURG00010009052	TRIM42 (ENSVURG00010009040) #19	CLSTN2 (ENSVURG00010009024) #20	NMNAT3 (ENSVURG00010009001) #21	RBP1 (ENSVURG00010008993) #22	RBP2 (ENSVURG00010008964) #23	COPB2 (ENSVURG00010008881) #24	MRPS22 (ENSVURG00010008866) #25	ENSVURG00010008860	FOXL2 (ENSVURG00010008846)	PIK3CB (ENSVURG00010008817)	FAIM (ENSVURG00010008782)	CEP70 (ENSVURG00010008751)	ESYT3 (ENSVURG00010008736)	MRAS (ENSVURG00010008717)	NME9 (ENSVURG00010008701)	ARMC8 (ENSVURG00010008650)	DBR1 (ENSVURG00010008633)	A4GNT (ENSVURG00010008626)	DZIP1L (ENSVURG00010008594)
koala	MODERN SPECIES	23						ENSPCIG00000033567	ENSPCIG00000034081	ENSPCIG00000030929	ENSPCIG00000019436 ##17	SLC25A36 (ENSPCIG00000019442) #18	ENSPCIG00000019446	TRIM42 (ENSPCIG00000019455) #19	CLSTN2 (ENSPCIG00000036104) #20	ENSPCIG00000023599	NMNAT3 (ENSPCIG00000012409) #21	RBP1 (ENSPCIG00000012413) #22	RBP2 (ENSPCIG00000012414) #23	COPB2 (ENSPCIG00000024620) #24	MRPS22 (ENSPCIG00000024621) #25	FOXL2 (ENSPCIG00000024624)	PIK3CB (ENSPCIG00000006433)	FAIM (ENSPCIG00000006445)	CEP70 (ENSPCIG00000006448)	ESYT3 (ENSPCIG00000006456)	MRAS (ENSPCIG00000006467)	NME9 (ENSPCIG00000006473)	ENSPCIG00000036620	ENSPCIG00000006480	DBR1 (ENSPCIG00000006494)	A4GNT (ENSPCIG00000006499)	DZIP1L (ENSPCIG00000006506)
Wallaby	MODERN SPECIES	2302																RBP1 (ENSMEUG00000003195) #22
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000025125	ENSSHAG00000011809	ENSSHAG00000025615	ENSSHAG00000011465	ENSSHAG00000031252	ENSSHAG00000006183	ENSSHAG00000004997 #16	ENSSHAG00000023007	ENSSHAG00000031210	ENSSHAG00000018135 ##17	ENSSHAG00000018069 #18	TRIM42 (ENSSHAG00000017626) #19	CLSTN2 (ENSSHAG00000022228) #20	ENSSHAG00000020575	NMNAT3 (ENSSHAG00000013356) #21	RBP1 (ENSSHAG00000012948) #22	RBP2 (ENSSHAG00000012168) #23	COPB2 (ENSSHAG00000011236) #24	MRPS22 (ENSSHAG00000011106) #25	FOXL2 (ENSSHAG00000024160)	PIK3CB (ENSSHAG00000000088)	FAIM (ENSSHAG00000002345)	CEP70 (ENSSHAG00000031907)	ESYT3 (ENSSHAG00000010128)	MRAS (ENSSHAG00000009032)	NME9 (ENSSHAG00000008437)	ARMC8 (ENSSHAG00000007090)	DBR1 (ENSSHAG00000006752)	A4GNT (ENSSHAG00000006451)	DZIP1L (ENSSHAG00000005526)	CLDN18 (ENSSHAG00000004445)
Opossum	MODERN SPECIES	3	ENSMODG00000024963	ENSMODG00000037582	ENSMODG00000018634	FAM168B (ENSMODG00000018633)	ENSMODG00000018631	ENSMODG00000018626	ENSMODG00000024966	PXYLP1 (ENSMODG00000018625) #16	RPL36AL (ENSMODG00000024968)	ENSMODG00000018624 ##17	SLC25A36 (ENSMODG00000018620) #18	TRIM42 (ENSMODG00000018613) #19	CLSTN2 (ENSMODG00000018610) #20	ENSMODG00000051113	NMNAT3 (ENSMODG00000018604) #21	RBP1 (ENSMODG00000018603) #22	RBP2 (ENSMODG00000018602) #23	COPB2 (ENSMODG00000018599) #24	MRPS22 (ENSMODG00000018598) #25	ENSMODG00000028472	FOXL2 (ENSMODG00000018597)	PIK3CB (ENSMODG00000018581)	FAIM (ENSMODG00000018576)	CEP70 (ENSMODG00000018573)	ESYT3 (ENSMODG00000018569)	MRAS (ENSMODG00000018565)	NME9 (ENSMODG00000018564)	ARMC8 (ENSMODG00000018559)	DBR1 (ENSMODG00000040360)	A4GNT (ENSMODG00000018553)	DZIP1L (ENSMODG00000018551)
Platypus	MODERN SPECIES		ENSOANG00000010032	SLC33A1 (ENSOANG00000010031)	GMPS (ENSOANG00000013670)	ENSOANG00000010029	KCNAB1 (ENSOANG00000038732)	SSR3 (ENSOANG00000041038)	TIPARP (ENSOANG00000051335)	LEKR1 (ENSOANG00000028954)	PXYLP1 (ENSOANG00000022504) #16	SLC25A36 (ENSOANG00000050040) #18	ENSOANG00000012051 ##17	TRIM42 (ENSOANG00000014969) #19	CLSTN2 (ENSOANG00000000204) #20	ENSOANG00000002680 #21	ENSOANG00000041359 #21	RBP1 (ENSOANG00000002683) #22	RBP2 (ENSOANG00000002685) #23	COPB2 (ENSOANG00000003417) #24	MRPS22 (ENSOANG00000037094) #25	FOXL2 (ENSOANG00000042175)	PIK3CB (ENSOANG00000014698)	ENSOANG00000003058	PER2 (ENSOANG00000003059)	ENSOANG00000003062	ENSOANG00000011082	CAB39 (ENSOANG00000042249)	ENSOANG00000037760	ENSOANG00000008773	ENSOANG00000012342	ENSOANG00000003243	ENSOANG00000043314
Sauria	ANCESTRAL SPECIES	9	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000159217	ENSGT00730000111282	ENSGT00940000156796.k.a.b	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b
Archelosauria	ANCESTRAL SPECIES	11	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000159217	ENSGT00730000111282	ENSGT00940000156796.k.a.b	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b
Archosauria	ANCESTRAL SPECIES	10	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a
Aves	ANCESTRAL SPECIES	13	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b.gb	ENSGT01080000257332.A.a.b
Neognathae	ANCESTRAL SPECIES	9	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00530000067525	ENSGT00940000158980	ENSGT00940000158370	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a
Neognathae_b	ANCESTRAL SPECIES	11	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00530000067525	ENSGT00940000158980	ENSGT00940000158370	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a
Passeriformes	ANCESTRAL SPECIES	9														ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00530000067525	ENSGT00940000158980	ENSGT00940000158370	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a
Great tit	MODERN SPECIES	29	ENSPMJG00000016497	ENSPMJG00000016498	ENSPMJG00000016499	HES6 (ENSPMJG00000016500)	PER2 (ENSPMJG00000016502)	ENSPMJG00000016503	ENSPMJG00000016504	ENSPMJG00000016505	DGKG (ENSPMJG00000016506)	ETV5 (ENSPMJG00000016507)	BOK (ENSPMJG00000016508)	STK25 (ENSPMJG00000016509)	FARP2 (ENSPMJG00000016510)	CLSTN2 (ENSPMJG00000016511) #20	NMNAT3 (ENSPMJG00000016512) #21	RBP1 (ENSPMJG00000016513) #22	RBP2 (ENSPMJG00000016514) #23	COPB2 (ENSPMJG00000016515) #24	MRPS22 (ENSPMJG00000016516) #25	PIK3CB (ENSPMJG00000016518)	ENSPMJG00000016519	UBE2G2 (ENSPMJG00000016520)	TSPEAR (ENSPMJG00000016521)	LRRC3 (ENSPMJG00000016522)	TRPM2 (ENSPMJG00000016523)	THAP4 (ENSPMJG00000016524)	ENSPMJG00000016525	ATG4B (ENSPMJG00000016526)	DTYMK (ENSPMJG00000016527)	ING5 (ENSPMJG00000016528)	D2HGDH (ENSPMJG00000016529)
Passeriformes_d	ANCESTRAL SPECIES	10														ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00530000067525	ENSGT00940000158370.fb.b	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a.j	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b.gb
Flycatcher	MODERN SPECIES	28													CLSTN2 (ENSFALG00000004119) #20	ENSFALG00000024738	NMNAT3 (ENSFALG00000028965) #21	RBP1 (ENSFALG00000004102) #22	RBP2 (ENSFALG00000004097) #23	COPB2 (ENSFALG00000004094) #24	MRPS22 (ENSFALG00000027935) #25	FOXL2 (ENSFALG00000015145)	PIK3CB (ENSFALG00000004081)	ENSFALG00000004073	ENSFALG00000004057	ENSFALG00000027762	ENSFALG00000024635	ENSFALG00000004045	CAB39 (ENSFALG00000027583)	ENSFALG00000004037	ENSFALG00000015132	GPR55 (ENSFALG00000015120)	ENSFALG00000004033
Passeriformes_g	ANCESTRAL SPECIES	11														ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00530000067525	ENSGT00940000158370.fb.b	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a.i	ENSGT00950000183115.a.j	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a
Passeroidea	ANCESTRAL SPECIES	43														ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00530000067525	ENSGT00940000158370.fb.b	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a.j	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b.gb
Common canary	MODERN SPECIES	10			UGT8 (ENSSCAG00000010480)	ARSJ (ENSSCAG00000010476)	ENSSCAG00000010472	ENSSCAG00000010459	ANK2 (ENSSCAG00000009390)	LARP7 (ENSSCAG00000009132)	ENSSCAG00000009128	ALPK1 (ENSSCAG00000009087)	TIFA (ENSSCAG00000009066)	AP1AR (ENSSCAG00000009057)	ENSSCAG00000009049	CLSTN2 (ENSSCAG00000009038) #20	NMNAT3 (ENSSCAG00000009034) #21	RBP1 (ENSSCAG00000009031) #22	RBP2 (ENSSCAG00000009028) #23	ENSSCAG00000009022	ENSSCAG00000009018	ENSSCAG00000009013	ENSSCAG00000009008	ST6GAL1 (ENSSCAG00000009002)	ADIPOQ (ENSSCAG00000009000)	ENSSCAG00000008996	OTOS (ENSSCAG00000008988)	ENSSCAG00000008982	GPC1 (ENSSCAG00000008958)	DUSP28 (ENSSCAG00000008950)	ENSSCAG00000008943	ENSSCAG00000008939	PARL (ENSSCAG00000008933)
Medium ground finch	MODERN SPECIES	83	AGXT (ENSGFOG00000000240)	KIF1A (ENSGFOG00000001286)	ILKAP (ENSGFOG00000014165)	ERFE (ENSGFOG00000014168)	KLHL30 (ENSGFOG00000014171)	FBXL12 (ENSGFOG00000014174)	ENSGFOG00000014176	ENSGFOG00000014178	POLR2D (ENSGFOG00000014181)	AMMECR1L (ENSGFOG00000014182)	SAP130 (ENSGFOG00000014183)	UGGT1 (ENSGFOG00000014196)	CLSTN2 (ENSGFOG00000014303) #20	ENSGFOG00000014305	NMNAT3 (ENSGFOG00000014307) #21	RBP1 (ENSGFOG00000014310) #22	RBP2 (ENSGFOG00000014312) #23
Neognathae_c	ANCESTRAL SPECIES	13	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b.fb.a	ENSGT01040000240444.A.b.a.b.gb
Kakapo	MODERN SPECIES	25	EVI5 (ENSSHBG00005006419)	RPL5 (ENSSHBG00005006441)	DIPK1A (ENSSHBG00005006475)	MTF2 (ENSSHBG00005006490)	TMED5 (ENSSHBG00005006506)	CCDC18 (ENSSHBG00005006585)	ENSSHBG00005006839	DR1 (ENSSHBG00005006857)	FNBP1L (ENSSHBG00005006896)	BCAR3 (ENSSHBG00005006986)	SLC25A36 (ENSSHBG00005007014) #18	ENSSHBG00005007033 ##17	TRIM42 (ENSSHBG00005007054) #19	CLSTN2 (ENSSHBG00005007183) #20	NMNAT3 (ENSSHBG00005007222) #21	RBP1 (ENSSHBG00005007232) #22	RBP2 (ENSSHBG00005007248) #23	COPB2 (ENSSHBG00005007264) #24	MRPS22 (ENSSHBG00005007308) #25	FOXL2 (ENSSHBG00005007319)	PIK3CB (ENSSHBG00005007477)	ENSSHBG00005007848	PER2 (ENSSHBG00005007954)	HES6 (ENSSHBG00005008658)	ENSSHBG00005008662	CAB39 (ENSSHBG00005008666)	ITM2C (ENSSHBG00005008670)	ENSSHBG00005008676	GPR55 (ENSSHBG00005008679)	ENSSHBG00005008685	ST6GAL1 (ENSSHBG00005008688)
Golden eagle	MODERN SPECIES	1	SCG2 (ENSACCG00020005068)	KCNE4 (ENSACCG00020005072)	ACSL3 (ENSACCG00020005082)	MOGAT1 (ENSACCG00020005091)	FARSB (ENSACCG00020005096)	SGPP2 (ENSACCG00020005110)	PAX3 (ENSACCG00020005131)	ENSACCG00020005157	EPHA4 (ENSACCG00020005170)	PXYLP1 (ENSACCG00020005184) #16	SLC25A36 (ENSACCG00020005189) #18	ENSACCG00020005199 ##17	TRIM42 (ENSACCG00020005220) #19	CLSTN2 (ENSACCG00020005238) #20	NMNAT3 (ENSACCG00020005249) #21	RBP1 (ENSACCG00020005256) #22	RBP2 (ENSACCG00020005269) #23	COPB2 (ENSACCG00020005277) #24	MRPS22 (ENSACCG00020005295) #25	FOXL2 (ENSACCG00020005312)	PIK3CB (ENSACCG00020005323)	ENSACCG00020005349	PER2 (ENSACCG00020005365)	HES6 (ENSACCG00020005395)	ENSACCG00020005406	CAB39 (ENSACCG00020005422)	ITM2C (ENSACCG00020005433)	ENSACCG00020005448	GPR55 (ENSACCG00020005464)	GPR35 (ENSACCG00020005475)	ENSACCG00020005487
Galloanserae	ANCESTRAL SPECIES	16	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00530000067525	ENSGT00940000158370	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b.gb
Anatidae	ANCESTRAL SPECIES	40	ENSGT00970000193372.b	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b.gb	ENSGT01080000257332.A.a.b.a.a	ENSGT01040000240444.A.b.a.b.fb.a
Pink-footed goose	MODERN SPECIES	102											SLC25A36 (ENSABRG00000007700) #18	ENSABRG00000007688 ##17	TRIM42 (ENSABRG00000007666) #19	CLSTN2 (ENSABRG00000007646) #20	NMNAT3 (ENSABRG00000007625) #21	RBP1 (ENSABRG00000007622) #22	RBP2 (ENSABRG00000007617) #23	COPB2 (ENSABRG00000007599) #24	MRPS22 (ENSABRG00000007587) #25	PIK3CB (ENSABRG00000007550)	ENSABRG00000007534	PER2 (ENSABRG00000007500)	ENSABRG00000007496	CAB39 (ENSABRG00000007491)	ITM2C (ENSABRG00000007488)	ENSABRG00000007481	GPR55 (ENSABRG00000007478)	ENSABRG00000007472	ENSABRG00000007465	ST6GAL1 (ENSABRG00000007458)	ADIPOQ (ENSABRG00000007455)
Duck	MODERN SPECIES	27	KCNE4 (ENSAPLG00000001808)	ACSL3 (ENSAPLG00000009888)	MOGAT1 (ENSAPLG00000010112)	FARSB (ENSAPLG00000010292)	SGPP2 (ENSAPLG00000010903)	PAX3 (ENSAPLG00000011062)	ENSAPLG00000026154	EPHA4 (ENSAPLG00000009611)	PXYLP1 (ENSAPLG00000004284) #16	SLC25A36 (ENSAPLG00000025953) #18	ENSAPLG00000021209	ENSAPLG00000009878 ##17	TRIM42 (ENSAPLG00000004454) #19	CLSTN2 (ENSAPLG00000004577) #20	ENSAPLG00000002699 #21	RBP1 (ENSAPLG00000002750) #22	RBP2 (ENSAPLG00000002772) #23	COPB2 (ENSAPLG00000002884) #24	MRPS22 (ENSAPLG00000003534) #25	PIK3CB (ENSAPLG00000003554)	ENSAPLG00000004255	PER2 (ENSAPLG00000004326)	HES6 (ENSAPLG00000020110)	ENSAPLG00000005097	CAB39 (ENSAPLG00000005148)	ITM2C (ENSAPLG00000005414)	GPR55 (ENSAPLG00000001871)	ENSAPLG00000001873	ENSAPLG00000016643	ENSAPLG00000001874	ENSAPLG00000005572
Phasianidae	ANCESTRAL SPECIES	9	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b.c #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00530000067525	ENSGT00940000158370	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b.fb.a
Japanese quail	MODERN SPECIES	27	ACSL3 (ENSCJPG00005005784)	MOGAT1 (ENSCJPG00005005782)	FARSB (ENSCJPG00005005780)	SGPP2 (ENSCJPG00005005778)	ENSCJPG00005005776	PAX3 (ENSCJPG00005005775)	ENSCJPG00005005774	EPHA4 (ENSCJPG00005005771)	ENSCJPG00005005764	PXYLP1 (ENSCJPG00005005759) #16	SLC25A36 (ENSCJPG00005005758) #18	ENSCJPG00005005756 ##17	TRIM42 (ENSCJPG00005005755) #19	CLSTN2 (ENSCJPG00005005748) #20	NMNAT3 (ENSCJPG00005005694) #21	RBP1 (ENSCJPG00005005691) #22	RBP2 (ENSCJPG00005005688) #23	COPB2 (ENSCJPG00005005687) #24	MRPS22 (ENSCJPG00005005683) #25	PIK3CB (ENSCJPG00005005633)	ENSCJPG00005005629	ENSCJPG00005005627	PER2 (ENSCJPG00005005589)	HES6 (ENSCJPG00005005585)	ENSCJPG00005005581	CAB39 (ENSCJPG00005005578)	ITM2C (ENSCJPG00005005549)	ENSCJPG00005005545	GPR55 (ENSCJPG00005005542)	ENSCJPG00005005540	ENSCJPG00005005538
Phasianidae_b	ANCESTRAL SPECIES	12	ENSGT00970000193372.b	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b.c #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b.fb.a	ENSGT01040000240444.A.b.a.b.fb.b
Chicken	MODERN SPECIES	38	KCNE4 (ENSGALG00010025787)	ACSL3 (ENSGALG00010025705)	MOGAT1 (ENSGALG00010023597)	FARSB (ENSGALG00010023588)	SGPP2 (ENSGALG00010023552)	PAX3 (ENSGALG00010025378)	ENSGALG00010025367	EPHA4 (ENSGALG00010025364)	ENSGALG00010025354	PXYLP1 (ENSGALG00010025346) #16	SLC25A36 (ENSGALG00010025316) #18	SPSB2 (ENSGALG00010025297) ##17	TRIM42 (ENSGALG00010025265) #19	CLSTN2 (ENSGALG00010025242) #20	NMNAT3 (ENSGALG00010026692) #21	RBP1 (ENSGALG00010025172) #22	RBP2 (ENSGALG00010025169) #23	COPB2 (ENSGALG00010025139) #24	MRPS22 (ENSGALG00010025160) #25	FOXL2 (ENSGALG00010026018)	PIK3CB (ENSGALG00010025125)	VAMP2 (ENSGALG00010025072)	PER2 (ENSGALG00010025047)	HES6 (ENSGALG00010025028)	HES6 (ENSGALG00010024997)	CAB39 (ENSGALG00010024970)	ITM2C (ENSGALG00010024964)	ENSGALG00010025692	GPR55 (ENSGALG00010025664)	ENSGALG00010025648	ENSGALG00010025657
African ostrich	MODERN SPECIES	574							PAX3 (ENSSCUG00000012144)	ENSSCUG00000012148	EPHA4 (ENSSCUG00000012153)	PXYLP1 (ENSSCUG00000012172) #16	SLC25A36 (ENSSCUG00000012178) #18	ENSSCUG00000012180 ##17	TRIM42 (ENSSCUG00000012183) #19	CLSTN2 (ENSSCUG00000012194) #20	NMNAT3 (ENSSCUG00000012203) #21	RBP1 (ENSSCUG00000012204) #22	RBP2 (ENSSCUG00000012206) #23	COPB2 (ENSSCUG00000012209) #24	MRPS22 (ENSSCUG00000012212) #25	PIK3CB (ENSSCUG00000012221)	VAMP2 (ENSSCUG00000012229)	PER2 (ENSSCUG00000012234)	ENSSCUG00000012243	CAB39 (ENSSCUG00000012244)	ITM2C (ENSSCUG00000012247)	ENSSCUG00000012248	GPR55 (ENSSCUG00000012249)	ENSSCUG00000012251	ENSSCUG00000012252	ENSSCUG00000012254	ENSSCUG00000012257
Australian saltwater crocodile	MODERN SPECIES	30	ENSCPRG00005004541	ENSCPRG00005004549	MOGAT1 (ENSCPRG00005004550)	FARSB (ENSCPRG00005004555)	SGPP2 (ENSCPRG00005004586)	PAX3 (ENSCPRG00005004603)	ENSCPRG00005004614	EPHA4 (ENSCPRG00005004622)	PXYLP1 (ENSCPRG00005004643) #16	SLC25A36 (ENSCPRG00005004653) #18	ENSCPRG00005004663 ##17	ENSCPRG00005004666	TRIM42 (ENSCPRG00005004672) #19	CLSTN2 (ENSCPRG00005004695) #20	NMNAT3 (ENSCPRG00005004704) #21	RBP1 (ENSCPRG00005004706) #22	RBP2 (ENSCPRG00005004717) #23	COPB2 (ENSCPRG00005004722) #24	MRPS22 (ENSCPRG00005004730) #25	PIK3CB (ENSCPRG00005004745)	ENSCPRG00005004754	PER2 (ENSCPRG00005004773)	CAB39 (ENSCPRG00005004789)	TBCCD1 (ENSCPRG00005004793)	DNAJB11 (ENSCPRG00005004800)	ENSCPRG00005004806	PFKL (ENSCPRG00005004812)	CFAP410 (ENSCPRG00005004834)	ENSCPRG00005004842	ENSCPRG00005004881	ENSCPRG00005004955
Cryptodira	ANCESTRAL SPECIES	16	ENSGT00970000193372.b	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000159217	ENSGT00730000111282	ENSGT00940000156796.k.a.b	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a
Testudinoidea	ANCESTRAL SPECIES	9	ENSGT00970000193372.b.d	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a.b	ENSGT01040000240444.A.b.a.b.gb	ENSGT01040000240444.A.b.a.b.fb.b.b
Testudinidae	ANCESTRAL SPECIES	7	ENSGT00970000193372.b.d	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000156342	ENSGT00940000161398	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a.b	ENSGT01040000240444.A.b.a.b.gb	ENSGT01040000240444.A.b.a.b.fb.b.b	ENSGT01100000263502.A.a.a.b
Goode s thornscrub tortoise	MODERN SPECIES	23	KCNE4 (ENSGEVG00005016754)	ACSL3 (ENSGEVG00005016782)	MOGAT1 (ENSGEVG00005016871)	FARSB (ENSGEVG00005017015)	SGPP2 (ENSGEVG00005017114)	PAX3 (ENSGEVG00005017224)	ENSGEVG00005017559	ENSGEVG00005017628	EPHA4 (ENSGEVG00005017645)	PXYLP1 (ENSGEVG00005017771) #16	SLC25A36 (ENSGEVG00005017843) #18	ENSGEVG00005017927 ##17	TRIM42 (ENSGEVG00005017959) #19	CLSTN2 (ENSGEVG00005018072) #20	NMNAT3 (ENSGEVG00005018195) #21	RBP1 (ENSGEVG00005018209) #22	RBP2 (ENSGEVG00005018221) #23	COPB2 (ENSGEVG00005018260) #24	MRPS22 (ENSGEVG00005018314) #25	FOXL2 (ENSGEVG00005018340)	PIK3CB (ENSGEVG00005018356)	ENSGEVG00005018395	PER2 (ENSGEVG00005018424)	HES6 (ENSGEVG00005018447)	CAB39 (ENSGEVG00005018464)	ITM2C (ENSGEVG00005018476)	ENSGEVG00005018521	ENSGEVG00005018538	ENSGEVG00005018551	ENSGEVG00005018560	ENSGEVG00005018578
Abingdon island giant tortoise	MODERN SPECIES	1988											TRIM42 (ENSCABG00000009035) #19	ENSCABG00000009071	CLSTN2 (ENSCABG00000009078) #20	ENSCABG00000009087	NMNAT3 (ENSCABG00000009088) #21	RBP1 (ENSCABG00000009089) #22	RBP2 (ENSCABG00000009091) #23	COPB2 (ENSCABG00000009093) #24	MRPS22 (ENSCABG00000009100) #25
Chinese turtle	MODERN SPECIES	1205															NMNAT3 (ENSPSIG00000006433) #21	RBP1 (ENSPSIG00000006845) #22	RBP2 (ENSPSIG00000007918) #23	COPB2 (ENSPSIG00000008366) #24	MRPS22 (ENSPSIG00000008976) #25	FOXL2 (ENSPSIG00000001931)
Lepidosauria	ANCESTRAL SPECIES	12	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00390000013732	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000159217	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.b.gb
Episquamata	ANCESTRAL SPECIES	2	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00390000013732	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000159217	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT00950000182825.B
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00970000193372.b	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00390000013732	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000159217	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT01040000240444.A.b.b	ENSGT00950000182825.B
Elapidae	ANCESTRAL SPECIES	4	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT01000000218546	ENSGT00940000156504.b	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b.e #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00390000013732	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000159217	ENSGT00950000183089.o.b	ENSGT01100000263567.a.b	ENSGT01060000248528.b.jh.a.a.b	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b
Elapidae_a	ANCESTRAL SPECIES		ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT01000000218546	ENSGT00940000156504.b	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b.e #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00390000013732	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000159217.q	ENSGT00950000183089.o.b	ENSGT01100000263567.a.b	ENSGT01060000248528.b.jh.a.a.b	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.a.a	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.a	ENSGT01000000218546	ENSGT00940000156504.b	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369.e #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b.e #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00390000013732	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000158370.p	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT00950000182825.B	ENSGT01040000240444.A.b.a.b.gb	ENSGT00940000157053
Mainland tiger snake	MODERN SPECIES		ACSL3 (ENSNSUG00000014239)	ENSNSUG00000014238	FARSB (ENSNSUG00000014230)	SGPP2 (ENSNSUG00000014229)	ENSNSUG00000014228	ENSNSUG00000014227	PAX3 (ENSNSUG00000014226)	ENSNSUG00000014225	EPHA4 (ENSNSUG00000014222)	PXYLP1 (ENSNSUG00000014220) #16	ENSNSUG00000014219 #18	ENSNSUG00000014218 ##17	TRIM42 (ENSNSUG00000014212) #19	CLSTN2 (ENSNSUG00000014211) #20	NMNAT3 (ENSNSUG00000014210) #21	RBP1 (ENSNSUG00000014209) #22	RBP2 (ENSNSUG00000014208) #23	MRI1 (ENSNSUG00000014207)	COPB2 (ENSNSUG00000013758) #24	MRPS22 (ENSNSUG00000013757) #25	FOXL2 (ENSNSUG00000013756)	PIK3CB (ENSNSUG00000013753)	ENSNSUG00000013752	ENSNSUG00000013751	HES6 (ENSNSUG00000013748)	CAB39 (ENSNSUG00000013747)	ITM2C (ENSNSUG00000013745)	ENSNSUG00000013744	ENSNSUG00000013743	ST6GAL1 (ENSNSUG00000013742)	ADIPOQ (ENSNSUG00000013741)
Eastern brown snake	MODERN SPECIES	16	SCG2 (ENSPTXG00000003397)	KCNE4 (ENSPTXG00000003396)	ACSL3 (ENSPTXG00000003394)	FARSB (ENSPTXG00000003392)	SGPP2 (ENSPTXG00000003390)	ENSPTXG00000003388	PAX3 (ENSPTXG00000003372)	ENSPTXG00000003370	EPHA4 (ENSPTXG00000001699)	PXYLP1 (ENSPTXG00000001675) #16	SLC25A36 (ENSPTXG00000001673) #18	ENSPTXG00000001672 ##17	TRIM42 (ENSPTXG00000001536) #19	CLSTN2 (ENSPTXG00000001530) #20	NMNAT3 (ENSPTXG00000001519) #21	RBP1 (ENSPTXG00000001517) #22	RBP2 (ENSPTXG00000001513) #23	MRI1 (ENSPTXG00000001490)	COPB2 (ENSPTXG00000001487) #24	MRPS22 (ENSPTXG00000001484) #25	FOXL2 (ENSPTXG00000001482)	PIK3CB (ENSPTXG00000001480)	ENSPTXG00000001401	ENSPTXG00000001395	ENSPTXG00000001392	ENSPTXG00000001389	CAB39 (ENSPTXG00000001388)	ENSPTXG00000001384	ENSPTXG00000001381	ENSPTXG00000001376	ST6GAL1 (ENSPTXG00000001371)
Indian cobra	MODERN SPECIES	3	AP1S3 (ENSNNAG00000007837)	SCG2 (ENSNNAG00000007798)	ACSL3 (ENSNNAG00000007693)	FARSB (ENSNNAG00000007607)	SGPP2 (ENSNNAG00000015724)	ENSNNAG00000015709	ENSNNAG00000015699	PAX3 (ENSNNAG00000015441)	ENSNNAG00000015419	EPHA4 (ENSNNAG00000015388)	PXYLP1 (ENSNNAG00000015378) #16	SLC25A36 (ENSNNAG00000015340) #18	ENSNNAG00000015327 ##17	TRIM42 (ENSNNAG00000015273) #19	CLSTN2 (ENSNNAG00000015133) #20	RBP1 (ENSNNAG00000015115) #22	NMNAT3 (ENSNNAG00000015091) #21	RBP2 (ENSNNAG00000015069) #23	MRI1 (ENSNNAG00000015056)	COPB2 (ENSNNAG00000015032) #24	MRPS22 (ENSNNAG00000014999) #25	FOXL2 (ENSNNAG00000014984)	PIK3CB (ENSNNAG00000014925)	ENSNNAG00000014869	PER2 (ENSNNAG00000014610)	ENSNNAG00000014568	ENSNNAG00000014557	CAB39 (ENSNNAG00000014511)	ENSNNAG00000014470	ADIPOQ (ENSNNAG00000014458)	COPS9 (ENSNNAG00000014452)
Lizard	MODERN SPECIES	2	SCG2 (ENSACAG00000004620)	KCNE4 (ENSACAG00000034651)	ENSACAG00000004628	MOGAT1 (ENSACAG00000004749)	FARSB (ENSACAG00000004769)	ENSACAG00000004959	ENSACAG00000004981	ENSACAG00000039924	ENSACAG00000036562	ENSACAG00000005061	ENSACAG00000043753	ENSACAG00000038755	ENSACAG00000036550	TRIM42 (ENSACAG00000015486) #19	CLSTN2 (ENSACAG00000003514) #20	RBP1 (ENSACAG00000003511) #22	RBP2 (ENSACAG00000003490) #23	ENSACAG00000003475	COPB2 (ENSACAG00000003341) #24	MRPS22 (ENSACAG00000003292) #25	FOXL2 (ENSACAG00000044456)	ENSACAG00000035359	PIK3CB (ENSACAG00000002884)	ENSACAG00000002860	ENSACAG00000002744	ENSACAG00000040838	ENSACAG00000002708	ENSACAG00000043451	ENSACAG00000002649	ENSACAG00000042862	ENSACAG00000002586
Laterata	ANCESTRAL SPECIES		ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000175758	ENSGT00940000156504	ENSGT01030000235098	ENSGT00940000156948	ENSGT00390000016324 #16	ENSGT00940000154369 #18	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00390000013732	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT00950000182825.B	ENSGT01040000240444.A.b.a.b.gb	ENSGT01040000240444.A.b.a.b.fb.a	ENSGT01100000263502.A.a.a.b
Argentine black and white tegu	MODERN SPECIES	19	FARSB (ENSSMRG00000002235)	SGPP2 (ENSSMRG00000002228)	ENSSMRG00000002225	PAX3 (ENSSMRG00000002224)	ENSSMRG00000002218	EPHA4 (ENSSMRG00000002197)	ENSSMRG00000002183	PXYLP1 (ENSSMRG00000002178) #16	SLC25A36 (ENSSMRG00000002163) #18	ENSSMRG00000002148 ##17	ENSSMRG00000002005	TRIM42 (ENSSMRG00000001885) #19	CLSTN2 (ENSSMRG00000001834) #20	ENSSMRG00000001786	NMNAT3 (ENSSMRG00000001769) #21	RBP1 (ENSSMRG00000001756) #22	RBP2 (ENSSMRG00000001753) #23	MRI1 (ENSSMRG00000001749)	COPB2 (ENSSMRG00000001722) #24	MRPS22 (ENSSMRG00000001713) #25	FOXL2 (ENSSMRG00000001687)	PIK3CB (ENSSMRG00000001668)	ENSSMRG00000001635	PER2 (ENSSMRG00000001601)	HES6 (ENSSMRG00000001599)	ENSSMRG00000001596	CAB39 (ENSSMRG00000001590)	ITM2C (ENSSMRG00000001573)	ENSSMRG00000001567	ENSSMRG00000001564	ENSSMRG00000001553
tuatara	MODERN SPECIES	8															NMNAT3 (ENSSPUG00000002860) #21	RBP1 (ENSSPUG00000002885) #22	RBP2 (ENSSPUG00000002919) #23	MRI1 (ENSSPUG00000002937)	COPB2 (ENSSPUG00000003003) #24	MRPS22 (ENSSPUG00000003054) #25
Anura	ANCESTRAL SPECIES	122									ENSGT00940000162537	ENSGT00950000183022.a.a.a	ENSGT00940000155511	ENSGT01030000234590.A.a.b	ENSGT00940000166029.b	ENSGT00390000016956	ENSGT00940000153313.A	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000157522	ENSGT00940000158370	ENSGT00940000156342	ENSGT00940000164578	ENSGT00940000161398	ENSGT00390000004360.a.b.b	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b.hb	ENSGT01040000240444.A.b.a.b.ib	ENSGT01100000263502.A.a.a.b	ENSGT00940000157053
Frog	MODERN SPECIES	5	dner (ENSXETG00000014758)	pid1 (ENSXETG00000014759)	mff (ENSXETG00000014760)	ENSXETG00000030969	agfg1 (ENSXETG00000014768)	tm4sf20 (ENSXETG00000014770)	mrpl44 (ENSXETG00000014771)	ENSXETG00000037822	slc19a3.2 (ENSXETG00000008390)	ENSXETG00000026822	slc19a3 (ENSXETG00000014773)	daw1 (ENSXETG00000026821)	ENSXETG00000034555	sphkap (ENSXETG00000041325)	ENSXETG00000039225	rbp1 (ENSXETG00000008249) #22	rbp2 (ENSXETG00000026818) #23	copb2 (ENSXETG00000008250) #24	mrps22 (ENSXETG00000008251) #25	ENSXETG00000008248	foxl2 (ENSXETG00000008253)	pik3cb (ENSXETG00000008254)	ENSXETG00000036947	vamp1 (ENSXETG00000008255)	per2 (ENSXETG00000008256)	hes6.2 (ENSXETG00000031348)	ENSXETG00000005911	cab39 (ENSXETG00000008260)	ENSXETG00000046751	ENSXETG00000034714	gpr55 (ENSXETG00000003020)
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000007514	ENSLLEG00000007505	SLC19A3 (ENSLLEG00000007459)	ENSLLEG00000007442	ENSLLEG00000007371	TM4SF20 (ENSLLEG00000007265)	ENSLLEG00000007239	ENSLLEG00000007220	ENSLLEG00000007206	ENSLLEG00000007192	SPHKAP (ENSLLEG00000007116)	ENSLLEG00000007102	ENSLLEG00000007091	ENSLLEG00000007063	ENSLLEG00000007050	RBP1 (ENSLLEG00000006988) #22	ENSLLEG00000006951	ENSLLEG00000006918	ENSLLEG00000006903	ENSLLEG00000006889	ENSLLEG00000006815	ENSLLEG00000006733	ENSLLEG00000006715	ENSLLEG00000006676	ENSLLEG00000006655	ENSLLEG00000006579	ENSLLEG00000006547	ENSLLEG00000006416	ENSLLEG00000006378	HADHB (ENSLLEG00000005858)	ENSLLEG00000005800
Coelacanth	MODERN SPECIES	905															NMNAT3 (ENSLACG00000006750) #21	RBP1 (ENSLACG00000007717) #22	RBP2 (ENSLACG00000008563) #23	COPB2 (ENSLACG00000009056) #24	MRPS22 (ENSLACG00000009388) #25	FOXL2 (ENSLACG00000012021)	PIK3CB (ENSLACG00000013175)	ENSLACG00000013788	ENSLACG00000013930	ENSLACG00000014431
Actinopterygii	ANCESTRAL SPECIES	80	ENSGT00950000182944.B.a	ENSGT00390000011073	ENSGT00940000156055	ENSGT00940000166703	ENSGT00530000063529.C	ENSGT00940000160622	ENSGT00390000005140.b.b	ENSGT00390000013989.a	ENSGT00950000183071.a.a.b	ENSGT00390000004600.b.a	ENSGT00940000165265	ENSGT01080000257487	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578.a.a	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT00950000183136.b.b	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b	ENSGT01100000263502.A.a.a.b
Reedfish	MODERN SPECIES	10	ap1s3a (ENSECRG00000006313)	scg2b (ENSECRG00000006306)	ENSECRG00000006298	acsl3b (ENSECRG00000006284)	farsb (ENSECRG00000006261)	SGPP2 (ENSECRG00000006254)	ENSECRG00000006249	pax3b (ENSECRG00000006222)	ENSECRG00000006209	epha4a (ENSECRG00000006165)	pxylp1 (ENSECRG00000006136) #16	ENSECRG00000006127	slc25a36a (ENSECRG00000006114) #18	ENSECRG00000006105 ##17	clstn2a (ENSECRG00000006071) #20	rbp1.2 (ENSECRG00000006044) #22	rbp2a (ENSECRG00000006038) #23	ENSECRG00000005613 #25	ENSECRG00000005533 #24	copb2 (ENSECRG00000005501) #24	ENSECRG00000005481 #24	ENSECRG00000005473	copb2 (ENSECRG00000005450) #24	mrps22 (ENSECRG00000005428) #25	foxl2b (ENSECRG00000005423)	PIK3CB (ENSECRG00000005393)	per2 (ENSECRG00000005382)	hes6 (ENSECRG00000005369)	ENSECRG00000005359	CAB39 (ENSECRG00000005333)	itm2ca (ENSECRG00000005319)
Neopterygii	ANCESTRAL SPECIES	68	ENSGT00390000016356	ENSGT00940000158159	ENSGT00550000075086	ENSGT00940000166078	ENSGT00940000166763	ENSGT00390000013989.a	ENSGT00950000183071.a.a.b	ENSGT00390000004600.b.a	ENSGT00940000165265	ENSGT00990000208723	ENSGT01030000235347	ENSGT01080000257487	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165 #23	ENSGT00900000141083.d #24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000156342	ENSGT00940000161398	ENSGT00940000164578.a.a	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT00950000183136.b.b	ENSGT01040000240444.A.b.b	ENSGT01040000240444.A.b.a.a	ENSGT01040000240444.A.b.a.b	ENSGT00390000012058.c.a
Osteoglossocephalai	ANCESTRAL SPECIES	123	ENSGT00940000155954.a	ENSGT01030000234582.e.a	ENSGT00530000063489.a	ENSGT00940000159500	ENSGT00940000166595.b	ENSGT00940000156504	ENSGT00940000156948.j	ENSGT00390000016324 #16	ENSGT00940000154369.g.b #18	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C #17	ENSGT00530000064220 #19	ENSGT00950000183086.a.a.b.h.a #20	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00940000160165.a #23	ENSGT00900000141083.c.b ##24	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000156342.c	ENSGT00940000161398.f	ENSGT00940000164578.a.a	ENSGT00390000004360.a.b.b	ENSGT00950000183115.a	ENSGT00950000183136.b.b
Clupeocephala	ANCESTRAL SPECIES	451												ENSGT00940000154369.g.a #18	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24
Euteleosteomorpha	ANCESTRAL SPECIES	63	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00940000161729.m.a	ENSGT00940000180772	ENSGT00390000011725.d	ENSGT00940000153655.A.b	ENSGT00390000011127.d	ENSGT00390000016906.a	ENSGT01030000234567.B.a.b.a.b.b	ENSGT00940000174564	ENSGT00940000165275.A	ENSGT00940000157030.c.a
Acanthomorphata	ANCESTRAL SPECIES		ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000163126.b.b	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Tiger tail seahorse	MODERN SPECIES	377	ENSHCOG00000001877	pik3r2 (ENSHCOG00000001948)	ifi30 (ENSHCOG00000001984)	ENSHCOG00000002081	RAB3A (ENSHCOG00000002125)	jund (ENSHCOG00000002134)	ENSHCOG00000002184	ENSHCOG00000002352	CTXN1 (ENSHCOG00000002404)	rab11bb (ENSHCOG00000002423)	MARCHF2 (ENSHCOG00000002433)	slc25a36a (ENSHCOG00000002442) #18	spsb4a (ENSHCOG00000002448) #17	clstn2a (ENSHCOG00000002473) #20	NMNAT3 (ENSHCOG00000002482) #21	rbp1.1 (ENSHCOG00000000700) #22
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00990000211053	ENSGT00940000161352.f.b
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00990000211053	ENSGT00940000161352.f.b
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00990000211053	ENSGT00940000161352.f.b
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00930000151041	ENSGT00940000154395.a.a.a.b.a	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Aplocheiloidei	ANCESTRAL SPECIES	19	ENSGT00930000151041	ENSGT00940000154395.a.a.a.b.a	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Mangrove rivulus	MODERN SPECIES	64	OLFML2B (ENSKMAG00000009333)	ENSKMAG00000009312	ENSKMAG00000009283	kifap3b (ENSKMAG00000009197)	PDC (ENSKMAG00000009178)	ENSKMAG00000009157	CERS4 (ENSKMAG00000009138)	CTXN1 (ENSKMAG00000009121)	TIMM44 (ENSKMAG00000009060)	rab11bb (ENSKMAG00000009033)	MARCHF2 (ENSKMAG00000009002)	slc25a36a (ENSKMAG00000008956) #18	spsb4a (ENSKMAG00000008932) #17	clstn2a (ENSKMAG00000008838) #20	NMNAT3 (ENSKMAG00000008800) #21	rbp1.1 (ENSKMAG00000008788) #22	rbp2b (ENSKMAG00000008760) #23	copb2 (ENSKMAG00000008663) ##24	dvl3a (ENSKMAG00000008628)	ap2m1a (ENSKMAG00000008592)	pcyt1aa (ENSKMAG00000008554)	ENSKMAG00000008520	DYNC1I2 (ENSKMAG00000008383)	slc25a12 (ENSKMAG00000008292)	metap1d (ENSKMAG00000008227)	itga6b (ENSKMAG00000008162)	ENSKMAG00000008097	rapgef4b (ENSKMAG00000008019)	ENSKMAG00000007980	ENSKMAG00000007931	ENSKMAG00000007901
Turquoise killifish	MODERN SPECIES	1618	prg4a (ENSNFUG00015021413)	dusp12 (ENSNFUG00015021389)	OLFML2BB (ENSNFUG00015021376)	ENSNFUG00015021367	KIFAP3B (ENSNFUG00015020250)	OLPD-R (ENSNFUG00015020202)	CERS4 (ENSNFUG00015020174)	CTXN1 (ENSNFUG00015020167)	TIMM44 (ENSNFUG00015020126)	Nfu_g_1_020481 (ENSNFUG00015020092)	MARCH2 (ENSNFUG00015020081)	slc25a36a (ENSNFUG00015020070) #18	SPSB4 (ENSNFUG00015020062) #17	clstn2a (ENSNFUG00015019721) #20	NMNAT3 (ENSNFUG00015019677) #21	NMNAT3 (ENSNFUG00015019671) #22	rbp2b (ENSNFUG00015019621) #23	COPB2 (ENSNFUG00015018238) ##24	dvl3a (ENSNFUG00015017928)	ENSNFUG00015017891	LINGO3 (ENSNFUG00015017886)	ONECUT3 (ENSNFUG00015017880)	tcf3a (ENSNFUG00015017863)	UQCR11 (ENSNFUG00015017854)	mbd3a (ENSNFUG00015017839)	MEX3D (ENSNFUG00015017831)	BTBD2 (ENSNFUG00015016901)	eef2b (ENSNFUG00015016853)	RXFP3.2A (ENSNFUG00015016841)	SIRT6 (ENSNFUG00015016584)	CDC34B (ENSNFUG00015016568)
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00930000151041	ENSGT00940000154395.a.a.a.b.a	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b.g	ENSGT00940000155353.a.a.b.h	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00930000151041	ENSGT00940000154395.a.a.a.b.a	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b.g	ENSGT00940000155353.a.a.b.h	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Poecilia	ANCESTRAL SPECIES	19	ENSGT00930000151041	ENSGT00940000154395.a.a.a.b.a	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b.g	ENSGT00940000155353.a.a.b.h	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b
NAME_6	ANCESTRAL SPECIES	228							ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b.g	ENSGT00940000155353.a.a.b.h	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b
Sailfin molly	MODERN SPECIES	214														clstn2a (ENSPLAG00000015580) #20	NMNAT3 (ENSPLAG00000015557) #21	rbp1.1 (ENSPLAG00000015546) #22	copb2 (ENSPLAG00000015524) ##24	dvl3a (ENSPLAG00000015479)	ap2m1a (ENSPLAG00000015435)	pcyt1aa (ENSPLAG00000015415)	and3 (ENSPLAG00000015393)	DYNC1I2 (ENSPLAG00000015376)	slc25a12 (ENSPLAG00000015335)	metap1d (ENSPLAG00000015302)	itga6b (ENSPLAG00000015251)	itga6b (ENSPLAG00000014740)	ENSPLAG00000000611	rapgef4b (ENSPLAG00000014664)	ENSPLAG00000014600	ENSPLAG00000014560
Amazon molly	MODERN SPECIES	422	odr4 (ENSPFOG00000005978)	ENSPFOG00000006006	prg4a (ENSPFOG00000006768)	dusp12 (ENSPFOG00000006822)	ENSPFOG00000020348	OLFML2B (ENSPFOG00000006875)	ENSPFOG00000006956	CERS4 (ENSPFOG00000007021)	TIMM44 (ENSPFOG00000007215)	rab11bb (ENSPFOG00000024114)	MARCHF2 (ENSPFOG00000007476)	slc25a36a (ENSPFOG00000007512) #18	spsb4a (ENSPFOG00000007613) #17	clstn2a (ENSPFOG00000007644) #20	NMNAT3 (ENSPFOG00000008559) #21	rbp1.1 (ENSPFOG00000023452) #22	copb2 (ENSPFOG00000008606) ##24	dvl3a (ENSPFOG00000008888)	ap2m1a (ENSPFOG00000009058)	pcyt1aa (ENSPFOG00000009131)	and3 (ENSPFOG00000009203)	DYNC1I2 (ENSPFOG00000009232)	slc25a12 (ENSPFOG00000009599)	metap1d (ENSPFOG00000009936)	itga6b (ENSPFOG00000010117)	ENSPFOG00000010742	rapgef4b (ENSPFOG00000010884)	ENSPFOG00000011308	ENSPFOG00000011459
Guppy	MODERN SPECIES	447	OLFML2B (ENSPREG00000014496)	ENSPREG00000014488	ENSPREG00000014481	kifap3b (ENSPREG00000014417)	PDC (ENSPREG00000014388)	ENSPREG00000014369	CTXN1 (ENSPREG00000014346)	TIMM44 (ENSPREG00000014295)	rab11bb (ENSPREG00000014269)	MARCHF2 (ENSPREG00000014259)	ENSPREG00000014251 #18	ENSPREG00000014238 #18	spsb4a (ENSPREG00000014221) #17	clstn2a (ENSPREG00000014196) #20	NMNAT3 (ENSPREG00000014156) #21	rbp1.1 (ENSPREG00000014144) #22	copb2 (ENSPREG00000014106) ##24	ENSPREG00000014095	dvl3a (ENSPREG00000014078)	ap2m1a (ENSPREG00000014057)	pcyt1aa (ENSPREG00000014022)	and3 (ENSPREG00000014008)	DYNC1I2 (ENSPREG00000013942)	slc25a12 (ENSPREG00000013884)	ENSPREG00000013866	metap1d (ENSPREG00000013845)	itga6b (ENSPREG00000013714)	ENSPREG00000013683	rapgef4b (ENSPREG00000013577)	ENSPREG00000013505	ENSPREG00000013439
Platyfish	MODERN SPECIES	20	dusp12 (ENSXMAG00000018722)	ENSXMAG00000027606	OLFML2B (ENSXMAG00000018729)	ENSXMAG00000026629	kifap3b (ENSXMAG00000018739)	PDC (ENSXMAG00000018762)	ENSXMAG00000018778	CTXN1 (ENSXMAG00000026623)	TIMM44 (ENSXMAG00000018819)	rab11bb (ENSXMAG00000011926)	MARCHF2 (ENSXMAG00000018861)	slc25a36a (ENSXMAG00000018866) #18	spsb4a (ENSXMAG00000018887) #17	clstn2a (ENSXMAG00000018890) #20	NMNAT3 (ENSXMAG00000018929) #21	rbp1.1 (ENSXMAG00000018933) #22	copb2 (ENSXMAG00000018937) ##24	dvl3a (ENSXMAG00000018981)	ap2m1a (ENSXMAG00000019001)	pcyt1aa (ENSXMAG00000019014)	and3 (ENSXMAG00000019029)	DYNC1I2 (ENSXMAG00000019032)	slc25a12 (ENSXMAG00000019058)	metap1d (ENSXMAG00000019080)	itga6b (ENSXMAG00000019094)	itga6b (ENSXMAG00000024556)	ENSXMAG00000019139	rapgef4b (ENSXMAG00000019145)	ENSXMAG00000022912	ENSXMAG00000019208	epha4b (ENSXMAG00000019223)
NAME_4	ANCESTRAL SPECIES	9	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b.g	ENSGT00940000155353.a.a.b.h	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Sheepshead minnow	MODERN SPECIES	467															NMNAT3 (ENSCVAG00000020804) #21	rbp1.1 (ENSCVAG00000020797) #22	copb2 (ENSCVAG00000020778) ##24	dvl3a (ENSCVAG00000020678)	ap2m1a (ENSCVAG00000020589)	pcyt1aa (ENSCVAG00000020539)	and3 (ENSCVAG00000020509)	DYNC1I2 (ENSCVAG00000020503)	slc25a12 (ENSCVAG00000020468)	metap1d (ENSCVAG00000020438)	itga6b (ENSCVAG00000020403)	ENSCVAG00000020381	itga6b (ENSCVAG00000020373)	ENSCVAG00000020353	rapgef4b (ENSCVAG00000020327)	ENSCVAG00000020242	ENSCVAG00000020163
Mummichog	MODERN SPECIES	2326							ENSFHEG00000018261	CTXN1 (ENSFHEG00000018270)	TIMM44 (ENSFHEG00000018339)	rab11bb (ENSFHEG00000018353)	MARCHF2 (ENSFHEG00000018375)	slc25a36a (ENSFHEG00000018399) #18	spsb4a (ENSFHEG00000018422) #17	clstn2a (ENSFHEG00000018475) #20	NMNAT3 (ENSFHEG00000018505) #21	rbp1.1 (ENSFHEG00000018522) #22	copb2 (ENSFHEG00000018594) ##24	dvl3a (ENSFHEG00000018651)	ap2m1a (ENSFHEG00000018703)	pcyt1aa (ENSFHEG00000018749)	and3 (ENSFHEG00000018762)	DYNC1I2 (ENSFHEG00000018845)	slc25a12 (ENSFHEG00000018890)	metap1d (ENSFHEG00000018950)	itga6b (ENSFHEG00000019221)	ENSFHEG00000019239	rapgef4b (ENSFHEG00000019375)	ENSFHEG00000019391	ENSFHEG00000019643	epha4b (ENSFHEG00000020070)	ENSFHEG00000020095
Oryzias	ANCESTRAL SPECIES	12	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00990000211053	ENSGT00940000161352.f.b
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000165265	ENSGT01030000235341.e
Indian medaka	MODERN SPECIES	10	ENSOMEG00000017267	prg4a (ENSOMEG00000017284)	ENSOMEG00000017301	dusp12 (ENSOMEG00000017380)	ENSOMEG00000017421	kifap3b (ENSOMEG00000017545)	PDC (ENSOMEG00000017603)	ENSOMEG00000017667	TIMM44 (ENSOMEG00000017767)	rab11bb (ENSOMEG00000017806)	MARCHF2 (ENSOMEG00000017834)	slc25a36a (ENSOMEG00000017859) #18	spsb4a (ENSOMEG00000017906) #17	clstn2a (ENSOMEG00000017977) #20	NMNAT3 (ENSOMEG00000018039) #21	rbp1.1 (ENSOMEG00000018083) #22	rbp2b (ENSOMEG00000018095) #23	copb2 (ENSOMEG00000018165) ##24	dvl3a (ENSOMEG00000018321)	ap2m1a (ENSOMEG00000018414)	pcyt1aa (ENSOMEG00000018447)	and3 (ENSOMEG00000018463)	DYNC1I2 (ENSOMEG00000018565)	slc25a12 (ENSOMEG00000018711)	metap1d (ENSOMEG00000000484)	itga6b (ENSOMEG00000018880)	ENSOMEG00000018948	rapgef4b (ENSOMEG00000019051)	ENSOMEG00000019124	ENSOMEG00000019148	ENSOMEG00000019163
Javanese ricefish	MODERN SPECIES	8	TPR (ENSOJAG00000011778)	prg4a (ENSOJAG00000014427)	dusp12 (ENSOJAG00000014454)	OLFML2B (ENSOJAG00000014470)	ENSOJAG00000014489	kifap3b (ENSOJAG00000014522)	PDC (ENSOJAG00000014844)	ENSOJAG00000014871	TIMM44 (ENSOJAG00000014954)	rab11bb (ENSOJAG00000015481)	MARCHF2 (ENSOJAG00000015558)	slc25a36a (ENSOJAG00000015573) #18	spsb4a (ENSOJAG00000015580) #17	clstn2a (ENSOJAG00000015617) #20	NMNAT3 (ENSOJAG00000016137) #21	rbp1.1 (ENSOJAG00000016154) #22	rbp2b (ENSOJAG00000016169) #23	copb2 (ENSOJAG00000016214) ##24	dvl3a (ENSOJAG00000017146)	ap2m1a (ENSOJAG00000017316)	pcyt1aa (ENSOJAG00000017391)	and3 (ENSOJAG00000017410)	DYNC1I2 (ENSOJAG00000017447)	slc25a12 (ENSOJAG00000018766)	metap1d (ENSOJAG00000020200)	itga6b (ENSOJAG00000020267)	ENSOJAG00000020498	rapgef4b (ENSOJAG00000020622)	ENSOJAG00000021675	epha4b (ENSOJAG00000022493)	ENSOJAG00000022740
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000161352.f.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Japanese Medaka HdrR	MODERN SPECIES	8	dusp12 (ENSORLG00000013816)	ENSORLG00000013860	ENSORLG00000024886	kifap3b (ENSORLG00000013884)	pdca (ENSORLG00000013896)	ENSORLG00000013903	ENSORLG00000026451	TIMM44 (ENSORLG00000013927)	rab11bb (ENSORLG00000013938)	ENSORLG00000013951	slc25a36a (ENSORLG00000013978) #18	spsb4a (ENSORLG00000013981) #17	ENSORLG00000026151 #21	clstn2a (ENSORLG00000022231) #20	rbp2b (ENSORLG00000028914) #23	rbp1.1 (ENSORLG00000014005) #22	copb2 (ENSORLG00000014074) ##24	dvl3a (ENSORLG00000014122)	ap2m1a (ENSORLG00000014164)	pcyt1aa (ENSORLG00000014200)	and3 (ENSORLG00000014208)	DYNC1I2 (ENSORLG00000014246)	slc25a12 (ENSORLG00000014305)	metap1d (ENSORLG00000014320)	itga6b (ENSORLG00000014364)	ENSORLG00000014379	rapgef4b (ENSORLG00000014413)	ENSORLG00000014423	ENSORLG00000014526	ENSORLG00000027827	ENSORLG00000028529
Chinese medaka	MODERN SPECIES	522	prg4a (ENSOSIG00000017475)	dusp12 (ENSOSIG00000017483)	OLFML2B (ENSOSIG00000017493)	ENSOSIG00000017499	kifap3b (ENSOSIG00000017501)	PDC (ENSOSIG00000017506)	ENSOSIG00000017515	TIMM44 (ENSOSIG00000017570)	ENSOSIG00000017572	rab11bb (ENSOSIG00000017577)	MARCHF2 (ENSOSIG00000017579)	slc25a36a (ENSOSIG00000017582) #18	spsb4a (ENSOSIG00000017585) #17	clstn2a (ENSOSIG00000017760) #20	NMNAT3 (ENSOSIG00000020465) #21	rbp1.1 (ENSOSIG00000020468) #22	rbp2b (ENSOSIG00000020472) #23	copb2 (ENSOSIG00000020483) ##24	dvl3a (ENSOSIG00000020491)	ap2m1a (ENSOSIG00000020528)	pcyt1aa (ENSOSIG00000020532)	and3 (ENSOSIG00000020533)	DYNC1I2 (ENSOSIG00000020580)	slc25a12 (ENSOSIG00000022063)	metap1d (ENSOSIG00000022361)	itga6b (ENSOSIG00000022367)	ENSOSIG00000022372	rapgef4b (ENSOSIG00000022441)	ENSOSIG00000022712	epha4b (ENSOSIG00000022815)	ENSOSIG00000022893
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Pomacentridae_A	ANCESTRAL SPECIES	18	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Amphiprion	ANCESTRAL SPECIES	56	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Orange clownfish	MODERN SPECIES	1	jund (ENSAPEG00000016308)	pgpep1 (ENSAPEG00000016314)	upf1 (ENSAPEG00000016344)	HOMER3 (ENSAPEG00000016482)	uba52 (ENSAPEG00000016505)	ENSAPEG00000016515	CTXN1 (ENSAPEG00000016527)	TIMM44 (ENSAPEG00000016535)	rab11bb (ENSAPEG00000016590)	MARCHF2 (ENSAPEG00000016600)	slc25a36a (ENSAPEG00000016623) #18	spsb4a (ENSAPEG00000016656) #17	zgc:136870 (ENSAPEG00000016668)	clstn2a (ENSAPEG00000016707) #20	NMNAT3 (ENSAPEG00000016768) #21	rbp1.1 (ENSAPEG00000016783) #22	rbp2b (ENSAPEG00000016791) #23	copb2 (ENSAPEG00000016809) ##24	dvl3a (ENSAPEG00000016879)	ap2m1a (ENSAPEG00000016947)	pcyt1aa (ENSAPEG00000016980)	and3 (ENSAPEG00000016994)	DYNC1I2 (ENSAPEG00000017015)	slc25a12 (ENSAPEG00000017081)	metap1d (ENSAPEG00000017137)	itga6b (ENSAPEG00000017165)	ENSAPEG00000017327	rapgef4b (ENSAPEG00000017407)	ENSAPEG00000017493	ENSAPEG00000017569	ENSAPEG00000017759
Clown anemonefish	MODERN SPECIES	1597														clstn2a (ENSAOCG00000020100) #20	NMNAT3 (ENSAOCG00000020036) #21	rbp1.1 (ENSAOCG00000002751) #22	rbp2b (ENSAOCG00000002783) #23	copb2 (ENSAOCG00000019988) ##24	dvl3a (ENSAOCG00000019897)	ap2m1a (ENSAOCG00000019817)	pcyt1aa (ENSAOCG00000001439)	and3 (ENSAOCG00000019759)	DYNC1I2 (ENSAOCG00000019739)	slc25a12 (ENSAOCG00000019677)	metap1d (ENSAOCG00000019615)	itga6b (ENSAOCG00000019592)	ENSAOCG00000001419	rapgef4b (ENSAOCG00000019479)	MAP3K20 (ENSAOCG00000019387)
Spiny chromis	MODERN SPECIES	62	mrap2b (ENSAPOG00000000374)	ENSAPOG00000013704	ENSAPOG00000013636	sobpb (ENSAPOG00000013625)	rock2b (ENSAPOG00000013574)	ENSAPOG00000013334	kcnf1a (ENSAPOG00000013311)	pdia6 (ENSAPOG00000013303)	hpcal1 (ENSAPOG00000013251)	ENSAPOG00000000355	ENSAPOG00000013141	ENSAPOG00000013125	ENSAPOG00000013108	ENSAPOG00000013014	NMNAT3 (ENSAPOG00000012878) #21	rbp1.1 (ENSAPOG00000012859) #22	rbp2b (ENSAPOG00000012843) #23	copb2 (ENSAPOG00000012799) ##24	dvl3a (ENSAPOG00000012678)	ap2m1a (ENSAPOG00000012661)	pcyt1aa (ENSAPOG00000012593)	and3 (ENSAPOG00000012551)
Bicolor damselfish	MODERN SPECIES	1203														clstn2a (ENSSPAG00000007630) #20	NMNAT3 (ENSSPAG00000007608) #21	rbp1.1 (ENSSPAG00000007583) #22	rbp2b (ENSSPAG00000007569) #23	copb2 (ENSSPAG00000007462) ##24	dvl3a (ENSSPAG00000007388)	ap2m1a (ENSSPAG00000007327)	pcyt1aa (ENSSPAG00000007303)
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265	ENSGT00940000175314
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00940000158959.a.b	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265	ENSGT00940000175314.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000181786	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265	ENSGT00940000175314.a
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000181786	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265	ENSGT00940000175314.a
Burton s mouthbrooder	MODERN SPECIES	306	RAB3A (ENSHBUG00000014437)	jund (ENSHBUG00000014447)	pgpep1 (ENSHBUG00000000426)	upf1 (ENSHBUG00000014694)	ENSHBUG00000014718	HOMER3 (ENSHBUG00000014740)	ENSHBUG00000014765	TIMM44 (ENSHBUG00000014769)	rab11bb (ENSHBUG00000014777)	MARCHF2 (ENSHBUG00000000436)	slc25a36a (ENSHBUG00000014826) #18	zgc:136870 (ENSHBUG00000014834)	spsb4a (ENSHBUG00000014842) #17	clstn2a (ENSHBUG00000014896) #20	NMNAT3 (ENSHBUG00000014910) #21	rbp1.1 (ENSHBUG00000014944) #22	rbp2b (ENSHBUG00000014989) #23	copb2 (ENSHBUG00000015177) ##24	dvl3a (ENSHBUG00000015268)	ap2m1a (ENSHBUG00000015302)	pcyt1aa (ENSHBUG00000015337)	DYNC1I2 (ENSHBUG00000015379)	slc25a12 (ENSHBUG00000000996)	metap1d (ENSHBUG00000015543)	itga6b (ENSHBUG00000000452)	ENSHBUG00000015594	rapgef4b (ENSHBUG00000015728)	ENSHBUG00000015760	ENSHBUG00000020163	epha4b (ENSHBUG00000020357)	ENSHBUG00000020385
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT00940000158959.a.b	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265	ENSGT00940000175314.a
P. nyererei	MODERN SPECIES	299	RAB3A (ENSPNYG00000003624)	jund (ENSPNYG00000003650)	pgpep1 (ENSPNYG00000003672)	upf1 (ENSPNYG00000003694)	HOMER3 (ENSPNYG00000003778)	ENSPNYG00000003807	uba52 (ENSPNYG00000003911)	TIMM44 (ENSPNYG00000004070)	rab11bb (ENSPNYG00000004098)	MARCHF2 (ENSPNYG00000004130)	slc25a36a (ENSPNYG00000004157) #18	spsb4a (ENSPNYG00000004191) #17	zgc:136870 (ENSPNYG00000004207)	clstn2a (ENSPNYG00000004231) #20	NMNAT3 (ENSPNYG00000004294) #21	rbp1.1 (ENSPNYG00000004312) #22	rbp2b (ENSPNYG00000004334) #23	copb2 (ENSPNYG00000004364) ##24	dvl3a (ENSPNYG00000004421)	ap2m1a (ENSPNYG00000004468)	pcyt1aa (ENSPNYG00000004498)	DYNC1I2 (ENSPNYG00000004520)	slc25a12 (ENSPNYG00000004566)	metap1d (ENSPNYG00000004632)	itga6b (ENSPNYG00000004683)	ENSPNYG00000004709	rapgef4b (ENSPNYG00000004732)	ENSPNYG00000004795	ENSPNYG00000004828	epha4b (ENSPNYG00000005040)	ENSPNYG00000005091
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT00940000164492.a.a	ENSGT00940000158959.a.b	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT01030000234515.a.b.b.b	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00940000155442.o.a	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265	ENSGT00940000175314.a
Eastern happy	MODERN SPECIES	9	ENSACLG00000007240	RAB3A (ENSACLG00000007231)	jund (ENSACLG00000007226)	pgpep1 (ENSACLG00000007217)	upf1 (ENSACLG00000007181)	HOMER3 (ENSACLG00000007133)	CERS4 (ENSACLG00000007099)	TIMM44 (ENSACLG00000007080)	rab11bb (ENSACLG00000007076)	MARCHF2 (ENSACLG00000007071)	slc25a36a (ENSACLG00000007062) #18	zgc:136870 (ENSACLG00000007054)	spsb4a (ENSACLG00000007040) #17	clstn2a (ENSACLG00000006605) #20	NMNAT3 (ENSACLG00000006594) #21	rbp1.1 (ENSACLG00000006586) #22	rbp2b (ENSACLG00000006428) #23	copb2 (ENSACLG00000006378) ##24	dvl3a (ENSACLG00000006365)	ap2m1a (ENSACLG00000006350)	pcyt1aa (ENSACLG00000006334)	DYNC1I2 (ENSACLG00000006306)	slc25a12 (ENSACLG00000006243)	metap1d (ENSACLG00000006206)	itga6b (ENSACLG00000005796)	ENSACLG00000005763	rapgef4b (ENSACLG00000005633)	ENSACLG00000005595	ENSACLG00000004244	epha4b (ENSACLG00000003877)	ENSACLG00000003855
Zebra mbuna	MODERN SPECIES	1100	RAB3A (ENSMZEG00005003592)	jund (ENSMZEG00005003568)	pgpep1 (ENSMZEG00005003549)	upf1 (ENSMZEG00005003489)	HOMER3 (ENSMZEG00005003452)	ENSMZEG00005003430	CERS4 (ENSMZEG00005003420)	TIMM44 (ENSMZEG00005003361)	rab11bb (ENSMZEG00005003352)	MARCHF2 (ENSMZEG00005003339)	slc25a36a (ENSMZEG00005003295) #18	zgc:136870 (ENSMZEG00005003269)	spsb4a (ENSMZEG00005003260) #17	clstn2a (ENSMZEG00005003196) #20	NMNAT3 (ENSMZEG00005003102) #21	rbp1.1 (ENSMZEG00005003083) #22	rbp2b (ENSMZEG00005002902) #23	copb2 (ENSMZEG00005002832) ##24	dvl3a (ENSMZEG00005002747)	ap2m1a (ENSMZEG00005002719)	pcyt1aa (ENSMZEG00005002705)	DYNC1I2 (ENSMZEG00005002671)	slc25a12 (ENSMZEG00005002619)	metap1d (ENSMZEG00005002593)	itga6b (ENSMZEG00005002565)	ENSMZEG00005002549	rapgef4b (ENSMZEG00005002499)	ENSMZEG00005002479	ENSMZEG00005002470	ENSMZEG00005000681	epha4b (ENSMZEG00005000490)
Lyretail cichlid	MODERN SPECIES	300	jund (ENSNBRG00000000825)	pgpep1 (ENSNBRG00000000761)	upf1 (ENSNBRG00000000670)	ENSNBRG00000000632	HOMER3 (ENSNBRG00000000598)	uba52 (ENSNBRG00000000583)	CERS4 (ENSNBRG00000000500)	TIMM44 (ENSNBRG00000000376)	rab11bb (ENSNBRG00000000372)	MARCHF2 (ENSNBRG00000000345)	slc25a36a (ENSNBRG00000000318) #18	zgc:136870 (ENSNBRG00000022923)	spsb4a (ENSNBRG00000022916) #17	clstn2a (ENSNBRG00000022882) #20	NMNAT3 (ENSNBRG00000022863) #21	rbp1.1 (ENSNBRG00000022813) #22	rbp2b (ENSNBRG00000022801) #23	copb2 (ENSNBRG00000022777) ##24	dvl3a (ENSNBRG00000022744)	ap2m1a (ENSNBRG00000022722)	pcyt1aa (ENSNBRG00000022706)	DYNC1I2 (ENSNBRG00000022681)	slc25a12 (ENSNBRG00000022645)	metap1d (ENSNBRG00000022632)	itga6b (ENSNBRG00000022386)	ENSNBRG00000022303	rapgef4b (ENSNBRG00000022254)	ENSNBRG00000022209	ENSNBRG00000022041	epha4b (ENSNBRG00000021322)	ENSNBRG00000021165
Midas cichlid	MODERN SPECIES	235	upf1 (ENSACIG00000019949)	lzic (ENSACIG00000019942)	HOMER3 (ENSACIG00000019924)	uba52 (ENSACIG00000019707)	ENSACIG00000019677	CTXN1 (ENSACIG00000019666)	TIMM44 (ENSACIG00000019644)	rab11bb (ENSACIG00000019631)	MARCHF2 (ENSACIG00000019618)	slc25a36a (ENSACIG00000019600) #18	zgc:136870 (ENSACIG00000019585)	spsb4a (ENSACIG00000019576) #17	ENSACIG00000019567	clstn2a (ENSACIG00000019526) #20	NMNAT3 (ENSACIG00000019503) #21	rbp1.1 (ENSACIG00000019416) #22	rbp2b (ENSACIG00000019401) #23	copb2 (ENSACIG00000019369) ##24	dvl3a (ENSACIG00000019339)	ap2m1a (ENSACIG00000019325)	pcyt1aa (ENSACIG00000019309)	ENSACIG00000019302	DYNC1I2 (ENSACIG00000019284)	slc25a12 (ENSACIG00000019271)	metap1d (ENSACIG00000019257)	itga6b (ENSACIG00000019171)	ENSACIG00000019156	rapgef4b (ENSACIG00000019105)	ENSACIG00000019085	ENSACIG00000018936
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT00990000206484	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00990000211053	ENSGT00940000161352.f.b
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT00990000206484	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00990000211053	ENSGT00940000154076.B.b
Carangaria	ANCESTRAL SPECIES	5	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00990000211053	ENSGT00940000154076.B.b
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00940000158959.a.b	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT00990000206484	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00990000211053	ENSGT00940000154076.B.b
Turbot	MODERN SPECIES	19	ENSSMAG00000005141	jund (ENSSMAG00000005129)	pgpep1 (ENSSMAG00000005111)	upf1 (ENSSMAG00000005055)	ENSSMAG00000005036	ENSSMAG00000004963	ENSSMAG00000004955	ENSSMAG00000004929	rab11bb (ENSSMAG00000004922)	ENSSMAG00000004909	slc25a36a (ENSSMAG00000004893) #18	ENSSMAG00000004876	spsb4a (ENSSMAG00000004857) #17	clstn2a (ENSSMAG00000004743) #20	NMNAT3 (ENSSMAG00000022760) #21	rbp1.1 (ENSSMAG00000004704) #22	rbp2b (ENSSMAG00000020703) #23	copb2 (ENSSMAG00000004635) ##24	dvl3a (ENSSMAG00000004618)	ENSSMAG00000004560	ENSSMAG00000004543	ENSSMAG00000004527	DYNC1I2 (ENSSMAG00000004501)	ENSSMAG00000004437	metap1d (ENSSMAG00000004402)	itga6b (ENSSMAG00000004319)	ENSSMAG00000004303	ENSSMAG00000004250	ENSSMAG00000004198	ENSSMAG00000004058	ENSSMAG00000003972
Tongue sole	MODERN SPECIES	12	ENSCSEG00000012026	ptger4c (ENSCSEG00000012031)	pif1 (ENSCSEG00000012036)	ENSCSEG00000012053	nsun4 (ENSCSEG00000012057)	dmbx1a (ENSCSEG00000012068)	ENSCSEG00000012095	CTXN1 (ENSCSEG00000012121)	TIMM44 (ENSCSEG00000012127)	rab11bb (ENSCSEG00000012149)	MARCHF2 (ENSCSEG00000012156)	slc25a36a (ENSCSEG00000012199) #18	spsb4a (ENSCSEG00000012242) #17	clstn2a (ENSCSEG00000012265) #20	NMNAT3 (ENSCSEG00000012360) #21	rbp1.1 (ENSCSEG00000012366) #22	copb2 (ENSCSEG00000012387) ##24	dvl3a (ENSCSEG00000012425)	ap2m1a (ENSCSEG00000012443)	pcyt1a (ENSCSEG00000013124)	and3 (ENSCSEG00000013163)	DYNC1I2 (ENSCSEG00000013179)	slc25a12 (ENSCSEG00000013220)	metap1d (ENSCSEG00000013260)	itga6b (ENSCSEG00000013305)	ENSCSEG00000013346	ENSCSEG00000013353	rapgef4b (ENSCSEG00000013369)	ENSCSEG00000013454	ENSCSEG00000013469	ENSCSEG00000013476
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Barramundi perch	MODERN SPECIES	69	jund (ENSLCAG00010021531)	pgpep1 (ENSLCAG00010021529)	upf1 (ENSLCAG00010021515)	HOMER3 (ENSLCAG00010021508)	uba52 (ENSLCAG00010021500)	CERS4 (ENSLCAG00010021499)	CTXN1 (ENSLCAG00010021496)	TIMM44 (ENSLCAG00010021394)	rab11bb (ENSLCAG00010021340)	MARCHF2 (ENSLCAG00010021331)	slc25a36a (ENSLCAG00010021326) #18	zgc:136870 (ENSLCAG00010021318)	spsb4a (ENSLCAG00010021315) #17	clstn2a (ENSLCAG00010021304) #20	NMNAT3 (ENSLCAG00010021301) #21	rbp1.1 (ENSLCAG00010021298) #22	rbp2b (ENSLCAG00010021293) #23	copb2 (ENSLCAG00010020835) ##24	dvl3a (ENSLCAG00010020676)	ap2m1a (ENSLCAG00010020671)	pcyt1aa (ENSLCAG00010020649)	and3 (ENSLCAG00010020638)	DYNC1I2 (ENSLCAG00010020244)	slc25a12 (ENSLCAG00010020138)	metap1d (ENSLCAG00010020111)	itga6b (ENSLCAG00010019951)	ENSLCAG00010019895	rapgef4b (ENSLCAG00010019866)	ENSLCAG00010019859	ENSLCAG00010019336	epha4b (ENSLCAG00010019077)
Seriola	ANCESTRAL SPECIES		ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Yellowtail amberjack	MODERN SPECIES	3160	jund (ENSSLDG00000020919)	pgpep1 (ENSSLDG00000020900)	upf1 (ENSSLDG00000020868)	HOMER3 (ENSSLDG00000020840)	uba52 (ENSSLDG00000020739)	CERS4 (ENSSLDG00000020711)	CTXN1 (ENSSLDG00000020704)	TIMM44 (ENSSLDG00000020686)	rab11bb (ENSSLDG00000020676)	MARCHF2 (ENSSLDG00000020670)	slc25a36a (ENSSLDG00000020649) #18	zgc:136870 (ENSSLDG00000020640)	spsb4a (ENSSLDG00000020633) #17	clstn2a (ENSSLDG00000020561) #20	NMNAT3 (ENSSLDG00000020535) #21	rbp1.1 (ENSSLDG00000020526) #22	rbp2b (ENSSLDG00000020513) #23	copb2 (ENSSLDG00000020433) ##24	ENSSLDG00000020405	dvl3a (ENSSLDG00000020388)	ap2m1a (ENSSLDG00000020332)	pcyt1aa (ENSSLDG00000020304)	and3 (ENSSLDG00000020294)	DYNC1I2 (ENSSLDG00000020217)	slc25a12 (ENSSLDG00000020138)	metap1d (ENSSLDG00000020116)	itga6b (ENSSLDG00000020060)	ENSSLDG00000020020	rapgef4b (ENSSLDG00000019964)	ENSSLDG00000019929	ENSSLDG00000019745
Greater amberjack	MODERN SPECIES	83	jund (ENSSDUG00000013277)	pgpep1 (ENSSDUG00000013291)	upf1 (ENSSDUG00000013320)	HOMER3 (ENSSDUG00000013419)	uba52 (ENSSDUG00000013436)	CERS4 (ENSSDUG00000013462)	CTXN1 (ENSSDUG00000013526)	TIMM44 (ENSSDUG00000013532)	rab11bb (ENSSDUG00000013558)	MARCHF2 (ENSSDUG00000013566)	slc25a36a (ENSSDUG00000013585) #18	spsb4a (ENSSDUG00000013610) #17	zgc:136870 (ENSSDUG00000013620)	clstn2a (ENSSDUG00000013636) #20	NMNAT3 (ENSSDUG00000013697) #21	rbp1.1 (ENSSDUG00000013706) #22	rbp2b (ENSSDUG00000013743) #23	copb2 (ENSSDUG00000013764) ##24	dvl3a (ENSSDUG00000013838)	ap2m1a (ENSSDUG00000013877)	pcyt1aa (ENSSDUG00000013919)	and3 (ENSSDUG00000013946)	DYNC1I2 (ENSSDUG00000013954)	slc25a12 (ENSSDUG00000014017)	metap1d (ENSSDUG00000014092)	itga6b (ENSSDUG00000014125)	ENSSDUG00000014202	rapgef4b (ENSSDUG00000014259)	ENSSDUG00000014339	ENSSDUG00000014373	epha4b (ENSSDUG00000014552)
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Zig-zag eel	MODERN SPECIES	8	jund (ENSMAMG00000006203)	pgpep1 (ENSMAMG00000006217)	upf1 (ENSMAMG00000006229)	ENSMAMG00000006299	uba52 (ENSMAMG00000006321)	ENSMAMG00000006327	ENSMAMG00000006355	ENSMAMG00000006367	rab11bb (ENSMAMG00000006378)	ENSMAMG00000006383	ENSMAMG00000024459 #18	spsb4a (ENSMAMG00000006429) #17	zgc:136870 (ENSMAMG00000006438)	clstn2a (ENSMAMG00000006456) #20	NMNAT3 (ENSMAMG00000006484) #21	rbp1.1 (ENSMAMG00000006493) #22	rbp2b (ENSMAMG00000006509) #23	copb2 (ENSMAMG00000006528) ##24	ENSMAMG00000006605	ENSMAMG00000006654	ENSMAMG00000006685	ENSMAMG00000006711	DYNC1I2 (ENSMAMG00000006738)	ENSMAMG00000006786	metap1d (ENSMAMG00000024396)	itga6b (ENSMAMG00000006870)	ENSMAMG00000006891	ENSMAMG00000006913	ENSMAMG00000007022	ENSMAMG00000007048	ENSMAMG00000007260
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00940000158959.a.b	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Climbing perch	MODERN SPECIES	8	ENSATEG00000016038	jund (ENSATEG00000017942)	pgpep1 (ENSATEG00000017928)	upf1 (ENSATEG00000017867)	ENSATEG00000017747	ENSATEG00000017729	ENSATEG00000017721	TIMM44 (ENSATEG00000029811)	rab11bb (ENSATEG00000017696)	ENSATEG00000017679	ENSATEG00000017649 #18	spsb4a (ENSATEG00000017626) #17	zgc:136870 (ENSATEG00000025289)	clstn2a (ENSATEG00000017562) #20	NMNAT3 (ENSATEG00000017549) #21	rbp1.1 (ENSATEG00000017531) #22	rbp2b (ENSATEG00000017508) #23	copb2 (ENSATEG00000017430) ##24	ENSATEG00000017381	ENSATEG00000017335	ENSATEG00000017306	ENSATEG00000017285	DYNC1I2 (ENSATEG00000017227)	ENSATEG00000017182	METAP1D (ENSATEG00000017096)	ENSATEG00000017036	ENSATEG00000016949	ENSATEG00000016888	ENSATEG00000016658	ENSATEG00000016598	ENSATEG00000016571
Siamese fighting fish	MODERN SPECIES	8	pik3r2 (ENSBSLG00000026300)	ifi30 (ENSBSLG00000026282)	ENSBSLG00000026267	RAB3A (ENSBSLG00000026265)	jund (ENSBSLG00000026263)	upf1 (ENSBSLG00000026232)	HOMER3 (ENSBSLG00000026184)	CERS4 (ENSBSLG00000026180)	TIMM44 (ENSBSLG00000026140)	rab11bb (ENSBSLG00000026102)	MARCHF2 (ENSBSLG00000026100)	slc25a36a (ENSBSLG00000026093) #18	spsb4a (ENSBSLG00000026084) #17	clstn2a (ENSBSLG00000026017) #20	NMNAT3 (ENSBSLG00000025789) #21	rbp1.1 (ENSBSLG00000025786) #22	rbp2b (ENSBSLG00000025784) #23	copb2 (ENSBSLG00000025730) ##24	dvl3a (ENSBSLG00000025490)	ap2m1a (ENSBSLG00000025307)	pcyt1aa (ENSBSLG00000025304)	and3 (ENSBSLG00000025301)	DYNC1I2 (ENSBSLG00000025146)	slc25a12 (ENSBSLG00000024692)	metap1d (ENSBSLG00000024664)	itga6b (ENSBSLG00000024452)	ENSBSLG00000024401	rapgef4b (ENSBSLG00000024113)	ENSBSLG00000024079	epha4b (ENSBSLG00000022440)	ENSBSLG00000022299
Eupercaria	ANCESTRAL SPECIES	22	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT00990000206484	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Tetraodontidae	ANCESTRAL SPECIES	13	ENSGT00940000158959.a.b	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT00990000206484	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265	ENSGT00940000174809
Fugu	MODERN SPECIES	14	RAB3A (ENSTRUG00000011189)	jund (ENSTRUG00000024983)	pgpep1 (ENSTRUG00000026311)	upf1 (ENSTRUG00000000150)	HOMER3 (ENSTRUG00000000171)	ENSTRUG00000000191	CTXN1 (ENSTRUG00000000204)	TIMM44 (ENSTRUG00000000206)	rab11bb (ENSTRUG00000033264)	MARCHF2 (ENSTRUG00000000243)	slc25a36a (ENSTRUG00000000258) #18	ENSTRUG00000000285	spsb4a (ENSTRUG00000023923) #17	clstn2a (ENSTRUG00000000290) #20	NMNAT3 (ENSTRUG00000000361) #21	rbp1.1 (ENSTRUG00000000390) #22	copb2 (ENSTRUG00000000411) ##24	dvl3a (ENSTRUG00000000483)	ap2m1a (ENSTRUG00000000587)	pcyt1aa (ENSTRUG00000000674)	and3 (ENSTRUG00000025029)	ENSTRUG00000000748	slc25a12 (ENSTRUG00000000852)	ENSTRUG00000001321	ENSTRUG00000002461	rapgef4b (ENSTRUG00000002566)	ENSTRUG00000004366	epha4b (ENSTRUG00000006416)	ENSTRUG00000031436	ccl20 (ENSTRUG00000025674)	ENSTRUG00000007447
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Ballan wrasse	MODERN SPECIES	218	RAB3A (ENSLBEG00000014792)	jund (ENSLBEG00000014823)	pgpep1 (ENSLBEG00000014837)	upf1 (ENSLBEG00000014862)	HOMER3 (ENSLBEG00000014982)	ENSLBEG00000015169	CTXN1 (ENSLBEG00000015199)	TIMM44 (ENSLBEG00000015213)	rab11bb (ENSLBEG00000015248)	MARCHF2 (ENSLBEG00000015279)	slc25a36a (ENSLBEG00000015309) #18	spsb4a (ENSLBEG00000015356) #17	zgc:136870 (ENSLBEG00000015372)	clstn2a (ENSLBEG00000015393) #20	NMNAT3 (ENSLBEG00000015448) #21	rbp1.1 (ENSLBEG00000015461) #22	rbp2b (ENSLBEG00000015473) #23	copb2 (ENSLBEG00000015514) ##24	dvl3a (ENSLBEG00000015569)	ENSLBEG00000015680
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Perciformes	ANCESTRAL SPECIES	5	ENSGT00940000158959.a.b	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.f	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Perciformes_a	ANCESTRAL SPECIES	17	ENSGT00940000158959.a.b	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.f	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Pike perch	MODERN SPECIES	55	ENSSLUG00000004338	RAB3A (ENSSLUG00000004254)	jund (ENSSLUG00000004248)	pgpep1 (ENSSLUG00000004242)	upf1 (ENSSLUG00000004153)	HOMER3 (ENSSLUG00000004119)	ENSSLUG00000004097	CTXN1 (ENSSLUG00000004074)	TIMM44 (ENSSLUG00000003631)	rab11bb (ENSSLUG00000003397)	MARCHF2 (ENSSLUG00000003365)	slc25a36a (ENSSLUG00000003329) #18	spsb4a (ENSSLUG00000003305) #17	clstn2a (ENSSLUG00000001936) #20	NMNAT3 (ENSSLUG00000001488) #21	rbp1.1 (ENSSLUG00000001482) #22	rbp2b (ENSSLUG00000024153) #23	copb2 (ENSSLUG00000023763) ##24	dvl3a (ENSSLUG00000023682)	ap2m1a (ENSSLUG00000023669)	pcyt1aa (ENSSLUG00000023650)	and3 (ENSSLUG00000023638)	DYNC1I2 (ENSSLUG00000021578)	slc25a12 (ENSSLUG00000019402)	metap1d (ENSSLUG00000019296)	ENSSLUG00000018774	rapgef4b (ENSSLUG00000018395)	ENSSLUG00000018366	ENSSLUG00000018016	epha4b (ENSSLUG00000017971)	ENSSLUG00000017961
Channel bull blenny	MODERN SPECIES	8	jund (ENSCGOG00000015574)	RAB3A (ENSCGOG00000015547)	pgpep1 (ENSCGOG00000015544)	upf1 (ENSCGOG00000015291)	HOMER3 (ENSCGOG00000015280)	uba52 (ENSCGOG00000015279)	ENSCGOG00000015260	CTXN1 (ENSCGOG00000015256)	TIMM44 (ENSCGOG00000014872)	rab11bb (ENSCGOG00000014861)	MARCHF2 (ENSCGOG00000014860)	slc25a36a (ENSCGOG00000014854) #18	spsb4a (ENSCGOG00000014851) #17	clstn2a (ENSCGOG00000014188) #20	NMNAT3 (ENSCGOG00000014162) #21	rbp1.1 (ENSCGOG00000014153) #22	rbp2b (ENSCGOG00000014126) #23	copb2 (ENSCGOG00000013176) ##24	dvl3a (ENSCGOG00000012594)	ap2m1a (ENSCGOG00000012546)	pcyt1aa (ENSCGOG00000012307)	and3 (ENSCGOG00000012296)	ENSCGOG00000010097	slc25a12 (ENSCGOG00000022233)	metap1d (ENSCGOG00000022166)	ITGA6 (ENSCGOG00000021796)	ENSCGOG00000021769	rapgef4b (ENSCGOG00000021434)	ENSCGOG00000021341	ENSCGOG00000021212	epha4b (ENSCGOG00000019000)
Cottioidei	ANCESTRAL SPECIES	15	ENSGT00940000158959.a.b	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.f	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Lumpfish	MODERN SPECIES	8	jund (ENSCLMG00005009472)	pgpep1 (ENSCLMG00005009453)	upf1 (ENSCLMG00005009276)	ENSCLMG00005009267	ENSCLMG00005009265	uba52 (ENSCLMG00005009262)	CERS4 (ENSCLMG00005009260)	CTXN1 (ENSCLMG00005009257)	TIMM44 (ENSCLMG00005009244)	rab11bb (ENSCLMG00005009159)	MARCHF2 (ENSCLMG00005009155)	slc25a36a (ENSCLMG00005009154) #18	spsb4a (ENSCLMG00005009153) #17	clstn2a (ENSCLMG00005009148) #20	NMNAT3 (ENSCLMG00005009145) #21	rbp1.1 (ENSCLMG00005009141) #22	rbp2b (ENSCLMG00005009140) #23	copb2 (ENSCLMG00005008047) ##24	dvl3a (ENSCLMG00005007983)	ap2m1a (ENSCLMG00005007959)	pcyt1aa (ENSCLMG00005007903)	and3 (ENSCLMG00005007900)	DYNC1I2 (ENSCLMG00005007699)	SLC25A12 (ENSCLMG00005002153)	metap1d (ENSCLMG00005002132)	ITGA6 (ENSCLMG00005001716)	rapgef4b (ENSCLMG00005008934)	MAP3K20 (ENSCLMG00005008789)	ENSCLMG00005008786	ENSCLMG00005008785	ENSCLMG00005008784
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Gilthead seabream	MODERN SPECIES	13	ENSSAUG00010019339	ENSSAUG00010019336	ENSSAUG00010019331	arhgap12b (ENSSAUG00010016958)	ENSSAUG00010016918	KIF5B (ENSSAUG00010013793)	pold3 (ENSSAUG00010013750)	ENSSAUG00010013200	CTXN1 (ENSSAUG00010013180)	rab11bb (ENSSAUG00010013144)	TIMM44 (ENSSAUG00010012552)	slc25a36a (ENSSAUG00010012537) #18	spsb4a (ENSSAUG00010012534) #17	clstn2a (ENSSAUG00010027604) #20	NMNAT3 (ENSSAUG00010027602) #21	rbp1.1 (ENSSAUG00010027601) #22	rbp2b (ENSSAUG00010027600) #23	copb2 (ENSSAUG00010027590) ##24	dvl3a (ENSSAUG00010027548)	ap2m1a (ENSSAUG00010027545)	pcyt1aa (ENSSAUG00010027543)	and3 (ENSSAUG00010027542)	DYNC1I2 (ENSSAUG00010027523)	slc25a12 (ENSSAUG00010027446)	metap1d (ENSSAUG00010027416)	itga6b (ENSSAUG00010027382)	ENSSAUG00010027365	rapgef4b (ENSSAUG00010027304)	ENSSAUG00010027286	ENSSAUG00010027017	epha4b (ENSSAUG00010026832)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00390000005067.b	ENSGT00940000155442.o	ENSGT00940000155963.e	ENSGT00940000157735	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00940000156075.a.b	ENSGT00940000163262.b	ENSGT00940000154076.B.b	ENSGT00940000165265
Large yellow croaker	MODERN SPECIES	483	jund (ENSLCRG00005023638)	pgpep1 (ENSLCRG00005023637)	upf1 (ENSLCRG00005023597)	HOMER3 (ENSLCRG00005023593)	uba52 (ENSLCRG00005023591)	ENSLCRG00005023590	ENSLCRG00005023589	TIMM44 (ENSLCRG00005023576)	rab11bb (ENSLCRG00005023575)	MARCHF2 (ENSLCRG00005023574)	slc25a36a (ENSLCRG00005023573) #18	zgc:136870 (ENSLCRG00005023572)	spsb4a (ENSLCRG00005023571) #17	clstn2a (ENSLCRG00005023521) #20	NMNAT3 (ENSLCRG00005023515) #21	rbp1.1 (ENSLCRG00005023514) #22	rbp2b (ENSLCRG00005023513) #23	copb2 (ENSLCRG00005023427) ##24	dvl3a (ENSLCRG00005023423)	ap2m1a (ENSLCRG00005023420)	pcyt1aa (ENSLCRG00005023416)	and3 (ENSLCRG00005023413)	DYNC1I2 (ENSLCRG00005022746)	slc25a12 (ENSLCRG00005022120)	metap1d (ENSLCRG00005022102)	itga6b (ENSLCRG00005021995)	ENSLCRG00005021988	rapgef4b (ENSLCRG00005021982)	ENSLCRG00005021976	ENSLCRG00005021919	epha4b (ENSLCRG00005021730)
European seabass	MODERN SPECIES		ENSDLAG00005003922	ENSDLAG00005026750	jund (ENSDLAG00005033524)	upf1 (ENSDLAG00005005647)	ENSDLAG00005006531	ENSDLAG00005006568	ENSDLAG00005006586	ENSDLAG00005031877	rab11bb (ENSDLAG00005006977)	ENSDLAG00005007195	ENSDLAG00005007214 #18	spsb4a (ENSDLAG00005007295) #17	zgc:136870 (ENSDLAG00005007302)	clstn2a (ENSDLAG00005007311) #20	NMNAT3 (ENSDLAG00005007373) #21	rbp1.1 (ENSDLAG00005027822) #22	rbp2b (ENSDLAG00005007381) #23	copb2 (ENSDLAG00005007428) ##24	ENSDLAG00005008457	ENSDLAG00005008772	ENSDLAG00005008795	ENSDLAG00005008952	DYNC1I2 (ENSDLAG00005009088)	ENSDLAG00005012453	metap1d (ENSDLAG00005014493)	itga6b (ENSDLAG00005014588)	ENSDLAG00005014829	ENSDLAG00005014910	ENSDLAG00005017139	ENSDLAG00005017303	ENSDLAG00005019620
Pinecone sodierfish	MODERN SPECIES	8	pgpep1 (ENSMMDG00005015307)	upf1 (ENSMMDG00005015515)	HOMER3 (ENSMMDG00005016621)	uba52 (ENSMMDG00005016682)	ENSMMDG00005016688	CTXN1 (ENSMMDG00005016693)	TIMM44 (ENSMMDG00005016705)	rab11bb (ENSMMDG00005016770)	MARCHF2 (ENSMMDG00005016775)	slc25a36a (ENSMMDG00005016779) #18	spsb4a (ENSMMDG00005016781) #17	zgc:136870 (ENSMMDG00005016783)	clstn2a (ENSMMDG00005016797) #20	ENSMMDG00005016891	NMNAT3 (ENSMMDG00005016893) #21	rbp1.1 (ENSMMDG00005016895) #22	rbp2b (ENSMMDG00005016897) #23	copb2 (ENSMMDG00005016919) ##24	dvl3a (ENSMMDG00005018119)	ap2m1a (ENSMMDG00005018230)	pcyt1aa (ENSMMDG00005018238)	and3 (ENSMMDG00005018246)	DYNC1I2 (ENSMMDG00005018308)	slc25a12 (ENSMMDG00005021392)	metap1d (ENSMMDG00005021571)	itga6b (ENSMMDG00005021580)	ENSMMDG00005021594	rapgef4b (ENSMMDG00005021599)	rapgef4b (ENSMMDG00005021605)	ENSMMDG00005021609	ENSMMDG00005021626
Cod	MODERN SPECIES	21	ENSGMOG00000000694	ENSGMOG00000000685	ENSGMOG00000000668	ENSGMOG00000024170	ENSGMOG00000018197	ENSGMOG00000010623	ENSGMOG00000027799	ENSGMOG00000028248	ENSGMOG00000031425	ENSGMOG00000009211	ENSGMOG00000009200	slc25a36a (ENSGMOG00000023978) #18	spsb4a (ENSGMOG00000034486) #17	clstn2a (ENSGMOG00000009159) #20	NMNAT3 (ENSGMOG00000007890) #21	rbp1.1 (ENSGMOG00000026517) #22	rbp2b (ENSGMOG00000035830) #23	copb2 (ENSGMOG00000007877) ##24	ENSGMOG00000007864	ENSGMOG00000007857	ENSGMOG00000007851	ENSGMOG00000025298	DYNC1I2 (ENSGMOG00000018897)	ENSGMOG00000018887	metap1d (ENSGMOG00000018879)	itga6b (ENSGMOG00000018855)	ENSGMOG00000033645	ENSGMOG00000018793	ENSGMOG00000018687	ENSGMOG00000031643	ENSGMOG00000026037
Protacanthopterygii	ANCESTRAL SPECIES	60	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.c	ENSGT00940000157413.h	ENSGT00940000158081.o.b	ENSGT00940000153593.e.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182903.a.a.d	ENSGT00940000159223.d	ENSGT00940000157384.a	ENSGT00940000161729.m.a	ENSGT00390000011725.d	ENSGT00940000153655.A.b	ENSGT00390000011127.d	ENSGT00390000016906.a	ENSGT01030000234567.B.a.b.a.b.b	ENSGT00940000174564	ENSGT00940000165275.A	ENSGT00940000157030.c.a	ENSGT00940000155435.A.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	76	ENSGT00940000164492.a.a.f	ENSGT00940000158959.a.a.a.b	ENSGT00940000162806.b.a.h	ENSGT00390000015368.a.a.c.g	ENSGT00940000157413.h.a	ENSGT00940000158081.o.b.d	ENSGT00940000153593.e.b.h	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b.a	ENSGT00940000163126.a.a.d	ENSGT00940000158995.b.b	ENSGT00940000154369.g.a.h #18	ENSGT01030000234629.C.a.b #17	ENSGT00950000183086.a.a.b.h.b.d #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.a #22	ENSGT00900000141083.c.a.a ##24	ENSGT00940000163467.a.b.b.a.b.e.b	ENSGT00950000182903.a.a.d.e	ENSGT00940000159223.d.a	ENSGT00940000157384.a.d	ENSGT00940000161729.m.a.b	ENSGT00390000011725.d.z	ENSGT00940000153655.A.b	ENSGT00990000209702	ENSGT00390000011127.d.d	ENSGT00390000016906.a	ENSGT01030000234567.B.a.b.a.b.b	ENSGT00940000174564.e	ENSGT00940000165275.A	ENSGT00940000157030.c.a.f
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00940000158959.a.a.a.b	ENSGT00940000162806.b.a.h	ENSGT00390000015368.a.a.c.g	ENSGT00940000157413.h.a	ENSGT00940000158081.o.b.d	ENSGT00940000153593.e.b.g.a	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b.a	ENSGT00940000163126.a.a.d	ENSGT00940000158995.b.b	ENSGT00940000154369.g.a.h #18	ENSGT01030000234629.C.a.b #17	ENSGT00950000183086.a.a.b.h.b.d #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.a.b #22	ENSGT00940000159675.a.a #22	ENSGT00900000141083.c.a.a ##24	ENSGT00940000163467.a.b.b.a.b.e.b	ENSGT00950000182903.a.a.d.e	ENSGT00940000159223.d.a	ENSGT00940000157384.a.d	ENSGT00940000161729.m.a.b.a.a	ENSGT00390000011725.d.z	ENSGT00940000153655.A.b	ENSGT00990000209702	ENSGT00390000011127.d.d	ENSGT00390000016906.a	ENSGT01030000234567.B.a.b.a.b.b	ENSGT00940000174564.e	ENSGT00940000165275.A	ENSGT00940000157030.c.a.f
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT00940000164492.a.a.f	ENSGT00940000158959.a.a.a.b	ENSGT00940000162806.b.a.h	ENSGT00390000015368.a.a.c.g	ENSGT00940000157413.h.a	ENSGT00940000158081.o.b.d	ENSGT00940000153593.e.b.g.a	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b.a	ENSGT00940000163126.a.a.d	ENSGT00940000158995.b.b	ENSGT00940000154369.g.a.h #18	ENSGT01030000234629.C.a.b #17	ENSGT00950000183086.a.a.b.h.b.d #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.a.a #22	ENSGT00900000141083.c.a.a ##24	ENSGT00940000163467.a.b.b.a.b.e.b	ENSGT00950000182903.a.a.d.e	ENSGT00940000159223.d.a	ENSGT00940000157384.a.d	ENSGT00940000161729.m.a.b.a.a	ENSGT00390000011725.d.z	ENSGT00940000153655.A.b	ENSGT00990000209702	ENSGT00390000011127.d.d	ENSGT00390000016906.a	ENSGT01030000234567.B.a.b.a.b.b	ENSGT00940000174564.e	ENSGT00940000165275.A	ENSGT00940000157030.c.a.f
Oncorhynchus_a	ANCESTRAL SPECIES	22	ENSGT00940000164492.a.a.f	ENSGT00940000158959.a.a.a.b	ENSGT00940000162806.b.a.h	ENSGT00390000015368.a.a.c.g	ENSGT00940000157413.h.a	ENSGT00940000158081.o.b.d	ENSGT00940000153593.e.b.g.a	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b.a	ENSGT00940000163126.a.a.d	ENSGT00940000158995.b.b	ENSGT00940000154369.g.a.h #18	ENSGT01030000234629.C.a.b #17	ENSGT00950000183086.a.a.b.h.b.d #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.a.a #22	ENSGT00900000141083.c.a.a ##24	ENSGT00940000163467.a.b.b.a.b.e.b	ENSGT00950000182903.a.a.d.e	ENSGT00940000159223.d.a	ENSGT00940000157384.a.d	ENSGT00940000161729.m.a.b.a.a	ENSGT00390000011725.d.z	ENSGT00940000153655.A.b	ENSGT00990000209702	ENSGT00390000011127.d.d	ENSGT00390000016906.a	ENSGT01030000234567.B.a.b.a.b.b	ENSGT00940000174564.e	ENSGT00940000165275.A	ENSGT00940000157030.c.a.f
Chinook salmon	MODERN SPECIES	2888	pgpep1 (ENSOTSG00005027379)	upf1 (ENSOTSG00005027257)	HOMER3 (ENSOTSG00005027255)	uba52 (ENSOTSG00005027254)	ENSOTSG00005027252	CTXN1 (ENSOTSG00005027251)	TIMM44 (ENSOTSG00005026371)	rab11bb (ENSOTSG00005026342)	MARCHF2 (ENSOTSG00005026341)	SLC25A36 (ENSOTSG00005026340) #18	slc25a36a (ENSOTSG00005026339) #18	spsb4a (ENSOTSG00005026338) #17	ENSOTSG00005026337	clstn2a (ENSOTSG00005026336) #20	NMNAT3 (ENSOTSG00005026335) #21	rbp1.1 (ENSOTSG00005026334) #22	copb2 (ENSOTSG00005023103) ##24	ENSOTSG00005023098	dvl3a (ENSOTSG00005023093)	ap2m1a (ENSOTSG00005023092)	pcyt1aa (ENSOTSG00005023090)	SERP1 (ENSOTSG00005023089)	selenot1a (ENSOTSG00005023087)	ENSOTSG00005023086	ENSOTSG00005023083	zgc:153615 (ENSOTSG00005023081)	ENSOTSG00005023080	zp3b (ENSOTSG00005023079)	ENSOTSG00005023078	arl14 (ENSOTSG00005023077)	ppm1la (ENSOTSG00005023076)
Coho salmon	MODERN SPECIES	19	RAB3A (ENSOKIG00005050655)	jund (ENSOKIG00005050651)	pgpep1 (ENSOKIG00005050649)	upf1 (ENSOKIG00005050636)	HOMER3 (ENSOKIG00005050624)	uba52 (ENSOKIG00005050621)	ENSOKIG00005050619	CTXN1 (ENSOKIG00005050616)	rab11bb (ENSOKIG00005050607)	MARCHF2 (ENSOKIG00005050598)	slc25a36a (ENSOKIG00005050589) #18	TIMM44 (ENSOKIG00005050575)	spsb4a (ENSOKIG00005050568) #17	clstn2a (ENSOKIG00005050560) #20	NMNAT3 (ENSOKIG00005050549) #21	rbp1.1 (ENSOKIG00005050546) #22	copb2 (ENSOKIG00005050504) ##24	ENSOKIG00005050484	dvl3a (ENSOKIG00005050468)	ap2m1a (ENSOKIG00005050452)	pcyt1aa (ENSOKIG00005050446)	SERP1 (ENSOKIG00005050444)	selenot1a (ENSOKIG00005050438)	ENSOKIG00005050433	ENSOKIG00005050428	zgc:153615 (ENSOKIG00005050423)	ENSOKIG00005050411	zp3b (ENSOKIG00005050407)	ENSOKIG00005050405	arl14 (ENSOKIG00005050400)	ppm1la (ENSOKIG00005050395)
Salmo	ANCESTRAL SPECIES	5	ENSGT00940000158959.a.a.a.b	ENSGT00940000162806.b.a.h	ENSGT00390000015368.a.a.c.g	ENSGT00940000157413.h.a	ENSGT00940000158081.o.b.d	ENSGT00940000153593.e.b.g.b.a	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b.a	ENSGT00940000163126.a.a.d	ENSGT00940000158995.b.b	ENSGT00940000154369.g.a.h #18	ENSGT01030000234629.C.a.b #17	ENSGT00950000183086.a.a.b.h.b.d #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.a.b #22	ENSGT00940000159675.a.a #22	ENSGT00900000141083.c.a.a ##24	ENSGT00940000163467.a.b.b.a.b.e.b	ENSGT00950000182903.a.a.d.e	ENSGT00940000159223.d.a	ENSGT00940000157384.a.d	ENSGT00940000161729.m.a.b.a.a	ENSGT00390000011725.d.z	ENSGT00940000153655.A.b	ENSGT00990000209702	ENSGT00390000011127.d.d	ENSGT00390000016906.a	ENSGT01030000234567.B.a.b.a.b.b	ENSGT00940000174564.e	ENSGT00940000165275.A	ENSGT00940000157030.c.a.f
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000077260	ENSSSAG00000085555	jund (ENSSSAG00000077470)	upf1 (ENSSSAG00000077507)	ENSSSAG00000077729	uba52 (ENSSSAG00000077735)	ENSSSAG00000077747	ENSSSAG00000077766	rab11bb (ENSSSAG00000077887)	marh2 (ENSSSAG00000077903)	slc25a36a (ENSSSAG00000101330) #18	spsb4a (ENSSSAG00000001822) #17	clstn2a (ENSSSAG00000001846) #20	nmnat3 (ENSSSAG00000095565) #21	rbp1.1 (ENSSSAG00000002082) #22	rbp1.1 (ENSSSAG00000084760) #22	copb2 (ENSSSAG00000002265) ##24	ENSSSAG00000119258	ENSSSAG00000003034	ap2m1 (ENSSSAG00000072141)	ENSSSAG00000099258	PCY1A (ENSSSAG00000003115)	SERP1 (ENSSSAG00000003135)	selenot1a (ENSSSAG00000103633)	ENSSSAG00000003148	ENSSSAG00000003163	ENSSSAG00000111328	IL12p35b (ENSSSAG00000003180)	zp3b (ENSSSAG00000116730)	ENSSSAG00000003194	ENSSSAG00000106575
River trout	MODERN SPECIES	24	jund (ENSSTUG00000047026)	pgpep1 (ENSSTUG00000047019)	upf1 (ENSSTUG00000046629)	HOMER3 (ENSSTUG00000046586)	uba52 (ENSSTUG00000046572)	CTXN1 (ENSSTUG00000046563)	TIMM44 (ENSSTUG00000046222)	rab11bb (ENSSTUG00000046172)	MARCHF2 (ENSSTUG00000046167)	slc25a36a (ENSSTUG00000046079) #18	spsb4a (ENSSTUG00000046068) #17	ENSSTUG00000046064	clstn2a (ENSSTUG00000045666) #20	NMNAT3 (ENSSTUG00000045643) #21	rbp1.1 (ENSSTUG00000045630) #22	rbp1.1 (ENSSTUG00000045623) #22	copb2 (ENSSTUG00000045123) ##24	ENSSTUG00000045094	dvl3a (ENSSTUG00000044755)	ap2m1a (ENSSTUG00000044679)	pcyt1aa (ENSSTUG00000044654)	SERP1 (ENSSTUG00000044645)	selenot1a (ENSSTUG00000044625)	ENSSTUG00000044619	ENSSTUG00000044605	ENSSTUG00000044601	zgc:153615 (ENSSTUG00000044589)	ENSSTUG00000044576	zp3b (ENSSTUG00000044569)	ENSSTUG00000044564	arl14 (ENSSTUG00000044551)
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00940000164492.a.a.f	ENSGT00940000158959.a.a.a.b	ENSGT00940000162806.b.a.h	ENSGT00390000015368.a.a.c.g	ENSGT00940000157413.h.a	ENSGT00940000158081.o.b.d	ENSGT00940000153593.e.b.g.a	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b.a	ENSGT00940000163126.a.a.d	ENSGT00940000158995.b.b	ENSGT00940000154369.g.a.h #18	ENSGT01030000234629.C.a.b #17	ENSGT00950000183086.a.a.b.h.b.d #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.a.b #22	ENSGT00940000159675.a.a #22	ENSGT00900000141083.c.a.a ##24	ENSGT00940000163467.a.b.b.a.b.e.b	ENSGT00950000182903.a.a.d.e	ENSGT00940000159223.d.a	ENSGT00940000157384.a.d	ENSGT00940000161729.m.a.b.a.a	ENSGT00390000011725.d.z	ENSGT00940000153655.A.b	ENSGT00990000209702	ENSGT00390000011127.d.d	ENSGT00390000016906.a	ENSGT01030000234567.B.a.b.a.b.b	ENSGT00940000174564.e	ENSGT00940000165275.A
Salmo	ANCESTRAL SPECIES	5	ENSGT00940000164492.a.a.f	ENSGT00940000158959.a.a.a.b	ENSGT00940000162806.b.a.h	ENSGT00390000015368.a.a.c.g	ENSGT00940000157413.h.a	ENSGT00940000158081.o.b.d	ENSGT00940000153593.e.b.g.b.a	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b.a	ENSGT00940000163126.a.a.d	ENSGT00940000158995.b.b	ENSGT00940000154369.g.a.h #18	ENSGT01030000234629.C.a.b #17	ENSGT00950000183086.a.a.b.h.b.d #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.a.b #22	ENSGT00940000159675.a.a #22	ENSGT00900000141083.c.a.a ##24	ENSGT00940000163467.a.b.b.a.b.e.b	ENSGT00950000182903.a.a.d.e	ENSGT00940000159223.d.a	ENSGT00940000157384.a.d	ENSGT00940000161729.m.a.b.a.a	ENSGT00390000011725.d.z	ENSGT00940000153655.A.b	ENSGT00990000209702	ENSGT00390000011127.d.d	ENSGT00390000016906.a	ENSGT01030000234567.B.a.b.a.b.b	ENSGT00940000174564.e	ENSGT00940000165275.A
River trout	MODERN SPECIES	24	RAB3A (ENSSTUG00000047034)	jund (ENSSTUG00000047026)	pgpep1 (ENSSTUG00000047019)	upf1 (ENSSTUG00000046629)	HOMER3 (ENSSTUG00000046586)	uba52 (ENSSTUG00000046572)	CTXN1 (ENSSTUG00000046563)	TIMM44 (ENSSTUG00000046222)	rab11bb (ENSSTUG00000046172)	MARCHF2 (ENSSTUG00000046167)	slc25a36a (ENSSTUG00000046079) #18	spsb4a (ENSSTUG00000046068) #17	ENSSTUG00000046064	clstn2a (ENSSTUG00000045666) #20	NMNAT3 (ENSSTUG00000045643) #21	rbp1.1 (ENSSTUG00000045630) #22	rbp1.1 (ENSSTUG00000045623) #22	copb2 (ENSSTUG00000045123) ##24	ENSSTUG00000045094	dvl3a (ENSSTUG00000044755)	ap2m1a (ENSSTUG00000044679)	pcyt1aa (ENSSTUG00000044654)	SERP1 (ENSSTUG00000044645)	selenot1a (ENSSTUG00000044625)	ENSSTUG00000044619	ENSSTUG00000044605	ENSSTUG00000044601	zgc:153615 (ENSSTUG00000044589)	ENSSTUG00000044576	zp3b (ENSSTUG00000044569)	ENSSTUG00000044564
Atlantic salmon	MODERN SPECIES	22	mpv17l2 (ENSSSAG00000077227)	ENSSSAG00000077260	ENSSSAG00000085555	jund (ENSSSAG00000077470)	upf1 (ENSSSAG00000077507)	ENSSSAG00000077729	uba52 (ENSSSAG00000077735)	ENSSSAG00000077747	ENSSSAG00000077766	rab11bb (ENSSSAG00000077887)	marh2 (ENSSSAG00000077903)	slc25a36a (ENSSSAG00000101330) #18	spsb4a (ENSSSAG00000001822) #17	clstn2a (ENSSSAG00000001846) #20	nmnat3 (ENSSSAG00000095565) #21	rbp1.1 (ENSSSAG00000002082) #22	rbp1.1 (ENSSSAG00000084760) #22	copb2 (ENSSSAG00000002265) ##24	ENSSSAG00000119258	ENSSSAG00000003034	ap2m1 (ENSSSAG00000072141)	ENSSSAG00000099258	PCY1A (ENSSSAG00000003115)	SERP1 (ENSSSAG00000003135)	selenot1a (ENSSSAG00000103633)	ENSSSAG00000003148	ENSSSAG00000003163	ENSSSAG00000111328	IL12p35b (ENSSSAG00000003180)	zp3b (ENSSSAG00000116730)	ENSSSAG00000003194
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000159675.a.b #22
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	20	pgpep1 (ENSOMYG00000046787)	upf1 (ENSOMYG00000046745)	ENSOMYG00000046715	uba52 (ENSOMYG00000046709)	ENSOMYG00000059679	ENSOMYG00000046700	ENSOMYG00000046644	rab11bb (ENSOMYG00000046591)	ENSOMYG00000046583	slc25a36a (ENSOMYG00000046572) #18	ENSOMYG00000058056	spsb4a (ENSOMYG00000046561) #17	clstn2a (ENSOMYG00000046517) #20	NMNAT3 (ENSOMYG00000046471) #21	rbp1.1 (ENSOMYG00000003879) #22	rbp1.1 (ENSOMYG00000073442) #22	copb2 (ENSOMYG00000046308) ##24	ENSOMYG00000046266	dvl3a (ENSOMYG00000046247)	ENSOMYG00000046211	pcyt1aa (ENSOMYG00000046197)	SERP1 (ENSOMYG00000048273)	selenot1a (ENSOMYG00000046175)	ENSOMYG00000046167	ENSOMYG00000046154	ENSOMYG00000046134	zp3b (ENSOMYG00000046127)	ENSOMYG00000046124	ENSOMYG00000046121	ppm1la (ENSOMYG00000004863)	ENSOMYG00000069011
Rainbow trout	MODERN SPECIES	20	jund (ENSOMYG00000046794)	pgpep1 (ENSOMYG00000046787)	upf1 (ENSOMYG00000046745)	ENSOMYG00000046715	uba52 (ENSOMYG00000046709)	ENSOMYG00000059679	ENSOMYG00000046700	ENSOMYG00000046644	rab11bb (ENSOMYG00000046591)	ENSOMYG00000046583	slc25a36a (ENSOMYG00000046572) #18	ENSOMYG00000058056	spsb4a (ENSOMYG00000046561) #17	clstn2a (ENSOMYG00000046517) #20	NMNAT3 (ENSOMYG00000046471) #21	rbp1.1 (ENSOMYG00000003879) #22	rbp1.1 (ENSOMYG00000073442) #22	copb2 (ENSOMYG00000046308) ##24	ENSOMYG00000046266	dvl3a (ENSOMYG00000046247)	ENSOMYG00000046211	pcyt1aa (ENSOMYG00000046197)	SERP1 (ENSOMYG00000048273)	selenot1a (ENSOMYG00000046175)	ENSOMYG00000046167	ENSOMYG00000046154	ENSOMYG00000046134	zp3b (ENSOMYG00000046127)	ENSOMYG00000046124	ENSOMYG00000046121	ppm1la (ENSOMYG00000004863)
Huchen	MODERN SPECIES	1342														ENSHHUG00000024583	NMNAT3 (ENSHHUG00000024587) #21	rbp1.1 (ENSHHUG00000024592) #22	copb2 (ENSHHUG00000024612) ##24	ENSHHUG00000024749	ENSHHUG00000024752	dvl3a (ENSHHUG00000024769)	ap2m1a (ENSHHUG00000025138)	pcyt1aa (ENSHHUG00000025172)	SERP1 (ENSHHUG00000025297)	selenot1a (ENSHHUG00000025327)	ENSHHUG00000025329	ENSHHUG00000025339
Salmoninae	ANCESTRAL SPECIES	83	ENSGT00940000164492.a.a.e	ENSGT00940000158959.a.a.a.a	ENSGT00940000162806.b.a.g	ENSGT00390000015368.a.a.c.h	ENSGT00940000157413.h.b	ENSGT00940000158081.o.b.c	ENSGT00940000153593.e.b.g.a	ENSGT01030000234515.a.b.b.b	ENSGT00390000000051.b.b	ENSGT00940000163126.a.a.c	ENSGT00940000158995.b.a	ENSGT00940000154369.g.a.g #18	ENSGT01030000234629.C.a.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b.c #20	ENSGT00940000159675.b #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a.b ##24	ENSGT00950000182903.a.a.d.f	ENSGT00940000159223.d.b	ENSGT00940000157384.a.c	ENSGT00940000161729.m.a.a	ENSGT00940000180772	ENSGT00390000011725.d.y	ENSGT00390000011127.d.c	ENSGT00990000213680	ENSGT00940000174564.f	ENSGT00940000157030.c.a.e	ENSGT00940000155435.A.b	ENSGT00940000177269	ENSGT00940000159889.b.b.a.a.a
Huchen	MODERN SPECIES	791															ENSHHUG00000035966	rbp1.1 (ENSHHUG00000035953) #22	rbp2b (ENSHHUG00000035941) #23	copb2 (ENSHHUG00000035698) ##24	dvl3a (ENSHHUG00000035656)	AP2M1 (ENSHHUG00000035608)	pcyt1aa (ENSHHUG00000035564)	SERP1 (ENSHHUG00000035561)	selenot1a (ENSHHUG00000035549)	zgc:153615 (ENSHHUG00000035531)	ENSHHUG00000035514	ppm1la (ENSHHUG00000035505)	otol1a (ENSHHUG00000035494)	ENSHHUG00000035490	RC3H1 (ENSHHUG00000035464)	ENSHHUG00000035460	ENSHHUG00000035425
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000164492.a.a.e	ENSGT00940000158959.a.a.a.a	ENSGT00940000162806.b.a.g	ENSGT00390000015368.a.a.c.h	ENSGT00940000157413.h.b	ENSGT00940000158081.o.b.c	ENSGT00940000153593.e.b.g.b.b.a	ENSGT01030000234515.a.b.b.b	ENSGT00390000000051.b.b	ENSGT00940000163126.a.a.c	ENSGT00940000158995.b.a	ENSGT00940000154369.g.a.g #18	ENSGT01030000234629.C.a.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b.c #20	ENSGT00940000159675.b #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a.b ##24	ENSGT00950000182903.a.a.d.f	ENSGT00940000159223.d.b	ENSGT00940000157384.a.c	ENSGT00940000161729.m.a.a	ENSGT00940000180772	ENSGT00390000011725.d.y	ENSGT00390000011127.d.c	ENSGT00990000213680	ENSGT00940000174564.f	ENSGT00940000157030.c.a.e	ENSGT00940000155435.A.b	ENSGT00940000177269	ENSGT00940000159889.b.b.a.a.a
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00940000164492.a.a.e	ENSGT00940000158959.a.a.a.a	ENSGT00940000162806.b.a.g	ENSGT00390000015368.a.a.c.h	ENSGT00940000157413.h.b	ENSGT00940000158081.o.b.c	ENSGT00940000153593.f	ENSGT01030000234515.a.b.b.b	ENSGT00390000000051.b.b	ENSGT00940000163126.a.a.c	ENSGT00940000158995.b.a	ENSGT00940000154369.g.a.g #18	ENSGT01030000234629.C.a.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b.c #20	ENSGT00940000159675.b #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a.b ##24	ENSGT00950000182903.a.a.d.f	ENSGT00940000159223.d.b	ENSGT00940000157384.a.c	ENSGT00940000161729.m.a.a	ENSGT00940000180772	ENSGT00390000011725.d.y	ENSGT00390000011127.d.c	ENSGT00940000174564.f	ENSGT00940000157030.c.a.e	ENSGT00940000155435.A.b	ENSGT00940000177269	ENSGT00940000159889.b.b.a.a.a	ENSGT00940000157143.c.b.e
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000001762	ENSOMYG00000001849	jund (ENSOMYG00000001855)	pgpep1 (ENSOMYG00000001889)	upf1 (ENSOMYG00000002069)	ENSOMYG00000002121	uba52 (ENSOMYG00000002136)	ENSOMYG00000002163	ENSOMYG00000076562	ENSOMYG00000002736	rb11a (ENSOMYG00000003016)	ENSOMYG00000073077	slc25a36a (ENSOMYG00000003050) #18	spsb4a (ENSOMYG00000003071) #17	clstn2a (ENSOMYG00000003476) #20	rbp1 (ENSOMYG00000068944) #22	copb2 (ENSOMYG00000004282) ##24	ENSOMYG00000004665	ap2m1 (ENSOMYG00000004709)	pcyt1aa (ENSOMYG00000004765)	ENSOMYG00000058103	ENSOMYG00000076782	selenot1a (ENSOMYG00000004828)	zgc:153615 (ENSOMYG00000004856)	ENSOMYG00000069296	ENSOMYG00000004891	ENSOMYG00000004921	ENSOMYG00000005000	ENSOMYG00000005143	e2f5 (ENSOMYG00000005177)	ENSOMYG00000005183
Oncorhynchus_a	ANCESTRAL SPECIES	37	ENSGT00940000164492.a.a.e	ENSGT00940000158959.a.a.a.a	ENSGT00940000162806.b.a.g	ENSGT00390000015368.a.a.c.h	ENSGT00940000157413.h.b	ENSGT00940000158081.o.b.c	ENSGT00940000153593.e.b.g.b.b.a	ENSGT01030000234515.a.b.b.b	ENSGT00390000000051.b.b	ENSGT00940000163126.a.a.c	ENSGT00940000158995.b.a	ENSGT00940000154369.g.a.g #18	ENSGT01030000234629.C.a.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b.c #20	ENSGT00940000159675.b #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a.b ##24	ENSGT00950000182903.a.a.d.f	ENSGT00940000159223.d.b	ENSGT00940000157384.a.c	ENSGT00940000161729.m.a.a	ENSGT00940000180772	ENSGT00390000011725.d.y	ENSGT00390000011127.d.c	ENSGT00940000174564.f	ENSGT00940000157030.c.a.e	ENSGT00940000155435.A.b	ENSGT00940000177269	ENSGT00940000159889.b.b.a.a.a	ENSGT00940000157143.c.b.e
Coho salmon	MODERN SPECIES	23	mpv17l2 (ENSOKIG00005033005)	ENSOKIG00005033039	jund (ENSOKIG00005033465)	pgpep1 (ENSOKIG00005033478)	upf1 (ENSOKIG00005033533)	HOMER3 (ENSOKIG00005034071)	uba52 (ENSOKIG00005034082)	ENSOKIG00005034115	TIMM44 (ENSOKIG00005034165)	rab11bb (ENSOKIG00005034516)	MARCHF2 (ENSOKIG00005034573)	slc25a36a (ENSOKIG00005034598) #18	spsb4a (ENSOKIG00005034605) #17	ENSOKIG00005034614	clstn2a (ENSOKIG00005034701) #20	rbp1.1 (ENSOKIG00005035895) #22	ENSOKIG00005035958	DVL3 (ENSOKIG00005036594)	AP2M1 (ENSOKIG00005036681)	pcyt1aa (ENSOKIG00005036745)	SERP1 (ENSOKIG00005036785)	ENSOKIG00005036801	selenot1a (ENSOKIG00005036806)	zgc:153615 (ENSOKIG00005036820)	ENSOKIG00005036839	PPM1L (ENSOKIG00005036858)	otol1a (ENSOKIG00005036876)	ENSOKIG00005036901	ENSOKIG00005036921	RC3H1 (ENSOKIG00005036932)	ENSOKIG00005037019
Chinook salmon	MODERN SPECIES	1	ENSOTSG00005032068	RAB3A (ENSOTSG00005032072)	jund (ENSOTSG00005032073)	pgpep1 (ENSOTSG00005032074)	upf1 (ENSOTSG00005032079)	HOMER3 (ENSOTSG00005032705)	uba52 (ENSOTSG00005032711)	ENSOTSG00005032740	TIMM44 (ENSOTSG00005032758)	rab11bb (ENSOTSG00005034280)	MARCHF2 (ENSOTSG00005034282)	slc25a36a (ENSOTSG00005034288) #18	spsb4a (ENSOTSG00005034296) #17	zgc:136870 (ENSOTSG00005034297)	clstn2a (ENSOTSG00005034298) #20	rbp1.1 (ENSOTSG00005034697) #22	rbp2b (ENSOTSG00005034699) #23	copb2 (ENSOTSG00005034708) ##24	DVL3 (ENSOTSG00005035208)	AP2M1 (ENSOTSG00005035211)	pcyt1aa (ENSOTSG00005035227)	SERP1 (ENSOTSG00005035228)	selenot1a (ENSOTSG00005035229)	zgc:153615 (ENSOTSG00005035230)	ENSOTSG00005035231	ppm1la (ENSOTSG00005035232)	otol1a (ENSOTSG00005035233)	ENSOTSG00005035234	RC3H1 (ENSOTSG00005035236)	ENSOTSG00005035237	e2f5 (ENSOTSG00005035238)
Salmo	ANCESTRAL SPECIES	35	ENSGT00940000158959.a.a.a.a	ENSGT00940000162806.b.a.g	ENSGT00390000015368.a.a.c.h	ENSGT00940000157413.h.b	ENSGT00940000158081.o.b.c	ENSGT00940000153593.e.b.g.b.b.a	ENSGT01030000234515.a.b.b.b	ENSGT00390000000051.b.b	ENSGT00940000163126.a.a.c	ENSGT00940000158995.b.a	ENSGT00940000154369.g.a.g #18	ENSGT01030000234629.C.a.a #17	ENSGT00940000162556.D.b.a	ENSGT00950000183086.a.a.b.h.b.c #20	ENSGT00990000213390	ENSGT00940000159675.b #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a.b ##24	ENSGT00950000182903.a.a.d.f	ENSGT00940000159223.d.b	ENSGT00940000157384.a.c	ENSGT00940000161729.m.a.a	ENSGT00940000180772	ENSGT00390000011725.d.y	ENSGT00390000011127.d.c	ENSGT00990000213680	ENSGT00940000157030.c.a.e	ENSGT00940000155435.A.b	ENSGT00940000159889.b.b.a.a.a	ENSGT00940000157143.c.b.e	ENSGT00940000157414
Atlantic salmon	MODERN SPECIES	5	upf1 (ENSSSAG00000073685)	ENSSSAG00000073735	UBIQ (ENSSSAG00000073744)	ENSSSAG00000073752	ENSSSAG00000073759	rab11bb (ENSSSAG00000107231)	ENSSSAG00000073798	ENSSSAG00000086180 #18	ENSSSAG00000087588	ENSSSAG00000073809 #17	ENSSSAG00000087769	zgc:136870 (ENSSSAG00000073812)	clstn2a (ENSSSAG00000073830) #20	ENSSSAG00000111638	ENSSSAG00000074039	RET1 (ENSSSAG00000074041) #22	RBP2 (ENSSSAG00000074042) #23	copb2 (ENSSSAG00000074067) ##24	ENSSSAG00000074540	ENSSSAG00000075127	pcyt1aa (ENSSSAG00000075137)	ENSSSAG00000075155	selenot1a (ENSSSAG00000039142)	zgc:153615 (ENSSSAG00000085417)	ENSSSAG00000039248	ENSSSAG00000090809	ENSSSAG00000039453	ENSSSAG00000104922	ENSSSAG00000039607	ENSSSAG00000040265	e2f5 (ENSSSAG00000040523)
River trout	MODERN SPECIES	13	pgpep1 (ENSSTUG00000045411)	upf1 (ENSSTUG00000045435)	HOMER3 (ENSSTUG00000045507)	uba52 (ENSSTUG00000045528)	ENSSTUG00000045550	TIMM44 (ENSSTUG00000045610)	rab11bb (ENSSTUG00000046273)	MARCHF2 (ENSSTUG00000046310)	slc25a36a (ENSSTUG00000046315) #18	spsb4a (ENSSTUG00000046366) #17	ENSSTUG00000046370	zgc:136870 (ENSSTUG00000046379)	ENSSTUG00000046381	clstn2a (ENSSTUG00000046411) #20	ENSSTUG00000047323	rbp1.1 (ENSSTUG00000047325) #22	copb2 (ENSSTUG00000047339) ##24	DVL3 (ENSSTUG00000025749)	AP2M1 (ENSSTUG00000025794)	pcyt1aa (ENSSTUG00000025829)	SERP1 (ENSSTUG00000025883)	ENSSTUG00000025900	selenot1a (ENSSTUG00000025910)	zgc:153615 (ENSSTUG00000025922)	ppm1la (ENSSTUG00000025944)	otol1a (ENSSTUG00000025973)	ENSSTUG00000025987	RC3H1 (ENSSTUG00000025995)	ENSSTUG00000026031	e2f5 (ENSSTUG00000026526)	ACKR4 (ENSSTUG00000026536)
Northern pike	MODERN SPECIES	2	RAB3A (ENSELUG00000032538)	jund (ENSELUG00000020828)	pgpep1 (ENSELUG00000020843)	upf1 (ENSELUG00000020917)	HOMER3 (ENSELUG00000020980)	uba52 (ENSELUG00000027664)	CERS4 (ENSELUG00000020996)	CTXN1 (ENSELUG00000000927)	TIMM44 (ENSELUG00000021107)	rab11bb (ENSELUG00000021148)	MARCHF2 (ENSELUG00000000931)	slc25a36a (ENSELUG00000021181) #18	spsb4a (ENSELUG00000021197) #17	clstn2a (ENSELUG00000021303) #20	NMNAT3 (ENSELUG00000021366) #21	rbp1.1 (ENSELUG00000021393) #22	rbp2b (ENSELUG00000021410) #23	copb2 (ENSELUG00000021442) ##24	dvl3a (ENSELUG00000021493)	ap2m1a (ENSELUG00000021515)	pcyt1aa (ENSELUG00000021543)	zgc:92744 (ENSELUG00000021578)	selenot1a (ENSELUG00000021595)	ENSELUG00000021606	zgc:153615 (ENSELUG00000021618)	ENSELUG00000021639	zp3b (ENSELUG00000021647)	ENSELUG00000021657	ppm1la (ENSELUG00000021679)	ENSELUG00000021689	otol1a (ENSELUG00000021696)
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES	38	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c.c	ENSGT00390000004600.b.a	ENSGT00940000165265.g.a	ENSGT00980000200268	ENSGT01060000253400	ENSGT01030000235105	ENSGT00940000156948.i.b	ENSGT00940000154369.g.a #18	ENSGT00940000162556.D.b.a	ENSGT00940000154369.h #18	ENSGT01030000234629.C.d #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.c #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24
Otophysi	ANCESTRAL SPECIES	3	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c.c	ENSGT00390000004600.b.a	ENSGT00940000165265.g.a	ENSGT00990000209937	ENSGT01060000253400	ENSGT01030000235105	ENSGT00940000156948.i.b	ENSGT00940000154369.g.a #18	ENSGT00940000162556.D.b.a	ENSGT00940000154369.h #18	ENSGT01030000234629.C.d #17	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.c #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00940000160062.a	ENSGT00980000198654	ENSGT00940000157990.a.a	ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.e.b	ENSGT00940000163496.a.i.a	ENSGT00940000159567.a.a	ENSGT00940000157841	ENSGT00940000162200.a.b	ENSGT00390000001141	ENSGT00940000158278.e.b	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT00940000165806
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT00950000183071.a.a.b.c.c	ENSGT00390000004600.b.a	ENSGT00940000165265.g.a	ENSGT00990000209937	ENSGT00990000208442	ENSGT00940000173713	ENSGT01060000253400	ENSGT01030000235105	ENSGT00940000156948.i.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.d #17	ENSGT00940000162556.D.b.a	ENSGT00950000183116.b.a.a.a.b	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.c.a #22	ENSGT00940000159675.c.b #22	ENSGT00940000159675.d #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182774.b.b.b.a.b.a	ENSGT00940000160062.a	ENSGT00980000198654	ENSGT00940000157990.a.a	ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.e.b	ENSGT00940000163496.a.i.b.a	ENSGT00940000159567.a.a	ENSGT00940000157841	ENSGT00940000162200.a.b	ENSGT00390000001141	ENSGT00940000158278.e.b
Cyprininae	ANCESTRAL SPECIES	72	ENSGT00940000165265.g.a.c	ENSGT00990000209937.a.b	ENSGT00990000209937.a.a	ENSGT00990000209992.B	ENSGT00990000208442.a.a	ENSGT00940000173713.g	ENSGT01030000235105.a	ENSGT00940000156948.i.b.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.d.b #17	ENSGT00940000162556.D.b.a.a	ENSGT00950000183116.b.a.a.a.b.c.b	ENSGT00950000183116.b.a.a.a.b.c.a.b	ENSGT00950000183086.a.a.b.h.b.b #20	ENSGT00950000183179.b.b.f.b #21	ENSGT00940000159675.c.a #22	ENSGT00940000159675.d.b #22	ENSGT00940000160165.b.b #23	ENSGT00900000141083.c.a.f ##24	ENSGT00950000182774.b.b.b.a.b.a	ENSGT00940000160062.a.a	ENSGT00980000198654.a	ENSGT00940000157990.a.a.b	ENSGT00940000163496.a.i.b.a.b.a	ENSGT00940000159567.a.a.e.b
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	84	ENSGT00940000165265.g.a.c	ENSGT00990000209937.a.b	ENSGT00990000209937.a.a	ENSGT00990000209992.B	ENSGT00990000208442.a.a	ENSGT00940000173713.h.b.a	ENSGT01030000235105.b.a	ENSGT00940000156948.i.b.a	ENSGT00940000154369.g.a.d #18	ENSGT01030000234629.C.d.a #17	ENSGT00940000162556.D.b.a.b	ENSGT00950000183116.b.a.a.a.b.d	ENSGT00950000183116.b.a.a.a.b.c.a.a	ENSGT00950000183086.a.a.b.h.b.a #20	ENSGT00950000183179.b.b.f.a #21	ENSGT00940000159675.c.a.a #22	ENSGT00940000159675.d.a #22	ENSGT00940000160165.b.a #23	ENSGT00900000141083.c.a.e ##24	ENSGT00940000160062.a.b	ENSGT00940000159286.a.a	ENSGT00940000157990.a.a.a	ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.e.b	ENSGT00940000163496.a.i.b.a.a.a	ENSGT00940000159567.a.a.f	ENSGT00940000157841.c	ENSGT00940000157841.d	ENSGT00940000162200.a.b	ENSGT00390000001141.e	ENSGT00940000158278.e.b.h	ENSGT00950000182838.B.a.b.i
Golden-line barbel	MODERN SPECIES	49			epha4b (ENSSGRG00000005765)	ENSSGRG00000005766	ENSSGRG00000005767	ENSSGRG00000005768	ENSSGRG00000005769	epha4a (ENSSGRG00000005777)	SLC25A36 (ENSSGRG00000005873) #18	spsb4a (ENSSGRG00000005875) #17	ENSSGRG00000005879	ENSSGRG00000005980	ENSSGRG00000005982	clstn2a (ENSSGRG00000006002) #20	NMNAT3 (ENSSGRG00000006155) #21	RBP1 (ENSSGRG00000006159) #22	rbp1.2 (ENSSGRG00000006162) #22	rbp2b (ENSSGRG00000006166) #23	copb2 (ENSSGRG00000006200) ##24	ENSSGRG00000007680	rem2 (ENSSGRG00000007681)	carmil3 (ENSSGRG00000007688)	ehf (ENSSGRG00000007691)	ric8a (ENSSGRG00000007694)	ENSSGRG00000007761	cox8b (ENSSGRG00000007765)	zgc:110339 (ENSSGRG00000007778)	ppp6r3 (ENSSGRG00000007782)	lrp5 (ENSSGRG00000007819)	lrp5 (ENSSGRG00000007824)	ENSSGRG00000007842
Common carp reference	MODERN SPECIES	21	ENSCCRG00000024391	ENSCCRG00000024388	ENSCCRG00000024385	ENSCCRG00000026063	ENSCCRG00000026069	si:ch211-122l24.6 (ENSCCRG00000082253)	ENSCCRG00000026157	epha4a (ENSCCRG00000078510)	slc25a36a (ENSCCRG00000053985) #18	spsb4a (ENSCCRG00000019229) #17	zgc:136870 (ENSCCRG00000019176)	ENSCCRG00000056006	ENSCCRG00000019168	clstn2a (ENSCCRG00000066034) #20	NMNAT3 (ENSCCRG00000012872) #21	RBP1 (ENSCCRG00000055369) #22	rbp1.1 (ENSCCRG00000012885) #22	rbp1.2 (ENSCCRG00000012862) #22	copb2 (ENSCCRG00000080500) ##24	si:ch211-119o8.6 (ENSCCRG00000052949)	rem2 (ENSCCRG00000000217)	ENSCCRG00000000209	carmil3 (ENSCCRG00000000152)	ENSCCRG00000072148	ENSCCRG00000081403	ENSCCRG00000003989	ENSCCRG00000056212	prmt5 (ENSCCRG00000012565)	ENSCCRG00000015023	ap1g2 (ENSCCRG00000014800)	ENSCCRG00000052544
Cyprininae_a	ANCESTRAL SPECIES	149	ENSGT00940000173713.g	ENSGT01030000235105.b.b	ENSGT00990000209992.A	ENSGT00990000208442.a.b	ENSGT00940000173713.h.a	ENSGT01060000253400	ENSGT01030000235105.a	ENSGT00940000156948.i.b.b	ENSGT00940000154369.g.a.c #18	ENSGT01030000234629.C.d.b #17	ENSGT00940000162556.D.b.a.a	ENSGT00950000183116.b.a.a.a.b.c.b	ENSGT00950000183116.b.a.a.a.b.c.a.b	ENSGT00950000183086.a.a.b.h.b.b #20	ENSGT00950000183179.b.b.f.b #21	ENSGT00940000159675.c.a.b #22	ENSGT00940000159675.c.b #22	ENSGT00940000159675.d.b #22	ENSGT00940000160165.b.b #23	ENSGT00900000141083.c.a.f ##24	ENSGT00950000182774.b.b.b.a.b.a	ENSGT00940000160062.a.a	ENSGT00980000198654.a	ENSGT00940000157990.a.a.b	ENSGT00940000163496.a.i.b.a.b.a	ENSGT00940000163496.a.i.b.a.a.b	ENSGT00940000159567.a.a.e.b
Common carp reference	MODERN SPECIES	29	ENSCCRG00000082671	ENSCCRG00000077253	ENSCCRG00000035312	epha4a (ENSCCRG00000081582)	slc25a36a (ENSCCRG00000060891) #18	spsb4a (ENSCCRG00000044649) #17	zgc:136870 (ENSCCRG00000059635)	ENSCCRG00000077349	ENSCCRG00000074438	ENSCCRG00000010953	ENSCCRG00000010951	clstn2a (ENSCCRG00000032694) #20	ENSCCRG00000044641	ENSCCRG00000044638	NMNAT3 (ENSCCRG00000012853) #21	RBP1 (ENSCCRG00000012851) #22	rbp1.2 (ENSCCRG00000012849) #22	rbp2b (ENSCCRG00000006096) #23	copb2 (ENSCCRG00000006200) ##24	rem2 (ENSCCRG00000006109)	ENSCCRG00000006103	carmil3 (ENSCCRG00000048262)	ENSCCRG00000002330	ENSCCRG00000079385	ENSCCRG00000078333	ENSCCRG00000076939	psmb5 (ENSCCRG00000014783)	ENSCCRG00000061664	prmt5 (ENSCCRG00000070829)	ENSCCRG00000033654	ap1g2 (ENSCCRG00000052573)
Golden-line barbel	MODERN SPECIES	1165															NMNAT3 (ENSSGRG00000023574) #21	RBP1 (ENSSGRG00000023575) #22	rbp2b (ENSSGRG00000023576) #23	rbp1.2 (ENSSGRG00000023579) #22	copb2 (ENSSGRG00000023590) ##24	ENSSGRG00000024894	rem2 (ENSSGRG00000024896)	carmil3 (ENSSGRG00000024905)	ENSSGRG00000025036	ENSSGRG00000025037
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	11	SLCO5A1 (ENSCARG00000000674)	gtpbp4 (ENSCARG00000000562)	ENSCARG00000000532	apom (ENSCARG00000000529)	tmem71 (ENSCARG00000000524)	cavin4a (ENSCARG00000000519)	slc39a6 (ENSCARG00000000503)	CYP7B1 (ENSCARG00000000489)	trim55a (ENSCARG00000000475)	ENSCARG00000000465	adhfe1 (ENSCARG00000000446)	VCPIP1 (ENSCARG00000000430)	ENSCARG00000000320	clstn2a (ENSCARG00000007626) #20	ENSCARG00000007616 #21	RBP1 (ENSCARG00000007604) #22	rbp1.2 (ENSCARG00000007590) #22	rbp2b (ENSCARG00000007586) #23	copb2 (ENSCARG00000007476) ##24	rem2 (ENSCARG00000007420)	carmil3 (ENSCARG00000007368)	rem2 (ENSCARG00000007349)	copb2 (ENSCARG00000006255) ##24	rbp2b (ENSCARG00000006140) #23	rbp1.2 (ENSCARG00000006129) #22	RBP1 (ENSCARG00000006111) #22	ENSCARG00000006101 #21	ENSCARG00000006086	clstn2a (ENSCARG00000005654) #20	ENSCARG00000005628	zgc:136870 (ENSCARG00000005626)
Goldfish	MODERN SPECIES	11	ENSCARG00000003087	ENSCARG00000003094	ENSCARG00000003103	ENSCARG00000003113	ENSCARG00000003134	ENSCARG00000003155	ENSCARG00000003165	epha4a (ENSCARG00000003291)	slc25a36a (ENSCARG00000005538) #18	spsb4a (ENSCARG00000005624) #17	zgc:136870 (ENSCARG00000005626)	ENSCARG00000005628	clstn2a (ENSCARG00000005654) #20	ENSCARG00000006086	ENSCARG00000006101 #21	RBP1 (ENSCARG00000006111) #22	rbp1.2 (ENSCARG00000006129) #22	rbp2b (ENSCARG00000006140) #23	copb2 (ENSCARG00000006255) ##24	rem2 (ENSCARG00000007349)	carmil3 (ENSCARG00000007368)	rem2 (ENSCARG00000007420)	copb2 (ENSCARG00000007476) ##24	rbp2b (ENSCARG00000007586) #23	rbp1.2 (ENSCARG00000007590) #22	RBP1 (ENSCARG00000007604) #22	ENSCARG00000007616 #21	clstn2a (ENSCARG00000007626) #20	ENSCARG00000000320	VCPIP1 (ENSCARG00000000430)	adhfe1 (ENSCARG00000000446)
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT00390000004600.b.a	ENSGT00940000165265.g.a	ENSGT00990000209937	ENSGT00990000208442	ENSGT00940000173713	ENSGT01060000253400	ENSGT01030000235105	ENSGT00940000156948.i.b	ENSGT00940000154369.g.a #18	ENSGT01030000234629.C.d #17	ENSGT00940000162556.D.b.a	ENSGT00950000183116.b.a.a.a.b	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.c.a #22	ENSGT00940000159675.c.b #22	ENSGT00940000159675.d #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT00950000182774.b.b.b.a.b.a	ENSGT00940000160062.a	ENSGT00980000198654	ENSGT00940000157990.a.a	ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.e.b	ENSGT00940000163496.a.i.b.a	ENSGT00940000159567.a.a	ENSGT00940000157841	ENSGT00940000162200.a.b	ENSGT00390000001141	ENSGT00940000158278.e.b	ENSGT00940000155856.bb
Zebrafish	MODERN SPECIES	11	otomp (ENSDARG00000040306)	hs6st1a (ENSDARG00000054754)	uggt1 (ENSDARG00000054746)	epha4b (ENSDARG00000011600)	ccl34a.4 (ENSDARG00000090873)	ccl34a.3 (ENSDARG00000094983)	si:ch211-122l24.6 (ENSDARG00000112759)	ENSDARG00000112125	epha4a (ENSDARG00000054454)	slc25a36a (ENSDARG00000038731) #18	zgc:136870 (ENSDARG00000054837)	spsb4a (ENSDARG00000016084) #17	ENSDARG00000095040	clstn2a (ENSDARG00000060637) #20	NMNAT3 (ENSDARG00000077034) #21	rbp1.1 (ENSDARG00000018077) #22	rbp1.2 (ENSDARG00000038742) #22	rbp2b (ENSDARG00000093774) #23	copb2 (ENSDARG00000038743) ##24	si:ch211-119o8.6 (ENSDARG00000026972)	rem2 (ENSDARG00000074064)	ENSDARG00000075562	carmil3 (ENSDARG00000086990)	ENSDARG00000111637	CDH24 (ENSDARG00000077996)	psmb5 (ENSDARG00000075445)	psmb11a (ENSDARG00000108530)	prmt5 (ENSDARG00000079605)	ENSDARG00000054343	nedd8l (ENSDARG00000103472)	ap1g2 (ENSDARG00000054337)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000159675.c.b #22
Cyprininae_a	ANCESTRAL SPECIES	149	ENSGT01030000235105.b.b	ENSGT00990000209992.A	ENSGT00990000208442.a.b	ENSGT00940000173713.h.a	ENSGT01060000253400	ENSGT01030000235105.a	ENSGT00940000156948.i.b.b	ENSGT00940000154369.g.a.c #18	ENSGT01030000234629.C.d.b #17	ENSGT00940000162556.D.b.a.a	ENSGT00950000183116.b.a.a.a.b.c.b	ENSGT00950000183116.b.a.a.a.b.c.a.b	ENSGT00950000183086.a.a.b.h.b.b #20	ENSGT00950000183179.b.b.f.b #21	ENSGT00940000159675.c.a.b #22	ENSGT00940000159675.c.b #22	ENSGT00940000159675.d.b #22	ENSGT00940000160165.b.b #23	ENSGT00900000141083.c.a.f ##24	ENSGT00950000182774.b.b.b.a.b.a	ENSGT00940000160062.a.a	ENSGT00980000198654.a	ENSGT00940000157990.a.a.b	ENSGT00940000163496.a.i.b.a.b.a	ENSGT00940000163496.a.i.b.a.a.b	ENSGT00940000159567.a.a.e.b
Common carp reference	MODERN SPECIES	21	ENSCCRG00000024388	ENSCCRG00000024385	ENSCCRG00000026063	ENSCCRG00000026069	si:ch211-122l24.6 (ENSCCRG00000082253)	ENSCCRG00000026157	epha4a (ENSCCRG00000078510)	slc25a36a (ENSCCRG00000053985) #18	spsb4a (ENSCCRG00000019229) #17	zgc:136870 (ENSCCRG00000019176)	ENSCCRG00000056006	ENSCCRG00000019168	clstn2a (ENSCCRG00000066034) #20	NMNAT3 (ENSCCRG00000012872) #21	RBP1 (ENSCCRG00000055369) #22	rbp1.1 (ENSCCRG00000012885) #22	rbp1.2 (ENSCCRG00000012862) #22	copb2 (ENSCCRG00000080500) ##24	si:ch211-119o8.6 (ENSCCRG00000052949)	rem2 (ENSCCRG00000000217)	ENSCCRG00000000209	carmil3 (ENSCCRG00000000152)	ENSCCRG00000072148	ENSCCRG00000081403	ENSCCRG00000003989	ENSCCRG00000056212	prmt5 (ENSCCRG00000012565)	ENSCCRG00000015023	ap1g2 (ENSCCRG00000014800)	ENSCCRG00000052544	zp3f.2 (ENSCCRG00000052540)
Characiphysae	ANCESTRAL SPECIES	35	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c.c	ENSGT00390000004600.b.a	ENSGT00940000165265.g.a	ENSGT00990000209937	ENSGT00990000208442	ENSGT00940000173713	ENSGT01030000235105	ENSGT00940000156948.i.b	ENSGT00940000154369.g.a #18	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.d #17	ENSGT00950000183116.b.a.a.a.b	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.c #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT01030000234576.D.a.a.a	ENSGT00940000160062.a	ENSGT00940000157990.a.a	ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.e.b	ENSGT00940000163496.a.i.a	ENSGT00940000159567.a.a	ENSGT00940000157841	ENSGT00940000162200.a.b	ENSGT00390000001141	ENSGT00940000158278.e.b	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d
Characiphysae_b	ANCESTRAL SPECIES	33	ENSGT00950000183071.a.a.b.c.c	ENSGT00390000004600.b.a	ENSGT00940000165265.g.a	ENSGT00990000209937	ENSGT00990000208442	ENSGT00940000173713	ENSGT01030000235105	ENSGT00940000156948.i.b	ENSGT00940000154369.g.a #18	ENSGT00940000162556.D.b.a	ENSGT00940000154369.g.b.d #18	ENSGT01030000234629.C.d #17	ENSGT00950000183116.b.a.a.a.b	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.c #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT01030000234576.D.a.a.a	ENSGT00940000160062.a	ENSGT00940000157990.a.a	ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.e.b	ENSGT00940000163496.a.i.a	ENSGT00940000159567.a.a	ENSGT00940000163520.A.a.a.a.b.a	ENSGT00940000157841	ENSGT00940000162200.a.b	ENSGT00390000001141	ENSGT00940000158278.e.b	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb
Characoidei	ANCESTRAL SPECIES	20	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c.c	ENSGT00390000004600.b.a	ENSGT00940000165265.g.a	ENSGT00990000209937	ENSGT00990000208442	ENSGT00940000173713	ENSGT01030000235105	ENSGT00940000156948.i.b	ENSGT00940000154369.g.a #18	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.d #17	ENSGT00950000183116.b.a.a.a.b	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.c #22	ENSGT00940000160165.b #23	ENSGT00900000141083.c.a ##24	ENSGT01030000234576.D.a.a.a	ENSGT00940000160062.a	ENSGT00940000157990.a.a	ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.e.b	ENSGT00940000163520.A.a.a.a.b.a	ENSGT00940000157841	ENSGT00940000162200.a.b	ENSGT00390000001141	ENSGT00940000158278.e.b	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT01030000234567.A.b.d	ENSGT01030000234567.A.b.c.g
Red-bellied piranha	MODERN SPECIES	502													ENSPNAG00000024976	clstn2a (ENSPNAG00000007070) #20	NMNAT3 (ENSPNAG00000025110) #21	rbp1.1 (ENSPNAG00000025159) #22	rbp2b (ENSPNAG00000003882) #23	copb2 (ENSPNAG00000025316) ##24	ENSPNAG00000006821	ENSPNAG00000025570	rem2 (ENSPNAG00000025615)
Mexicana tetra	MODERN SPECIES	7	ENSAMXG00000034383	tmub1 (ENSAMXG00000037356)	epha4b (ENSAMXG00000016842)	ENSAMXG00000036237	ENSAMXG00000042025	ENSAMXG00000038570	ENSAMXG00000036590	ENSAMXG00000030404	epha4a (ENSAMXG00000006290)	ENSAMXG00000041103	slc25a36a (ENSAMXG00000006179) #18	zgc:136870 (ENSAMXG00000031894)	spsb4a (ENSAMXG00000033897) #17	clstn2a (ENSAMXG00000006013) #20	NMNAT3 (ENSAMXG00000029880) #21	rbp1.1 (ENSAMXG00000036023) #22	rbp2b (ENSAMXG00000038423) #23	copb2 (ENSAMXG00000005818) ##24	ENSAMXG00000031441	rem2 (ENSAMXG00000005708)	carmil3 (ENSAMXG00000005612)	ENSAMXG00000043196	ENSAMXG00000021206	CDH24 (ENSAMXG00000042071)	ENSAMXG00000029585	PSMB11 (ENSAMXG00000042921)	psmb5 (ENSAMXG00000033908)	prmt5 (ENSAMXG00000021165)	ENSAMXG00000035658	ap1g2 (ENSAMXG00000021108)	nedd8l (ENSAMXG00000031135)
Clupeiformes	ANCESTRAL SPECIES	283							ENSGT01030000234629.C.d #17	ENSGT00940000154369.g.a #18	ENSGT00940000156948.i.b	ENSGT01030000235105	ENSGT00940000173713	ENSGT00980000200268	ENSGT00940000165265.g.a	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675.c #22	ENSGT00900000141083.c.a ##24	ENSGT00940000162075.a.b	ENSGT00940000156342.c	ENSGT00940000161398.f.d	ENSGT00940000161398.f.c	ENSGT00950000183115.a.a.b	ENSGT00950000183136.b.b	ENSGT01040000240444.A.b.a.a	ENSGT00940000156108	ENSGT00730000114072
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	14	otomp (ENSDCDG00000032724)	ENSDCDG00000032723	ENSDCDG00000032722	hs6st1a (ENSDCDG00000032718)	uggt1 (ENSDCDG00000032456)	epha4b (ENSDCDG00000032143)	ENSDCDG00000032102	ENSDCDG00000032099	ENSDCDG00000032096	epha4a (ENSDCDG00000031988)	ENSDCDG00000031974	slc25a36a (ENSDCDG00000031968) #18	spsb4a (ENSDCDG00000031962) #17	clstn2a (ENSDCDG00000030858) #20	NMNAT3 (ENSDCDG00000030776) #21	rbp1.1 (ENSDCDG00000030771) #22	copb2 (ENSDCDG00000030458) ##24	foxl2b (ENSDCDG00000030447)	per2 (ENSDCDG00000030438)	hes6 (ENSDCDG00000030425)	itm2cb (ENSDCDG00000030421)	lpar5a (ENSDCDG00000030419)	GPR55 (ENSDCDG00000030418)	gigyf2 (ENSDCDG00000030413)	ENSDCDG00000030408	ENSDCDG00000030406	ENSDCDG00000030405	ENSDCDG00000030403	crygn1 (ENSDCDG00000030401)	ACVR2B (ENSDCDG00000029001)	ENSDCDG00000028958
Denticle herring	MODERN SPECIES	90															NMNAT3 (ENSDCDG00000008544) #21	rbp1.1 (ENSDCDG00000008554) #22	copb2 (ENSDCDG00000008622) ##24	foxl2b (ENSDCDG00000009968)
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000159675.d #22
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000159675.d #22
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT00950000182838.B.a.b	ENSGT00940000155856.bb	ENSGT00940000158278.e.b	ENSGT00390000001141	ENSGT00940000162200.a.b	ENSGT00940000157841	ENSGT00940000159567.a.a	ENSGT00940000163496.a.i.b.a	ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.e.b	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a	ENSGT00950000182774.b.b.b.a.b.a	ENSGT00900000141083.c.a ##24	ENSGT00940000160165.b #23	ENSGT00940000159675.d #22	ENSGT00940000159675.c.b #22	ENSGT00940000159675.c.a #22	ENSGT00950000183179.b.b #21	ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183116.b.a.a.a.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.d #17	ENSGT00940000154369.g.a #18	ENSGT00940000156948.i.b	ENSGT01030000235105	ENSGT01060000253400	ENSGT00940000173713	ENSGT00990000208442	ENSGT00990000209937	ENSGT00940000165265.g.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	71	ENSGT00940000165806.k.b	ENSGT00950000182838.B.a.b.i	ENSGT00940000158278.e.b.h	ENSGT00390000001141.e	ENSGT00940000162200.a.b	ENSGT00940000157841.d	ENSGT00940000157841.c	ENSGT00940000159567.a.a.f	ENSGT00940000163496.a.i.b.a.a	ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.e.b	ENSGT00940000157990.a.a.a	ENSGT00980000198654.b	ENSGT00940000160062.a.b	ENSGT00900000141083.c.a.e ##24	ENSGT00940000160165.b.a #23	ENSGT00940000159675.d.a #22	ENSGT00950000183179.b.b.f.a #21	ENSGT00950000183086.a.a.b.h.b.a #20	ENSGT00950000183116.b.a.a.a.b.d	ENSGT00940000162556.D.b.a.b	ENSGT01030000234629.C.d.a #17	ENSGT00940000154369.h #18	ENSGT00940000156948.i.b.a	ENSGT01030000235105.b.a	ENSGT00940000173713.h.b.a
Goldfish	MODERN SPECIES	19	zp3f.2 (ENSCARG00000018891)	ENSCARG00000018866	ap1g2 (ENSCARG00000018622)	ENSCARG00000018337	prmt5 (ENSCARG00000017490)	psmb5 (ENSCARG00000017408)	ENSCARG00000017348	ENSCARG00000017333	ENSCARG00000017326	carmil3 (ENSCARG00000017196)	ENSCARG00000017177	rem2 (ENSCARG00000017167)	ENSCARG00000017160	copb2 (ENSCARG00000016644) ##24	rbp2b (ENSCARG00000016595) #23	rbp1.2 (ENSCARG00000016577) #22	ENSCARG00000016567 #21	ENSCARG00000016560 #21	clstn2a (ENSCARG00000016008) #20	ENSCARG00000015975	zgc:136870 (ENSCARG00000015971)	spsb4a (ENSCARG00000015966) #17	slc25a36a (ENSCARG00000015937) #18	ENSCARG00000015929	epha4a (ENSCARG00000015854)	ENSCARG00000015846	ESYT2 (ENSCARG00000015558)	LACTB2 (ENSCARG00000015529)	SLCO5A1 (ENSCARG00000015522)	gtpbp4 (ENSCARG00000015309)
Cyprininae_a	ANCESTRAL SPECIES	84	ENSGT00940000165806.k.b	ENSGT00950000182838.B.a.b.i	ENSGT00940000158278.e.b.h	ENSGT00390000001141.e	ENSGT00940000162200.a.b	ENSGT00940000157841.d	ENSGT00940000157841.c	ENSGT00940000159567.a.a.f	ENSGT00940000163496.a.i.b.a.a.a	ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.e.b	ENSGT00940000157990.a.a.a	ENSGT00940000159286.a.a	ENSGT00940000160062.a.b	ENSGT00900000141083.c.a.e ##24	ENSGT00940000160165.b.a #23	ENSGT00940000159675.d.a #22	ENSGT00940000159675.c.a.a #22	ENSGT00950000183179.b.b.f.a #21	ENSGT00950000183086.a.a.b.h.b.a #20	ENSGT00950000183116.b.a.a.a.b.c.a.a	ENSGT00950000183116.b.a.a.a.b.d	ENSGT00940000162556.D.b.a.b	ENSGT01030000234629.C.d.a #17	ENSGT00940000154369.g.a.d #18	ENSGT00940000156948.i.b.a	ENSGT01030000235105.b.a	ENSGT00940000173713.h.b.a	ENSGT00990000208442.a.a	ENSGT00990000209992.B	ENSGT00990000209937.a.a	ENSGT00990000209937.a.b
Golden-line barbel	MODERN SPECIES	49	AP3S2 (ENSSGRG00000007847)	ENSSGRG00000007842	lrp5 (ENSSGRG00000007824)	lrp5 (ENSSGRG00000007819)	ppp6r3 (ENSSGRG00000007782)	zgc:110339 (ENSSGRG00000007778)	cox8b (ENSSGRG00000007765)	ENSSGRG00000007761	ric8a (ENSSGRG00000007694)	ehf (ENSSGRG00000007691)	carmil3 (ENSSGRG00000007688)	rem2 (ENSSGRG00000007681)	ENSSGRG00000007680	copb2 (ENSSGRG00000006200) ##24	rbp2b (ENSSGRG00000006166) #23	rbp1.2 (ENSSGRG00000006162) #22	RBP1 (ENSSGRG00000006159) #22	NMNAT3 (ENSSGRG00000006155) #21	clstn2a (ENSSGRG00000006002) #20	ENSSGRG00000005982	ENSSGRG00000005980	ENSSGRG00000005879	spsb4a (ENSSGRG00000005875) #17	SLC25A36 (ENSSGRG00000005873) #18	epha4a (ENSSGRG00000005777)	ENSSGRG00000005769	ENSSGRG00000005768	ENSSGRG00000005767	ENSSGRG00000005766	epha4b (ENSSGRG00000005765)
Common carp reference	MODERN SPECIES	29	nedd8l (ENSCCRG00000053783)	ap1g2 (ENSCCRG00000052573)	ENSCCRG00000033654	prmt5 (ENSCCRG00000070829)	ENSCCRG00000061664	psmb5 (ENSCCRG00000014783)	ENSCCRG00000076939	ENSCCRG00000078333	ENSCCRG00000079385	ENSCCRG00000002330	carmil3 (ENSCCRG00000048262)	ENSCCRG00000006103	rem2 (ENSCCRG00000006109)	copb2 (ENSCCRG00000006200) ##24	rbp2b (ENSCCRG00000006096) #23	rbp1.2 (ENSCCRG00000012849) #22	RBP1 (ENSCCRG00000012851) #22	NMNAT3 (ENSCCRG00000012853) #21	ENSCCRG00000044638	ENSCCRG00000044641	clstn2a (ENSCCRG00000032694) #20	ENSCCRG00000010951	ENSCCRG00000010953	ENSCCRG00000074438	ENSCCRG00000077349	zgc:136870 (ENSCCRG00000059635)	spsb4a (ENSCCRG00000044649) #17	slc25a36a (ENSCCRG00000060891) #18	epha4a (ENSCCRG00000081582)	ENSCCRG00000035312	ENSCCRG00000077253
Cyprininae	ANCESTRAL SPECIES	72								ENSGT00940000159567.a.a.e.b	ENSGT00940000163496.a.i.b.a.b.a	ENSGT00940000157990.a.a.b	ENSGT00980000198654.a	ENSGT00940000160062.a.a	ENSGT00950000182774.b.b.b.a.b.a	ENSGT00900000141083.c.a.f ##24	ENSGT00940000160165.b.b #23	ENSGT00940000159675.d.b #22	ENSGT00940000159675.c.a #22	ENSGT00950000183179.b.b.f.b #21	ENSGT00950000183086.a.a.b.h.b.b #20	ENSGT00950000183116.b.a.a.a.b.c.a.b	ENSGT00950000183116.b.a.a.a.b.c.b	ENSGT00940000162556.D.b.a.a	ENSGT01030000234629.C.d.b #17	ENSGT00940000154369.g.a #18	ENSGT00940000156948.i.b.b	ENSGT01030000235105.a	ENSGT00940000173713.g	ENSGT00990000208442.a.a	ENSGT00990000209992.B	ENSGT00990000209937.a.a	ENSGT00990000209937.a.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	11	spsb4a (ENSCARG00000005624) #17	zgc:136870 (ENSCARG00000005626)	ENSCARG00000005628	clstn2a (ENSCARG00000005654) #20	ENSCARG00000006086	ENSCARG00000006101 #21	RBP1 (ENSCARG00000006111) #22	rbp1.2 (ENSCARG00000006129) #22	rbp2b (ENSCARG00000006140) #23	copb2 (ENSCARG00000006255) ##24	rem2 (ENSCARG00000007349)	carmil3 (ENSCARG00000007368)	rem2 (ENSCARG00000007420)	copb2 (ENSCARG00000007476) ##24	rbp2b (ENSCARG00000007586) #23	rbp1.2 (ENSCARG00000007590) #22	RBP1 (ENSCARG00000007604) #22	ENSCARG00000007616 #21	clstn2a (ENSCARG00000007626) #20	ENSCARG00000000320	VCPIP1 (ENSCARG00000000430)	adhfe1 (ENSCARG00000000446)	ENSCARG00000000465	trim55a (ENSCARG00000000475)	CYP7B1 (ENSCARG00000000489)	slc39a6 (ENSCARG00000000503)	cavin4a (ENSCARG00000000519)	tmem71 (ENSCARG00000000524)	apom (ENSCARG00000000529)	ENSCARG00000000532	gtpbp4 (ENSCARG00000000562)
Goldfish	MODERN SPECIES	11	ENSCARG00000000465	adhfe1 (ENSCARG00000000446)	VCPIP1 (ENSCARG00000000430)	ENSCARG00000000320	clstn2a (ENSCARG00000007626) #20	ENSCARG00000007616 #21	RBP1 (ENSCARG00000007604) #22	rbp1.2 (ENSCARG00000007590) #22	rbp2b (ENSCARG00000007586) #23	copb2 (ENSCARG00000007476) ##24	rem2 (ENSCARG00000007420)	carmil3 (ENSCARG00000007368)	rem2 (ENSCARG00000007349)	copb2 (ENSCARG00000006255) ##24	rbp2b (ENSCARG00000006140) #23	rbp1.2 (ENSCARG00000006129) #22	RBP1 (ENSCARG00000006111) #22	ENSCARG00000006101 #21	ENSCARG00000006086	clstn2a (ENSCARG00000005654) #20	ENSCARG00000005628	zgc:136870 (ENSCARG00000005626)	spsb4a (ENSCARG00000005624) #17	slc25a36a (ENSCARG00000005538) #18	epha4a (ENSCARG00000003291)	ENSCARG00000003165	ENSCARG00000003155	ENSCARG00000003134	ENSCARG00000003113	ENSCARG00000003103	ENSCARG00000003094
Cyprininae_a	ANCESTRAL SPECIES	149							ENSGT00940000159567.a.a.e.b	ENSGT00940000163496.a.i.b.a.a.b	ENSGT00940000163496.a.i.b.a.b.a	ENSGT00940000157990.a.a.b	ENSGT00980000198654.a	ENSGT00940000160062.a.a	ENSGT00950000182774.b.b.b.a.b.a	ENSGT00900000141083.c.a.f ##24	ENSGT00940000160165.b.b #23	ENSGT00940000159675.d.b #22	ENSGT00940000159675.c.b #22	ENSGT00940000159675.c.a.b #22	ENSGT00950000183179.b.b.f.b #21	ENSGT00950000183086.a.a.b.h.b.b #20	ENSGT00950000183116.b.a.a.a.b.c.a.b	ENSGT00950000183116.b.a.a.a.b.c.b	ENSGT00940000162556.D.b.a.a	ENSGT01030000234629.C.d.b #17	ENSGT00940000154369.g.a.c #18	ENSGT00940000156948.i.b.b	ENSGT01030000235105.a	ENSGT01060000253400	ENSGT00940000173713.h.a	ENSGT00990000208442.a.b	ENSGT00990000209992.A
Golden-line barbel	MODERN SPECIES	1165										ENSSGRG00000025037	ENSSGRG00000025036	carmil3 (ENSSGRG00000024905)	rem2 (ENSSGRG00000024896)	ENSSGRG00000024894	copb2 (ENSSGRG00000023590) ##24	rbp1.2 (ENSSGRG00000023579) #22	rbp2b (ENSSGRG00000023576) #23	RBP1 (ENSSGRG00000023575) #22	NMNAT3 (ENSSGRG00000023574) #21
Common carp reference	MODERN SPECIES	21	zp3f.1 (ENSCCRG00000052531)	zp3f.2 (ENSCCRG00000052540)	ENSCCRG00000052544	ap1g2 (ENSCCRG00000014800)	ENSCCRG00000015023	prmt5 (ENSCCRG00000012565)	ENSCCRG00000056212	ENSCCRG00000003989	ENSCCRG00000081403	ENSCCRG00000072148	carmil3 (ENSCCRG00000000152)	ENSCCRG00000000209	rem2 (ENSCCRG00000000217)	si:ch211-119o8.6 (ENSCCRG00000052949)	copb2 (ENSCCRG00000080500) ##24	rbp1.2 (ENSCCRG00000012862) #22	rbp1.1 (ENSCCRG00000012885) #22	RBP1 (ENSCCRG00000055369) #22	NMNAT3 (ENSCCRG00000012872) #21	clstn2a (ENSCCRG00000066034) #20	ENSCCRG00000019168	ENSCCRG00000056006	zgc:136870 (ENSCCRG00000019176)	spsb4a (ENSCCRG00000019229) #17	slc25a36a (ENSCCRG00000053985) #18	epha4a (ENSCCRG00000078510)	ENSCCRG00000026157	si:ch211-122l24.6 (ENSCCRG00000082253)	ENSCCRG00000026069	ENSCCRG00000026063	ENSCCRG00000024385
Zebrafish	MODERN SPECIES	11	zp3f.2 (ENSDARG00000054313)	ap1g2 (ENSDARG00000054337)	nedd8l (ENSDARG00000103472)	ENSDARG00000054343	prmt5 (ENSDARG00000079605)	psmb11a (ENSDARG00000108530)	psmb5 (ENSDARG00000075445)	CDH24 (ENSDARG00000077996)	ENSDARG00000111637	carmil3 (ENSDARG00000086990)	ENSDARG00000075562	rem2 (ENSDARG00000074064)	si:ch211-119o8.6 (ENSDARG00000026972)	copb2 (ENSDARG00000038743) ##24	rbp2b (ENSDARG00000093774) #23	rbp1.2 (ENSDARG00000038742) #22	rbp1.1 (ENSDARG00000018077) #22	NMNAT3 (ENSDARG00000077034) #21	clstn2a (ENSDARG00000060637) #20	ENSDARG00000095040	spsb4a (ENSDARG00000016084) #17	zgc:136870 (ENSDARG00000054837)	slc25a36a (ENSDARG00000038731) #18	epha4a (ENSDARG00000054454)	ENSDARG00000112125	si:ch211-122l24.6 (ENSDARG00000112759)	ccl34a.3 (ENSDARG00000094983)	ccl34a.4 (ENSDARG00000090873)	epha4b (ENSDARG00000011600)	uggt1 (ENSDARG00000054746)	hs6st1a (ENSDARG00000054754)
Osteoglossiformes	ANCESTRAL SPECIES	291														ENSGT00950000183086.a.a.b.h.b #20	ENSGT00950000183179.b.b #21	ENSGT00940000159675 #22	ENSGT00940000160165.b #23	ENSGT00390000006095 #25	ENSGT00940000162075	ENSGT00940000156342.c	ENSGT00940000161398.e	ENSGT00950000183136.b.b	ENSGT01050000244955.b.c.f	ENSGT01050000244897.a.a.b.a	ENSGT00940000155297.hb.a.b	ENSGT00940000156850.a.b	ENSGT00980000199383	ENSGT00530000063489.a	ENSGT00940000155954.a.k	ENSGT00390000010895.c	ENSGT00970000193372.b.a.a
Asian bonytongue	MODERN SPECIES	18	FHIP1A (ENSSFOG00015008540)	ENSSFOG00015008509	RPS3A (ENSSFOG00015008477)	mab21l2 (ENSSFOG00015026793)	ENSSFOG00015008282	ENSSFOG00015008200	klhl6 (ENSSFOG00015024715)	PAK2 (ENSSFOG00015031867)	d2hgdh (ENSSFOG00015007236)	otomp (ENSSFOG00015007320)	acvr1l (ENSSFOG00015007275)	HS6ST1 (ENSSFOG00015007332)	uggt1 (ENSSFOG00015007345)	ENSSFOG00015007540	ENSSFOG00015007553	rbp1.2 (ENSSFOG00015007639) #22	farsb (ENSSFOG00015007850)	mrps22 (ENSSFOG00015007902) #25	rbp2b (ENSSFOG00015026328) #23	ENSSFOG00015007929	pnn (ENSSFOG00015007936)	zc3h14 (ENSSFOG00015007976)	ENSSFOG00015025912	tmed10 (ENSSFOG00015008009)	fosab (ENSSFOG00015008047)	ENSSFOG00015030123	JDP2 (ENSSFOG00015008065)	BATF (ENSSFOG00015024533)	FLVCR2 (ENSSFOG00015025229)	TGFB3 (ENSSFOG00015030385)	ENSSFOG00015026333
P. kingsleyae	MODERN SPECIES	17	ENSPKIG00000005096	MAST2 (ENSPKIG00000005126)	ENSPKIG00000005212	TSPAN1 (ENSPKIG00000005313)	FZR1 (ENSPKIG00000005411)	ENSPKIG00000005541	ENSPKIG00000005597	mgst3a (ENSPKIG00000005612)	ENSPKIG00000005636	coa7 (ENSPKIG00000005652)	RALGPS2 (ENSPKIG00000005683)	ANGPTL1 (ENSPKIG00000005804)	TADA1 (ENSPKIG00000005850)	clstn2a (ENSPKIG00000005961) #20	NMNAT3 (ENSPKIG00000006051) #21	rbp1.2 (ENSPKIG00000006075) #22	rbp2b (ENSPKIG00000006121) #23	mrps22 (ENSPKIG00000006156) #25	foxl2a (ENSPKIG00000006191)	per2 (ENSPKIG00000006248)	her13 (ENSPKIG00000006326)	itm2ca (ENSPKIG00000006355)	lpar5a (ENSPKIG00000006375)	ENSPKIG00000006389	ENSPKIG00000006409	ENSPKIG00000006424	ENSPKIG00000006438	GPC1 (ENSPKIG00000006462)	ENSPKIG00000006501	ENSPKIG00000006533	ENSPKIG00000006557
Spotted gar	MODERN SPECIES	652	dhrs12la (ENSLOCG00000004049)	ap1s3a (ENSLOCG00000004062)	scg2b (ENSLOCG00000004078)	acsl3b (ENSLOCG00000004093)	MOGAT1 (ENSLOCG00000004115)	farsb (ENSLOCG00000004136)	SGPP2 (ENSLOCG00000004157)	ENSLOCG00000017388	pax3b (ENSLOCG00000004189)	epha4a (ENSLOCG00000004201)	pxylp1 (ENSLOCG00000004225) #16	slc25a36a (ENSLOCG00000004239) #18	ENSLOCG00000004257 ##17	ENSLOCG00000004271 #19	clstn2a (ENSLOCG00000004289) #20	rbp1.1 (ENSLOCG00000004318) #22	rbp2a (ENSLOCG00000004353) #23	copb2 (ENSLOCG00000004368) #24	mrps22 (ENSLOCG00000004403) #25	foxl2b (ENSLOCG00000017389)	PIK3CB (ENSLOCG00000004421)	per2 (ENSLOCG00000004441)	hes6 (ENSLOCG00000004463)	her8.2 (ENSLOCG00000004481)	CAB39 (ENSLOCG00000004495)	itm2ca (ENSLOCG00000004510)	lpar5a (ENSLOCG00000004527)	lpar5b (ENSLOCG00000017390)	ENSLOCG00000017391	gpr55a (ENSLOCG00000017392)	GPR55 (ENSLOCG00000004542)