Murinae	ANCESTRAL SPECIES	15	ENSGT00980000198839	ENSGT00940000158043	ENSGT00940000155938 #8	ENSGT00390000018123.a.a #9	ENSGT00940000160934 #10	ENSGT00530000063759.a #11	ENSGT00440000033589.c #12	ENSGT00950000183170.a #13	ENSGT00940000159096 #14	ENSGT00940000158301 #15	ENSGT00390000012529 #16	ENSGT00390000008576 #17	ENSGT00940000158492 #18	ENSGT00390000014556 #19	ENSGT00940000159811 #20	ENSGT00940000158682 #22	ENSGT00940000154837.f.y.b #23	ENSGT00530000063553.b.b #24	ENSGT00940000159578 #25	ENSGT00950000183118.B #26	ENSGT00390000013367 #27	ENSGT00940000156041 #28	ENSGT00940000154688.b #29	ENSGT00940000159061 #30	ENSGT00390000009505 #31	ENSGT00940000160007 #34	ENSGT00390000007370 #35	ENSGT00390000007315 #36	ENSGT00940000164424 #37	ENSGT00950000182755.b.a.a.a.a.a.b.d.b	ENSGT01030000234638.b.a.a
Rat	MODERN SPECIES	10	ENSRNOG00000069574 #7	Sall1 (ENSRNOG00000013907) #8	Cyld (ENSRNOG00000014048) #9	Nod2 (ENSRNOG00000014124) #10	Snx20 (ENSRNOG00000014202) #11	Nkd1 (ENSRNOG00000014293) #12	Brd7 (ENSRNOG00000014419) #13	Adcy7 (ENSRNOG00000014776) #14	Tent4b (ENSRNOG00000024212) #15	Heatr3 (ENSRNOG00000015459) #16	Cnep1r1 (ENSRNOG00000015534) #17	Zfp423 (ENSRNOG00000014658) #18	LOC680913 (ENSRNOG00000024182) #19	Cbln1 (ENSRNOG00000000010) #20	Rps15a-ps3 (ENSRNOG00000055046) #21	N4bp1 (ENSRNOG00000015121) #22	Siah1 (ENSRNOG00000015143) #23	Lonp2 (ENSRNOG00000015162) #24	Abcc12 (ENSRNOG00000015666) #25	Phkb (ENSRNOG00000024101) #26	Itfg1 (ENSRNOG00000015843) #27	Neto2 (ENSRNOG00000016245) #28	Dnaja2 (ENSRNOG00000016251) #29	Gpt2 (ENSRNOG00000059579) #30	RGD1308706 (ENSRNOG00000017090) #31	ENSRNOG00000070220 #32	AC131806.3 (ENSRNOG00000058218) #33	Mylk3 (ENSRNOG00000017546) #34	Orc6 (ENSRNOG00000024043) #35	Vps35 (ENSRNOG00000017612) #36	Or7c19 (ENSRNOG00000017868) #37
Mus	ANCESTRAL SPECIES	6	ENSGT00980000198839	ENSGT00940000158043	ENSGT00940000155938 #8	ENSGT00390000018123.a.a #9	ENSGT00940000160934 #10	ENSGT00530000063759.a #11	ENSGT00440000033589.c #12	ENSGT00950000183170.a #13	ENSGT00940000159096 #14	ENSGT00940000158301 #15	ENSGT00390000012529 #16	ENSGT00390000008576 #17	ENSGT00940000158492 #18	ENSGT00390000014556 #19	ENSGT00940000159811 #20	ENSGT00940000158682 #22	ENSGT00940000154837.f.y.b #23	ENSGT00530000063553.b.b #24	ENSGT00940000159578 #25	ENSGT00950000183118.B #26	ENSGT00390000013367 #27	ENSGT00940000156041 #28	ENSGT00940000154688.b #29	ENSGT00940000159061 #30	ENSGT00390000009505 #31	ENSGT00940000160007 #34	ENSGT00390000007370 #35	ENSGT00390000007315 #36	ENSGT00940000164424 #37	ENSGT00950000182755.b.a.a.a.a.a.b.d.b	ENSGT01030000234638.b.a.a
Mus_A	ANCESTRAL SPECIES	8	ENSGT00980000198839	ENSGT00940000158043	ENSGT00940000155938 #8	ENSGT00390000018123.a.a #9	ENSGT00940000160934 #10	ENSGT00530000063759.a #11	ENSGT00440000033589.c #12	ENSGT00950000183170.a #13	ENSGT00940000159096 #14	ENSGT00940000158301 #15	ENSGT00390000012529 #16	ENSGT00390000008576 #17	ENSGT00940000158492 #18	ENSGT00390000014556 #19	ENSGT00940000159811 #20	ENSGT00940000158682 #22	ENSGT00940000154837.f.y.b #23	ENSGT00860000136300	ENSGT00940000154837.f.y.a ##23	ENSGT00530000063553.b.b #24	ENSGT00940000159578 #25	ENSGT00950000183118.B #26	ENSGT00390000013367 #27	ENSGT00940000156041 #28	ENSGT00940000154688.b #29	ENSGT00940000159061 #30	ENSGT00390000009505 #31	ENSGT00940000160007 #34	ENSGT00390000007370 #35	ENSGT00390000007315 #36	ENSGT00940000164424 #37
Mus_B	ANCESTRAL SPECIES	6	ENSGT00980000198839	ENSGT00940000158043	ENSGT00940000155938 #8	ENSGT00390000018123.a.a #9	ENSGT00940000160934 #10	ENSGT00530000063759.a #11	ENSGT00440000033589.c #12	ENSGT00950000183170.a #13	ENSGT00940000159096 #14	ENSGT00940000158301 #15	ENSGT00390000012529 #16	ENSGT00390000008576 #17	ENSGT00940000158492 #18	ENSGT00390000014556 #19	ENSGT00940000159811 #20	ENSGT00940000158682 #22	ENSGT00940000154837.f.y.b #23	ENSGT00860000136300	ENSGT00940000154837.f.y.a ##23	ENSGT00530000063553.b.b #24	ENSGT00940000159578 #25	ENSGT00950000183118.B #26	ENSGT00390000013367 #27	ENSGT00940000156041 #28	ENSGT00940000154688.b #29	ENSGT00940000159061 #30	ENSGT00390000009505 #31	ENSGT00940000160007 #34	ENSGT00390000007370 #35	ENSGT00390000007315 #36	ENSGT00940000164424 #37
Mouse	MODERN SPECIES	17	Gm19935 (ENSMUSG00000110332)	Tox3 (ENSMUSG00000043668)	Sall1 (ENSMUSG00000031665) #8	Cyld (ENSMUSG00000036712) #9	Nod2 (ENSMUSG00000055994) #10	Snx20 (ENSMUSG00000031662) #11	Nkd1 (ENSMUSG00000031661) #12	Brd7 (ENSMUSG00000031660) #13	Adcy7 (ENSMUSG00000031659) #14	Tent4b (ENSMUSG00000036779) #15	Heatr3 (ENSMUSG00000031657) #16	Cnep1r1 (ENSMUSG00000036810) #17	Zfp423 (ENSMUSG00000045333) #18	4933402J07Rik (ENSMUSG00000069971) #19	Cbln1 (ENSMUSG00000031654) #20	N4bp1 (ENSMUSG00000031652) #22	Siah1a (ENSMUSG00000036840) #23	Lonp2 (ENSMUSG00000047866) #24	Abcc12 (ENSMUSG00000036872) #25	Phkb (ENSMUSG00000036879) #26	Itfg1 (ENSMUSG00000031703) #27	Neto2 (ENSMUSG00000036902) #28	Dnaja2 (ENSMUSG00000031701) #29	Gpt2 (ENSMUSG00000031700) #30	4921524J17Rik (ENSMUSG00000036934) #31	Mylk3 (ENSMUSG00000031698) #34	Orc6 (ENSMUSG00000031697) #35	Vps35 (ENSMUSG00000031696) #36	Or7c19 (ENSMUSG00000051952) #37	Cks1brt (ENSMUSG00000062687)	Zfp791 (ENSMUSG00000074194)
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000155706	ENSGT00940000158043	ENSGT00940000155938 #8	ENSGT00390000018123.a.a #9	ENSGT00940000160934 #10	ENSGT00530000063759.a #11	ENSGT00440000033589.c #12	ENSGT00950000183170.a #13	ENSGT00940000159096 #14	ENSGT00940000158301 #15	ENSGT00390000012529 #16	ENSGT00390000008576 #17	ENSGT00940000158492 #18	ENSGT00390000014556 #19	ENSGT00940000159811 #20	ENSGT00940000158682 #22	ENSGT00940000154837.f.y.b #23	ENSGT00860000136300	ENSGT00940000154837.f.y.a ##23	ENSGT00530000063553.b.b #24	ENSGT00940000159578 #25	ENSGT00950000183118.B #26	ENSGT00390000013367 #27	ENSGT00940000156041 #28	ENSGT00940000154688.b #29	ENSGT00940000159061 #30	ENSGT00390000009505 #31	ENSGT00940000160007 #34	ENSGT00390000007370 #35	ENSGT00390000007315 #36	ENSGT00940000164424 #37
Steppe mouse	MODERN SPECIES	3149								Tent4b (ENSMSIG00000015046) #15	Heatr3 (ENSMSIG00000014972) #16	Cnep1r1 (ENSMSIG00000014910) #17	Zfp423 (ENSMSIG00000014783) #18	ENSMSIG00000014762	4933402J07Rik (ENSMSIG00000014743) #19	Cbln1 (ENSMSIG00000014701) #20	ENSMSIG00000014694	N4bp1 (ENSMSIG00000014641) #22	ENSMSIG00000014629 #23	Lonp2 (ENSMSIG00000014552) #24	Abcc12 (ENSMSIG00000014487) #25	ENSMSIG00000014471	Phkb (ENSMSIG00000014316) #26	ENSMSIG00000014284 #27
spretus	MODERN SPECIES	17	Tox3 (MGP_SPRETEiJ_G0032482)	MGP_SPRETEiJ_G0032481	Sall1 (MGP_SPRETEiJ_G0032480) #8	Cyld (MGP_SPRETEiJ_G0032479) #9	Nod2 (MGP_SPRETEiJ_G0032478) #10	Snx20 (MGP_SPRETEiJ_G0032477) #11	Nkd1 (MGP_SPRETEiJ_G0032476) #12	Brd7 (MGP_SPRETEiJ_G0032475) #13	Adcy7 (MGP_SPRETEiJ_G0032474) #14	Tent4b (MGP_SPRETEiJ_G0032473) #15	Heatr3 (MGP_SPRETEiJ_G0032472) #16	Cnep1r1 (MGP_SPRETEiJ_G0032471) #17	Zfp423 (MGP_SPRETEiJ_G0032470) #18	4933402J07Rik (MGP_SPRETEiJ_G0032469) #19	Cbln1 (MGP_SPRETEiJ_G0032468) #20	N4bp1 (MGP_SPRETEiJ_G0032467) #22	MGP_SPRETEiJ_G0032466	MGP_SPRETEiJ_G0032465 ##23	Lonp2 (MGP_SPRETEiJ_G0032464) #24	Abcc12 (MGP_SPRETEiJ_G0032463) #25	Phkb (MGP_SPRETEiJ_G0032462) #26	Itfg1 (MGP_SPRETEiJ_G0032461) #27	Neto2 (MGP_SPRETEiJ_G0032460) #28	MGP_SPRETEiJ_G0032459	Dnaja2 (MGP_SPRETEiJ_G0032458) #29	Gpt2 (MGP_SPRETEiJ_G0032457) #30	Mylk3 (MGP_SPRETEiJ_G0032456) #34	Orc6 (MGP_SPRETEiJ_G0032455) #35	Vps35 (MGP_SPRETEiJ_G0032454) #36	Or7c19 (MGP_SPRETEiJ_G0032453) #37	Zfp791 (MGP_SPRETEiJ_G0032452)
Ryukyu mouse	MODERN SPECIES	17	Chd9 (MGP_CAROLIEiJ_G0031364)	Tox3 (MGP_CAROLIEiJ_G0031363)	Sall1 (MGP_CAROLIEiJ_G0031362) #8	Cyld (MGP_CAROLIEiJ_G0031361) #9	Nod2 (MGP_CAROLIEiJ_G0031360) #10	Snx20 (MGP_CAROLIEiJ_G0031359) #11	Nkd1 (MGP_CAROLIEiJ_G0031358) #12	Brd7 (MGP_CAROLIEiJ_G0031357) #13	Adcy7 (MGP_CAROLIEiJ_G0031356) #14	Tent4b (MGP_CAROLIEiJ_G0031355) #15	Heatr3 (MGP_CAROLIEiJ_G0031354) #16	Cnep1r1 (MGP_CAROLIEiJ_G0031353) #17	Zfp423 (MGP_CAROLIEiJ_G0031352) #18	4933402J07Rik (MGP_CAROLIEiJ_G0031351) #19	Cbln1 (MGP_CAROLIEiJ_G0031350) #20	N4bp1 (MGP_CAROLIEiJ_G0031349) #22	MGP_CAROLIEiJ_G0031348	MGP_CAROLIEiJ_G0031347 ##23	MGP_CAROLIEiJ_G0031346 ##23	Lonp2 (MGP_CAROLIEiJ_G0031345) #24	Abcc12 (MGP_CAROLIEiJ_G0031344) #25	Phkb (MGP_CAROLIEiJ_G0031343) #26	Itfg1 (MGP_CAROLIEiJ_G0031342) #27	Neto2 (MGP_CAROLIEiJ_G0031341) #28	Dnaja2 (MGP_CAROLIEiJ_G0031340) #29	Gpt2 (MGP_CAROLIEiJ_G0031339) #30	4921524J17Rik (MGP_CAROLIEiJ_G0031338) #31	Mylk3 (MGP_CAROLIEiJ_G0031337) #34	Orc6 (MGP_CAROLIEiJ_G0031336) #35	Vps35 (MGP_CAROLIEiJ_G0031335) #36	Or7c19 (MGP_CAROLIEiJ_G0031334) #37
Shrew mouse	MODERN SPECIES	12	Rbl2 (MGP_PahariEiJ_G0022965)	Chd9 (MGP_PahariEiJ_G0022964)	MGP_PahariEiJ_G0022963	Tox3 (MGP_PahariEiJ_G0022962)	Sall1 (MGP_PahariEiJ_G0022961) #8	Cyld (MGP_PahariEiJ_G0022960) #9	Nod2 (MGP_PahariEiJ_G0022959) #10	Snx20 (MGP_PahariEiJ_G0022958) #11	Nkd1 (MGP_PahariEiJ_G0022957) #12	Brd7 (MGP_PahariEiJ_G0022956) #13	Adcy7 (MGP_PahariEiJ_G0022955) #14	Tent4b (MGP_PahariEiJ_G0022954) #15	Zfp423 (MGP_PahariEiJ_G0022953) #18	4933402J07Rik (MGP_PahariEiJ_G0022952) #19	Cbln1 (MGP_PahariEiJ_G0022951) #20	N4bp1 (MGP_PahariEiJ_G0022950) #22	Siah1a (MGP_PahariEiJ_G0022949) #23	Lonp2 (MGP_PahariEiJ_G0022948) #24	Abcc12 (MGP_PahariEiJ_G0022947) #25	Phkb (MGP_PahariEiJ_G0022946) #26	MGP_PahariEiJ_G0022945 #28	MGP_PahariEiJ_G0022944	Dnaja2 (MGP_PahariEiJ_G0022943) #29	Gpt2 (MGP_PahariEiJ_G0022942) #30	Mylk3 (MGP_PahariEiJ_G0022941) #34	Orc6 (MGP_PahariEiJ_G0022940) #35	Vps35 (MGP_PahariEiJ_G0022939) #36	Or7c19 (MGP_PahariEiJ_G0022938) #37	Zfp791 (MGP_PahariEiJ_G0022937)	Man2b1 (MGP_PahariEiJ_G0022936)	Wdr83 (MGP_PahariEiJ_G0022935)