Sarcopterygii	ANCESTRAL SPECIES	381														ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00940000165402
Tetrapoda	ANCESTRAL SPECIES	9	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00940000154885.C	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00940000165402	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT01030000234629.E.b	ENSGT00390000007055 #35
Amniota	ANCESTRAL SPECIES	20	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00940000154885.C	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Mammalia	ANCESTRAL SPECIES	9	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Theria	ANCESTRAL SPECIES	8	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Glires	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000155395.e	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000155395.e	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000155395.e	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Upper Galilee mountains blind mole rat	MODERN SPECIES	1238	Ptprj (ENSNGAG00000019187) #7	Nup160 (ENSNGAG00000011564) #8	Fnbp4 (ENSNGAG00000000488) #9	Agbl2 (ENSNGAG00000000234) #10	Mtch2 (ENSNGAG00000003094) #11	C1qtnf4 (ENSNGAG00000009680) #12	Ndufs3 (ENSNGAG00000012046) #13	Kbtbd4 (ENSNGAG00000000276) #14	Ptpmt1 (ENSNGAG00000017776) #15	ENSNGAG00000018260 #16	Celf1 (ENSNGAG00000017390) #17	Rapsn (ENSNGAG00000007295) #18	Psmc3 (ENSNGAG00000017843) #19	Slc39a13 (ENSNGAG00000017536) #20	Spi1 (ENSNGAG00000010713) #21	Mybpc3 (ENSNGAG00000000260) #22	Madd (ENSNGAG00000017768) #23	Nr1h3 (ENSNGAG00000015402) #24	Acp2 (ENSNGAG00000007455) #25	Ddb2 (ENSNGAG00000017336) #26	Pacsin3 (ENSNGAG00000014205) #27	Arfgap2 (ENSNGAG00000009124) #28	Cstpp1 (ENSNGAG00000000171) #29	Lrp4 (ENSNGAG00000020436) #30	Ckap5 (ENSNGAG00000001579) #31	F2 (ENSNGAG00000010351) #32	Zfp408 (ENSNGAG00000000309) #33	Arhgap1 (ENSNGAG00000013969) #34	Atg13 (ENSNGAG00000015785) #35	ENSNGAG00000012504 #36
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000164050	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000158345.g	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000158345.g	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Golden Hamster	MODERN SPECIES	618	ENSMAUG00000008266	ENSMAUG00000006795	Ptprj (ENSMAUG00000011509) #7	Nup160 (ENSMAUG00000009877) #8	Agbl2 (ENSMAUG00000013242) #10	Mtch2 (ENSMAUG00000009619) #11	C1qtnf4 (ENSMAUG00000009128) #12	Ndufs3 (ENSMAUG00000010036) #13	Kbtbd4 (ENSMAUG00000009694) #14	Ptpmt1 (ENSMAUG00000010436) #15	Celf1 (ENSMAUG00000009468) #17	Rapsn (ENSMAUG00000008690) #18	Psmc3 (ENSMAUG00000007346) #19	ENSMAUG00000009110 #20	Spi1 (ENSMAUG00000008854) #21	Mybpc3 (ENSMAUG00000008229) #22	Madd (ENSMAUG00000009156) #23	Nr1h3 (ENSMAUG00000008657) #24	Acp2 (ENSMAUG00000007767) #25	Ddb2 (ENSMAUG00000010179) #26	Pacsin3 (ENSMAUG00000009572) #27	Arfgap2 (ENSMAUG00000009218) #28	ENSMAUG00000008870	ENSMAUG00000008742	Cstpp1 (ENSMAUG00000008635) #29	Lrp4 (ENSMAUG00000016435) #30	Ckap5 (ENSMAUG00000012944) #31	F2 (ENSMAUG00000009414) #32	Arhgap1 (ENSMAUG00000012048) #34	Atg13 (ENSMAUG00000011052) #35	Harbi1 (ENSMAUG00000012193)
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001024110	Ptprj (ENSCGRG00001023856) #7	Nup160 (ENSCGRG00001023375) #8	Fnbp4 (ENSCGRG00001022832) #9	Agbl2 (ENSCGRG00001000549) #10	Mtch2 (ENSCGRG00001024807) #11	C1qtnf4 (ENSCGRG00001007540) #12	Ndufs3 (ENSCGRG00001024136) #13	Kbtbd4 (ENSCGRG00001023919) #14	Ptpmt1 (ENSCGRG00001012152) #15	Celf1 (ENSCGRG00001011274) #17	Rapsn (ENSCGRG00001009650) #18	Psmc3 (ENSCGRG00001005657) #19	Slc39a13 (ENSCGRG00001003447) #20	Spi1 (ENSCGRG00001009684) #21	Mybpc3 (ENSCGRG00001006702) #22	Madd (ENSCGRG00001024681) #23	Nr1h3 (ENSCGRG00001022656) #24	Acp2 (ENSCGRG00001022138) #25	Ddb2 (ENSCGRG00001012939) #26	Pacsin3 (ENSCGRG00001011840) #27	Arfgap2 (ENSCGRG00001010700) #28	Cstpp1 (ENSCGRG00001020042) #29	Lrp4 (ENSCGRG00001018783) #30	Ckap5 (ENSCGRG00001013368) #31	F2 (ENSCGRG00001023426) #32	Zfp408 (ENSCGRG00001023588) #33	Arhgap1 (ENSCGRG00001023260) #34	ENSCGRG00001022859	Atg13 (ENSCGRG00001022112) #35	Harbi1 (ENSCGRG00001021313)
Cricetidae_B	ANCESTRAL SPECIES	34	ENSGT00940000158345.g	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Prairie vole	MODERN SPECIES	81	Ptprj (ENSMOCG00000020009) #7	Nup160 (ENSMOCG00000015911) #8	Fnbp4 (ENSMOCG00000016333) #9	Agbl2 (ENSMOCG00000015547) #10	Mtch2 (ENSMOCG00000001577) #11	C1qtnf4 (ENSMOCG00000013500) #12	Ndufs3 (ENSMOCG00000009375) #13	Kbtbd4 (ENSMOCG00000021780) #14	Ptpmt1 (ENSMOCG00000018913) #15	Celf1 (ENSMOCG00000012633) #17	Rapsn (ENSMOCG00000012267) #18	Psmc3 (ENSMOCG00000001464) #19	ENSMOCG00000006097 #20	ENSMOCG00000008195 #20	Spi1 (ENSMOCG00000006114) #21	Mybpc3 (ENSMOCG00000008344) #22	Madd (ENSMOCG00000003278) #23	Nr1h3 (ENSMOCG00000010671) #24	Acp2 (ENSMOCG00000002882) #25	Ddb2 (ENSMOCG00000021291) #26	Pacsin3 (ENSMOCG00000022577) #27	Arfgap2 (ENSMOCG00000016700) #28	Cstpp1 (ENSMOCG00000006672) #29	Lrp4 (ENSMOCG00000005823) #30	Ckap5 (ENSMOCG00000022214) #31	F2 (ENSMOCG00000019585) #32	Arhgap1 (ENSMOCG00000008533) #34	Atg13 (ENSMOCG00000018209) #35	ENSMOCG00000007253	Ambra1 (ENSMOCG00000018792)	Chrm4 (ENSMOCG00000016103)
Northern American deer mouse	MODERN SPECIES	17	ENSPEMG00000027548	ENSPEMG00000030020	Ptprj (ENSPEMG00000013280) #7	Nup160 (ENSPEMG00000018101) #8	Fnbp4 (ENSPEMG00000016688) #9	Agbl2 (ENSPEMG00000001437) #10	Mtch2 (ENSPEMG00000010063) #11	C1qtnf4 (ENSPEMG00000024602) #12	Ndufs3 (ENSPEMG00000007248) #13	Kbtbd4 (ENSPEMG00000001992) #14	Ptpmt1 (ENSPEMG00000030250) #15	Celf1 (ENSPEMG00000015644) #17	Rapsn (ENSPEMG00000016952) #18	Slc39a13 (ENSPEMG00000016290) #20	Spi1 (ENSPEMG00000009647) #21	Mybpc3 (ENSPEMG00000009479) #22	Madd (ENSPEMG00000001264) #23	Nr1h3 (ENSPEMG00000018824) #24	Acp2 (ENSPEMG00000011860) #25	Ddb2 (ENSPEMG00000012899) #26	Pacsin3 (ENSPEMG00000018424) #27	Arfgap2 (ENSPEMG00000009220) #28	Cstpp1 (ENSPEMG00000018931) #29	Lrp4 (ENSPEMG00000015598) #30	Ckap5 (ENSPEMG00000007231) #31	F2 (ENSPEMG00000018118) #32	Zfp408 (ENSPEMG00000016757) #33	Arhgap1 (ENSPEMG00000011370) #34	Atg13 (ENSPEMG00000017021) #35	Harbi1 (ENSPEMG00000013606)	ENSPEMG00000025318
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000158345.i	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Mus	ANCESTRAL SPECIES	1	ENSGT00940000158345.i	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Mus_A	ANCESTRAL SPECIES		ENSGT00940000158345.i	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000158345.i.a.a	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Mus_C	ANCESTRAL SPECIES		ENSGT00940000158345.i.a.a	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
spretus	MODERN SPECIES	11	MGP_SPRETEiJ_G0024850	MGP_SPRETEiJ_G0024849	Ptprj (MGP_SPRETEiJ_G0024851) #7	Nup160 (MGP_SPRETEiJ_G0024852) #8	Fnbp4 (MGP_SPRETEiJ_G0024853) #9	Agbl2 (MGP_SPRETEiJ_G0024854) #10	Mtch2 (MGP_SPRETEiJ_G0024855) #11	C1qtnf4 (MGP_SPRETEiJ_G0024856) #12	Ndufs3 (MGP_SPRETEiJ_G0024857) #13	Kbtbd4 (MGP_SPRETEiJ_G0024858) #14	Celf1 (MGP_SPRETEiJ_G0024859) #17	Rapsn (MGP_SPRETEiJ_G0024860) #18	Psmc3 (MGP_SPRETEiJ_G0024861) #19	Slc39a13 (MGP_SPRETEiJ_G0024862) #20	Spi1 (MGP_SPRETEiJ_G0024863) #21	Mybpc3 (MGP_SPRETEiJ_G0024864) #22	Madd (MGP_SPRETEiJ_G0024865) #23	Nr1h3 (MGP_SPRETEiJ_G0024866) #24	Acp2 (MGP_SPRETEiJ_G0024867) #25	Ddb2 (MGP_SPRETEiJ_G0024868) #26	Pacsin3 (MGP_SPRETEiJ_G0024869) #27	Arfgap2 (MGP_SPRETEiJ_G0024870) #28	Cstpp1 (MGP_SPRETEiJ_G0024871) #29	Lrp4 (MGP_SPRETEiJ_G0024872) #30	Ckap5 (MGP_SPRETEiJ_G0024873) #31	F2 (MGP_SPRETEiJ_G0024874) #32	Zfp408 (MGP_SPRETEiJ_G0024875) #33	Arhgap1 (MGP_SPRETEiJ_G0024876) #34	Atg13 (MGP_SPRETEiJ_G0024877) #35	Harbi1 (MGP_SPRETEiJ_G0024878)	Ambra1 (MGP_SPRETEiJ_G0024879)
Steppe mouse	MODERN SPECIES	36	Nup160 (ENSMSIG00000027860) #8	ENSMSIG00000027856	Fnbp4 (ENSMSIG00000027843) #9	Agbl2 (ENSMSIG00000027703) #10	ENSMSIG00000027642 #11	C1qtnf4 (ENSMSIG00000027637) #12	Ndufs3 (ENSMSIG00000027630) #13	Kbtbd4 (ENSMSIG00000027623) #14	ENSMSIG00000027615 #15	Celf1 (ENSMSIG00000027572) #17	ENSMSIG00000027554	Rapsn (ENSMSIG00000027530) #18	Psmc3 (ENSMSIG00000027459) #19	Slc39a13 (ENSMSIG00000027429) #20	Spi1 (ENSMSIG00000027421) #21	Mybpc3 (ENSMSIG00000027308) #22	Madd (ENSMSIG00000021063) #23	Nr1h3 (ENSMSIG00000020950) #24	Acp2 (ENSMSIG00000020936) #25	Ddb2 (ENSMSIG00000020921) #26	Pacsin3 (ENSMSIG00000020892) #27	Arfgap2 (ENSMSIG00000020760) #28	ENSMSIG00000020727 #29	ENSMSIG00000020721	Lrp4 (ENSMSIG00000020667) #30	ENSMSIG00000020658	Ckap5 (ENSMSIG00000020211) #31	F2 (ENSMSIG00000020083) #32	Zfp408 (ENSMSIG00000020068) #33	Arhgap1 (ENSMSIG00000020000) #34	Atg13 (ENSMSIG00000019915) #35
Mouse	MODERN SPECIES	11	Or4x13 (ENSMUSG00000082980)	Ptprj (ENSMUSG00000025314) #7	Nup160 (ENSMUSG00000051329) #8	Fnbp4 (ENSMUSG00000008200) #9	Agbl2 (ENSMUSG00000040812) #10	Mtch2 (ENSMUSG00000027282) #11	C1qtnf4 (ENSMUSG00000040794) #12	Ndufs3 (ENSMUSG00000005510) #13	Kbtbd4 (ENSMUSG00000005505) #14	Ptpmt1 (ENSMUSG00000063235) #15	Celf1 (ENSMUSG00000005506) #17	Rapsn (ENSMUSG00000002104) #18	Psmc3 (ENSMUSG00000002102) #19	Slc39a13 (ENSMUSG00000002105) #20	Spi1 (ENSMUSG00000002111) #21	Mybpc3 (ENSMUSG00000002100) #22	Madd (ENSMUSG00000040687) #23	Nr1h3 (ENSMUSG00000002108) #24	Acp2 (ENSMUSG00000002103) #25	Ddb2 (ENSMUSG00000002109) #26	Pacsin3 (ENSMUSG00000027257) #27	Arfgap2 (ENSMUSG00000027255) #28	Cstpp1 (ENSMUSG00000040591) #29	Lrp4 (ENSMUSG00000027253) #30	Ckap5 (ENSMUSG00000040549) #31	F2 (ENSMUSG00000027249) #32	Zfp408 (ENSMUSG00000075040) #33	Arhgap1 (ENSMUSG00000027247) #34	Atg13 (ENSMUSG00000027244) #35	Harbi1 (ENSMUSG00000027243)	Ambra1 (ENSMUSG00000040506)
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0023939	Ptprj (MGP_CAROLIEiJ_G0023940) #7	Nup160 (MGP_CAROLIEiJ_G0023941) #8	Fnbp4 (MGP_CAROLIEiJ_G0023942) #9	Agbl2 (MGP_CAROLIEiJ_G0023943) #10	Mtch2 (MGP_CAROLIEiJ_G0023944) #11	Madd (MGP_CAROLIEiJ_G0023945) #23	C1qtnf4 (MGP_CAROLIEiJ_G0023946) #12	Ndufs3 (MGP_CAROLIEiJ_G0023947) #13	Kbtbd4 (MGP_CAROLIEiJ_G0023948) #14	Celf1 (MGP_CAROLIEiJ_G0023949) #17	Rapsn (MGP_CAROLIEiJ_G0023950) #18	Psmc3 (MGP_CAROLIEiJ_G0023951) #19	Slc39a13 (MGP_CAROLIEiJ_G0023952) #20	Spi1 (MGP_CAROLIEiJ_G0023953) #21	Mybpc3 (MGP_CAROLIEiJ_G0023954) #22	Nr1h3 (MGP_CAROLIEiJ_G0023955) #24	Acp2 (MGP_CAROLIEiJ_G0023956) #25	Ddb2 (MGP_CAROLIEiJ_G0023957) #26	Pacsin3 (MGP_CAROLIEiJ_G0023958) #27	Arfgap2 (MGP_CAROLIEiJ_G0023959) #28	Cstpp1 (MGP_CAROLIEiJ_G0023960) #29	MGP_CAROLIEiJ_G0023961	Lrp4 (MGP_CAROLIEiJ_G0023962) #30	Ckap5 (MGP_CAROLIEiJ_G0023963) #31	F2 (MGP_CAROLIEiJ_G0023964) #32	Zfp408 (MGP_CAROLIEiJ_G0023965) #33	Arhgap1 (MGP_CAROLIEiJ_G0023966) #34	Atg13 (MGP_CAROLIEiJ_G0023967) #35	Harbi1 (MGP_CAROLIEiJ_G0023968)	Ambra1 (MGP_CAROLIEiJ_G0023969)
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025375	MGP_PahariEiJ_G0025376	Ptprj (MGP_PahariEiJ_G0025377) #7	Nup160 (MGP_PahariEiJ_G0025378) #8	Fnbp4 (MGP_PahariEiJ_G0025379) #9	Agbl2 (MGP_PahariEiJ_G0025380) #10	Mtch2 (MGP_PahariEiJ_G0025381) #11	C1qtnf4 (MGP_PahariEiJ_G0025382) #12	Ndufs3 (MGP_PahariEiJ_G0025383) #13	Kbtbd4 (MGP_PahariEiJ_G0025384) #14	Celf1 (MGP_PahariEiJ_G0025385) #17	Rapsn (MGP_PahariEiJ_G0025386) #18	Psmc3 (MGP_PahariEiJ_G0025387) #19	Slc39a13 (MGP_PahariEiJ_G0025388) #20	Spi1 (MGP_PahariEiJ_G0025389) #21	Mybpc3 (MGP_PahariEiJ_G0025390) #22	Madd (MGP_PahariEiJ_G0025391) #23	Nr1h3 (MGP_PahariEiJ_G0025392) #24	Acp2 (MGP_PahariEiJ_G0025393) #25	Ddb2 (MGP_PahariEiJ_G0025394) #26	Pacsin3 (MGP_PahariEiJ_G0025395) #27	Arfgap2 (MGP_PahariEiJ_G0025396) #28	Cstpp1 (MGP_PahariEiJ_G0025397) #29	MGP_PahariEiJ_G0025398	Lrp4 (MGP_PahariEiJ_G0025399) #30	Ckap5 (MGP_PahariEiJ_G0025400) #31	F2 (MGP_PahariEiJ_G0025401) #32	Zfp408 (MGP_PahariEiJ_G0025402) #33	Arhgap1 (MGP_PahariEiJ_G0025403) #34	Atg13 (MGP_PahariEiJ_G0025404) #35	Harbi1 (MGP_PahariEiJ_G0025405)
Rat	MODERN SPECIES	13	ENSRNOG00000065949	Ptprj (ENSRNOG00000034025) #7	Nup160 (ENSRNOG00000028215) #8	Fnbp4 (ENSRNOG00000007241) #9	Agbl2 (ENSRNOG00000008467) #10	Mtch2 (ENSRNOG00000058658) #11	C1qtnf4 (ENSRNOG00000069579) #12	Ndufs3 (ENSRNOG00000009155) #13	Kbtbd4 (ENSRNOG00000009397) #14	Ptpmt1 (ENSRNOG00000009723) #15	Celf1 (ENSRNOG00000010379) #17	Rapsn (ENSRNOG00000011208) #18	Psmc3 (ENSRNOG00000011414) #19	Slc39a13 (ENSRNOG00000011981) #20	Spi1 (ENSRNOG00000012172) #21	Mybpc3 (ENSRNOG00000012307) #22	Madd (ENSRNOG00000012568) #23	Nr1h3 (ENSRNOG00000013172) #24	Acp2 (ENSRNOG00000013594) #25	Ddb2 (ENSRNOG00000014071) #26	Pacsin3 (ENSRNOG00000014204) #27	Arfgap2 (ENSRNOG00000014429) #28	Cstpp1 (ENSRNOG00000014798) #29	Lrp4 (ENSRNOG00000015285) #30	Ckap5 (ENSRNOG00000016067) #31	F2 (ENSRNOG00000016325) #32	ENSRNOG00000070459 #33	Arhgap1 (ENSRNOG00000016610) #34	Atg13 (ENSRNOG00000016984) #35	Ambra1 (ENSRNOG00000017422)	Chrm4 (ENSRNOG00000017556)
Lesser Egyptian jerboa	MODERN SPECIES	62			Ptprj (ENSJJAG00000012062) #7	Nup160 (ENSJJAG00000020091) #8	Fnbp4 (ENSJJAG00000009203) #9	Agbl2 (ENSJJAG00000022894) #10	Mtch2 (ENSJJAG00000011880) #11	C1qtnf4 (ENSJJAG00000023278) #12	Ndufs3 (ENSJJAG00000023557) #13	Kbtbd4 (ENSJJAG00000020543) #14	Celf1 (ENSJJAG00000020280) #17	Rapsn (ENSJJAG00000020297) #18	Psmc3 (ENSJJAG00000021354) #19	Slc39a13 (ENSJJAG00000007370) #20	Spi1 (ENSJJAG00000019221) #21	Mybpc3 (ENSJJAG00000018706) #22	Madd (ENSJJAG00000015606) #23	Nr1h3 (ENSJJAG00000020697) #24	Acp2 (ENSJJAG00000019515) #25	Ddb2 (ENSJJAG00000016552) #26	Pacsin3 (ENSJJAG00000023252) #27	Arfgap2 (ENSJJAG00000003129) #28	Cstpp1 (ENSJJAG00000008330) #29	Lrp4 (ENSJJAG00000014851) #30	Ckap5 (ENSJJAG00000023265) #31	F2 (ENSJJAG00000005619) #32	Zfp408 (ENSJJAG00000015381) #33	Arhgap1 (ENSJJAG00000022610) #34	Atg13 (ENSJJAG00000024173) #35	ENSJJAG00000015195 #36	ENSJJAG00000016975
Kangaroo rat	MODERN SPECIES	444	Or4c3d (ENSDORG00000000936)	ENSDORG00000024502	Ptprj (ENSDORG00000008291) #7	Nup160 (ENSDORG00000004246) #8	Fnbp4 (ENSDORG00000004245) #9	Agbl2 (ENSDORG00000025903) #10	Mtch2 (ENSDORG00000001511) #11	C1qtnf4 (ENSDORG00000015597) #12	Kbtbd4 (ENSDORG00000015593) #14	Ptpmt1 (ENSDORG00000015591) #15	Celf1 (ENSDORG00000013721) #17	Rapsn (ENSDORG00000000757) #18	Psmc3 (ENSDORG00000000756) #19	Slc39a13 (ENSDORG00000000753) #20	Spi1 (ENSDORG00000007758) #21	Mybpc3 (ENSDORG00000007751) #22	Madd (ENSDORG00000007749) #23	Nr1h3 (ENSDORG00000007747) #24	Acp2 (ENSDORG00000007743) #25	Ddb2 (ENSDORG00000007741) #26	ENSDORG00000013060 #27	Arfgap2 (ENSDORG00000013057) #28	Cstpp1 (ENSDORG00000013052) #29	Lrp4 (ENSDORG00000001785) #30	Ckap5 (ENSDORG00000011373) #31	F2 (ENSDORG00000029579) #32	Zfp408 (ENSDORG00000000387) #33	Arhgap1 (ENSDORG00000000385) #34	Atg13 (ENSDORG00000000382) #35	ENSDORG00000028941	Ambra1 (ENSDORG00000008382)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000155395.e.d	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a
Naked mole-rat female	MODERN SPECIES	14	ENSHGLG00000003580	ENSHGLG00000041936	ENSHGLG00000039374	ENSHGLG00000008506 #7	ENSHGLG00000043784	MTCH2 (ENSHGLG00000017536) #11	FAM180B (ENSHGLG00000038229)	NDUFS3 (ENSHGLG00000018368) #13	KBTBD4 (ENSHGLG00000047234) #14	ENSHGLG00000037048	ENSHGLG00000006909 #17	RAPSN (ENSHGLG00000008521) #18	PSMC3 (ENSHGLG00000005713) #19	SLC39A13 (ENSHGLG00000041087) #20	ENSHGLG00000011456 #21	ENSHGLG00000044290 #22	NR1H3 (ENSHGLG00000014541) #24	ENSHGLG00000036516 #25	DDB2 (ENSHGLG00000018689) #26	ENSHGLG00000040462 #28	CSTPP1 (ENSHGLG00000018725) #29	ARHGAP1 (ENSHGLG00000017685) #34	ENSHGLG00000013428 #35	ENSHGLG00000018447	AMBRA1 (ENSHGLG00000017564)	ENSHGLG00000034290	ENSHGLG00000042531	ENSHGLG00000032476	CREB3L1 (ENSHGLG00000048284)	ENSHGLG00000033741	ENSHGLG00000037709
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000155395.e.c.b	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a
Guinea pig	MODERN SPECIES	72	ENSCPOG00000036627	PTPRJ (ENSCPOG00000000801) #7	NUP160 (ENSCPOG00000005289) #8	FNBP4 (ENSCPOG00000000320) #9	AGBL2 (ENSCPOG00000003935) #10	MTCH2 (ENSCPOG00000006293) #11	C1QTNF4 (ENSCPOG00000023948) #12	NDUFS3 (ENSCPOG00000006141) #13	KBTBD4 (ENSCPOG00000019448) #14	PTPMT1 (ENSCPOG00000031147) #15	CELF1 (ENSCPOG00000036381) #17	RAPSN (ENSCPOG00000015456) #18	PSMC3 (ENSCPOG00000008176) #19	SLC39A13 (ENSCPOG00000008169) #20	SPI1 (ENSCPOG00000022138) #21	MYBPC3 (ENSCPOG00000013368) #22	MADD (ENSCPOG00000013364) #23	NR1H3 (ENSCPOG00000013362) #24	ACP2 (ENSCPOG00000013359) #25	DDB2 (ENSCPOG00000013358) #26	PACSIN3 (ENSCPOG00000013356) #27	ARFGAP2 (ENSCPOG00000013352) #28	CSTPP1 (ENSCPOG00000020334) #29	LRP4 (ENSCPOG00000007072) #30	CKAP5 (ENSCPOG00000007054) #31	F2 (ENSCPOG00000026682) #32	ARHGAP1 (ENSCPOG00000013046) #34	ATG13 (ENSCPOG00000013042) #35	HARBI1 (ENSCPOG00000037304)	AMBRA1 (ENSCPOG00000007341)	CHRM4 (ENSCPOG00000020788)
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000158345	ENSGT00940000155395.e.c.b	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a
Long-tailed chinchilla	MODERN SPECIES	129	ENSCLAG00000012812	ENSCLAG00000013131	ENSCLAG00000012951	PTPRJ (ENSCLAG00000015568) #7	NUP160 (ENSCLAG00000015457) #8	FNBP4 (ENSCLAG00000014534) #9	MTCH2 (ENSCLAG00000012026) #11	C1QTNF4 (ENSCLAG00000015186) #12	NDUFS3 (ENSCLAG00000014873) #13	KBTBD4 (ENSCLAG00000016255) #14	CELF1 (ENSCLAG00000011791) #17	RAPSN (ENSCLAG00000015497) #18	PSMC3 (ENSCLAG00000013916) #19	SLC39A13 (ENSCLAG00000014480) #20	SPI1 (ENSCLAG00000017201) #21	MYBPC3 (ENSCLAG00000015418) #22	MADD (ENSCLAG00000012503) #23	NR1H3 (ENSCLAG00000013563) #24	ACP2 (ENSCLAG00000014608) #25	DDB2 (ENSCLAG00000016473) #26	ENSCLAG00000012709 #27	ARFGAP2 (ENSCLAG00000016467) #28	CSTPP1 (ENSCLAG00000014110) #29	LRP4 (ENSCLAG00000016159) #30	CKAP5 (ENSCLAG00000015801) #31	F2 (ENSCLAG00000015618) #32	ARHGAP1 (ENSCLAG00000013542) #34	ATG13 (ENSCLAG00000015328) #35	HARBI1 (ENSCLAG00000013578)	AMBRA1 (ENSCLAG00000015156)	CHRM4 (ENSCLAG00000013251)
Degu	MODERN SPECIES	59	ENSODEG00000016074	ENSODEG00000015266	ENSODEG00000015275	PTPRJ (ENSODEG00000016025) #7	NUP160 (ENSODEG00000015381) #8	FNBP4 (ENSODEG00000016574) #9	AGBL2 (ENSODEG00000016111) #10	MTCH2 (ENSODEG00000015416) #11	NDUFS3 (ENSODEG00000015948) #13	KBTBD4 (ENSODEG00000015830) #14	CELF1 (ENSODEG00000015204) #17	RAPSN (ENSODEG00000015194) #18	ENSODEG00000016550 #19	SLC39A13 (ENSODEG00000015895) #20	SPI1 (ENSODEG00000015369) #21	MYBPC3 (ENSODEG00000016030) #22	MADD (ENSODEG00000017645) #23	NR1H3 (ENSODEG00000016180) #24	ACP2 (ENSODEG00000015528) #25	ENSODEG00000015965 #27	ENSODEG00000016456 #28	CSTPP1 (ENSODEG00000016656) #29	LRP4 (ENSODEG00000015720) #30	CKAP5 (ENSODEG00000016409) #31	F2 (ENSODEG00000016157) #32	ARHGAP1 (ENSODEG00000016156) #34	ATG13 (ENSODEG00000017294) #35	ENSODEG00000016339	AMBRA1 (ENSODEG00000016633)	CHRM4 (ENSODEG00000020352)	MDK (ENSODEG00000015931)
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Marmotini	ANCESTRAL SPECIES	22	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b.e #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Marmotini_b	ANCESTRAL SPECIES	23	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b.e #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Arctic ground squirrel	MODERN SPECIES	208	NUP160 (ENSUPAG00010014170) #8	FNBP4 (ENSUPAG00010014131) #9	AGBL2 (ENSUPAG00010014116) #10	MTCH2 (ENSUPAG00010014096) #11	C1QTNF4 (ENSUPAG00010014090) #12	FAM180B (ENSUPAG00010014076)	NDUFS3 (ENSUPAG00010014067) #13	KBTBD4 (ENSUPAG00010014056) #14	ENSUPAG00010014045	CELF1 (ENSUPAG00010013973) #17	RAPSN (ENSUPAG00010013926) #18	PSMC3 (ENSUPAG00010013908) #19	SLC39A13 (ENSUPAG00010013855) #20	SPI1 (ENSUPAG00010013850) #21	ENSUPAG00010013841	MYBPC3 (ENSUPAG00010013812) #22	MADD (ENSUPAG00010011229) #23	NR1H3 (ENSUPAG00010011188) #24	ACP2 (ENSUPAG00010011162) #25	DDB2 (ENSUPAG00010011149) #26	PACSIN3 (ENSUPAG00010011141) #27	ARFGAP2 (ENSUPAG00010011117) #28	CSTPP1 (ENSUPAG00010011093) #29	LRP4 (ENSUPAG00010011049) #30	CKAP5 (ENSUPAG00010010730) #31	F2 (ENSUPAG00010010714) #32	ZNF408 (ENSUPAG00010010704) #33	ARHGAP1 (ENSUPAG00010010696) #34	ATG13 (ENSUPAG00010010621) #35	HARBI1 (ENSUPAG00010010611)	AMBRA1 (ENSUPAG00010010430)
Squirrel	MODERN SPECIES	162	PTPRJ (ENSSTOG00000014795) #7	NUP160 (ENSSTOG00000014125) #8	FNBP4 (ENSSTOG00000014106) #9	AGBL2 (ENSSTOG00000003491) #10	ENSSTOG00000028441 #11	C1QTNF4 (ENSSTOG00000024273) #12	FAM180B (ENSSTOG00000000628)	NDUFS3 (ENSSTOG00000000622) #13	KBTBD4 (ENSSTOG00000020864) #14	PTPMT1 (ENSSTOG00000019770) #15	CELF1 (ENSSTOG00000000613) #17	RAPSN (ENSSTOG00000011047) #18	PSMC3 (ENSSTOG00000011038) #19	SLC39A13 (ENSSTOG00000027722) #20	SPI1 (ENSSTOG00000022735) #21	MYBPC3 (ENSSTOG00000026473) #22	MADD (ENSSTOG00000007626) #23	NR1H3 (ENSSTOG00000007611) #24	ACP2 (ENSSTOG00000007586) #25	DDB2 (ENSSTOG00000007571) #26	PACSIN3 (ENSSTOG00000007547) #27	ARFGAP2 (ENSSTOG00000007524) #28	CSTPP1 (ENSSTOG00000007512) #29	LRP4 (ENSSTOG00000005236) #30	CKAP5 (ENSSTOG00000005158) #31	F2 (ENSSTOG00000005130) #32	ZNF408 (ENSSTOG00000005114) #33	ARHGAP1 (ENSSTOG00000026557) #34	ATG13 (ENSSTOG00000005077) #35	HARBI1 (ENSSTOG00000005072)	AMBRA1 (ENSSTOG00000019411)
Alpin marmot	MODERN SPECIES	3	PTPRJ (ENSMMMG00000016023) #7	NUP160 (ENSMMMG00000015948) #8	FNBP4 (ENSMMMG00000015751) #9	ENSMMMG00000015743	ENSMMMG00000015697 #10	ENSMMMG00000015683 #11	FAM180B (ENSMMMG00000015675)	NDUFS3 (ENSMMMG00000015667) #13	KBTBD4 (ENSMMMG00000015654) #14	ENSMMMG00000015652	CELF1 (ENSMMMG00000015346) #17	RAPSN (ENSMMMG00000015294) #18	PSMC3 (ENSMMMG00000015270) #19	SLC39A13 (ENSMMMG00000015224) #20	SPI1 (ENSMMMG00000015212) #21	MYBPC3 (ENSMMMG00000015189) #22	MADD (ENSMMMG00000014606) #23	NR1H3 (ENSMMMG00000014541) #24	ACP2 (ENSMMMG00000014527) #25	DDB2 (ENSMMMG00000014518) #26	PACSIN3 (ENSMMMG00000014498) #27	ARFGAP2 (ENSMMMG00000014424) #28	CSTPP1 (ENSMMMG00000014382) #29	LRP4 (ENSMMMG00000014335) #30	CKAP5 (ENSMMMG00000013993) #31	F2 (ENSMMMG00000013961) #32	ZNF408 (ENSMMMG00000013944) #33	ARHGAP1 (ENSMMMG00000013934) #34	ATG13 (ENSMMMG00000013875) #35	HARBI1 (ENSMMMG00000013860)	AMBRA1 (ENSMMMG00000013284)
Eurasian red squirrel	MODERN SPECIES	2	FNBP4 (ENSSVLG00005008986) #9	AGBL2 (ENSSVLG00005009045) #10	MTCH2 (ENSSVLG00005009232) #11	ENSSVLG00005009265 #12	FAM180B (ENSSVLG00005009289)	NDUFS3 (ENSSVLG00005009316) #13	KBTBD4 (ENSSVLG00005009359) #14	PTPMT1 (ENSSVLG00005009417) #15	CELF1 (ENSSVLG00005009492) #17	RAPSN (ENSSVLG00005009920) #18	ENSSVLG00005009993 #19	ENSSVLG00005010167 #20	ENSSVLG00005010225 #19	ENSSVLG00005010302 #20	SPI1 (ENSSVLG00005010597) #21	MYBPC3 (ENSSVLG00005010729) #22	MADD (ENSSVLG00005011762) #23	ENSSVLG00005012055	NR1H3 (ENSSVLG00005012159) #24	ACP2 (ENSSVLG00005012397) #25	DDB2 (ENSSVLG00005012634) #26	PACSIN3 (ENSSVLG00005013010) #27	ARFGAP2 (ENSSVLG00005013354) #28	CSTPP1 (ENSSVLG00005013495) #29	LRP4 (ENSSVLG00005013702) #30	CKAP5 (ENSSVLG00005013939) #31	F2 (ENSSVLG00005014116) #32	ARHGAP1 (ENSSVLG00005014685) #34	ENSSVLG00005014869 #35	HARBI1 (ENSSVLG00005015510)	AMBRA1 (ENSSVLG00005015569)
Lagomorpha	ANCESTRAL SPECIES	4	ENSGT00940000155395	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Rabbit	MODERN SPECIES		ENSOCUG00000030076	PTPRJ (ENSOCUG00000001933) #7	NUP160 (ENSOCUG00000017545) #8	FNBP4 (ENSOCUG00000017534) #9	AGBL2 (ENSOCUG00000017524) #10	MTCH2 (ENSOCUG00000006368) #11	C1QTNF4 (ENSOCUG00000006365) #12	FAM180B (ENSOCUG00000006361)	NDUFS3 (ENSOCUG00000006359) #13	KBTBD4 (ENSOCUG00000006353) #14	PTPMT1 (ENSOCUG00000021229) #15	CELF1 (ENSOCUG00000001311) #17	RAPSN (ENSOCUG00000008892) #18	PSMC3 (ENSOCUG00000026980) #19	SLC39A13 (ENSOCUG00000005557) #20	MYBPC3 (ENSOCUG00000002112) #22	MADD (ENSOCUG00000002099) #23	NR1H3 (ENSOCUG00000002095) #24	ACP2 (ENSOCUG00000013342) #25	DDB2 (ENSOCUG00000002076) #26	PACSIN3 (ENSOCUG00000027715) #27	ENSOCUG00000002073 #28	CSTPP1 (ENSOCUG00000002066) #29	LRP4 (ENSOCUG00000002052) #30	CKAP5 (ENSOCUG00000016200) #31	ZNF408 (ENSOCUG00000010953) #33	ARHGAP1 (ENSOCUG00000016160) #34	ATG13 (ENSOCUG00000016144) #35	HARBI1 (ENSOCUG00000016137)	AMBRA1 (ENSOCUG00000016117)	CHRM4 (ENSOCUG00000021064)
Pika	MODERN SPECIES	3586																MYBPC3 (ENSOPRG00000009569) #22	MADD (ENSOPRG00000009509) #23	NR1H3 (ENSOPRG00000009497) #24	ACP2 (ENSOPRG00000009485) #25	DDB2 (ENSOPRG00000009468) #26	PACSIN3 (ENSOPRG00000009451) #27	ARFGAP2 (ENSOPRG00000009432) #28	CSTPP1 (ENSOPRG00000009417) #29	LRP4 (ENSOPRG00000009347) #30	CKAP5 (ENSOPRG00000009287) #31	ENSOPRG00000009249	ZNF408 (ENSOPRG00000009225) #33	ARHGAP1 (ENSOPRG00000009201) #34	ATG13 (ENSOPRG00000009172) #35
Tree shrew	MODERN SPECIES	1561															ENSTBEG00000001919 #21	MYBPC3 (ENSTBEG00000000966) #22	MADD (ENSTBEG00000000554) #23	NR1H3 (ENSTBEG00000000492) #24	ACP2 (ENSTBEG00000000444) #25	DDB2 (ENSTBEG00000000275) #26
Primates	ANCESTRAL SPECIES		ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	20	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Pan	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00390000003248.a.b.a.b	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Chimpanzee	MODERN SPECIES	2	PTPRJ (ENSPTRG00000003578) #7	ENSPTRG00000050224	NUP160 (ENSPTRG00000003577) #8	FNBP4 (ENSPTRG00000003575) #9	AGBL2 (ENSPTRG00000003574) #10	MTCH2 (ENSPTRG00000003573) #11	FAM180B (ENSPTRG00000023838)	NDUFS3 (ENSPTRG00000003571) #13	KBTBD4 (ENSPTRG00000003570) #14	PTPMT1 (ENSPTRG00000033944) #15	CELF1 (ENSPTRG00000052299) #17	RAPSN (ENSPTRG00000003567) #18	PSMC3 (ENSPTRG00000003565) #19	SLC39A13 (ENSPTRG00000003564) #20	SPI1 (ENSPTRG00000003563) #21	MYBPC3 (ENSPTRG00000003562) #22	MADD (ENSPTRG00000003561) #23	NR1H3 (ENSPTRG00000003560) #24	ACP2 (ENSPTRG00000003559) #25	DDB2 (ENSPTRG00000003558) #26	ENSPTRG00000045675	PACSIN3 (ENSPTRG00000003557) #27	ARFGAP2 (ENSPTRG00000003556) #28	CSTPP1 (ENSPTRG00000003555) #29	LRP4 (ENSPTRG00000003554) #30	CKAP5 (ENSPTRG00000003553) #31	F2 (ENSPTRG00000003552) #32	ZNF408 (ENSPTRG00000003551) #33	ARHGAP1 (ENSPTRG00000003550) #34	ATG13 (ENSPTRG00000003549) #35	HARBI1 (ENSPTRG00000003548)
Bonobo	MODERN SPECIES	2	ENSPPAG00000033896	NUP160 (ENSPPAG00000006588) #8	FNBP4 (ENSPPAG00000031454) #9	AGBL2 (ENSPPAG00000006927) #10	MTCH2 (ENSPPAG00000042054) #11	ENSPPAG00000041168 #12	FAM180B (ENSPPAG00000030975)	NDUFS3 (ENSPPAG00000031162) #13	KBTBD4 (ENSPPAG00000031866) #14	PTPMT1 (ENSPPAG00000040774) #15	CELF1 (ENSPPAG00000033870) #17	RAPSN (ENSPPAG00000042512) #18	PSMC3 (ENSPPAG00000042401) #19	SLC39A13 (ENSPPAG00000042717) #20	SPI1 (ENSPPAG00000036814) #21	MYBPC3 (ENSPPAG00000030985) #22	MADD (ENSPPAG00000043339) #23	NR1H3 (ENSPPAG00000039033) #24	ACP2 (ENSPPAG00000042373) #25	DDB2 (ENSPPAG00000000958) #26	ENSPPAG00000021284	PACSIN3 (ENSPPAG00000040614) #27	ARFGAP2 (ENSPPAG00000030940) #28	CSTPP1 (ENSPPAG00000040870) #29	LRP4 (ENSPPAG00000043379) #30	CKAP5 (ENSPPAG00000030676) #31	F2 (ENSPPAG00000041509) #32	ZNF408 (ENSPPAG00000034993) #33	ARHGAP1 (ENSPPAG00000027953) #34	ATG13 (ENSPPAG00000042268) #35	HARBI1 (ENSPPAG00000035636)
Human	MODERN SPECIES	2	PTPRJ (ENSG00000149177) #7	NUP160 (ENSG00000030066) #8	FNBP4 (ENSG00000109920) #9	AGBL2 (ENSG00000165923) #10	MTCH2 (ENSG00000109919) #11	C1QTNF4 (ENSG00000172247) #12	FAM180B (ENSG00000196666)	KBTBD4 (ENSG00000123444) #14	PTPMT1 (ENSG00000110536) #15	NDUFS3 (ENSG00000213619) #13	CELF1 (ENSG00000149187) #17	RAPSN (ENSG00000165917) #18	PSMC3 (ENSG00000165916) #19	SLC39A13 (ENSG00000165915) #20	SPI1 (ENSG00000066336) #21	MYBPC3 (ENSG00000134571) #22	MADD (ENSG00000110514) #23	NR1H3 (ENSG00000025434) #24	ACP2 (ENSG00000134575) #25	DDB2 (ENSG00000134574) #26	PACSIN3 (ENSG00000165912) #27	ARFGAP2 (ENSG00000149182) #28	CSTPP1 (ENSG00000149179) #29	LRP4 (ENSG00000134569) #30	CKAP5 (ENSG00000175216) #31	F2 (ENSG00000180210) #32	ZNF408 (ENSG00000175213) #33	ARHGAP1 (ENSG00000175220) #34	ATG13 (ENSG00000175224) #35	HARBI1 (ENSG00000180423)	AMBRA1 (ENSG00000110497)
Gorilla	MODERN SPECIES	2	PTPRJ (ENSGGOG00000014808) #7	ENSGGOG00000038581	NUP160 (ENSGGOG00000000719) #8	FNBP4 (ENSGGOG00000014374) #9	AGBL2 (ENSGGOG00000014354) #10	MTCH2 (ENSGGOG00000008281) #11	FAM180B (ENSGGOG00000014401)	NDUFS3 (ENSGGOG00000014393) #13	KBTBD4 (ENSGGOG00000013959) #14	PTPMT1 (ENSGGOG00000013954) #15	CELF1 (ENSGGOG00000004106) #17	RAPSN (ENSGGOG00000007325) #18	PSMC3 (ENSGGOG00000016530) #19	SLC39A13 (ENSGGOG00000016524) #20	SPI1 (ENSGGOG00000006485) #21	MYBPC3 (ENSGGOG00000006471) #22	MADD (ENSGGOG00000008588) #23	NR1H3 (ENSGGOG00000008583) #24	ACP2 (ENSGGOG00000008576) #25	DDB2 (ENSGGOG00000008569) #26	PACSIN3 (ENSGGOG00000008566) #27	ARFGAP2 (ENSGGOG00000008555) #28	CSTPP1 (ENSGGOG00000008547) #29	LRP4 (ENSGGOG00000001024) #30	CKAP5 (ENSGGOG00000006980) #31	F2 (ENSGGOG00000006967) #32	ZNF408 (ENSGGOG00000010152) #33	ARHGAP1 (ENSGGOG00000005697) #34	ATG13 (ENSGGOG00000005689) #35	HARBI1 (ENSGGOG00000004410)	AMBRA1 (ENSGGOG00000011880)
Orangutan	MODERN SPECIES	2	PTPRJ (ENSPPYG00000040803) #7	NUP160 (ENSPPYG00000003293) #8	FNBP4 (ENSPPYG00000003294) #9	AGBL2 (ENSPPYG00000003295) #10	MTCH2 (ENSPPYG00000003296) #11	ENSPPYG00000038525 #12	FAM180B (ENSPPYG00000040243)	NDUFS3 (ENSPPYG00000003299) #13	KBTBD4 (ENSPPYG00000003300) #14	PTPMT1 (ENSPPYG00000003301) #15	CELF1 (ENSPPYG00000003302) #17	RAPSN (ENSPPYG00000003303) #18	PSMC3 (ENSPPYG00000003304) #19	SLC39A13 (ENSPPYG00000003305) #20	SPI1 (ENSPPYG00000003306) #21	MYBPC3 (ENSPPYG00000003307) #22	MADD (ENSPPYG00000003308) #23	NR1H3 (ENSPPYG00000003309) #24	ACP2 (ENSPPYG00000003310) #25	DDB2 (ENSPPYG00000003311) #26	PACSIN3 (ENSPPYG00000003312) #27	ARFGAP2 (ENSPPYG00000003313) #28	CSTPP1 (ENSPPYG00000003314) #29	LRP4 (ENSPPYG00000003315) #30	CKAP5 (ENSPPYG00000003316) #31	F2 (ENSPPYG00000003317) #32	ZNF408 (ENSPPYG00000003318) #33	ARHGAP1 (ENSPPYG00000003319) #34	ATG13 (ENSPPYG00000003320) #35	HARBI1 (ENSPPYG00000003321)	AMBRA1 (ENSPPYG00000003322)
Gibbon	MODERN SPECIES	5	ENSNLEG00000033967	NUP160 (ENSNLEG00000014735) #8	FNBP4 (ENSNLEG00000014720) #9	AGBL2 (ENSNLEG00000014711) #10	MTCH2 (ENSNLEG00000034575) #11	ENSNLEG00000014694	NDUFS3 (ENSNLEG00000028559) #13	KBTBD4 (ENSNLEG00000014672) #14	PTPMT1 (ENSNLEG00000033815) #15	ENSNLEG00000033020	CELF1 (ENSNLEG00000014638) #17	RAPSN (ENSNLEG00000014627) #18	PSMC3 (ENSNLEG00000014572) #19	ENSNLEG00000014565 #20	SPI1 (ENSNLEG00000014555) #21	ENSNLEG00000014525 #22	MADD (ENSNLEG00000014491) #23	NR1H3 (ENSNLEG00000014458) #24	ACP2 (ENSNLEG00000014425) #25	DDB2 (ENSNLEG00000014385) #26	PACSIN3 (ENSNLEG00000014344) #27	ARFGAP2 (ENSNLEG00000014290) #28	CSTPP1 (ENSNLEG00000014283) #29	LRP4 (ENSNLEG00000014206) #30	CKAP5 (ENSNLEG00000014160) #31	F2 (ENSNLEG00000014150) #32	ZNF408 (ENSNLEG00000014132) #33	ARHGAP1 (ENSNLEG00000014095) #34	ATG13 (ENSNLEG00000014030) #35	HARBI1 (ENSNLEG00000014025)	ENSNLEG00000030310
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Cercopithecinae_b	ANCESTRAL SPECIES	27	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718.m #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Cercopithecinae_d	ANCESTRAL SPECIES	61	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718.m #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00910000147892	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Drill	MODERN SPECIES	1384		ENSMLEG00000036492 #8	FNBP4 (ENSMLEG00000041685) #9	AGBL2 (ENSMLEG00000032331) #10	MTCH2 (ENSMLEG00000005996) #11	ENSMLEG00000010056 #12	FAM180B (ENSMLEG00000030769)	NDUFS3 (ENSMLEG00000042396) #13	KBTBD4 (ENSMLEG00000028879) #14	PTPMT1 (ENSMLEG00000020293) #15	CELF1 (ENSMLEG00000040834) #17	RAPSN (ENSMLEG00000037859) #18	ENSMLEG00000033056 #19	SLC39A13 (ENSMLEG00000043749) #20	SPI1 (ENSMLEG00000004290) #21	MYBPC3 (ENSMLEG00000028682) #22	MADD (ENSMLEG00000032767) #23	NR1H3 (ENSMLEG00000044270) #24	ACP2 (ENSMLEG00000042774) #25	DDB2 (ENSMLEG00000032535) #26	PACSIN3 (ENSMLEG00000043145) #27	ARFGAP2 (ENSMLEG00000043821) #28	ENSMLEG00000028689	CSTPP1 (ENSMLEG00000040490) #29	LRP4 (ENSMLEG00000043395) #30	CKAP5 (ENSMLEG00000034738) #31	F2 (ENSMLEG00000043758) #32	ZNF408 (ENSMLEG00000044029) #33	ENSMLEG00000042128	ARHGAP1 (ENSMLEG00000031958) #34	ATG13 (ENSMLEG00000027900) #35
Sooty mangabey	MODERN SPECIES	193	ENSCATG00000002890	PTPRJ (ENSCATG00000045242) #7	NUP160 (ENSCATG00000038914) #8	FNBP4 (ENSCATG00000038551) #9	AGBL2 (ENSCATG00000036090) #10	MTCH2 (ENSCATG00000004816) #11	FAM180B (ENSCATG00000042552)	NDUFS3 (ENSCATG00000029573) #13	KBTBD4 (ENSCATG00000032867) #14	PTPMT1 (ENSCATG00000033306) #15	CELF1 (ENSCATG00000040143) #17	RAPSN (ENSCATG00000043406) #18	ENSCATG00000020806 #19	SLC39A13 (ENSCATG00000042480) #20	SPI1 (ENSCATG00000041395) #21	MYBPC3 (ENSCATG00000033529) #22	MADD (ENSCATG00000019656) #23	NR1H3 (ENSCATG00000031838) #24	ACP2 (ENSCATG00000039992) #25	DDB2 (ENSCATG00000037043) #26	PACSIN3 (ENSCATG00000044836) #27	ARFGAP2 (ENSCATG00000032091) #28	CSTPP1 (ENSCATG00000034976) #29	LRP4 (ENSCATG00000034844) #30	CKAP5 (ENSCATG00000037509) #31	F2 (ENSCATG00000038182) #32	ZNF408 (ENSCATG00000035814) #33	ENSCATG00000034262	ARHGAP1 (ENSCATG00000043789) #34	ATG13 (ENSCATG00000038547) #35	HARBI1 (ENSCATG00000043376)
Olive baboon	MODERN SPECIES	3	PTPRJ (ENSPANG00000019135) #7	NUP160 (ENSPANG00000023008) #8	FNBP4 (ENSPANG00000006036) #9	AGBL2 (ENSPANG00000005171) #10	MTCH2 (ENSPANG00000001893) #11	ENSPANG00000000111 #12	FAM180B (ENSPANG00000000112)	NDUFS3 (ENSPANG00000001634) #13	KBTBD4 (ENSPANG00000017205) #14	ENSPANG00000007187	CELF1 (ENSPANG00000021676) #17	RAPSN (ENSPANG00000004124) #18	PSMC3 (ENSPANG00000017381) #19	SLC39A13 (ENSPANG00000013478) #20	SPI1 (ENSPANG00000004468) #21	MYBPC3 (ENSPANG00000016552) #22	DDB2 (ENSPANG00000006542) #26	ACP2 (ENSPANG00000001892) #25	NR1H3 (ENSPANG00000016658) #24	ENSPANG00000018411 #23	PACSIN3 (ENSPANG00000007979) #27	ARFGAP2 (ENSPANG00000016976) #28	CSTPP1 (ENSPANG00000001891) #29	ENSPANG00000030649	ENSPANG00000023598 #30	HARBI1 (ENSPANG00000023007)	ATG13 (ENSPANG00000006613) #35	ARHGAP1 (ENSPANG00000012059) #34	ZNF408 (ENSPANG00000032617) #33	F2 (ENSPANG00000016657) #32	CKAP5 (ENSPANG00000013230) #31
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Pig-tailed macaque	MODERN SPECIES	485	ENSMNEG00000001585	PTPRJ (ENSMNEG00000044343) #7	NUP160 (ENSMNEG00000044935) #8	FNBP4 (ENSMNEG00000039382) #9	AGBL2 (ENSMNEG00000028554) #10	MTCH2 (ENSMNEG00000020815) #11	FAM180B (ENSMNEG00000033276)	NDUFS3 (ENSMNEG00000030290) #13	KBTBD4 (ENSMNEG00000036394) #14	PTPMT1 (ENSMNEG00000034588) #15	CELF1 (ENSMNEG00000022558) #17	RAPSN (ENSMNEG00000029367) #18	ENSMNEG00000044564 #19	SLC39A13 (ENSMNEG00000040430) #20	SPI1 (ENSMNEG00000027877) #21	MYBPC3 (ENSMNEG00000029406) #22	MADD (ENSMNEG00000030300) #23	NR1H3 (ENSMNEG00000032200) #24	ACP2 (ENSMNEG00000031619) #25	DDB2 (ENSMNEG00000029423) #26	PACSIN3 (ENSMNEG00000041496) #27	ARFGAP2 (ENSMNEG00000042175) #28	CSTPP1 (ENSMNEG00000043208) #29	LRP4 (ENSMNEG00000039196) #30	CKAP5 (ENSMNEG00000045449) #31	F2 (ENSMNEG00000040864) #32	ZNF408 (ENSMNEG00000040215) #33	ARHGAP1 (ENSMNEG00000044079) #34	ATG13 (ENSMNEG00000028546) #35	HARBI1 (ENSMNEG00000039470)	AMBRA1 (ENSMNEG00000041218)
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Rhesus	MODERN SPECIES	5	NUP160 (ENSMMUG00000010869) #8	FNBP4 (ENSMMUG00000058885) #9	AGBL2 (ENSMMUG00000012881) #10	MTCH2 (ENSMMUG00000043682) #11	C1QTNF4 (ENSMMUG00000004294) #12	FAM180B (ENSMMUG00000053860)	NDUFS3 (ENSMMUG00000045281) #13	PTPMT1 (ENSMMUG00000004286) #15	KBTBD4 (ENSMMUG00000004289) #14	CELF1 (ENSMMUG00000011657) #17	ENSMMUG00000064417	RAPSN (ENSMMUG00000009498) #18	PSMC3 (ENSMMUG00000015611) #19	SLC39A13 (ENSMMUG00000015607) #20	SPI1 (ENSMMUG00000015606) #21	MYBPC3 (ENSMMUG00000015604) #22	MADD (ENSMMUG00000015602) #23	NR1H3 (ENSMMUG00000015598) #24	ACP2 (ENSMMUG00000015597) #25	PACSIN3 (ENSMMUG00000006359) #27	ARFGAP2 (ENSMMUG00000006357) #28	CSTPP1 (ENSMMUG00000006355) #29	LRP4 (ENSMMUG00000013100) #30	CKAP5 (ENSMMUG00000003631) #31	F2 (ENSMMUG00000019674) #32	ZNF408 (ENSMMUG00000063711) #33	ARHGAP1 (ENSMMUG00000007831) #34	ATG13 (ENSMMUG00000019672) #35	HARBI1 (ENSMMUG00000059160)	AMBRA1 (ENSMMUG00000011526)	CHRM4 (ENSMMUG00000039412)
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000050002	NUP160 (ENSMFAG00000032004) #8	FNBP4 (ENSMFAG00000045406) #9	AGBL2 (ENSMFAG00000043435) #10	MTCH2 (ENSMFAG00000036915) #11	ENSMFAG00000049478	FAM180B (ENSMFAG00000043005)	NDUFS3 (ENSMFAG00000031067) #13	PTPMT1 (ENSMFAG00000042995) #15	KBTBD4 (ENSMFAG00000032928) #14	CELF1 (ENSMFAG00000003505) #17	RAPSN (ENSMFAG00000037957) #18	PSMC3 (ENSMFAG00000003854) #19	SLC39A13 (ENSMFAG00000003412) #20	ENSMFAG00000050805	MYBPC3 (ENSMFAG00000041621) #22	MADD (ENSMFAG00000039619) #23	NR1H3 (ENSMFAG00000002014) #24	ACP2 (ENSMFAG00000000393) #25	DDB2 (ENSMFAG00000031723) #26	ENSMFAG00000057633	PACSIN3 (ENSMFAG00000039377) #27	ARFGAP2 (ENSMFAG00000030043) #28	CSTPP1 (ENSMFAG00000038437) #29	LRP4 (ENSMFAG00000003482) #30	CKAP5 (ENSMFAG00000001378) #31	F2 (ENSMFAG00000031977) #32	ZNF408 (ENSMFAG00000036575) #33	ARHGAP1 (ENSMFAG00000036912) #34	ATG13 (ENSMFAG00000038288) #35	HARBI1 (ENSMFAG00000002487)
Vervet Monkey	MODERN SPECIES		OR4B1 (ENSCSAG00000019207)	PTPRJ (ENSCSAG00000005879) #7	NUP160 (ENSCSAG00000005866) #8	FNBP4 (ENSCSAG00000005833) #9	AGBL2 (ENSCSAG00000005812) #10	C1QTNF4 (ENSCSAG00000019208) #12	FAM180B (ENSCSAG00000005805)	NDUFS3 (ENSCSAG00000005802) #13	KBTBD4 (ENSCSAG00000005797) #14	PTPMT1 (ENSCSAG00000005789) #15	CELF1 (ENSCSAG00000005786) #17	RAPSN (ENSCSAG00000005780) #18	PSMC3 (ENSCSAG00000005779) #19	SLC39A13 (ENSCSAG00000005760) #20	SPI1 (ENSCSAG00000005757) #21	MYBPC3 (ENSCSAG00000005746) #22	MADD (ENSCSAG00000005705) #23	NR1H3 (ENSCSAG00000005699) #24	ACP2 (ENSCSAG00000005697) #25	DDB2 (ENSCSAG00000005694) #26	PACSIN3 (ENSCSAG00000005693) #27	ARFGAP2 (ENSCSAG00000005691) #28	CSTPP1 (ENSCSAG00000005689) #29	ENSCSAG00000019209	LRP4 (ENSCSAG00000005688) #30	CKAP5 (ENSCSAG00000005686) #31	F2 (ENSCSAG00000005684) #32	ZNF408 (ENSCSAG00000005681) #33	ARHGAP1 (ENSCSAG00000005680) #34	ATG13 (ENSCSAG00000005678) #35	HARBI1 (ENSCSAG00000005676)
Rhinopithecus	ANCESTRAL SPECIES	64	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223.b
Golden snub-nosed monkey	MODERN SPECIES	1568	PTPRJ (ENSRROG00000030580) #7	NUP160 (ENSRROG00000008517) #8	FNBP4 (ENSRROG00000018675) #9	AGBL2 (ENSRROG00000038333) #10	MTCH2 (ENSRROG00000044709) #11	ENSRROG00000045763 #12	FAM180B (ENSRROG00000041406)	NDUFS3 (ENSRROG00000031411) #13	KBTBD4 (ENSRROG00000043819) #14	PTPMT1 (ENSRROG00000030092) #15	CELF1 (ENSRROG00000032588) #17	RAPSN (ENSRROG00000040174) #18	ENSRROG00000041915 #19	SLC39A13 (ENSRROG00000038485) #20	SPI1 (ENSRROG00000045565) #21	MYBPC3 (ENSRROG00000043489) #22	MADD (ENSRROG00000041291) #23	NR1H3 (ENSRROG00000045605) #24	ACP2 (ENSRROG00000028745) #25	DDB2 (ENSRROG00000045383) #26	PACSIN3 (ENSRROG00000041480) #27	ARFGAP2 (ENSRROG00000030954) #28	CSTPP1 (ENSRROG00000045631) #29	LRP4 (ENSRROG00000039736) #30	CKAP5 (ENSRROG00000039765) #31	F2 (ENSRROG00000038131) #32	ZNF408 (ENSRROG00000033904) #33	ARHGAP1 (ENSRROG00000037876) #34	ATG13 (ENSRROG00000031087) #35	HARBI1 (ENSRROG00000031237)	AMBRA1 (ENSRROG00000034630)
Black snub-nosed monkey	MODERN SPECIES	2256																MYBPC3 (ENSRBIG00000040693) #22	MADD (ENSRBIG00000041171) #23	NR1H3 (ENSRBIG00000002426) #24	ACP2 (ENSRBIG00000003979) #25	DDB2 (ENSRBIG00000036127) #26	PACSIN3 (ENSRBIG00000027822) #27	ARFGAP2 (ENSRBIG00000041344) #28	CSTPP1 (ENSRBIG00000040070) #29	ENSRBIG00000043694	LRP4 (ENSRBIG00000024580) #30	CKAP5 (ENSRBIG00000044614) #31	F2 (ENSRBIG00000033898) #32	ZNF408 (ENSRBIG00000010662) #33	ARHGAP1 (ENSRBIG00000029818) #34	ENSRBIG00000044190	ATG13 (ENSRBIG00000044753) #35
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568.s #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Cebidae	ANCESTRAL SPECIES		ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568.s #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Cebidae_a	ANCESTRAL SPECIES	10	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568.s.a #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Bolivian squirrel monkey	MODERN SPECIES	42	PTPRJ (ENSSBOG00000011214) #7	NUP160 (ENSSBOG00000005640) #8	FNBP4 (ENSSBOG00000027946) #9	AGBL2 (ENSSBOG00000023063) #10	MTCH2 (ENSSBOG00000027552) #11	C1QTNF4 (ENSSBOG00000033834) #12	FAM180B (ENSSBOG00000029352)	ENSSBOG00000001386 #13	KBTBD4 (ENSSBOG00000030700) #14	ENSSBOG00000025269	CELF1 (ENSSBOG00000021912) #17	RAPSN (ENSSBOG00000022262) #18	ENSSBOG00000006227 #19	SLC39A13 (ENSSBOG00000010603) #20	SPI1 (ENSSBOG00000022091) #21	MYBPC3 (ENSSBOG00000030340) #22	MADD (ENSSBOG00000021915) #23	NR1H3 (ENSSBOG00000027982) #24	ACP2 (ENSSBOG00000033600) #25	DDB2 (ENSSBOG00000030867) #26	PACSIN3 (ENSSBOG00000033696) #27	ENSSBOG00000031368 #28	CSTPP1 (ENSSBOG00000033686) #29	LRP4 (ENSSBOG00000032261) #30	ENSSBOG00000032726	ENSSBOG00000028063	CKAP5 (ENSSBOG00000031735) #31	F2 (ENSSBOG00000020779) #32	ZNF408 (ENSSBOG00000033023) #33	ARHGAP1 (ENSSBOG00000032970) #34	ATG13 (ENSSBOG00000009657) #35
Capuchin	MODERN SPECIES	58					AGBL2 (ENSCCAG00000026390) #10	MTCH2 (ENSCCAG00000035226) #11	FAM180B (ENSCCAG00000028252)	NDUFS3 (ENSCCAG00000031365) #13	KBTBD4 (ENSCCAG00000020004) #14	PTPMT1 (ENSCCAG00000034346) #15	CELF1 (ENSCCAG00000033487) #17	RAPSN (ENSCCAG00000022014) #18	PSMC3 (ENSCCAG00000025080) #19	SLC39A13 (ENSCCAG00000034535) #20	SPI1 (ENSCCAG00000022473) #21	MYBPC3 (ENSCCAG00000036859) #22	MADD (ENSCCAG00000036617) #23	NR1H3 (ENSCCAG00000024854) #24	ACP2 (ENSCCAG00000022333) #25	DDB2 (ENSCCAG00000031012) #26	PACSIN3 (ENSCCAG00000031265) #27	ENSCCAG00000036464 #28	C11orf49 (ENSCCAG00000028967) #29	LRP4 (ENSCCAG00000034888) #30	ENSCCAG00000033202	CKAP5 (ENSCCAG00000029859) #31	PGAM4 (ENSCCAG00000037081)	F2 (ENSCCAG00000028699) #32	ZNF408 (ENSCCAG00000029472) #33	ARHGAP1 (ENSCCAG00000005865) #34	ATG13 (ENSCCAG00000033415) #35
Marmoset	MODERN SPECIES	2	OR4B1 (ENSCJAG00000044825)	PTPRJ (ENSCJAG00000020595) #7	NUP160 (ENSCJAG00000020260) #8	FNBP4 (ENSCJAG00000020254) #9	AGBL2 (ENSCJAG00000020239) #10	MTCH2 (ENSCJAG00000020213) #11	ENSCJAG00000039852 #12	FAM180B (ENSCJAG00000043701)	NDUFS3 (ENSCJAG00000020194) #13	KBTBD4 (ENSCJAG00000020173) #14	PTPMT1 (ENSCJAG00000020163) #15	CELF1 (ENSCJAG00000020133) #17	RAPSN (ENSCJAG00000020129) #18	ENSCJAG00000020108 #19	SPI1 (ENSCJAG00000020100) #21	MYBPC3 (ENSCJAG00000020066) #22	MADD (ENSCJAG00000020045) #23	NR1H3 (ENSCJAG00000020019) #24	ACP2 (ENSCJAG00000020008) #25	SLC39A13 (ENSCJAG00000020101) #20	DDB2 (ENSCJAG00000020000) #26	PACSIN3 (ENSCJAG00000019993) #27	ENSCJAG00000019965 #28	CSTPP1 (ENSCJAG00000019962) #29	LRP4 (ENSCJAG00000019944) #30	CKAP5 (ENSCJAG00000019878) #31	F2 (ENSCJAG00000019864) #32	ZNF408 (ENSCJAG00000019859) #33	ARHGAP1 (ENSCJAG00000019849) #34	ATG13 (ENSCJAG00000019823) #35	HARBI1 (ENSCJAG00000046232)
Mas night monkey	MODERN SPECIES	349	NUP160 (ENSANAG00000025545) #8	ENSANAG00000034432	ENSANAG00000013634	FNBP4 (ENSANAG00000027721) #9	AGBL2 (ENSANAG00000033268) #10	MTCH2 (ENSANAG00000022984) #11	FAM180B (ENSANAG00000021375)	NDUFS3 (ENSANAG00000030907) #13	KBTBD4 (ENSANAG00000029505) #14	ENSANAG00000033117	CELF1 (ENSANAG00000031770) #17	RAPSN (ENSANAG00000022248) #18	ENSANAG00000037076 #19	SLC39A13 (ENSANAG00000027448) #20	SPI1 (ENSANAG00000029485) #21	MYBPC3 (ENSANAG00000023289) #22	MADD (ENSANAG00000024603) #23	NR1H3 (ENSANAG00000037990) #24	ACP2 (ENSANAG00000032696) #25	DDB2 (ENSANAG00000036510) #26	PACSIN3 (ENSANAG00000030038) #27	ARFGAP2 (ENSANAG00000031850) #28	ENSANAG00000026796	CSTPP1 (ENSANAG00000037882) #29	LRP4 (ENSANAG00000038492) #30	ENSANAG00000038320	CKAP5 (ENSANAG00000031236) #31	F2 (ENSANAG00000036904) #32	ZNF408 (ENSANAG00000036294) #33	ARHGAP1 (ENSANAG00000038289) #34	ATG13 (ENSANAG00000036615) #35
Tarsier	MODERN SPECIES	2325															SPI1 (ENSTSYG00000025440) #21	MYBPC3 (ENSTSYG00000035151) #22
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Lemuriformes	ANCESTRAL SPECIES	16	ENSGT00940000155395	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Lemuriformes_a	ANCESTRAL SPECIES	75	ENSGT00940000155395	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Greater bamboo lemur	MODERN SPECIES	1076	PTPRJ (ENSPSMG00000019631) #7	NUP160 (ENSPSMG00000019675) #8	FNBP4 (ENSPSMG00000019761) #9	AGBL2 (ENSPSMG00000019802) #10	ENSPSMG00000019812	ENSPSMG00000019906 #11	FAM180B (ENSPSMG00000019935)	NDUFS3 (ENSPSMG00000019959) #13	KBTBD4 (ENSPSMG00000019995) #14	PTPMT1 (ENSPSMG00000020020) #15	CELF1 (ENSPSMG00000020100) #17	RAPSN (ENSPSMG00000020171) #18	PSMC3 (ENSPSMG00000020244) #19	SLC39A13 (ENSPSMG00000020336) #20	SPI1 (ENSPSMG00000020380) #21	MYBPC3 (ENSPSMG00000020533) #22	MADD (ENSPSMG00000021740) #23	NR1H3 (ENSPSMG00000022646) #24	ACP2 (ENSPSMG00000022714) #25	DDB2 (ENSPSMG00000022768) #26	PACSIN3 (ENSPSMG00000022785) #27	ARFGAP2 (ENSPSMG00000022927) #28	CSTPP1 (ENSPSMG00000022997) #29
Coquerels sifaka	MODERN SPECIES	328	ENSPCOG00000013318	PTPRJ (ENSPCOG00000017943) #7	NUP160 (ENSPCOG00000013611) #8	FNBP4 (ENSPCOG00000016107) #9	AGBL2 (ENSPCOG00000020344) #10	MTCH2 (ENSPCOG00000018416) #11	FAM180B (ENSPCOG00000014736)	NDUFS3 (ENSPCOG00000012926) #13	KBTBD4 (ENSPCOG00000017241) #14	PTPMT1 (ENSPCOG00000026725) #15	CELF1 (ENSPCOG00000021865) #17	RAPSN (ENSPCOG00000019055) #18	PSMC3 (ENSPCOG00000020878) #19	SLC39A13 (ENSPCOG00000020868) #20	SPI1 (ENSPCOG00000026208) #21	MYBPC3 (ENSPCOG00000018047) #22	MADD (ENSPCOG00000013832) #23	NR1H3 (ENSPCOG00000023831) #24	ACP2 (ENSPCOG00000027729) #25	DDB2 (ENSPCOG00000022207) #26	PACSIN3 (ENSPCOG00000020469) #27	ARFGAP2 (ENSPCOG00000028490) #28	CSTPP1 (ENSPCOG00000013763) #29	LRP4 (ENSPCOG00000028608) #30	CKAP5 (ENSPCOG00000017517) #31	F2 (ENSPCOG00000018345) #32	ZNF408 (ENSPCOG00000028698) #33	ARHGAP1 (ENSPCOG00000020308) #34	ATG13 (ENSPCOG00000023763) #35	HARBI1 (ENSPCOG00000027989)	AMBRA1 (ENSPCOG00000028231)
Mouse lemur	MODERN SPECIES	27	FNBP4 (ENSMICG00000011329) #9	AGBL2 (ENSMICG00000011310) #10	ENSMICG00000034382	ENSMICG00000005314	MTCH2 (ENSMICG00000027810) #11	FAM180B (ENSMICG00000001091)	NDUFS3 (ENSMICG00000045989) #13	KBTBD4 (ENSMICG00000001087) #14	PTPMT1 (ENSMICG00000028273) #15	CELF1 (ENSMICG00000045113) #17	ENSMICG00000043341	RAPSN (ENSMICG00000007148) #18	PSMC3 (ENSMICG00000007138) #19	SLC39A13 (ENSMICG00000007125) #20	SPI1 (ENSMICG00000007120) #21	MYBPC3 (ENSMICG00000007096) #22	MADD (ENSMICG00000007074) #23	NR1H3 (ENSMICG00000007066) #24	ACP2 (ENSMICG00000007053) #25	DDB2 (ENSMICG00000007047) #26	PACSIN3 (ENSMICG00000007038) #27	ENSMICG00000007019 #28	CSTPP1 (ENSMICG00000007010) #29	LRP4 (ENSMICG00000006982) #30	CKAP5 (ENSMICG00000006951) #31	F2 (ENSMICG00000006934) #32	ZNF408 (ENSMICG00000045320) #33	ARHGAP1 (ENSMICG00000006918) #34	ATG13 (ENSMICG00000006905) #35	HARBI1 (ENSMICG00000029266)	AMBRA1 (ENSMICG00000006891)
Bushbaby	MODERN SPECIES	116	NUP160 (ENSOGAG00000007135) #8	FNBP4 (ENSOGAG00000011403) #9	AGBL2 (ENSOGAG00000011402) #10	MTCH2 (ENSOGAG00000011607) #11	C1QTNF4 (ENSOGAG00000025902) #12	FAM180B (ENSOGAG00000032394)	NDUFS3 (ENSOGAG00000011606) #13	ENSOGAG00000030764	KBTBD4 (ENSOGAG00000028799) #14	PTPMT1 (ENSOGAG00000031935) #15	CELF1 (ENSOGAG00000011600) #17	RAPSN (ENSOGAG00000027783) #18	ENSOGAG00000015289 #19	SLC39A13 (ENSOGAG00000012440) #20	SPI1 (ENSOGAG00000012435) #21	MYBPC3 (ENSOGAG00000012425) #22	MADD (ENSOGAG00000012414) #23	NR1H3 (ENSOGAG00000012410) #24	ACP2 (ENSOGAG00000025562) #25	DDB2 (ENSOGAG00000012408) #26	PACSIN3 (ENSOGAG00000012403) #27	ARFGAP2 (ENSOGAG00000012399) #28	ENSOGAG00000026518	CSTPP1 (ENSOGAG00000012396) #29	LRP4 (ENSOGAG00000011979) #30	CKAP5 (ENSOGAG00000004560) #31	F2 (ENSOGAG00000004555) #32	ZNF408 (ENSOGAG00000034080) #33	ARHGAP1 (ENSOGAG00000014288) #34	ATG13 (ENSOGAG00000004547) #35	HARBI1 (ENSOGAG00000004554)
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Eulipotyphla	ANCESTRAL SPECIES	133																ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26
Hedgehog	MODERN SPECIES	1291																ENSEEUG00000000080 #22	MADD (ENSEEUG00000000071) #23
Common shrew	MODERN SPECIES	2331																ENSSARG00000002570 #22	ENSSARG00000002437 #23	NR1H3 (ENSSARG00000002403) #24	ACP2 (ENSSARG00000002360) #25	DDB2 (ENSSARG00000002337) #26
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	7	SYT13 (ENSPCTG00005015941)	CHST1 (ENSPCTG00005016008)	SLC35C1 (ENSPCTG00005016021)	CRY2 (ENSPCTG00005016092)	MAPK8IP1 (ENSPCTG00005016404)	C16H11orf94 (ENSPCTG00005016710)	PEX16 (ENSPCTG00005016747)	LARGE2 (ENSPCTG00005016908)	PHF21A (ENSPCTG00005017366)	AMBRA1 (ENSPCTG00005017524)	ENSPCTG00005018324 #35	CKAP5 (ENSPCTG00005019025) #31	LRP4 (ENSPCTG00005019305) #30	ENSPCTG00005019663	NR1H3 (ENSPCTG00005019704) #24	ENSPCTG00005019900 #22	CELF1 (ENSPCTG00005020176) #17	NDUFS3 (ENSPCTG00005020272) #13	FAM180B (ENSPCTG00005020314)	ENSPCTG00005020333 #12	ENSPCTG00005020351 #11	AGBL2 (ENSPCTG00005020384) #10	FNBP4 (ENSPCTG00005020443) #9	NUP160 (ENSPCTG00005020494) #8	PTPRJ (ENSPCTG00005020731) #7	OR8K5 (ENSPCTG00005021273)	ENSPCTG00005021353	APLNR (ENSPCTG00005021748)	LRRC55 (ENSPCTG00005021755)	UBE2L6 (ENSPCTG00005021768)	SERPING1 (ENSPCTG00005021786)
Sperm whale	MODERN SPECIES	222													PSMC3 (ENSPCTG00005018286) #19	SLC39A13 (ENSPCTG00005018146) #20	SPI1 (ENSPCTG00005018053) #21	ENSPCTG00005017868 #22
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Narwhal	MODERN SPECIES	314	ENSMMNG00015021918	NUP160 (ENSMMNG00015021914) #8	FNBP4 (ENSMMNG00015021908) #9	AGBL2 (ENSMMNG00015021887) #10	MTCH2 (ENSMMNG00015021874) #11	ENSMMNG00015021868 #12	FAM180B (ENSMMNG00015021863)	NDUFS3 (ENSMMNG00015021859) #13	KBTBD4 (ENSMMNG00015021852) #14	PTPMT1 (ENSMMNG00015021844) #15	CELF1 (ENSMMNG00015021830) #17	RAPSN (ENSMMNG00015021818) #18	PSMC3 (ENSMMNG00015021802) #19	SLC39A13 (ENSMMNG00015021773) #20	SPI1 (ENSMMNG00015021760) #21	MYBPC3 (ENSMMNG00015021686) #22	MADD (ENSMMNG00015021102) #23	NR1H3 (ENSMMNG00015020682) #24	ACP2 (ENSMMNG00015020547) #25	DDB2 (ENSMMNG00015020426) #26	PACSIN3 (ENSMMNG00015020360) #27	ARFGAP2 (ENSMMNG00015020303) #28	CSTPP1 (ENSMMNG00015020243) #29	LRP4 (ENSMMNG00015020152) #30	CKAP5 (ENSMMNG00015019798) #31	F2 (ENSMMNG00015019642) #32	ZNF408 (ENSMMNG00015019610) #33	ARHGAP1 (ENSMMNG00015019583) #34	ATG13 (ENSMMNG00015019491) #35	HARBI1 (ENSMMNG00015019436)	AMBRA1 (ENSMMNG00015019294)
Beluga whale	MODERN SPECIES	7	ENSDLEG00000003879	NUP160 (ENSDLEG00000003898) #8	FNBP4 (ENSDLEG00000003930) #9	ENSDLEG00000003961 #10	MTCH2 (ENSDLEG00000003979) #11	ENSDLEG00000004045 #12	FAM180B (ENSDLEG00000000116)	NDUFS3 (ENSDLEG00000000150) #13	KBTBD4 (ENSDLEG00000000205) #14	PTPMT1 (ENSDLEG00000000244) #15	CELF1 (ENSDLEG00000000264) #17	RAPSN (ENSDLEG00000000322) #18	PSMC3 (ENSDLEG00000000360) #19	SLC39A13 (ENSDLEG00000000405) #20	SPI1 (ENSDLEG00000000443) #21	MYBPC3 (ENSDLEG00000000811) #22	MADD (ENSDLEG00000003539) #23	NR1H3 (ENSDLEG00000013403) #24	ACP2 (ENSDLEG00000013563) #25	DDB2 (ENSDLEG00000014125) #26	PACSIN3 (ENSDLEG00000014213) #27	ARFGAP2 (ENSDLEG00000014461) #28	CSTPP1 (ENSDLEG00000016182) #29	LRP4 (ENSDLEG00000016355) #30	CKAP5 (ENSDLEG00000018239) #31	F2 (ENSDLEG00000018821) #32	ZNF408 (ENSDLEG00000018910) #33	ARHGAP1 (ENSDLEG00000018942) #34	ATG13 (ENSDLEG00000019150) #35	HARBI1 (ENSDLEG00000019555)	AMBRA1 (ENSDLEG00000019560)
Vaquita	MODERN SPECIES	19	PTPRJ (ENSPSNG00000012615) #7	NUP160 (ENSPSNG00000012237) #8	FNBP4 (ENSPSNG00000012146) #9	AGBL2 (ENSPSNG00000012052) #10	MTCH2 (ENSPSNG00000011989) #11	ENSPSNG00000011949 #12	FAM180B (ENSPSNG00000011919)	NDUFS3 (ENSPSNG00000011780) #13	KBTBD4 (ENSPSNG00000011651) #14	PTPMT1 (ENSPSNG00000011591) #15	CELF1 (ENSPSNG00000011349) #17	RAPSN (ENSPSNG00000010989) #18	PSMC3 (ENSPSNG00000010889) #19	SLC39A13 (ENSPSNG00000010822) #20	SPI1 (ENSPSNG00000010691) #21	MYBPC3 (ENSPSNG00000009622) #22	MADD (ENSPSNG00000007281) #23	NR1H3 (ENSPSNG00000006534) #24	ACP2 (ENSPSNG00000006273) #25	DDB2 (ENSPSNG00000006057) #26	PACSIN3 (ENSPSNG00000006003) #27	ENSPSNG00000005975 #28	CSTPP1 (ENSPSNG00000005920) #29	LRP4 (ENSPSNG00000005781) #30	CKAP5 (ENSPSNG00000005667) #31	F2 (ENSPSNG00000005610) #32	ZNF408 (ENSPSNG00000005582) #33	ARHGAP1 (ENSPSNG00000005549) #34	ATG13 (ENSPSNG00000005490) #35	HARBI1 (ENSPSNG00000005453)	AMBRA1 (ENSPSNG00000005291)
Dolphin	MODERN SPECIES	2041					MTCH2 (ENSTTRG00000014169) #11	C1QTNF4 (ENSTTRG00000014168) #12	FAM180B (ENSTTRG00000014167)	NDUFS3 (ENSTTRG00000014164) #13	KBTBD4 (ENSTTRG00000014159) #14	ENSTTRG00000014158	CELF1 (ENSTTRG00000014157) #17	RAPSN (ENSTTRG00000014156) #18	PSMC3 (ENSTTRG00000014155) #19	SLC39A13 (ENSTTRG00000014154) #20	SPI1 (ENSTTRG00000014153) #21	MYBPC3 (ENSTTRG00000014152) #22	MADD (ENSTTRG00000014150) #23	NR1H3 (ENSTTRG00000014149) #24	ACP2 (ENSTTRG00000014147) #25	DDB2 (ENSTTRG00000014146) #26	PACSIN3 (ENSTTRG00000014143) #27	ARFGAP2 (ENSTTRG00000014137) #28	CSTPP1 (ENSTTRG00000014133) #29	LRP4 (ENSTTRG00000014129) #30	CKAP5 (ENSTTRG00000014121) #31
Blue whale	MODERN SPECIES	19	ENSBMSG00010022025	NUP160 (ENSBMSG00010022017) #8	FNBP4 (ENSBMSG00010022012) #9	AGBL2 (ENSBMSG00010022008) #10	MTCH2 (ENSBMSG00010022003) #11	ENSBMSG00010022000 #12	FAM180B (ENSBMSG00010021998)	NDUFS3 (ENSBMSG00010021996) #13	KBTBD4 (ENSBMSG00010021993) #14	PTPMT1 (ENSBMSG00010021990) #15	CELF1 (ENSBMSG00010021983) #17	RAPSN (ENSBMSG00010021975) #18	PSMC3 (ENSBMSG00010021968) #19	SLC39A13 (ENSBMSG00010021960) #20	SPI1 (ENSBMSG00010021953) #21	MYBPC3 (ENSBMSG00010021914) #22	MADD (ENSBMSG00010018497) #23	NR1H3 (ENSBMSG00010018229) #24	ACP2 (ENSBMSG00010018103) #25	DDB2 (ENSBMSG00010017897) #26	PACSIN3 (ENSBMSG00010017852) #27	ARFGAP2 (ENSBMSG00010017710) #28	CSTPP1 (ENSBMSG00010017644) #29	LRP4 (ENSBMSG00010017494) #30	CKAP5 (ENSBMSG00010017392) #31	F2 (ENSBMSG00010017325) #32	ZNF408 (ENSBMSG00010017299) #33	ENSBMSG00010017280	ARHGAP1 (ENSBMSG00010017220) #34	ATG13 (ENSBMSG00010017110) #35	HARBI1 (ENSBMSG00010017065)
Pecora	ANCESTRAL SPECIES	7	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Percora_a	ANCESTRAL SPECIES	6	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Bovidae	ANCESTRAL SPECIES	6	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Bovinae	ANCESTRAL SPECIES	26	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
American bison	MODERN SPECIES	3100	ENSBBBG00000012168	PTPRJ (ENSBBBG00000012200) #7	NUP160 (ENSBBBG00000012218) #8	FNBP4 (ENSBBBG00000012233) #9	AGBL2 (ENSBBBG00000012259) #10	MTCH2 (ENSBBBG00000002309) #11	FAM180B (ENSBBBG00000002312)	NDUFS3 (ENSBBBG00000012284) #13	KBTBD4 (ENSBBBG00000012295) #14	PTPMT1 (ENSBBBG00000001931) #15	CELF1 (ENSBBBG00000012337) #17	RAPSN (ENSBBBG00000002335) #18	PSMC3 (ENSBBBG00000002347) #19	SLC39A13 (ENSBBBG00000002358) #20	ENSBBBG00000012398	MYBPC3 (ENSBBBG00000012763) #22	MADD (ENSBBBG00000013202) #23	NR1H3 (ENSBBBG00000013293) #24	ACP2 (ENSBBBG00000001605) #25	DDB2 (ENSBBBG00000007213) #26	PACSIN3 (ENSBBBG00000013420) #27	ARFGAP2 (ENSBBBG00000013487) #28	CSTPP1 (ENSBBBG00000013522) #29	LRP4 (ENSBBBG00000007215) #30	CKAP5 (ENSBBBG00000002889) #31	F2 (ENSBBBG00000002915) #32	ZNF408 (ENSBBBG00000013728) #33	ARHGAP1 (ENSBBBG00000013736) #34	ATG13 (ENSBBBG00000002985) #35	HARBI1 (ENSBBBG00000013882)	AMBRA1 (ENSBBBG00000014063)
Bos	ANCESTRAL SPECIES	25	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Bos_a	ANCESTRAL SPECIES	36	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00940000155097.e.a
Wild yak	MODERN SPECIES	1047						ENSBMUG00000024672	NDUFS3 (ENSBMUG00000024660) #13	KBTBD4 (ENSBMUG00000024643) #14	ENSBMUG00000024626 #15	CELF1 (ENSBMUG00000024594) #17	RAPSN (ENSBMUG00000024536) #18	PSMC3 (ENSBMUG00000024510) #19	SLC39A13 (ENSBMUG00000024475) #20	SPI1 (ENSBMUG00000024426) #21	MADD (ENSBMUG00000024292) #23	MYBPC3 (ENSBMUG00000023919) #22	NR1H3 (ENSBMUG00000023834) #24	ACP2 (ENSBMUG00000023770) #25	DDB2 (ENSBMUG00000023687) #26	PACSIN3 (ENSBMUG00000023616) #27	ARFGAP2 (ENSBMUG00000023585) #28	CSTPP1 (ENSBMUG00000023500) #29	LRP4 (ENSBMUG00000023473) #30	CKAP5 (ENSBMUG00000023430) #31	F2 (ENSBMUG00000023372) #32	ZNF408 (ENSBMUG00000023350) #33	ARHGAP1 (ENSBMUG00000023337) #34	ATG13 (ENSBMUG00000023285) #35	HARBI1 (ENSBMUG00000023163)	ENSBMUG00000023155	AMBRA1 (ENSBMUG00000023114)
Domestic yak	MODERN SPECIES	4	PTPRJ (ENSBGRG00000021865) #7	NUP160 (ENSBGRG00000020390) #8	FNBP4 (ENSBGRG00000020099) #9	AGBL2 (ENSBGRG00000019908) #10	MTCH2 (ENSBGRG00000019732) #11	ENSBGRG00000019699 #12	FAM180B (ENSBGRG00000019645)	NDUFS3 (ENSBGRG00000019602) #13	KBTBD4 (ENSBGRG00000019526) #14	ENSBGRG00000019424 #15	CELF1 (ENSBGRG00000019052) #17	RAPSN (ENSBGRG00000018674) #18	PSMC3 (ENSBGRG00000018446) #19	SLC39A13 (ENSBGRG00000018326) #20	SPI1 (ENSBGRG00000018200) #21	MYBPC3 (ENSBGRG00000017872) #22	MADD (ENSBGRG00000017261) #23	NR1H3 (ENSBGRG00000016958) #24	ACP2 (ENSBGRG00000016478) #25	DDB2 (ENSBGRG00000016037) #26	PACSIN3 (ENSBGRG00000015878) #27	ARFGAP2 (ENSBGRG00000015155) #28	CSTPP1 (ENSBGRG00000014751) #29	LRP4 (ENSBGRG00000014275) #30	CKAP5 (ENSBGRG00000013953) #31	F2 (ENSBGRG00000013793) #32	ZNF408 (ENSBGRG00000013630) #33	ARHGAP1 (ENSBGRG00000013511) #34	ATG13 (ENSBGRG00000013263) #35	HARBI1 (ENSBGRG00000013222)	TAF9 (ENSBGRG00000013181)
Bos_b	ANCESTRAL SPECIES	12	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Cow	MODERN SPECIES	6	OR4B1 (ENSBTAG00000051670)	PTPRJ (ENSBTAG00000024715) #7	NUP160 (ENSBTAG00000021125) #8	FNBP4 (ENSBTAG00000020911) #9	AGBL2 (ENSBTAG00000051215) #10	MTCH2 (ENSBTAG00000018742) #11	FAM180B (ENSBTAG00000055123)	NDUFS3 (ENSBTAG00000018483) #13	KBTBD4 (ENSBTAG00000018482) #14	PTPMT1 (ENSBTAG00000018479) #15	CELF1 (ENSBTAG00000002520) #17	RAPSN (ENSBTAG00000021745) #18	PSMC3 (ENSBTAG00000021744) #19	SLC39A13 (ENSBTAG00000019436) #20	SPI1 (ENSBTAG00000021709) #21	MYBPC3 (ENSBTAG00000021707) #22	MADD (ENSBTAG00000021700) #23	NR1H3 (ENSBTAG00000010681) #24	ACP2 (ENSBTAG00000021002) #25	DDB2 (ENSBTAG00000020999) #26	PACSIN3 (ENSBTAG00000009576) #27	ARFGAP2 (ENSBTAG00000009574) #28	CSTPP1 (ENSBTAG00000009573) #29	LRP4 (ENSBTAG00000008429) #30	CKAP5 (ENSBTAG00000004448) #31	F2 (ENSBTAG00000007148) #32	ZNF408 (ENSBTAG00000027557) #33	ARHGAP1 (ENSBTAG00000016501) #34	ATG13 (ENSBTAG00000017325) #35	HARBI1 (ENSBTAG00000004639)	AMBRA1 (ENSBTAG00000004282)
Hybrid Bos Indicus	MODERN SPECIES	6	PTPRJ (ENSBIXG00005020754) #7	NUP160 (ENSBIXG00005020715) #8	NDUFS3 (ENSBIXG00005020641) #13	FNBP4 (ENSBIXG00005020572) #9	AGBL2 (ENSBIXG00005020494) #10	MTCH2 (ENSBIXG00005003456) #11	ENSBIXG00005020389 #12	FAM180B (ENSBIXG00005020374)	KBTBD4 (ENSBIXG00005020354) #14	PTPMT1 (ENSBIXG00005007208) #15	CELF1 (ENSBIXG00005020290) #17	RAPSN (ENSBIXG00005003352) #18	PSMC3 (ENSBIXG00005020171) #19	SLC39A13 (ENSBIXG00005003304) #20	SPI1 (ENSBIXG00005020034) #21	MYBPC3 (ENSBIXG00005002636) #22	MADD (ENSBIXG00005003241) #23	NR1H3 (ENSBIXG00005019630) #24	ACP2 (ENSBIXG00005019552) #25	DDB2 (ENSBIXG00005019438) #26	PACSIN3 (ENSBIXG00005019375) #27	ARFGAP2 (ENSBIXG00005019318) #28	CSTPP1 (ENSBIXG00005019202) #29	LRP4 (ENSBIXG00005019152) #30	CKAP5 (ENSBIXG00005018988) #31	F2 (ENSBIXG00005018882) #32	ZNF408 (ENSBIXG00005018816) #33	ARHGAP1 (ENSBIXG00005003058) #34	ATG13 (ENSBIXG00005003045) #35	HARBI1 (ENSBIXG00005018637)	AMBRA1 (ENSBIXG00005007656)
Caprinae	ANCESTRAL SPECIES	6	ENSGT00940000157376	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Goat	MODERN SPECIES	6	ENSCHIG00000021050	NUP160 (ENSCHIG00000021564) #8	FNBP4 (ENSCHIG00000013162) #9	AGBL2 (ENSCHIG00000022131) #10	MTCH2 (ENSCHIG00000012614) #11	C1QTNF4 (ENSCHIG00000003743) #12	FAM180B (ENSCHIG00000011395)	NDUFS3 (ENSCHIG00000017760) #13	KBTBD4 (ENSCHIG00000016297) #14	PTPMT1 (ENSCHIG00000015788) #15	CELF1 (ENSCHIG00000024582) #17	RAPSN (ENSCHIG00000015950) #18	PSMC3 (ENSCHIG00000010249) #19	SLC39A13 (ENSCHIG00000018746) #20	SPI1 (ENSCHIG00000019747) #21	MYBPC3 (ENSCHIG00000021976) #22	MADD (ENSCHIG00000003140) #23	NR1H3 (ENSCHIG00000013751) #24	ACP2 (ENSCHIG00000017023) #25	DDB2 (ENSCHIG00000021645) #26	PACSIN3 (ENSCHIG00000007034) #27	ARFGAP2 (ENSCHIG00000003758) #28	CSTPP1 (ENSCHIG00000013768) #29	LRP4 (ENSCHIG00000024661) #30	CKAP5 (ENSCHIG00000018334) #31	ENSCHIG00000009743	F2 (ENSCHIG00000024270) #32	ZNF408 (ENSCHIG00000025346) #33	ARHGAP1 (ENSCHIG00000022137) #34	ATG13 (ENSCHIG00000014614) #35	HARBI1 (ENSCHIG00000014327)
Rambouillet Sheep	MODERN SPECIES	6	ENSOARG00020015421	NUP160 (ENSOARG00020015202) #8	FNBP4 (ENSOARG00020015042) #9	AGBL2 (ENSOARG00020014911) #10	MTCH2 (ENSOARG00020014843) #11	ENSOARG00020014813 #12	FAM180B (ENSOARG00020014767)	NDUFS3 (ENSOARG00020014698) #13	ENSOARG00020014554 #14	ENSOARG00020014495 #15	CELF1 (ENSOARG00020014203) #17	RAPSN (ENSOARG00020013803) #18	PSMC3 (ENSOARG00020013548) #19	SLC39A13 (ENSOARG00020013213) #20	SPI1 (ENSOARG00020013137) #21	MYBPC3 (ENSOARG00020012776) #22	MADD (ENSOARG00020011512) #23	NR1H3 (ENSOARG00020011361) #24	ACP2 (ENSOARG00020010726) #25	DDB2 (ENSOARG00020010497) #26	PACSIN3 (ENSOARG00020010393) #27	ARFGAP2 (ENSOARG00020010021) #28	CSTPP1 (ENSOARG00020023714) #29	LRP4 (ENSOARG00020023551) #30	CKAP5 (ENSOARG00020023388) #31	F2 (ENSOARG00020023298) #32	ZNF408 (ENSOARG00020023273) #33	ARHGAP1 (ENSOARG00020023238) #34	ATG13 (ENSOARG00020023093) #35	HARBI1 (ENSOARG00020023065)	AMBRA1 (ENSOARG00020022829)
Siberian musk deer	MODERN SPECIES	118	NUP160 (ENSMMSG00000002340) #8	FNBP4 (ENSMMSG00000002398) #9	AGBL2 (ENSMMSG00000002474) #10	MTCH2 (ENSMMSG00000002552) #11	ENSMMSG00000002578 #12	FAM180B (ENSMMSG00000002588)	NDUFS3 (ENSMMSG00000002602) #13	KBTBD4 (ENSMMSG00000002638) #14	PTPMT1 (ENSMMSG00000002650) #15	CELF1 (ENSMMSG00000005936) #17	ENSMMSG00000006034	RAPSN (ENSMMSG00000006063) #18	PSMC3 (ENSMMSG00000006116) #19	SLC39A13 (ENSMMSG00000006163) #20	SPI1 (ENSMMSG00000006220) #21	MYBPC3 (ENSMMSG00000006254) #22	MADD (ENSMMSG00000006433) #23	NR1H3 (ENSMMSG00000006800) #24	ACP2 (ENSMMSG00000006877) #25	DDB2 (ENSMMSG00000007023) #26	ENSMMSG00000007128	PACSIN3 (ENSMMSG00000007142) #27	ARFGAP2 (ENSMMSG00000007196) #28	CSTPP1 (ENSMMSG00000007479) #29	LRP4 (ENSMMSG00000007545) #30	CKAP5 (ENSMMSG00000007823) #31	F2 (ENSMMSG00000008000) #32	ZNF408 (ENSMMSG00000008033) #33	ARHGAP1 (ENSMMSG00000008062) #34	ATG13 (ENSMMSG00000008155) #35	HARBI1 (ENSMMSG00000008321)
Camelidae	ANCESTRAL SPECIES	25	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Arabian camel	MODERN SPECIES	1	PTPRJ (ENSCDRG00005001148) #7	NUP160 (ENSCDRG00005001484) #8	FNBP4 (ENSCDRG00005001528) #9	AGBL2 (ENSCDRG00005001568) #10	MTCH2 (ENSCDRG00005001631) #11	ENSCDRG00005001659 #12	FAM180B (ENSCDRG00005001672)	NDUFS3 (ENSCDRG00005001699) #13	KBTBD4 (ENSCDRG00005001788) #14	PTPMT1 (ENSCDRG00005001832) #15	CELF1 (ENSCDRG00005001849) #17	RAPSN (ENSCDRG00005001888) #18	PSMC3 (ENSCDRG00005001939) #19	SLC39A13 (ENSCDRG00005001964) #20	SPI1 (ENSCDRG00005001988) #21	MYBPC3 (ENSCDRG00005002015) #22	MADD (ENSCDRG00005002594) #23	NR1H3 (ENSCDRG00005006795) #24	ACP2 (ENSCDRG00005006623) #25	DDB2 (ENSCDRG00005007029) #26	PACSIN3 (ENSCDRG00005007398) #27	ARFGAP2 (ENSCDRG00005007474) #28	CSTPP1 (ENSCDRG00005008190) #29	ENSCDRG00005008443	LRP4 (ENSCDRG00005008476) #30	CKAP5 (ENSCDRG00005008832) #31	F2 (ENSCDRG00005009091) #32	ZNF408 (ENSCDRG00005009244) #33	ARHGAP1 (ENSCDRG00005009320) #34	ATG13 (ENSCDRG00005009422) #35	HARBI1 (ENSCDRG00005009768)
Suina	ANCESTRAL SPECIES	34	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Chacoan peccary	MODERN SPECIES	919	NUP160 (ENSCWAG00000007529) #8	FNBP4 (ENSCWAG00000007691) #9	AGBL2 (ENSCWAG00000011756) #10	MTCH2 (ENSCWAG00000011837) #11	ENSCWAG00000011908 #12	FAM180B (ENSCWAG00000011934)	NDUFS3 (ENSCWAG00000011975) #13	KBTBD4 (ENSCWAG00000012134) #14	PTPMT1 (ENSCWAG00000012300) #15	CELF1 (ENSCWAG00000012400) #17	RAPSN (ENSCWAG00000012571) #18	PSMC3 (ENSCWAG00000012918) #19	SLC39A13 (ENSCWAG00000013013) #20	ENSCWAG00000013126	SPI1 (ENSCWAG00000013165) #21	MYBPC3 (ENSCWAG00000013297) #22	MADD (ENSCWAG00000014593) #23	NR1H3 (ENSCWAG00000020217) #24	ACP2 (ENSCWAG00000020271) #25	DDB2 (ENSCWAG00000020312) #26	PACSIN3 (ENSCWAG00000020363) #27	ARFGAP2 (ENSCWAG00000020384) #28	CSTPP1 (ENSCWAG00000020423) #29	ENSCWAG00000020438	LRP4 (ENSCWAG00000020453) #30	CKAP5 (ENSCWAG00000020545) #31	F2 (ENSCWAG00000020586) #32	ZNF408 (ENSCWAG00000020629) #33	ARHGAP1 (ENSCWAG00000020638) #34	ATG13 (ENSCWAG00000020671) #35	HARBI1 (ENSCWAG00000020778)
Pig	MODERN SPECIES	10	PTPRJ (ENSSSCG00000023709) #7	ENSSSCG00000055325	NUP160 (ENSSSCG00000013223) #8	FNBP4 (ENSSSCG00000030610) #9	AGBL2 (ENSSSCG00000040838) #10	ENSSSCG00000013232 #11	C1QTNF4 (ENSSSCG00000013231) #12	FAM180B (ENSSSCG00000013230)	NDUFS3 (ENSSSCG00000032081) #13	KBTBD4 (ENSSSCG00000013227) #14	PTPMT1 (ENSSSCG00000013226) #15	CELF1 (ENSSSCG00000013233) #17	PSMC3 (ENSSSCG00000013239) #19	SLC39A13 (ENSSSCG00000013238) #20	SPI1 (ENSSSCG00000013237) #21	MYBPC3 (ENSSSCG00000013236) #22	MADD (ENSSSCG00000013235) #23	NR1H3 (ENSSSCG00000013241) #24	ACP2 (ENSSSCG00000013242) #25	DDB2 (ENSSSCG00000013243) #26	PACSIN3 (ENSSSCG00000013244) #27	ARFGAP2 (ENSSSCG00000013245) #28	CSTPP1 (ENSSSCG00000013246) #29	LRP4 (ENSSSCG00000013248) #30	CKAP5 (ENSSSCG00000013249) #31	ENSSSCG00000048195	F2 (ENSSSCG00000013252) #32	ZNF408 (ENSSSCG00000023097) #33	ARHGAP1 (ENSSSCG00000013256) #34	ATG13 (ENSSSCG00000013257) #35	HARBI1 (ENSSSCG00000013258)
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Carnivora	ANCESTRAL SPECIES	7	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Caniformia	ANCESTRAL SPECIES	25	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Canidae	ANCESTRAL SPECIES	13	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480.h #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480.h #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.u #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Dog	MODERN SPECIES	9	PTPRJ (ENSCAFG00845018509) #7	NUP160 (ENSCAFG00845019247) #8	FNBP4 (ENSCAFG00845019674) #9	AGBL2 (ENSCAFG00845019987) #10	ENSCAFG00845020290 #11	ENSCAFG00845020371 #12	FAM180B (ENSCAFG00845020398)	ENSCAFG00845020432 #13	KBTBD4 (ENSCAFG00845020495) #14	PTPMT1 (ENSCAFG00845020551) #15	CELF1 (ENSCAFG00845020631) #17	RAPSN (ENSCAFG00845020952) #18	ENSCAFG00845021252 #19	SLC39A13 (ENSCAFG00845021469) #20	SPI1 (ENSCAFG00845021614) #21	MYBPC3 (ENSCAFG00845021902) #22	MADD (ENSCAFG00845023101) #23	NR1H3 (ENSCAFG00845024090) #24	ACP2 (ENSCAFG00845024517) #25	DDB2 (ENSCAFG00845024798) #26	PACSIN3 (ENSCAFG00845025012) #27	ARFGAP2 (ENSCAFG00845025262) #28	CSTPP1 (ENSCAFG00845025843) #29	LRP4 (ENSCAFG00845026118) #30	CKAP5 (ENSCAFG00845026513) #31	F2 (ENSCAFG00845026955) #32	ZNF408 (ENSCAFG00845027019) #33	ARHGAP1 (ENSCAFG00845027069) #34	ATG13 (ENSCAFG00845027292) #35	HARBI1 (ENSCAFG00845027517)	AMBRA1 (ENSCAFG00845027652)
Dingo	MODERN SPECIES	69	PTPRJ (ENSCAFG00020025691) #7	NUP160 (ENSCAFG00020025661) #8	FNBP4 (ENSCAFG00020025585) #9	AGBL2 (ENSCAFG00020025573) #10	MTCH2 (ENSCAFG00020025567) #11	C1QTNF4 (ENSCAFG00020025565) #12	FAM180B (ENSCAFG00020025564)	ENSCAFG00020025563 #13	KBTBD4 (ENSCAFG00020025561) #14	PTPMT1 (ENSCAFG00020025558) #15	CELF1 (ENSCAFG00020025487) #17	RAPSN (ENSCAFG00020025481) #18	ENSCAFG00020025479 #19	SLC39A13 (ENSCAFG00020025475) #20	SPI1 (ENSCAFG00020025473) #21	MYBPC3 (ENSCAFG00020025458) #22	MADD (ENSCAFG00020022385) #23	NR1H3 (ENSCAFG00020022209) #24	ACP2 (ENSCAFG00020022205) #25	DDB2 (ENSCAFG00020022201) #26	PACSIN3 (ENSCAFG00020022195) #27	ARFGAP2 (ENSCAFG00020022191) #28	CSTPP1 (ENSCAFG00020022185) #29	LRP4 (ENSCAFG00020022152) #30	CKAP5 (ENSCAFG00020019305) #31	F2 (ENSCAFG00020019158) #32	ZNF408 (ENSCAFG00020019155) #33	ARHGAP1 (ENSCAFG00020019150) #34	ATG13 (ENSCAFG00020019142) #35	HARBI1 (ENSCAFG00020019139)	AMBRA1 (ENSCAFG00020019116)
Red fox	MODERN SPECIES	49	ENSVVUG00000022712	PTPRJ (ENSVVUG00000022729) #7	NUP160 (ENSVVUG00000023082) #8	FNBP4 (ENSVVUG00000023114) #9	AGBL2 (ENSVVUG00000023154) #10	MTCH2 (ENSVVUG00000023181) #11	KBTBD4 (ENSVVUG00000023426) #14	ENSVVUG00000023430	NDUFS3 (ENSVVUG00000023433) #13	PTPMT1 (ENSVVUG00000023435) #15	CELF1 (ENSVVUG00000023439) #17	RAPSN (ENSVVUG00000023449) #18	PSMC3 (ENSVVUG00000023452) #19	SLC39A13 (ENSVVUG00000023457) #20	SPI1 (ENSVVUG00000023463) #21	MYBPC3 (ENSVVUG00000023562) #22	MADD (ENSVVUG00000025425) #23	NR1H3 (ENSVVUG00000026170) #24	ACP2 (ENSVVUG00000026189) #25	DDB2 (ENSVVUG00000026319) #26	PACSIN3 (ENSVVUG00000026352) #27	ARFGAP2 (ENSVVUG00000026397) #28	CSTPP1 (ENSVVUG00000026503) #29	LRP4 (ENSVVUG00000026554) #30	CKAP5 (ENSVVUG00000026762) #31	F2 (ENSVVUG00000026767) #32	ZNF408 (ENSVVUG00000026805) #33	ARHGAP1 (ENSVVUG00000026807) #34	ATG13 (ENSVVUG00000026821) #35	HARBI1 (ENSVVUG00000026967)	AMBRA1 (ENSVVUG00000026969)
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Ursidae	ANCESTRAL SPECIES	2	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
Ursus	ANCESTRAL SPECIES	85	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00910000148141
American black bear	MODERN SPECIES	6689															SPI1 (ENSUAMG00000014979) #21	MYBPC3 (ENSUAMG00000014924) #22	ENSUAMG00000006744 #23
Polar bear	MODERN SPECIES	229	ENSUMAG00000008651	PTPRJ (ENSUMAG00000008683) #7	NUP160 (ENSUMAG00000008983) #8	FNBP4 (ENSUMAG00000009092) #9	AGBL2 (ENSUMAG00000009098) #10	MTCH2 (ENSUMAG00000009168) #11	FAM180B (ENSUMAG00000009202)	NDUFS3 (ENSUMAG00000009205) #13	KBTBD4 (ENSUMAG00000009210) #14	PTPMT1 (ENSUMAG00000009215) #15	CELF1 (ENSUMAG00000009218) #17	RAPSN (ENSUMAG00000009220) #18	PSMC3 (ENSUMAG00000009232) #19	SLC39A13 (ENSUMAG00000009241) #20	SPI1 (ENSUMAG00000009255) #21	MYBPC3 (ENSUMAG00000009303) #22	MADD (ENSUMAG00000009893) #23	NR1H3 (ENSUMAG00000014293) #24	ACP2 (ENSUMAG00000014297) #25	DDB2 (ENSUMAG00000014299) #26	PACSIN3 (ENSUMAG00000014303) #27	ARFGAP2 (ENSUMAG00000014307) #28	CSTPP1 (ENSUMAG00000014321) #29	LRP4 (ENSUMAG00000014330) #30	CKAP5 (ENSUMAG00000014345) #31	F2 (ENSUMAG00000014382) #32	ZNF408 (ENSUMAG00000014405) #33	ARHGAP1 (ENSUMAG00000014408) #34	ATG13 (ENSUMAG00000014415) #35	HARBI1 (ENSUMAG00000014427)	AMBRA1 (ENSUMAG00000014438)
Giant Panda	MODERN SPECIES	7	ENSAMEG00000018704	NUP160 (ENSAMEG00000005149) #8	FNBP4 (ENSAMEG00000007789) #9	AGBL2 (ENSAMEG00000007763) #10	MTCH2 (ENSAMEG00000007696) #11	ENSAMEG00000007688 #12	FAM180B (ENSAMEG00000007683)	NDUFS3 (ENSAMEG00000007649) #13	KBTBD4 (ENSAMEG00000007634) #14	PTPMT1 (ENSAMEG00000007624) #15	CELF1 (ENSAMEG00000007596) #17	RAPSN (ENSAMEG00000007575) #18	PSMC3 (ENSAMEG00000007538) #19	SLC39A13 (ENSAMEG00000007505) #20	SPI1 (ENSAMEG00000030284) #21	MYBPC3 (ENSAMEG00000007362) #22	MADD (ENSAMEG00000007321) #23	NR1H3 (ENSAMEG00000007298) #24	ACP2 (ENSAMEG00000007273) #25	DDB2 (ENSAMEG00000007255) #26	PACSIN3 (ENSAMEG00000007225) #27	ARFGAP2 (ENSAMEG00000007175) #28	CSTPP1 (ENSAMEG00000007146) #29	LRP4 (ENSAMEG00000007069) #30	CKAP5 (ENSAMEG00000006979) #31	F2 (ENSAMEG00000006910) #32	ZNF408 (ENSAMEG00000006904) #33	ARHGAP1 (ENSAMEG00000006844) #34	ATG13 (ENSAMEG00000006798) #35	HARBI1 (ENSAMEG00000006795)	ENSAMEG00000023608
Mustelinae	ANCESTRAL SPECIES	74	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Ferret	MODERN SPECIES	255	PTPRJ (ENSMPUG00000003626) #7	NUP160 (ENSMPUG00000003687) #8	FNBP4 (ENSMPUG00000003831) #9	AGBL2 (ENSMPUG00000003840) #10	MTCH2 (ENSMPUG00000003852) #11	C1QTNF4 (ENSMPUG00000003861) #12	FAM180B (ENSMPUG00000003869)	NDUFS3 (ENSMPUG00000003880) #13	KBTBD4 (ENSMPUG00000003932) #14	PTPMT1 (ENSMPUG00000003938) #15	CELF1 (ENSMPUG00000003960) #17	RAPSN (ENSMPUG00000003974) #18	SLC39A13 (ENSMPUG00000003979) #20	PSMC3 (ENSMPUG00000003992) #19	SPI1 (ENSMPUG00000004125) #21	MYBPC3 (ENSMPUG00000004128) #22	MADD (ENSMPUG00000004775) #23	NR1H3 (ENSMPUG00000004787) #24	ACP2 (ENSMPUG00000004871) #25	DDB2 (ENSMPUG00000004880) #26	PACSIN3 (ENSMPUG00000004892) #27	ARFGAP2 (ENSMPUG00000005012) #28	CSTPP1 (ENSMPUG00000005029) #29	LRP4 (ENSMPUG00000005034) #30	CKAP5 (ENSMPUG00000005279) #31	F2 (ENSMPUG00000005310) #32	ZNF408 (ENSMPUG00000005490) #33	ARHGAP1 (ENSMPUG00000005499) #34	ATG13 (ENSMPUG00000005512) #35	HARBI1 (ENSMPUG00000005540)	AMBRA1 (ENSMPUG00000005552)
American mink	MODERN SPECIES	45	PTPRJ (ENSNVIG00000008832) #7	NUP160 (ENSNVIG00000009292) #8	FNBP4 (ENSNVIG00000009890) #9	AGBL2 (ENSNVIG00000009947) #10	MTCH2 (ENSNVIG00000010063) #11	C1QTNF4 (ENSNVIG00000010108) #12	FAM180B (ENSNVIG00000010117)	NDUFS3 (ENSNVIG00000010127) #13	KBTB4 (ENSNVIG00000010139) #14	PTPMT1 (ENSNVIG00000010173) #15	CELF1 (ENSNVIG00000010227) #17	RAPSN (ENSNVIG00000010353) #18	PSMC3 (ENSNVIG00000010384) #19	SLC39A13 (ENSNVIG00000010448) #20	SPI1 (ENSNVIG00000010511) #21	MYBPC3 (ENSNVIG00000010535) #22	MADD (ENSNVIG00000010799) #23	NR1H3 (ENSNVIG00000011492) #24	ACP2 (ENSNVIG00000011563) #25	DDB2 (ENSNVIG00000011648) #26	PACSIN3 (ENSNVIG00000011680) #27	ARFGAP2 (ENSNVIG00000011708) #28	CK049 (ENSNVIG00000011836) #29	LRP4 (ENSNVIG00000011939) #30	CKAP5 (ENSNVIG00000012011) #31	F2 (ENSNVIG00000012216) #32	ZNF408 (ENSNVIG00000012294) #33	ATG13 (ENSNVIG00000012327) #35	HARB1 (ENSNVIG00000012442)	AMBRA1 (ENSNVIG00000012478)	CHRM4 (ENSNVIG00000012697)
Felidae	ANCESTRAL SPECIES		ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00500000045038.m.a.a	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Panthera	ANCESTRAL SPECIES	13	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00500000045038.m.a.a	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Panthera_a	ANCESTRAL SPECIES	20	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00500000045038.m.a.a	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
leopard	MODERN SPECIES	58	PTPRJ (ENSPPRG00000022122) #7	NUP160 (ENSPPRG00000025052) #8	FNBP4 (ENSPPRG00000024996) #9	AGBL2 (ENSPPRG00000024671) #10	MTCH2 (ENSPPRG00000024284) #11	ENSPPRG00000024156 #12	FAM180B (ENSPPRG00000024070)	NDUFS3 (ENSPPRG00000023580) #13	KBTBD4 (ENSPPRG00000022635) #14	PTPMT1 (ENSPPRG00000000430) #15	CELF1 (ENSPPRG00000002376) #17	RAPSN (ENSPPRG00000004770) #18	PSMC3 (ENSPPRG00000006737) #19	SLC39A13 (ENSPPRG00000009592) #20	SPI1 (ENSPPRG00000010085) #21	MYBPC3 (ENSPPRG00000024064) #22	MADD (ENSPPRG00000000412) #23	NR1H3 (ENSPPRG00000002008) #24	ACP2 (ENSPPRG00000004019) #25	DDB2 (ENSPPRG00000005739) #26	PACSIN3 (ENSPPRG00000005994) #27	ARFGAP2 (ENSPPRG00000007483) #28	CSTPP1 (ENSPPRG00000008841) #29	LRP4 (ENSPPRG00000009649) #30	CKAP5 (ENSPPRG00000014495) #31	F2 (ENSPPRG00000015996) #32	ENSPPRG00000021564	ZNF408 (ENSPPRG00000016866) #33	ARHGAP1 (ENSPPRG00000017517) #34	ATG13 (ENSPPRG00000024435) #35	HARBI1 (ENSPPRG00000024315)
lion	MODERN SPECIES	10	PTPRJ (ENSPLOG00000008520) #7	NUP160 (ENSPLOG00000008133) #8	FNBP4 (ENSPLOG00000008066) #9	AGBL2 (ENSPLOG00000007789) #10	MTCH2 (ENSPLOG00000007733) #11	ENSPLOG00000007716 #12	FAM180B (ENSPLOG00000007697)	NDUFS3 (ENSPLOG00000007679) #13	KBTBD4 (ENSPLOG00000007653) #14	ENSPLOG00000007621	CELF1 (ENSPLOG00000007570) #17	RAPSN (ENSPLOG00000007427) #18	PSMC3 (ENSPLOG00000007292) #19	SLC39A13 (ENSPLOG00000007161) #20	SPI1 (ENSPLOG00000007099) #21	MYBPC3 (ENSPLOG00000006845) #22	MADD (ENSPLOG00000006666) #23	NR1H3 (ENSPLOG00000006535) #24	ACP2 (ENSPLOG00000006391) #25	DDB2 (ENSPLOG00000006264) #26	PACSIN3 (ENSPLOG00000006189) #27	ARFGAP2 (ENSPLOG00000006001) #28	CSTPP1 (ENSPLOG00000005860) #29	LRP4 (ENSPLOG00000005745) #30	CKAP5 (ENSPLOG00000005671) #31	F2 (ENSPLOG00000005576) #32	ENSPLOG00000005532	ZNF408 (ENSPLOG00000005509) #33	ARHGAP1 (ENSPLOG00000005477) #34	ATG13 (ENSPLOG00000005426) #35	HARBI1 (ENSPLOG00000005373)
Tiger	MODERN SPECIES	168	OR4B1 (ENSPTIG00000010088)	PTPRJ (ENSPTIG00000009161) #7	NUP160 (ENSPTIG00000008790) #8	FNBP4 (ENSPTIG00000008430) #9	AGBL2 (ENSPTIG00000007694) #10	MTCH2 (ENSPTIG00000007190) #11	FAM180B (ENSPTIG00000007108)	NDUFS3 (ENSPTIG00000006928) #13	KBTBD4 (ENSPTIG00000006244) #14	PTPMT1 (ENSPTIG00000005838) #15	CELF1 (ENSPTIG00000003974) #17	RAPSN (ENSPTIG00000000869) #18	PSMC3 (ENSPTIG00000021263) #19	SLC39A13 (ENSPTIG00000021132) #20	SPI1 (ENSPTIG00000020982) #21	MYBPC3 (ENSPTIG00000020596) #22	MADD (ENSPTIG00000018995) #23	NR1H3 (ENSPTIG00000018538) #24	ACP2 (ENSPTIG00000018036) #25	DDB2 (ENSPTIG00000017739) #26	PACSIN3 (ENSPTIG00000017528) #27	ARFGAP2 (ENSPTIG00000017136) #28	CSTPP1 (ENSPTIG00000016931) #29	LRP4 (ENSPTIG00000016819) #30	CKAP5 (ENSPTIG00000015717) #31	F2 (ENSPTIG00000015545) #32	ZNF408 (ENSPTIG00000015467) #33	ARHGAP1 (ENSPTIG00000014598) #34	ATG13 (ENSPTIG00000014275) #35	HARBI1 (ENSPTIG00000014054)	AMBRA1 (ENSPTIG00000013363)
Cat	MODERN SPECIES	241	PTPRJ (ENSFCAG00000004667) #7	NUP160 (ENSFCAG00000013806) #8	FNBP4 (ENSFCAG00000013805) #9	AGBL2 (ENSFCAG00000013803) #10	MTCH2 (ENSFCAG00000022906) #11	C1QTNF4 (ENSFCAG00000035523) #12	FAM180B (ENSFCAG00000009508)	NDUFS3 (ENSFCAG00000040734) #13	KBTBD4 (ENSFCAG00000009499) #14	ENSFCAG00000042609	CELF1 (ENSFCAG00000002535) #17	RAPSN (ENSFCAG00000002534) #18	PSMC3 (ENSFCAG00000002533) #19	SLC39A13 (ENSFCAG00000002532) #20	SPI1 (ENSFCAG00000002531) #21	MYBPC3 (ENSFCAG00000002530) #22	MADD (ENSFCAG00000002529) #23	NR1H3 (ENSFCAG00000002528) #24	ACP2 (ENSFCAG00000002527) #25	DDB2 (ENSFCAG00000025016) #26	PACSIN3 (ENSFCAG00000012631) #27	ARFGAP2 (ENSFCAG00000002525) #28	CSTPP1 (ENSFCAG00000002524) #29	LRP4 (ENSFCAG00000002523) #30	CKAP5 (ENSFCAG00000013640) #31	F2 (ENSFCAG00000029088) #32	ENSFCAG00000041074	ZNF408 (ENSFCAG00000029105) #33	ARHGAP1 (ENSFCAG00000013638) #34	ATG13 (ENSFCAG00000013637) #35	HARBI1 (ENSFCAG00000029910)
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Equus	ANCESTRAL SPECIES	56	ENSGT00940000158345.lb	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000158775 #14	ENSGT00940000154479.a	ENSGT00390000017480.e #13	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Donkey	MODERN SPECIES	8	ENSEASG00005011732	PTPRJ (ENSEASG00005011324) #7	NUP160 (ENSEASG00005011017) #8	FNBP4 (ENSEASG00005010995) #9	AGBL2 (ENSEASG00005010911) #10	MTCH2 (ENSEASG00005010837) #11	FAM180B (ENSEASG00005035695)	ENSEASG00005010834 #13	KBTBD4 (ENSEASG00005031390) #14	PTPMT1 (ENSEASG00005037371) #15	CELF1 (ENSEASG00005010831) #17	RAPSN (ENSEASG00005010830) #18	PSMC3 (ENSEASG00005010810) #19	SLC39A13 (ENSEASG00005010790) #20	SPI1 (ENSEASG00005010780) #21	MYBPC3 (ENSEASG00005010750) #22	MADD (ENSEASG00005002251) #23	NR1H3 (ENSEASG00005001479) #24	ACP2 (ENSEASG00005001161) #25	DDB2 (ENSEASG00005001051) #26	PACSIN3 (ENSEASG00005000908) #27	ARFGAP2 (ENSEASG00005000180) #28	CSTPP1 (ENSEASG00005017823) #29	LRP4 (ENSEASG00005017791) #30	CKAP5 (ENSEASG00005015601) #31	F2 (ENSEASG00005015463) #32	ZNF408 (ENSEASG00005015461) #33	ARHGAP1 (ENSEASG00005015450) #34	ATG13 (ENSEASG00005015246) #35	HARBI1 (ENSEASG00005015208)	AMBRA1 (ENSEASG00005015004)
Horse	MODERN SPECIES	3	ENSECAG00000038836 #7	ENSECAG00000040129 #7	ENSECAG00000034219 #7	NUP160 (ENSECAG00000021826) #8	FNBP4 (ENSECAG00000020072) #9	AGBL2 (ENSECAG00000018720) #10	MTCH2 (ENSECAG00000014198) #11	NDUFS3 (ENSECAG00000013454) #13	KBTBD4 (ENSECAG00000013258) #14	PTPMT1 (ENSECAG00000012816) #15	CELF1 (ENSECAG00000007741) #17	RAPSN (ENSECAG00000003289) #18	PSMC3 (ENSECAG00000024786) #19	SLC39A13 (ENSECAG00000024590) #20	SPI1 (ENSECAG00000024457) #21	MYBPC3 (ENSECAG00000024318) #22	MADD (ENSECAG00000016022) #23	NR1H3 (ENSECAG00000015726) #24	ACP2 (ENSECAG00000013128) #25	DDB2 (ENSECAG00000008711) #26	PACSIN3 (ENSECAG00000025103) #27	ARFGAP2 (ENSECAG00000024744) #28	ENSECAG00000051919	CSTPP1 (ENSECAG00000024739) #29	LRP4 (ENSECAG00000023663) #30	CKAP5 (ENSECAG00000015563) #31	F2 (ENSECAG00000011321) #32	ZNF408 (ENSECAG00000010878) #33	ARHGAP1 (ENSECAG00000009844) #34	ATG13 (ENSECAG00000024606) #35	HARBI1 (ENSECAG00000024452)
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065.f #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Megabat	MODERN SPECIES	646						MTCH2 (ENSPVAG00000007348) #11	FAM180B (ENSPVAG00000007346)	NDUFS3 (ENSPVAG00000007344) #13	KBTBD4 (ENSPVAG00000007342) #14	PTPMT1 (ENSPVAG00000007341) #15	CELF1 (ENSPVAG00000007340) #17	RAPSN (ENSPVAG00000007339) #18	PSMC3 (ENSPVAG00000007338) #19	SLC39A13 (ENSPVAG00000007337) #20	SPI1 (ENSPVAG00000007336) #21	MYBPC3 (ENSPVAG00000007332) #22	MADD (ENSPVAG00000007324) #23	NR1H3 (ENSPVAG00000007321) #24	ACP2 (ENSPVAG00000007314) #25	DDB2 (ENSPVAG00000007310) #26
Microchiroptera	ANCESTRAL SPECIES	31	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065.f #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Microbat	MODERN SPECIES	1034	OR4C12 (ENSMLUG00000006753)	OR4C5 (ENSMLUG00000030715)	OR4S1 (ENSMLUG00000009795)	PTPRJ (ENSMLUG00000013225) #7	NUP160 (ENSMLUG00000014062) #8	FNBP4 (ENSMLUG00000011388) #9	MTCH2 (ENSMLUG00000016431) #11	FAM180B (ENSMLUG00000016658)	NDUFS3 (ENSMLUG00000016649) #13	KBTBD4 (ENSMLUG00000006745) #14	ENSMLUG00000024269 #15	CELF1 (ENSMLUG00000016631) #17	ENSMLUG00000016626 #18	PSMC3 (ENSMLUG00000016615) #19	SLC39A13 (ENSMLUG00000016608) #20	MYBPC3 (ENSMLUG00000017650) #22	MADD (ENSMLUG00000017647) #23	NR1H3 (ENSMLUG00000017646) #24	ACP2 (ENSMLUG00000017644) #25	DDB2 (ENSMLUG00000017642) #26	PACSIN3 (ENSMLUG00000017640) #27	ARFGAP2 (ENSMLUG00000017637) #28	CSTPP1 (ENSMLUG00000017636) #29	LRP4 (ENSMLUG00000017635) #30	CKAP5 (ENSMLUG00000017633) #31	F2 (ENSMLUG00000017631) #32	ZNF408 (ENSMLUG00000017629) #33	ARHGAP1 (ENSMLUG00000017628) #34	ATG13 (ENSMLUG00000017626) #35	HARBI1 (ENSMLUG00000011485)	AMBRA1 (ENSMLUG00000009880)
Greater horseshoe bat	MODERN SPECIES	2	FNBP4 (ENSRFEG00010011687) #9	AGBL2 (ENSRFEG00010011739) #10	ENSRFEG00010011838	ENSRFEG00010011881	MTCH2 (ENSRFEG00010011915) #11	ENSRFEG00010011954 #12	FAM180B (ENSRFEG00010011984)	NDUFS3 (ENSRFEG00010012038) #13	KBTBD4 (ENSRFEG00010012114) #14	PTPMT1 (ENSRFEG00010012248) #15	CELF1 (ENSRFEG00010012300) #17	RAPSN (ENSRFEG00010012492) #18	PSMC3 (ENSRFEG00010012635) #19	SLC39A13 (ENSRFEG00010012772) #20	SPI1 (ENSRFEG00010012946) #21	MYBPC3 (ENSRFEG00010013106) #22	MADD (ENSRFEG00010014628) #23	NR1H3 (ENSRFEG00010015025) #24	ACP2 (ENSRFEG00010015250) #25	DDB2 (ENSRFEG00010015496) #26	PACSIN3 (ENSRFEG00010000575) #27	ARFGAP2 (ENSRFEG00010000701) #28	CSTPP1 (ENSRFEG00010000992) #29	LRP4 (ENSRFEG00010001046) #30	CKAP5 (ENSRFEG00010001142) #31	F2 (ENSRFEG00010001400) #32	ZNF408 (ENSRFEG00010001453) #33	ARHGAP1 (ENSRFEG00010001486) #34	ATG13 (ENSRFEG00010001557) #35	HARBI1 (ENSRFEG00010001682)	AMBRA1 (ENSRFEG00010001788)
Atlantogenata	ANCESTRAL SPECIES	13	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Xenarthra	ANCESTRAL SPECIES	19	ENSGT00940000158345	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a
Armadillo	MODERN SPECIES	1506	ENSDNOG00000040753	PTPRJ (ENSDNOG00000010565) #7	NUP160 (ENSDNOG00000043513) #8	FNBP4 (ENSDNOG00000013302) #9	AGBL2 (ENSDNOG00000013277) #10	C1QTNF4 (ENSDNOG00000041468) #12	FAM180B (ENSDNOG00000009566)	NDUFS3 (ENSDNOG00000009548) #13	KBTBD4 (ENSDNOG00000009543) #14	ENSDNOG00000025849 #15	CELF1 (ENSDNOG00000009523) #17	RAPSN (ENSDNOG00000040969) #18	PSMC3 (ENSDNOG00000033470) #19	SLC39A13 (ENSDNOG00000018463) #20	SPI1 (ENSDNOG00000041462) #21	MYBPC3 (ENSDNOG00000042129) #22	MADD (ENSDNOG00000011229) #23	NR1H3 (ENSDNOG00000011206) #24	ACP2 (ENSDNOG00000044310) #25	PACSIN3 (ENSDNOG00000030783) #27	ENSDNOG00000019820 #28	ENSDNOG00000038982	CSTPP1 (ENSDNOG00000019818) #29	LRP4 (ENSDNOG00000019816) #30	CKAP5 (ENSDNOG00000012007) #31	F2 (ENSDNOG00000012528) #32	ZNF408 (ENSDNOG00000047669) #33	ARHGAP1 (ENSDNOG00000017314) #34	ATG13 (ENSDNOG00000002084) #35	HARBI1 (ENSDNOG00000002083)	ENSDNOG00000049497
Afrotheria	ANCESTRAL SPECIES	16	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Tenrec	MODERN SPECIES	5841															ENSETEG00000000432 #21	MYBPC3 (ENSETEG00000000425) #22	MADD (ENSETEG00000000419) #23	NR1H3 (ENSETEG00000000415) #24	ACP2 (ENSETEG00000000413) #25	DDB2 (ENSETEG00000000408) #26
Afrotheria_a	ANCESTRAL SPECIES	17	ENSGT00940000163951	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Hyrax	MODERN SPECIES	3657															SPI1 (ENSPCAG00000016572) #21	MYBPC3 (ENSPCAG00000016433) #22	MADD (ENSPCAG00000016258) #23	NR1H3 (ENSPCAG00000016194) #24	ACP2 (ENSPCAG00000016140) #25	DDB2 (ENSPCAG00000016073) #26	PACSIN3 (ENSPCAG00000015992) #27	ARFGAP2 (ENSPCAG00000015888) #28	CSTPP1 (ENSPCAG00000015812) #29
Elephant	MODERN SPECIES	209	PTPRJ (ENSLAFG00000026310) #7	ENSLAFG00000032365	NUP160 (ENSLAFG00000015258) #8	FNBP4 (ENSLAFG00000015244) #9	AGBL2 (ENSLAFG00000015233) #10	MTCH2 (ENSLAFG00000017949) #11	C1QTNF4 (ENSLAFG00000017947) #12	NDUFS3 (ENSLAFG00000017939) #13	KBTBD4 (ENSLAFG00000017937) #14	PTPMT1 (ENSLAFG00000020874) #15	CELF1 (ENSLAFG00000003484) #17	RAPSN (ENSLAFG00000016010) #18	PSMC3 (ENSLAFG00000032142) #19	SLC39A13 (ENSLAFG00000015999) #20	SPI1 (ENSLAFG00000004062) #21	MYBPC3 (ENSLAFG00000031033) #22	MADD (ENSLAFG00000009270) #23	NR1H3 (ENSLAFG00000009267) #24	ACP2 (ENSLAFG00000025658) #25	DDB2 (ENSLAFG00000009262) #26	PACSIN3 (ENSLAFG00000016193) #27	ARFGAP2 (ENSLAFG00000013742) #28	CSTPP1 (ENSLAFG00000013736) #29	LRP4 (ENSLAFG00000013726) #30	CKAP5 (ENSLAFG00000010386) #31	F2 (ENSLAFG00000010383) #32	ZNF408 (ENSLAFG00000027848) #33	ARHGAP1 (ENSLAFG00000015141) #34	ATG13 (ENSLAFG00000015138) #35	HARBI1 (ENSLAFG00000032359)	ENSLAFG00000015123
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.w.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.w.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a
Diprotodontia	ANCESTRAL SPECIES	46	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.w.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a
Diprotodontia_a	ANCESTRAL SPECIES	46	ENSGT00940000156870 #7	ENSGT00390000000972 #8	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.w.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a
koala	MODERN SPECIES	139	OR4B1 (ENSPCIG00000033399)	PTPRJ (ENSPCIG00000012911) #7	ENSPCIG00000012927 #8	AGBL2 (ENSPCIG00000016171) #10	MTCH2 (ENSPCIG00000016519) #11	ENSPCIG00000016521 #12	ENSPCIG00000037012	NDUFS3 (ENSPCIG00000016526) #13	KBTBD4 (ENSPCIG00000016600) #14	ENSPCIG00000016602 #15	CELF1 (ENSPCIG00000022947) #17	RAPSN (ENSPCIG00000022952) #18	PSMC3 (ENSPCIG00000007254) #19	SLC39A13 (ENSPCIG00000007257) #20	SPI1 (ENSPCIG00000007258) #21	MYBPC3 (ENSPCIG00000007264) #22	MADD (ENSPCIG00000007278) #23	NR1H3 (ENSPCIG00000007281) #24	ACP2 (ENSPCIG00000007284) #25	DDB2 (ENSPCIG00000007289) #26	PACSIN3 (ENSPCIG00000007325) #27	ARFGAP2 (ENSPCIG00000007326) #28	CSTPP1 (ENSPCIG00000007328) #29	LRP4 (ENSPCIG00000007330) #30	CKAP5 (ENSPCIG00000007436) #31	ENSPCIG00000020069	ARHGAP1 (ENSPCIG00000020071) #34	ATG13 (ENSPCIG00000020075) #35	HARBI1 (ENSPCIG00000020090)	AMBRA1 (ENSPCIG00000020093)	CHRM4 (ENSPCIG00000020098)
Common wonbat	MODERN SPECIES	1058	PTPRJ (ENSVURG00010009072) #7	NUP160 (ENSVURG00010009694) #8	FNBP4 (ENSVURG00010009715) #9	AGBL2 (ENSVURG00010009724) #10	MTCH2 (ENSVURG00010009735) #11	ENSVURG00010009744 #12	ENSVURG00010009751	NDUFS3 (ENSVURG00010009759) #13	KBTBD4 (ENSVURG00010009776) #14	ENSVURG00010009789 #15	CELF1 (ENSVURG00010009795) #17	RAPSN (ENSVURG00010009821) #18	ENSVURG00010009856 #19	SLC39A13 (ENSVURG00010009882) #20	SPI1 (ENSVURG00010009914) #21	MYBPC3 (ENSVURG00010009939) #22	MADD (ENSVURG00010010013) #23	NR1H3 (ENSVURG00010010094) #24	ACP2 (ENSVURG00010010120) #25	DDB2 (ENSVURG00010010162) #26	PACSIN3 (ENSVURG00010010192) #27	ARFGAP2 (ENSVURG00010010235) #28	CSTPP1 (ENSVURG00010010291) #29	LRP4 (ENSVURG00010010304) #30	CKAP5 (ENSVURG00010010351) #31	ARHGAP1 (ENSVURG00010010440) #34	ATG13 (ENSVURG00010010461) #35	HARBI1 (ENSVURG00010010503)	AMBRA1 (ENSVURG00010010523)	CHRM4 (ENSVURG00010010600)	MDK (ENSVURG00010010613)
Wallaby	MODERN SPECIES	4022																MYBPC3 (ENSMEUG00000006402) #22
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000023502	NUP160 (ENSSHAG00000017792) #8	FNBP4 (ENSSHAG00000017752) #9	AGBL2 (ENSSHAG00000027609) #10	MTCH2 (ENSSHAG00000017622) #11	C1QTNF4 (ENSSHAG00000030434) #12	ENSSHAG00000026627	NDUFS3 (ENSSHAG00000025275) #13	KBTBD4 (ENSSHAG00000021528) #14	ENSSHAG00000024403 #15	CELF1 (ENSSHAG00000017438) #17	RAPSN (ENSSHAG00000017408) #18	PSMC3 (ENSSHAG00000017393) #19	SLC39A13 (ENSSHAG00000017377) #20	SPI1 (ENSSHAG00000017291) #21	MYBPC3 (ENSSHAG00000017252) #22	NR1H3 (ENSSHAG00000017152) #24	MADD (ENSSHAG00000017189) #23	ACP2 (ENSSHAG00000017126) #25	DDB2 (ENSSHAG00000017108) #26	PACSIN3 (ENSSHAG00000017065) #27	ENSSHAG00000023512 #28	CSTPP1 (ENSSHAG00000032264) #29	LRP4 (ENSSHAG00000016580) #30	CKAP5 (ENSSHAG00000016386) #31	ENSSHAG00000016366	ARHGAP1 (ENSSHAG00000016324) #34	HARBI1 (ENSSHAG00000016218)	ATG13 (ENSSHAG00000016284) #35	AMBRA1 (ENSSHAG00000015742)	ENSSHAG00000030675
Opossum	MODERN SPECIES	4	ENSMODG00000024412	ENSMODG00000019925 #7	NUP160 (ENSMODG00000019923) #8	FNBP4 (ENSMODG00000019921) #9	AGBL2 (ENSMODG00000019920) #10	MTCH2 (ENSMODG00000019919) #11	ENSMODG00000024428	ENSMODG00000019916 #13	KBTBD4 (ENSMODG00000019915) #14	ENSMODG00000019914 #15	CELF1 (ENSMODG00000019913) #17	RAPSN (ENSMODG00000041760) #18	ENSMODG00000019911 #19	SLC39A13 (ENSMODG00000019910) #20	SPI1 (ENSMODG00000019909) #21	MYBPC3 (ENSMODG00000019908) #22	MADD (ENSMODG00000019907) #23	NR1H3 (ENSMODG00000019906) #24	ACP2 (ENSMODG00000019905) #25	ENSMODG00000019904 #26	PACSIN3 (ENSMODG00000019903) #27	ARFGAP2 (ENSMODG00000019901) #28	CSTPP1 (ENSMODG00000019899) #29	ENSMODG00000019900	LRP4 (ENSMODG00000019898) #30	CKAP5 (ENSMODG00000019897) #31	ENSMODG00000019896	ZNF408 (ENSMODG00000019895) #33	ARHGAP1 (ENSMODG00000019894) #34	ATG13 (ENSMODG00000019893) #35	HARBI1 (ENSMODG00000019892)
Platypus	MODERN SPECIES	14	ENSOANG00000007913	PTPRJ (ENSOANG00000007912) #7	NUP160 (ENSOANG00000007911) #8	FNBP4 (ENSOANG00000007909) #9	AGBL2 (ENSOANG00000007906) #10	MTCH2 (ENSOANG00000007903) #11	ENSOANG00000007902 #12	NDUFS3 (ENSOANG00000007900) #13	KBTBD4 (ENSOANG00000007899) #14	ENSOANG00000050504 #15	CELF1 (ENSOANG00000007896) #17	RAPSN (ENSOANG00000007894) #18	PSMC3 (ENSOANG00000040187) #19	SLC39A13 (ENSOANG00000007890) #20	SPI1 (ENSOANG00000050063) #21	MYBPC3 (ENSOANG00000007889) #22	MADD (ENSOANG00000007884) #23	NR1H3 (ENSOANG00000006250) #24	ACP2 (ENSOANG00000048933) #25	DDB2 (ENSOANG00000006247) #26	PACSIN3 (ENSOANG00000004082) #27	ARFGAP2 (ENSOANG00000004083) #28	CSTPP1 (ENSOANG00000031094) #29	LRP4 (ENSOANG00000001954) #30	CKAP5 (ENSOANG00000002765) #31	ENSOANG00000002767	ARHGAP1 (ENSOANG00000002770) #34	ATG13 (ENSOANG00000006550) #35	HARBI1 (ENSOANG00000004814)	AMBRA1 (ENSOANG00000014521)	CHRM4 (ENSOANG00000045540)
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34
Archosauria	ANCESTRAL SPECIES	5	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b.b	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35
Aves	ANCESTRAL SPECIES	2	ENSGT00940000159837	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Anatidae	ANCESTRAL SPECIES	50	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00390000001738
Duck	MODERN SPECIES	23	PRDM11 (ENSAPLG00000006096)	SYT13 (ENSAPLG00000006046)	ENSAPLG00000005604	FUT8 (ENSAPLG00000009017)	ENSAPLG00000024392	C1QTNF4 (ENSAPLG00000000930) #12	FAM180B (ENSAPLG00000018391)	KBTBD4 (ENSAPLG00000008802) #14	NDUFS3 (ENSAPLG00000008862) #13	CELF1 (ENSAPLG00000020823) #17	RAPSN (ENSAPLG00000008323) #18	PSMC3 (ENSAPLG00000008009) #19	ENSAPLG00000002605	SLC39A13 (ENSAPLG00000002504) #20	SPI1 (ENSAPLG00000002423) #21	MYBPC3 (ENSAPLG00000016373) #22	MADD (ENSAPLG00000010515) #23	NR1H3 (ENSAPLG00000010925) #24	ACP2 (ENSAPLG00000011116) #25	VPS51 (ENSAPLG00000023418)	ZFP91 (ENSAPLG00000006822)	CNTF (ENSAPLG00000028898)	DTX4 (ENSAPLG00000019223)	MPEG1 (ENSAPLG00000007201)	BEST1 (ENSAPLG00000007353)	RAB3IL1 (ENSAPLG00000007457)	ENSAPLG00000007497	ENSAPLG00000008364	CSRP3 (ENSAPLG00000008804)	ENSAPLG00000007205	E2F8 (ENSAPLG00000009091)
Pink-footed goose	MODERN SPECIES	39	PRDM11 (ENSABRG00000017655)	SYT13 (ENSABRG00000017650)	ENSABRG00000017633	FUT8 (ENSABRG00000017622)	C1QTNF4 (ENSABRG00000017618) #12	FAM180B (ENSABRG00000017617)	NDUFS3 (ENSABRG00000017605) #13	KBTBD4 (ENSABRG00000017600) #14	PTPMT1 (ENSABRG00000017594) #15	CELF1 (ENSABRG00000017589) #17	RAPSN (ENSABRG00000017555) #18	PSMC3 (ENSABRG00000017537) #19	ENSABRG00000017513	SLC39A13 (ENSABRG00000017506) #20	SPI1 (ENSABRG00000017499) #21	MYBPC3 (ENSABRG00000015621) #22	MADD (ENSABRG00000005509) #23	NR1H3 (ENSABRG00000004173) #24	ACP2 (ENSABRG00000002430) #25	VPS51 (ENSABRG00000002028)	ENSABRG00000001968	ENSABRG00000001880	LRRC55 (ENSABRG00000001850)	APLNR (ENSABRG00000001829)	ENSABRG00000001782	SSRP1 (ENSABRG00000001696)	P2RX3 (ENSABRG00000001629)
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00940000159837.n	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Japanese quail	MODERN SPECIES	23	PRDM11 (ENSCJPG00005010830)	SYT13 (ENSCJPG00005010831)	ENSCJPG00005010832	FUT8 (ENSCJPG00005010835)	C1QTNF4 (ENSCJPG00005010836) #12	FAM180B (ENSCJPG00005010837)	NDUFS3 (ENSCJPG00005010838) #13	KBTBD4 (ENSCJPG00005010839) #14	PTPMT1 (ENSCJPG00005010840) #15	CELF1 (ENSCJPG00005010841) #17	RAPSN (ENSCJPG00005010842) #18	PSMC3 (ENSCJPG00005010843) #19	ENSCJPG00005010844	SLC39A13 (ENSCJPG00005010845) #20	SPI1 (ENSCJPG00005010846) #21	MYBPC3 (ENSCJPG00005010847) #22	ENSCJPG00005011665 #23	ENSCJPG00005011707 #23	NR1H3 (ENSCJPG00005012023) #24	ACP2 (ENSCJPG00005012024) #25	DDB2 (ENSCJPG00005012054) #26	PACSIN3 (ENSCJPG00005012055) #27	ARFGAP2 (ENSCJPG00005012077) #28	CSTPP1 (ENSCJPG00005012079) #29	ENSCJPG00005012080	LRP4 (ENSCJPG00005012083) #30	CKAP5 (ENSCJPG00005012374) #31	ENSCJPG00005013566	ARHGAP1 (ENSCJPG00005013573) #34	ATG13 (ENSCJPG00005013688) #35	HARBI1 (ENSCJPG00005013781)
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00940000159837.n	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a
Chicken	MODERN SPECIES	34	PRDM11 (ENSGALG00010021738)	SYT13 (ENSGALG00010021743)	ASTL (ENSGALG00010021777)	FUT8 (ENSGALG00010021805)	C1QTNF4 (ENSGALG00010021945) #12	FAM180B (ENSGALG00010021988)	KBTBD4 (ENSGALG00010022032) #14	NDUFS3 (ENSGALG00010023836) #13	PTPMT1 (ENSGALG00010022073) #15	CELF1 (ENSGALG00010022161) #17	RAPSN (ENSGALG00010022229) #18	PSMC3 (ENSGALG00010022256) #19	ENSGALG00010022328	SLC39A13 (ENSGALG00010022353) #20	SPI1 (ENSGALG00010022386) #21	MYBPC3 (ENSGALG00010022468) #22	MADD (ENSGALG00010022619) #23	NR1H3 (ENSGALG00010022650) #24	ACP2 (ENSGALG00010022727) #25	DDB2 (ENSGALG00010022792) #26	PACSIN3 (ENSGALG00010022819) #27	ARFGAP2 (ENSGALG00010022838) #28	CSTPP1 (ENSGALG00010022864) #29	LRP4 (ENSGALG00010022929) #30	CKAP5 (ENSGALG00010022971) #31	F2 (ENSGALG00010022987)	ARHGAP1 (ENSGALG00010022997) #34	ATG13 (ENSGALG00010023064) #35	HARBI1 (ENSGALG00010023083)	AMBRA1 (ENSGALG00010023866)	CHRM4 (ENSGALG00010023120)
Turkey	MODERN SPECIES	25	ENSMGAG00000010974 #35	ENSMGAG00000010945 #34	ENSMGAG00000020851 #31	ENSMGAG00000010924	ENSMGAG00000010880 #31	ENSMGAG00000010850 #30	ENSMGAG00000022957	ENSMGAG00000019564	ENSMGAG00000010807 #28	ENSMGAG00000010789 #27	ENSMGAG00000010776 #25	ENSMGAG00000010763 #26	NR1H3 (ENSMGAG00000010751) #24	ENSMGAG00000021766 #23	ENSMGAG00000017760 #23	ENSMGAG00000010695 #22	ENSMGAG00000010682 #21	ENSMGAG00000010673 #20	ENSMGAG00000010651 #19	ENSMGAG00000010671	ENSMGAG00000010605 #18	ENSMGAG00000021247 #17	ENSMGAG00000010629 #17	KBTBD4 (ENSMGAG00000010626) #14	ENSMGAG00000010627 #15	NDUFS3 (ENSMGAG00000010620) #13	C1QTNF4 (ENSMGAG00000022056) #12	ENSMGAG00000022471	ENSMGAG00000010576	ENSMGAG00000010571	ENSMGAG00000010570
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00940000159837	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Great tit	MODERN SPECIES	25	TSPAN18 (ENSPMJG00000000485)	TP53I11 (ENSPMJG00000000505)	PRDM11 (ENSPMJG00000000581)	SYT13 (ENSPMJG00000000628)	FUT8 (ENSPMJG00000000654)	C1QTNF4 (ENSPMJG00000000868) #12	ENSPMJG00000000873	NDUFS3 (ENSPMJG00000000879) #13	KBTBD4 (ENSPMJG00000000885) #14	PTPMT1 (ENSPMJG00000000896) #15	CELF1 (ENSPMJG00000000899) #17	PSMC3 (ENSPMJG00000000915) #19	ENSPMJG00000000920	SLC39A13 (ENSPMJG00000000932) #20	SPI1 (ENSPMJG00000000997) #21	MYBPC3 (ENSPMJG00000001019) #22	MADD (ENSPMJG00000004069) #23	NR1H3 (ENSPMJG00000012279) #24	ACP2 (ENSPMJG00000012280) #25	DDB2 (ENSPMJG00000012286) #26	PACSIN3 (ENSPMJG00000012291) #27	ARFGAP2 (ENSPMJG00000012299) #28	CSTPP1 (ENSPMJG00000012300) #29	ENSPMJG00000012301	LRP4 (ENSPMJG00000012302) #30	CKAP5 (ENSPMJG00000012334) #31	ENSPMJG00000013670	ARHGAP1 (ENSPMJG00000013679) #34	ATG13 (ENSPMJG00000013870) #35	HARBI1 (ENSPMJG00000013871)	AMBRA1 (ENSPMJG00000013872)
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00940000159837	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00940000159837	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000171188	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a
Medium ground finch	MODERN SPECIES	15	TP53I11 (ENSGFOG00000006237)	PRDM11 (ENSGFOG00000006231)	SYT13 (ENSGFOG00000006222)	ENSGFOG00000006183	FUT8 (ENSGFOG00000006169)	C1QTNF4 (ENSGFOG00000006164) #12	ENSGFOG00000006160	NDUFS3 (ENSGFOG00000006152) #13	KBTBD4 (ENSGFOG00000006147) #14	CELF1 (ENSGFOG00000006114) #17	RAPSN (ENSGFOG00000006104) #18	PSMC3 (ENSGFOG00000006090) #19	ENSGFOG00000006082	SLC39A13 (ENSGFOG00000006071) #20	SPI1 (ENSGFOG00000006067) #21	MYBPC3 (ENSGFOG00000005710) #22	MADD (ENSGFOG00000005599) #23	NR1H3 (ENSGFOG00000005580) #24	ACP2 (ENSGFOG00000005529) #25	DDB2 (ENSGFOG00000005508) #26	PACSIN3 (ENSGFOG00000005468) #27	ARFGAP2 (ENSGFOG00000005441) #28	CSTPP1 (ENSGFOG00000005426) #29	LRP4 (ENSGFOG00000005261) #30	CKAP5 (ENSGFOG00000005139) #31	ENSGFOG00000005094	ARHGAP1 (ENSGFOG00000005074) #34	ATG13 (ENSGFOG00000005043) #35	HARBI1 (ENSGFOG00000005030)	AMBRA1 (ENSGFOG00000005019)	CHRM4 (ENSGFOG00000005010)
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00940000159837	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000171188	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a
Zebra finch	MODERN SPECIES	27	TSPAN18 (ENSTGUG00000028163)	TP53I11 (ENSTGUG00000019013)	PRDM11 (ENSTGUG00000028029)	SYT13 (ENSTGUG00000027086)	FUT8 (ENSTGUG00000010311)	C1QTNF4 (ENSTGUG00000010341) #12	ENSTGUG00000019362	NDUFS3 (ENSTGUG00000010343) #13	KBTBD4 (ENSTGUG00000010361) #14	PTPMT1 (ENSTGUG00000010369) #15	CELF1 (ENSTGUG00000010377) #17	RAPSN (ENSTGUG00000010400) #18	PSMC3 (ENSTGUG00000028944) #19	SLC39A13 (ENSTGUG00000010418) #20	SPI1 (ENSTGUG00000026691) #21	MYBPC3 (ENSTGUG00000010426) #22	MADD (ENSTGUG00000010454) #23	NR1H3 (ENSTGUG00000010475) #24	ACP2 (ENSTGUG00000010486) #25	DDB2 (ENSTGUG00000010493) #26	PACSIN3 (ENSTGUG00000010497) #27	ARFGAP2 (ENSTGUG00000010515) #28	CSTPP1 (ENSTGUG00000010527) #29	LRP4 (ENSTGUG00000010533) #30	CKAP5 (ENSTGUG00000023569) #31	ENSTGUG00000010580	ARHGAP1 (ENSTGUG00000010593) #34	ATG13 (ENSTGUG00000010603) #35	HARBI1 (ENSTGUG00000010627)	AMBRA1 (ENSTGUG00000010628)	CHRM4 (ENSTGUG00000010635)
Common canary	MODERN SPECIES	3	PRDM11 (ENSSCAG00000003474)	SYT13 (ENSSCAG00000003465)	ENSSCAG00000003458	FUT8 (ENSSCAG00000003442)	C1QTNF4 (ENSSCAG00000003436) #12	ENSSCAG00000003433	NDUFS3 (ENSSCAG00000003420) #13	KBTBD4 (ENSSCAG00000003415) #14	PTPMT1 (ENSSCAG00000003409) #15	CELF1 (ENSSCAG00000003397) #17	RAPSN (ENSSCAG00000003388) #18	PSMC3 (ENSSCAG00000003373) #19	ENSSCAG00000003365	SLC39A13 (ENSSCAG00000003352) #20	SPI1 (ENSSCAG00000003345) #21	MYBPC3 (ENSSCAG00000003326) #22	MADD (ENSSCAG00000003307) #23	NR1H3 (ENSSCAG00000003301) #24	ACP2 (ENSSCAG00000003297) #25	DDB2 (ENSSCAG00000003292) #26	PACSIN3 (ENSSCAG00000003283) #27	ARFGAP2 (ENSSCAG00000003185) #28	CSTPP1 (ENSSCAG00000003159) #29	LRP4 (ENSSCAG00000003129) #30	CKAP5 (ENSSCAG00000003039) #31	ENSSCAG00000003007	ARHGAP1 (ENSSCAG00000002990) #34	ATG13 (ENSSCAG00000002981) #35	HARBI1 (ENSSCAG00000002978)	AMBRA1 (ENSSCAG00000002743)	CHRM4 (ENSSCAG00000002686)
Flycatcher	MODERN SPECIES	24	ENSFALG00000028360	SYT13 (ENSFALG00000012266)	ENSFALG00000012241	ENSFALG00000006418	C1QTNF4 (ENSFALG00000006415) #12	FAM180B (ENSFALG00000014206)	KBTBD4 (ENSFALG00000006408) #14	NDUFS3 (ENSFALG00000006411) #13	PTPMT1 (ENSFALG00000006406) #15	CELF1 (ENSFALG00000006402) #17	RAPSN (ENSFALG00000006401) #18	PSMC3 (ENSFALG00000006396) #19	ENSFALG00000028830	SLC39A13 (ENSFALG00000006394) #20	SPI1 (ENSFALG00000024717) #21	MYBPC3 (ENSFALG00000006369) #22	ENSFALG00000006333 #23	ENSFALG00000026717 #23	NR1H3 (ENSFALG00000006313) #24	ACP2 (ENSFALG00000026896) #25	DDB2 (ENSFALG00000025215) #26	PACSIN3 (ENSFALG00000006296) #27	ARFGAP2 (ENSFALG00000006292) #28	CSTPP1 (ENSFALG00000024272) #29	ENSFALG00000025106	LRP4 (ENSFALG00000006286) #30	CKAP5 (ENSFALG00000006282) #31	ENSFALG00000006272	ARHGAP1 (ENSFALG00000006265) #34	ATG13 (ENSFALG00000006261) #35	HARBI1 (ENSFALG00000028036)
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Kakapo	MODERN SPECIES	21	SYT13 (ENSSHBG00005002521)	ENSSHBG00005002560	FUT8 (ENSSHBG00005002608)	ENSSHBG00005002630	C1QTNF4 (ENSSHBG00005002642) #12	ENSSHBG00005002652	NDUFS3 (ENSSHBG00005002665) #13	KBTBD4 (ENSSHBG00005002689) #14	PTPMT1 (ENSSHBG00005002711) #15	CELF1 (ENSSHBG00005002788) #17	RAPSN (ENSSHBG00005002915) #18	PSMC3 (ENSSHBG00005002985) #19	ENSSHBG00005003006	SLC39A13 (ENSSHBG00005003021) #20	SPI1 (ENSSHBG00005003049) #21	MYBPC3 (ENSSHBG00005003084) #22	MADD (ENSSHBG00005003189) #23	NR1H3 (ENSSHBG00005003352) #24	ACP2 (ENSSHBG00005003371) #25	DDB2 (ENSSHBG00005003396) #26	PACSIN3 (ENSSHBG00005003435) #27	ARFGAP2 (ENSSHBG00005003460) #28	CSTPP1 (ENSSHBG00005003475) #29	LRP4 (ENSSHBG00005003580) #30	CKAP5 (ENSSHBG00005003723) #31	ENSSHBG00005003750	ARHGAP1 (ENSSHBG00005003766) #34	ATG13 (ENSSHBG00005003785) #35	HARBI1 (ENSSHBG00005003802)	AMBRA1 (ENSSHBG00005003842)	CHRM4 (ENSSHBG00005003882)
Golden eagle	MODERN SPECIES	11	PRDM11 (ENSACCG00020004687)	SYT13 (ENSACCG00020004674)	ENSACCG00020004664	FUT8 (ENSACCG00020004646)	C1QTNF4 (ENSACCG00020004637) #12	FAM180B (ENSACCG00020004632)	NDUFS3 (ENSACCG00020004622) #13	KBTBD4 (ENSACCG00020004612) #14	PTPMT1 (ENSACCG00020004607) #15	CELF1 (ENSACCG00020004593) #17	RAPSN (ENSACCG00020004581) #18	PSMC3 (ENSACCG00020004570) #19	ENSACCG00020004563	SLC39A13 (ENSACCG00020009305) #20	SPI1 (ENSACCG00020009293) #21	MYBPC3 (ENSACCG00020009268) #22	MADD (ENSACCG00020009078) #23	NR1H3 (ENSACCG00020008972) #24	ACP2 (ENSACCG00020008959) #25	DDB2 (ENSACCG00020008939) #26	PACSIN3 (ENSACCG00020008914) #27	ARFGAP2 (ENSACCG00020008855) #28	CSTPP1 (ENSACCG00020008796) #29	LRP4 (ENSACCG00020008390) #30	CKAP5 (ENSACCG00020007836) #31	ENSACCG00020007794	ZNF408 (ENSACCG00020007780) #33	ARHGAP1 (ENSACCG00020007772) #34	ATG13 (ENSACCG00020007724) #35	HARBI1 (ENSACCG00020007689)	AMBRA1 (ENSACCG00020007670)
African ostrich	MODERN SPECIES	885	PRDM11 (ENSSCUG00000012420)	SYT13 (ENSSCUG00000012417)	ENSSCUG00000012414	ENSSCUG00000017350	FUT8 (ENSSCUG00000017348)	C1QTNF4 (ENSSCUG00000017344) #12	FAM180B (ENSSCUG00000017343)	NDUFS3 (ENSSCUG00000017342) #13	KBTBD4 (ENSSCUG00000017340) #14	CELF1 (ENSSCUG00000017336) #17	RAPSN (ENSSCUG00000017332) #18	PSMC3 (ENSSCUG00000017315) #19	ENSSCUG00000017312	SLC39A13 (ENSSCUG00000017311) #20	SPI1 (ENSSCUG00000017309) #21	MYBPC3 (ENSSCUG00000017219) #22	MADD (ENSSCUG00000017005) #23	NR1H3 (ENSSCUG00000016935) #24	ACP2 (ENSSCUG00000016921) #25	DDB2 (ENSSCUG00000016918) #26	PACSIN3 (ENSSCUG00000016916) #27	ARFGAP2 (ENSSCUG00000016901) #28	CSTPP1 (ENSSCUG00000016889) #29	LRP4 (ENSSCUG00000016879) #30	CKAP5 (ENSSCUG00000016863) #31	ENSSCUG00000016848
Australian saltwater crocodile	MODERN SPECIES	64	PALS1 (ENSCPRG00005017511)	ENSCPRG00005017503	GPHN (ENSCPRG00005017468)	ENSCPRG00005017457	FUT8 (ENSCPRG00005017454)	C1QTNF4 (ENSCPRG00005017446) #12	FAM180B (ENSCPRG00005017443)	NDUFS3 (ENSCPRG00005017439) #13	KBTBD4 (ENSCPRG00005017435) #14	PTPMT1 (ENSCPRG00005017408) #15	CELF1 (ENSCPRG00005017370) #17	PSMC3 (ENSCPRG00005017298) #19	ENSCPRG00005017284	SLC39A13 (ENSCPRG00005017281) #20	SPI1 (ENSCPRG00005017278) #21	MYBPC3 (ENSCPRG00005017258) #22	MADD (ENSCPRG00005015319) #23	NR1H3 (ENSCPRG00005014870) #24	ACP2 (ENSCPRG00005014864) #25	DDB2 (ENSCPRG00005014860) #26	PACSIN3 (ENSCPRG00005014853) #27	ENSCPRG00005014850	ARFGAP2 (ENSCPRG00005014830) #28	CSTPP1 (ENSCPRG00005014822) #29	LRP4 (ENSCPRG00005014807) #30	CKAP5 (ENSCPRG00005014039) #31	ENSCPRG00005013914	ZNF408 (ENSCPRG00005013908) #33	ARHGAP1 (ENSCPRG00005013849) #34	ATG13 (ENSCPRG00005013813) #35	HARBI1 (ENSCPRG00005013808)
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000156087	ENSGT00940000161537.a	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34
Emydidae	ANCESTRAL SPECIES	2	ENSGT00940000161537.a	ENSGT01070000254525.A	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34
painted turtle	MODERN SPECIES	13	ENSCPBG00000022937	EFNA2 (ENSCPBG00000022934)	FAM174C (ENSCPBG00000022933)	CIRBP (ENSCPBG00000022930)	MIDN (ENSCPBG00000022926)	ATP5F1D (ENSCPBG00000022922)	ENSCPBG00000022921	CBARP (ENSCPBG00000022920)	STK11 (ENSCPBG00000022919)	CELF1 (ENSCPBG00000022914) #17	RAPSN (ENSCPBG00000022911) #18	PSMC3 (ENSCPBG00000022907) #19	ENSCPBG00000022906	SLC39A13 (ENSCPBG00000022904) #20	SPI1 (ENSCPBG00000022901) #21	MYBPC3 (ENSCPBG00000022606) #22	MADD (ENSCPBG00000015642) #23	NR1H3 (ENSCPBG00000015508) #24	ACP2 (ENSCPBG00000015503) #25	DDB2 (ENSCPBG00000015494) #26	PACSIN3 (ENSCPBG00000015488) #27	ENSCPBG00000015485	ENSCPBG00000015483	ARFGAP2 (ENSCPBG00000015479) #28	CSTPP1 (ENSCPBG00000015473) #29	LRP4 (ENSCPBG00000015397) #30	CKAP5 (ENSCPBG00000012821) #31	ENSCPBG00000012688	ZNF408 (ENSCPBG00000012683) #33	ARHGAP1 (ENSCPBG00000012676) #34	ATG13 (ENSCPBG00000012673) #35
Three-toed box turtle	MODERN SPECIES	40	ENSTMTG00000007431	ENSTMTG00000007421	GPHN (ENSTMTG00000002488)	FUT8 (ENSTMTG00000002222)	C1QTNF4 (ENSTMTG00000002213) #12	FAM180B (ENSTMTG00000002205)	NDUFS3 (ENSTMTG00000002201) #13	KBTBD4 (ENSTMTG00000002190) #14	PTPMT1 (ENSTMTG00000002180) #15	CELF1 (ENSTMTG00000002164) #17	RAPSN (ENSTMTG00000002125) #18	PSMC3 (ENSTMTG00000002110) #19	ENSTMTG00000002105	SLC39A13 (ENSTMTG00000002100) #20	SPI1 (ENSTMTG00000002089) #21	MYBPC3 (ENSTMTG00000002067) #22	MADD (ENSTMTG00000001980) #23	NR1H3 (ENSTMTG00000001955) #24	ACP2 (ENSTMTG00000001937) #25	DDB2 (ENSTMTG00000001919) #26	PACSIN3 (ENSTMTG00000001907) #27	ENSTMTG00000001899	ENSTMTG00000001884	ARFGAP2 (ENSTMTG00000001865) #28	CSTPP1 (ENSTMTG00000001857) #29	ENSTMTG00000001848	LRP4 (ENSTMTG00000001223) #30	CKAP5 (ENSTMTG00000000970) #31	ENSTMTG00000000941	ENSTMTG00000000932	ARHGAP1 (ENSTMTG00000000921) #34
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00940000156087	ENSGT00940000161537.a	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000154479.a	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757.g.c #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35
Goode s thornscrub tortoise	MODERN SPECIES	18	PALS1 (ENSGEVG00005017867)	ENSGEVG00005017893	GPHN (ENSGEVG00005018085)	FUT8 (ENSGEVG00005018568)	C1QTNF4 (ENSGEVG00005018589) #12	FAM180B (ENSGEVG00005018619)	ENSGEVG00005018637 #13	KBTBD4 (ENSGEVG00005018662) #14	PTPMT1 (ENSGEVG00005018678) #15	CELF1 (ENSGEVG00005008981) #17	RAPSN (ENSGEVG00005009044) #18	PSMC3 (ENSGEVG00005009237) #19	ENSGEVG00005009277	SLC39A13 (ENSGEVG00005009349) #20	SPI1 (ENSGEVG00005009450) #21	MYBPC3 (ENSGEVG00005009503) #22	MADD (ENSGEVG00005009759) #23	NR1H3 (ENSGEVG00005009930) #24	ACP2 (ENSGEVG00005009970) #25	DDB2 (ENSGEVG00005010017) #26	PACSIN3 (ENSGEVG00005010100) #27	ENSGEVG00005010139	ENSGEVG00005010166	ARFGAP2 (ENSGEVG00005010210) #28	CSTPP1 (ENSGEVG00005010346) #29	LRP4 (ENSGEVG00005010404) #30	CKAP5 (ENSGEVG00005010815) #31	ENSGEVG00005011016	ZNF408 (ENSGEVG00005011280) #33	ARHGAP1 (ENSGEVG00005011311) #34	ATG13 (ENSGEVG00005011349) #35
Abingdon island giant tortoise	MODERN SPECIES	852															SPI1 (ENSCABG00000010435) #21	MYBPC3 (ENSCABG00000010433) #22	MADD (ENSCABG00000001771) #23	NR1H3 (ENSCABG00000001529) #24	ACP2 (ENSCABG00000001524) #25	DDB2 (ENSCABG00000001519) #26	PACSIN3 (ENSCABG00000001512) #27	ENSCABG00000001508	ARFGAP2 (ENSCABG00000001499) #28	CSTPP1 (ENSCABG00000001380) #29
Chinese turtle	MODERN SPECIES	316	GPHN (ENSPSIG00000016624)	ENSPSIG00000000041	ENSPSIG00000000042	FUT8 (ENSPSIG00000003737)	C1QTNF4 (ENSPSIG00000003833) #12	FAM180B (ENSPSIG00000003853)	NDUFS3 (ENSPSIG00000003860) #13	KBTBD4 (ENSPSIG00000003906) #14	PTPMT1 (ENSPSIG00000003911) #15	CELF1 (ENSPSIG00000003922) #17	RAPSN (ENSPSIG00000004089) #18	PSMC3 (ENSPSIG00000004129) #19	ENSPSIG00000004194	SLC39A13 (ENSPSIG00000004231) #20	SPI1 (ENSPSIG00000004344) #21	MYBPC3 (ENSPSIG00000004361) #22
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000171188	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446.bb #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35
Episquamata	ANCESTRAL SPECIES		ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000171188	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446.bb #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000171188	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446.bb #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Common wall lizard	MODERN SPECIES		ENSPMRG00000003786	GPHN (ENSPMRG00000003801)	ENSPMRG00000003843	FUT8 (ENSPMRG00000003850)	C1QTNF4 (ENSPMRG00000003855) #12	ENSPMRG00000003859	NDUFS3 (ENSPMRG00000003864) #13	KBTBD4 (ENSPMRG00000003871) #14	PTPMT1 (ENSPMRG00000003875) #15	CELF1 (ENSPMRG00000003881) #17	PSMC3 (ENSPMRG00000003892) #19	ENSPMRG00000003975	ENSPMRG00000003979	SLC39A13 (ENSPMRG00000003994) #20	SPI1 (ENSPMRG00000004012) #21	MYBPC3 (ENSPMRG00000004475) #22	MADD (ENSPMRG00000008010) #23	NR1H3 (ENSPMRG00000011909) #24	ACP2 (ENSPMRG00000011917) #25	DDB2 (ENSPMRG00000011927) #26	PACSIN3 (ENSPMRG00000011938) #27	ENSPMRG00000011947	ARFGAP2 (ENSPMRG00000011954) #28	CSTPP1 (ENSPMRG00000011967) #29	LRP4 (ENSPMRG00000012004) #30	CKAP5 (ENSPMRG00000012212) #31	ENSPMRG00000012267	ZNF408 (ENSPMRG00000012272) #33	ARHGAP1 (ENSPMRG00000012280) #34	ATG13 (ENSPMRG00000012377) #35	HARBI1 (ENSPMRG00000012436)
Argentine black and white tegu	MODERN SPECIES	3	GPHN (ENSSMRG00000006466)	ENSSMRG00000006386	ENSSMRG00000006378	FUT8 (ENSSMRG00000006374)	C1QTNF4 (ENSSMRG00000006349) #12	ENSSMRG00000006346	NDUFS3 (ENSSMRG00000006342) #13	KBTBD4 (ENSSMRG00000006338) #14	PTPMT1 (ENSSMRG00000006333) #15	CELF1 (ENSSMRG00000006315) #17	RAPSN (ENSSMRG00000006301) #18	PSMC3 (ENSSMRG00000006278) #19	ENSSMRG00000006277	SLC39A13 (ENSSMRG00000006274) #20	SPI1 (ENSSMRG00000006272) #21	MYBPC3 (ENSSMRG00000006219) #22	MADD (ENSSMRG00000006111) #23	NR1H3 (ENSSMRG00000006068) #24	ACP2 (ENSSMRG00000006020) #25	DDB2 (ENSSMRG00000006012) #26	PACSIN3 (ENSSMRG00000006009) #27	ARFGAP2 (ENSSMRG00000006004) #28	CSTPP1 (ENSSMRG00000006000) #29	LRP4 (ENSSMRG00000005929) #30	CKAP5 (ENSSMRG00000005833) #31	ENSSMRG00000005831	ZNF408 (ENSSMRG00000005829) #33	ARHGAP1 (ENSSMRG00000005826) #34	ATG13 (ENSSMRG00000005818) #35	HARBI1 (ENSSMRG00000005723)	AMBRA1 (ENSSMRG00000005709)
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000171188	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446.bb #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000171188	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446.bb #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00930000151062 #33	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Elapidae_a	ANCESTRAL SPECIES	4	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000171188	ENSGT00390000017480.a #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446.bb #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	2874																ENSLLTG00000017109 #22	MADD (ENSLLTG00000017099) #23	NR1H3 (ENSLLTG00000017092) #24
Blue-lipped sea krait	MODERN SPECIES	6873															SPI1 (ENSLLTG00000012910) #21	ENSLLTG00000012888 #22
Acanthophiinae	ANCESTRAL SPECIES	6	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a #12	ENSGT00940000171188	ENSGT00390000017480.a #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446.bb #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a	ENSGT00390000016223
Eastern brown snake	MODERN SPECIES	1	ENSPTXG00000012061	GPHN (ENSPTXG00000012056)	ENSPTXG00000012053	FUT8 (ENSPTXG00000012050)	C1QTNF4 (ENSPTXG00000012048) #12	ENSPTXG00000012047	ENSPTXG00000012045 #13	KBTBD4 (ENSPTXG00000012043) #14	PTPMT1 (ENSPTXG00000012042) #15	CELF1 (ENSPTXG00000012038) #17	RAPSN (ENSPTXG00000012021) #18	PSMC3 (ENSPTXG00000012020) #19	ENSPTXG00000012019	SLC39A13 (ENSPTXG00000012018) #20	SPI1 (ENSPTXG00000012017) #21	MYBPC3 (ENSPTXG00000012012) #22	MADD (ENSPTXG00000011997) #23	NR1H3 (ENSPTXG00000011996) #24	ACP2 (ENSPTXG00000011995) #25	DDB2 (ENSPTXG00000011994) #26	PACSIN3 (ENSPTXG00000011992) #27	ARFGAP2 (ENSPTXG00000011989) #28	CSTPP1 (ENSPTXG00000011967) #29	LRP4 (ENSPTXG00000011966) #30	CKAP5 (ENSPTXG00000011950) #31	ENSPTXG00000011946	ARHGAP1 (ENSPTXG00000011944) #34	ATG13 (ENSPTXG00000011942) #35	HARBI1 (ENSPTXG00000011941)	AMBRA1 (ENSPTXG00000011938)	CHRM4 (ENSPTXG00000011936)
Mainland tiger snake	MODERN SPECIES	36	ENSNSUG00000017704	ENSNSUG00000017705	ENSNSUG00000017706	FUT8 (ENSNSUG00000017707)	C1QTNF4 (ENSNSUG00000017708) #12	ENSNSUG00000017709	NDUFS3 (ENSNSUG00000017710) #13	KBTBD4 (ENSNSUG00000017712) #14	PTPMT1 (ENSNSUG00000017713) #15	CELF1 (ENSNSUG00000017714) #17	RAPSN (ENSNSUG00000017715) #18	PSMC3 (ENSNSUG00000017716) #19	ENSNSUG00000017717	SLC39A13 (ENSNSUG00000017718) #20	SPI1 (ENSNSUG00000017719) #21	MYBPC3 (ENSNSUG00000017720) #22	MADD (ENSNSUG00000017721) #23	NR1H3 (ENSNSUG00000017722) #24	ACP2 (ENSNSUG00000017723) #25	DDB2 (ENSNSUG00000017724) #26	PACSIN3 (ENSNSUG00000017725) #27	ARFGAP2 (ENSNSUG00000017726) #28	CSTPP1 (ENSNSUG00000017812) #29	ENSNSUG00000017813	LRP4 (ENSNSUG00000017814) #30	CKAP5 (ENSNSUG00000017815) #31	ENSNSUG00000017817	ARHGAP1 (ENSNSUG00000017818) #34	ATG13 (ENSNSUG00000017819) #35	HARBI1 (ENSNSUG00000017831)	AMBRA1 (ENSNSUG00000017836)
Indian cobra	MODERN SPECIES		ENSNNAG00000008438	GPHN (ENSNNAG00000008049)	ENSNNAG00000008005	FUT8 (ENSNNAG00000007963)	ENSNNAG00000007935 #12	ENSNNAG00000007916 #12	NDUFS3 (ENSNNAG00000007881) #13	KBTBD4 (ENSNNAG00000007860) #14	PTPMT1 (ENSNNAG00000007839) #15	CELF1 (ENSNNAG00000007686) #17	RAPSN (ENSNNAG00000007663) #18	PSMC3 (ENSNNAG00000007548) #19	ENSNNAG00000007492	SLC39A13 (ENSNNAG00000007477) #20	SPI1 (ENSNNAG00000007464) #21	MYBPC3 (ENSNNAG00000007372) #22	MADD (ENSNNAG00000006994) #23	NR1H3 (ENSNNAG00000006918) #24	ACP2 (ENSNNAG00000006887) #25	DDB2 (ENSNNAG00000006863) #26	PACSIN3 (ENSNNAG00000006783) #27	ARFGAP2 (ENSNNAG00000006716) #28	CSTPP1 (ENSNNAG00000016196) #29	ENSNNAG00000016189	LRP4 (ENSNNAG00000016125) #30	CKAP5 (ENSNNAG00000012822) #31	ENSNNAG00000012596 #33	ENSNNAG00000012433	ARHGAP1 (ENSNNAG00000012386) #34	ATG13 (ENSNNAG00000012104) #35	HARBI1 (ENSNNAG00000012072)
Lizard	MODERN SPECIES		ENSACAG00000043516	ENSACAG00000044894	ENSACAG00000001858	C1QTNF4 (ENSACAG00000037453) #12	ENSACAG00000045049	NDUFS3 (ENSACAG00000001966) #13	KBTBD4 (ENSACAG00000002052) #14	PTPMT1 (ENSACAG00000002085) #15	CELF1 (ENSACAG00000002114) #17	ENSACAG00000037762	RAPSN (ENSACAG00000002242) #18	PSMC3 (ENSACAG00000002289) #19	ENSACAG00000041621	SLC39A13 (ENSACAG00000002440) #20	SPI1 (ENSACAG00000035887) #21	MYBPC3 (ENSACAG00000002510) #22	ENSACAG00000043000	ENSACAG00000042190	MADD (ENSACAG00000002771) #23	NR1H3 (ENSACAG00000002940) #24	ACP2 (ENSACAG00000003028) #25	DDB2 (ENSACAG00000003132) #26	PACSIN3 (ENSACAG00000003162) #27	ENSACAG00000003234	ENSACAG00000040032 #28	ENSACAG00000003243 #28	CSTPP1 (ENSACAG00000003280) #29	LRP4 (ENSACAG00000003321) #30	CKAP5 (ENSACAG00000029651) #31	ENSACAG00000003853	ZNF408 (ENSACAG00000003860) #33
tuatara	MODERN SPECIES	1197							NDUFS3 (ENSSPUG00000004338) #13	KBTBD4 (ENSSPUG00000004313) #14	PTPMT1 (ENSSPUG00000004302) #15	CELF1 (ENSSPUG00000004228) #17	RAPSN (ENSSPUG00000004202) #18	PSMC3 (ENSSPUG00000004135) #19	ENSSPUG00000004090	SLC39A13 (ENSSPUG00000004075) #20	SPI1 (ENSSPUG00000004067) #21	MYBPC3 (ENSSPUG00000004024) #22	MADD (ENSSPUG00000003976) #23	NR1H3 (ENSSPUG00000003960) #24	ACP2 (ENSSPUG00000003932) #25	DDB2 (ENSSPUG00000003915) #26	PACSIN3 (ENSSPUG00000003902) #27	ENSSPUG00000003889	ARFGAP2 (ENSSPUG00000003827) #28	CSTPP1 (ENSSPUG00000003775) #29	LRP4 (ENSSPUG00000003709) #30	CKAP5 (ENSSPUG00000003628) #31	ENSSPUG00000003565	ZNF408 (ENSSPUG00000003559) #33	ARHGAP1 (ENSSPUG00000003553) #34	ATG13 (ENSSPUG00000003280) #35	HARBI1 (ENSSPUG00000003237)
Anura	ANCESTRAL SPECIES	75	ENSGT00390000003450 #9	ENSGT00940000160201 #10	ENSGT00940000154885.C	ENSGT00390000000020.b #11	ENSGT00940000161832.a #12	ENSGT00390000017480 #13	ENSGT00940000158775 #14	ENSGT00390000014065 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT00940000161051.b.g	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00940000165402	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT01030000234629.E.b	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a
Frog	MODERN SPECIES	4	lrrc61 (ENSXETG00000009044) #17	PTPMT1 (ENSXETG00000048327) #15	kbtbd4 (ENSXETG00000027467) #14	ndufs3 (ENSXETG00000019932) #13	ENSXETG00000049085	c1qtnf4 (ENSXETG00000019933) #12	agbl2 (ENSXETG00000019937) #10	fnbp4 (ENSXETG00000040583) #9	ENSXETG00000041614	nup160 (ENSXETG00000007917) #8	ENSXETG00000048500	psmc3 (ENSXETG00000007916) #19	tmem178.2 (ENSXETG00000007915)	slc39a13 (ENSXETG00000007914) #20	spi1 (ENSXETG00000041528) #21	mybpc3 (ENSXETG00000007912) #22	ENSXETG00000040104	madd (ENSXETG00000031749) #23	acp2 (ENSXETG00000003979) #25	ddb2 (ENSXETG00000003980) #26	cat.2 (ENSXETG00000003981)	ENSXETG00000038751	rdm1 (ENSXETG00000030141)	gh2 (ENSXETG00000003984)	lmo2 (ENSXETG00000042510)	caprin1 (ENSXETG00000003985)	nat10 (ENSXETG00000003782)	abtb2 (ENSXETG00000003783)	tfip11 (ENSXETG00000003784)	fbxo3 (ENSXETG00000003785)	ENSXETG00000044678
Leishan spiny toad	MODERN SPECIES	1	ENSLLEG00000025090	MTCH2 (ENSLLEG00000024984) #11	C1QTNF4 (ENSLLEG00000024939) #12	NDUFS3 (ENSLLEG00000024831) #13	KBTBD4 (ENSLLEG00000024539) #14	PTPMT1 (ENSLLEG00000024438) #15	CELF1 (ENSLLEG00000023639) #17	RAPSN (ENSLLEG00000023499) #18	ENSLLEG00000023282	PSMC3 (ENSLLEG00000022403) #19	ENSLLEG00000022209	ENSLLEG00000022137	SLC39A13 (ENSLLEG00000022034) #20	ENSLLEG00000022001	SPI1 (ENSLLEG00000021892) #21	MYBPC3 (ENSLLEG00000015296) #22	MADD (ENSLLEG00000013247) #23	ACP2 (ENSLLEG00000013054) #25	DDB2 (ENSLLEG00000012938) #26	PACSIN3 (ENSLLEG00000012543) #27	ENSLLEG00000012474 #28	ENSLLEG00000012427	CSTPP1 (ENSLLEG00000012343) #29	LRP4 (ENSLLEG00000011330) #30	CKAP5 (ENSLLEG00000009276) #31	ENSLLEG00000008894	ZNF408 (ENSLLEG00000008856) #33	ARHGAP1 (ENSLLEG00000008726) #34	ENSLLEG00000025519	ATG13 (ENSLLEG00000025414) #35	HARBI1 (ENSLLEG00000025377)
Coelacanth	MODERN SPECIES	229	HARBI1 (ENSLACG00000018783)	ATG13 (ENSLACG00000018786) #35	ENSLACG00000018794	ARHGAP1 (ENSLACG00000018798) #34	f2 (ENSLACG00000018806)	znf408 (ENSLACG00000018810) #33	ENSLACG00000018813 #31	ckap5 (ENSLACG00000018814) #31	LRP4 (ENSLACG00000018826) #30	CSTPP1 (ENSLACG00000018885) #29	ENSLACG00000018896	PSMC3 (ENSLACG00000018899) #19	ENSLACG00000018907	SLC39A13 (ENSLACG00000018915) #20	SPI1 (ENSLACG00000018937) #21	MYBPC3 (ENSLACG00000018941) #22	MADD (ENSLACG00000018949) #23	NR1H3 (ENSLACG00000018964) #24	ACP2 (ENSLACG00000018968) #25	PACSIN3 (ENSLACG00000018971) #27	ARFGAP2 (ENSLACG00000018982) #28	ENSLACG00000018983	ENSLACG00000018985	RAPSN (ENSLACG00000018987) #18	CELF1 (ENSLACG00000018990) #17	PTPMT1 (ENSLACG00000018994) #15	KBTBD4 (ENSLACG00000018996) #14	NDUFS3 (ENSLACG00000018998) #13	C1QTNF4 (ENSLACG00000019002) #12	npsn (ENSLACG00000019008)	NUP160 (ENSLACG00000019014) #8