Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00940000154479.a	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37
Glires	ANCESTRAL SPECIES	1	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00940000154479.a	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00940000154479.a	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000155395.e	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000155395.e	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000155395.e	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000164050	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000158345.i #8	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37
Mus	ANCESTRAL SPECIES	1	ENSGT00940000158345.i #8	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025375 #7	MGP_PahariEiJ_G0025376 #8	Ptprj (MGP_PahariEiJ_G0025377) #9	Nup160 (MGP_PahariEiJ_G0025378) #10	Fnbp4 (MGP_PahariEiJ_G0025379) #11	Agbl2 (MGP_PahariEiJ_G0025380) #12	Mtch2 (MGP_PahariEiJ_G0025381) #13	C1qtnf4 (MGP_PahariEiJ_G0025382) #14	Ndufs3 (MGP_PahariEiJ_G0025383) #15	Kbtbd4 (MGP_PahariEiJ_G0025384) #16	Celf1 (MGP_PahariEiJ_G0025385) #17	Rapsn (MGP_PahariEiJ_G0025386) #18	Psmc3 (MGP_PahariEiJ_G0025387) #19	Slc39a13 (MGP_PahariEiJ_G0025388) #20	Spi1 (MGP_PahariEiJ_G0025389) #21	Mybpc3 (MGP_PahariEiJ_G0025390) #22	Madd (MGP_PahariEiJ_G0025391) #23	Nr1h3 (MGP_PahariEiJ_G0025392) #24	Acp2 (MGP_PahariEiJ_G0025393) #25	Ddb2 (MGP_PahariEiJ_G0025394) #26	Pacsin3 (MGP_PahariEiJ_G0025395) #27	Arfgap2 (MGP_PahariEiJ_G0025396) #28	Cstpp1 (MGP_PahariEiJ_G0025397) #29	MGP_PahariEiJ_G0025398 #30	Lrp4 (MGP_PahariEiJ_G0025399) #31	Ckap5 (MGP_PahariEiJ_G0025400) #32	F2 (MGP_PahariEiJ_G0025401) #33	Zfp408 (MGP_PahariEiJ_G0025402) #34	Arhgap1 (MGP_PahariEiJ_G0025403) #35	Atg13 (MGP_PahariEiJ_G0025404) #36	Harbi1 (MGP_PahariEiJ_G0025405) #37
Mus_A	ANCESTRAL SPECIES		ENSGT00940000158345.i #8	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000158345.i.a.a #8	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37
Mus_C	ANCESTRAL SPECIES		ENSGT00940000158345.i.a.a #8	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37
spretus	MODERN SPECIES	11	MGP_SPRETEiJ_G0024850 #8	MGP_SPRETEiJ_G0024849 #8	Ptprj (MGP_SPRETEiJ_G0024851) #9	Nup160 (MGP_SPRETEiJ_G0024852) #10	Fnbp4 (MGP_SPRETEiJ_G0024853) #11	Agbl2 (MGP_SPRETEiJ_G0024854) #12	Mtch2 (MGP_SPRETEiJ_G0024855) #13	C1qtnf4 (MGP_SPRETEiJ_G0024856) #14	Ndufs3 (MGP_SPRETEiJ_G0024857) #15	Kbtbd4 (MGP_SPRETEiJ_G0024858) #16	Celf1 (MGP_SPRETEiJ_G0024859) #17	Rapsn (MGP_SPRETEiJ_G0024860) #18	Psmc3 (MGP_SPRETEiJ_G0024861) #19	Slc39a13 (MGP_SPRETEiJ_G0024862) #20	Spi1 (MGP_SPRETEiJ_G0024863) #21	Mybpc3 (MGP_SPRETEiJ_G0024864) #22	Madd (MGP_SPRETEiJ_G0024865) #23	Nr1h3 (MGP_SPRETEiJ_G0024866) #24	Acp2 (MGP_SPRETEiJ_G0024867) #25	Ddb2 (MGP_SPRETEiJ_G0024868) #26	Pacsin3 (MGP_SPRETEiJ_G0024869) #27	Arfgap2 (MGP_SPRETEiJ_G0024870) #28	Cstpp1 (MGP_SPRETEiJ_G0024871) #29	Lrp4 (MGP_SPRETEiJ_G0024872) #31	Ckap5 (MGP_SPRETEiJ_G0024873) #32	F2 (MGP_SPRETEiJ_G0024874) #33	Zfp408 (MGP_SPRETEiJ_G0024875) #34	Arhgap1 (MGP_SPRETEiJ_G0024876) #35	Atg13 (MGP_SPRETEiJ_G0024877) #36	Harbi1 (MGP_SPRETEiJ_G0024878) #37	Ambra1 (MGP_SPRETEiJ_G0024879)
Steppe mouse	MODERN SPECIES	36	Nup160 (ENSMSIG00000027860) #10	ENSMSIG00000027856	Fnbp4 (ENSMSIG00000027843) #11	Agbl2 (ENSMSIG00000027703) #12	ENSMSIG00000027642 #13	C1qtnf4 (ENSMSIG00000027637) #14	Ndufs3 (ENSMSIG00000027630) #15	Kbtbd4 (ENSMSIG00000027623) #16	ENSMSIG00000027615	Celf1 (ENSMSIG00000027572) #17	ENSMSIG00000027554	Rapsn (ENSMSIG00000027530) #18	Psmc3 (ENSMSIG00000027459) #19	Slc39a13 (ENSMSIG00000027429) #20	Spi1 (ENSMSIG00000027421) #21	Mybpc3 (ENSMSIG00000027308) #22	Madd (ENSMSIG00000021063) #23	Nr1h3 (ENSMSIG00000020950) #24	Acp2 (ENSMSIG00000020936) #25	Ddb2 (ENSMSIG00000020921) #26	Pacsin3 (ENSMSIG00000020892) #27	Arfgap2 (ENSMSIG00000020760) #28	ENSMSIG00000020727 #29	ENSMSIG00000020721	Lrp4 (ENSMSIG00000020667) #31	ENSMSIG00000020658	Ckap5 (ENSMSIG00000020211) #32	F2 (ENSMSIG00000020083) #33	Zfp408 (ENSMSIG00000020068) #34	Arhgap1 (ENSMSIG00000020000) #35	Atg13 (ENSMSIG00000019915) #36
Mouse	MODERN SPECIES	11	Or4x13 (ENSMUSG00000082980) #8	Ptprj (ENSMUSG00000025314) #9	Nup160 (ENSMUSG00000051329) #10	Fnbp4 (ENSMUSG00000008200) #11	Agbl2 (ENSMUSG00000040812) #12	Mtch2 (ENSMUSG00000027282) #13	C1qtnf4 (ENSMUSG00000040794) #14	Ndufs3 (ENSMUSG00000005510) #15	Kbtbd4 (ENSMUSG00000005505) #16	Ptpmt1 (ENSMUSG00000063235)	Celf1 (ENSMUSG00000005506) #17	Rapsn (ENSMUSG00000002104) #18	Psmc3 (ENSMUSG00000002102) #19	Slc39a13 (ENSMUSG00000002105) #20	Spi1 (ENSMUSG00000002111) #21	Mybpc3 (ENSMUSG00000002100) #22	Madd (ENSMUSG00000040687) #23	Nr1h3 (ENSMUSG00000002108) #24	Acp2 (ENSMUSG00000002103) #25	Ddb2 (ENSMUSG00000002109) #26	Pacsin3 (ENSMUSG00000027257) #27	Arfgap2 (ENSMUSG00000027255) #28	Cstpp1 (ENSMUSG00000040591) #29	Lrp4 (ENSMUSG00000027253) #31	Ckap5 (ENSMUSG00000040549) #32	F2 (ENSMUSG00000027249) #33	Zfp408 (ENSMUSG00000075040) #34	Arhgap1 (ENSMUSG00000027247) #35	Atg13 (ENSMUSG00000027244) #36	Harbi1 (ENSMUSG00000027243) #37	Ambra1 (ENSMUSG00000040506)
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0023939 #8	Ptprj (MGP_CAROLIEiJ_G0023940) #9	Nup160 (MGP_CAROLIEiJ_G0023941) #10	Fnbp4 (MGP_CAROLIEiJ_G0023942) #11	Agbl2 (MGP_CAROLIEiJ_G0023943) #12	Mtch2 (MGP_CAROLIEiJ_G0023944) #13	Madd (MGP_CAROLIEiJ_G0023945) #23	C1qtnf4 (MGP_CAROLIEiJ_G0023946) #14	Ndufs3 (MGP_CAROLIEiJ_G0023947) #15	Kbtbd4 (MGP_CAROLIEiJ_G0023948) #16	Celf1 (MGP_CAROLIEiJ_G0023949) #17	Rapsn (MGP_CAROLIEiJ_G0023950) #18	Psmc3 (MGP_CAROLIEiJ_G0023951) #19	Slc39a13 (MGP_CAROLIEiJ_G0023952) #20	Spi1 (MGP_CAROLIEiJ_G0023953) #21	Mybpc3 (MGP_CAROLIEiJ_G0023954) #22	Nr1h3 (MGP_CAROLIEiJ_G0023955) #24	Acp2 (MGP_CAROLIEiJ_G0023956) #25	Ddb2 (MGP_CAROLIEiJ_G0023957) #26	Pacsin3 (MGP_CAROLIEiJ_G0023958) #27	Arfgap2 (MGP_CAROLIEiJ_G0023959) #28	Cstpp1 (MGP_CAROLIEiJ_G0023960) #29	MGP_CAROLIEiJ_G0023961 #30	Lrp4 (MGP_CAROLIEiJ_G0023962) #31	Ckap5 (MGP_CAROLIEiJ_G0023963) #32	F2 (MGP_CAROLIEiJ_G0023964) #33	Zfp408 (MGP_CAROLIEiJ_G0023965) #34	Arhgap1 (MGP_CAROLIEiJ_G0023966) #35	Atg13 (MGP_CAROLIEiJ_G0023967) #36	Harbi1 (MGP_CAROLIEiJ_G0023968) #37	Ambra1 (MGP_CAROLIEiJ_G0023969)
Rat	MODERN SPECIES	13	ENSRNOG00000065949 #8	Ptprj (ENSRNOG00000034025) #9	Nup160 (ENSRNOG00000028215) #10	Fnbp4 (ENSRNOG00000007241) #11	Agbl2 (ENSRNOG00000008467) #12	Mtch2 (ENSRNOG00000058658) #13	C1qtnf4 (ENSRNOG00000069579) #14	Ndufs3 (ENSRNOG00000009155) #15	Kbtbd4 (ENSRNOG00000009397) #16	Ptpmt1 (ENSRNOG00000009723)	Celf1 (ENSRNOG00000010379) #17	Rapsn (ENSRNOG00000011208) #18	Psmc3 (ENSRNOG00000011414) #19	Slc39a13 (ENSRNOG00000011981) #20	Spi1 (ENSRNOG00000012172) #21	Mybpc3 (ENSRNOG00000012307) #22	Madd (ENSRNOG00000012568) #23	Nr1h3 (ENSRNOG00000013172) #24	Acp2 (ENSRNOG00000013594) #25	Ddb2 (ENSRNOG00000014071) #26	Pacsin3 (ENSRNOG00000014204) #27	Arfgap2 (ENSRNOG00000014429) #28	Cstpp1 (ENSRNOG00000014798) #29	Lrp4 (ENSRNOG00000015285) #31	Ckap5 (ENSRNOG00000016067) #32	F2 (ENSRNOG00000016325) #33	ENSRNOG00000070459 #34	Arhgap1 (ENSRNOG00000016610) #35	Atg13 (ENSRNOG00000016984) #36	Ambra1 (ENSRNOG00000017422)	Chrm4 (ENSRNOG00000017556)
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000158345.g #8	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37	ENSGT00390000016223
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000158345.g #8	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37	ENSGT00390000016223
Golden Hamster	MODERN SPECIES	618	ENSMAUG00000008266	ENSMAUG00000006795 #8	Ptprj (ENSMAUG00000011509) #9	Nup160 (ENSMAUG00000009877) #10	Agbl2 (ENSMAUG00000013242) #12	Mtch2 (ENSMAUG00000009619) #13	C1qtnf4 (ENSMAUG00000009128) #14	Ndufs3 (ENSMAUG00000010036) #15	Kbtbd4 (ENSMAUG00000009694) #16	Ptpmt1 (ENSMAUG00000010436)	Celf1 (ENSMAUG00000009468) #17	Rapsn (ENSMAUG00000008690) #18	Psmc3 (ENSMAUG00000007346) #19	ENSMAUG00000009110 #20	Spi1 (ENSMAUG00000008854) #21	Mybpc3 (ENSMAUG00000008229) #22	Madd (ENSMAUG00000009156) #23	Nr1h3 (ENSMAUG00000008657) #24	Acp2 (ENSMAUG00000007767) #25	Ddb2 (ENSMAUG00000010179) #26	Pacsin3 (ENSMAUG00000009572) #27	Arfgap2 (ENSMAUG00000009218) #28	ENSMAUG00000008870	ENSMAUG00000008742	Cstpp1 (ENSMAUG00000008635) #29	Lrp4 (ENSMAUG00000016435) #31	Ckap5 (ENSMAUG00000012944) #32	F2 (ENSMAUG00000009414) #33	Arhgap1 (ENSMAUG00000012048) #35	Atg13 (ENSMAUG00000011052) #36	Harbi1 (ENSMAUG00000012193) #37
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001024110	Ptprj (ENSCGRG00001023856) #9	Nup160 (ENSCGRG00001023375) #10	Fnbp4 (ENSCGRG00001022832) #11	Agbl2 (ENSCGRG00001000549) #12	Mtch2 (ENSCGRG00001024807) #13	C1qtnf4 (ENSCGRG00001007540) #14	Ndufs3 (ENSCGRG00001024136) #15	Kbtbd4 (ENSCGRG00001023919) #16	Ptpmt1 (ENSCGRG00001012152)	Celf1 (ENSCGRG00001011274) #17	Rapsn (ENSCGRG00001009650) #18	Psmc3 (ENSCGRG00001005657) #19	Slc39a13 (ENSCGRG00001003447) #20	Spi1 (ENSCGRG00001009684) #21	Mybpc3 (ENSCGRG00001006702) #22	Madd (ENSCGRG00001024681) #23	Nr1h3 (ENSCGRG00001022656) #24	Acp2 (ENSCGRG00001022138) #25	Ddb2 (ENSCGRG00001012939) #26	Pacsin3 (ENSCGRG00001011840) #27	Arfgap2 (ENSCGRG00001010700) #28	Cstpp1 (ENSCGRG00001020042) #29	Lrp4 (ENSCGRG00001018783) #31	Ckap5 (ENSCGRG00001013368) #32	F2 (ENSCGRG00001023426) #33	Zfp408 (ENSCGRG00001023588) #34	Arhgap1 (ENSCGRG00001023260) #35	ENSCGRG00001022859	Atg13 (ENSCGRG00001022112) #36	Harbi1 (ENSCGRG00001021313) #37
Cricetidae_B	ANCESTRAL SPECIES	34	ENSGT00940000158345.g #8	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37	ENSGT00390000016223
Prairie vole	MODERN SPECIES	81	Ptprj (ENSMOCG00000020009) #9	Nup160 (ENSMOCG00000015911) #10	Fnbp4 (ENSMOCG00000016333) #11	Agbl2 (ENSMOCG00000015547) #12	Mtch2 (ENSMOCG00000001577) #13	C1qtnf4 (ENSMOCG00000013500) #14	Ndufs3 (ENSMOCG00000009375) #15	Kbtbd4 (ENSMOCG00000021780) #16	Ptpmt1 (ENSMOCG00000018913)	Celf1 (ENSMOCG00000012633) #17	Rapsn (ENSMOCG00000012267) #18	Psmc3 (ENSMOCG00000001464) #19	ENSMOCG00000006097 #20	ENSMOCG00000008195 #20	Spi1 (ENSMOCG00000006114) #21	Mybpc3 (ENSMOCG00000008344) #22	Madd (ENSMOCG00000003278) #23	Nr1h3 (ENSMOCG00000010671) #24	Acp2 (ENSMOCG00000002882) #25	Ddb2 (ENSMOCG00000021291) #26	Pacsin3 (ENSMOCG00000022577) #27	Arfgap2 (ENSMOCG00000016700) #28	Cstpp1 (ENSMOCG00000006672) #29	Lrp4 (ENSMOCG00000005823) #31	Ckap5 (ENSMOCG00000022214) #32	F2 (ENSMOCG00000019585) #33	Arhgap1 (ENSMOCG00000008533) #35	Atg13 (ENSMOCG00000018209) #36	ENSMOCG00000007253	Ambra1 (ENSMOCG00000018792)	Chrm4 (ENSMOCG00000016103)
Northern American deer mouse	MODERN SPECIES	17	ENSPEMG00000027548	ENSPEMG00000030020 #8	Ptprj (ENSPEMG00000013280) #9	Nup160 (ENSPEMG00000018101) #10	Fnbp4 (ENSPEMG00000016688) #11	Agbl2 (ENSPEMG00000001437) #12	Mtch2 (ENSPEMG00000010063) #13	C1qtnf4 (ENSPEMG00000024602) #14	Ndufs3 (ENSPEMG00000007248) #15	Kbtbd4 (ENSPEMG00000001992) #16	Ptpmt1 (ENSPEMG00000030250)	Celf1 (ENSPEMG00000015644) #17	Rapsn (ENSPEMG00000016952) #18	Slc39a13 (ENSPEMG00000016290) #20	Spi1 (ENSPEMG00000009647) #21	Mybpc3 (ENSPEMG00000009479) #22	Madd (ENSPEMG00000001264) #23	Nr1h3 (ENSPEMG00000018824) #24	Acp2 (ENSPEMG00000011860) #25	Ddb2 (ENSPEMG00000012899) #26	Pacsin3 (ENSPEMG00000018424) #27	Arfgap2 (ENSPEMG00000009220) #28	Cstpp1 (ENSPEMG00000018931) #29	Lrp4 (ENSPEMG00000015598) #31	Ckap5 (ENSPEMG00000007231) #32	F2 (ENSPEMG00000018118) #33	Zfp408 (ENSPEMG00000016757) #34	Arhgap1 (ENSPEMG00000011370) #35	Atg13 (ENSPEMG00000017021) #36	Harbi1 (ENSPEMG00000013606) #37	ENSPEMG00000025318
Upper Galilee mountains blind mole rat	MODERN SPECIES	1238	Ptprj (ENSNGAG00000019187) #9	Nup160 (ENSNGAG00000011564) #10	Fnbp4 (ENSNGAG00000000488) #11	Agbl2 (ENSNGAG00000000234) #12	Mtch2 (ENSNGAG00000003094) #13	C1qtnf4 (ENSNGAG00000009680) #14	Ndufs3 (ENSNGAG00000012046) #15	Kbtbd4 (ENSNGAG00000000276) #16	Ptpmt1 (ENSNGAG00000017776)	ENSNGAG00000018260	Celf1 (ENSNGAG00000017390) #17	Rapsn (ENSNGAG00000007295) #18	Psmc3 (ENSNGAG00000017843) #19	Slc39a13 (ENSNGAG00000017536) #20	Spi1 (ENSNGAG00000010713) #21	Mybpc3 (ENSNGAG00000000260) #22	Madd (ENSNGAG00000017768) #23	Nr1h3 (ENSNGAG00000015402) #24	Acp2 (ENSNGAG00000007455) #25	Ddb2 (ENSNGAG00000017336) #26	Pacsin3 (ENSNGAG00000014205) #27	Arfgap2 (ENSNGAG00000009124) #28	Cstpp1 (ENSNGAG00000000171) #29	Lrp4 (ENSNGAG00000020436) #31	Ckap5 (ENSNGAG00000001579) #32	F2 (ENSNGAG00000010351) #33	Zfp408 (ENSNGAG00000000309) #34	Arhgap1 (ENSNGAG00000013969) #35	Atg13 (ENSNGAG00000015785) #36	ENSNGAG00000012504
Lesser Egyptian jerboa	MODERN SPECIES	62			Ptprj (ENSJJAG00000012062) #9	Nup160 (ENSJJAG00000020091) #10	Fnbp4 (ENSJJAG00000009203) #11	Agbl2 (ENSJJAG00000022894) #12	Mtch2 (ENSJJAG00000011880) #13	C1qtnf4 (ENSJJAG00000023278) #14	Ndufs3 (ENSJJAG00000023557) #15	Kbtbd4 (ENSJJAG00000020543) #16	Celf1 (ENSJJAG00000020280) #17	Rapsn (ENSJJAG00000020297) #18	Psmc3 (ENSJJAG00000021354) #19	Slc39a13 (ENSJJAG00000007370) #20	Spi1 (ENSJJAG00000019221) #21	Mybpc3 (ENSJJAG00000018706) #22	Madd (ENSJJAG00000015606) #23	Nr1h3 (ENSJJAG00000020697) #24	Acp2 (ENSJJAG00000019515) #25	Ddb2 (ENSJJAG00000016552) #26	Pacsin3 (ENSJJAG00000023252) #27	Arfgap2 (ENSJJAG00000003129) #28	Cstpp1 (ENSJJAG00000008330) #29	Lrp4 (ENSJJAG00000014851) #31	Ckap5 (ENSJJAG00000023265) #32	F2 (ENSJJAG00000005619) #33	Zfp408 (ENSJJAG00000015381) #34	Arhgap1 (ENSJJAG00000022610) #35	Atg13 (ENSJJAG00000024173) #36	ENSJJAG00000015195	ENSJJAG00000016975
Kangaroo rat	MODERN SPECIES	444	Or4c3d (ENSDORG00000000936)	ENSDORG00000024502	Ptprj (ENSDORG00000008291) #9	Nup160 (ENSDORG00000004246) #10	Fnbp4 (ENSDORG00000004245) #11	Agbl2 (ENSDORG00000025903) #12	Mtch2 (ENSDORG00000001511) #13	C1qtnf4 (ENSDORG00000015597) #14	Kbtbd4 (ENSDORG00000015593) #16	Ptpmt1 (ENSDORG00000015591)	Celf1 (ENSDORG00000013721) #17	Rapsn (ENSDORG00000000757) #18	Psmc3 (ENSDORG00000000756) #19	Slc39a13 (ENSDORG00000000753) #20	Spi1 (ENSDORG00000007758) #21	Mybpc3 (ENSDORG00000007751) #22	Madd (ENSDORG00000007749) #23	Nr1h3 (ENSDORG00000007747) #24	Acp2 (ENSDORG00000007743) #25	Ddb2 (ENSDORG00000007741) #26	ENSDORG00000013060 #27	Arfgap2 (ENSDORG00000013057) #28	Cstpp1 (ENSDORG00000013052) #29	Lrp4 (ENSDORG00000001785) #31	Ckap5 (ENSDORG00000011373) #32	F2 (ENSDORG00000029579) #33	Zfp408 (ENSDORG00000000387) #34	Arhgap1 (ENSDORG00000000385) #35	Atg13 (ENSDORG00000000382) #36	ENSDORG00000028941	Ambra1 (ENSDORG00000008382)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00940000154479.a	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37	ENSGT00390000016223
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000155395.e.d	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37	ENSGT00390000016223	ENSGT00940000160394.a
Naked mole-rat female	MODERN SPECIES	14	ENSHGLG00000003580	ENSHGLG00000041936	ENSHGLG00000039374	ENSHGLG00000008506 #9	ENSHGLG00000043784	MTCH2 (ENSHGLG00000017536) #13	FAM180B (ENSHGLG00000038229)	NDUFS3 (ENSHGLG00000018368) #15	KBTBD4 (ENSHGLG00000047234) #16	ENSHGLG00000037048	ENSHGLG00000006909 #17	RAPSN (ENSHGLG00000008521) #18	PSMC3 (ENSHGLG00000005713) #19	SLC39A13 (ENSHGLG00000041087) #20	ENSHGLG00000011456 #21	ENSHGLG00000044290 #22	NR1H3 (ENSHGLG00000014541) #24	ENSHGLG00000036516 #25	DDB2 (ENSHGLG00000018689) #26	ENSHGLG00000040462 #28	CSTPP1 (ENSHGLG00000018725) #29	ARHGAP1 (ENSHGLG00000017685) #35	ENSHGLG00000013428 #36	ENSHGLG00000018447 #37	AMBRA1 (ENSHGLG00000017564)	ENSHGLG00000034290	ENSHGLG00000042531	ENSHGLG00000032476	CREB3L1 (ENSHGLG00000048284)	ENSHGLG00000033741	ENSHGLG00000037709
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000155395.e.c.b	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37	ENSGT00390000016223	ENSGT00940000160394.a
Guinea pig	MODERN SPECIES	72	ENSCPOG00000036627	PTPRJ (ENSCPOG00000000801) #9	NUP160 (ENSCPOG00000005289) #10	FNBP4 (ENSCPOG00000000320) #11	AGBL2 (ENSCPOG00000003935) #12	MTCH2 (ENSCPOG00000006293) #13	C1QTNF4 (ENSCPOG00000023948) #14	NDUFS3 (ENSCPOG00000006141) #15	KBTBD4 (ENSCPOG00000019448) #16	PTPMT1 (ENSCPOG00000031147)	CELF1 (ENSCPOG00000036381) #17	RAPSN (ENSCPOG00000015456) #18	PSMC3 (ENSCPOG00000008176) #19	SLC39A13 (ENSCPOG00000008169) #20	SPI1 (ENSCPOG00000022138) #21	MYBPC3 (ENSCPOG00000013368) #22	MADD (ENSCPOG00000013364) #23	NR1H3 (ENSCPOG00000013362) #24	ACP2 (ENSCPOG00000013359) #25	DDB2 (ENSCPOG00000013358) #26	PACSIN3 (ENSCPOG00000013356) #27	ARFGAP2 (ENSCPOG00000013352) #28	CSTPP1 (ENSCPOG00000020334) #29	LRP4 (ENSCPOG00000007072) #31	CKAP5 (ENSCPOG00000007054) #32	F2 (ENSCPOG00000026682) #33	ARHGAP1 (ENSCPOG00000013046) #35	ATG13 (ENSCPOG00000013042) #36	HARBI1 (ENSCPOG00000037304) #37	AMBRA1 (ENSCPOG00000007341)	CHRM4 (ENSCPOG00000020788)
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000158345 #8	ENSGT00940000155395.e.c.b	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37	ENSGT00390000016223	ENSGT00940000160394.a
Long-tailed chinchilla	MODERN SPECIES	129	ENSCLAG00000012812	ENSCLAG00000013131	ENSCLAG00000012951	PTPRJ (ENSCLAG00000015568) #9	NUP160 (ENSCLAG00000015457) #10	FNBP4 (ENSCLAG00000014534) #11	MTCH2 (ENSCLAG00000012026) #13	C1QTNF4 (ENSCLAG00000015186) #14	NDUFS3 (ENSCLAG00000014873) #15	KBTBD4 (ENSCLAG00000016255) #16	CELF1 (ENSCLAG00000011791) #17	RAPSN (ENSCLAG00000015497) #18	PSMC3 (ENSCLAG00000013916) #19	SLC39A13 (ENSCLAG00000014480) #20	SPI1 (ENSCLAG00000017201) #21	MYBPC3 (ENSCLAG00000015418) #22	MADD (ENSCLAG00000012503) #23	NR1H3 (ENSCLAG00000013563) #24	ACP2 (ENSCLAG00000014608) #25	DDB2 (ENSCLAG00000016473) #26	ENSCLAG00000012709 #27	ARFGAP2 (ENSCLAG00000016467) #28	CSTPP1 (ENSCLAG00000014110) #29	LRP4 (ENSCLAG00000016159) #31	CKAP5 (ENSCLAG00000015801) #32	F2 (ENSCLAG00000015618) #33	ARHGAP1 (ENSCLAG00000013542) #35	ATG13 (ENSCLAG00000015328) #36	HARBI1 (ENSCLAG00000013578) #37	AMBRA1 (ENSCLAG00000015156)	CHRM4 (ENSCLAG00000013251)
Degu	MODERN SPECIES	59	ENSODEG00000016074	ENSODEG00000015266 #8	ENSODEG00000015275	PTPRJ (ENSODEG00000016025) #9	NUP160 (ENSODEG00000015381) #10	FNBP4 (ENSODEG00000016574) #11	AGBL2 (ENSODEG00000016111) #12	MTCH2 (ENSODEG00000015416) #13	NDUFS3 (ENSODEG00000015948) #15	KBTBD4 (ENSODEG00000015830) #16	CELF1 (ENSODEG00000015204) #17	RAPSN (ENSODEG00000015194) #18	ENSODEG00000016550 #19	SLC39A13 (ENSODEG00000015895) #20	SPI1 (ENSODEG00000015369) #21	MYBPC3 (ENSODEG00000016030) #22	MADD (ENSODEG00000017645) #23	NR1H3 (ENSODEG00000016180) #24	ACP2 (ENSODEG00000015528) #25	ENSODEG00000015965 #27	ENSODEG00000016456 #28	CSTPP1 (ENSODEG00000016656) #29	LRP4 (ENSODEG00000015720) #31	CKAP5 (ENSODEG00000016409) #32	F2 (ENSODEG00000016157) #33	ARHGAP1 (ENSODEG00000016156) #35	ATG13 (ENSODEG00000017294) #36	ENSODEG00000016339	AMBRA1 (ENSODEG00000016633)	CHRM4 (ENSODEG00000020352)	MDK (ENSODEG00000015931)
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00940000154479.a	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37	ENSGT00390000016223
Marmotini	ANCESTRAL SPECIES	22	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b.e #13	ENSGT00940000161832.a #14	ENSGT00940000154479.a	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37	ENSGT00390000016223
Marmotini_b	ANCESTRAL SPECIES	23	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b.e #13	ENSGT00940000161832.a #14	ENSGT00940000154479.a	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000154234.b #33	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37	ENSGT00390000016223
Arctic ground squirrel	MODERN SPECIES	208	NUP160 (ENSUPAG00010014170) #10	FNBP4 (ENSUPAG00010014131) #11	AGBL2 (ENSUPAG00010014116) #12	MTCH2 (ENSUPAG00010014096) #13	C1QTNF4 (ENSUPAG00010014090) #14	FAM180B (ENSUPAG00010014076)	NDUFS3 (ENSUPAG00010014067) #15	KBTBD4 (ENSUPAG00010014056) #16	ENSUPAG00010014045	CELF1 (ENSUPAG00010013973) #17	RAPSN (ENSUPAG00010013926) #18	PSMC3 (ENSUPAG00010013908) #19	SLC39A13 (ENSUPAG00010013855) #20	SPI1 (ENSUPAG00010013850) #21	ENSUPAG00010013841	MYBPC3 (ENSUPAG00010013812) #22	MADD (ENSUPAG00010011229) #23	NR1H3 (ENSUPAG00010011188) #24	ACP2 (ENSUPAG00010011162) #25	DDB2 (ENSUPAG00010011149) #26	PACSIN3 (ENSUPAG00010011141) #27	ARFGAP2 (ENSUPAG00010011117) #28	CSTPP1 (ENSUPAG00010011093) #29	LRP4 (ENSUPAG00010011049) #31	CKAP5 (ENSUPAG00010010730) #32	F2 (ENSUPAG00010010714) #33	ZNF408 (ENSUPAG00010010704) #34	ARHGAP1 (ENSUPAG00010010696) #35	ATG13 (ENSUPAG00010010621) #36	HARBI1 (ENSUPAG00010010611) #37	AMBRA1 (ENSUPAG00010010430)
Squirrel	MODERN SPECIES	162	PTPRJ (ENSSTOG00000014795) #9	NUP160 (ENSSTOG00000014125) #10	FNBP4 (ENSSTOG00000014106) #11	AGBL2 (ENSSTOG00000003491) #12	ENSSTOG00000028441 #13	C1QTNF4 (ENSSTOG00000024273) #14	FAM180B (ENSSTOG00000000628)	NDUFS3 (ENSSTOG00000000622) #15	KBTBD4 (ENSSTOG00000020864) #16	PTPMT1 (ENSSTOG00000019770)	CELF1 (ENSSTOG00000000613) #17	RAPSN (ENSSTOG00000011047) #18	PSMC3 (ENSSTOG00000011038) #19	SLC39A13 (ENSSTOG00000027722) #20	SPI1 (ENSSTOG00000022735) #21	MYBPC3 (ENSSTOG00000026473) #22	MADD (ENSSTOG00000007626) #23	NR1H3 (ENSSTOG00000007611) #24	ACP2 (ENSSTOG00000007586) #25	DDB2 (ENSSTOG00000007571) #26	PACSIN3 (ENSSTOG00000007547) #27	ARFGAP2 (ENSSTOG00000007524) #28	CSTPP1 (ENSSTOG00000007512) #29	LRP4 (ENSSTOG00000005236) #31	CKAP5 (ENSSTOG00000005158) #32	F2 (ENSSTOG00000005130) #33	ZNF408 (ENSSTOG00000005114) #34	ARHGAP1 (ENSSTOG00000026557) #35	ATG13 (ENSSTOG00000005077) #36	HARBI1 (ENSSTOG00000005072) #37	AMBRA1 (ENSSTOG00000019411)
Alpin marmot	MODERN SPECIES	3	PTPRJ (ENSMMMG00000016023) #9	NUP160 (ENSMMMG00000015948) #10	FNBP4 (ENSMMMG00000015751) #11	ENSMMMG00000015743	ENSMMMG00000015697 #12	ENSMMMG00000015683 #13	FAM180B (ENSMMMG00000015675)	NDUFS3 (ENSMMMG00000015667) #15	KBTBD4 (ENSMMMG00000015654) #16	ENSMMMG00000015652	CELF1 (ENSMMMG00000015346) #17	RAPSN (ENSMMMG00000015294) #18	PSMC3 (ENSMMMG00000015270) #19	SLC39A13 (ENSMMMG00000015224) #20	SPI1 (ENSMMMG00000015212) #21	MYBPC3 (ENSMMMG00000015189) #22	MADD (ENSMMMG00000014606) #23	NR1H3 (ENSMMMG00000014541) #24	ACP2 (ENSMMMG00000014527) #25	DDB2 (ENSMMMG00000014518) #26	PACSIN3 (ENSMMMG00000014498) #27	ARFGAP2 (ENSMMMG00000014424) #28	CSTPP1 (ENSMMMG00000014382) #29	LRP4 (ENSMMMG00000014335) #31	CKAP5 (ENSMMMG00000013993) #32	F2 (ENSMMMG00000013961) #33	ZNF408 (ENSMMMG00000013944) #34	ARHGAP1 (ENSMMMG00000013934) #35	ATG13 (ENSMMMG00000013875) #36	HARBI1 (ENSMMMG00000013860) #37	AMBRA1 (ENSMMMG00000013284)
Eurasian red squirrel	MODERN SPECIES	2	FNBP4 (ENSSVLG00005008986) #11	AGBL2 (ENSSVLG00005009045) #12	MTCH2 (ENSSVLG00005009232) #13	ENSSVLG00005009265 #14	FAM180B (ENSSVLG00005009289)	NDUFS3 (ENSSVLG00005009316) #15	KBTBD4 (ENSSVLG00005009359) #16	PTPMT1 (ENSSVLG00005009417)	CELF1 (ENSSVLG00005009492) #17	RAPSN (ENSSVLG00005009920) #18	ENSSVLG00005009993 #19	ENSSVLG00005010167 #20	ENSSVLG00005010225 #19	ENSSVLG00005010302 #20	SPI1 (ENSSVLG00005010597) #21	MYBPC3 (ENSSVLG00005010729) #22	MADD (ENSSVLG00005011762) #23	ENSSVLG00005012055	NR1H3 (ENSSVLG00005012159) #24	ACP2 (ENSSVLG00005012397) #25	DDB2 (ENSSVLG00005012634) #26	PACSIN3 (ENSSVLG00005013010) #27	ARFGAP2 (ENSSVLG00005013354) #28	CSTPP1 (ENSSVLG00005013495) #29	LRP4 (ENSSVLG00005013702) #31	CKAP5 (ENSSVLG00005013939) #32	F2 (ENSSVLG00005014116) #33	ARHGAP1 (ENSSVLG00005014685) #35	ENSSVLG00005014869 #36	HARBI1 (ENSSVLG00005015510) #37	AMBRA1 (ENSSVLG00005015569)
Lagomorpha	ANCESTRAL SPECIES	4	ENSGT00940000155395	ENSGT00940000156870 #9	ENSGT00390000000972 #10	ENSGT00390000003450 #11	ENSGT00940000160201 #12	ENSGT00390000000020.b #13	ENSGT00940000161832.a #14	ENSGT00940000154479.a	ENSGT00390000017480 #15	ENSGT00940000158775 #16	ENSGT00390000014065	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #31	ENSGT00390000014757 #32	ENSGT00940000164059	ENSGT00930000151062 #34	ENSGT00940000160630 #35	ENSGT00390000007055 #36	ENSGT00940000154348.c.b.a #37	ENSGT00390000016223
Rabbit	MODERN SPECIES		ENSOCUG00000030076	PTPRJ (ENSOCUG00000001933) #9	NUP160 (ENSOCUG00000017545) #10	FNBP4 (ENSOCUG00000017534) #11	AGBL2 (ENSOCUG00000017524) #12	MTCH2 (ENSOCUG00000006368) #13	C1QTNF4 (ENSOCUG00000006365) #14	FAM180B (ENSOCUG00000006361)	NDUFS3 (ENSOCUG00000006359) #15	KBTBD4 (ENSOCUG00000006353) #16	PTPMT1 (ENSOCUG00000021229)	CELF1 (ENSOCUG00000001311) #17	RAPSN (ENSOCUG00000008892) #18	PSMC3 (ENSOCUG00000026980) #19	SLC39A13 (ENSOCUG00000005557) #20	MYBPC3 (ENSOCUG00000002112) #22	MADD (ENSOCUG00000002099) #23	NR1H3 (ENSOCUG00000002095) #24	ACP2 (ENSOCUG00000013342) #25	DDB2 (ENSOCUG00000002076) #26	PACSIN3 (ENSOCUG00000027715) #27	ENSOCUG00000002073 #28	CSTPP1 (ENSOCUG00000002066) #29	LRP4 (ENSOCUG00000002052) #31	CKAP5 (ENSOCUG00000016200) #32	ZNF408 (ENSOCUG00000010953) #34	ARHGAP1 (ENSOCUG00000016160) #35	ATG13 (ENSOCUG00000016144) #36	HARBI1 (ENSOCUG00000016137) #37	AMBRA1 (ENSOCUG00000016117)	CHRM4 (ENSOCUG00000021064)
Pika	MODERN SPECIES	3586																MYBPC3 (ENSOPRG00000009569) #22	MADD (ENSOPRG00000009509) #23	NR1H3 (ENSOPRG00000009497) #24	ACP2 (ENSOPRG00000009485) #25	DDB2 (ENSOPRG00000009468) #26	PACSIN3 (ENSOPRG00000009451) #27	ARFGAP2 (ENSOPRG00000009432) #28	CSTPP1 (ENSOPRG00000009417) #29	LRP4 (ENSOPRG00000009347) #31	CKAP5 (ENSOPRG00000009287) #32	ENSOPRG00000009249	ZNF408 (ENSOPRG00000009225) #34	ARHGAP1 (ENSOPRG00000009201) #35	ATG13 (ENSOPRG00000009172) #36
Tree shrew	MODERN SPECIES	1561															ENSTBEG00000001919 #21	MYBPC3 (ENSTBEG00000000966) #22	MADD (ENSTBEG00000000554) #23	NR1H3 (ENSTBEG00000000492) #24	ACP2 (ENSTBEG00000000444) #25	DDB2 (ENSTBEG00000000275) #26