Euteleostomi	ANCESTRAL SPECIES	514												ENSGT01020000230346.E #19	ENSGT00390000015299.a.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24
Sarcopterygii	ANCESTRAL SPECIES	381														ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00940000165402
Tetrapoda	ANCESTRAL SPECIES	9	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00940000154885.C	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00940000165402	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT01030000234629.E.b	ENSGT00390000007055 #35
Amniota	ANCESTRAL SPECIES	20	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00940000154885.C	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Mammalia	ANCESTRAL SPECIES	9	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Theria	ANCESTRAL SPECIES	8	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Primates	ANCESTRAL SPECIES		ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Lemuriformes	ANCESTRAL SPECIES	16	ENSGT00940000155395	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Lemuriformes_a	ANCESTRAL SPECIES	75	ENSGT00940000155395	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Coquerels sifaka	MODERN SPECIES	328	ENSPCOG00000013318 #7	PTPRJ (ENSPCOG00000017943) #8	NUP160 (ENSPCOG00000013611) #9	FNBP4 (ENSPCOG00000016107) #10	AGBL2 (ENSPCOG00000020344) #11	MTCH2 (ENSPCOG00000018416) #12	FAM180B (ENSPCOG00000014736) #13	NDUFS3 (ENSPCOG00000012926) #14	KBTBD4 (ENSPCOG00000017241) #15	PTPMT1 (ENSPCOG00000026725) #16	CELF1 (ENSPCOG00000021865) #17	RAPSN (ENSPCOG00000019055) #18	PSMC3 (ENSPCOG00000020878) #19	SLC39A13 (ENSPCOG00000020868) #20	SPI1 (ENSPCOG00000026208) #21	MYBPC3 (ENSPCOG00000018047) #22	MADD (ENSPCOG00000013832) #23	NR1H3 (ENSPCOG00000023831) #24	ACP2 (ENSPCOG00000027729) #25	DDB2 (ENSPCOG00000022207) #26	PACSIN3 (ENSPCOG00000020469) #27	ARFGAP2 (ENSPCOG00000028490) #28	CSTPP1 (ENSPCOG00000013763) #29	LRP4 (ENSPCOG00000028608) #30	CKAP5 (ENSPCOG00000017517) #31	F2 (ENSPCOG00000018345) #32	ZNF408 (ENSPCOG00000028698) #33	ARHGAP1 (ENSPCOG00000020308) #34	ATG13 (ENSPCOG00000023763) #35	HARBI1 (ENSPCOG00000027989) #36	AMBRA1 (ENSPCOG00000028231) #37
Greater bamboo lemur	MODERN SPECIES	1076	PTPRJ (ENSPSMG00000019631) #8	NUP160 (ENSPSMG00000019675) #9	FNBP4 (ENSPSMG00000019761) #10	AGBL2 (ENSPSMG00000019802) #11	ENSPSMG00000019812	ENSPSMG00000019906 #12	FAM180B (ENSPSMG00000019935) #13	NDUFS3 (ENSPSMG00000019959) #14	KBTBD4 (ENSPSMG00000019995) #15	PTPMT1 (ENSPSMG00000020020) #16	CELF1 (ENSPSMG00000020100) #17	RAPSN (ENSPSMG00000020171) #18	PSMC3 (ENSPSMG00000020244) #19	SLC39A13 (ENSPSMG00000020336) #20	SPI1 (ENSPSMG00000020380) #21	MYBPC3 (ENSPSMG00000020533) #22	MADD (ENSPSMG00000021740) #23	NR1H3 (ENSPSMG00000022646) #24	ACP2 (ENSPSMG00000022714) #25	DDB2 (ENSPSMG00000022768) #26	PACSIN3 (ENSPSMG00000022785) #27	ARFGAP2 (ENSPSMG00000022927) #28	CSTPP1 (ENSPSMG00000022997) #29
Mouse lemur	MODERN SPECIES	27	FNBP4 (ENSMICG00000011329) #10	AGBL2 (ENSMICG00000011310) #11	ENSMICG00000034382	ENSMICG00000005314	MTCH2 (ENSMICG00000027810) #12	FAM180B (ENSMICG00000001091) #13	NDUFS3 (ENSMICG00000045989) #14	KBTBD4 (ENSMICG00000001087) #15	PTPMT1 (ENSMICG00000028273) #16	CELF1 (ENSMICG00000045113) #17	ENSMICG00000043341	RAPSN (ENSMICG00000007148) #18	PSMC3 (ENSMICG00000007138) #19	SLC39A13 (ENSMICG00000007125) #20	SPI1 (ENSMICG00000007120) #21	MYBPC3 (ENSMICG00000007096) #22	MADD (ENSMICG00000007074) #23	NR1H3 (ENSMICG00000007066) #24	ACP2 (ENSMICG00000007053) #25	DDB2 (ENSMICG00000007047) #26	PACSIN3 (ENSMICG00000007038) #27	ENSMICG00000007019 #28	CSTPP1 (ENSMICG00000007010) #29	LRP4 (ENSMICG00000006982) #30	CKAP5 (ENSMICG00000006951) #31	F2 (ENSMICG00000006934) #32	ZNF408 (ENSMICG00000045320) #33	ARHGAP1 (ENSMICG00000006918) #34	ATG13 (ENSMICG00000006905) #35	HARBI1 (ENSMICG00000029266) #36	AMBRA1 (ENSMICG00000006891) #37
Bushbaby	MODERN SPECIES	116	NUP160 (ENSOGAG00000007135) #9	FNBP4 (ENSOGAG00000011403) #10	AGBL2 (ENSOGAG00000011402) #11	MTCH2 (ENSOGAG00000011607) #12	C1QTNF4 (ENSOGAG00000025902)	FAM180B (ENSOGAG00000032394) #13	NDUFS3 (ENSOGAG00000011606) #14	ENSOGAG00000030764	KBTBD4 (ENSOGAG00000028799) #15	PTPMT1 (ENSOGAG00000031935) #16	CELF1 (ENSOGAG00000011600) #17	RAPSN (ENSOGAG00000027783) #18	ENSOGAG00000015289 #19	SLC39A13 (ENSOGAG00000012440) #20	SPI1 (ENSOGAG00000012435) #21	MYBPC3 (ENSOGAG00000012425) #22	MADD (ENSOGAG00000012414) #23	NR1H3 (ENSOGAG00000012410) #24	ACP2 (ENSOGAG00000025562) #25	DDB2 (ENSOGAG00000012408) #26	PACSIN3 (ENSOGAG00000012403) #27	ARFGAP2 (ENSOGAG00000012399) #28	ENSOGAG00000026518	CSTPP1 (ENSOGAG00000012396) #29	LRP4 (ENSOGAG00000011979) #30	CKAP5 (ENSOGAG00000004560) #31	F2 (ENSOGAG00000004555) #32	ZNF408 (ENSOGAG00000034080) #33	ARHGAP1 (ENSOGAG00000014288) #34	ATG13 (ENSOGAG00000004547) #35	HARBI1 (ENSOGAG00000004554) #36
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	20	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Pan	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00390000003248.a.b.a.b	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Chimpanzee	MODERN SPECIES	2	PTPRJ (ENSPTRG00000003578) #8	ENSPTRG00000050224	NUP160 (ENSPTRG00000003577) #9	FNBP4 (ENSPTRG00000003575) #10	AGBL2 (ENSPTRG00000003574) #11	MTCH2 (ENSPTRG00000003573) #12	FAM180B (ENSPTRG00000023838) #13	NDUFS3 (ENSPTRG00000003571) #14	KBTBD4 (ENSPTRG00000003570) #15	PTPMT1 (ENSPTRG00000033944) #16	CELF1 (ENSPTRG00000052299) #17	RAPSN (ENSPTRG00000003567) #18	PSMC3 (ENSPTRG00000003565) #19	SLC39A13 (ENSPTRG00000003564) #20	SPI1 (ENSPTRG00000003563) #21	MYBPC3 (ENSPTRG00000003562) #22	MADD (ENSPTRG00000003561) #23	NR1H3 (ENSPTRG00000003560) #24	ACP2 (ENSPTRG00000003559) #25	DDB2 (ENSPTRG00000003558) #26	ENSPTRG00000045675	PACSIN3 (ENSPTRG00000003557) #27	ARFGAP2 (ENSPTRG00000003556) #28	CSTPP1 (ENSPTRG00000003555) #29	LRP4 (ENSPTRG00000003554) #30	CKAP5 (ENSPTRG00000003553) #31	F2 (ENSPTRG00000003552) #32	ZNF408 (ENSPTRG00000003551) #33	ARHGAP1 (ENSPTRG00000003550) #34	ATG13 (ENSPTRG00000003549) #35	HARBI1 (ENSPTRG00000003548) #36
Bonobo	MODERN SPECIES	2	ENSPPAG00000033896	NUP160 (ENSPPAG00000006588) #9	FNBP4 (ENSPPAG00000031454) #10	AGBL2 (ENSPPAG00000006927) #11	MTCH2 (ENSPPAG00000042054) #12	ENSPPAG00000041168	FAM180B (ENSPPAG00000030975) #13	NDUFS3 (ENSPPAG00000031162) #14	KBTBD4 (ENSPPAG00000031866) #15	PTPMT1 (ENSPPAG00000040774) #16	CELF1 (ENSPPAG00000033870) #17	RAPSN (ENSPPAG00000042512) #18	PSMC3 (ENSPPAG00000042401) #19	SLC39A13 (ENSPPAG00000042717) #20	SPI1 (ENSPPAG00000036814) #21	MYBPC3 (ENSPPAG00000030985) #22	MADD (ENSPPAG00000043339) #23	NR1H3 (ENSPPAG00000039033) #24	ACP2 (ENSPPAG00000042373) #25	DDB2 (ENSPPAG00000000958) #26	ENSPPAG00000021284	PACSIN3 (ENSPPAG00000040614) #27	ARFGAP2 (ENSPPAG00000030940) #28	CSTPP1 (ENSPPAG00000040870) #29	LRP4 (ENSPPAG00000043379) #30	CKAP5 (ENSPPAG00000030676) #31	F2 (ENSPPAG00000041509) #32	ZNF408 (ENSPPAG00000034993) #33	ARHGAP1 (ENSPPAG00000027953) #34	ATG13 (ENSPPAG00000042268) #35	HARBI1 (ENSPPAG00000035636) #36
Human	MODERN SPECIES	2	PTPRJ (ENSG00000149177) #8	NUP160 (ENSG00000030066) #9	FNBP4 (ENSG00000109920) #10	AGBL2 (ENSG00000165923) #11	MTCH2 (ENSG00000109919) #12	C1QTNF4 (ENSG00000172247)	FAM180B (ENSG00000196666) #13	KBTBD4 (ENSG00000123444) #15	PTPMT1 (ENSG00000110536) #16	NDUFS3 (ENSG00000213619) #14	CELF1 (ENSG00000149187) #17	RAPSN (ENSG00000165917) #18	PSMC3 (ENSG00000165916) #19	SLC39A13 (ENSG00000165915) #20	SPI1 (ENSG00000066336) #21	MYBPC3 (ENSG00000134571) #22	MADD (ENSG00000110514) #23	NR1H3 (ENSG00000025434) #24	ACP2 (ENSG00000134575) #25	DDB2 (ENSG00000134574) #26	PACSIN3 (ENSG00000165912) #27	ARFGAP2 (ENSG00000149182) #28	CSTPP1 (ENSG00000149179) #29	LRP4 (ENSG00000134569) #30	CKAP5 (ENSG00000175216) #31	F2 (ENSG00000180210) #32	ZNF408 (ENSG00000175213) #33	ARHGAP1 (ENSG00000175220) #34	ATG13 (ENSG00000175224) #35	HARBI1 (ENSG00000180423) #36	AMBRA1 (ENSG00000110497) #37
Gorilla	MODERN SPECIES	2	PTPRJ (ENSGGOG00000014808) #8	ENSGGOG00000038581	NUP160 (ENSGGOG00000000719) #9	FNBP4 (ENSGGOG00000014374) #10	AGBL2 (ENSGGOG00000014354) #11	MTCH2 (ENSGGOG00000008281) #12	FAM180B (ENSGGOG00000014401) #13	NDUFS3 (ENSGGOG00000014393) #14	KBTBD4 (ENSGGOG00000013959) #15	PTPMT1 (ENSGGOG00000013954) #16	CELF1 (ENSGGOG00000004106) #17	RAPSN (ENSGGOG00000007325) #18	PSMC3 (ENSGGOG00000016530) #19	SLC39A13 (ENSGGOG00000016524) #20	SPI1 (ENSGGOG00000006485) #21	MYBPC3 (ENSGGOG00000006471) #22	MADD (ENSGGOG00000008588) #23	NR1H3 (ENSGGOG00000008583) #24	ACP2 (ENSGGOG00000008576) #25	DDB2 (ENSGGOG00000008569) #26	PACSIN3 (ENSGGOG00000008566) #27	ARFGAP2 (ENSGGOG00000008555) #28	CSTPP1 (ENSGGOG00000008547) #29	LRP4 (ENSGGOG00000001024) #30	CKAP5 (ENSGGOG00000006980) #31	F2 (ENSGGOG00000006967) #32	ZNF408 (ENSGGOG00000010152) #33	ARHGAP1 (ENSGGOG00000005697) #34	ATG13 (ENSGGOG00000005689) #35	HARBI1 (ENSGGOG00000004410) #36	AMBRA1 (ENSGGOG00000011880) #37
Orangutan	MODERN SPECIES	2	PTPRJ (ENSPPYG00000040803) #8	NUP160 (ENSPPYG00000003293) #9	FNBP4 (ENSPPYG00000003294) #10	AGBL2 (ENSPPYG00000003295) #11	MTCH2 (ENSPPYG00000003296) #12	ENSPPYG00000038525	FAM180B (ENSPPYG00000040243) #13	NDUFS3 (ENSPPYG00000003299) #14	KBTBD4 (ENSPPYG00000003300) #15	PTPMT1 (ENSPPYG00000003301) #16	CELF1 (ENSPPYG00000003302) #17	RAPSN (ENSPPYG00000003303) #18	PSMC3 (ENSPPYG00000003304) #19	SLC39A13 (ENSPPYG00000003305) #20	SPI1 (ENSPPYG00000003306) #21	MYBPC3 (ENSPPYG00000003307) #22	MADD (ENSPPYG00000003308) #23	NR1H3 (ENSPPYG00000003309) #24	ACP2 (ENSPPYG00000003310) #25	DDB2 (ENSPPYG00000003311) #26	PACSIN3 (ENSPPYG00000003312) #27	ARFGAP2 (ENSPPYG00000003313) #28	CSTPP1 (ENSPPYG00000003314) #29	LRP4 (ENSPPYG00000003315) #30	CKAP5 (ENSPPYG00000003316) #31	F2 (ENSPPYG00000003317) #32	ZNF408 (ENSPPYG00000003318) #33	ARHGAP1 (ENSPPYG00000003319) #34	ATG13 (ENSPPYG00000003320) #35	HARBI1 (ENSPPYG00000003321) #36	AMBRA1 (ENSPPYG00000003322) #37
Gibbon	MODERN SPECIES	5	ENSNLEG00000033967	NUP160 (ENSNLEG00000014735) #9	FNBP4 (ENSNLEG00000014720) #10	AGBL2 (ENSNLEG00000014711) #11	MTCH2 (ENSNLEG00000034575) #12	ENSNLEG00000014694 #13	NDUFS3 (ENSNLEG00000028559) #14	KBTBD4 (ENSNLEG00000014672) #15	PTPMT1 (ENSNLEG00000033815) #16	ENSNLEG00000033020	CELF1 (ENSNLEG00000014638) #17	RAPSN (ENSNLEG00000014627) #18	PSMC3 (ENSNLEG00000014572) #19	ENSNLEG00000014565 #20	SPI1 (ENSNLEG00000014555) #21	ENSNLEG00000014525 #22	MADD (ENSNLEG00000014491) #23	NR1H3 (ENSNLEG00000014458) #24	ACP2 (ENSNLEG00000014425) #25	DDB2 (ENSNLEG00000014385) #26	PACSIN3 (ENSNLEG00000014344) #27	ARFGAP2 (ENSNLEG00000014290) #28	CSTPP1 (ENSNLEG00000014283) #29	LRP4 (ENSNLEG00000014206) #30	CKAP5 (ENSNLEG00000014160) #31	F2 (ENSNLEG00000014150) #32	ZNF408 (ENSNLEG00000014132) #33	ARHGAP1 (ENSNLEG00000014095) #34	ATG13 (ENSNLEG00000014030) #35	HARBI1 (ENSNLEG00000014025) #36	ENSNLEG00000030310
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Cercopithecinae_b	ANCESTRAL SPECIES	27	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718.m #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Cercopithecinae_d	ANCESTRAL SPECIES	61	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718.m #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00910000147892	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Drill	MODERN SPECIES	1384		ENSMLEG00000036492 #9	FNBP4 (ENSMLEG00000041685) #10	AGBL2 (ENSMLEG00000032331) #11	MTCH2 (ENSMLEG00000005996) #12	ENSMLEG00000010056	FAM180B (ENSMLEG00000030769) #13	NDUFS3 (ENSMLEG00000042396) #14	KBTBD4 (ENSMLEG00000028879) #15	PTPMT1 (ENSMLEG00000020293) #16	CELF1 (ENSMLEG00000040834) #17	RAPSN (ENSMLEG00000037859) #18	ENSMLEG00000033056 #19	SLC39A13 (ENSMLEG00000043749) #20	SPI1 (ENSMLEG00000004290) #21	MYBPC3 (ENSMLEG00000028682) #22	MADD (ENSMLEG00000032767) #23	NR1H3 (ENSMLEG00000044270) #24	ACP2 (ENSMLEG00000042774) #25	DDB2 (ENSMLEG00000032535) #26	PACSIN3 (ENSMLEG00000043145) #27	ARFGAP2 (ENSMLEG00000043821) #28	ENSMLEG00000028689	CSTPP1 (ENSMLEG00000040490) #29	LRP4 (ENSMLEG00000043395) #30	CKAP5 (ENSMLEG00000034738) #31	F2 (ENSMLEG00000043758) #32	ZNF408 (ENSMLEG00000044029) #33	ENSMLEG00000042128	ARHGAP1 (ENSMLEG00000031958) #34	ATG13 (ENSMLEG00000027900) #35
Sooty mangabey	MODERN SPECIES	193	ENSCATG00000002890	PTPRJ (ENSCATG00000045242) #8	NUP160 (ENSCATG00000038914) #9	FNBP4 (ENSCATG00000038551) #10	AGBL2 (ENSCATG00000036090) #11	MTCH2 (ENSCATG00000004816) #12	FAM180B (ENSCATG00000042552) #13	NDUFS3 (ENSCATG00000029573) #14	KBTBD4 (ENSCATG00000032867) #15	PTPMT1 (ENSCATG00000033306) #16	CELF1 (ENSCATG00000040143) #17	RAPSN (ENSCATG00000043406) #18	ENSCATG00000020806 #19	SLC39A13 (ENSCATG00000042480) #20	SPI1 (ENSCATG00000041395) #21	MYBPC3 (ENSCATG00000033529) #22	MADD (ENSCATG00000019656) #23	NR1H3 (ENSCATG00000031838) #24	ACP2 (ENSCATG00000039992) #25	DDB2 (ENSCATG00000037043) #26	PACSIN3 (ENSCATG00000044836) #27	ARFGAP2 (ENSCATG00000032091) #28	CSTPP1 (ENSCATG00000034976) #29	LRP4 (ENSCATG00000034844) #30	CKAP5 (ENSCATG00000037509) #31	F2 (ENSCATG00000038182) #32	ZNF408 (ENSCATG00000035814) #33	ENSCATG00000034262	ARHGAP1 (ENSCATG00000043789) #34	ATG13 (ENSCATG00000038547) #35	HARBI1 (ENSCATG00000043376) #36
Olive baboon	MODERN SPECIES	3	PTPRJ (ENSPANG00000019135) #8	NUP160 (ENSPANG00000023008) #9	FNBP4 (ENSPANG00000006036) #10	AGBL2 (ENSPANG00000005171) #11	MTCH2 (ENSPANG00000001893) #12	ENSPANG00000000111	FAM180B (ENSPANG00000000112) #13	NDUFS3 (ENSPANG00000001634) #14	KBTBD4 (ENSPANG00000017205) #15	ENSPANG00000007187	CELF1 (ENSPANG00000021676) #17	RAPSN (ENSPANG00000004124) #18	PSMC3 (ENSPANG00000017381) #19	SLC39A13 (ENSPANG00000013478) #20	SPI1 (ENSPANG00000004468) #21	MYBPC3 (ENSPANG00000016552) #22	DDB2 (ENSPANG00000006542) #26	ACP2 (ENSPANG00000001892) #25	NR1H3 (ENSPANG00000016658) #24	ENSPANG00000018411 #23	PACSIN3 (ENSPANG00000007979) #27	ARFGAP2 (ENSPANG00000016976) #28	CSTPP1 (ENSPANG00000001891) #29	ENSPANG00000030649	ENSPANG00000023598 #30	HARBI1 (ENSPANG00000023007) #36	ATG13 (ENSPANG00000006613) #35	ARHGAP1 (ENSPANG00000012059) #34	ZNF408 (ENSPANG00000032617) #33	F2 (ENSPANG00000016657) #32	CKAP5 (ENSPANG00000013230) #31
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Pig-tailed macaque	MODERN SPECIES	485	ENSMNEG00000001585	PTPRJ (ENSMNEG00000044343) #8	NUP160 (ENSMNEG00000044935) #9	FNBP4 (ENSMNEG00000039382) #10	AGBL2 (ENSMNEG00000028554) #11	MTCH2 (ENSMNEG00000020815) #12	FAM180B (ENSMNEG00000033276) #13	NDUFS3 (ENSMNEG00000030290) #14	KBTBD4 (ENSMNEG00000036394) #15	PTPMT1 (ENSMNEG00000034588) #16	CELF1 (ENSMNEG00000022558) #17	RAPSN (ENSMNEG00000029367) #18	ENSMNEG00000044564 #19	SLC39A13 (ENSMNEG00000040430) #20	SPI1 (ENSMNEG00000027877) #21	MYBPC3 (ENSMNEG00000029406) #22	MADD (ENSMNEG00000030300) #23	NR1H3 (ENSMNEG00000032200) #24	ACP2 (ENSMNEG00000031619) #25	DDB2 (ENSMNEG00000029423) #26	PACSIN3 (ENSMNEG00000041496) #27	ARFGAP2 (ENSMNEG00000042175) #28	CSTPP1 (ENSMNEG00000043208) #29	LRP4 (ENSMNEG00000039196) #30	CKAP5 (ENSMNEG00000045449) #31	F2 (ENSMNEG00000040864) #32	ZNF408 (ENSMNEG00000040215) #33	ARHGAP1 (ENSMNEG00000044079) #34	ATG13 (ENSMNEG00000028546) #35	HARBI1 (ENSMNEG00000039470) #36	AMBRA1 (ENSMNEG00000041218) #37
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Rhesus	MODERN SPECIES	5	NUP160 (ENSMMUG00000010869) #9	FNBP4 (ENSMMUG00000058885) #10	AGBL2 (ENSMMUG00000012881) #11	MTCH2 (ENSMMUG00000043682) #12	C1QTNF4 (ENSMMUG00000004294)	FAM180B (ENSMMUG00000053860) #13	NDUFS3 (ENSMMUG00000045281) #14	PTPMT1 (ENSMMUG00000004286) #16	KBTBD4 (ENSMMUG00000004289) #15	CELF1 (ENSMMUG00000011657) #17	ENSMMUG00000064417	RAPSN (ENSMMUG00000009498) #18	PSMC3 (ENSMMUG00000015611) #19	SLC39A13 (ENSMMUG00000015607) #20	SPI1 (ENSMMUG00000015606) #21	MYBPC3 (ENSMMUG00000015604) #22	MADD (ENSMMUG00000015602) #23	NR1H3 (ENSMMUG00000015598) #24	ACP2 (ENSMMUG00000015597) #25	PACSIN3 (ENSMMUG00000006359) #27	ARFGAP2 (ENSMMUG00000006357) #28	CSTPP1 (ENSMMUG00000006355) #29	LRP4 (ENSMMUG00000013100) #30	CKAP5 (ENSMMUG00000003631) #31	F2 (ENSMMUG00000019674) #32	ZNF408 (ENSMMUG00000063711) #33	ARHGAP1 (ENSMMUG00000007831) #34	ATG13 (ENSMMUG00000019672) #35	HARBI1 (ENSMMUG00000059160) #36	AMBRA1 (ENSMMUG00000011526) #37	CHRM4 (ENSMMUG00000039412)
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000050002	NUP160 (ENSMFAG00000032004) #9	FNBP4 (ENSMFAG00000045406) #10	AGBL2 (ENSMFAG00000043435) #11	MTCH2 (ENSMFAG00000036915) #12	ENSMFAG00000049478	FAM180B (ENSMFAG00000043005) #13	NDUFS3 (ENSMFAG00000031067) #14	PTPMT1 (ENSMFAG00000042995) #16	KBTBD4 (ENSMFAG00000032928) #15	CELF1 (ENSMFAG00000003505) #17	RAPSN (ENSMFAG00000037957) #18	PSMC3 (ENSMFAG00000003854) #19	SLC39A13 (ENSMFAG00000003412) #20	ENSMFAG00000050805	MYBPC3 (ENSMFAG00000041621) #22	MADD (ENSMFAG00000039619) #23	NR1H3 (ENSMFAG00000002014) #24	ACP2 (ENSMFAG00000000393) #25	DDB2 (ENSMFAG00000031723) #26	ENSMFAG00000057633	PACSIN3 (ENSMFAG00000039377) #27	ARFGAP2 (ENSMFAG00000030043) #28	CSTPP1 (ENSMFAG00000038437) #29	LRP4 (ENSMFAG00000003482) #30	CKAP5 (ENSMFAG00000001378) #31	F2 (ENSMFAG00000031977) #32	ZNF408 (ENSMFAG00000036575) #33	ARHGAP1 (ENSMFAG00000036912) #34	ATG13 (ENSMFAG00000038288) #35	HARBI1 (ENSMFAG00000002487) #36
Vervet Monkey	MODERN SPECIES		OR4B1 (ENSCSAG00000019207)	PTPRJ (ENSCSAG00000005879) #8	NUP160 (ENSCSAG00000005866) #9	FNBP4 (ENSCSAG00000005833) #10	AGBL2 (ENSCSAG00000005812) #11	C1QTNF4 (ENSCSAG00000019208)	FAM180B (ENSCSAG00000005805) #13	NDUFS3 (ENSCSAG00000005802) #14	KBTBD4 (ENSCSAG00000005797) #15	PTPMT1 (ENSCSAG00000005789) #16	CELF1 (ENSCSAG00000005786) #17	RAPSN (ENSCSAG00000005780) #18	PSMC3 (ENSCSAG00000005779) #19	SLC39A13 (ENSCSAG00000005760) #20	SPI1 (ENSCSAG00000005757) #21	MYBPC3 (ENSCSAG00000005746) #22	MADD (ENSCSAG00000005705) #23	NR1H3 (ENSCSAG00000005699) #24	ACP2 (ENSCSAG00000005697) #25	DDB2 (ENSCSAG00000005694) #26	PACSIN3 (ENSCSAG00000005693) #27	ARFGAP2 (ENSCSAG00000005691) #28	CSTPP1 (ENSCSAG00000005689) #29	ENSCSAG00000019209	LRP4 (ENSCSAG00000005688) #30	CKAP5 (ENSCSAG00000005686) #31	F2 (ENSCSAG00000005684) #32	ZNF408 (ENSCSAG00000005681) #33	ARHGAP1 (ENSCSAG00000005680) #34	ATG13 (ENSCSAG00000005678) #35	HARBI1 (ENSCSAG00000005676) #36
Rhinopithecus	ANCESTRAL SPECIES	64	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.b.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223.b #37
Golden snub-nosed monkey	MODERN SPECIES	1568	PTPRJ (ENSRROG00000030580) #8	NUP160 (ENSRROG00000008517) #9	FNBP4 (ENSRROG00000018675) #10	AGBL2 (ENSRROG00000038333) #11	MTCH2 (ENSRROG00000044709) #12	ENSRROG00000045763	FAM180B (ENSRROG00000041406) #13	NDUFS3 (ENSRROG00000031411) #14	KBTBD4 (ENSRROG00000043819) #15	PTPMT1 (ENSRROG00000030092) #16	CELF1 (ENSRROG00000032588) #17	RAPSN (ENSRROG00000040174) #18	ENSRROG00000041915 #19	SLC39A13 (ENSRROG00000038485) #20	SPI1 (ENSRROG00000045565) #21	MYBPC3 (ENSRROG00000043489) #22	MADD (ENSRROG00000041291) #23	NR1H3 (ENSRROG00000045605) #24	ACP2 (ENSRROG00000028745) #25	DDB2 (ENSRROG00000045383) #26	PACSIN3 (ENSRROG00000041480) #27	ARFGAP2 (ENSRROG00000030954) #28	CSTPP1 (ENSRROG00000045631) #29	LRP4 (ENSRROG00000039736) #30	CKAP5 (ENSRROG00000039765) #31	F2 (ENSRROG00000038131) #32	ZNF408 (ENSRROG00000033904) #33	ARHGAP1 (ENSRROG00000037876) #34	ATG13 (ENSRROG00000031087) #35	HARBI1 (ENSRROG00000031237) #36	AMBRA1 (ENSRROG00000034630) #37
Black snub-nosed monkey	MODERN SPECIES	2256																MYBPC3 (ENSRBIG00000040693) #22	MADD (ENSRBIG00000041171) #23	NR1H3 (ENSRBIG00000002426) #24	ACP2 (ENSRBIG00000003979) #25	DDB2 (ENSRBIG00000036127) #26	PACSIN3 (ENSRBIG00000027822) #27	ARFGAP2 (ENSRBIG00000041344) #28	CSTPP1 (ENSRBIG00000040070) #29	ENSRBIG00000043694	LRP4 (ENSRBIG00000024580) #30	CKAP5 (ENSRBIG00000044614) #31	F2 (ENSRBIG00000033898) #32	ZNF408 (ENSRBIG00000010662) #33	ARHGAP1 (ENSRBIG00000029818) #34	ENSRBIG00000044190	ATG13 (ENSRBIG00000044753) #35
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568.s #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Cebidae	ANCESTRAL SPECIES		ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568.s #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Cebidae_a	ANCESTRAL SPECIES	10	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.s.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568.s.a #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Bolivian squirrel monkey	MODERN SPECIES	42	PTPRJ (ENSSBOG00000011214) #8	NUP160 (ENSSBOG00000005640) #9	FNBP4 (ENSSBOG00000027946) #10	AGBL2 (ENSSBOG00000023063) #11	MTCH2 (ENSSBOG00000027552) #12	C1QTNF4 (ENSSBOG00000033834)	FAM180B (ENSSBOG00000029352) #13	ENSSBOG00000001386 #14	KBTBD4 (ENSSBOG00000030700) #15	ENSSBOG00000025269	CELF1 (ENSSBOG00000021912) #17	RAPSN (ENSSBOG00000022262) #18	ENSSBOG00000006227 #19	SLC39A13 (ENSSBOG00000010603) #20	SPI1 (ENSSBOG00000022091) #21	MYBPC3 (ENSSBOG00000030340) #22	MADD (ENSSBOG00000021915) #23	NR1H3 (ENSSBOG00000027982) #24	ACP2 (ENSSBOG00000033600) #25	DDB2 (ENSSBOG00000030867) #26	PACSIN3 (ENSSBOG00000033696) #27	ENSSBOG00000031368 #28	CSTPP1 (ENSSBOG00000033686) #29	LRP4 (ENSSBOG00000032261) #30	ENSSBOG00000032726	ENSSBOG00000028063	CKAP5 (ENSSBOG00000031735) #31	F2 (ENSSBOG00000020779) #32	ZNF408 (ENSSBOG00000033023) #33	ARHGAP1 (ENSSBOG00000032970) #34	ATG13 (ENSSBOG00000009657) #35
Capuchin	MODERN SPECIES	58					AGBL2 (ENSCCAG00000026390) #11	MTCH2 (ENSCCAG00000035226) #12	FAM180B (ENSCCAG00000028252) #13	NDUFS3 (ENSCCAG00000031365) #14	KBTBD4 (ENSCCAG00000020004) #15	PTPMT1 (ENSCCAG00000034346) #16	CELF1 (ENSCCAG00000033487) #17	RAPSN (ENSCCAG00000022014) #18	PSMC3 (ENSCCAG00000025080) #19	SLC39A13 (ENSCCAG00000034535) #20	SPI1 (ENSCCAG00000022473) #21	MYBPC3 (ENSCCAG00000036859) #22	MADD (ENSCCAG00000036617) #23	NR1H3 (ENSCCAG00000024854) #24	ACP2 (ENSCCAG00000022333) #25	DDB2 (ENSCCAG00000031012) #26	PACSIN3 (ENSCCAG00000031265) #27	ENSCCAG00000036464 #28	C11orf49 (ENSCCAG00000028967) #29	LRP4 (ENSCCAG00000034888) #30	ENSCCAG00000033202	CKAP5 (ENSCCAG00000029859) #31	PGAM4 (ENSCCAG00000037081)	F2 (ENSCCAG00000028699) #32	ZNF408 (ENSCCAG00000029472) #33	ARHGAP1 (ENSCCAG00000005865) #34	ATG13 (ENSCCAG00000033415) #35
Marmoset	MODERN SPECIES	2	OR4B1 (ENSCJAG00000044825)	PTPRJ (ENSCJAG00000020595) #8	NUP160 (ENSCJAG00000020260) #9	FNBP4 (ENSCJAG00000020254) #10	AGBL2 (ENSCJAG00000020239) #11	MTCH2 (ENSCJAG00000020213) #12	ENSCJAG00000039852	FAM180B (ENSCJAG00000043701) #13	NDUFS3 (ENSCJAG00000020194) #14	KBTBD4 (ENSCJAG00000020173) #15	PTPMT1 (ENSCJAG00000020163) #16	CELF1 (ENSCJAG00000020133) #17	RAPSN (ENSCJAG00000020129) #18	ENSCJAG00000020108 #19	SPI1 (ENSCJAG00000020100) #21	MYBPC3 (ENSCJAG00000020066) #22	MADD (ENSCJAG00000020045) #23	NR1H3 (ENSCJAG00000020019) #24	ACP2 (ENSCJAG00000020008) #25	SLC39A13 (ENSCJAG00000020101) #20	DDB2 (ENSCJAG00000020000) #26	PACSIN3 (ENSCJAG00000019993) #27	ENSCJAG00000019965 #28	CSTPP1 (ENSCJAG00000019962) #29	LRP4 (ENSCJAG00000019944) #30	CKAP5 (ENSCJAG00000019878) #31	F2 (ENSCJAG00000019864) #32	ZNF408 (ENSCJAG00000019859) #33	ARHGAP1 (ENSCJAG00000019849) #34	ATG13 (ENSCJAG00000019823) #35	HARBI1 (ENSCJAG00000046232) #36
Mas night monkey	MODERN SPECIES	349	NUP160 (ENSANAG00000025545) #9	ENSANAG00000034432	ENSANAG00000013634	FNBP4 (ENSANAG00000027721) #10	AGBL2 (ENSANAG00000033268) #11	MTCH2 (ENSANAG00000022984) #12	FAM180B (ENSANAG00000021375) #13	NDUFS3 (ENSANAG00000030907) #14	KBTBD4 (ENSANAG00000029505) #15	ENSANAG00000033117	CELF1 (ENSANAG00000031770) #17	RAPSN (ENSANAG00000022248) #18	ENSANAG00000037076 #19	SLC39A13 (ENSANAG00000027448) #20	SPI1 (ENSANAG00000029485) #21	MYBPC3 (ENSANAG00000023289) #22	MADD (ENSANAG00000024603) #23	NR1H3 (ENSANAG00000037990) #24	ACP2 (ENSANAG00000032696) #25	DDB2 (ENSANAG00000036510) #26	PACSIN3 (ENSANAG00000030038) #27	ARFGAP2 (ENSANAG00000031850) #28	ENSANAG00000026796	CSTPP1 (ENSANAG00000037882) #29	LRP4 (ENSANAG00000038492) #30	ENSANAG00000038320	CKAP5 (ENSANAG00000031236) #31	F2 (ENSANAG00000036904) #32	ZNF408 (ENSANAG00000036294) #33	ARHGAP1 (ENSANAG00000038289) #34	ATG13 (ENSANAG00000036615) #35
Tarsier	MODERN SPECIES	2325															SPI1 (ENSTSYG00000025440) #21	MYBPC3 (ENSTSYG00000035151) #22
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Tree shrew	MODERN SPECIES	1561															ENSTBEG00000001919 #21	MYBPC3 (ENSTBEG00000000966) #22	MADD (ENSTBEG00000000554) #23	NR1H3 (ENSTBEG00000000492) #24	ACP2 (ENSTBEG00000000444) #25	DDB2 (ENSTBEG00000000275) #26
Glires	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000155395.e.d	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37	ENSGT00940000160394.a
Naked mole-rat female	MODERN SPECIES	14	ENSHGLG00000003580	ENSHGLG00000041936	ENSHGLG00000039374	ENSHGLG00000008506 #8	ENSHGLG00000043784	MTCH2 (ENSHGLG00000017536) #12	FAM180B (ENSHGLG00000038229) #13	NDUFS3 (ENSHGLG00000018368) #14	KBTBD4 (ENSHGLG00000047234) #15	ENSHGLG00000037048	ENSHGLG00000006909 #17	RAPSN (ENSHGLG00000008521) #18	PSMC3 (ENSHGLG00000005713) #19	SLC39A13 (ENSHGLG00000041087) #20	ENSHGLG00000011456 #21	ENSHGLG00000044290 #22	NR1H3 (ENSHGLG00000014541) #24	ENSHGLG00000036516 #25	DDB2 (ENSHGLG00000018689) #26	ENSHGLG00000040462 #28	CSTPP1 (ENSHGLG00000018725) #29	ARHGAP1 (ENSHGLG00000017685) #34	ENSHGLG00000013428 #35	ENSHGLG00000018447 #36	AMBRA1 (ENSHGLG00000017564) #37	ENSHGLG00000034290	ENSHGLG00000042531	ENSHGLG00000032476	CREB3L1 (ENSHGLG00000048284)	ENSHGLG00000033741	ENSHGLG00000037709
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000155395.e.c.b	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37	ENSGT00940000160394.a
Guinea pig	MODERN SPECIES	72	ENSCPOG00000036627	PTPRJ (ENSCPOG00000000801) #8	NUP160 (ENSCPOG00000005289) #9	FNBP4 (ENSCPOG00000000320) #10	AGBL2 (ENSCPOG00000003935) #11	MTCH2 (ENSCPOG00000006293) #12	C1QTNF4 (ENSCPOG00000023948)	NDUFS3 (ENSCPOG00000006141) #14	KBTBD4 (ENSCPOG00000019448) #15	PTPMT1 (ENSCPOG00000031147) #16	CELF1 (ENSCPOG00000036381) #17	RAPSN (ENSCPOG00000015456) #18	PSMC3 (ENSCPOG00000008176) #19	SLC39A13 (ENSCPOG00000008169) #20	SPI1 (ENSCPOG00000022138) #21	MYBPC3 (ENSCPOG00000013368) #22	MADD (ENSCPOG00000013364) #23	NR1H3 (ENSCPOG00000013362) #24	ACP2 (ENSCPOG00000013359) #25	DDB2 (ENSCPOG00000013358) #26	PACSIN3 (ENSCPOG00000013356) #27	ARFGAP2 (ENSCPOG00000013352) #28	CSTPP1 (ENSCPOG00000020334) #29	LRP4 (ENSCPOG00000007072) #30	CKAP5 (ENSCPOG00000007054) #31	F2 (ENSCPOG00000026682) #32	ARHGAP1 (ENSCPOG00000013046) #34	ATG13 (ENSCPOG00000013042) #35	HARBI1 (ENSCPOG00000037304) #36	AMBRA1 (ENSCPOG00000007341) #37	CHRM4 (ENSCPOG00000020788)
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000158345 #7	ENSGT00940000155395.e.c.b	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37	ENSGT00940000160394.a
Long-tailed chinchilla	MODERN SPECIES	129	ENSCLAG00000012812	ENSCLAG00000013131	ENSCLAG00000012951	PTPRJ (ENSCLAG00000015568) #8	NUP160 (ENSCLAG00000015457) #9	FNBP4 (ENSCLAG00000014534) #10	MTCH2 (ENSCLAG00000012026) #12	C1QTNF4 (ENSCLAG00000015186)	NDUFS3 (ENSCLAG00000014873) #14	KBTBD4 (ENSCLAG00000016255) #15	CELF1 (ENSCLAG00000011791) #17	RAPSN (ENSCLAG00000015497) #18	PSMC3 (ENSCLAG00000013916) #19	SLC39A13 (ENSCLAG00000014480) #20	SPI1 (ENSCLAG00000017201) #21	MYBPC3 (ENSCLAG00000015418) #22	MADD (ENSCLAG00000012503) #23	NR1H3 (ENSCLAG00000013563) #24	ACP2 (ENSCLAG00000014608) #25	DDB2 (ENSCLAG00000016473) #26	ENSCLAG00000012709 #27	ARFGAP2 (ENSCLAG00000016467) #28	CSTPP1 (ENSCLAG00000014110) #29	LRP4 (ENSCLAG00000016159) #30	CKAP5 (ENSCLAG00000015801) #31	F2 (ENSCLAG00000015618) #32	ARHGAP1 (ENSCLAG00000013542) #34	ATG13 (ENSCLAG00000015328) #35	HARBI1 (ENSCLAG00000013578) #36	AMBRA1 (ENSCLAG00000015156) #37	CHRM4 (ENSCLAG00000013251)
Degu	MODERN SPECIES	59	ENSODEG00000016074	ENSODEG00000015266 #7	ENSODEG00000015275	PTPRJ (ENSODEG00000016025) #8	NUP160 (ENSODEG00000015381) #9	FNBP4 (ENSODEG00000016574) #10	AGBL2 (ENSODEG00000016111) #11	MTCH2 (ENSODEG00000015416) #12	NDUFS3 (ENSODEG00000015948) #14	KBTBD4 (ENSODEG00000015830) #15	CELF1 (ENSODEG00000015204) #17	RAPSN (ENSODEG00000015194) #18	ENSODEG00000016550 #19	SLC39A13 (ENSODEG00000015895) #20	SPI1 (ENSODEG00000015369) #21	MYBPC3 (ENSODEG00000016030) #22	MADD (ENSODEG00000017645) #23	NR1H3 (ENSODEG00000016180) #24	ACP2 (ENSODEG00000015528) #25	ENSODEG00000015965 #27	ENSODEG00000016456 #28	CSTPP1 (ENSODEG00000016656) #29	LRP4 (ENSODEG00000015720) #30	CKAP5 (ENSODEG00000016409) #31	F2 (ENSODEG00000016157) #32	ARHGAP1 (ENSODEG00000016156) #34	ATG13 (ENSODEG00000017294) #35	ENSODEG00000016339	AMBRA1 (ENSODEG00000016633) #37	CHRM4 (ENSODEG00000020352)	MDK (ENSODEG00000015931)
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Marmotini	ANCESTRAL SPECIES	22	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b.e #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Marmotini_b	ANCESTRAL SPECIES	23	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b.e #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Arctic ground squirrel	MODERN SPECIES	208	NUP160 (ENSUPAG00010014170) #9	FNBP4 (ENSUPAG00010014131) #10	AGBL2 (ENSUPAG00010014116) #11	MTCH2 (ENSUPAG00010014096) #12	C1QTNF4 (ENSUPAG00010014090)	FAM180B (ENSUPAG00010014076) #13	NDUFS3 (ENSUPAG00010014067) #14	KBTBD4 (ENSUPAG00010014056) #15	ENSUPAG00010014045	CELF1 (ENSUPAG00010013973) #17	RAPSN (ENSUPAG00010013926) #18	PSMC3 (ENSUPAG00010013908) #19	SLC39A13 (ENSUPAG00010013855) #20	SPI1 (ENSUPAG00010013850) #21	ENSUPAG00010013841	MYBPC3 (ENSUPAG00010013812) #22	MADD (ENSUPAG00010011229) #23	NR1H3 (ENSUPAG00010011188) #24	ACP2 (ENSUPAG00010011162) #25	DDB2 (ENSUPAG00010011149) #26	PACSIN3 (ENSUPAG00010011141) #27	ARFGAP2 (ENSUPAG00010011117) #28	CSTPP1 (ENSUPAG00010011093) #29	LRP4 (ENSUPAG00010011049) #30	CKAP5 (ENSUPAG00010010730) #31	F2 (ENSUPAG00010010714) #32	ZNF408 (ENSUPAG00010010704) #33	ARHGAP1 (ENSUPAG00010010696) #34	ATG13 (ENSUPAG00010010621) #35	HARBI1 (ENSUPAG00010010611) #36	AMBRA1 (ENSUPAG00010010430) #37
Squirrel	MODERN SPECIES	162	PTPRJ (ENSSTOG00000014795) #8	NUP160 (ENSSTOG00000014125) #9	FNBP4 (ENSSTOG00000014106) #10	AGBL2 (ENSSTOG00000003491) #11	ENSSTOG00000028441 #12	C1QTNF4 (ENSSTOG00000024273)	FAM180B (ENSSTOG00000000628) #13	NDUFS3 (ENSSTOG00000000622) #14	KBTBD4 (ENSSTOG00000020864) #15	PTPMT1 (ENSSTOG00000019770) #16	CELF1 (ENSSTOG00000000613) #17	RAPSN (ENSSTOG00000011047) #18	PSMC3 (ENSSTOG00000011038) #19	SLC39A13 (ENSSTOG00000027722) #20	SPI1 (ENSSTOG00000022735) #21	MYBPC3 (ENSSTOG00000026473) #22	MADD (ENSSTOG00000007626) #23	NR1H3 (ENSSTOG00000007611) #24	ACP2 (ENSSTOG00000007586) #25	DDB2 (ENSSTOG00000007571) #26	PACSIN3 (ENSSTOG00000007547) #27	ARFGAP2 (ENSSTOG00000007524) #28	CSTPP1 (ENSSTOG00000007512) #29	LRP4 (ENSSTOG00000005236) #30	CKAP5 (ENSSTOG00000005158) #31	F2 (ENSSTOG00000005130) #32	ZNF408 (ENSSTOG00000005114) #33	ARHGAP1 (ENSSTOG00000026557) #34	ATG13 (ENSSTOG00000005077) #35	HARBI1 (ENSSTOG00000005072) #36	AMBRA1 (ENSSTOG00000019411) #37
Alpin marmot	MODERN SPECIES	3	PTPRJ (ENSMMMG00000016023) #8	NUP160 (ENSMMMG00000015948) #9	FNBP4 (ENSMMMG00000015751) #10	ENSMMMG00000015743	ENSMMMG00000015697 #11	ENSMMMG00000015683 #12	FAM180B (ENSMMMG00000015675) #13	NDUFS3 (ENSMMMG00000015667) #14	KBTBD4 (ENSMMMG00000015654) #15	ENSMMMG00000015652	CELF1 (ENSMMMG00000015346) #17	RAPSN (ENSMMMG00000015294) #18	PSMC3 (ENSMMMG00000015270) #19	SLC39A13 (ENSMMMG00000015224) #20	SPI1 (ENSMMMG00000015212) #21	MYBPC3 (ENSMMMG00000015189) #22	MADD (ENSMMMG00000014606) #23	NR1H3 (ENSMMMG00000014541) #24	ACP2 (ENSMMMG00000014527) #25	DDB2 (ENSMMMG00000014518) #26	PACSIN3 (ENSMMMG00000014498) #27	ARFGAP2 (ENSMMMG00000014424) #28	CSTPP1 (ENSMMMG00000014382) #29	LRP4 (ENSMMMG00000014335) #30	CKAP5 (ENSMMMG00000013993) #31	F2 (ENSMMMG00000013961) #32	ZNF408 (ENSMMMG00000013944) #33	ARHGAP1 (ENSMMMG00000013934) #34	ATG13 (ENSMMMG00000013875) #35	HARBI1 (ENSMMMG00000013860) #36	AMBRA1 (ENSMMMG00000013284) #37
Eurasian red squirrel	MODERN SPECIES	2	FNBP4 (ENSSVLG00005008986) #10	AGBL2 (ENSSVLG00005009045) #11	MTCH2 (ENSSVLG00005009232) #12	ENSSVLG00005009265	FAM180B (ENSSVLG00005009289) #13	NDUFS3 (ENSSVLG00005009316) #14	KBTBD4 (ENSSVLG00005009359) #15	PTPMT1 (ENSSVLG00005009417) #16	CELF1 (ENSSVLG00005009492) #17	RAPSN (ENSSVLG00005009920) #18	ENSSVLG00005009993 #19	ENSSVLG00005010167 #20	ENSSVLG00005010225 #19	ENSSVLG00005010302 #20	SPI1 (ENSSVLG00005010597) #21	MYBPC3 (ENSSVLG00005010729) #22	MADD (ENSSVLG00005011762) #23	ENSSVLG00005012055	NR1H3 (ENSSVLG00005012159) #24	ACP2 (ENSSVLG00005012397) #25	DDB2 (ENSSVLG00005012634) #26	PACSIN3 (ENSSVLG00005013010) #27	ARFGAP2 (ENSSVLG00005013354) #28	CSTPP1 (ENSSVLG00005013495) #29	LRP4 (ENSSVLG00005013702) #30	CKAP5 (ENSSVLG00005013939) #31	F2 (ENSSVLG00005014116) #32	ARHGAP1 (ENSSVLG00005014685) #34	ENSSVLG00005014869 #35	HARBI1 (ENSSVLG00005015510) #36	AMBRA1 (ENSSVLG00005015569) #37
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000155395.e	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Kangaroo rat	MODERN SPECIES	444	Or4c3d (ENSDORG00000000936)	ENSDORG00000024502	Ptprj (ENSDORG00000008291) #8	Nup160 (ENSDORG00000004246) #9	Fnbp4 (ENSDORG00000004245) #10	Agbl2 (ENSDORG00000025903) #11	Mtch2 (ENSDORG00000001511) #12	C1qtnf4 (ENSDORG00000015597)	Kbtbd4 (ENSDORG00000015593) #15	Ptpmt1 (ENSDORG00000015591) #16	Celf1 (ENSDORG00000013721) #17	Rapsn (ENSDORG00000000757) #18	Psmc3 (ENSDORG00000000756) #19	Slc39a13 (ENSDORG00000000753) #20	Spi1 (ENSDORG00000007758) #21	Mybpc3 (ENSDORG00000007751) #22	Madd (ENSDORG00000007749) #23	Nr1h3 (ENSDORG00000007747) #24	Acp2 (ENSDORG00000007743) #25	Ddb2 (ENSDORG00000007741) #26	ENSDORG00000013060 #27	Arfgap2 (ENSDORG00000013057) #28	Cstpp1 (ENSDORG00000013052) #29	Lrp4 (ENSDORG00000001785) #30	Ckap5 (ENSDORG00000011373) #31	F2 (ENSDORG00000029579) #32	Zfp408 (ENSDORG00000000387) #33	Arhgap1 (ENSDORG00000000385) #34	Atg13 (ENSDORG00000000382) #35	ENSDORG00000028941	Ambra1 (ENSDORG00000008382) #37
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000155395.e	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000155395.e	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000164050	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000158345.g #7	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000158345.g #7	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Golden Hamster	MODERN SPECIES	618	ENSMAUG00000008266	ENSMAUG00000006795 #7	Ptprj (ENSMAUG00000011509) #8	Nup160 (ENSMAUG00000009877) #9	Agbl2 (ENSMAUG00000013242) #11	Mtch2 (ENSMAUG00000009619) #12	C1qtnf4 (ENSMAUG00000009128)	Ndufs3 (ENSMAUG00000010036) #14	Kbtbd4 (ENSMAUG00000009694) #15	Ptpmt1 (ENSMAUG00000010436) #16	Celf1 (ENSMAUG00000009468) #17	Rapsn (ENSMAUG00000008690) #18	Psmc3 (ENSMAUG00000007346) #19	ENSMAUG00000009110 #20	Spi1 (ENSMAUG00000008854) #21	Mybpc3 (ENSMAUG00000008229) #22	Madd (ENSMAUG00000009156) #23	Nr1h3 (ENSMAUG00000008657) #24	Acp2 (ENSMAUG00000007767) #25	Ddb2 (ENSMAUG00000010179) #26	Pacsin3 (ENSMAUG00000009572) #27	Arfgap2 (ENSMAUG00000009218) #28	ENSMAUG00000008870	ENSMAUG00000008742	Cstpp1 (ENSMAUG00000008635) #29	Lrp4 (ENSMAUG00000016435) #30	Ckap5 (ENSMAUG00000012944) #31	F2 (ENSMAUG00000009414) #32	Arhgap1 (ENSMAUG00000012048) #34	Atg13 (ENSMAUG00000011052) #35	Harbi1 (ENSMAUG00000012193) #36
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001024110	Ptprj (ENSCGRG00001023856) #8	Nup160 (ENSCGRG00001023375) #9	Fnbp4 (ENSCGRG00001022832) #10	Agbl2 (ENSCGRG00001000549) #11	Mtch2 (ENSCGRG00001024807) #12	C1qtnf4 (ENSCGRG00001007540)	Ndufs3 (ENSCGRG00001024136) #14	Kbtbd4 (ENSCGRG00001023919) #15	Ptpmt1 (ENSCGRG00001012152) #16	Celf1 (ENSCGRG00001011274) #17	Rapsn (ENSCGRG00001009650) #18	Psmc3 (ENSCGRG00001005657) #19	Slc39a13 (ENSCGRG00001003447) #20	Spi1 (ENSCGRG00001009684) #21	Mybpc3 (ENSCGRG00001006702) #22	Madd (ENSCGRG00001024681) #23	Nr1h3 (ENSCGRG00001022656) #24	Acp2 (ENSCGRG00001022138) #25	Ddb2 (ENSCGRG00001012939) #26	Pacsin3 (ENSCGRG00001011840) #27	Arfgap2 (ENSCGRG00001010700) #28	Cstpp1 (ENSCGRG00001020042) #29	Lrp4 (ENSCGRG00001018783) #30	Ckap5 (ENSCGRG00001013368) #31	F2 (ENSCGRG00001023426) #32	Zfp408 (ENSCGRG00001023588) #33	Arhgap1 (ENSCGRG00001023260) #34	ENSCGRG00001022859	Atg13 (ENSCGRG00001022112) #35	Harbi1 (ENSCGRG00001021313) #36
Cricetidae_B	ANCESTRAL SPECIES	34	ENSGT00940000158345.g #7	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Prairie vole	MODERN SPECIES	81	Ptprj (ENSMOCG00000020009) #8	Nup160 (ENSMOCG00000015911) #9	Fnbp4 (ENSMOCG00000016333) #10	Agbl2 (ENSMOCG00000015547) #11	Mtch2 (ENSMOCG00000001577) #12	C1qtnf4 (ENSMOCG00000013500)	Ndufs3 (ENSMOCG00000009375) #14	Kbtbd4 (ENSMOCG00000021780) #15	Ptpmt1 (ENSMOCG00000018913) #16	Celf1 (ENSMOCG00000012633) #17	Rapsn (ENSMOCG00000012267) #18	Psmc3 (ENSMOCG00000001464) #19	ENSMOCG00000006097 #20	ENSMOCG00000008195 #20	Spi1 (ENSMOCG00000006114) #21	Mybpc3 (ENSMOCG00000008344) #22	Madd (ENSMOCG00000003278) #23	Nr1h3 (ENSMOCG00000010671) #24	Acp2 (ENSMOCG00000002882) #25	Ddb2 (ENSMOCG00000021291) #26	Pacsin3 (ENSMOCG00000022577) #27	Arfgap2 (ENSMOCG00000016700) #28	Cstpp1 (ENSMOCG00000006672) #29	Lrp4 (ENSMOCG00000005823) #30	Ckap5 (ENSMOCG00000022214) #31	F2 (ENSMOCG00000019585) #32	Arhgap1 (ENSMOCG00000008533) #34	Atg13 (ENSMOCG00000018209) #35	ENSMOCG00000007253	Ambra1 (ENSMOCG00000018792) #37	Chrm4 (ENSMOCG00000016103)
Northern American deer mouse	MODERN SPECIES	17	ENSPEMG00000027548	ENSPEMG00000030020 #7	Ptprj (ENSPEMG00000013280) #8	Nup160 (ENSPEMG00000018101) #9	Fnbp4 (ENSPEMG00000016688) #10	Agbl2 (ENSPEMG00000001437) #11	Mtch2 (ENSPEMG00000010063) #12	C1qtnf4 (ENSPEMG00000024602)	Ndufs3 (ENSPEMG00000007248) #14	Kbtbd4 (ENSPEMG00000001992) #15	Ptpmt1 (ENSPEMG00000030250) #16	Celf1 (ENSPEMG00000015644) #17	Rapsn (ENSPEMG00000016952) #18	Slc39a13 (ENSPEMG00000016290) #20	Spi1 (ENSPEMG00000009647) #21	Mybpc3 (ENSPEMG00000009479) #22	Madd (ENSPEMG00000001264) #23	Nr1h3 (ENSPEMG00000018824) #24	Acp2 (ENSPEMG00000011860) #25	Ddb2 (ENSPEMG00000012899) #26	Pacsin3 (ENSPEMG00000018424) #27	Arfgap2 (ENSPEMG00000009220) #28	Cstpp1 (ENSPEMG00000018931) #29	Lrp4 (ENSPEMG00000015598) #30	Ckap5 (ENSPEMG00000007231) #31	F2 (ENSPEMG00000018118) #32	Zfp408 (ENSPEMG00000016757) #33	Arhgap1 (ENSPEMG00000011370) #34	Atg13 (ENSPEMG00000017021) #35	Harbi1 (ENSPEMG00000013606) #36	ENSPEMG00000025318
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000158345.i #7	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Mus	ANCESTRAL SPECIES	1	ENSGT00940000158345.i #7	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Mus_A	ANCESTRAL SPECIES		ENSGT00940000158345.i #7	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000158345.i.a.a #7	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Mus_C	ANCESTRAL SPECIES		ENSGT00940000158345.i.a.a #7	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
spretus	MODERN SPECIES	11	MGP_SPRETEiJ_G0024850 #7	MGP_SPRETEiJ_G0024849 #7	Ptprj (MGP_SPRETEiJ_G0024851) #8	Nup160 (MGP_SPRETEiJ_G0024852) #9	Fnbp4 (MGP_SPRETEiJ_G0024853) #10	Agbl2 (MGP_SPRETEiJ_G0024854) #11	Mtch2 (MGP_SPRETEiJ_G0024855) #12	C1qtnf4 (MGP_SPRETEiJ_G0024856)	Ndufs3 (MGP_SPRETEiJ_G0024857) #14	Kbtbd4 (MGP_SPRETEiJ_G0024858) #15	Celf1 (MGP_SPRETEiJ_G0024859) #17	Rapsn (MGP_SPRETEiJ_G0024860) #18	Psmc3 (MGP_SPRETEiJ_G0024861) #19	Slc39a13 (MGP_SPRETEiJ_G0024862) #20	Spi1 (MGP_SPRETEiJ_G0024863) #21	Mybpc3 (MGP_SPRETEiJ_G0024864) #22	Madd (MGP_SPRETEiJ_G0024865) #23	Nr1h3 (MGP_SPRETEiJ_G0024866) #24	Acp2 (MGP_SPRETEiJ_G0024867) #25	Ddb2 (MGP_SPRETEiJ_G0024868) #26	Pacsin3 (MGP_SPRETEiJ_G0024869) #27	Arfgap2 (MGP_SPRETEiJ_G0024870) #28	Cstpp1 (MGP_SPRETEiJ_G0024871) #29	Lrp4 (MGP_SPRETEiJ_G0024872) #30	Ckap5 (MGP_SPRETEiJ_G0024873) #31	F2 (MGP_SPRETEiJ_G0024874) #32	Zfp408 (MGP_SPRETEiJ_G0024875) #33	Arhgap1 (MGP_SPRETEiJ_G0024876) #34	Atg13 (MGP_SPRETEiJ_G0024877) #35	Harbi1 (MGP_SPRETEiJ_G0024878) #36	Ambra1 (MGP_SPRETEiJ_G0024879) #37
Steppe mouse	MODERN SPECIES	36	Nup160 (ENSMSIG00000027860) #9	ENSMSIG00000027856	Fnbp4 (ENSMSIG00000027843) #10	Agbl2 (ENSMSIG00000027703) #11	ENSMSIG00000027642 #12	C1qtnf4 (ENSMSIG00000027637)	Ndufs3 (ENSMSIG00000027630) #14	Kbtbd4 (ENSMSIG00000027623) #15	ENSMSIG00000027615 #16	Celf1 (ENSMSIG00000027572) #17	ENSMSIG00000027554	Rapsn (ENSMSIG00000027530) #18	Psmc3 (ENSMSIG00000027459) #19	Slc39a13 (ENSMSIG00000027429) #20	Spi1 (ENSMSIG00000027421) #21	Mybpc3 (ENSMSIG00000027308) #22	Madd (ENSMSIG00000021063) #23	Nr1h3 (ENSMSIG00000020950) #24	Acp2 (ENSMSIG00000020936) #25	Ddb2 (ENSMSIG00000020921) #26	Pacsin3 (ENSMSIG00000020892) #27	Arfgap2 (ENSMSIG00000020760) #28	ENSMSIG00000020727 #29	ENSMSIG00000020721	Lrp4 (ENSMSIG00000020667) #30	ENSMSIG00000020658	Ckap5 (ENSMSIG00000020211) #31	F2 (ENSMSIG00000020083) #32	Zfp408 (ENSMSIG00000020068) #33	Arhgap1 (ENSMSIG00000020000) #34	Atg13 (ENSMSIG00000019915) #35
Mouse	MODERN SPECIES	11	Or4x13 (ENSMUSG00000082980) #7	Ptprj (ENSMUSG00000025314) #8	Nup160 (ENSMUSG00000051329) #9	Fnbp4 (ENSMUSG00000008200) #10	Agbl2 (ENSMUSG00000040812) #11	Mtch2 (ENSMUSG00000027282) #12	C1qtnf4 (ENSMUSG00000040794)	Ndufs3 (ENSMUSG00000005510) #14	Kbtbd4 (ENSMUSG00000005505) #15	Ptpmt1 (ENSMUSG00000063235) #16	Celf1 (ENSMUSG00000005506) #17	Rapsn (ENSMUSG00000002104) #18	Psmc3 (ENSMUSG00000002102) #19	Slc39a13 (ENSMUSG00000002105) #20	Spi1 (ENSMUSG00000002111) #21	Mybpc3 (ENSMUSG00000002100) #22	Madd (ENSMUSG00000040687) #23	Nr1h3 (ENSMUSG00000002108) #24	Acp2 (ENSMUSG00000002103) #25	Ddb2 (ENSMUSG00000002109) #26	Pacsin3 (ENSMUSG00000027257) #27	Arfgap2 (ENSMUSG00000027255) #28	Cstpp1 (ENSMUSG00000040591) #29	Lrp4 (ENSMUSG00000027253) #30	Ckap5 (ENSMUSG00000040549) #31	F2 (ENSMUSG00000027249) #32	Zfp408 (ENSMUSG00000075040) #33	Arhgap1 (ENSMUSG00000027247) #34	Atg13 (ENSMUSG00000027244) #35	Harbi1 (ENSMUSG00000027243) #36	Ambra1 (ENSMUSG00000040506) #37
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0023939 #7	Ptprj (MGP_CAROLIEiJ_G0023940) #8	Nup160 (MGP_CAROLIEiJ_G0023941) #9	Fnbp4 (MGP_CAROLIEiJ_G0023942) #10	Agbl2 (MGP_CAROLIEiJ_G0023943) #11	Mtch2 (MGP_CAROLIEiJ_G0023944) #12	Madd (MGP_CAROLIEiJ_G0023945) #23	C1qtnf4 (MGP_CAROLIEiJ_G0023946)	Ndufs3 (MGP_CAROLIEiJ_G0023947) #14	Kbtbd4 (MGP_CAROLIEiJ_G0023948) #15	Celf1 (MGP_CAROLIEiJ_G0023949) #17	Rapsn (MGP_CAROLIEiJ_G0023950) #18	Psmc3 (MGP_CAROLIEiJ_G0023951) #19	Slc39a13 (MGP_CAROLIEiJ_G0023952) #20	Spi1 (MGP_CAROLIEiJ_G0023953) #21	Mybpc3 (MGP_CAROLIEiJ_G0023954) #22	Nr1h3 (MGP_CAROLIEiJ_G0023955) #24	Acp2 (MGP_CAROLIEiJ_G0023956) #25	Ddb2 (MGP_CAROLIEiJ_G0023957) #26	Pacsin3 (MGP_CAROLIEiJ_G0023958) #27	Arfgap2 (MGP_CAROLIEiJ_G0023959) #28	Cstpp1 (MGP_CAROLIEiJ_G0023960) #29	MGP_CAROLIEiJ_G0023961	Lrp4 (MGP_CAROLIEiJ_G0023962) #30	Ckap5 (MGP_CAROLIEiJ_G0023963) #31	F2 (MGP_CAROLIEiJ_G0023964) #32	Zfp408 (MGP_CAROLIEiJ_G0023965) #33	Arhgap1 (MGP_CAROLIEiJ_G0023966) #34	Atg13 (MGP_CAROLIEiJ_G0023967) #35	Harbi1 (MGP_CAROLIEiJ_G0023968) #36	Ambra1 (MGP_CAROLIEiJ_G0023969) #37
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025375 #7	MGP_PahariEiJ_G0025376 #7	Ptprj (MGP_PahariEiJ_G0025377) #8	Nup160 (MGP_PahariEiJ_G0025378) #9	Fnbp4 (MGP_PahariEiJ_G0025379) #10	Agbl2 (MGP_PahariEiJ_G0025380) #11	Mtch2 (MGP_PahariEiJ_G0025381) #12	C1qtnf4 (MGP_PahariEiJ_G0025382)	Ndufs3 (MGP_PahariEiJ_G0025383) #14	Kbtbd4 (MGP_PahariEiJ_G0025384) #15	Celf1 (MGP_PahariEiJ_G0025385) #17	Rapsn (MGP_PahariEiJ_G0025386) #18	Psmc3 (MGP_PahariEiJ_G0025387) #19	Slc39a13 (MGP_PahariEiJ_G0025388) #20	Spi1 (MGP_PahariEiJ_G0025389) #21	Mybpc3 (MGP_PahariEiJ_G0025390) #22	Madd (MGP_PahariEiJ_G0025391) #23	Nr1h3 (MGP_PahariEiJ_G0025392) #24	Acp2 (MGP_PahariEiJ_G0025393) #25	Ddb2 (MGP_PahariEiJ_G0025394) #26	Pacsin3 (MGP_PahariEiJ_G0025395) #27	Arfgap2 (MGP_PahariEiJ_G0025396) #28	Cstpp1 (MGP_PahariEiJ_G0025397) #29	MGP_PahariEiJ_G0025398	Lrp4 (MGP_PahariEiJ_G0025399) #30	Ckap5 (MGP_PahariEiJ_G0025400) #31	F2 (MGP_PahariEiJ_G0025401) #32	Zfp408 (MGP_PahariEiJ_G0025402) #33	Arhgap1 (MGP_PahariEiJ_G0025403) #34	Atg13 (MGP_PahariEiJ_G0025404) #35	Harbi1 (MGP_PahariEiJ_G0025405) #36
Rat	MODERN SPECIES	13	ENSRNOG00000065949 #7	Ptprj (ENSRNOG00000034025) #8	Nup160 (ENSRNOG00000028215) #9	Fnbp4 (ENSRNOG00000007241) #10	Agbl2 (ENSRNOG00000008467) #11	Mtch2 (ENSRNOG00000058658) #12	C1qtnf4 (ENSRNOG00000069579)	Ndufs3 (ENSRNOG00000009155) #14	Kbtbd4 (ENSRNOG00000009397) #15	Ptpmt1 (ENSRNOG00000009723) #16	Celf1 (ENSRNOG00000010379) #17	Rapsn (ENSRNOG00000011208) #18	Psmc3 (ENSRNOG00000011414) #19	Slc39a13 (ENSRNOG00000011981) #20	Spi1 (ENSRNOG00000012172) #21	Mybpc3 (ENSRNOG00000012307) #22	Madd (ENSRNOG00000012568) #23	Nr1h3 (ENSRNOG00000013172) #24	Acp2 (ENSRNOG00000013594) #25	Ddb2 (ENSRNOG00000014071) #26	Pacsin3 (ENSRNOG00000014204) #27	Arfgap2 (ENSRNOG00000014429) #28	Cstpp1 (ENSRNOG00000014798) #29	Lrp4 (ENSRNOG00000015285) #30	Ckap5 (ENSRNOG00000016067) #31	F2 (ENSRNOG00000016325) #32	ENSRNOG00000070459 #33	Arhgap1 (ENSRNOG00000016610) #34	Atg13 (ENSRNOG00000016984) #35	Ambra1 (ENSRNOG00000017422) #37	Chrm4 (ENSRNOG00000017556)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1238	Ptprj (ENSNGAG00000019187) #8	Nup160 (ENSNGAG00000011564) #9	Fnbp4 (ENSNGAG00000000488) #10	Agbl2 (ENSNGAG00000000234) #11	Mtch2 (ENSNGAG00000003094) #12	C1qtnf4 (ENSNGAG00000009680)	Ndufs3 (ENSNGAG00000012046) #14	Kbtbd4 (ENSNGAG00000000276) #15	Ptpmt1 (ENSNGAG00000017776) #16	ENSNGAG00000018260	Celf1 (ENSNGAG00000017390) #17	Rapsn (ENSNGAG00000007295) #18	Psmc3 (ENSNGAG00000017843) #19	Slc39a13 (ENSNGAG00000017536) #20	Spi1 (ENSNGAG00000010713) #21	Mybpc3 (ENSNGAG00000000260) #22	Madd (ENSNGAG00000017768) #23	Nr1h3 (ENSNGAG00000015402) #24	Acp2 (ENSNGAG00000007455) #25	Ddb2 (ENSNGAG00000017336) #26	Pacsin3 (ENSNGAG00000014205) #27	Arfgap2 (ENSNGAG00000009124) #28	Cstpp1 (ENSNGAG00000000171) #29	Lrp4 (ENSNGAG00000020436) #30	Ckap5 (ENSNGAG00000001579) #31	F2 (ENSNGAG00000010351) #32	Zfp408 (ENSNGAG00000000309) #33	Arhgap1 (ENSNGAG00000013969) #34	Atg13 (ENSNGAG00000015785) #35	ENSNGAG00000012504
Lesser Egyptian jerboa	MODERN SPECIES	62			Ptprj (ENSJJAG00000012062) #8	Nup160 (ENSJJAG00000020091) #9	Fnbp4 (ENSJJAG00000009203) #10	Agbl2 (ENSJJAG00000022894) #11	Mtch2 (ENSJJAG00000011880) #12	C1qtnf4 (ENSJJAG00000023278)	Ndufs3 (ENSJJAG00000023557) #14	Kbtbd4 (ENSJJAG00000020543) #15	Celf1 (ENSJJAG00000020280) #17	Rapsn (ENSJJAG00000020297) #18	Psmc3 (ENSJJAG00000021354) #19	Slc39a13 (ENSJJAG00000007370) #20	Spi1 (ENSJJAG00000019221) #21	Mybpc3 (ENSJJAG00000018706) #22	Madd (ENSJJAG00000015606) #23	Nr1h3 (ENSJJAG00000020697) #24	Acp2 (ENSJJAG00000019515) #25	Ddb2 (ENSJJAG00000016552) #26	Pacsin3 (ENSJJAG00000023252) #27	Arfgap2 (ENSJJAG00000003129) #28	Cstpp1 (ENSJJAG00000008330) #29	Lrp4 (ENSJJAG00000014851) #30	Ckap5 (ENSJJAG00000023265) #31	F2 (ENSJJAG00000005619) #32	Zfp408 (ENSJJAG00000015381) #33	Arhgap1 (ENSJJAG00000022610) #34	Atg13 (ENSJJAG00000024173) #35	ENSJJAG00000015195	ENSJJAG00000016975
Lagomorpha	ANCESTRAL SPECIES	4	ENSGT00940000155395	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Rabbit	MODERN SPECIES		ENSOCUG00000030076	PTPRJ (ENSOCUG00000001933) #8	NUP160 (ENSOCUG00000017545) #9	FNBP4 (ENSOCUG00000017534) #10	AGBL2 (ENSOCUG00000017524) #11	MTCH2 (ENSOCUG00000006368) #12	C1QTNF4 (ENSOCUG00000006365)	FAM180B (ENSOCUG00000006361) #13	NDUFS3 (ENSOCUG00000006359) #14	KBTBD4 (ENSOCUG00000006353) #15	PTPMT1 (ENSOCUG00000021229) #16	CELF1 (ENSOCUG00000001311) #17	RAPSN (ENSOCUG00000008892) #18	PSMC3 (ENSOCUG00000026980) #19	SLC39A13 (ENSOCUG00000005557) #20	MYBPC3 (ENSOCUG00000002112) #22	MADD (ENSOCUG00000002099) #23	NR1H3 (ENSOCUG00000002095) #24	ACP2 (ENSOCUG00000013342) #25	DDB2 (ENSOCUG00000002076) #26	PACSIN3 (ENSOCUG00000027715) #27	ENSOCUG00000002073 #28	CSTPP1 (ENSOCUG00000002066) #29	LRP4 (ENSOCUG00000002052) #30	CKAP5 (ENSOCUG00000016200) #31	ZNF408 (ENSOCUG00000010953) #33	ARHGAP1 (ENSOCUG00000016160) #34	ATG13 (ENSOCUG00000016144) #35	HARBI1 (ENSOCUG00000016137) #36	AMBRA1 (ENSOCUG00000016117) #37	CHRM4 (ENSOCUG00000021064)
Pika	MODERN SPECIES	3586																MYBPC3 (ENSOPRG00000009569) #22	MADD (ENSOPRG00000009509) #23	NR1H3 (ENSOPRG00000009497) #24	ACP2 (ENSOPRG00000009485) #25	DDB2 (ENSOPRG00000009468) #26	PACSIN3 (ENSOPRG00000009451) #27	ARFGAP2 (ENSOPRG00000009432) #28	CSTPP1 (ENSOPRG00000009417) #29	LRP4 (ENSOPRG00000009347) #30	CKAP5 (ENSOPRG00000009287) #31	ENSOPRG00000009249	ZNF408 (ENSOPRG00000009225) #33	ARHGAP1 (ENSOPRG00000009201) #34	ATG13 (ENSOPRG00000009172) #35
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Eulipotyphla	ANCESTRAL SPECIES	133																ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26
Hedgehog	MODERN SPECIES	1291																ENSEEUG00000000080 #22	MADD (ENSEEUG00000000071) #23
Common shrew	MODERN SPECIES	2331																ENSSARG00000002570 #22	ENSSARG00000002437 #23	NR1H3 (ENSSARG00000002403) #24	ACP2 (ENSSARG00000002360) #25	DDB2 (ENSSARG00000002337) #26
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	7	SYT13 (ENSPCTG00005015941)	CHST1 (ENSPCTG00005016008)	SLC35C1 (ENSPCTG00005016021)	CRY2 (ENSPCTG00005016092)	MAPK8IP1 (ENSPCTG00005016404)	C16H11orf94 (ENSPCTG00005016710)	PEX16 (ENSPCTG00005016747)	LARGE2 (ENSPCTG00005016908)	PHF21A (ENSPCTG00005017366)	AMBRA1 (ENSPCTG00005017524) #37	ENSPCTG00005018324 #35	CKAP5 (ENSPCTG00005019025) #31	LRP4 (ENSPCTG00005019305) #30	ENSPCTG00005019663	NR1H3 (ENSPCTG00005019704) #24	ENSPCTG00005019900 #22	CELF1 (ENSPCTG00005020176) #17	NDUFS3 (ENSPCTG00005020272) #14	FAM180B (ENSPCTG00005020314) #13	ENSPCTG00005020333	ENSPCTG00005020351 #12	AGBL2 (ENSPCTG00005020384) #11	FNBP4 (ENSPCTG00005020443) #10	NUP160 (ENSPCTG00005020494) #9	PTPRJ (ENSPCTG00005020731) #8	OR8K5 (ENSPCTG00005021273)	ENSPCTG00005021353	APLNR (ENSPCTG00005021748)	LRRC55 (ENSPCTG00005021755)	UBE2L6 (ENSPCTG00005021768)	SERPING1 (ENSPCTG00005021786)
Sperm whale	MODERN SPECIES	222													PSMC3 (ENSPCTG00005018286) #19	SLC39A13 (ENSPCTG00005018146) #20	SPI1 (ENSPCTG00005018053) #21	ENSPCTG00005017868 #22
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Narwhal	MODERN SPECIES	314	ENSMMNG00015021918	NUP160 (ENSMMNG00015021914) #9	FNBP4 (ENSMMNG00015021908) #10	AGBL2 (ENSMMNG00015021887) #11	MTCH2 (ENSMMNG00015021874) #12	ENSMMNG00015021868	FAM180B (ENSMMNG00015021863) #13	NDUFS3 (ENSMMNG00015021859) #14	KBTBD4 (ENSMMNG00015021852) #15	PTPMT1 (ENSMMNG00015021844) #16	CELF1 (ENSMMNG00015021830) #17	RAPSN (ENSMMNG00015021818) #18	PSMC3 (ENSMMNG00015021802) #19	SLC39A13 (ENSMMNG00015021773) #20	SPI1 (ENSMMNG00015021760) #21	MYBPC3 (ENSMMNG00015021686) #22	MADD (ENSMMNG00015021102) #23	NR1H3 (ENSMMNG00015020682) #24	ACP2 (ENSMMNG00015020547) #25	DDB2 (ENSMMNG00015020426) #26	PACSIN3 (ENSMMNG00015020360) #27	ARFGAP2 (ENSMMNG00015020303) #28	CSTPP1 (ENSMMNG00015020243) #29	LRP4 (ENSMMNG00015020152) #30	CKAP5 (ENSMMNG00015019798) #31	F2 (ENSMMNG00015019642) #32	ZNF408 (ENSMMNG00015019610) #33	ARHGAP1 (ENSMMNG00015019583) #34	ATG13 (ENSMMNG00015019491) #35	HARBI1 (ENSMMNG00015019436) #36	AMBRA1 (ENSMMNG00015019294) #37
Beluga whale	MODERN SPECIES	7	ENSDLEG00000003879	NUP160 (ENSDLEG00000003898) #9	FNBP4 (ENSDLEG00000003930) #10	ENSDLEG00000003961 #11	MTCH2 (ENSDLEG00000003979) #12	ENSDLEG00000004045	FAM180B (ENSDLEG00000000116) #13	NDUFS3 (ENSDLEG00000000150) #14	KBTBD4 (ENSDLEG00000000205) #15	PTPMT1 (ENSDLEG00000000244) #16	CELF1 (ENSDLEG00000000264) #17	RAPSN (ENSDLEG00000000322) #18	PSMC3 (ENSDLEG00000000360) #19	SLC39A13 (ENSDLEG00000000405) #20	SPI1 (ENSDLEG00000000443) #21	MYBPC3 (ENSDLEG00000000811) #22	MADD (ENSDLEG00000003539) #23	NR1H3 (ENSDLEG00000013403) #24	ACP2 (ENSDLEG00000013563) #25	DDB2 (ENSDLEG00000014125) #26	PACSIN3 (ENSDLEG00000014213) #27	ARFGAP2 (ENSDLEG00000014461) #28	CSTPP1 (ENSDLEG00000016182) #29	LRP4 (ENSDLEG00000016355) #30	CKAP5 (ENSDLEG00000018239) #31	F2 (ENSDLEG00000018821) #32	ZNF408 (ENSDLEG00000018910) #33	ARHGAP1 (ENSDLEG00000018942) #34	ATG13 (ENSDLEG00000019150) #35	HARBI1 (ENSDLEG00000019555) #36	AMBRA1 (ENSDLEG00000019560) #37
Vaquita	MODERN SPECIES	19	PTPRJ (ENSPSNG00000012615) #8	NUP160 (ENSPSNG00000012237) #9	FNBP4 (ENSPSNG00000012146) #10	AGBL2 (ENSPSNG00000012052) #11	MTCH2 (ENSPSNG00000011989) #12	ENSPSNG00000011949	FAM180B (ENSPSNG00000011919) #13	NDUFS3 (ENSPSNG00000011780) #14	KBTBD4 (ENSPSNG00000011651) #15	PTPMT1 (ENSPSNG00000011591) #16	CELF1 (ENSPSNG00000011349) #17	RAPSN (ENSPSNG00000010989) #18	PSMC3 (ENSPSNG00000010889) #19	SLC39A13 (ENSPSNG00000010822) #20	SPI1 (ENSPSNG00000010691) #21	MYBPC3 (ENSPSNG00000009622) #22	MADD (ENSPSNG00000007281) #23	NR1H3 (ENSPSNG00000006534) #24	ACP2 (ENSPSNG00000006273) #25	DDB2 (ENSPSNG00000006057) #26	PACSIN3 (ENSPSNG00000006003) #27	ENSPSNG00000005975 #28	CSTPP1 (ENSPSNG00000005920) #29	LRP4 (ENSPSNG00000005781) #30	CKAP5 (ENSPSNG00000005667) #31	F2 (ENSPSNG00000005610) #32	ZNF408 (ENSPSNG00000005582) #33	ARHGAP1 (ENSPSNG00000005549) #34	ATG13 (ENSPSNG00000005490) #35	HARBI1 (ENSPSNG00000005453) #36	AMBRA1 (ENSPSNG00000005291) #37
Dolphin	MODERN SPECIES	2041					MTCH2 (ENSTTRG00000014169) #12	C1QTNF4 (ENSTTRG00000014168)	FAM180B (ENSTTRG00000014167) #13	NDUFS3 (ENSTTRG00000014164) #14	KBTBD4 (ENSTTRG00000014159) #15	ENSTTRG00000014158	CELF1 (ENSTTRG00000014157) #17	RAPSN (ENSTTRG00000014156) #18	PSMC3 (ENSTTRG00000014155) #19	SLC39A13 (ENSTTRG00000014154) #20	SPI1 (ENSTTRG00000014153) #21	MYBPC3 (ENSTTRG00000014152) #22	MADD (ENSTTRG00000014150) #23	NR1H3 (ENSTTRG00000014149) #24	ACP2 (ENSTTRG00000014147) #25	DDB2 (ENSTTRG00000014146) #26	PACSIN3 (ENSTTRG00000014143) #27	ARFGAP2 (ENSTTRG00000014137) #28	CSTPP1 (ENSTTRG00000014133) #29	LRP4 (ENSTTRG00000014129) #30	CKAP5 (ENSTTRG00000014121) #31
Blue whale	MODERN SPECIES	19	ENSBMSG00010022025	NUP160 (ENSBMSG00010022017) #9	FNBP4 (ENSBMSG00010022012) #10	AGBL2 (ENSBMSG00010022008) #11	MTCH2 (ENSBMSG00010022003) #12	ENSBMSG00010022000	FAM180B (ENSBMSG00010021998) #13	NDUFS3 (ENSBMSG00010021996) #14	KBTBD4 (ENSBMSG00010021993) #15	PTPMT1 (ENSBMSG00010021990) #16	CELF1 (ENSBMSG00010021983) #17	RAPSN (ENSBMSG00010021975) #18	PSMC3 (ENSBMSG00010021968) #19	SLC39A13 (ENSBMSG00010021960) #20	SPI1 (ENSBMSG00010021953) #21	MYBPC3 (ENSBMSG00010021914) #22	MADD (ENSBMSG00010018497) #23	NR1H3 (ENSBMSG00010018229) #24	ACP2 (ENSBMSG00010018103) #25	DDB2 (ENSBMSG00010017897) #26	PACSIN3 (ENSBMSG00010017852) #27	ARFGAP2 (ENSBMSG00010017710) #28	CSTPP1 (ENSBMSG00010017644) #29	LRP4 (ENSBMSG00010017494) #30	CKAP5 (ENSBMSG00010017392) #31	F2 (ENSBMSG00010017325) #32	ZNF408 (ENSBMSG00010017299) #33	ENSBMSG00010017280	ARHGAP1 (ENSBMSG00010017220) #34	ATG13 (ENSBMSG00010017110) #35	HARBI1 (ENSBMSG00010017065) #36
Pecora	ANCESTRAL SPECIES	7	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Percora_a	ANCESTRAL SPECIES	6	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Bovidae	ANCESTRAL SPECIES	6	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Bovinae	ANCESTRAL SPECIES	26	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
American bison	MODERN SPECIES	3100	ENSBBBG00000012168	PTPRJ (ENSBBBG00000012200) #8	NUP160 (ENSBBBG00000012218) #9	FNBP4 (ENSBBBG00000012233) #10	AGBL2 (ENSBBBG00000012259) #11	MTCH2 (ENSBBBG00000002309) #12	FAM180B (ENSBBBG00000002312) #13	NDUFS3 (ENSBBBG00000012284) #14	KBTBD4 (ENSBBBG00000012295) #15	PTPMT1 (ENSBBBG00000001931) #16	CELF1 (ENSBBBG00000012337) #17	RAPSN (ENSBBBG00000002335) #18	PSMC3 (ENSBBBG00000002347) #19	SLC39A13 (ENSBBBG00000002358) #20	ENSBBBG00000012398	MYBPC3 (ENSBBBG00000012763) #22	MADD (ENSBBBG00000013202) #23	NR1H3 (ENSBBBG00000013293) #24	ACP2 (ENSBBBG00000001605) #25	DDB2 (ENSBBBG00000007213) #26	PACSIN3 (ENSBBBG00000013420) #27	ARFGAP2 (ENSBBBG00000013487) #28	CSTPP1 (ENSBBBG00000013522) #29	LRP4 (ENSBBBG00000007215) #30	CKAP5 (ENSBBBG00000002889) #31	F2 (ENSBBBG00000002915) #32	ZNF408 (ENSBBBG00000013728) #33	ARHGAP1 (ENSBBBG00000013736) #34	ATG13 (ENSBBBG00000002985) #35	HARBI1 (ENSBBBG00000013882) #36	AMBRA1 (ENSBBBG00000014063) #37
Bos	ANCESTRAL SPECIES	25	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Bos_a	ANCESTRAL SPECIES	36	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00940000155097.e.a
Wild yak	MODERN SPECIES	1047						ENSBMUG00000024672	NDUFS3 (ENSBMUG00000024660) #14	KBTBD4 (ENSBMUG00000024643) #15	ENSBMUG00000024626 #16	CELF1 (ENSBMUG00000024594) #17	RAPSN (ENSBMUG00000024536) #18	PSMC3 (ENSBMUG00000024510) #19	SLC39A13 (ENSBMUG00000024475) #20	SPI1 (ENSBMUG00000024426) #21	MADD (ENSBMUG00000024292) #23	MYBPC3 (ENSBMUG00000023919) #22	NR1H3 (ENSBMUG00000023834) #24	ACP2 (ENSBMUG00000023770) #25	DDB2 (ENSBMUG00000023687) #26	PACSIN3 (ENSBMUG00000023616) #27	ARFGAP2 (ENSBMUG00000023585) #28	CSTPP1 (ENSBMUG00000023500) #29	LRP4 (ENSBMUG00000023473) #30	CKAP5 (ENSBMUG00000023430) #31	F2 (ENSBMUG00000023372) #32	ZNF408 (ENSBMUG00000023350) #33	ARHGAP1 (ENSBMUG00000023337) #34	ATG13 (ENSBMUG00000023285) #35	HARBI1 (ENSBMUG00000023163) #36	ENSBMUG00000023155	AMBRA1 (ENSBMUG00000023114) #37
Domestic yak	MODERN SPECIES	4	PTPRJ (ENSBGRG00000021865) #8	NUP160 (ENSBGRG00000020390) #9	FNBP4 (ENSBGRG00000020099) #10	AGBL2 (ENSBGRG00000019908) #11	MTCH2 (ENSBGRG00000019732) #12	ENSBGRG00000019699	FAM180B (ENSBGRG00000019645) #13	NDUFS3 (ENSBGRG00000019602) #14	KBTBD4 (ENSBGRG00000019526) #15	ENSBGRG00000019424 #16	CELF1 (ENSBGRG00000019052) #17	RAPSN (ENSBGRG00000018674) #18	PSMC3 (ENSBGRG00000018446) #19	SLC39A13 (ENSBGRG00000018326) #20	SPI1 (ENSBGRG00000018200) #21	MYBPC3 (ENSBGRG00000017872) #22	MADD (ENSBGRG00000017261) #23	NR1H3 (ENSBGRG00000016958) #24	ACP2 (ENSBGRG00000016478) #25	DDB2 (ENSBGRG00000016037) #26	PACSIN3 (ENSBGRG00000015878) #27	ARFGAP2 (ENSBGRG00000015155) #28	CSTPP1 (ENSBGRG00000014751) #29	LRP4 (ENSBGRG00000014275) #30	CKAP5 (ENSBGRG00000013953) #31	F2 (ENSBGRG00000013793) #32	ZNF408 (ENSBGRG00000013630) #33	ARHGAP1 (ENSBGRG00000013511) #34	ATG13 (ENSBGRG00000013263) #35	HARBI1 (ENSBGRG00000013222) #36	TAF9 (ENSBGRG00000013181)
Bos_b	ANCESTRAL SPECIES	12	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Cow	MODERN SPECIES	6	OR4B1 (ENSBTAG00000051670)	PTPRJ (ENSBTAG00000024715) #8	NUP160 (ENSBTAG00000021125) #9	FNBP4 (ENSBTAG00000020911) #10	AGBL2 (ENSBTAG00000051215) #11	MTCH2 (ENSBTAG00000018742) #12	FAM180B (ENSBTAG00000055123) #13	NDUFS3 (ENSBTAG00000018483) #14	KBTBD4 (ENSBTAG00000018482) #15	PTPMT1 (ENSBTAG00000018479) #16	CELF1 (ENSBTAG00000002520) #17	RAPSN (ENSBTAG00000021745) #18	PSMC3 (ENSBTAG00000021744) #19	SLC39A13 (ENSBTAG00000019436) #20	SPI1 (ENSBTAG00000021709) #21	MYBPC3 (ENSBTAG00000021707) #22	MADD (ENSBTAG00000021700) #23	NR1H3 (ENSBTAG00000010681) #24	ACP2 (ENSBTAG00000021002) #25	DDB2 (ENSBTAG00000020999) #26	PACSIN3 (ENSBTAG00000009576) #27	ARFGAP2 (ENSBTAG00000009574) #28	CSTPP1 (ENSBTAG00000009573) #29	LRP4 (ENSBTAG00000008429) #30	CKAP5 (ENSBTAG00000004448) #31	F2 (ENSBTAG00000007148) #32	ZNF408 (ENSBTAG00000027557) #33	ARHGAP1 (ENSBTAG00000016501) #34	ATG13 (ENSBTAG00000017325) #35	HARBI1 (ENSBTAG00000004639) #36	AMBRA1 (ENSBTAG00000004282) #37
Hybrid Bos Indicus	MODERN SPECIES	6	PTPRJ (ENSBIXG00005020754) #8	NUP160 (ENSBIXG00005020715) #9	NDUFS3 (ENSBIXG00005020641) #14	FNBP4 (ENSBIXG00005020572) #10	AGBL2 (ENSBIXG00005020494) #11	MTCH2 (ENSBIXG00005003456) #12	ENSBIXG00005020389	FAM180B (ENSBIXG00005020374) #13	KBTBD4 (ENSBIXG00005020354) #15	PTPMT1 (ENSBIXG00005007208) #16	CELF1 (ENSBIXG00005020290) #17	RAPSN (ENSBIXG00005003352) #18	PSMC3 (ENSBIXG00005020171) #19	SLC39A13 (ENSBIXG00005003304) #20	SPI1 (ENSBIXG00005020034) #21	MYBPC3 (ENSBIXG00005002636) #22	MADD (ENSBIXG00005003241) #23	NR1H3 (ENSBIXG00005019630) #24	ACP2 (ENSBIXG00005019552) #25	DDB2 (ENSBIXG00005019438) #26	PACSIN3 (ENSBIXG00005019375) #27	ARFGAP2 (ENSBIXG00005019318) #28	CSTPP1 (ENSBIXG00005019202) #29	LRP4 (ENSBIXG00005019152) #30	CKAP5 (ENSBIXG00005018988) #31	F2 (ENSBIXG00005018882) #32	ZNF408 (ENSBIXG00005018816) #33	ARHGAP1 (ENSBIXG00005003058) #34	ATG13 (ENSBIXG00005003045) #35	HARBI1 (ENSBIXG00005018637) #36	AMBRA1 (ENSBIXG00005007656) #37
Caprinae	ANCESTRAL SPECIES	6	ENSGT00940000157376	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Goat	MODERN SPECIES	6	ENSCHIG00000021050	NUP160 (ENSCHIG00000021564) #9	FNBP4 (ENSCHIG00000013162) #10	AGBL2 (ENSCHIG00000022131) #11	MTCH2 (ENSCHIG00000012614) #12	C1QTNF4 (ENSCHIG00000003743)	FAM180B (ENSCHIG00000011395) #13	NDUFS3 (ENSCHIG00000017760) #14	KBTBD4 (ENSCHIG00000016297) #15	PTPMT1 (ENSCHIG00000015788) #16	CELF1 (ENSCHIG00000024582) #17	RAPSN (ENSCHIG00000015950) #18	PSMC3 (ENSCHIG00000010249) #19	SLC39A13 (ENSCHIG00000018746) #20	SPI1 (ENSCHIG00000019747) #21	MYBPC3 (ENSCHIG00000021976) #22	MADD (ENSCHIG00000003140) #23	NR1H3 (ENSCHIG00000013751) #24	ACP2 (ENSCHIG00000017023) #25	DDB2 (ENSCHIG00000021645) #26	PACSIN3 (ENSCHIG00000007034) #27	ARFGAP2 (ENSCHIG00000003758) #28	CSTPP1 (ENSCHIG00000013768) #29	LRP4 (ENSCHIG00000024661) #30	CKAP5 (ENSCHIG00000018334) #31	ENSCHIG00000009743	F2 (ENSCHIG00000024270) #32	ZNF408 (ENSCHIG00000025346) #33	ARHGAP1 (ENSCHIG00000022137) #34	ATG13 (ENSCHIG00000014614) #35	HARBI1 (ENSCHIG00000014327) #36
Rambouillet Sheep	MODERN SPECIES	6	ENSOARG00020015421	NUP160 (ENSOARG00020015202) #9	FNBP4 (ENSOARG00020015042) #10	AGBL2 (ENSOARG00020014911) #11	MTCH2 (ENSOARG00020014843) #12	ENSOARG00020014813	FAM180B (ENSOARG00020014767) #13	NDUFS3 (ENSOARG00020014698) #14	ENSOARG00020014554 #15	ENSOARG00020014495 #16	CELF1 (ENSOARG00020014203) #17	RAPSN (ENSOARG00020013803) #18	PSMC3 (ENSOARG00020013548) #19	SLC39A13 (ENSOARG00020013213) #20	SPI1 (ENSOARG00020013137) #21	MYBPC3 (ENSOARG00020012776) #22	MADD (ENSOARG00020011512) #23	NR1H3 (ENSOARG00020011361) #24	ACP2 (ENSOARG00020010726) #25	DDB2 (ENSOARG00020010497) #26	PACSIN3 (ENSOARG00020010393) #27	ARFGAP2 (ENSOARG00020010021) #28	CSTPP1 (ENSOARG00020023714) #29	LRP4 (ENSOARG00020023551) #30	CKAP5 (ENSOARG00020023388) #31	F2 (ENSOARG00020023298) #32	ZNF408 (ENSOARG00020023273) #33	ARHGAP1 (ENSOARG00020023238) #34	ATG13 (ENSOARG00020023093) #35	HARBI1 (ENSOARG00020023065) #36	AMBRA1 (ENSOARG00020022829) #37
Siberian musk deer	MODERN SPECIES	118	NUP160 (ENSMMSG00000002340) #9	FNBP4 (ENSMMSG00000002398) #10	AGBL2 (ENSMMSG00000002474) #11	MTCH2 (ENSMMSG00000002552) #12	ENSMMSG00000002578	FAM180B (ENSMMSG00000002588) #13	NDUFS3 (ENSMMSG00000002602) #14	KBTBD4 (ENSMMSG00000002638) #15	PTPMT1 (ENSMMSG00000002650) #16	CELF1 (ENSMMSG00000005936) #17	ENSMMSG00000006034	RAPSN (ENSMMSG00000006063) #18	PSMC3 (ENSMMSG00000006116) #19	SLC39A13 (ENSMMSG00000006163) #20	SPI1 (ENSMMSG00000006220) #21	MYBPC3 (ENSMMSG00000006254) #22	MADD (ENSMMSG00000006433) #23	NR1H3 (ENSMMSG00000006800) #24	ACP2 (ENSMMSG00000006877) #25	DDB2 (ENSMMSG00000007023) #26	ENSMMSG00000007128	PACSIN3 (ENSMMSG00000007142) #27	ARFGAP2 (ENSMMSG00000007196) #28	CSTPP1 (ENSMMSG00000007479) #29	LRP4 (ENSMMSG00000007545) #30	CKAP5 (ENSMMSG00000007823) #31	F2 (ENSMMSG00000008000) #32	ZNF408 (ENSMMSG00000008033) #33	ARHGAP1 (ENSMMSG00000008062) #34	ATG13 (ENSMMSG00000008155) #35	HARBI1 (ENSMMSG00000008321) #36
Camelidae	ANCESTRAL SPECIES	25	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Arabian camel	MODERN SPECIES	1	PTPRJ (ENSCDRG00005001148) #8	NUP160 (ENSCDRG00005001484) #9	FNBP4 (ENSCDRG00005001528) #10	AGBL2 (ENSCDRG00005001568) #11	MTCH2 (ENSCDRG00005001631) #12	ENSCDRG00005001659	FAM180B (ENSCDRG00005001672) #13	NDUFS3 (ENSCDRG00005001699) #14	KBTBD4 (ENSCDRG00005001788) #15	PTPMT1 (ENSCDRG00005001832) #16	CELF1 (ENSCDRG00005001849) #17	RAPSN (ENSCDRG00005001888) #18	PSMC3 (ENSCDRG00005001939) #19	SLC39A13 (ENSCDRG00005001964) #20	SPI1 (ENSCDRG00005001988) #21	MYBPC3 (ENSCDRG00005002015) #22	MADD (ENSCDRG00005002594) #23	NR1H3 (ENSCDRG00005006795) #24	ACP2 (ENSCDRG00005006623) #25	DDB2 (ENSCDRG00005007029) #26	PACSIN3 (ENSCDRG00005007398) #27	ARFGAP2 (ENSCDRG00005007474) #28	CSTPP1 (ENSCDRG00005008190) #29	ENSCDRG00005008443	LRP4 (ENSCDRG00005008476) #30	CKAP5 (ENSCDRG00005008832) #31	F2 (ENSCDRG00005009091) #32	ZNF408 (ENSCDRG00005009244) #33	ARHGAP1 (ENSCDRG00005009320) #34	ATG13 (ENSCDRG00005009422) #35	HARBI1 (ENSCDRG00005009768) #36
Suina	ANCESTRAL SPECIES	34	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Chacoan peccary	MODERN SPECIES	919	NUP160 (ENSCWAG00000007529) #9	FNBP4 (ENSCWAG00000007691) #10	AGBL2 (ENSCWAG00000011756) #11	MTCH2 (ENSCWAG00000011837) #12	ENSCWAG00000011908	FAM180B (ENSCWAG00000011934) #13	NDUFS3 (ENSCWAG00000011975) #14	KBTBD4 (ENSCWAG00000012134) #15	PTPMT1 (ENSCWAG00000012300) #16	CELF1 (ENSCWAG00000012400) #17	RAPSN (ENSCWAG00000012571) #18	PSMC3 (ENSCWAG00000012918) #19	SLC39A13 (ENSCWAG00000013013) #20	ENSCWAG00000013126	SPI1 (ENSCWAG00000013165) #21	MYBPC3 (ENSCWAG00000013297) #22	MADD (ENSCWAG00000014593) #23	NR1H3 (ENSCWAG00000020217) #24	ACP2 (ENSCWAG00000020271) #25	DDB2 (ENSCWAG00000020312) #26	PACSIN3 (ENSCWAG00000020363) #27	ARFGAP2 (ENSCWAG00000020384) #28	CSTPP1 (ENSCWAG00000020423) #29	ENSCWAG00000020438	LRP4 (ENSCWAG00000020453) #30	CKAP5 (ENSCWAG00000020545) #31	F2 (ENSCWAG00000020586) #32	ZNF408 (ENSCWAG00000020629) #33	ARHGAP1 (ENSCWAG00000020638) #34	ATG13 (ENSCWAG00000020671) #35	HARBI1 (ENSCWAG00000020778) #36
Pig	MODERN SPECIES	10	PTPRJ (ENSSSCG00000023709) #8	ENSSSCG00000055325	NUP160 (ENSSSCG00000013223) #9	FNBP4 (ENSSSCG00000030610) #10	AGBL2 (ENSSSCG00000040838) #11	ENSSSCG00000013232 #12	C1QTNF4 (ENSSSCG00000013231)	FAM180B (ENSSSCG00000013230) #13	NDUFS3 (ENSSSCG00000032081) #14	KBTBD4 (ENSSSCG00000013227) #15	PTPMT1 (ENSSSCG00000013226) #16	CELF1 (ENSSSCG00000013233) #17	PSMC3 (ENSSSCG00000013239) #19	SLC39A13 (ENSSSCG00000013238) #20	SPI1 (ENSSSCG00000013237) #21	MYBPC3 (ENSSSCG00000013236) #22	MADD (ENSSSCG00000013235) #23	NR1H3 (ENSSSCG00000013241) #24	ACP2 (ENSSSCG00000013242) #25	DDB2 (ENSSSCG00000013243) #26	PACSIN3 (ENSSSCG00000013244) #27	ARFGAP2 (ENSSSCG00000013245) #28	CSTPP1 (ENSSSCG00000013246) #29	LRP4 (ENSSSCG00000013248) #30	CKAP5 (ENSSSCG00000013249) #31	ENSSSCG00000048195	F2 (ENSSSCG00000013252) #32	ZNF408 (ENSSSCG00000023097) #33	ARHGAP1 (ENSSSCG00000013256) #34	ATG13 (ENSSSCG00000013257) #35	HARBI1 (ENSSSCG00000013258) #36
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Carnivora	ANCESTRAL SPECIES	7	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Caniformia	ANCESTRAL SPECIES	25	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Canidae	ANCESTRAL SPECIES	13	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480.h #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480.h #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.u #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Dog	MODERN SPECIES	9	PTPRJ (ENSCAFG00845018509) #8	NUP160 (ENSCAFG00845019247) #9	FNBP4 (ENSCAFG00845019674) #10	AGBL2 (ENSCAFG00845019987) #11	ENSCAFG00845020290 #12	ENSCAFG00845020371	FAM180B (ENSCAFG00845020398) #13	ENSCAFG00845020432 #14	KBTBD4 (ENSCAFG00845020495) #15	PTPMT1 (ENSCAFG00845020551) #16	CELF1 (ENSCAFG00845020631) #17	RAPSN (ENSCAFG00845020952) #18	ENSCAFG00845021252 #19	SLC39A13 (ENSCAFG00845021469) #20	SPI1 (ENSCAFG00845021614) #21	MYBPC3 (ENSCAFG00845021902) #22	MADD (ENSCAFG00845023101) #23	NR1H3 (ENSCAFG00845024090) #24	ACP2 (ENSCAFG00845024517) #25	DDB2 (ENSCAFG00845024798) #26	PACSIN3 (ENSCAFG00845025012) #27	ARFGAP2 (ENSCAFG00845025262) #28	CSTPP1 (ENSCAFG00845025843) #29	LRP4 (ENSCAFG00845026118) #30	CKAP5 (ENSCAFG00845026513) #31	F2 (ENSCAFG00845026955) #32	ZNF408 (ENSCAFG00845027019) #33	ARHGAP1 (ENSCAFG00845027069) #34	ATG13 (ENSCAFG00845027292) #35	HARBI1 (ENSCAFG00845027517) #36	AMBRA1 (ENSCAFG00845027652) #37
Dingo	MODERN SPECIES	69	PTPRJ (ENSCAFG00020025691) #8	NUP160 (ENSCAFG00020025661) #9	FNBP4 (ENSCAFG00020025585) #10	AGBL2 (ENSCAFG00020025573) #11	MTCH2 (ENSCAFG00020025567) #12	C1QTNF4 (ENSCAFG00020025565)	FAM180B (ENSCAFG00020025564) #13	ENSCAFG00020025563 #14	KBTBD4 (ENSCAFG00020025561) #15	PTPMT1 (ENSCAFG00020025558) #16	CELF1 (ENSCAFG00020025487) #17	RAPSN (ENSCAFG00020025481) #18	ENSCAFG00020025479 #19	SLC39A13 (ENSCAFG00020025475) #20	SPI1 (ENSCAFG00020025473) #21	MYBPC3 (ENSCAFG00020025458) #22	MADD (ENSCAFG00020022385) #23	NR1H3 (ENSCAFG00020022209) #24	ACP2 (ENSCAFG00020022205) #25	DDB2 (ENSCAFG00020022201) #26	PACSIN3 (ENSCAFG00020022195) #27	ARFGAP2 (ENSCAFG00020022191) #28	CSTPP1 (ENSCAFG00020022185) #29	LRP4 (ENSCAFG00020022152) #30	CKAP5 (ENSCAFG00020019305) #31	F2 (ENSCAFG00020019158) #32	ZNF408 (ENSCAFG00020019155) #33	ARHGAP1 (ENSCAFG00020019150) #34	ATG13 (ENSCAFG00020019142) #35	HARBI1 (ENSCAFG00020019139) #36	AMBRA1 (ENSCAFG00020019116) #37
Red fox	MODERN SPECIES	49	ENSVVUG00000022712	PTPRJ (ENSVVUG00000022729) #8	NUP160 (ENSVVUG00000023082) #9	FNBP4 (ENSVVUG00000023114) #10	AGBL2 (ENSVVUG00000023154) #11	MTCH2 (ENSVVUG00000023181) #12	KBTBD4 (ENSVVUG00000023426) #15	ENSVVUG00000023430	NDUFS3 (ENSVVUG00000023433) #14	PTPMT1 (ENSVVUG00000023435) #16	CELF1 (ENSVVUG00000023439) #17	RAPSN (ENSVVUG00000023449) #18	PSMC3 (ENSVVUG00000023452) #19	SLC39A13 (ENSVVUG00000023457) #20	SPI1 (ENSVVUG00000023463) #21	MYBPC3 (ENSVVUG00000023562) #22	MADD (ENSVVUG00000025425) #23	NR1H3 (ENSVVUG00000026170) #24	ACP2 (ENSVVUG00000026189) #25	DDB2 (ENSVVUG00000026319) #26	PACSIN3 (ENSVVUG00000026352) #27	ARFGAP2 (ENSVVUG00000026397) #28	CSTPP1 (ENSVVUG00000026503) #29	LRP4 (ENSVVUG00000026554) #30	CKAP5 (ENSVVUG00000026762) #31	F2 (ENSVVUG00000026767) #32	ZNF408 (ENSVVUG00000026805) #33	ARHGAP1 (ENSVVUG00000026807) #34	ATG13 (ENSVVUG00000026821) #35	HARBI1 (ENSVVUG00000026967) #36	AMBRA1 (ENSVVUG00000026969) #37
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Ursidae	ANCESTRAL SPECIES	2	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
Ursus	ANCESTRAL SPECIES	85	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00910000148141
American black bear	MODERN SPECIES	6689															SPI1 (ENSUAMG00000014979) #21	MYBPC3 (ENSUAMG00000014924) #22	ENSUAMG00000006744 #23
Polar bear	MODERN SPECIES	229	ENSUMAG00000008651	PTPRJ (ENSUMAG00000008683) #8	NUP160 (ENSUMAG00000008983) #9	FNBP4 (ENSUMAG00000009092) #10	AGBL2 (ENSUMAG00000009098) #11	MTCH2 (ENSUMAG00000009168) #12	FAM180B (ENSUMAG00000009202) #13	NDUFS3 (ENSUMAG00000009205) #14	KBTBD4 (ENSUMAG00000009210) #15	PTPMT1 (ENSUMAG00000009215) #16	CELF1 (ENSUMAG00000009218) #17	RAPSN (ENSUMAG00000009220) #18	PSMC3 (ENSUMAG00000009232) #19	SLC39A13 (ENSUMAG00000009241) #20	SPI1 (ENSUMAG00000009255) #21	MYBPC3 (ENSUMAG00000009303) #22	MADD (ENSUMAG00000009893) #23	NR1H3 (ENSUMAG00000014293) #24	ACP2 (ENSUMAG00000014297) #25	DDB2 (ENSUMAG00000014299) #26	PACSIN3 (ENSUMAG00000014303) #27	ARFGAP2 (ENSUMAG00000014307) #28	CSTPP1 (ENSUMAG00000014321) #29	LRP4 (ENSUMAG00000014330) #30	CKAP5 (ENSUMAG00000014345) #31	F2 (ENSUMAG00000014382) #32	ZNF408 (ENSUMAG00000014405) #33	ARHGAP1 (ENSUMAG00000014408) #34	ATG13 (ENSUMAG00000014415) #35	HARBI1 (ENSUMAG00000014427) #36	AMBRA1 (ENSUMAG00000014438) #37
Giant Panda	MODERN SPECIES	7	ENSAMEG00000018704	NUP160 (ENSAMEG00000005149) #9	FNBP4 (ENSAMEG00000007789) #10	AGBL2 (ENSAMEG00000007763) #11	MTCH2 (ENSAMEG00000007696) #12	ENSAMEG00000007688	FAM180B (ENSAMEG00000007683) #13	NDUFS3 (ENSAMEG00000007649) #14	KBTBD4 (ENSAMEG00000007634) #15	PTPMT1 (ENSAMEG00000007624) #16	CELF1 (ENSAMEG00000007596) #17	RAPSN (ENSAMEG00000007575) #18	PSMC3 (ENSAMEG00000007538) #19	SLC39A13 (ENSAMEG00000007505) #20	SPI1 (ENSAMEG00000030284) #21	MYBPC3 (ENSAMEG00000007362) #22	MADD (ENSAMEG00000007321) #23	NR1H3 (ENSAMEG00000007298) #24	ACP2 (ENSAMEG00000007273) #25	DDB2 (ENSAMEG00000007255) #26	PACSIN3 (ENSAMEG00000007225) #27	ARFGAP2 (ENSAMEG00000007175) #28	CSTPP1 (ENSAMEG00000007146) #29	LRP4 (ENSAMEG00000007069) #30	CKAP5 (ENSAMEG00000006979) #31	F2 (ENSAMEG00000006910) #32	ZNF408 (ENSAMEG00000006904) #33	ARHGAP1 (ENSAMEG00000006844) #34	ATG13 (ENSAMEG00000006798) #35	HARBI1 (ENSAMEG00000006795) #36	ENSAMEG00000023608
Mustelinae	ANCESTRAL SPECIES	74	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Ferret	MODERN SPECIES	255	PTPRJ (ENSMPUG00000003626) #8	NUP160 (ENSMPUG00000003687) #9	FNBP4 (ENSMPUG00000003831) #10	AGBL2 (ENSMPUG00000003840) #11	MTCH2 (ENSMPUG00000003852) #12	C1QTNF4 (ENSMPUG00000003861)	FAM180B (ENSMPUG00000003869) #13	NDUFS3 (ENSMPUG00000003880) #14	KBTBD4 (ENSMPUG00000003932) #15	PTPMT1 (ENSMPUG00000003938) #16	CELF1 (ENSMPUG00000003960) #17	RAPSN (ENSMPUG00000003974) #18	SLC39A13 (ENSMPUG00000003979) #20	PSMC3 (ENSMPUG00000003992) #19	SPI1 (ENSMPUG00000004125) #21	MYBPC3 (ENSMPUG00000004128) #22	MADD (ENSMPUG00000004775) #23	NR1H3 (ENSMPUG00000004787) #24	ACP2 (ENSMPUG00000004871) #25	DDB2 (ENSMPUG00000004880) #26	PACSIN3 (ENSMPUG00000004892) #27	ARFGAP2 (ENSMPUG00000005012) #28	CSTPP1 (ENSMPUG00000005029) #29	LRP4 (ENSMPUG00000005034) #30	CKAP5 (ENSMPUG00000005279) #31	F2 (ENSMPUG00000005310) #32	ZNF408 (ENSMPUG00000005490) #33	ARHGAP1 (ENSMPUG00000005499) #34	ATG13 (ENSMPUG00000005512) #35	HARBI1 (ENSMPUG00000005540) #36	AMBRA1 (ENSMPUG00000005552) #37
American mink	MODERN SPECIES	45	PTPRJ (ENSNVIG00000008832) #8	NUP160 (ENSNVIG00000009292) #9	FNBP4 (ENSNVIG00000009890) #10	AGBL2 (ENSNVIG00000009947) #11	MTCH2 (ENSNVIG00000010063) #12	C1QTNF4 (ENSNVIG00000010108)	FAM180B (ENSNVIG00000010117) #13	NDUFS3 (ENSNVIG00000010127) #14	KBTB4 (ENSNVIG00000010139) #15	PTPMT1 (ENSNVIG00000010173) #16	CELF1 (ENSNVIG00000010227) #17	RAPSN (ENSNVIG00000010353) #18	PSMC3 (ENSNVIG00000010384) #19	SLC39A13 (ENSNVIG00000010448) #20	SPI1 (ENSNVIG00000010511) #21	MYBPC3 (ENSNVIG00000010535) #22	MADD (ENSNVIG00000010799) #23	NR1H3 (ENSNVIG00000011492) #24	ACP2 (ENSNVIG00000011563) #25	DDB2 (ENSNVIG00000011648) #26	PACSIN3 (ENSNVIG00000011680) #27	ARFGAP2 (ENSNVIG00000011708) #28	CK049 (ENSNVIG00000011836) #29	LRP4 (ENSNVIG00000011939) #30	CKAP5 (ENSNVIG00000012011) #31	F2 (ENSNVIG00000012216) #32	ZNF408 (ENSNVIG00000012294) #33	ATG13 (ENSNVIG00000012327) #35	HARB1 (ENSNVIG00000012442) #36	AMBRA1 (ENSNVIG00000012478) #37	CHRM4 (ENSNVIG00000012697)
Felidae	ANCESTRAL SPECIES		ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00500000045038.m.a.a	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Panthera	ANCESTRAL SPECIES	13	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00500000045038.m.a.a	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Panthera_a	ANCESTRAL SPECIES	20	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00500000045038.m.a.a	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
leopard	MODERN SPECIES	58	PTPRJ (ENSPPRG00000022122) #8	NUP160 (ENSPPRG00000025052) #9	FNBP4 (ENSPPRG00000024996) #10	AGBL2 (ENSPPRG00000024671) #11	MTCH2 (ENSPPRG00000024284) #12	ENSPPRG00000024156	FAM180B (ENSPPRG00000024070) #13	NDUFS3 (ENSPPRG00000023580) #14	KBTBD4 (ENSPPRG00000022635) #15	PTPMT1 (ENSPPRG00000000430) #16	CELF1 (ENSPPRG00000002376) #17	RAPSN (ENSPPRG00000004770) #18	PSMC3 (ENSPPRG00000006737) #19	SLC39A13 (ENSPPRG00000009592) #20	SPI1 (ENSPPRG00000010085) #21	MYBPC3 (ENSPPRG00000024064) #22	MADD (ENSPPRG00000000412) #23	NR1H3 (ENSPPRG00000002008) #24	ACP2 (ENSPPRG00000004019) #25	DDB2 (ENSPPRG00000005739) #26	PACSIN3 (ENSPPRG00000005994) #27	ARFGAP2 (ENSPPRG00000007483) #28	CSTPP1 (ENSPPRG00000008841) #29	LRP4 (ENSPPRG00000009649) #30	CKAP5 (ENSPPRG00000014495) #31	F2 (ENSPPRG00000015996) #32	ENSPPRG00000021564	ZNF408 (ENSPPRG00000016866) #33	ARHGAP1 (ENSPPRG00000017517) #34	ATG13 (ENSPPRG00000024435) #35	HARBI1 (ENSPPRG00000024315) #36
lion	MODERN SPECIES	10	PTPRJ (ENSPLOG00000008520) #8	NUP160 (ENSPLOG00000008133) #9	FNBP4 (ENSPLOG00000008066) #10	AGBL2 (ENSPLOG00000007789) #11	MTCH2 (ENSPLOG00000007733) #12	ENSPLOG00000007716	FAM180B (ENSPLOG00000007697) #13	NDUFS3 (ENSPLOG00000007679) #14	KBTBD4 (ENSPLOG00000007653) #15	ENSPLOG00000007621	CELF1 (ENSPLOG00000007570) #17	RAPSN (ENSPLOG00000007427) #18	PSMC3 (ENSPLOG00000007292) #19	SLC39A13 (ENSPLOG00000007161) #20	SPI1 (ENSPLOG00000007099) #21	MYBPC3 (ENSPLOG00000006845) #22	MADD (ENSPLOG00000006666) #23	NR1H3 (ENSPLOG00000006535) #24	ACP2 (ENSPLOG00000006391) #25	DDB2 (ENSPLOG00000006264) #26	PACSIN3 (ENSPLOG00000006189) #27	ARFGAP2 (ENSPLOG00000006001) #28	CSTPP1 (ENSPLOG00000005860) #29	LRP4 (ENSPLOG00000005745) #30	CKAP5 (ENSPLOG00000005671) #31	F2 (ENSPLOG00000005576) #32	ENSPLOG00000005532	ZNF408 (ENSPLOG00000005509) #33	ARHGAP1 (ENSPLOG00000005477) #34	ATG13 (ENSPLOG00000005426) #35	HARBI1 (ENSPLOG00000005373) #36
Tiger	MODERN SPECIES	168	OR4B1 (ENSPTIG00000010088)	PTPRJ (ENSPTIG00000009161) #8	NUP160 (ENSPTIG00000008790) #9	FNBP4 (ENSPTIG00000008430) #10	AGBL2 (ENSPTIG00000007694) #11	MTCH2 (ENSPTIG00000007190) #12	FAM180B (ENSPTIG00000007108) #13	NDUFS3 (ENSPTIG00000006928) #14	KBTBD4 (ENSPTIG00000006244) #15	PTPMT1 (ENSPTIG00000005838) #16	CELF1 (ENSPTIG00000003974) #17	RAPSN (ENSPTIG00000000869) #18	PSMC3 (ENSPTIG00000021263) #19	SLC39A13 (ENSPTIG00000021132) #20	SPI1 (ENSPTIG00000020982) #21	MYBPC3 (ENSPTIG00000020596) #22	MADD (ENSPTIG00000018995) #23	NR1H3 (ENSPTIG00000018538) #24	ACP2 (ENSPTIG00000018036) #25	DDB2 (ENSPTIG00000017739) #26	PACSIN3 (ENSPTIG00000017528) #27	ARFGAP2 (ENSPTIG00000017136) #28	CSTPP1 (ENSPTIG00000016931) #29	LRP4 (ENSPTIG00000016819) #30	CKAP5 (ENSPTIG00000015717) #31	F2 (ENSPTIG00000015545) #32	ZNF408 (ENSPTIG00000015467) #33	ARHGAP1 (ENSPTIG00000014598) #34	ATG13 (ENSPTIG00000014275) #35	HARBI1 (ENSPTIG00000014054) #36	AMBRA1 (ENSPTIG00000013363) #37
Cat	MODERN SPECIES	241	PTPRJ (ENSFCAG00000004667) #8	NUP160 (ENSFCAG00000013806) #9	FNBP4 (ENSFCAG00000013805) #10	AGBL2 (ENSFCAG00000013803) #11	MTCH2 (ENSFCAG00000022906) #12	C1QTNF4 (ENSFCAG00000035523)	FAM180B (ENSFCAG00000009508) #13	NDUFS3 (ENSFCAG00000040734) #14	KBTBD4 (ENSFCAG00000009499) #15	ENSFCAG00000042609	CELF1 (ENSFCAG00000002535) #17	RAPSN (ENSFCAG00000002534) #18	PSMC3 (ENSFCAG00000002533) #19	SLC39A13 (ENSFCAG00000002532) #20	SPI1 (ENSFCAG00000002531) #21	MYBPC3 (ENSFCAG00000002530) #22	MADD (ENSFCAG00000002529) #23	NR1H3 (ENSFCAG00000002528) #24	ACP2 (ENSFCAG00000002527) #25	DDB2 (ENSFCAG00000025016) #26	PACSIN3 (ENSFCAG00000012631) #27	ARFGAP2 (ENSFCAG00000002525) #28	CSTPP1 (ENSFCAG00000002524) #29	LRP4 (ENSFCAG00000002523) #30	CKAP5 (ENSFCAG00000013640) #31	F2 (ENSFCAG00000029088) #32	ENSFCAG00000041074	ZNF408 (ENSFCAG00000029105) #33	ARHGAP1 (ENSFCAG00000013638) #34	ATG13 (ENSFCAG00000013637) #35	HARBI1 (ENSFCAG00000029910) #36
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Equus	ANCESTRAL SPECIES	56	ENSGT00940000158345.lb #7	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000158775 #15	ENSGT00940000154479.a #13	ENSGT00390000017480.e #14	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Donkey	MODERN SPECIES	8	ENSEASG00005011732 #7	PTPRJ (ENSEASG00005011324) #8	NUP160 (ENSEASG00005011017) #9	FNBP4 (ENSEASG00005010995) #10	AGBL2 (ENSEASG00005010911) #11	MTCH2 (ENSEASG00005010837) #12	FAM180B (ENSEASG00005035695) #13	ENSEASG00005010834 #14	KBTBD4 (ENSEASG00005031390) #15	PTPMT1 (ENSEASG00005037371) #16	CELF1 (ENSEASG00005010831) #17	RAPSN (ENSEASG00005010830) #18	PSMC3 (ENSEASG00005010810) #19	SLC39A13 (ENSEASG00005010790) #20	SPI1 (ENSEASG00005010780) #21	MYBPC3 (ENSEASG00005010750) #22	MADD (ENSEASG00005002251) #23	NR1H3 (ENSEASG00005001479) #24	ACP2 (ENSEASG00005001161) #25	DDB2 (ENSEASG00005001051) #26	PACSIN3 (ENSEASG00005000908) #27	ARFGAP2 (ENSEASG00005000180) #28	CSTPP1 (ENSEASG00005017823) #29	LRP4 (ENSEASG00005017791) #30	CKAP5 (ENSEASG00005015601) #31	F2 (ENSEASG00005015463) #32	ZNF408 (ENSEASG00005015461) #33	ARHGAP1 (ENSEASG00005015450) #34	ATG13 (ENSEASG00005015246) #35	HARBI1 (ENSEASG00005015208) #36	AMBRA1 (ENSEASG00005015004) #37
Horse	MODERN SPECIES	3	ENSECAG00000038836 #8	ENSECAG00000040129 #8	ENSECAG00000034219 #8	NUP160 (ENSECAG00000021826) #9	FNBP4 (ENSECAG00000020072) #10	AGBL2 (ENSECAG00000018720) #11	MTCH2 (ENSECAG00000014198) #12	NDUFS3 (ENSECAG00000013454) #14	KBTBD4 (ENSECAG00000013258) #15	PTPMT1 (ENSECAG00000012816) #16	CELF1 (ENSECAG00000007741) #17	RAPSN (ENSECAG00000003289) #18	PSMC3 (ENSECAG00000024786) #19	SLC39A13 (ENSECAG00000024590) #20	SPI1 (ENSECAG00000024457) #21	MYBPC3 (ENSECAG00000024318) #22	MADD (ENSECAG00000016022) #23	NR1H3 (ENSECAG00000015726) #24	ACP2 (ENSECAG00000013128) #25	DDB2 (ENSECAG00000008711) #26	PACSIN3 (ENSECAG00000025103) #27	ARFGAP2 (ENSECAG00000024744) #28	ENSECAG00000051919	CSTPP1 (ENSECAG00000024739) #29	LRP4 (ENSECAG00000023663) #30	CKAP5 (ENSECAG00000015563) #31	F2 (ENSECAG00000011321) #32	ZNF408 (ENSECAG00000010878) #33	ARHGAP1 (ENSECAG00000009844) #34	ATG13 (ENSECAG00000024606) #35	HARBI1 (ENSECAG00000024452) #36
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065.f #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Megabat	MODERN SPECIES	646						MTCH2 (ENSPVAG00000007348) #12	FAM180B (ENSPVAG00000007346) #13	NDUFS3 (ENSPVAG00000007344) #14	KBTBD4 (ENSPVAG00000007342) #15	PTPMT1 (ENSPVAG00000007341) #16	CELF1 (ENSPVAG00000007340) #17	RAPSN (ENSPVAG00000007339) #18	PSMC3 (ENSPVAG00000007338) #19	SLC39A13 (ENSPVAG00000007337) #20	SPI1 (ENSPVAG00000007336) #21	MYBPC3 (ENSPVAG00000007332) #22	MADD (ENSPVAG00000007324) #23	NR1H3 (ENSPVAG00000007321) #24	ACP2 (ENSPVAG00000007314) #25	DDB2 (ENSPVAG00000007310) #26
Microchiroptera	ANCESTRAL SPECIES	31	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065.f #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Microbat	MODERN SPECIES	1034	OR4C12 (ENSMLUG00000006753)	OR4C5 (ENSMLUG00000030715)	OR4S1 (ENSMLUG00000009795)	PTPRJ (ENSMLUG00000013225) #8	NUP160 (ENSMLUG00000014062) #9	FNBP4 (ENSMLUG00000011388) #10	MTCH2 (ENSMLUG00000016431) #12	FAM180B (ENSMLUG00000016658) #13	NDUFS3 (ENSMLUG00000016649) #14	KBTBD4 (ENSMLUG00000006745) #15	ENSMLUG00000024269 #16	CELF1 (ENSMLUG00000016631) #17	ENSMLUG00000016626 #18	PSMC3 (ENSMLUG00000016615) #19	SLC39A13 (ENSMLUG00000016608) #20	MYBPC3 (ENSMLUG00000017650) #22	MADD (ENSMLUG00000017647) #23	NR1H3 (ENSMLUG00000017646) #24	ACP2 (ENSMLUG00000017644) #25	DDB2 (ENSMLUG00000017642) #26	PACSIN3 (ENSMLUG00000017640) #27	ARFGAP2 (ENSMLUG00000017637) #28	CSTPP1 (ENSMLUG00000017636) #29	LRP4 (ENSMLUG00000017635) #30	CKAP5 (ENSMLUG00000017633) #31	F2 (ENSMLUG00000017631) #32	ZNF408 (ENSMLUG00000017629) #33	ARHGAP1 (ENSMLUG00000017628) #34	ATG13 (ENSMLUG00000017626) #35	HARBI1 (ENSMLUG00000011485) #36	AMBRA1 (ENSMLUG00000009880) #37
Greater horseshoe bat	MODERN SPECIES	2	FNBP4 (ENSRFEG00010011687) #10	AGBL2 (ENSRFEG00010011739) #11	ENSRFEG00010011838	ENSRFEG00010011881	MTCH2 (ENSRFEG00010011915) #12	ENSRFEG00010011954	FAM180B (ENSRFEG00010011984) #13	NDUFS3 (ENSRFEG00010012038) #14	KBTBD4 (ENSRFEG00010012114) #15	PTPMT1 (ENSRFEG00010012248) #16	CELF1 (ENSRFEG00010012300) #17	RAPSN (ENSRFEG00010012492) #18	PSMC3 (ENSRFEG00010012635) #19	SLC39A13 (ENSRFEG00010012772) #20	SPI1 (ENSRFEG00010012946) #21	MYBPC3 (ENSRFEG00010013106) #22	MADD (ENSRFEG00010014628) #23	NR1H3 (ENSRFEG00010015025) #24	ACP2 (ENSRFEG00010015250) #25	DDB2 (ENSRFEG00010015496) #26	PACSIN3 (ENSRFEG00010000575) #27	ARFGAP2 (ENSRFEG00010000701) #28	CSTPP1 (ENSRFEG00010000992) #29	LRP4 (ENSRFEG00010001046) #30	CKAP5 (ENSRFEG00010001142) #31	F2 (ENSRFEG00010001400) #32	ZNF408 (ENSRFEG00010001453) #33	ARHGAP1 (ENSRFEG00010001486) #34	ATG13 (ENSRFEG00010001557) #35	HARBI1 (ENSRFEG00010001682) #36	AMBRA1 (ENSRFEG00010001788) #37
Atlantogenata	ANCESTRAL SPECIES	13	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Xenarthra	ANCESTRAL SPECIES	19	ENSGT00940000158345 #7	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37	ENSGT00940000160394.a
Armadillo	MODERN SPECIES	1506	ENSDNOG00000040753	PTPRJ (ENSDNOG00000010565) #8	NUP160 (ENSDNOG00000043513) #9	FNBP4 (ENSDNOG00000013302) #10	AGBL2 (ENSDNOG00000013277) #11	C1QTNF4 (ENSDNOG00000041468)	FAM180B (ENSDNOG00000009566) #13	NDUFS3 (ENSDNOG00000009548) #14	KBTBD4 (ENSDNOG00000009543) #15	ENSDNOG00000025849 #16	CELF1 (ENSDNOG00000009523) #17	RAPSN (ENSDNOG00000040969) #18	PSMC3 (ENSDNOG00000033470) #19	SLC39A13 (ENSDNOG00000018463) #20	SPI1 (ENSDNOG00000041462) #21	MYBPC3 (ENSDNOG00000042129) #22	MADD (ENSDNOG00000011229) #23	NR1H3 (ENSDNOG00000011206) #24	ACP2 (ENSDNOG00000044310) #25	PACSIN3 (ENSDNOG00000030783) #27	ENSDNOG00000019820 #28	ENSDNOG00000038982	CSTPP1 (ENSDNOG00000019818) #29	LRP4 (ENSDNOG00000019816) #30	CKAP5 (ENSDNOG00000012007) #31	F2 (ENSDNOG00000012528) #32	ZNF408 (ENSDNOG00000047669) #33	ARHGAP1 (ENSDNOG00000017314) #34	ATG13 (ENSDNOG00000002084) #35	HARBI1 (ENSDNOG00000002083) #36	ENSDNOG00000049497
Afrotheria	ANCESTRAL SPECIES	16	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Tenrec	MODERN SPECIES	5841															ENSETEG00000000432 #21	MYBPC3 (ENSETEG00000000425) #22	MADD (ENSETEG00000000419) #23	NR1H3 (ENSETEG00000000415) #24	ACP2 (ENSETEG00000000413) #25	DDB2 (ENSETEG00000000408) #26
Afrotheria_a	ANCESTRAL SPECIES	17	ENSGT00940000163951	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000154234.b #32	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Hyrax	MODERN SPECIES	3657															SPI1 (ENSPCAG00000016572) #21	MYBPC3 (ENSPCAG00000016433) #22	MADD (ENSPCAG00000016258) #23	NR1H3 (ENSPCAG00000016194) #24	ACP2 (ENSPCAG00000016140) #25	DDB2 (ENSPCAG00000016073) #26	PACSIN3 (ENSPCAG00000015992) #27	ARFGAP2 (ENSPCAG00000015888) #28	CSTPP1 (ENSPCAG00000015812) #29
Elephant	MODERN SPECIES	209	PTPRJ (ENSLAFG00000026310) #8	ENSLAFG00000032365	NUP160 (ENSLAFG00000015258) #9	FNBP4 (ENSLAFG00000015244) #10	AGBL2 (ENSLAFG00000015233) #11	MTCH2 (ENSLAFG00000017949) #12	C1QTNF4 (ENSLAFG00000017947)	NDUFS3 (ENSLAFG00000017939) #14	KBTBD4 (ENSLAFG00000017937) #15	PTPMT1 (ENSLAFG00000020874) #16	CELF1 (ENSLAFG00000003484) #17	RAPSN (ENSLAFG00000016010) #18	PSMC3 (ENSLAFG00000032142) #19	SLC39A13 (ENSLAFG00000015999) #20	SPI1 (ENSLAFG00000004062) #21	MYBPC3 (ENSLAFG00000031033) #22	MADD (ENSLAFG00000009270) #23	NR1H3 (ENSLAFG00000009267) #24	ACP2 (ENSLAFG00000025658) #25	DDB2 (ENSLAFG00000009262) #26	PACSIN3 (ENSLAFG00000016193) #27	ARFGAP2 (ENSLAFG00000013742) #28	CSTPP1 (ENSLAFG00000013736) #29	LRP4 (ENSLAFG00000013726) #30	CKAP5 (ENSLAFG00000010386) #31	F2 (ENSLAFG00000010383) #32	ZNF408 (ENSLAFG00000027848) #33	ARHGAP1 (ENSLAFG00000015141) #34	ATG13 (ENSLAFG00000015138) #35	HARBI1 (ENSLAFG00000032359) #36	ENSLAFG00000015123 #37
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.w.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.w.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37	ENSGT00940000160394.a
Diprotodontia	ANCESTRAL SPECIES	46	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.w.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37	ENSGT00940000160394.a
Diprotodontia_a	ANCESTRAL SPECIES	46	ENSGT00940000156870 #8	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E.w.a #19	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37	ENSGT00940000160394.a
koala	MODERN SPECIES	139	OR4B1 (ENSPCIG00000033399)	PTPRJ (ENSPCIG00000012911) #8	ENSPCIG00000012927 #9	AGBL2 (ENSPCIG00000016171) #11	MTCH2 (ENSPCIG00000016519) #12	ENSPCIG00000016521	ENSPCIG00000037012 #13	NDUFS3 (ENSPCIG00000016526) #14	KBTBD4 (ENSPCIG00000016600) #15	ENSPCIG00000016602 #16	CELF1 (ENSPCIG00000022947) #17	RAPSN (ENSPCIG00000022952) #18	PSMC3 (ENSPCIG00000007254) #19	SLC39A13 (ENSPCIG00000007257) #20	SPI1 (ENSPCIG00000007258) #21	MYBPC3 (ENSPCIG00000007264) #22	MADD (ENSPCIG00000007278) #23	NR1H3 (ENSPCIG00000007281) #24	ACP2 (ENSPCIG00000007284) #25	DDB2 (ENSPCIG00000007289) #26	PACSIN3 (ENSPCIG00000007325) #27	ARFGAP2 (ENSPCIG00000007326) #28	CSTPP1 (ENSPCIG00000007328) #29	LRP4 (ENSPCIG00000007330) #30	CKAP5 (ENSPCIG00000007436) #31	ENSPCIG00000020069	ARHGAP1 (ENSPCIG00000020071) #34	ATG13 (ENSPCIG00000020075) #35	HARBI1 (ENSPCIG00000020090) #36	AMBRA1 (ENSPCIG00000020093) #37	CHRM4 (ENSPCIG00000020098)
Common wonbat	MODERN SPECIES	1058	PTPRJ (ENSVURG00010009072) #8	NUP160 (ENSVURG00010009694) #9	FNBP4 (ENSVURG00010009715) #10	AGBL2 (ENSVURG00010009724) #11	MTCH2 (ENSVURG00010009735) #12	ENSVURG00010009744	ENSVURG00010009751 #13	NDUFS3 (ENSVURG00010009759) #14	KBTBD4 (ENSVURG00010009776) #15	ENSVURG00010009789 #16	CELF1 (ENSVURG00010009795) #17	RAPSN (ENSVURG00010009821) #18	ENSVURG00010009856 #19	SLC39A13 (ENSVURG00010009882) #20	SPI1 (ENSVURG00010009914) #21	MYBPC3 (ENSVURG00010009939) #22	MADD (ENSVURG00010010013) #23	NR1H3 (ENSVURG00010010094) #24	ACP2 (ENSVURG00010010120) #25	DDB2 (ENSVURG00010010162) #26	PACSIN3 (ENSVURG00010010192) #27	ARFGAP2 (ENSVURG00010010235) #28	CSTPP1 (ENSVURG00010010291) #29	LRP4 (ENSVURG00010010304) #30	CKAP5 (ENSVURG00010010351) #31	ARHGAP1 (ENSVURG00010010440) #34	ATG13 (ENSVURG00010010461) #35	HARBI1 (ENSVURG00010010503) #36	AMBRA1 (ENSVURG00010010523) #37	CHRM4 (ENSVURG00010010600)	MDK (ENSVURG00010010613)
Wallaby	MODERN SPECIES	4022																MYBPC3 (ENSMEUG00000006402) #22
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000023502	NUP160 (ENSSHAG00000017792) #9	FNBP4 (ENSSHAG00000017752) #10	AGBL2 (ENSSHAG00000027609) #11	MTCH2 (ENSSHAG00000017622) #12	C1QTNF4 (ENSSHAG00000030434)	ENSSHAG00000026627 #13	NDUFS3 (ENSSHAG00000025275) #14	KBTBD4 (ENSSHAG00000021528) #15	ENSSHAG00000024403 #16	CELF1 (ENSSHAG00000017438) #17	RAPSN (ENSSHAG00000017408) #18	PSMC3 (ENSSHAG00000017393) #19	SLC39A13 (ENSSHAG00000017377) #20	SPI1 (ENSSHAG00000017291) #21	MYBPC3 (ENSSHAG00000017252) #22	NR1H3 (ENSSHAG00000017152) #24	MADD (ENSSHAG00000017189) #23	ACP2 (ENSSHAG00000017126) #25	DDB2 (ENSSHAG00000017108) #26	PACSIN3 (ENSSHAG00000017065) #27	ENSSHAG00000023512 #28	CSTPP1 (ENSSHAG00000032264) #29	LRP4 (ENSSHAG00000016580) #30	CKAP5 (ENSSHAG00000016386) #31	ENSSHAG00000016366	ARHGAP1 (ENSSHAG00000016324) #34	HARBI1 (ENSSHAG00000016218) #36	ATG13 (ENSSHAG00000016284) #35	AMBRA1 (ENSSHAG00000015742) #37	ENSSHAG00000030675
Opossum	MODERN SPECIES	4	ENSMODG00000024412	ENSMODG00000019925 #8	NUP160 (ENSMODG00000019923) #9	FNBP4 (ENSMODG00000019921) #10	AGBL2 (ENSMODG00000019920) #11	MTCH2 (ENSMODG00000019919) #12	ENSMODG00000024428 #13	ENSMODG00000019916 #14	KBTBD4 (ENSMODG00000019915) #15	ENSMODG00000019914 #16	CELF1 (ENSMODG00000019913) #17	RAPSN (ENSMODG00000041760) #18	ENSMODG00000019911 #19	SLC39A13 (ENSMODG00000019910) #20	SPI1 (ENSMODG00000019909) #21	MYBPC3 (ENSMODG00000019908) #22	MADD (ENSMODG00000019907) #23	NR1H3 (ENSMODG00000019906) #24	ACP2 (ENSMODG00000019905) #25	ENSMODG00000019904 #26	PACSIN3 (ENSMODG00000019903) #27	ARFGAP2 (ENSMODG00000019901) #28	CSTPP1 (ENSMODG00000019899) #29	ENSMODG00000019900	LRP4 (ENSMODG00000019898) #30	CKAP5 (ENSMODG00000019897) #31	ENSMODG00000019896	ZNF408 (ENSMODG00000019895) #33	ARHGAP1 (ENSMODG00000019894) #34	ATG13 (ENSMODG00000019893) #35	HARBI1 (ENSMODG00000019892) #36
Platypus	MODERN SPECIES	14	ENSOANG00000007913	PTPRJ (ENSOANG00000007912) #8	NUP160 (ENSOANG00000007911) #9	FNBP4 (ENSOANG00000007909) #10	AGBL2 (ENSOANG00000007906) #11	MTCH2 (ENSOANG00000007903) #12	ENSOANG00000007902	NDUFS3 (ENSOANG00000007900) #14	KBTBD4 (ENSOANG00000007899) #15	ENSOANG00000050504 #16	CELF1 (ENSOANG00000007896) #17	RAPSN (ENSOANG00000007894) #18	PSMC3 (ENSOANG00000040187) #19	SLC39A13 (ENSOANG00000007890) #20	SPI1 (ENSOANG00000050063) #21	MYBPC3 (ENSOANG00000007889) #22	MADD (ENSOANG00000007884) #23	NR1H3 (ENSOANG00000006250) #24	ACP2 (ENSOANG00000048933) #25	DDB2 (ENSOANG00000006247) #26	PACSIN3 (ENSOANG00000004082) #27	ARFGAP2 (ENSOANG00000004083) #28	CSTPP1 (ENSOANG00000031094) #29	LRP4 (ENSOANG00000001954) #30	CKAP5 (ENSOANG00000002765) #31	ENSOANG00000002767	ARHGAP1 (ENSOANG00000002770) #34	ATG13 (ENSOANG00000006550) #35	HARBI1 (ENSOANG00000004814) #36	AMBRA1 (ENSOANG00000014521) #37	CHRM4 (ENSOANG00000045540)
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34
Archosauria	ANCESTRAL SPECIES	5	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b.b	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35
Aves	ANCESTRAL SPECIES	2	ENSGT00940000159837	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Anatidae	ANCESTRAL SPECIES	50	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00390000001738
Duck	MODERN SPECIES	23	PRDM11 (ENSAPLG00000006096)	SYT13 (ENSAPLG00000006046)	ENSAPLG00000005604	FUT8 (ENSAPLG00000009017)	ENSAPLG00000024392	C1QTNF4 (ENSAPLG00000000930)	FAM180B (ENSAPLG00000018391) #13	KBTBD4 (ENSAPLG00000008802) #15	NDUFS3 (ENSAPLG00000008862) #14	CELF1 (ENSAPLG00000020823) #17	RAPSN (ENSAPLG00000008323) #18	PSMC3 (ENSAPLG00000008009) #19	ENSAPLG00000002605	SLC39A13 (ENSAPLG00000002504) #20	SPI1 (ENSAPLG00000002423) #21	MYBPC3 (ENSAPLG00000016373) #22	MADD (ENSAPLG00000010515) #23	NR1H3 (ENSAPLG00000010925) #24	ACP2 (ENSAPLG00000011116) #25	VPS51 (ENSAPLG00000023418)	ZFP91 (ENSAPLG00000006822)	CNTF (ENSAPLG00000028898)	DTX4 (ENSAPLG00000019223)	MPEG1 (ENSAPLG00000007201)	BEST1 (ENSAPLG00000007353)	RAB3IL1 (ENSAPLG00000007457)	ENSAPLG00000007497	ENSAPLG00000008364	CSRP3 (ENSAPLG00000008804)	ENSAPLG00000007205	E2F8 (ENSAPLG00000009091)
Pink-footed goose	MODERN SPECIES	39	PRDM11 (ENSABRG00000017655)	SYT13 (ENSABRG00000017650)	ENSABRG00000017633	FUT8 (ENSABRG00000017622)	C1QTNF4 (ENSABRG00000017618)	FAM180B (ENSABRG00000017617) #13	NDUFS3 (ENSABRG00000017605) #14	KBTBD4 (ENSABRG00000017600) #15	PTPMT1 (ENSABRG00000017594) #16	CELF1 (ENSABRG00000017589) #17	RAPSN (ENSABRG00000017555) #18	PSMC3 (ENSABRG00000017537) #19	ENSABRG00000017513	SLC39A13 (ENSABRG00000017506) #20	SPI1 (ENSABRG00000017499) #21	MYBPC3 (ENSABRG00000015621) #22	MADD (ENSABRG00000005509) #23	NR1H3 (ENSABRG00000004173) #24	ACP2 (ENSABRG00000002430) #25	VPS51 (ENSABRG00000002028)	ENSABRG00000001968	ENSABRG00000001880	LRRC55 (ENSABRG00000001850)	APLNR (ENSABRG00000001829)	ENSABRG00000001782	SSRP1 (ENSABRG00000001696)	P2RX3 (ENSABRG00000001629)
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00940000159837.n	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Japanese quail	MODERN SPECIES	23	PRDM11 (ENSCJPG00005010830)	SYT13 (ENSCJPG00005010831)	ENSCJPG00005010832	FUT8 (ENSCJPG00005010835)	C1QTNF4 (ENSCJPG00005010836)	FAM180B (ENSCJPG00005010837) #13	NDUFS3 (ENSCJPG00005010838) #14	KBTBD4 (ENSCJPG00005010839) #15	PTPMT1 (ENSCJPG00005010840) #16	CELF1 (ENSCJPG00005010841) #17	RAPSN (ENSCJPG00005010842) #18	PSMC3 (ENSCJPG00005010843) #19	ENSCJPG00005010844	SLC39A13 (ENSCJPG00005010845) #20	SPI1 (ENSCJPG00005010846) #21	MYBPC3 (ENSCJPG00005010847) #22	ENSCJPG00005011665 #23	ENSCJPG00005011707 #23	NR1H3 (ENSCJPG00005012023) #24	ACP2 (ENSCJPG00005012024) #25	DDB2 (ENSCJPG00005012054) #26	PACSIN3 (ENSCJPG00005012055) #27	ARFGAP2 (ENSCJPG00005012077) #28	CSTPP1 (ENSCJPG00005012079) #29	ENSCJPG00005012080	LRP4 (ENSCJPG00005012083) #30	CKAP5 (ENSCJPG00005012374) #31	ENSCJPG00005013566	ARHGAP1 (ENSCJPG00005013573) #34	ATG13 (ENSCJPG00005013688) #35	HARBI1 (ENSCJPG00005013781) #36
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00940000159837.n	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37	ENSGT00940000160394.a
Chicken	MODERN SPECIES	34	PRDM11 (ENSGALG00010021738)	SYT13 (ENSGALG00010021743)	ASTL (ENSGALG00010021777)	FUT8 (ENSGALG00010021805)	C1QTNF4 (ENSGALG00010021945)	FAM180B (ENSGALG00010021988) #13	KBTBD4 (ENSGALG00010022032) #15	NDUFS3 (ENSGALG00010023836) #14	PTPMT1 (ENSGALG00010022073) #16	CELF1 (ENSGALG00010022161) #17	RAPSN (ENSGALG00010022229) #18	PSMC3 (ENSGALG00010022256) #19	ENSGALG00010022328	SLC39A13 (ENSGALG00010022353) #20	SPI1 (ENSGALG00010022386) #21	MYBPC3 (ENSGALG00010022468) #22	MADD (ENSGALG00010022619) #23	NR1H3 (ENSGALG00010022650) #24	ACP2 (ENSGALG00010022727) #25	DDB2 (ENSGALG00010022792) #26	PACSIN3 (ENSGALG00010022819) #27	ARFGAP2 (ENSGALG00010022838) #28	CSTPP1 (ENSGALG00010022864) #29	LRP4 (ENSGALG00010022929) #30	CKAP5 (ENSGALG00010022971) #31	F2 (ENSGALG00010022987)	ARHGAP1 (ENSGALG00010022997) #34	ATG13 (ENSGALG00010023064) #35	HARBI1 (ENSGALG00010023083) #36	AMBRA1 (ENSGALG00010023866) #37	CHRM4 (ENSGALG00010023120)
Turkey	MODERN SPECIES	25	ENSMGAG00000010974 #35	ENSMGAG00000010945 #34	ENSMGAG00000020851 #31	ENSMGAG00000010924	ENSMGAG00000010880 #31	ENSMGAG00000010850 #30	ENSMGAG00000022957	ENSMGAG00000019564	ENSMGAG00000010807 #28	ENSMGAG00000010789 #27	ENSMGAG00000010776 #25	ENSMGAG00000010763 #26	NR1H3 (ENSMGAG00000010751) #24	ENSMGAG00000021766 #23	ENSMGAG00000017760 #23	ENSMGAG00000010695 #22	ENSMGAG00000010682 #21	ENSMGAG00000010673 #20	ENSMGAG00000010651 #19	ENSMGAG00000010671	ENSMGAG00000010605 #18	ENSMGAG00000021247 #17	ENSMGAG00000010629 #17	KBTBD4 (ENSMGAG00000010626) #15	ENSMGAG00000010627 #16	NDUFS3 (ENSMGAG00000010620) #14	C1QTNF4 (ENSMGAG00000022056)	ENSMGAG00000022471	ENSMGAG00000010576	ENSMGAG00000010571	ENSMGAG00000010570
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00940000159837	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Great tit	MODERN SPECIES	25	TSPAN18 (ENSPMJG00000000485)	TP53I11 (ENSPMJG00000000505)	PRDM11 (ENSPMJG00000000581)	SYT13 (ENSPMJG00000000628)	FUT8 (ENSPMJG00000000654)	C1QTNF4 (ENSPMJG00000000868)	ENSPMJG00000000873	NDUFS3 (ENSPMJG00000000879) #14	KBTBD4 (ENSPMJG00000000885) #15	PTPMT1 (ENSPMJG00000000896) #16	CELF1 (ENSPMJG00000000899) #17	PSMC3 (ENSPMJG00000000915) #19	ENSPMJG00000000920	SLC39A13 (ENSPMJG00000000932) #20	SPI1 (ENSPMJG00000000997) #21	MYBPC3 (ENSPMJG00000001019) #22	MADD (ENSPMJG00000004069) #23	NR1H3 (ENSPMJG00000012279) #24	ACP2 (ENSPMJG00000012280) #25	DDB2 (ENSPMJG00000012286) #26	PACSIN3 (ENSPMJG00000012291) #27	ARFGAP2 (ENSPMJG00000012299) #28	CSTPP1 (ENSPMJG00000012300) #29	ENSPMJG00000012301	LRP4 (ENSPMJG00000012302) #30	CKAP5 (ENSPMJG00000012334) #31	ENSPMJG00000013670	ARHGAP1 (ENSPMJG00000013679) #34	ATG13 (ENSPMJG00000013870) #35	HARBI1 (ENSPMJG00000013871) #36	AMBRA1 (ENSPMJG00000013872) #37
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00940000159837	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00940000159837	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000171188	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37	ENSGT00940000160394.a
Medium ground finch	MODERN SPECIES	15	TP53I11 (ENSGFOG00000006237)	PRDM11 (ENSGFOG00000006231)	SYT13 (ENSGFOG00000006222)	ENSGFOG00000006183	FUT8 (ENSGFOG00000006169)	C1QTNF4 (ENSGFOG00000006164)	ENSGFOG00000006160	NDUFS3 (ENSGFOG00000006152) #14	KBTBD4 (ENSGFOG00000006147) #15	CELF1 (ENSGFOG00000006114) #17	RAPSN (ENSGFOG00000006104) #18	PSMC3 (ENSGFOG00000006090) #19	ENSGFOG00000006082	SLC39A13 (ENSGFOG00000006071) #20	SPI1 (ENSGFOG00000006067) #21	MYBPC3 (ENSGFOG00000005710) #22	MADD (ENSGFOG00000005599) #23	NR1H3 (ENSGFOG00000005580) #24	ACP2 (ENSGFOG00000005529) #25	DDB2 (ENSGFOG00000005508) #26	PACSIN3 (ENSGFOG00000005468) #27	ARFGAP2 (ENSGFOG00000005441) #28	CSTPP1 (ENSGFOG00000005426) #29	LRP4 (ENSGFOG00000005261) #30	CKAP5 (ENSGFOG00000005139) #31	ENSGFOG00000005094	ARHGAP1 (ENSGFOG00000005074) #34	ATG13 (ENSGFOG00000005043) #35	HARBI1 (ENSGFOG00000005030) #36	AMBRA1 (ENSGFOG00000005019) #37	CHRM4 (ENSGFOG00000005010)
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00940000159837	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000171188	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37	ENSGT00940000160394.a
Zebra finch	MODERN SPECIES	27	TSPAN18 (ENSTGUG00000028163)	TP53I11 (ENSTGUG00000019013)	PRDM11 (ENSTGUG00000028029)	SYT13 (ENSTGUG00000027086)	FUT8 (ENSTGUG00000010311)	C1QTNF4 (ENSTGUG00000010341)	ENSTGUG00000019362	NDUFS3 (ENSTGUG00000010343) #14	KBTBD4 (ENSTGUG00000010361) #15	PTPMT1 (ENSTGUG00000010369) #16	CELF1 (ENSTGUG00000010377) #17	RAPSN (ENSTGUG00000010400) #18	PSMC3 (ENSTGUG00000028944) #19	SLC39A13 (ENSTGUG00000010418) #20	SPI1 (ENSTGUG00000026691) #21	MYBPC3 (ENSTGUG00000010426) #22	MADD (ENSTGUG00000010454) #23	NR1H3 (ENSTGUG00000010475) #24	ACP2 (ENSTGUG00000010486) #25	DDB2 (ENSTGUG00000010493) #26	PACSIN3 (ENSTGUG00000010497) #27	ARFGAP2 (ENSTGUG00000010515) #28	CSTPP1 (ENSTGUG00000010527) #29	LRP4 (ENSTGUG00000010533) #30	CKAP5 (ENSTGUG00000023569) #31	ENSTGUG00000010580	ARHGAP1 (ENSTGUG00000010593) #34	ATG13 (ENSTGUG00000010603) #35	HARBI1 (ENSTGUG00000010627) #36	AMBRA1 (ENSTGUG00000010628) #37	CHRM4 (ENSTGUG00000010635)
Common canary	MODERN SPECIES	3	PRDM11 (ENSSCAG00000003474)	SYT13 (ENSSCAG00000003465)	ENSSCAG00000003458	FUT8 (ENSSCAG00000003442)	C1QTNF4 (ENSSCAG00000003436)	ENSSCAG00000003433	NDUFS3 (ENSSCAG00000003420) #14	KBTBD4 (ENSSCAG00000003415) #15	PTPMT1 (ENSSCAG00000003409) #16	CELF1 (ENSSCAG00000003397) #17	RAPSN (ENSSCAG00000003388) #18	PSMC3 (ENSSCAG00000003373) #19	ENSSCAG00000003365	SLC39A13 (ENSSCAG00000003352) #20	SPI1 (ENSSCAG00000003345) #21	MYBPC3 (ENSSCAG00000003326) #22	MADD (ENSSCAG00000003307) #23	NR1H3 (ENSSCAG00000003301) #24	ACP2 (ENSSCAG00000003297) #25	DDB2 (ENSSCAG00000003292) #26	PACSIN3 (ENSSCAG00000003283) #27	ARFGAP2 (ENSSCAG00000003185) #28	CSTPP1 (ENSSCAG00000003159) #29	LRP4 (ENSSCAG00000003129) #30	CKAP5 (ENSSCAG00000003039) #31	ENSSCAG00000003007	ARHGAP1 (ENSSCAG00000002990) #34	ATG13 (ENSSCAG00000002981) #35	HARBI1 (ENSSCAG00000002978) #36	AMBRA1 (ENSSCAG00000002743) #37	CHRM4 (ENSSCAG00000002686)
Flycatcher	MODERN SPECIES	24	ENSFALG00000028360	SYT13 (ENSFALG00000012266)	ENSFALG00000012241	ENSFALG00000006418	C1QTNF4 (ENSFALG00000006415)	FAM180B (ENSFALG00000014206) #13	KBTBD4 (ENSFALG00000006408) #15	NDUFS3 (ENSFALG00000006411) #14	PTPMT1 (ENSFALG00000006406) #16	CELF1 (ENSFALG00000006402) #17	RAPSN (ENSFALG00000006401) #18	PSMC3 (ENSFALG00000006396) #19	ENSFALG00000028830	SLC39A13 (ENSFALG00000006394) #20	SPI1 (ENSFALG00000024717) #21	MYBPC3 (ENSFALG00000006369) #22	ENSFALG00000006333 #23	ENSFALG00000026717 #23	NR1H3 (ENSFALG00000006313) #24	ACP2 (ENSFALG00000026896) #25	DDB2 (ENSFALG00000025215) #26	PACSIN3 (ENSFALG00000006296) #27	ARFGAP2 (ENSFALG00000006292) #28	CSTPP1 (ENSFALG00000024272) #29	ENSFALG00000025106	LRP4 (ENSFALG00000006286) #30	CKAP5 (ENSFALG00000006282) #31	ENSFALG00000006272	ARHGAP1 (ENSFALG00000006265) #34	ATG13 (ENSFALG00000006261) #35	HARBI1 (ENSFALG00000028036) #36
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT00940000160226	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Kakapo	MODERN SPECIES	21	SYT13 (ENSSHBG00005002521)	ENSSHBG00005002560	FUT8 (ENSSHBG00005002608)	ENSSHBG00005002630	C1QTNF4 (ENSSHBG00005002642)	ENSSHBG00005002652	NDUFS3 (ENSSHBG00005002665) #14	KBTBD4 (ENSSHBG00005002689) #15	PTPMT1 (ENSSHBG00005002711) #16	CELF1 (ENSSHBG00005002788) #17	RAPSN (ENSSHBG00005002915) #18	PSMC3 (ENSSHBG00005002985) #19	ENSSHBG00005003006	SLC39A13 (ENSSHBG00005003021) #20	SPI1 (ENSSHBG00005003049) #21	MYBPC3 (ENSSHBG00005003084) #22	MADD (ENSSHBG00005003189) #23	NR1H3 (ENSSHBG00005003352) #24	ACP2 (ENSSHBG00005003371) #25	DDB2 (ENSSHBG00005003396) #26	PACSIN3 (ENSSHBG00005003435) #27	ARFGAP2 (ENSSHBG00005003460) #28	CSTPP1 (ENSSHBG00005003475) #29	LRP4 (ENSSHBG00005003580) #30	CKAP5 (ENSSHBG00005003723) #31	ENSSHBG00005003750	ARHGAP1 (ENSSHBG00005003766) #34	ATG13 (ENSSHBG00005003785) #35	HARBI1 (ENSSHBG00005003802) #36	AMBRA1 (ENSSHBG00005003842) #37	CHRM4 (ENSSHBG00005003882)
Golden eagle	MODERN SPECIES	11	PRDM11 (ENSACCG00020004687)	SYT13 (ENSACCG00020004674)	ENSACCG00020004664	FUT8 (ENSACCG00020004646)	C1QTNF4 (ENSACCG00020004637)	FAM180B (ENSACCG00020004632) #13	NDUFS3 (ENSACCG00020004622) #14	KBTBD4 (ENSACCG00020004612) #15	PTPMT1 (ENSACCG00020004607) #16	CELF1 (ENSACCG00020004593) #17	RAPSN (ENSACCG00020004581) #18	PSMC3 (ENSACCG00020004570) #19	ENSACCG00020004563	SLC39A13 (ENSACCG00020009305) #20	SPI1 (ENSACCG00020009293) #21	MYBPC3 (ENSACCG00020009268) #22	MADD (ENSACCG00020009078) #23	NR1H3 (ENSACCG00020008972) #24	ACP2 (ENSACCG00020008959) #25	DDB2 (ENSACCG00020008939) #26	PACSIN3 (ENSACCG00020008914) #27	ARFGAP2 (ENSACCG00020008855) #28	CSTPP1 (ENSACCG00020008796) #29	LRP4 (ENSACCG00020008390) #30	CKAP5 (ENSACCG00020007836) #31	ENSACCG00020007794	ZNF408 (ENSACCG00020007780) #33	ARHGAP1 (ENSACCG00020007772) #34	ATG13 (ENSACCG00020007724) #35	HARBI1 (ENSACCG00020007689) #36	AMBRA1 (ENSACCG00020007670) #37
African ostrich	MODERN SPECIES	885	PRDM11 (ENSSCUG00000012420)	SYT13 (ENSSCUG00000012417)	ENSSCUG00000012414	ENSSCUG00000017350	FUT8 (ENSSCUG00000017348)	C1QTNF4 (ENSSCUG00000017344)	FAM180B (ENSSCUG00000017343) #13	NDUFS3 (ENSSCUG00000017342) #14	KBTBD4 (ENSSCUG00000017340) #15	CELF1 (ENSSCUG00000017336) #17	RAPSN (ENSSCUG00000017332) #18	PSMC3 (ENSSCUG00000017315) #19	ENSSCUG00000017312	SLC39A13 (ENSSCUG00000017311) #20	SPI1 (ENSSCUG00000017309) #21	MYBPC3 (ENSSCUG00000017219) #22	MADD (ENSSCUG00000017005) #23	NR1H3 (ENSSCUG00000016935) #24	ACP2 (ENSSCUG00000016921) #25	DDB2 (ENSSCUG00000016918) #26	PACSIN3 (ENSSCUG00000016916) #27	ARFGAP2 (ENSSCUG00000016901) #28	CSTPP1 (ENSSCUG00000016889) #29	LRP4 (ENSSCUG00000016879) #30	CKAP5 (ENSSCUG00000016863) #31	ENSSCUG00000016848
Australian saltwater crocodile	MODERN SPECIES	64	PALS1 (ENSCPRG00005017511)	ENSCPRG00005017503	GPHN (ENSCPRG00005017468)	ENSCPRG00005017457	FUT8 (ENSCPRG00005017454)	C1QTNF4 (ENSCPRG00005017446)	FAM180B (ENSCPRG00005017443) #13	NDUFS3 (ENSCPRG00005017439) #14	KBTBD4 (ENSCPRG00005017435) #15	PTPMT1 (ENSCPRG00005017408) #16	CELF1 (ENSCPRG00005017370) #17	PSMC3 (ENSCPRG00005017298) #19	ENSCPRG00005017284	SLC39A13 (ENSCPRG00005017281) #20	SPI1 (ENSCPRG00005017278) #21	MYBPC3 (ENSCPRG00005017258) #22	MADD (ENSCPRG00005015319) #23	NR1H3 (ENSCPRG00005014870) #24	ACP2 (ENSCPRG00005014864) #25	DDB2 (ENSCPRG00005014860) #26	PACSIN3 (ENSCPRG00005014853) #27	ENSCPRG00005014850	ARFGAP2 (ENSCPRG00005014830) #28	CSTPP1 (ENSCPRG00005014822) #29	LRP4 (ENSCPRG00005014807) #30	CKAP5 (ENSCPRG00005014039) #31	ENSCPRG00005013914	ZNF408 (ENSCPRG00005013908) #33	ARHGAP1 (ENSCPRG00005013849) #34	ATG13 (ENSCPRG00005013813) #35	HARBI1 (ENSCPRG00005013808) #36
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000156087	ENSGT00940000161537.a	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34
Emydidae	ANCESTRAL SPECIES	2	ENSGT00940000161537.a	ENSGT01070000254525.A	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34
painted turtle	MODERN SPECIES	13	ENSCPBG00000022937	EFNA2 (ENSCPBG00000022934)	FAM174C (ENSCPBG00000022933)	CIRBP (ENSCPBG00000022930)	MIDN (ENSCPBG00000022926)	ATP5F1D (ENSCPBG00000022922)	ENSCPBG00000022921	CBARP (ENSCPBG00000022920)	STK11 (ENSCPBG00000022919)	CELF1 (ENSCPBG00000022914) #17	RAPSN (ENSCPBG00000022911) #18	PSMC3 (ENSCPBG00000022907) #19	ENSCPBG00000022906	SLC39A13 (ENSCPBG00000022904) #20	SPI1 (ENSCPBG00000022901) #21	MYBPC3 (ENSCPBG00000022606) #22	MADD (ENSCPBG00000015642) #23	NR1H3 (ENSCPBG00000015508) #24	ACP2 (ENSCPBG00000015503) #25	DDB2 (ENSCPBG00000015494) #26	PACSIN3 (ENSCPBG00000015488) #27	ENSCPBG00000015485	ENSCPBG00000015483	ARFGAP2 (ENSCPBG00000015479) #28	CSTPP1 (ENSCPBG00000015473) #29	LRP4 (ENSCPBG00000015397) #30	CKAP5 (ENSCPBG00000012821) #31	ENSCPBG00000012688	ZNF408 (ENSCPBG00000012683) #33	ARHGAP1 (ENSCPBG00000012676) #34	ATG13 (ENSCPBG00000012673) #35
Three-toed box turtle	MODERN SPECIES	40	ENSTMTG00000007431	ENSTMTG00000007421	GPHN (ENSTMTG00000002488)	FUT8 (ENSTMTG00000002222)	C1QTNF4 (ENSTMTG00000002213)	FAM180B (ENSTMTG00000002205) #13	NDUFS3 (ENSTMTG00000002201) #14	KBTBD4 (ENSTMTG00000002190) #15	PTPMT1 (ENSTMTG00000002180) #16	CELF1 (ENSTMTG00000002164) #17	RAPSN (ENSTMTG00000002125) #18	PSMC3 (ENSTMTG00000002110) #19	ENSTMTG00000002105	SLC39A13 (ENSTMTG00000002100) #20	SPI1 (ENSTMTG00000002089) #21	MYBPC3 (ENSTMTG00000002067) #22	MADD (ENSTMTG00000001980) #23	NR1H3 (ENSTMTG00000001955) #24	ACP2 (ENSTMTG00000001937) #25	DDB2 (ENSTMTG00000001919) #26	PACSIN3 (ENSTMTG00000001907) #27	ENSTMTG00000001899	ENSTMTG00000001884	ARFGAP2 (ENSTMTG00000001865) #28	CSTPP1 (ENSTMTG00000001857) #29	ENSTMTG00000001848	LRP4 (ENSTMTG00000001223) #30	CKAP5 (ENSTMTG00000000970) #31	ENSTMTG00000000941	ENSTMTG00000000932	ARHGAP1 (ENSTMTG00000000921) #34
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00940000156087	ENSGT00940000161537.a	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a #13	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757.g.c #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35
Goode s thornscrub tortoise	MODERN SPECIES	18	PALS1 (ENSGEVG00005017867)	ENSGEVG00005017893	GPHN (ENSGEVG00005018085)	FUT8 (ENSGEVG00005018568)	C1QTNF4 (ENSGEVG00005018589)	FAM180B (ENSGEVG00005018619) #13	ENSGEVG00005018637 #14	KBTBD4 (ENSGEVG00005018662) #15	PTPMT1 (ENSGEVG00005018678) #16	CELF1 (ENSGEVG00005008981) #17	RAPSN (ENSGEVG00005009044) #18	PSMC3 (ENSGEVG00005009237) #19	ENSGEVG00005009277	SLC39A13 (ENSGEVG00005009349) #20	SPI1 (ENSGEVG00005009450) #21	MYBPC3 (ENSGEVG00005009503) #22	MADD (ENSGEVG00005009759) #23	NR1H3 (ENSGEVG00005009930) #24	ACP2 (ENSGEVG00005009970) #25	DDB2 (ENSGEVG00005010017) #26	PACSIN3 (ENSGEVG00005010100) #27	ENSGEVG00005010139	ENSGEVG00005010166	ARFGAP2 (ENSGEVG00005010210) #28	CSTPP1 (ENSGEVG00005010346) #29	LRP4 (ENSGEVG00005010404) #30	CKAP5 (ENSGEVG00005010815) #31	ENSGEVG00005011016	ZNF408 (ENSGEVG00005011280) #33	ARHGAP1 (ENSGEVG00005011311) #34	ATG13 (ENSGEVG00005011349) #35
Abingdon island giant tortoise	MODERN SPECIES	852															SPI1 (ENSCABG00000010435) #21	MYBPC3 (ENSCABG00000010433) #22	MADD (ENSCABG00000001771) #23	NR1H3 (ENSCABG00000001529) #24	ACP2 (ENSCABG00000001524) #25	DDB2 (ENSCABG00000001519) #26	PACSIN3 (ENSCABG00000001512) #27	ENSCABG00000001508	ARFGAP2 (ENSCABG00000001499) #28	CSTPP1 (ENSCABG00000001380) #29
Chinese turtle	MODERN SPECIES	316	GPHN (ENSPSIG00000016624)	ENSPSIG00000000041	ENSPSIG00000000042	FUT8 (ENSPSIG00000003737)	C1QTNF4 (ENSPSIG00000003833)	FAM180B (ENSPSIG00000003853) #13	NDUFS3 (ENSPSIG00000003860) #14	KBTBD4 (ENSPSIG00000003906) #15	PTPMT1 (ENSPSIG00000003911) #16	CELF1 (ENSPSIG00000003922) #17	RAPSN (ENSPSIG00000004089) #18	PSMC3 (ENSPSIG00000004129) #19	ENSPSIG00000004194	SLC39A13 (ENSPSIG00000004231) #20	SPI1 (ENSPSIG00000004344) #21	MYBPC3 (ENSPSIG00000004361) #22
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000171188	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446.bb #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35
Episquamata	ANCESTRAL SPECIES		ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000171188	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446.bb #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000171188	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446.bb #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT01030000235152.a	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Common wall lizard	MODERN SPECIES		ENSPMRG00000003786	GPHN (ENSPMRG00000003801)	ENSPMRG00000003843	FUT8 (ENSPMRG00000003850)	C1QTNF4 (ENSPMRG00000003855)	ENSPMRG00000003859	NDUFS3 (ENSPMRG00000003864) #14	KBTBD4 (ENSPMRG00000003871) #15	PTPMT1 (ENSPMRG00000003875) #16	CELF1 (ENSPMRG00000003881) #17	PSMC3 (ENSPMRG00000003892) #19	ENSPMRG00000003975	ENSPMRG00000003979	SLC39A13 (ENSPMRG00000003994) #20	SPI1 (ENSPMRG00000004012) #21	MYBPC3 (ENSPMRG00000004475) #22	MADD (ENSPMRG00000008010) #23	NR1H3 (ENSPMRG00000011909) #24	ACP2 (ENSPMRG00000011917) #25	DDB2 (ENSPMRG00000011927) #26	PACSIN3 (ENSPMRG00000011938) #27	ENSPMRG00000011947	ARFGAP2 (ENSPMRG00000011954) #28	CSTPP1 (ENSPMRG00000011967) #29	LRP4 (ENSPMRG00000012004) #30	CKAP5 (ENSPMRG00000012212) #31	ENSPMRG00000012267	ZNF408 (ENSPMRG00000012272) #33	ARHGAP1 (ENSPMRG00000012280) #34	ATG13 (ENSPMRG00000012377) #35	HARBI1 (ENSPMRG00000012436) #36
Argentine black and white tegu	MODERN SPECIES	3	GPHN (ENSSMRG00000006466)	ENSSMRG00000006386	ENSSMRG00000006378	FUT8 (ENSSMRG00000006374)	C1QTNF4 (ENSSMRG00000006349)	ENSSMRG00000006346	NDUFS3 (ENSSMRG00000006342) #14	KBTBD4 (ENSSMRG00000006338) #15	PTPMT1 (ENSSMRG00000006333) #16	CELF1 (ENSSMRG00000006315) #17	RAPSN (ENSSMRG00000006301) #18	PSMC3 (ENSSMRG00000006278) #19	ENSSMRG00000006277	SLC39A13 (ENSSMRG00000006274) #20	SPI1 (ENSSMRG00000006272) #21	MYBPC3 (ENSSMRG00000006219) #22	MADD (ENSSMRG00000006111) #23	NR1H3 (ENSSMRG00000006068) #24	ACP2 (ENSSMRG00000006020) #25	DDB2 (ENSSMRG00000006012) #26	PACSIN3 (ENSSMRG00000006009) #27	ARFGAP2 (ENSSMRG00000006004) #28	CSTPP1 (ENSSMRG00000006000) #29	LRP4 (ENSSMRG00000005929) #30	CKAP5 (ENSSMRG00000005833) #31	ENSSMRG00000005831	ZNF408 (ENSSMRG00000005829) #33	ARHGAP1 (ENSSMRG00000005826) #34	ATG13 (ENSSMRG00000005818) #35	HARBI1 (ENSSMRG00000005723) #36	AMBRA1 (ENSSMRG00000005709) #37
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000171188	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446.bb #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000161474.b	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT00390000007055 #35
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000171188	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446.bb #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00930000151062 #33	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Elapidae_a	ANCESTRAL SPECIES	4	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000171188	ENSGT00390000017480.a #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446.bb #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	2874																ENSLLTG00000017109 #22	MADD (ENSLLTG00000017099) #23	NR1H3 (ENSLLTG00000017092) #24
Blue-lipped sea krait	MODERN SPECIES	6873															SPI1 (ENSLLTG00000012910) #21	ENSLLTG00000012888 #22
Acanthophiinae	ANCESTRAL SPECIES	6	ENSGT00940000156087	ENSGT00940000161537	ENSGT00390000016577	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000171188	ENSGT00390000017480.a #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000158446.bb #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00390000012935 #29	ENSGT00960000189374	ENSGT00940000158287 #30	ENSGT00390000014757.g #31	ENSGT00940000164059	ENSGT00940000160630 #34	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36	ENSGT00390000016223 #37
Eastern brown snake	MODERN SPECIES	1	ENSPTXG00000012061	GPHN (ENSPTXG00000012056)	ENSPTXG00000012053	FUT8 (ENSPTXG00000012050)	C1QTNF4 (ENSPTXG00000012048)	ENSPTXG00000012047	ENSPTXG00000012045 #14	KBTBD4 (ENSPTXG00000012043) #15	PTPMT1 (ENSPTXG00000012042) #16	CELF1 (ENSPTXG00000012038) #17	RAPSN (ENSPTXG00000012021) #18	PSMC3 (ENSPTXG00000012020) #19	ENSPTXG00000012019	SLC39A13 (ENSPTXG00000012018) #20	SPI1 (ENSPTXG00000012017) #21	MYBPC3 (ENSPTXG00000012012) #22	MADD (ENSPTXG00000011997) #23	NR1H3 (ENSPTXG00000011996) #24	ACP2 (ENSPTXG00000011995) #25	DDB2 (ENSPTXG00000011994) #26	PACSIN3 (ENSPTXG00000011992) #27	ARFGAP2 (ENSPTXG00000011989) #28	CSTPP1 (ENSPTXG00000011967) #29	LRP4 (ENSPTXG00000011966) #30	CKAP5 (ENSPTXG00000011950) #31	ENSPTXG00000011946	ARHGAP1 (ENSPTXG00000011944) #34	ATG13 (ENSPTXG00000011942) #35	HARBI1 (ENSPTXG00000011941) #36	AMBRA1 (ENSPTXG00000011938) #37	CHRM4 (ENSPTXG00000011936)
Mainland tiger snake	MODERN SPECIES	36	ENSNSUG00000017704	ENSNSUG00000017705	ENSNSUG00000017706	FUT8 (ENSNSUG00000017707)	C1QTNF4 (ENSNSUG00000017708)	ENSNSUG00000017709	NDUFS3 (ENSNSUG00000017710) #14	KBTBD4 (ENSNSUG00000017712) #15	PTPMT1 (ENSNSUG00000017713) #16	CELF1 (ENSNSUG00000017714) #17	RAPSN (ENSNSUG00000017715) #18	PSMC3 (ENSNSUG00000017716) #19	ENSNSUG00000017717	SLC39A13 (ENSNSUG00000017718) #20	SPI1 (ENSNSUG00000017719) #21	MYBPC3 (ENSNSUG00000017720) #22	MADD (ENSNSUG00000017721) #23	NR1H3 (ENSNSUG00000017722) #24	ACP2 (ENSNSUG00000017723) #25	DDB2 (ENSNSUG00000017724) #26	PACSIN3 (ENSNSUG00000017725) #27	ARFGAP2 (ENSNSUG00000017726) #28	CSTPP1 (ENSNSUG00000017812) #29	ENSNSUG00000017813	LRP4 (ENSNSUG00000017814) #30	CKAP5 (ENSNSUG00000017815) #31	ENSNSUG00000017817	ARHGAP1 (ENSNSUG00000017818) #34	ATG13 (ENSNSUG00000017819) #35	HARBI1 (ENSNSUG00000017831) #36	AMBRA1 (ENSNSUG00000017836) #37
Indian cobra	MODERN SPECIES		ENSNNAG00000008438	GPHN (ENSNNAG00000008049)	ENSNNAG00000008005	FUT8 (ENSNNAG00000007963)	ENSNNAG00000007935	ENSNNAG00000007916	NDUFS3 (ENSNNAG00000007881) #14	KBTBD4 (ENSNNAG00000007860) #15	PTPMT1 (ENSNNAG00000007839) #16	CELF1 (ENSNNAG00000007686) #17	RAPSN (ENSNNAG00000007663) #18	PSMC3 (ENSNNAG00000007548) #19	ENSNNAG00000007492	SLC39A13 (ENSNNAG00000007477) #20	SPI1 (ENSNNAG00000007464) #21	MYBPC3 (ENSNNAG00000007372) #22	MADD (ENSNNAG00000006994) #23	NR1H3 (ENSNNAG00000006918) #24	ACP2 (ENSNNAG00000006887) #25	DDB2 (ENSNNAG00000006863) #26	PACSIN3 (ENSNNAG00000006783) #27	ARFGAP2 (ENSNNAG00000006716) #28	CSTPP1 (ENSNNAG00000016196) #29	ENSNNAG00000016189	LRP4 (ENSNNAG00000016125) #30	CKAP5 (ENSNNAG00000012822) #31	ENSNNAG00000012596 #33	ENSNNAG00000012433	ARHGAP1 (ENSNNAG00000012386) #34	ATG13 (ENSNNAG00000012104) #35	HARBI1 (ENSNNAG00000012072) #36
Lizard	MODERN SPECIES		ENSACAG00000043516	ENSACAG00000044894	ENSACAG00000001858	C1QTNF4 (ENSACAG00000037453)	ENSACAG00000045049	NDUFS3 (ENSACAG00000001966) #14	KBTBD4 (ENSACAG00000002052) #15	PTPMT1 (ENSACAG00000002085) #16	CELF1 (ENSACAG00000002114) #17	ENSACAG00000037762	RAPSN (ENSACAG00000002242) #18	PSMC3 (ENSACAG00000002289) #19	ENSACAG00000041621	SLC39A13 (ENSACAG00000002440) #20	SPI1 (ENSACAG00000035887) #21	MYBPC3 (ENSACAG00000002510) #22	ENSACAG00000043000	ENSACAG00000042190	MADD (ENSACAG00000002771) #23	NR1H3 (ENSACAG00000002940) #24	ACP2 (ENSACAG00000003028) #25	DDB2 (ENSACAG00000003132) #26	PACSIN3 (ENSACAG00000003162) #27	ENSACAG00000003234	ENSACAG00000040032 #28	ENSACAG00000003243 #28	CSTPP1 (ENSACAG00000003280) #29	LRP4 (ENSACAG00000003321) #30	CKAP5 (ENSACAG00000029651) #31	ENSACAG00000003853	ZNF408 (ENSACAG00000003860) #33
tuatara	MODERN SPECIES	1197							NDUFS3 (ENSSPUG00000004338) #14	KBTBD4 (ENSSPUG00000004313) #15	PTPMT1 (ENSSPUG00000004302) #16	CELF1 (ENSSPUG00000004228) #17	RAPSN (ENSSPUG00000004202) #18	PSMC3 (ENSSPUG00000004135) #19	ENSSPUG00000004090	SLC39A13 (ENSSPUG00000004075) #20	SPI1 (ENSSPUG00000004067) #21	MYBPC3 (ENSSPUG00000004024) #22	MADD (ENSSPUG00000003976) #23	NR1H3 (ENSSPUG00000003960) #24	ACP2 (ENSSPUG00000003932) #25	DDB2 (ENSSPUG00000003915) #26	PACSIN3 (ENSSPUG00000003902) #27	ENSSPUG00000003889	ARFGAP2 (ENSSPUG00000003827) #28	CSTPP1 (ENSSPUG00000003775) #29	LRP4 (ENSSPUG00000003709) #30	CKAP5 (ENSSPUG00000003628) #31	ENSSPUG00000003565	ZNF408 (ENSSPUG00000003559) #33	ARHGAP1 (ENSSPUG00000003553) #34	ATG13 (ENSSPUG00000003280) #35	HARBI1 (ENSSPUG00000003237) #36
Anura	ANCESTRAL SPECIES	75	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00940000154885.C	ENSGT00390000000020.b #12	ENSGT00940000161832.a	ENSGT00390000017480 #14	ENSGT00940000158775 #15	ENSGT00390000014065 #16	ENSGT00940000158970 #17	ENSGT00390000016785 #18	ENSGT00940000161051.b.g	ENSGT01020000230346.E #19	ENSGT00390000015299.a.b.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000158446 #25	ENSGT00510000047881 #26	ENSGT00950000182973.b.a #27	ENSGT00940000155568 #28	ENSGT00940000165402	ENSGT00390000012935 #29	ENSGT00940000158287 #30	ENSGT00390000014757 #31	ENSGT00940000164059	ENSGT00930000151062 #33	ENSGT00940000160630 #34	ENSGT01030000234629.E.b	ENSGT00390000007055 #35	ENSGT00940000154348.c.b.a #36
Frog	MODERN SPECIES	4	lrrc61 (ENSXETG00000009044) #17	PTPMT1 (ENSXETG00000048327) #16	kbtbd4 (ENSXETG00000027467) #15	ndufs3 (ENSXETG00000019932) #14	ENSXETG00000049085	c1qtnf4 (ENSXETG00000019933)	agbl2 (ENSXETG00000019937) #11	fnbp4 (ENSXETG00000040583) #10	ENSXETG00000041614	nup160 (ENSXETG00000007917) #9	ENSXETG00000048500	psmc3 (ENSXETG00000007916) #19	tmem178.2 (ENSXETG00000007915)	slc39a13 (ENSXETG00000007914) #20	spi1 (ENSXETG00000041528) #21	mybpc3 (ENSXETG00000007912) #22	ENSXETG00000040104	madd (ENSXETG00000031749) #23	acp2 (ENSXETG00000003979) #25	ddb2 (ENSXETG00000003980) #26	cat.2 (ENSXETG00000003981)	ENSXETG00000038751	rdm1 (ENSXETG00000030141)	gh2 (ENSXETG00000003984)	lmo2 (ENSXETG00000042510)	caprin1 (ENSXETG00000003985)	nat10 (ENSXETG00000003782)	abtb2 (ENSXETG00000003783)	tfip11 (ENSXETG00000003784)	fbxo3 (ENSXETG00000003785)	ENSXETG00000044678
Leishan spiny toad	MODERN SPECIES	1	ENSLLEG00000025090	MTCH2 (ENSLLEG00000024984) #12	C1QTNF4 (ENSLLEG00000024939)	NDUFS3 (ENSLLEG00000024831) #14	KBTBD4 (ENSLLEG00000024539) #15	PTPMT1 (ENSLLEG00000024438) #16	CELF1 (ENSLLEG00000023639) #17	RAPSN (ENSLLEG00000023499) #18	ENSLLEG00000023282	PSMC3 (ENSLLEG00000022403) #19	ENSLLEG00000022209	ENSLLEG00000022137	SLC39A13 (ENSLLEG00000022034) #20	ENSLLEG00000022001	SPI1 (ENSLLEG00000021892) #21	MYBPC3 (ENSLLEG00000015296) #22	MADD (ENSLLEG00000013247) #23	ACP2 (ENSLLEG00000013054) #25	DDB2 (ENSLLEG00000012938) #26	PACSIN3 (ENSLLEG00000012543) #27	ENSLLEG00000012474 #28	ENSLLEG00000012427	CSTPP1 (ENSLLEG00000012343) #29	LRP4 (ENSLLEG00000011330) #30	CKAP5 (ENSLLEG00000009276) #31	ENSLLEG00000008894	ZNF408 (ENSLLEG00000008856) #33	ARHGAP1 (ENSLLEG00000008726) #34	ENSLLEG00000025519	ATG13 (ENSLLEG00000025414) #35	HARBI1 (ENSLLEG00000025377) #36
Coelacanth	MODERN SPECIES	229	HARBI1 (ENSLACG00000018783) #36	ATG13 (ENSLACG00000018786) #35	ENSLACG00000018794	ARHGAP1 (ENSLACG00000018798) #34	f2 (ENSLACG00000018806)	znf408 (ENSLACG00000018810) #33	ENSLACG00000018813 #31	ckap5 (ENSLACG00000018814) #31	LRP4 (ENSLACG00000018826) #30	CSTPP1 (ENSLACG00000018885) #29	ENSLACG00000018896	PSMC3 (ENSLACG00000018899) #19	ENSLACG00000018907	SLC39A13 (ENSLACG00000018915) #20	SPI1 (ENSLACG00000018937) #21	MYBPC3 (ENSLACG00000018941) #22	MADD (ENSLACG00000018949) #23	NR1H3 (ENSLACG00000018964) #24	ACP2 (ENSLACG00000018968) #25	PACSIN3 (ENSLACG00000018971) #27	ARFGAP2 (ENSLACG00000018982) #28	ENSLACG00000018983	ENSLACG00000018985	RAPSN (ENSLACG00000018987) #18	CELF1 (ENSLACG00000018990) #17	PTPMT1 (ENSLACG00000018994) #16	KBTBD4 (ENSLACG00000018996) #15	NDUFS3 (ENSLACG00000018998) #14	C1QTNF4 (ENSLACG00000019002)	npsn (ENSLACG00000019008)	NUP160 (ENSLACG00000019014) #9
Actinopterygii	ANCESTRAL SPECIES	12	ENSGT00390000016785 #18	ENSGT00940000158970 #17	ENSGT00390000014065 #16	ENSGT00940000158775 #15	ENSGT00390000017480 #14	ENSGT00940000161832.a	ENSGT00940000161051.a.a.b	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT01020000230346.E #19	ENSGT00390000015299.a.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000156586	ENSGT00940000160051	ENSGT00940000162248	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.a	ENSGT00940000157925	ENSGT00730000111271	ENSGT00530000063582.b	ENSGT00390000007623	ENSGT00940000159545	ENSGT00960000189650
Neopterygii	ANCESTRAL SPECIES	4	ENSGT00940000158970 #17	ENSGT00390000014065 #16	ENSGT00940000158775 #15	ENSGT00390000017480 #14	ENSGT00940000161832.a	ENSGT00940000154856.A.a.c.a	ENSGT00940000161051.a.a.b	ENSGT00390000000972 #9	ENSGT00390000003450 #10	ENSGT00940000160201 #11	ENSGT00390000000020.b #12	ENSGT01020000230346.E #19	ENSGT00390000015299.a.a	ENSGT00940000157349 #20	ENSGT00940000159754 #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000156586	ENSGT00940000162248	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.a	ENSGT00940000157925	ENSGT00730000111271	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT00390000007623.d	ENSGT00940000159545	ENSGT00940000156257
Osteoglossocephalai	ANCESTRAL SPECIES	91	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000010285.d	ENSGT00940000161906	ENSGT00390000013091	ENSGT00390000004738	ENSGT00390000016908	ENSGT00940000159646	ENSGT00390000011067.B	ENSGT01060000249485	ENSGT00940000157389	ENSGT00940000161531.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000156718 #23	ENSGT00940000159068 #24	ENSGT00940000156586	ENSGT00940000161285.b	ENSGT00940000162248	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00940000153222.a.b.b.a	ENSGT00940000157925	ENSGT00730000111271
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	40	ENSGT00390000006738.a	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000010285.d	ENSGT00940000161906	ENSGT00390000013091.jb	ENSGT00390000004738	ENSGT00390000016908	ENSGT00940000159646.k	ENSGT00390000011067.B	ENSGT00940000157389	ENSGT00940000161531.a.a.b	ENSGT00390000015299.a.a.a.n	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b.e #22	ENSGT00940000156718.d #23	ENSGT00940000159068.b #24	ENSGT00940000156586	ENSGT00940000161285.b	ENSGT00940000162248	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d.a	ENSGT00940000153222.a.b.b.b.a	ENSGT00940000157925.f	ENSGT00730000111271
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	122	gins2 (ENSPKIG00000000343)	gse1b (ENSPKIG00000000453)	CIBAR2 (ENSPKIG00000000561)	ENSPKIG00000000579	ENSPKIG00000000595	ATMIN (ENSPKIG00000000615)	cenpn (ENSPKIG00000000636)	cmc2 (ENSPKIG00000000667)	CDYL2 (ENSPKIG00000000693)	dynlrb2 (ENSPKIG00000000719)	wwox (ENSPKIG00000000751)	MAF (ENSPKIG00000000774)	ENSPKIG00000000787	slc39a13 (ENSPKIG00000000830) #20	spi1b (ENSPKIG00000000872) #21	ENSPKIG00000000887 #22	ENSPKIG00000000903 #22	MADD (ENSPKIG00000000930) #23	nr1h3 (ENSPKIG00000000964) #24	ENSPKIG00000000982	ENSPKIG00000001005	fshb (ENSPKIG00000001011)	KCNA4 (ENSPKIG00000001027)	mettl15 (ENSPKIG00000001056)	KIF18A (ENSPKIG00000001113)	bdnf (ENSPKIG00000001243)	lin7c (ENSPKIG00000001263)	lgr4 (ENSPKIG00000001305)	ENSPKIG00000001348	PRMT8 (ENSPKIG00000001380)	CRACR2A (ENSPKIG00000001449)
P. kingsleyae	MODERN SPECIES	122	gse1b (ENSPKIG00000000453)	CIBAR2 (ENSPKIG00000000561)	ENSPKIG00000000579	ENSPKIG00000000595	ATMIN (ENSPKIG00000000615)	cenpn (ENSPKIG00000000636)	cmc2 (ENSPKIG00000000667)	CDYL2 (ENSPKIG00000000693)	dynlrb2 (ENSPKIG00000000719)	wwox (ENSPKIG00000000751)	MAF (ENSPKIG00000000774)	ENSPKIG00000000787	slc39a13 (ENSPKIG00000000830) #20	spi1b (ENSPKIG00000000872) #21	ENSPKIG00000000887 #22	ENSPKIG00000000903 #22	MADD (ENSPKIG00000000930) #23	nr1h3 (ENSPKIG00000000964) #24	ENSPKIG00000000982	ENSPKIG00000001005	fshb (ENSPKIG00000001011)	KCNA4 (ENSPKIG00000001027)	mettl15 (ENSPKIG00000001056)	KIF18A (ENSPKIG00000001113)	bdnf (ENSPKIG00000001243)	lin7c (ENSPKIG00000001263)	lgr4 (ENSPKIG00000001305)	ENSPKIG00000001348	PRMT8 (ENSPKIG00000001380)	CRACR2A (ENSPKIG00000001449)	TMTC2 (ENSPKIG00000001506)
Osteoglossiformes	ANCESTRAL SPECIES	370						ENSGT00940000159763.a	ENSGT00940000157816.a.b.b	ENSGT00940000160601.j	ENSGT00940000158825.a	ENSGT00940000161128.c.a	ENSGT00940000157182.g.b	ENSGT00390000002105	ENSGT01090000260003.a.a	ENSGT00390000015299.a.a.a.m	ENSGT00940000159754.b #21	ENSGT00940000157698.b.f #22	ENSGT00940000156718.c #23	ENSGT00940000159068.a #24
Asian bonytongue	MODERN SPECIES	11	lrrk2 (ENSSFOG00015015869)	SLC2A13 (ENSSFOG00015015834)	ABCD2 (ENSSFOG00015015804)	KIF21A (ENSSFOG00015015586)	ENSSFOG00015015520	CPNE8 (ENSSFOG00015011574)	tprkb (ENSSFOG00015011656)	ENSSFOG00015011682	ccnd1 (ENSSFOG00015011800)	fgf19 (ENSSFOG00015011821)	fgf3 (ENSSFOG00015011896)	ENSSFOG00015011921	ano1a (ENSSFOG00015011940)	ENSSFOG00015011991	SPI1 (ENSSFOG00015012011) #21	mybpc3 (ENSSFOG00015012236) #22	MADD (ENSSFOG00015013242) #23	nr1h3 (ENSSFOG00015013662) #24	KCNA4 (ENSSFOG00015013699)	ENSSFOG00015027310	ENSSFOG00015013725	bdnf (ENSSFOG00015013732)	lin7c (ENSSFOG00015033014)	lgr4 (ENSSFOG00015027064)	SWAP70 (ENSSFOG00015013819)	ENSSFOG00015027847	wee1 (ENSSFOG00015013866)	znf143b (ENSSFOG00015013890)	ipo7 (ENSSFOG00015013937)	tmem41b (ENSSFOG00015014085)	DENND5A (ENSSFOG00015014112)
P. kingsleyae	MODERN SPECIES	23	ENSPKIG00000005352	ENSPKIG00000005384	large2 (ENSPKIG00000005425)	large2 (ENSPKIG00000005472)	tpcn2 (ENSPKIG00000005532)	ccnd1 (ENSPKIG00000005626)	ccnd1 (ENSPKIG00000005639)	fgf19 (ENSPKIG00000005648)	fgf4 (ENSPKIG00000005656)	fgf3 (ENSPKIG00000005674)	zgc:153993 (ENSPKIG00000005684)	ano1a (ENSPKIG00000005734)	FADD (ENSPKIG00000005864)	ENSPKIG00000005876	SPI1 (ENSPKIG00000005902) #21	mybpc3 (ENSPKIG00000005989) #22	MADD (ENSPKIG00000006383) #23	nr1h3 (ENSPKIG00000006820) #24
Clupeocephala	ANCESTRAL SPECIES	299				ENSGT00950000182885.A.a.e	ENSGT00940000156912.c.a	ENSGT00940000158805.a	ENSGT00940000159515.c.b	ENSGT00940000158300.f	ENSGT00390000011846	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a
Otomorpha	ANCESTRAL SPECIES	73																ENSGT00940000157698.b #22	ENSGT00940000153222.a.b.b.b.a	ENSGT00390000007725.B.d	ENSGT00940000159058	ENSGT00390000014756	ENSGT00940000157925	ENSGT00940000162248	ENSGT00940000161285.b	ENSGT00940000156586	ENSGT00940000159754.a #21	ENSGT00940000157349 #20	ENSGT00390000015299.a.a.a	ENSGT00940000155755.a.b	ENSGT00940000155891.c.b	ENSGT00940000155692.j	ENSGT00390000011846
Otophysi	ANCESTRAL SPECIES	150														ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00940000157698.b #22	ENSGT00940000153222.a.b.b.b.a	ENSGT00390000007725.B.d	ENSGT00940000169309	ENSGT00390000014756	ENSGT00940000157925	ENSGT00940000162248	ENSGT00940000161285.b	ENSGT00940000156586	ENSGT00390000018225.A	ENSGT00940000159754.a #21	ENSGT00940000157349 #20	ENSGT00390000015299.a.a.a	ENSGT00940000155755.a.b	ENSGT00940000155891.c.b	ENSGT00940000155692.j
Characiphysae	ANCESTRAL SPECIES	27	ENSGT00940000154258.b	ENSGT00940000153216.a.a.c.b	ENSGT00940000153216.a.a.c.a	ENSGT01050000244841.A.b.a.b.a.b	ENSGT00940000161738	ENSGT00940000156131.a.b	ENSGT00940000157187	ENSGT00950000182966.B.b	ENSGT00950000182966.B.a	ENSGT00390000007606	ENSGT00940000158845	ENSGT00940000159190	ENSGT00940000160212	ENSGT00940000154807.b	ENSGT00390000006347.a	ENSGT00940000157698.b #22	ENSGT00940000153222.a.b.b.b.a	ENSGT00390000007725.B.d	ENSGT00940000169309	ENSGT00390000014756	ENSGT00940000157925	ENSGT00940000162248	ENSGT00940000161285.b	ENSGT00940000156586	ENSGT00390000018225.A	ENSGT00940000159754.a #21	ENSGT00940000157349 #20	ENSGT00390000015299.a.a.a	ENSGT00940000155755.a.b	ENSGT00940000155891.c.b	ENSGT00940000155692.j
Characiphysae_b	ANCESTRAL SPECIES	28	ENSGT00940000153216.a.a.c.b.m.b	ENSGT00940000159286.b	ENSGT00940000153216.a.a.c.b.m.a	ENSGT00940000153216.a.a.c.a	ENSGT01050000244841.A.b.a.b.a.b	ENSGT00940000161738	ENSGT00940000156131.a.b	ENSGT00940000157187	ENSGT00950000182966.B.b	ENSGT00950000182966.B.a	ENSGT00940000158845	ENSGT00940000159190	ENSGT00940000160212	ENSGT00940000154807.b	ENSGT00390000006347.a	ENSGT00940000157698.b #22	ENSGT00940000153222.a.b.b.b.a	ENSGT00390000007725.B.d	ENSGT00940000169309	ENSGT00390000014756	ENSGT00940000157925	ENSGT00940000162248	ENSGT00940000161285.b	ENSGT00940000156586	ENSGT00390000018225.A	ENSGT00940000159754.a #21	ENSGT00940000157349 #20	ENSGT00390000015299.a.a.a	ENSGT00940000155755.a.b	ENSGT00940000155891.c.b	ENSGT00940000155692.j
Characoidei	ANCESTRAL SPECIES	24	ENSGT00390000002200.a.a	ENSGT00940000154258.b	ENSGT00940000153216.a.a.c.b.m.b	ENSGT00940000153216.a.a.c.a	ENSGT01050000244841.A.b.a.b.a.b	ENSGT00940000161738	ENSGT00940000156131.a.b	ENSGT00940000157187	ENSGT00950000182966.B.b	ENSGT00950000182966.B.a	ENSGT00940000158845	ENSGT00940000159190	ENSGT00940000160212	ENSGT00940000154807.b	ENSGT00390000006347.a	ENSGT00940000157698.b #22	ENSGT00940000153222.a.b.b.b.a	ENSGT00390000007725.B.d	ENSGT00940000169309	ENSGT00390000014756	ENSGT00940000157925	ENSGT00940000162248	ENSGT00940000161285.b	ENSGT00940000156586	ENSGT00390000018225.A	ENSGT00940000159754.a #21	ENSGT00940000157349 #20	ENSGT00390000015299.a.a.a	ENSGT00940000155755.a.b	ENSGT00940000155891.c.b	ENSGT00940000155692.j
Red-bellied piranha	MODERN SPECIES	117	agrp (ENSPNAG00000014102)	ENSPNAG00000014127	ENSPNAG00000014519	ctrb.3 (ENSPNAG00000014571)	galr1b (ENSPNAG00000014578)	ddx28 (ENSPNAG00000014597)	NFATC3 (ENSPNAG00000003207)	esrp2 (ENSPNAG00000014736)	ENSPNAG00000014750	ENSPNAG00000003258	slc9a5 (ENSPNAG00000014819)	FHOD1 (ENSPNAG00000014841)	ENSPNAG00000003291	ENSPNAG00000003296	cars1 (ENSPNAG00000003333)	mybpc3 (ENSPNAG00000018606) #22	lin7c (ENSPNAG00000018804)	bdnf (ENSPNAG00000018825)	kif18a (ENSPNAG00000018970)
Mexicana tetra	MODERN SPECIES	31	tle3b (ENSAMXG00000032101)	paqr5b (ENSAMXG00000040389)	ENSAMXG00000042427	glceb (ENSAMXG00000031074)	anp32a (ENSAMXG00000006129)	CORO2B (ENSAMXG00000006120)	itga11a (ENSAMXG00000006104)	mns1 (ENSAMXG00000006098)	tph1b (ENSAMXG00000037098)	kcnc1a (ENSAMXG00000006094)	cd81a (ENSAMXG00000042106)	PKP3 (ENSAMXG00000006089)	ANO9 (ENSAMXG00000006083)	cars1 (ENSAMXG00000006079)	ENSAMXG00000040193	mybpc3 (ENSAMXG00000006074) #22	lin7c (ENSAMXG00000006072)	bdnf (ENSAMXG00000041536)	kif18a (ENSAMXG00000006057)	ENSAMXG00000039173	mettl15 (ENSAMXG00000035601)	lgr4 (ENSAMXG00000006034)	KCNA4 (ENSAMXG00000006026)	fshb (ENSAMXG00000040442)	arl14ep (ENSAMXG00000006020)	si:ch73-314g15.3 (ENSAMXG00000006011)	spi1b (ENSAMXG00000041741) #21	slc39a13 (ENSAMXG00000034037) #20	ENSAMXG00000029399	GAS2 (ENSAMXG00000005998)	ENSAMXG00000038155
Electric eel	MODERN SPECIES	129	lrp3 (ENSEEEG00000018109)	slc7a10a (ENSEEEG00000018036)	rhpn2 (ENSEEEG00000017830)	zgc:165481 (ENSEEEG00000017812)	cep89 (ENSEEEG00000017811)	SLC7A9 (ENSEEEG00000017724)	nudt19 (ENSEEEG00000017706)	celf1 (ENSEEEG00000017558) #17	ptpmt1 (ENSEEEG00000017553) #16	ptpmt1 (ENSEEEG00000017550) #16	ndufs3 (ENSEEEG00000017547) #14	c1qtnf4 (ENSEEEG00000017545)	ENSEEEG00000017542	ENSEEEG00000017491	ENSEEEG00000017480	mybpc3 (ENSEEEG00000017472) #22	lin7c (ENSEEEG00000017415)	kif18a (ENSEEEG00000017404)
Channel catfish	MODERN SPECIES	19	Zdhhc1 (ENSIPUG00000017230)	Hsd11b2 (ENSIPUG00000017251)	atp6v0d1 (ENSIPUG00000017280)	AGRP (ENSIPUG00000017322)	ENSIPUG00000017334	galr1b (ENSIPUG00000017340)	Ddx28 (ENSIPUG00000017350)	nfatc3 (ENSIPUG00000017379)	esrp2 (ENSIPUG00000017454)	ENSIPUG00000017555	kctd19 (ENSIPUG00000017579)	ENSIPUG00000017623	slc9a5 (ENSIPUG00000017666)	FHOD1 (ENSIPUG00000017731)	Cars (ENSIPUG00000017902)	mybpc3 (ENSIPUG00000018047) #22	lin7c (ENSIPUG00000018088)	bdnf (ENSIPUG00000018109)	KIF18A (ENSIPUG00000018117)	mettl15 (ENSIPUG00000018175)	lgr4 (ENSIPUG00000018191)	kcna4 (ENSIPUG00000018292)	arl14ep (ENSIPUG00000018296)	fshb (ENSIPUG00000018302)	si:ch73-314g15.3 (ENSIPUG00000018318)	spi1b (ENSIPUG00000018350) #21	slc39a13 (ENSIPUG00000018377) #20	ENSIPUG00000018398	GAS2 (ENSIPUG00000018414)	slc17a6b (ENSIPUG00000018446)	ano5b (ENSIPUG00000018492)
Cyprinoidei	ANCESTRAL SPECIES	3	ENSGT00940000153941.b	ENSGT00940000158943.c	ENSGT00550000074781	ENSGT00940000163916	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.c	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000159637	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00940000157698.b #22	ENSGT00940000153222.a.b.b.b.a	ENSGT00390000007725.B.d	ENSGT00940000169309	ENSGT00390000014756	ENSGT00940000157925	ENSGT00940000162248	ENSGT00940000161285.b	ENSGT00940000156586.r	ENSGT00390000018225.A	ENSGT00940000159754.a #21	ENSGT00940000157349 #20	ENSGT00390000015299.a.a.a	ENSGT00940000155755.a.b	ENSGT00940000155891.c.b	ENSGT00940000155692.j
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	26					ENSGT00390000012336.a	ENSGT00940000155164.a.b.c	ENSGT00530000063335.A.u.b	ENSGT00530000063675.a.l	ENSGT01040000240503.A.a.a.c.a	ENSGT00390000018400.c.b	ENSGT00390000008152.B.b.a	ENSGT00940000156969.rc	ENSGT00940000159637.o	ENSGT00940000153362.b.i	ENSGT00390000006347.a.b	ENSGT00940000157698.b.g #22	ENSGT00940000153222.a.b.b.b.a.c	ENSGT00390000007725.B.d.c.a	ENSGT00940000169309.c	ENSGT00390000014756.a	ENSGT00940000157925.h	ENSGT00940000162248.c	ENSGT00940000161285.b.a	ENSGT00940000156586.r.b	ENSGT00390000018225.A	ENSGT00940000159754.a.a #21	ENSGT00940000157349.ob.a #20	ENSGT00390000015299.a.a.a.a	ENSGT00940000155755.a.b.a	ENSGT00940000155891.c.b.g	ENSGT00940000155692.j.e
Goldfish	MODERN SPECIES	25	mtmr10 (ENSCARG00000066338)	mphosph10 (ENSCARG00000067143)	mcee (ENSCARG00000067173)	APBA2 (ENSCARG00000067288)	ENSCARG00000067832	TJP1 (ENSCARG00000068018)	ENTREP2 (ENSCARG00000069419)	GOLM2 (ENSCARG00000069428)	ctdspl2b (ENSCARG00000069441)	eif3jb (ENSCARG00000069450)	cilp (ENSCARG00000069457)	IGDCC3 (ENSCARG00000069461)	IGDCC4 (ENSCARG00000069466)	nap1l4b (ENSCARG00000069487)	cars1 (ENSCARG00000069588)	mybpc3 (ENSCARG00000070050) #22	lin7c (ENSCARG00000070271)	bdnf (ENSCARG00000070275)	kif18a (ENSCARG00000070279)	mettl15 (ENSCARG00000070282)	ENSCARG00000070283	lgr4 (ENSCARG00000070285)	KCNA4 (ENSCARG00000070287)	gfGTHIbeta-2 (ENSCARG00000070289)	arl14ep (ENSCARG00000070291)	spi1b (ENSCARG00000070292) #21	slc39a13 (ENSCARG00000070293) #20	ENSCARG00000070294	GAS2 (ENSCARG00000070295)	slc17a6b (ENSCARG00000070297)	ano5b (ENSCARG00000070338)
Cyprininae_a	ANCESTRAL SPECIES	336	ENSGT00390000011359.n	ENSGT00940000153941.b.f	ENSGT00940000158943.c.b	ENSGT00550000074781.z	ENSGT00390000012336.a	ENSGT00940000155164.a.b.c	ENSGT00530000063335.A.u.b	ENSGT00530000063675.a.l	ENSGT01040000240503.A.a.a.c.a	ENSGT00390000018400.c.b	ENSGT00390000008152.B.b.a	ENSGT00940000156969.rc	ENSGT00940000159637.o	ENSGT00940000153362.b.i	ENSGT00390000006347.a.b	ENSGT00940000157698.b.g #22	ENSGT00940000153222.a.b.b.b.a.c	ENSGT00390000007725.B.d.c.a	ENSGT00940000169309.c	ENSGT00390000014756.a	ENSGT00940000157925.h	ENSGT00940000162248.c	ENSGT00940000161285.b.a.a	ENSGT00940000156586.q
Common carp reference	MODERN SPECIES	6	mcee (ENSCCRG00000080275)	ENSCCRG00000015086	terb2 (ENSCCRG00000015089)	ENSCCRG00000025262	ENSCCRG00000046323	GOLM2 (ENSCCRG00000062777)	ctdspl2b (ENSCCRG00000077724)	ENSCCRG00000073663	eif3jb (ENSCCRG00000046436)	cilp (ENSCCRG00000066636)	IGDCC3 (ENSCCRG00000067987)	IGDCC4 (ENSCCRG00000046156)	ENSCCRG00000080079	nap1l4b (ENSCCRG00000045417)	cars1 (ENSCCRG00000079102)	mybpc3 (ENSCCRG00000034143) #22	ENSCCRG00000064836	lin7c (ENSCCRG00000063672)	bdnf (ENSCCRG00000071129)	kif18a (ENSCCRG00000008510)	mettl15 (ENSCCRG00000053099)	lgr4 (ENSCCRG00000054845)	KCNA4 (ENSCCRG00000082204)	fshb (ENSCCRG00000082746)	arl14ep (ENSCCRG00000016675)	ENSCCRG00000016730	spi1b (ENSCCRG00000016682) #21	slc39a13 (ENSCCRG00000082859) #20	ENSCCRG00000069513	GAS2 (ENSCCRG00000042230)	slc17a6b (ENSCCRG00000042244)
Golden-line barbel	MODERN SPECIES	195	mcee (ENSSGRG00000026521)	APBA2 (ENSSGRG00000026359)	sord (ENSSGRG00000026328)	ENSSGRG00000026327	terb2 (ENSSGRG00000026326)	TJP1 (ENSSGRG00000021735)	ENSSGRG00000021690	GOLM2 (ENSSGRG00000021689)	ctdspl2b (ENSSGRG00000021561)	eif3jb (ENSSGRG00000021556)	cilp (ENSSGRG00000021553)	IGDCC3 (ENSSGRG00000021548)	IGDCC4 (ENSSGRG00000021547)	nap1l4b (ENSSGRG00000021436)	cars1 (ENSSGRG00000021316)	mybpc3 (ENSSGRG00000018487) #22	lin7c (ENSSGRG00000018421)	bdnf (ENSSGRG00000018419)	kif18a (ENSSGRG00000018418)	mettl15 (ENSSGRG00000018417)	bnc2 (ENSSGRG00000018415)	ENSSGRG00000018414	sh3gl2a (ENSSGRG00000018412)	ENSSGRG00000018411	ENSSGRG00000018409	trmo (ENSSGRG00000018407)	anp32b (ENSSGRG00000018405)	coro2aa (ENSSGRG00000018385)	uso1 (ENSSGRG00000017116)	g3bp2a (ENSSGRG00000017096)	ints12 (ENSSGRG00000017090)
Cyprininae	ANCESTRAL SPECIES	1	ENSGT00940000153941.b.e	ENSGT00940000158943.c.a	ENSGT00550000074781.y	ENSGT00390000012336.b	ENSGT00940000155164.a.b.d	ENSGT00530000063335.A.v	ENSGT00530000063675.a.k	ENSGT01040000240503.A.a.a.c.b	ENSGT00950000182957.a.a.b.gc	ENSGT00390000018400.c.a	ENSGT00390000008152.B.b.b	ENSGT00940000156969.sc	ENSGT00940000159637.p	ENSGT00940000153362.b.j	ENSGT00390000006347.a.a	ENSGT00940000157698.b.h #22	ENSGT00940000153222.a.b.b.b.a.d	ENSGT00390000007725.B.d.c.b	ENSGT00940000169309.d	ENSGT00390000014756.b	ENSGT00940000157925.g	ENSGT00940000162248.d	ENSGT00940000161285.b.b	ENSGT00940000156586.r.a	ENSGT00940000159754.a.b #21	ENSGT00940000157349.ob.b.a #20	ENSGT00390000015299.a.a.a.b	ENSGT00940000155755.a.b.b	ENSGT00940000155891.c.b.h	ENSGT00940000155692.j.f	ENSGT00390000011846.d
Goldfish	MODERN SPECIES	47	sord (ENSCARG00000036183)	terb2 (ENSCARG00000036204)	TJP1 (ENSCARG00000036423)	ENSCARG00000040474	ENTREP2 (ENSCARG00000040497)	ENSCARG00000040617	GOLM2 (ENSCARG00000040640)	ctdspl2b (ENSCARG00000040694)	ENSCARG00000040766	eif3jb (ENSCARG00000040780)	cilp (ENSCARG00000040796)	IGDCC3 (ENSCARG00000040837)	IGDCC4 (ENSCARG00000041128)	nap1l4b (ENSCARG00000041276)	cars1 (ENSCARG00000041548)	mybpc3 (ENSCARG00000047417) #22	lin7c (ENSCARG00000056266)	kif18a (ENSCARG00000056375)	ENSCARG00000056413	mettl15 (ENSCARG00000056431)	lgr4 (ENSCARG00000056464)	KCNA4 (ENSCARG00000056543)	cgba (ENSCARG00000056552)	arl14ep (ENSCARG00000056569)	si:ch73-314g15.3 (ENSCARG00000056588)	spi1b (ENSCARG00000056617) #21	slc39a13 (ENSCARG00000056671) #20	ENSCARG00000056748	GAS2 (ENSCARG00000056761)	slc17a6b (ENSCARG00000056818)	ano5b (ENSCARG00000057097)
Cyprininae_a	ANCESTRAL SPECIES	2	ENSGT00940000153941.b.e	ENSGT00940000158943.c.a	ENSGT00550000074781.y	ENSGT00390000012336.b	ENSGT00940000155164.a.b.d	ENSGT00530000063335.A.v	ENSGT00530000063675.a.k	ENSGT01040000240503.A.a.a.c.b	ENSGT00950000182957.a.a.b.gc	ENSGT00390000018400.c.a	ENSGT00390000008152.B.b.b	ENSGT00940000156969.sc	ENSGT00940000159637.p	ENSGT00940000153362.b.j	ENSGT00390000006347.a.a	ENSGT00940000157698.b.h #22	ENSGT00940000153222.a.b.b.b.a.d	ENSGT00390000007725.B.d.c.b	ENSGT00940000169309.d	ENSGT00390000014756.b	ENSGT00940000157925.g	ENSGT00940000162248.d	ENSGT00940000156586.r.b	ENSGT00940000161285.b.a.b	ENSGT00940000156586.r.a	ENSGT00940000159754.a.b #21	ENSGT00940000157349.ob.b.a #20	ENSGT00390000015299.a.a.a.b	ENSGT00940000155755.a.b.b	ENSGT00940000155891.c.b.h	ENSGT00940000155692.j.f
Golden-line barbel	MODERN SPECIES	517									ctdspl2b (ENSSGRG00000023613)	eif3jb (ENSSGRG00000023604)	cilp (ENSSGRG00000023603)	IGDCC3 (ENSSGRG00000023601)	IGDCC4 (ENSSGRG00000023600)	nap1l4b (ENSSGRG00000023594)	cars1 (ENSSGRG00000023089)	mybpc3 (ENSSGRG00000021050) #22	lin7c (ENSSGRG00000020981)	kif18a (ENSSGRG00000020973)	mettl15 (ENSSGRG00000020972)	lgr4 (ENSSGRG00000020970)	KCNA4 (ENSSGRG00000020968)	fshb (ENSSGRG00000020967)	arl14ep (ENSSGRG00000020965)	si:ch73-314g15.3 (ENSSGRG00000020954)	spi1b (ENSSGRG00000020949) #21
Common carp reference	MODERN SPECIES		mcee (ENSCCRG00000061291)	ENSCCRG00000041297	sord (ENSCCRG00000046309)	terb2 (ENSCCRG00000064709)	ENSCCRG00000030902	ENSCCRG00000082755	GOLM2 (ENSCCRG00000046343)	ctdspl2b (ENSCCRG00000046426)	ENSCCRG00000056375	eif3jb (ENSCCRG00000080311)	cilp (ENSCCRG00000076695)	IGDCC3 (ENSCCRG00000031867)	IGDCC4 (ENSCCRG00000051893)	nap1l4b (ENSCCRG00000035234)	cars1 (ENSCCRG00000035219)	mybpc3 (ENSCCRG00000019569) #22	lin7c (ENSCCRG00000071961)	bdnf (ENSCCRG00000057127)	kif18a (ENSCCRG00000019531)	mettl15 (ENSCCRG00000082595)	lgr4 (ENSCCRG00000081461)	KCNA4 (ENSCCRG00000069395)	arl14ep (ENSCCRG00000065177)	si:ch73-314g15.3 (ENSCCRG00000075488)	spi1b (ENSCCRG00000065814) #21	slc39a13 (ENSCCRG00000016709) #20	ENSCCRG00000076104	GAS2 (ENSCCRG00000074422)	slc17a6b (ENSCCRG00000067206)	ano5b (ENSCCRG00000042702)	tssc4 (ENSCCRG00000071315)
Zebrafish	MODERN SPECIES	22	sord (ENSDARG00000053405)	ENSDARG00000105548	terb2 (ENSDARG00000039477)	TJP1 (ENSDARG00000077506)	ENTREP2 (ENSDARG00000053380)	ENSDARG00000109937	GOLM2 (ENSDARG00000074490)	ctdspl2b (ENSDARG00000060586)	ENSDARG00000079336	eif3jb (ENSDARG00000053370)	cilp (ENSDARG00000053362)	IGDCC3 (ENSDARG00000075158)	IGDCC4 (ENSDARG00000076919)	nap1l4b (ENSDARG00000068868)	cars1 (ENSDARG00000036164)	mybpc3 (ENSDARG00000011615) #22	lin7c (ENSDARG00000027322)	bdnf (ENSDARG00000018817)	kif18a (ENSDARG00000008022)	mettl15 (ENSDARG00000089236)	lgr4 (ENSDARG00000060542)	KCNA4 (ENSDARG00000078650)	fshb (ENSDARG00000010841)	arl14ep (ENSDARG00000001210)	si:ch73-314g15.3 (ENSDARG00000000423)	spi1b (ENSDARG00000000767) #21	slc39a13 (ENSDARG00000000442) #20	ENSDARG00000027394	GAS2 (ENSDARG00000036152)	slc17a6b (ENSDARG00000041150)	ano5b (ENSDARG00000036147)
Clupeiformes	ANCESTRAL SPECIES	302						ENSGT00940000156682.e.a	ENSGT00390000012529	ENSGT00940000154170.B	ENSGT00390000007857	ENSGT00390000017625.k	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000017828	ENSGT00940000157698.b #22	ENSGT00940000153222.a.b.b.b.a	ENSGT00390000007725.B.d	ENSGT00940000159058	ENSGT00390000014756	ENSGT00940000157925	ENSGT00940000162248	ENSGT00940000161285.b	ENSGT00940000156586
Atlantic herring	MODERN SPECIES	12	APBA2 (ENSCHAG00000015017)	mcee (ENSCHAG00000014946)	mphosph10 (ENSCHAG00000014805)	mtmr10 (ENSCHAG00000014308)	ENSCHAG00000014251	igf1rb (ENSCHAG00000010686)	heatr3 (ENSCHAG00000010274)	ankdd1a (ENSCHAG00000010156)	spg21 (ENSCHAG00000010137)	CLPX (ENSCHAG00000010004)	pdcd7 (ENSCHAG00000009985)	UBAP1L (ENSCHAG00000009975)	KBTBD13 (ENSCHAG00000009959)	rasl12 (ENSCHAG00000009949)	mtfmt (ENSCHAG00000009903)	mybpc3 (ENSCHAG00000006886) #22	lin7c (ENSCHAG00000006687)	bdnf (ENSCHAG00000006667)	KIF18A (ENSCHAG00000006597)	mettl15 (ENSCHAG00000006571)	lgr4 (ENSCHAG00000006519)	KCNA4 (ENSCHAG00000006510)	ENSCHAG00000006484	arl14ep (ENSCHAG00000006478)	HSBP1 (ENSCHAG00000006439)	ANPEP (ENSCHAG00000005920)	ANPEP (ENSCHAG00000005419)	ENSCHAG00000005002	mespaa (ENSCHAG00000004956)	mespba (ENSCHAG00000004927)	sv2ba (ENSCHAG00000004568)
Euteleosteomorpha	ANCESTRAL SPECIES	48			ENSGT00950000182885.A.a.e	ENSGT00940000156912.c.a	ENSGT00940000158805.a	ENSGT00940000159515.c.b	ENSGT00940000158300.f	ENSGT00390000011846	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00390000004737.b.a	ENSGT00940000157180.b	ENSGT00390000001149	ENSGT00730000110905.a	ENSGT00390000007087	ENSGT00940000171027	ENSGT00940000161192	ENSGT00940000156620
Acanthomorphata	ANCESTRAL SPECIES	18									ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00390000004737.b.a	ENSGT00940000157180.b	ENSGT00390000001149	ENSGT00730000110905.a	ENSGT00390000007087	ENSGT00940000171027	ENSGT00940000161192	ENSGT00940000156620
Euacanthomorphacea	ANCESTRAL SPECIES	25	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a
Percomorphaceae	ANCESTRAL SPECIES	15	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000168098	ENSGT00500000044924	ENSGT00940000159903	ENSGT00940000162823.C.b	ENSGT00940000163403
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00990000204739	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000168098	ENSGT00500000044924	ENSGT00940000159903	ENSGT01020000230389.a.b	ENSGT00940000163403
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00990000204739	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT00940000159903	ENSGT01020000230389.a.b	ENSGT00940000163403
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615
Ballan wrasse	MODERN SPECIES	48	TJP1 (ENSLBEG00000001272)	ENTREP2 (ENSLBEG00000001361)	GOLM2 (ENSLBEG00000001384)	CTDSPL2 (ENSLBEG00000001465)	ENSLBEG00000001541	eif3jb (ENSLBEG00000001665)	cilp (ENSLBEG00000001703)	IGDCC3 (ENSLBEG00000001732)	ENSLBEG00000001786	ano5b (ENSLBEG00000001808)	slc17a6b (ENSLBEG00000001903)	GAS2 (ENSLBEG00000001984)	ENSLBEG00000002112	slc39a13 (ENSLBEG00000002129) #20	spi1b (ENSLBEG00000002152) #21	mybpc3 (ENSLBEG00000002172) #22	lgr4 (ENSLBEG00000002279)	mettl15 (ENSLBEG00000002469)	ENSLBEG00000002524	ENSLBEG00000002591	bdnf (ENSLBEG00000002609)	lin7c (ENSLBEG00000002646)	rplp2l (ENSLBEG00000002674)	ENSLBEG00000002707	mcee (ENSLBEG00000002726)	mphosph10 (ENSLBEG00000002748)	ist1 (ENSLBEG00000002854)	ENSLBEG00000002867	dhodh (ENSLBEG00000002895)	ENSLBEG00000002938	ENSLBEG00000002957
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615
Perciformes	ANCESTRAL SPECIES	15	ENSGT00550000074781	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615
Cottioidei	ANCESTRAL SPECIES	13	ENSGT00550000074781	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000168098	ENSGT00500000044924	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615
Lumpfish	MODERN SPECIES	18	TJP1 (ENSCLMG00005007347)	ENTREP2 (ENSCLMG00005007292)	ENSCLMG00005007291	GOLM2 (ENSCLMG00005007290)	CTDSPL2 (ENSCLMG00005007280)	eif3jb (ENSCLMG00005007276)	cilp (ENSCLMG00005007275)	IGDCC3 (ENSCLMG00005007273)	ano5b (ENSCLMG00005005390)	slc17a6b (ENSCLMG00005005369)	ENSCLMG00005005367	GAS2 (ENSCLMG00005005333)	ENSCLMG00005005327	slc39a13 (ENSCLMG00005005313) #20	spi1b (ENSCLMG00005005308) #21	mybpc3 (ENSCLMG00005002133) #22	lgr4 (ENSCLMG00005002110)	mettl15 (ENSCLMG00005002109)	ENSCLMG00005002108	bdnf (ENSCLMG00005002106)	lin7c (ENSCLMG00005002104)	rplp2l (ENSCLMG00005002101)	FTH1 (ENSCLMG00005002100)	mcee (ENSCLMG00005002097)	mphosph10 (ENSCLMG00005002069)	ist1 (ENSCLMG00005002061)	dhodh (ENSCLMG00005002053)	ENSCLMG00005002041	sult5a1 (ENSCLMG00005002019)	dpep1 (ENSCLMG00005002015)	SLC22A31 (ENSCLMG00005002014)
Stickleback	MODERN SPECIES	1	sord (ENSGACG00000015578)	TJP1 (ENSGACG00000015573)	ENTREP2 (ENSGACG00000015570)	GOLM2 (ENSGACG00000015566)	CTDSPL2 (ENSGACG00000015558)	ENSGACG00000015557	eif3jb (ENSGACG00000015551)	cilp (ENSGACG00000015550)	IGDCC3 (ENSGACG00000015547)	ano5b (ENSGACG00000015544)	slc17a6b (ENSGACG00000015543)	GAS2 (ENSGACG00000015541)	ENSGACG00000015539	slc39a13 (ENSGACG00000015530) #20	spi1b (ENSGACG00000015525) #21	mybpc3 (ENSGACG00000015517) #22	lgr4 (ENSGACG00000015514)	mettl15 (ENSGACG00000015510)	ENSGACG00000015507	ENSGACG00000015505	bdnf (ENSGACG00000015502)	lin7c (ENSGACG00000015500)	rplp2l (ENSGACG00000015499)	FTH1 (ENSGACG00000015484)	mcee (ENSGACG00000015483)	mphosph10 (ENSGACG00000015478)	ist1 (ENSGACG00000015470)	ENSGACG00000015469	dhodh (ENSGACG00000015466)	sult5a1 (ENSGACG00000015459)	dpep1 (ENSGACG00000015454)
Perciformes_a	ANCESTRAL SPECIES	13	ENSGT00550000074781	ENSGT00940000175427	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615
Channel bull blenny	MODERN SPECIES	17	APBA2 (ENSCGOG00000003477)	sord (ENSCGOG00000003459)	TJP1 (ENSCGOG00000003360)	ENTREP2 (ENSCGOG00000003352)	GOLM2 (ENSCGOG00000003348)	CTDSPL2 (ENSCGOG00000002961)	eif3jb (ENSCGOG00000002950)	cilp (ENSCGOG00000002930)	IGDCC3 (ENSCGOG00000002920)	ano5b (ENSCGOG00000002152)	slc17a6b (ENSCGOG00000001358)	GAS2 (ENSCGOG00000001255)	ENSCGOG00000001253	slc39a13 (ENSCGOG00000001241) #20	spi1b (ENSCGOG00000001234) #21	mybpc3 (ENSCGOG00000000806) #22	lgr4 (ENSCGOG00000000638)	mettl15 (ENSCGOG00000000632)	ENSCGOG00000000605	bdnf (ENSCGOG00000000595)	lin7c (ENSCGOG00000000568)	rplp2l (ENSCGOG00000000556)	ENSCGOG00000000498	mcee (ENSCGOG00000000460)	mphosph10 (ENSCGOG00000022206)	ist1 (ENSCGOG00000022195)	dhodh (ENSCGOG00000022193)	ENSCGOG00000022192	sult5a1 (ENSCGOG00000022191)	ENSCGOG00000022190	dpep1 (ENSCGOG00000022168)
Pike perch	MODERN SPECIES	44	ENSSLUG00000012093	TJP1 (ENSSLUG00000011395)	ENTREP2 (ENSSLUG00000011342)	ENSSLUG00000011340	GOLM2 (ENSSLUG00000011334)	CTDSPL2 (ENSSLUG00000011274)	eif3jb (ENSSLUG00000011258)	cilp (ENSSLUG00000011255)	IGDCC3 (ENSSLUG00000011251)	ano5b (ENSSLUG00000011122)	slc17a6b (ENSSLUG00000008971)	GAS2 (ENSSLUG00000008875)	ENSSLUG00000008870	slc39a13 (ENSSLUG00000008864) #20	spi1b (ENSSLUG00000008852) #21	mybpc3 (ENSSLUG00000008578) #22	lgr4 (ENSSLUG00000008500)	ENSSLUG00000008490	mettl15 (ENSSLUG00000008487)	ENSSLUG00000008164	bdnf (ENSSLUG00000008139)	lin7c (ENSSLUG00000008135)	rplp2l (ENSSLUG00000008127)	FTH1 (ENSSLUG00000008122)	mcee (ENSSLUG00000008116)	mphosph10 (ENSSLUG00000007775)	ist1 (ENSSLUG00000007721)	ENSSLUG00000007710	dhodh (ENSSLUG00000007690)	ENSSLUG00000007681	sult5a1 (ENSSLUG00000007678)
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00500000044924	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615	ENSGT00940000162670
Gilthead seabream	MODERN SPECIES	18	ENSSAUG00010009794	ENTREP2 (ENSSAUG00010009788)	GOLM2 (ENSSAUG00010009781)	CTDSPL2 (ENSSAUG00010009763)	ENSSAUG00010009752	eif3jb (ENSSAUG00010009746)	cilp (ENSSAUG00010009743)	ENSSAUG00010009742	IGDCC3 (ENSSAUG00010009738)	ano5b (ENSSAUG00010009708)	slc17a6b (ENSSAUG00010007505)	GAS2 (ENSSAUG00010007478)	ENSSAUG00010007477	slc39a13 (ENSSAUG00010007475) #20	spi1b (ENSSAUG00010007470) #21	mybpc3 (ENSSAUG00010002513) #22	lgr4 (ENSSAUG00010002415)	mettl15 (ENSSAUG00010002392)	ENSSAUG00010002367	bdnf (ENSSAUG00010002343)	lin7c (ENSSAUG00010002330)	rplp2l (ENSSAUG00010002322)	ENSSAUG00010002318	mcee (ENSSAUG00010002300)	mphosph10 (ENSSAUG00010002283)	ist1 (ENSSAUG00010002268)	dhodh (ENSSAUG00010002205)	ENSSAUG00010002182	sult5a1 (ENSSAUG00010002173)	dpep1 (ENSSAUG00010002165)	SLC22A31 (ENSSAUG00010002159)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00500000044924	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615	ENSGT00940000162670
European seabass	MODERN SPECIES	18	terb2 (ENSDLAG00005019802)	ENSDLAG00005019863	ENSDLAG00005021133	GOLM2 (ENSDLAG00005032496)	CTDSPL2 (ENSDLAG00005021146)	ENSDLAG00005035065	eif3jb (ENSDLAG00005021188)	cilp (ENSDLAG00005021196)	ENSDLAG00005021202	ano5b (ENSDLAG00005021229)	slc17a6b (ENSDLAG00005021374)	GAS2 (ENSDLAG00005021597)	ENSDLAG00005026694	slc39a13 (ENSDLAG00005021606) #20	spi1b (ENSDLAG00005034390) #21	MYBPC3 (ENSDLAG00005021643) #22	lgr4 (ENSDLAG00005032749)	mettl15 (ENSDLAG00005022115)	ENSDLAG00005022120	bdnf (ENSDLAG00005031192)	lin7c (ENSDLAG00005031763)	ENSDLAG00005022166	ENSDLAG00005022170	ENSDLAG00005032560	ENSDLAG00005022187	ist1 (ENSDLAG00005030321)	dhodh (ENSDLAG00005022215)	ENSDLAG00005022256	sult5a1 (ENSDLAG00005022257)	dpep1 (ENSDLAG00005022269)	SLC22A31 (ENSDLAG00005022297)
Large yellow croaker	MODERN SPECIES	480	sord (ENSLCRG00005013106)	terb2 (ENSLCRG00005013103)	TJP1 (ENSLCRG00005013070)	ENTREP2 (ENSLCRG00005013060)	GOLM2 (ENSLCRG00005013056)	CTDSPL2 (ENSLCRG00005013054)	eif3jb (ENSLCRG00005013051)	cilp (ENSLCRG00005013048)	IGDCC3 (ENSLCRG00005013045)	ano5b (ENSLCRG00005010264)	slc17a6b (ENSLCRG00005009974)	GAS2 (ENSLCRG00005009962)	ENSLCRG00005009961	slc39a13 (ENSLCRG00005009959) #20	spi1b (ENSLCRG00005009957) #21	mybpc3 (ENSLCRG00005007718) #22	lgr4 (ENSLCRG00005007681)	mettl15 (ENSLCRG00005007673)	ENSLCRG00005007660	bdnf (ENSLCRG00005007654)	lin7c (ENSLCRG00005007644)	rplp2l (ENSLCRG00005007641)	ENSLCRG00005007638	mcee (ENSLCRG00005007636)	mphosph10 (ENSLCRG00005007626)	ist1 (ENSLCRG00005007616)	dhodh (ENSLCRG00005007579)	ENSLCRG00005007575	sult5a1 (ENSLCRG00005007571)	dpep1 (ENSLCRG00005007467)	SLC22A31 (ENSLCRG00005007465)
Tetraodontidae	ANCESTRAL SPECIES	4	ENSGT00550000074781	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00500000044924	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000162670	ENSGT00940000155966.eb	ENSGT00940000159615
Fugu	MODERN SPECIES	4	sord (ENSTRUG00000017286)	terb2 (ENSTRUG00000032993)	TJP1 (ENSTRUG00000017285)	ENTREP2 (ENSTRUG00000017284)	GOLM2 (ENSTRUG00000017283)	CTDSPL2 (ENSTRUG00000017282)	eif3jb (ENSTRUG00000017281)	cilp (ENSTRUG00000017280)	IGDCC3 (ENSTRUG00000017279)	ano5b (ENSTRUG00000017278)	slc17a6b (ENSTRUG00000017277)	GAS2 (ENSTRUG00000027083)	ENSTRUG00000017275	slc39a13 (ENSTRUG00000025267) #20	spi1b (ENSTRUG00000019770) #21	mybpc3 (ENSTRUG00000017272) #22	lgr4 (ENSTRUG00000017271)	mettl15 (ENSTRUG00000017270)	ENSTRUG00000017269	bdnf (ENSTRUG00000017268)	lin7c (ENSTRUG00000017267)	FTH1 (ENSTRUG00000030687)	mcee (ENSTRUG00000033128)	mphosph10 (ENSTRUG00000017264)	ist1 (ENSTRUG00000022449)	dhodh (ENSTRUG00000017261)	ENSTRUG00000017260	sult5a1 (ENSTRUG00000017259)	SLC22A31 (ENSTRUG00000017257)	ENSTRUG00000032705	dpep1 (ENSTRUG00000017258)
Tetraodon	MODERN SPECIES	20	APBA2 (ENSTNIG00000009394)	sord (ENSTNIG00000009395)	TJP1 (ENSTNIG00000009396)	ENTREP2 (ENSTNIG00000009397)	ENSTNIG00000006725	GOLM2 (ENSTNIG00000009398)	ENSTNIG00000009399	eif3jb (ENSTNIG00000009400)	cilp (ENSTNIG00000009401)	IGDCC3 (ENSTNIG00000009402)	ano5b (ENSTNIG00000009403)	slc17a6b (ENSTNIG00000009404)	GAS2 (ENSTNIG00000009405)	slc39a13 (ENSTNIG00000009406) #20	spi1b (ENSTNIG00000009407) #21	mybpc3 (ENSTNIG00000009408) #22	lgr4 (ENSTNIG00000009409)	mettl15 (ENSTNIG00000009410)	ENSTNIG00000009411	SPG7 (ENSTNIG00000009412)	cdh15 (ENSTNIG00000009413)	ACSF3 (ENSTNIG00000009414)	CBFA2T3 (ENSTNIG00000009415)	PABPN1L (ENSTNIG00000009416)	trappc2l (ENSTNIG00000009417)	galns (ENSTNIG00000009418)	cmtm3 (ENSTNIG00000009419)	cmtm4 (ENSTNIG00000009420)	dync1li2 (ENSTNIG00000009421)	ENSTNIG00000009422	nae1 (ENSTNIG00000009423)
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00990000204739	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT00940000159903	ENSGT01020000230389.a.b	ENSGT00940000163403
Carangaria	ANCESTRAL SPECIES	11	ENSGT00550000074781	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615
Carangaria_A	ANCESTRAL SPECIES	19	ENSGT00550000074781	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00500000044924	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615	ENSGT00940000162670
Barramundi perch	MODERN SPECIES	328							eif3jb (ENSLCAG00010020484)	cilp (ENSLCAG00010020482)	IGDCC3 (ENSLCAG00010020466)	ano5b (ENSLCAG00010020226)	slc17a6b (ENSLCAG00010019823)	GAS2 (ENSLCAG00010019761)	ENSLCAG00010019760	slc39a13 (ENSLCAG00010019756) #20	spi1b (ENSLCAG00010019749) #21	mybpc3 (ENSLCAG00010019627) #22	lgr4 (ENSLCAG00010019581)	mettl15 (ENSLCAG00010019576)	ENSLCAG00010019567	bdnf (ENSLCAG00010019558)	lin7c (ENSLCAG00010019544)	rplp2l (ENSLCAG00010019539)	mcee (ENSLCAG00010019534)	mphosph10 (ENSLCAG00010019507)	ist1 (ENSLCAG00010019499)	dhodh (ENSLCAG00010019492)	ENSLCAG00010019490	sult5a1 (ENSLCAG00010019457)	dpep1 (ENSLCAG00010019444)
Seriola	ANCESTRAL SPECIES	52	ENSGT00550000074781	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00500000044924	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615	ENSGT00940000162670
Greater amberjack	DUPLICATION
Greater amberjack	MODERN SPECIES	233	TJP1 (ENSSDUG00000008372)	ENTREP2 (ENSSDUG00000008305)	GOLM2 (ENSSDUG00000008268)	CTDSPL2 (ENSSDUG00000008234)	ENSSDUG00000008195	eif3jb (ENSSDUG00000008165)	cilp (ENSSDUG00000008136)	IGDCC3 (ENSSDUG00000008094)	ano5b (ENSSDUG00000008042)	slc17a6b (ENSSDUG00000008022)	GAS2 (ENSSDUG00000008010)	ENSSDUG00000007999	slc39a13 (ENSSDUG00000007989) #20	spi1b (ENSSDUG00000007962) #21	ENSSDUG00000007953 #22	mybpc3 (ENSSDUG00000007921) #22	lgr4 (ENSSDUG00000007656)	mettl15 (ENSSDUG00000007618)	ENSSDUG00000007518	bdnf (ENSSDUG00000007503)	lin7c (ENSSDUG00000007454)	rplp2l (ENSSDUG00000007436)	ENSSDUG00000007415	mcee (ENSSDUG00000007405)	mphosph10 (ENSSDUG00000007381)	ist1 (ENSSDUG00000007365)	ENSSDUG00000007359	ENSSDUG00000007352	dhodh (ENSSDUG00000007317)	sult5a1 (ENSSDUG00000007303)	dpep1 (ENSSDUG00000007274)
Greater amberjack	MODERN SPECIES	233	terb2 (ENSSDUG00000008511)	TJP1 (ENSSDUG00000008372)	ENTREP2 (ENSSDUG00000008305)	GOLM2 (ENSSDUG00000008268)	CTDSPL2 (ENSSDUG00000008234)	ENSSDUG00000008195	eif3jb (ENSSDUG00000008165)	cilp (ENSSDUG00000008136)	IGDCC3 (ENSSDUG00000008094)	ano5b (ENSSDUG00000008042)	slc17a6b (ENSSDUG00000008022)	GAS2 (ENSSDUG00000008010)	ENSSDUG00000007999	slc39a13 (ENSSDUG00000007989) #20	spi1b (ENSSDUG00000007962) #21	ENSSDUG00000007953 #22	mybpc3 (ENSSDUG00000007921) #22	lgr4 (ENSSDUG00000007656)	mettl15 (ENSSDUG00000007618)	ENSSDUG00000007518	bdnf (ENSSDUG00000007503)	lin7c (ENSSDUG00000007454)	rplp2l (ENSSDUG00000007436)	ENSSDUG00000007415	mcee (ENSSDUG00000007405)	mphosph10 (ENSSDUG00000007381)	ist1 (ENSSDUG00000007365)	ENSSDUG00000007359	ENSSDUG00000007352	dhodh (ENSSDUG00000007317)	sult5a1 (ENSSDUG00000007303)
Yellowtail amberjack	MODERN SPECIES	3074									IGDCC3 (ENSSLDG00000021057)	ano5b (ENSSLDG00000021091)	slc17a6b (ENSSLDG00000021150)	GAS2 (ENSSLDG00000021189)	ENSSLDG00000021202	slc39a13 (ENSSLDG00000021223) #20	spi1b (ENSSLDG00000021251) #21	mybpc3 (ENSSLDG00000021272) #22	lgr4 (ENSSLDG00000021336)	mettl15 (ENSSLDG00000021387)	ENSSLDG00000021403	bdnf (ENSSLDG00000021430)	lin7c (ENSSLDG00000021436)	rplp2l (ENSSLDG00000021441)	ENSSLDG00000021450	mcee (ENSSLDG00000021467)	mphosph10 (ENSSLDG00000021481)	ist1 (ENSSLDG00000021497)	dhodh (ENSSLDG00000021516)	ENSSLDG00000021545	ENSSLDG00000021555	sult5a1 (ENSSLDG00000021569)	dpep1 (ENSSLDG00000021578)
Pleuronectoidei	ANCESTRAL SPECIES	10	ENSGT00550000074781	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT00940000159615	ENSGT00940000163403	ENSGT00940000162670
Turbot	MODERN SPECIES	17	sord (ENSSMAG00000021387)	terb2 (ENSSMAG00000021386)	ENSSMAG00000021385	ENSSMAG00000031934	GOLM2 (ENSSMAG00000021383)	ENSSMAG00000021382	eif3jb (ENSSMAG00000021380)	cilp (ENSSMAG00000021379)	ENSSMAG00000021378	ano5b (ENSSMAG00000021377)	slc17a6b (ENSSMAG00000021376)	GAS2 (ENSSMAG00000021375)	ENSSMAG00000022967	slc39a13 (ENSSMAG00000021373) #20	spi1b (ENSSMAG00000025479) #21	MYBPC3 (ENSSMAG00000021371) #22	lgr4 (ENSSMAG00000021370)	mettl15 (ENSSMAG00000021369)	bdnf (ENSSMAG00000029473)	KIF18A (ENSSMAG00000021368)	lin7c (ENSSMAG00000024571)	ENSSMAG00000024542	ENSSMAG00000025209	ENSSMAG00000021363	ENSSMAG00000021362	ist1 (ENSSMAG00000021361)	ENSSMAG00000021359	sult5a1 (ENSSMAG00000021356)	SLC22A31 (ENSSMAG00000021354)	ANKRD11 (ENSSMAG00000021353)	ENSSMAG00000021355
Tongue sole	MODERN SPECIES	15	ENSCSEG00000001102	dync1li2 (ENSCSEG00000001106)	cmtm4 (ENSCSEG00000001121)	cmtm3 (ENSCSEG00000001124)	ENSCSEG00000001131	galns (ENSCSEG00000001134)	trappc2l (ENSCSEG00000001136)	pabpn1l (ENSCSEG00000001142)	CBFA2T3 (ENSCSEG00000001154)	ACSF3 (ENSCSEG00000001161)	cdh15 (ENSCSEG00000001171)	SPG7 (ENSCSEG00000001177)	ENSCSEG00000001204	slc39a13 (ENSCSEG00000001215) #20	spi1b (ENSCSEG00000001226) #21	mybpc3 (ENSCSEG00000001236) #22	lgr4 (ENSCSEG00000001253)	mettl15 (ENSCSEG00000001264)	ENSCSEG00000001271	ENSCSEG00000001334	bdnf (ENSCSEG00000001337)	lin7c (ENSCSEG00000001340)	rplp2l (ENSCSEG00000001350)	ENSCSEG00000001355	mcee (ENSCSEG00000001360)	mphosph10 (ENSCSEG00000001365)	ist1 (ENSCSEG00000001368)	ENSCSEG00000001374	dhodh (ENSCSEG00000001376)	ENSCSEG00000001393	ENSCSEG00000001396
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00990000204739	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000168098	ENSGT00500000044924	ENSGT00940000159903	ENSGT01020000230389.a.b	ENSGT00940000163403
Zig-zag eel	MODERN SPECIES	17	terb2 (ENSMAMG00000000409)	ENSMAMG00000000485	ENSMAMG00000000671	ENSMAMG00000028398	GOLM2 (ENSMAMG00000000728)	ENSMAMG00000000780	eif3jb (ENSMAMG00000000869)	cilp (ENSMAMG00000000901)	ENSMAMG00000000957	ano5b (ENSMAMG00000001015)	slc17a6b (ENSMAMG00000001158)	GAS2 (ENSMAMG00000001212)	ENSMAMG00000028736	slc39a13 (ENSMAMG00000001253) #20	spi1b (ENSMAMG00000028455) #21	MYBPC3 (ENSMAMG00000001346) #22	lgr4 (ENSMAMG00000001404)	mettl15 (ENSMAMG00000001437)	ENSMAMG00000001450	bdnf (ENSMAMG00000001503)	lin7c (ENSMAMG00000027875)	ENSMAMG00000001544	ENSMAMG00000028600	ENSMAMG00000001575	ENSMAMG00000001587	ist1 (ENSMAMG00000024849)	ENSMAMG00000028558	dhodh (ENSMAMG00000001638)	HPR (ENSMAMG00000025366)	sult5a1 (ENSMAMG00000001721)	dpep1 (ENSMAMG00000001775)
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00990000204739	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00500000044924	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615	ENSGT00940000162670
Climbing perch	MODERN SPECIES	16	terb2 (ENSATEG00000008159)	ENSATEG00000008213	ENSATEG00000008397	ENSATEG00000027147	GOLM2 (ENSATEG00000008439)	ENSATEG00000008489	eif3jb (ENSATEG00000008562)	cilp (ENSATEG00000008599)	ENSATEG00000008611	ano5b (ENSATEG00000008664)	slc17a6b (ENSATEG00000008752)	GAS2 (ENSATEG00000008810)	ENSATEG00000008924	slc39a13 (ENSATEG00000008947) #20	spi1b (ENSATEG00000026174) #21	MYBPC3 (ENSATEG00000009165) #22	lgr4 (ENSATEG00000025470)	mettl15 (ENSATEG00000025941)	ENSATEG00000010989	bdnf (ENSATEG00000011007)	lin7c (ENSATEG00000027127)	ENSATEG00000011083	ENSATEG00000011089	ENSATEG00000028147	ENSATEG00000011131	ist1 (ENSATEG00000011140)	dhodh (ENSATEG00000011177)	ENSATEG00000011210	sult5a1 (ENSATEG00000011268)	dpep1 (ENSATEG00000011300)	SLC22A31 (ENSATEG00000011338)
Siamese fighting fish	MODERN SPECIES	14	GOLM2 (ENSBSLG00000021251)	CTDSPL2 (ENSBSLG00000021336)	ENSBSLG00000021646	eif3jb (ENSBSLG00000021653)	cilp (ENSBSLG00000021659)	IGDCC3 (ENSBSLG00000021720)	ano5b (ENSBSLG00000021851)	slc17a6b (ENSBSLG00000022146)	GAS2 (ENSBSLG00000022554)	ENSBSLG00000022564	slc39a13 (ENSBSLG00000022604) #20	spi1b (ENSBSLG00000022624) #21	slc17a6b (ENSBSLG00000022646)	ENSBSLG00000022731	ENSBSLG00000022761	mybpc3 (ENSBSLG00000022776) #22	lgr4 (ENSBSLG00000023583)	mettl15 (ENSBSLG00000023787)	ENSBSLG00000023791	bdnf (ENSBSLG00000023818)	lin7c (ENSBSLG00000023819)	ENSBSLG00000023828	FTH1 (ENSBSLG00000023831)	mcee (ENSBSLG00000023849)	mphosph10 (ENSBSLG00000023904)	ist1 (ENSBSLG00000023982)	dhodh (ENSBSLG00000024005)	ENSBSLG00000024019	sult5a1 (ENSBSLG00000024025)	dpep1 (ENSBSLG00000024047)	SLC22A31 (ENSBSLG00000024061)
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT00940000159903	ENSGT00940000162823.C.b	ENSGT00940000163403
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000168098	ENSGT00500000044924	ENSGT00940000159903	ENSGT01020000230389.a.b	ENSGT00940000163403
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000168098	ENSGT00500000044924	ENSGT00940000159903	ENSGT00940000163403	ENSGT00940000159615
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000168098	ENSGT00500000044924	ENSGT00940000159903	ENSGT00940000163403	ENSGT00940000159615
NAME_4	ANCESTRAL SPECIES	6	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00500000044924	ENSGT00940000162823.C.b	ENSGT00940000163403	ENSGT00940000159615	ENSGT00940000162670
Mummichog	MODERN SPECIES	406	terb2 (ENSFHEG00000019635)	TJP1 (ENSFHEG00000019624)	ENTREP2 (ENSFHEG00000019536)	GOLM2 (ENSFHEG00000019514)	CTDSPL2 (ENSFHEG00000019501)	eif3jb (ENSFHEG00000019467)	cilp (ENSFHEG00000019428)	IGDCC3 (ENSFHEG00000019395)	ano5b (ENSFHEG00000019355)	slc17a6b (ENSFHEG00000019339)	GAS2 (ENSFHEG00000019307)	ENSFHEG00000019266	ENSFHEG00000019245	slc39a13 (ENSFHEG00000019229) #20	spi1b (ENSFHEG00000019224) #21	mybpc3 (ENSFHEG00000019179) #22	lgr4 (ENSFHEG00000018994)	mettl15 (ENSFHEG00000018955)	ENSFHEG00000018946	bdnf (ENSFHEG00000018941)	lin7c (ENSFHEG00000018938)	rplp2l (ENSFHEG00000018917)	FTH1 (ENSFHEG00000018910)	mcee (ENSFHEG00000018871)	mphosph10 (ENSFHEG00000018862)	ist1 (ENSFHEG00000018849)	dhodh (ENSFHEG00000000486)	ENSFHEG00000018801	ENSFHEG00000018789	sult5a1 (ENSFHEG00000018766)	dpep1 (ENSFHEG00000018669)
Sheepshead minnow	MODERN SPECIES	127	ENSCVAG00000017468	TJP1 (ENSCVAG00000017377)	ENTREP2 (ENSCVAG00000016802)	GOLM2 (ENSCVAG00000016713)	CTDSPL2 (ENSCVAG00000016695)	ENSCVAG00000016648	eif3jb (ENSCVAG00000016639)	cilp (ENSCVAG00000016603)	IGDCC3 (ENSCVAG00000016563)	ano5b (ENSCVAG00000016529)	slc17a6b (ENSCVAG00000016500)	GAS2 (ENSCVAG00000016450)	ENSCVAG00000016440	slc39a13 (ENSCVAG00000016416) #20	spi1b (ENSCVAG00000016404) #21	mybpc3 (ENSCVAG00000016381) #22	lgr4 (ENSCVAG00000016253)	ENSCVAG00000016165	mettl15 (ENSCVAG00000016141)	ENSCVAG00000016133	bdnf (ENSCVAG00000016023)	lin7c (ENSCVAG00000016016)	lin7c (ENSCVAG00000015996)	rplp2l (ENSCVAG00000015941)	FTH1 (ENSCVAG00000015937)	mcee (ENSCVAG00000015918)	mphosph10 (ENSCVAG00000015908)	ist1 (ENSCVAG00000015900)	dhodh (ENSCVAG00000015885)	ENSCVAG00000015854	ENSCVAG00000015841
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000168098	ENSGT00500000044924	ENSGT00940000159903	ENSGT00940000163403	ENSGT00940000159615
Poecilia	ANCESTRAL SPECIES	4	ENSGT00550000074781	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000168098	ENSGT00500000044924	ENSGT00940000161671.r	ENSGT00940000162823.C.b	ENSGT01020000230389.a.b
NAME_6	DUPLICATION
NAME_6	ANCESTRAL SPECIES	5	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000163467.a.a.a.h.a	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a.d #21	ENSGT00940000157698.b.k #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000168098	ENSGT00500000044924	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	216			ENSPLAG00000013505	GOLM2 (ENSPLAG00000013526)	CTDSPL2 (ENSPLAG00000013577)	eif3jb (ENSPLAG00000013586)	cilp (ENSPLAG00000013601)	ENSPLAG00000013618	IGDCC3 (ENSPLAG00000013653)	ano5b (ENSPLAG00000013705)	slc17a6b (ENSPLAG00000013737)	GAS2 (ENSPLAG00000013834)	ENSPLAG00000013851	slc39a13 (ENSPLAG00000013858) #20	spi1b (ENSPLAG00000013876) #21	mybpc3 (ENSPLAG00000013924) #22	lgr4 (ENSPLAG00000013961)
Sailfin molly	MODERN SPECIES	138	PNPLA8 (ENSPLAG00000001659)	dnajb9a (ENSPLAG00000001668)	dnm1l (ENSPLAG00000001690)	tnnt2d (ENSPLAG00000001701)	CALD1 (ENSPLAG00000001710)	bpgm (ENSPLAG00000001718)	ENSPLAG00000001729	ENSPLAG00000001733	ENSPLAG00000001740	tnni4a (ENSPLAG00000001747)	ENSPLAG00000001751	zgc:136858 (ENSPLAG00000001763)	CNOT4 (ENSPLAG00000001780)	KCNA1 (ENSPLAG00000001790)	ENSPLAG00000001794	mybpc3 (ENSPLAG00000001818) #22	lgr4 (ENSPLAG00000001871)
Amazon molly	MODERN SPECIES	311															spi1b (ENSPFOG00000003818) #21	mybpc3 (ENSPFOG00000003832) #22	lgr4 (ENSPFOG00000004179)	mettl15 (ENSPFOG00000004425)	ENSPFOG00000004494	bdnf (ENSPFOG00000020731)	lin7c (ENSPFOG00000004688)	rplp2l (ENSPFOG00000004689)	FTH1 (ENSPFOG00000004723)	mcee (ENSPFOG00000004772)	mphosph10 (ENSPFOG00000004797)	ist1 (ENSPFOG00000004923)	ENSPFOG00000005021	dhodh (ENSPFOG00000022185)	ENSPFOG00000005174	ENSPFOG00000005078	sult5a1 (ENSPFOG00000005192)
NAME_6	ANCESTRAL SPECIES	634															ENSGT00940000159754.a.c #21	ENSGT00940000157698.b.l #22
Amazon molly	MODERN SPECIES	312	TJP1 (ENSPFOG00000003510)	ENTREP2 (ENSPFOG00000003384)	GOLM2 (ENSPFOG00000003313)	CTDSPL2 (ENSPFOG00000022672)	ENSPFOG00000003146	eif3jb (ENSPFOG00000003061)	cilp (ENSPFOG00000002951)	ENSPFOG00000020397	IGDCC3 (ENSPFOG00000002694)	ano5b (ENSPFOG00000002416)	slc17a6b (ENSPFOG00000002190)	GAS2 (ENSPFOG00000002126)	ENSPFOG00000002095	slc39a13 (ENSPFOG00000001985) #20	spi1b (ENSPFOG00000001948) #21	mybpc3 (ENSPFOG00000001637) #22	lgr4 (ENSPFOG00000001287)
Guppy	MODERN SPECIES	455	terb2 (ENSPREG00000022900)	TJP1 (ENSPREG00000022877)	ENTREP2 (ENSPREG00000022857)	GOLM2 (ENSPREG00000022848)	CTDSPL2 (ENSPREG00000022842)	eif3jb (ENSPREG00000022834)	cilp (ENSPREG00000022825)	ENSPREG00000022819	IGDCC3 (ENSPREG00000022816)	ano5b (ENSPREG00000022802)	slc17a6b (ENSPREG00000022789)	GAS2 (ENSPREG00000022785)	ENSPREG00000022779	slc39a13 (ENSPREG00000022752) #20	spi1b (ENSPREG00000022733) #21	mybpc3 (ENSPREG00000022702) #22	lgr4 (ENSPREG00000022687)	mettl15 (ENSPREG00000022683)	ENSPREG00000022673	bdnf (ENSPREG00000022671)	lin7c (ENSPREG00000022668)	rplp2l (ENSPREG00000022664)	FTH1 (ENSPREG00000022661)	mcee (ENSPREG00000022660)	mphosph10 (ENSPREG00000022655)	ist1 (ENSPREG00000022649)	dhodh (ENSPREG00000022646)	ENSPREG00000022640	ENSPREG00000022636	sult5a1 (ENSPREG00000022629)	dpep1 (ENSPREG00000022621)
Platyfish	MODERN SPECIES	18	TJP1 (ENSXMAG00000007304)	ENSXMAG00000025453	ENSXMAG00000007621	GOLM2 (ENSXMAG00000007605)	CTDSPL2 (ENSXMAG00000001164)	ENSXMAG00000022992	eif3jb (ENSXMAG00000001192)	cilp (ENSXMAG00000022017)	IGDCC3 (ENSXMAG00000001217)	ano5b (ENSXMAG00000001236)	slc17a6b (ENSXMAG00000001298)	ENSXMAG00000025796	GAS2 (ENSXMAG00000029612)	ENSXMAG00000022357	slc39a13 (ENSXMAG00000023572) #20	mybpc3 (ENSXMAG00000008225) #22	lgr4 (ENSXMAG00000003742)	ENSXMAG00000022614	mettl15 (ENSXMAG00000024824)	ENSXMAG00000003779	bdnf (ENSXMAG00000024748)	lin7c (ENSXMAG00000018280)	FTH1 (ENSXMAG00000018294)	mcee (ENSXMAG00000018295)	mphosph10 (ENSXMAG00000018298)	ist1 (ENSXMAG00000018307)	dhodh (ENSXMAG00000018327)	ENSXMAG00000026900	ENSXMAG00000024388	sult5a1 (ENSXMAG00000018343)	ENSXMAG00000025481
Aplocheiloidei	ANCESTRAL SPECIES	16	ENSGT00390000012336	ENSGT00940000175427	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00500000044924	ENSGT00940000163403	ENSGT00940000159615	ENSGT00940000162670	ENSGT00940000155966
Mangrove rivulus	MODERN SPECIES	5	sord (ENSKMAG00000003026)	ENSKMAG00000003015	TJP1 (ENSKMAG00000002763)	ENSKMAG00000002649	GOLM2 (ENSKMAG00000002617)	CTDSPL2 (ENSKMAG00000002569)	eif3jb (ENSKMAG00000002556)	cilp (ENSKMAG00000002527)	IGDCC3 (ENSKMAG00000002505)	ano5b (ENSKMAG00000002374)	slc17a6b (ENSKMAG00000002309)	GAS2 (ENSKMAG00000002295)	ENSKMAG00000002270	slc39a13 (ENSKMAG00000002255) #20	spi1b (ENSKMAG00000002213) #21	mybpc3 (ENSKMAG00000002007) #22	lgr4 (ENSKMAG00000001889)	mettl15 (ENSKMAG00000001863)	ENSKMAG00000001845	bdnf (ENSKMAG00000001807)	lin7c (ENSKMAG00000001773)	rplp2l (ENSKMAG00000001760)	FTH1 (ENSKMAG00000001739)	mcee (ENSKMAG00000001721)	mphosph10 (ENSKMAG00000001701)	ist1 (ENSKMAG00000001682)	dhodh (ENSKMAG00000001640)	ENSKMAG00000001620	ENSKMAG00000001596	sult5a1 (ENSKMAG00000001555)	dpep1 (ENSKMAG00000001511)
Oryzias	ANCESTRAL SPECIES	13	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00940000164472.a.a.b.b.a.a.b.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00500000044924	ENSGT00940000159903	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615
Oryzias_a	ANCESTRAL SPECIES	6	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00940000164472.a.a.b.b.a.a.b.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00500000044924	ENSGT00940000161671	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615
Japanese Medaka HdrR	MODERN SPECIES	17	ENSORLG00000023236	GOLM2 (ENSORLG00000006306)	CTDSPL2 (ENSORLG00000006288)	ENSORLG00000024609	ENSORLG00000022737	eif3jb (ENSORLG00000006244)	ENSORLG00000029282	cilp (ENSORLG00000006227)	ENSORLG00000024374	ano5b (ENSORLG00000006218)	slc17a6b (ENSORLG00000006157)	GAS2 (ENSORLG00000006119)	ENSORLG00000006107	slc39a13 (ENSORLG00000006101) #20	spi1b (ENSORLG00000006090) #21	mybpc3 (ENSORLG00000006071) #22	lgr4 (ENSORLG00000005968)	KIF18A (ENSORLG00000005936)	mettl15 (ENSORLG00000005945)	bdnf (ENSORLG00000028220)	lin7c (ENSORLG00000005892)	ENSORLG00000005872	mcee (ENSORLG00000022009)	ENSORLG00000028726	mphosph10 (ENSORLG00000005840)	ist1 (ENSORLG00000005825)	dhodh (ENSORLG00000005804)	ENSORLG00000005792	ENSORLG00000028170	sult5a1 (ENSORLG00000005774)	dpep1 (ENSORLG00000005754)
Chinese medaka	MODERN SPECIES	72	sord (ENSOSIG00000021714)	terb2 (ENSOSIG00000021703)	TJP1 (ENSOSIG00000019733)	ENTREP2 (ENSOSIG00000019638)	ENSOSIG00000019605	ENSOSIG00000019591	eif3jb (ENSOSIG00000019580)	cilp (ENSOSIG00000019572)	IGDCC3 (ENSOSIG00000019499)	ano5b (ENSOSIG00000018100)	slc17a6b (ENSOSIG00000016354)	GAS2 (ENSOSIG00000016312)	ENSOSIG00000016309	slc39a13 (ENSOSIG00000016303) #20	spi1b (ENSOSIG00000016299) #21	mybpc3 (ENSOSIG00000010848) #22	lgr4 (ENSOSIG00000010795)	mettl15 (ENSOSIG00000010790)	ENSOSIG00000010765	bdnf (ENSOSIG00000010763)	lin7c (ENSOSIG00000010762)	rplp2l (ENSOSIG00000010761)	ENSOSIG00000010759	mcee (ENSOSIG00000010758)	mphosph10 (ENSOSIG00000010150)	ist1 (ENSOSIG00000010130)	dhodh (ENSOSIG00000009691)	ENSOSIG00000009687	ENSOSIG00000009686	dpep1 (ENSOSIG00000009650)	SLC22A31 (ENSOSIG00000009643)
Oryzias_b	ANCESTRAL SPECIES	5	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00940000157742.a.h.a.a.b	ENSGT00940000164472.a.a.b.b.a.a.b.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969.sb	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00500000044924	ENSGT00940000159903	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615	ENSGT00940000162670.t
Indian medaka	MODERN SPECIES	26	TJP1 (ENSOMEG00000020099)	ENTREP2 (ENSOMEG00000000524)	GOLM2 (ENSOMEG00000019694)	ENSOMEG00000019648	ENSOMEG00000019558	ENSOMEG00000019447	eif3jb (ENSOMEG00000019427)	cilp (ENSOMEG00000019393)	IGDCC3 (ENSOMEG00000019375)	ano5b (ENSOMEG00000019300)	slc17a6b (ENSOMEG00000019200)	GAS2 (ENSOMEG00000019157)	ENSOMEG00000019115	slc39a13 (ENSOMEG00000019082) #20	spi1b (ENSOMEG00000018984) #21	mybpc3 (ENSOMEG00000018891) #22	lgr4 (ENSOMEG00000018858)	mettl15 (ENSOMEG00000000926)	ENSOMEG00000018755	bdnf (ENSOMEG00000018614)	lin7c (ENSOMEG00000018588)	FTH1 (ENSOMEG00000018537)	mcee (ENSOMEG00000018524)	mphosph10 (ENSOMEG00000018510)	ist1 (ENSOMEG00000018483)	dhodh (ENSOMEG00000018454)	ENSOMEG00000018429	ENSOMEG00000000473	sult5a1 (ENSOMEG00000018398)	dpep1 (ENSOMEG00000018387)	SLC22A31 (ENSOMEG00000018341)
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT00940000161671	ENSGT01020000230389.a.b	ENSGT00940000163403
Pomacentridae	ANCESTRAL SPECIES	15	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT00940000161671	ENSGT01020000230389.a.b	ENSGT00940000163403
Bicolor damselfish	MODERN SPECIES	978									IGDCC3 (ENSSPAG00000001513)	ano5b (ENSSPAG00000001561)	slc17a6b (ENSSPAG00000001690)	GAS2 (ENSSPAG00000001722)	ENSSPAG00000001771	slc39a13 (ENSSPAG00000001790) #20	spi1b (ENSSPAG00000001838) #21	mybpc3 (ENSSPAG00000001932) #22	lgr4 (ENSSPAG00000002900)
Pomacentridae_A	ANCESTRAL SPECIES	28	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT00940000161671	ENSGT01020000230389.a.b	ENSGT00940000163403
Spiny chromis	MODERN SPECIES	17									IGDCC3 (ENSAPOG00000002398)	ano5b (ENSAPOG00000002343)	slc17a6b (ENSAPOG00000002206)	GAS2 (ENSAPOG00000002176)	ENSAPOG00000002157	slc39a13 (ENSAPOG00000002147) #20	spi1b (ENSAPOG00000002132) #21	mybpc3 (ENSAPOG00000002104) #22	lgr4 (ENSAPOG00000002068)	mettl15 (ENSAPOG00000002039)	ENSAPOG00000002021	bdnf (ENSAPOG00000002008)	lin7c (ENSAPOG00000002004)	rplp2l (ENSAPOG00000001993)	FTH1 (ENSAPOG00000001980)	mcee (ENSAPOG00000001960)	mphosph10 (ENSAPOG00000001943)	ist1 (ENSAPOG00000001934)	dhodh (ENSAPOG00000001926)	ENSAPOG00000001903	ENSAPOG00000001898	sult5a1 (ENSAPOG00000000035)	dpep1 (ENSAPOG00000001873)
Amphiprion	ANCESTRAL SPECIES	37	ENSGT00550000074781	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT00940000161671	ENSGT00940000159903	ENSGT00940000163403
Orange clownfish	MODERN SPECIES		terb2 (ENSAPEG00000015557)	TJP1 (ENSAPEG00000015583)	ENTREP2 (ENSAPEG00000015713)	ENSAPEG00000015726	GOLM2 (ENSAPEG00000015734)	CTDSPL2 (ENSAPEG00000015753)	eif3jb (ENSAPEG00000015854)	cilp (ENSAPEG00000015877)	IGDCC3 (ENSAPEG00000015909)	ano5b (ENSAPEG00000015966)	slc17a6b (ENSAPEG00000016128)	GAS2 (ENSAPEG00000016205)	ENSAPEG00000016290	slc39a13 (ENSAPEG00000016350) #20	spi1b (ENSAPEG00000016392) #21	mybpc3 (ENSAPEG00000016544) #22	lgr4 (ENSAPEG00000018650)	mettl15 (ENSAPEG00000018675)	ENSAPEG00000018687	bdnf (ENSAPEG00000018804)	lin7c (ENSAPEG00000018818)	rplp2l (ENSAPEG00000018862)	ENSAPEG00000018874	mcee (ENSAPEG00000018891)	mphosph10 (ENSAPEG00000018904)	ist1 (ENSAPEG00000018915)	ENSAPEG00000018927	dhodh (ENSAPEG00000018948)	ENSAPEG00000018978	ENSAPEG00000018990	sult5a1 (ENSAPEG00000018997)
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	730											six3a (ENSAOCG00000024724)	six2a (ENSAOCG00000024722)	SRBD1 (ENSAOCG00000024718)	ENSAOCG00000024715	ENSAOCG00000024708	mybpc3 (ENSAOCG00000024685) #22	lgr4 (ENSAOCG00000024633)
Clown anemonefish	MODERN SPECIES	3561									IGDCC3 (ENSAOCG00000002964)	ano5b (ENSAOCG00000002951)	slc17a6b (ENSAOCG00000002922)	GAS2 (ENSAOCG00000002915)	ENSAOCG00000001987	slc39a13 (ENSAOCG00000002906) #20	spi1b (ENSAOCG00000002902) #21	ENSAOCG00000002900 #22
Cichlidae	ANCESTRAL SPECIES	11	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000178658	ENSGT00500000044924	ENSGT00940000161671	ENSGT01020000230389.a.b	ENSGT00940000163403
Midas cichlid	MODERN SPECIES	1673				ENSACIG00000006685	ENSACIG00000006676	SCN4A (ENSACIG00000006500)	eif3jb (ENSACIG00000006469)	cilp (ENSACIG00000006403)	IGDCC3 (ENSACIG00000006364)	ano5b (ENSACIG00000006269)	slc17a6b (ENSACIG00000005868)	GAS2 (ENSACIG00000005802)	ENSACIG00000005784	slc39a13 (ENSACIG00000005621) #20	spi1b (ENSACIG00000005594) #21	mybpc3 (ENSACIG00000005537) #22	lgr4 (ENSACIG00000005495)	mettl15 (ENSACIG00000005475)	ENSACIG00000005439	bdnf (ENSACIG00000005408)	lin7c (ENSACIG00000005398)	rplp2l (ENSACIG00000005391)	FTH1 (ENSACIG00000005374)	mcee (ENSACIG00000005364)	mphosph10 (ENSACIG00000005328)	ist1 (ENSACIG00000005190)	ENSACIG00000005173	dhodh (ENSACIG00000005156)	ENSACIG00000005146	ENSACIG00000005129	sult5a1 (ENSACIG00000005107)
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000168098	ENSGT00500000044924	ENSGT00940000161671	ENSGT01020000230389.a.b	ENSGT00940000163403
Nile tilapia	MODERN SPECIES		ENSONIG00000032083	TJP1 (ENSONIG00000006221)	ENTREP2 (ENSONIG00000006230)	casc4 (ENSONIG00000006240)	eif3jb (ENSONIG00000006245)	cilp (ENSONIG00000006251)	IGDCC3 (ENSONIG00000006253)	ENSONIG00000028678	THSD4 (ENSONIG00000036094)	ano5b (ENSONIG00000002915)	slc17a6b (ENSONIG00000002926)	GAS2 (ENSONIG00000032433)	ENSONIG00000033257	slc39a13 (ENSONIG00000002939) #20	spi1b (ENSONIG00000002940) #21	mybpc3 (ENSONIG00000002948) #22	lgr4 (ENSONIG00000002972)	mettl15 (ENSONIG00000028691)	ENSONIG00000043025	mettl15 (ENSONIG00000002979)	bdnf (ENSONIG00000020614)	lin7c (ENSONIG00000029118)	rplp2l (ENSONIG00000032714)	FTH1 (ENSONIG00000033676)	mcee (ENSONIG00000002996)	mphosph10 (ENSONIG00000002999)	ist1 (ENSONIG00000040532)	dhodh (ENSONIG00000003006)	ENSONIG00000039066	sult5a1 (ENSONIG00000003011)	dpep1 (ENSONIG00000003012)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	13	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000168098	ENSGT00500000044924	ENSGT00940000161671	ENSGT01020000230389.a.b	ENSGT00940000163403
Lyretail cichlid	MODERN SPECIES	290	TJP1 (ENSNBRG00000014070)	ENSNBRG00000014145	ENTREP2 (ENSNBRG00000014158)	GOLM2 (ENSNBRG00000014185)	CTDSPL2 (ENSNBRG00000014194)	ENSNBRG00000014221	eif3jb (ENSNBRG00000014228)	cilp (ENSNBRG00000014246)	IGDCC3 (ENSNBRG00000014283)	ano5b (ENSNBRG00000014394)	slc17a6b (ENSNBRG00000014443)	GAS2 (ENSNBRG00000014491)	ENSNBRG00000014554	slc39a13 (ENSNBRG00000014577) #20	spi1b (ENSNBRG00000014587) #21	mybpc3 (ENSNBRG00000014837) #22	lgr4 (ENSNBRG00000016188)	mettl15 (ENSNBRG00000016365)	ENSNBRG00000016395	ENSNBRG00000016539	bdnf (ENSNBRG00000016587)	lin7c (ENSNBRG00000016616)	rplp2l (ENSNBRG00000016643)	FTH1 (ENSNBRG00000016661)	mcee (ENSNBRG00000016683)	mphosph10 (ENSNBRG00000016697)	ist1 (ENSNBRG00000016754)	dhodh (ENSNBRG00000016777)	ENSNBRG00000016791	ENSNBRG00000016811	sult5a1 (ENSNBRG00000016836)
Haplochromini	ANCESTRAL SPECIES	11	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT01050000245471	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000168098	ENSGT00500000044924	ENSGT00940000161671	ENSGT01020000230389.a.b	ENSGT00940000163403
Burton s mouthbrooder	MODERN SPECIES	399	TJP1 (ENSHBUG00000014073)	ENTREP2 (ENSHBUG00000014170)	GOLM2 (ENSHBUG00000014247)	CTDSPL2 (ENSHBUG00000014295)	ENSHBUG00000014417	eif3jb (ENSHBUG00000014433)	cilp (ENSHBUG00000014469)	IGDCC3 (ENSHBUG00000001111)	ano5b (ENSHBUG00000014655)	slc17a6b (ENSHBUG00000014698)	ENSHBUG00000014704	GAS2 (ENSHBUG00000014715)	ENSHBUG00000014720	slc39a13 (ENSHBUG00000014733) #20	spi1b (ENSHBUG00000014739) #21	mybpc3 (ENSHBUG00000000435) #22	lgr4 (ENSHBUG00000014880)	mettl15 (ENSHBUG00000000745)
Haplochromini_A	ANCESTRAL SPECIES	10	ENSGT00940000180407	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00940000168098	ENSGT00500000044924	ENSGT00940000161671	ENSGT01020000230389.a.b	ENSGT00940000163403
Haplochromini_B	ANCESTRAL SPECIES	3	ENSGT00940000180407	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.d.a	ENSGT00950000182957.a.a.b	ENSGT00390000018400.c	ENSGT00390000008152.B.b	ENSGT00940000156969	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00940000153941.b	ENSGT00390000011359	ENSGT00390000007453	ENSGT00500000044924	ENSGT00940000161671	ENSGT01020000230389.a.b	ENSGT00940000163403	ENSGT00940000159615
Zebra mbuna	MODERN SPECIES	1091	ENSMZEG00005001986	dhodh (ENSMZEG00005001968)	ENTREP2 (ENSMZEG00005001915)	GOLM2 (ENSMZEG00005001863)	CTDSPL2 (ENSMZEG00005001788)	ENSMZEG00005001705	eif3jb (ENSMZEG00005001694)	cilp (ENSMZEG00005001654)	IGDCC3 (ENSMZEG00005001647)	ano5b (ENSMZEG00005001554)	slc17a6b (ENSMZEG00005001532)	GAS2 (ENSMZEG00005001452)	ENSMZEG00005001428	slc39a13 (ENSMZEG00005001421) #20	spi1b (ENSMZEG00005001412) #21	mybpc3 (ENSMZEG00005001375) #22	lgr4 (ENSMZEG00005001332)	TJP1 (ENSMZEG00005001211)	terb2 (ENSMZEG00005001173)	sord (ENSMZEG00005001154)	APBA2 (ENSMZEG00005001085)	saa (ENSMZEG00005001053)	syt7b (ENSMZEG00005001011)	sdhaf2 (ENSMZEG00005000974)	polr2l (ENSMZEG00005000960)	CPSF7 (ENSMZEG00005000950)	DAGLA (ENSMZEG00005000821)	ext2 (ENSMZEG00005000775)	ALX4 (ENSMZEG00005000742)	caprin1a (ENSMZEG00005000729)	nucb2a (ENSMZEG00005000690)
Eastern happy	MODERN SPECIES		TJP1 (ENSACLG00000026499)	ENTREP2 (ENSACLG00000026456)	GOLM2 (ENSACLG00000026413)	CTDSPL2 (ENSACLG00000026355)	ENSACLG00000026300	eif3jb (ENSACLG00000026284)	cilp (ENSACLG00000026246)	ENSACLG00000026241	IGDCC3 (ENSACLG00000026201)	ano5b (ENSACLG00000026101)	slc17a6b (ENSACLG00000025921)	GAS2 (ENSACLG00000025843)	ENSACLG00000025836	slc39a13 (ENSACLG00000025826) #20	spi1b (ENSACLG00000025796) #21	mybpc3 (ENSACLG00000025769) #22	lgr4 (ENSACLG00000025670)	ENSACLG00000025665	ENSACLG00000025660	mettl15 (ENSACLG00000025643)	ENSACLG00000025530	bdnf (ENSACLG00000025526)	lin7c (ENSACLG00000025508)	rplp2l (ENSACLG00000025491)	FTH1 (ENSACLG00000025477)	mcee (ENSACLG00000025469)	ENSACLG00000025466	mphosph10 (ENSACLG00000025421)	ist1 (ENSACLG00000025412)	dhodh (ENSACLG00000025370)	ENSACLG00000025365
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	306	terb2 (ENSPNYG00000007090)	TJP1 (ENSPNYG00000006991)	ENTREP2 (ENSPNYG00000006945)	GOLM2 (ENSPNYG00000006905)	CTDSPL2 (ENSPNYG00000006860)	ENSPNYG00000006842	eif3jb (ENSPNYG00000006813)	cilp (ENSPNYG00000006779)	IGDCC3 (ENSPNYG00000006719)	ano5b (ENSPNYG00000006667)	slc17a6b (ENSPNYG00000006338)	GAS2 (ENSPNYG00000006157)	ENSPNYG00000006088	slc39a13 (ENSPNYG00000006065) #20	spi1b (ENSPNYG00000006043) #21	ENSPNYG00000006023 #22	ENSPNYG00000005813 #22	ENSPNYG00000005701	lgr4 (ENSPNYG00000005622)	ENSPNYG00000005591	mettl15 (ENSPNYG00000005553)	ENSPNYG00000005446	bdnf (ENSPNYG00000005390)	lin7c (ENSPNYG00000005365)	rplp2l (ENSPNYG00000005355)	ENSPNYG00000005327	mcee (ENSPNYG00000005314)	mphosph10 (ENSPNYG00000005297)	ist1 (ENSPNYG00000005281)	ENSPNYG00000005267	dhodh (ENSPNYG00000005213)
P. nyererei	MODERN SPECIES	306	TJP1 (ENSPNYG00000006991)	ENTREP2 (ENSPNYG00000006945)	GOLM2 (ENSPNYG00000006905)	CTDSPL2 (ENSPNYG00000006860)	ENSPNYG00000006842	eif3jb (ENSPNYG00000006813)	cilp (ENSPNYG00000006779)	IGDCC3 (ENSPNYG00000006719)	ano5b (ENSPNYG00000006667)	slc17a6b (ENSPNYG00000006338)	GAS2 (ENSPNYG00000006157)	ENSPNYG00000006088	slc39a13 (ENSPNYG00000006065) #20	spi1b (ENSPNYG00000006043) #21	ENSPNYG00000006023 #22	ENSPNYG00000005813 #22	ENSPNYG00000005701	lgr4 (ENSPNYG00000005622)	ENSPNYG00000005591	mettl15 (ENSPNYG00000005553)	ENSPNYG00000005446	bdnf (ENSPNYG00000005390)	lin7c (ENSPNYG00000005365)	rplp2l (ENSPNYG00000005355)	ENSPNYG00000005327	mcee (ENSPNYG00000005314)	mphosph10 (ENSPNYG00000005297)	ist1 (ENSPNYG00000005281)	ENSPNYG00000005267	dhodh (ENSPNYG00000005213)	ENSPNYG00000005189
Tiger tail seahorse	MODERN SPECIES	136	ENSHCOG00000008589	TJP1 (ENSHCOG00000008571)	ENTREP2 (ENSHCOG00000008418)	GOLM2 (ENSHCOG00000008394)	ENSHCOG00000008370	eif3jb (ENSHCOG00000008338)	cilp (ENSHCOG00000008324)	ENSHCOG00000008305	IGDCC3 (ENSHCOG00000008294)	ano5b (ENSHCOG00000008275)	slc17a6b (ENSHCOG00000008250)	GAS2 (ENSHCOG00000008224)	ENSHCOG00000008203	slc39a13 (ENSHCOG00000008166) #20	spi1b (ENSHCOG00000008154) #21	mybpc3 (ENSHCOG00000008151) #22	lgr4 (ENSHCOG00000008088)	mettl15 (ENSHCOG00000008070)	ENSHCOG00000008048	bdnf (ENSHCOG00000008034)	lin7c (ENSHCOG00000008026)	rplp2l (ENSHCOG00000007988)	ENSHCOG00000007981	FTH1 (ENSHCOG00000007973)	mcee (ENSHCOG00000007970)	mphosph10 (ENSHCOG00000007964)	ist1 (ENSHCOG00000007934)	ENSHCOG00000007911	c1qtnf4 (ENSHCOG00000007905)	ENSHCOG00000007893	ENSHCOG00000007856
Pinecone sodierfish	MODERN SPECIES	17	TJP1 (ENSMMDG00005007019)	ENTREP2 (ENSMMDG00005008347)	ENSMMDG00005008350	GOLM2 (ENSMMDG00005008354)	CTDSPL2 (ENSMMDG00005008359)	ENSMMDG00005008385	eif3jb (ENSMMDG00005008400)	cilp (ENSMMDG00005008407)	IGDCC3 (ENSMMDG00005008413)	ano5b (ENSMMDG00005008428)	slc17a6b (ENSMMDG00005008568)	GAS2 (ENSMMDG00005008606)	ENSMMDG00005008609	slc39a13 (ENSMMDG00005008611) #20	spi1b (ENSMMDG00005008615) #21	mybpc3 (ENSMMDG00005008617) #22	lgr4 (ENSMMDG00005008622)	mettl15 (ENSMMDG00005008624)	ENSMMDG00005008628	lin7c (ENSMMDG00005008641)	rplp2l (ENSMMDG00005008650)	ENSMMDG00005008657	lysmd2 (ENSMMDG00005008674)	scg3 (ENSMMDG00005008682)	tnfaip8l3 (ENSMMDG00005008693)	cyp19a1a (ENSMMDG00005008708)	gldn (ENSMMDG00005009413)	dmxl2 (ENSMMDG00005009418)	sema6dl (ENSMMDG00005009426)	ENSMMDG00005009431	slc24a5 (ENSMMDG00005009433)
Cod	MODERN SPECIES	5	ENSGMOG00000008481	sema6dl (ENSGMOG00000008463)	dmxl2 (ENSGMOG00000017456)	gldn (ENSGMOG00000017424)	cyp19a1a (ENSGMOG00000017406)	tnfaip8l3 (ENSGMOG00000036180)	ENSGMOG00000036380	ENSGMOG00000004397	ENSGMOG00000022640	ano5b (ENSGMOG00000018841)	slc17a6b (ENSGMOG00000018827)	GAS2 (ENSGMOG00000018809)	ENSGMOG00000018795	slc39a13 (ENSGMOG00000018783) #20	spi1b (ENSGMOG00000022260) #21	MYBPC3 (ENSGMOG00000018744) #22	lgr4 (ENSGMOG00000018727)	mettl15 (ENSGMOG00000034800)	ENSGMOG00000018684	bdnf (ENSGMOG00000018674)	lin7c (ENSGMOG00000027091)	ENSGMOG00000018660	fth1a (ENSGMOG00000018654)	syt7b (ENSGMOG00000004112)	sdhaf2 (ENSGMOG00000004126)	CPSF7 (ENSGMOG00000023837)	PDE3B (ENSGMOG00000009081)	ENSGMOG00000009073	CALCB (ENSGMOG00000022359)	ENSGMOG00000037057	sox6 (ENSGMOG00000009040)
Protacanthopterygii	ANCESTRAL SPECIES	2	ENSGT00940000156076.a.a.a.a.e	ENSGT00940000163235.A.a.b	ENSGT00940000156076.a.a.a.a.f	ENSGT01040000240607	ENSGT00940000156912.c.a	ENSGT00940000158805.a	ENSGT00940000159515.c.b	ENSGT00940000158300.f	ENSGT00390000011846	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a #21	ENSGT00940000157698.b #22	ENSGT00940000157925	ENSGT00390000014756	ENSGT00940000159058	ENSGT00390000007725.B.d	ENSGT00940000153222.a.b.b.b.a	ENSGT00550000074828.a	ENSGT00950000182841.b.a.b.a.a	ENSGT00390000001149	ENSGT00730000110905.a	ENSGT00390000007087	ENSGT00940000161192.c	ENSGT00940000156620	ENSGT00940000159662.c.a	ENSGT00940000153438.a.t	ENSGT00390000001927.a.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	70	ENSGT00940000156076.a.a.a.a.e	ENSGT00940000162219.a	ENSGT00940000163235.A.a.a.b.d	ENSGT00940000156076.a.a.a.a.f.a	ENSGT01040000240607.a	ENSGT00950000182838.A.a.b.n	ENSGT00950000182885.A.a.f.e.b	ENSGT00940000158300.f.f	ENSGT00390000011846.a.a	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a.f #21	ENSGT00940000157698.b.q #22	ENSGT00940000157925.m	ENSGT00390000014756.e.a	ENSGT00940000159754.a.e #21	ENSGT00940000157698.b.r #22	ENSGT00940000157925.n	ENSGT00390000014756.e.b.b	ENSGT00940000159058.c	ENSGT00390000007725.B.d.f	ENSGT00940000153222.a.b.b.b.a.h.a	ENSGT00550000074828.a.p	ENSGT00940000165631.p.b.b.a	ENSGT00940000157180.b.c.a	ENSGT00390000001149.q	ENSGT00730000110905.a.u	ENSGT00390000007087.gc
Huchen	MODERN SPECIES	959		ENSHHUG00000022563	AP2A2 (ENSHHUG00000022585)	tph1a (ENSHHUG00000022620)	kcnc1a (ENSHHUG00000023331)	cd81a (ENSHHUG00000023351)	PKP3 (ENSHHUG00000023385)	ANO9 (ENSHHUG00000023417)	tssc4 (ENSHHUG00000023437)	ano5b (ENSHHUG00000023444)	slc17a6b (ENSHHUG00000023789)	GAS2 (ENSHHUG00000023882)	ENSHHUG00000023888	slc39a13 (ENSHHUG00000023892) #20	spi1b (ENSHHUG00000023906) #21	mybpc3 (ENSHHUG00000023916) #22	ENSHHUG00000024716	lgr4 (ENSHHUG00000024729)
Salmoninae_a	ANCESTRAL SPECIES	72	ENSGT00940000154910.b.b.r.b	ENSGT00950000182838.A.a.b.n	ENSGT00950000182885.A.a.f.e.b	ENSGT00940000156912.c.a.a	ENSGT00940000158805.a.i	ENSGT00940000159515.c.b.d	ENSGT00940000158300.f.f	ENSGT00390000011846.a.a	ENSGT00990000209012	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b.h	ENSGT00390000015299.a.a.a.j	ENSGT00940000157349.kb.b #20	ENSGT00940000159754.a.f.a #21	ENSGT00940000157698.b.q #22	ENSGT00940000157925.n	ENSGT00390000014756.e.b.b	ENSGT00940000159058.c	ENSGT00390000007725.B.d.f	ENSGT00940000153222.a.b.b.b.a.h.a	ENSGT00550000074828.a.p	ENSGT00940000165631.p.b.b.a	ENSGT01060000248781	ENSGT00940000157180.b.d	ENSGT00390000001149.r	ENSGT00730000110905.a.v
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00390000013104.e	ENSGT00940000162219.b	ENSGT00950000182838.A.a.b.m	ENSGT00950000182885.A.a.f.e.a	ENSGT00940000156912.c.a.b.a	ENSGT00940000158805.a.j	ENSGT00940000159515.c.b.c	ENSGT00940000158300.f.e	ENSGT00990000209012.d	ENSGT00940000155692.j.m	ENSGT00940000155891.c.b.f	ENSGT00940000155755.a.b.h	ENSGT00390000015299.a.a.a.j	ENSGT00940000157349.kb.b #20	ENSGT00940000159754.a.f.a #21	ENSGT00940000157698.b.q #22	ENSGT00940000157925.n.a	ENSGT00390000014756.e.b.b	ENSGT00940000159058.c	ENSGT00390000007725.B.d.f	ENSGT00940000153222.a.b.b.b.a.h.a	ENSGT00550000074828.a.p	ENSGT00950000182841.b.a.b.a.a.d	ENSGT00390000004737.b.a.n	ENSGT00940000165631.p.b.b.a	ENSGT00940000157180.b.c.a.b	ENSGT00940000165631.p.b.a.b.b	ENSGT00940000157180.b.c.b	ENSGT00390000001149.r	ENSGT00730000110905.a.v	ENSGT00390000007087.fc
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00390000013104.e	ENSGT00940000156076.a.a.a.a.e.d	ENSGT00950000182838.A.a.b.m	ENSGT00950000182885.A.a.f.e.a	ENSGT00940000156912.c.a.b.a	ENSGT00940000158805.a.j	ENSGT00940000159515.c.b.c	ENSGT00940000158300.f.e	ENSGT00990000209012.d	ENSGT00940000155692.j.m	ENSGT00940000155891.c.b.f	ENSGT00940000155755.a.b.h	ENSGT00390000015299.a.a.a.j.a	ENSGT00940000157349.kb.b #20	ENSGT00940000159754.a.f.a #21	ENSGT00940000157698.b.q #22	ENSGT00940000157925.n.a	ENSGT00390000014756.e.b.b	ENSGT00940000159058.c	ENSGT00390000007725.B.d.f	ENSGT00940000153222.a.b.b.b.a.h.a	ENSGT00550000074828.a.p	ENSGT00950000182841.b.a.b.a.a.d	ENSGT00390000004737.b.a.n	ENSGT00940000165631.p.b.b.a	ENSGT00940000157180.b.c.a.b	ENSGT00940000165631.p.b.a.b.b	ENSGT00940000157180.b.c.b	ENSGT00390000001149.r	ENSGT00730000110905.a.v	ENSGT00390000007087.fc
Coho salmon	MODERN SPECIES	22	ENSOKIG00005026476	ENSOKIG00005026898	AP2A2 (ENSOKIG00005026928)	TPH1 (ENSOKIG00005027297)	kcnc1a (ENSOKIG00005028628)	cd81a (ENSOKIG00005028691)	PKP3 (ENSOKIG00005028711)	ENSOKIG00005028766	ENSOKIG00005028851	ano5b (ENSOKIG00005028918)	slc17a6b (ENSOKIG00005029928)	GAS2 (ENSOKIG00005030329)	ENSOKIG00005030345	slc39a13 (ENSOKIG00005030368) #20	spi1b (ENSOKIG00005003740) #21	mybpc3 (ENSOKIG00005004064) #22	lgr4 (ENSOKIG00005012278)	mettl15 (ENSOKIG00005012305)	ENSOKIG00005012330	bdnf (ENSOKIG00005012390)	lin7c (ENSOKIG00005012406)	rplp2l (ENSOKIG00005012474)	ENSOKIG00005012490	ENSOKIG00005012529	ENSOKIG00005012580	syt7b (ENSOKIG00005012693)	ENSOKIG00005012748	sdhaf2 (ENSOKIG00005012751)	CPSF7 (ENSOKIG00005012760)	polr2l (ENSOKIG00005012770)	DAGLA (ENSOKIG00005012792)
Chinook salmon	MODERN SPECIES	28	TPH1 (ENSOTSG00005004128)	kcnc1a (ENSOTSG00005006512)	ENSOTSG00005006513	ENSOTSG00005006514	kcnc1a (ENSOTSG00005006515)	cd81a (ENSOTSG00005006516)	PKP3 (ENSOTSG00005006518)	ANO9 (ENSOTSG00005006520)	ENSOTSG00005006527	ano5b (ENSOTSG00005006546)	slc17a6b (ENSOTSG00005007994)	GAS2 (ENSOTSG00005008159)	ENSOTSG00005008160	slc39a13 (ENSOTSG00005008161) #20	spi1b (ENSOTSG00005008162) #21	mybpc3 (ENSOTSG00005008163) #22	lgr4 (ENSOTSG00005008165)	mettl15 (ENSOTSG00005008166)	ENSOTSG00005008169	bdnf (ENSOTSG00005008179)	lin7c (ENSOTSG00005008180)	rplp2l (ENSOTSG00005008227)	ENSOTSG00005008230	saa (ENSOTSG00005008232)	ENSOTSG00005008235	ENSOTSG00005008237	TMEM266 (ENSOTSG00005008240)	ETFA (ENSOTSG00005008245)	ISL2 (ENSOTSG00005008260)	rras2 (ENSOTSG00005008261)	TUB (ENSOTSG00005008266)
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000016138	AP2A2 (ENSOMYG00000016458)	ENSOMYG00000016798	kcnc1a (ENSOMYG00000019361)	cd81a (ENSOMYG00000019389)	ENSOMYG00000019428	ENSOMYG00000019507	ENSOMYG00000019543	ano5b (ENSOMYG00000019690)	slc17a6b (ENSOMYG00000020529)	GAS2 (ENSOMYG00000022303)	ENSOMYG00000022316	slc39a13 (ENSOMYG00000022349) #20	ENSOMYG00000051446	spi1b (ENSOMYG00000022378) #21	MYBPC3 (ENSOMYG00000022744) #22	lgr4 (ENSOMYG00000024097)	mettl15 (ENSOMYG00000024227)	ENSOMYG00000024307	bdnf (ENSOMYG00000024357)	lin7c (ENSOMYG00000024383)	ENSOMYG00000065649	ENSOMYG00000024408	frih (ENSOMYG00000024442)	saa (ENSOMYG00000061342)	ENSOMYG00000024502	saa (ENSOMYG00000037490)	ENSOMYG00000065082	syt7b (ENSOMYG00000024699)	sdhaf2 (ENSOMYG00000025161)	ENSOMYG00000025206
Salmo	ANCESTRAL SPECIES	30	ENSGT00940000163235.A.a.a.b.d	ENSGT00940000156076.a.a.a.a.f.a.a	ENSGT00950000182838.A.a.b.m	ENSGT00950000182885.A.a.f.e.a	ENSGT00940000156912.c.a.b	ENSGT00940000158805.a.j.a	ENSGT00940000159515.c.b.c	ENSGT00940000158300.f.e	ENSGT00390000011846.a.b	ENSGT00940000155692.j.k	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b.h	ENSGT00390000015299.a.a.a.j	ENSGT00940000157349.kb.b #20	ENSGT00940000159754.a.f.a #21	ENSGT00940000157698.b.q #22	ENSGT00940000157925.n	ENSGT00390000014756.e.b.a.a.a	ENSGT00940000159058.c	ENSGT00390000007725.B.d.f	ENSGT00940000153222.a.b.b.b.a.h.a	ENSGT00550000074828.a.p	ENSGT00950000182841.b.a.b.a.a.a	ENSGT00390000004737.b.a.m.c	ENSGT00940000165631.p.b.a.a	ENSGT00940000157180.b.c.b	ENSGT00390000001149.r	ENSGT00730000110905.a.v	ENSGT00390000007087.fc	ENSGT00940000161192.c.a	ENSGT00940000156620.c
Atlantic salmon	MODERN SPECIES	18	ENSSSAG00000056775	ENSSSAG00000022087	ENSSSAG00000040384	ENSSSAG00000056947	ENSSSAG00000093916	kcnc1a (ENSSSAG00000060308)	cd81a (ENSSSAG00000060487)	ENSSSAG00000060561	ENSSSAG00000061274	tssc4 (ENSSSAG00000094946)	ano5b (ENSSSAG00000061688)	ENSSSAG00000064462	ENSSSAG00000064466	slc39a13 (ENSSSAG00000113991) #20	spi1b (ENSSSAG00000064470) #21	MYBPC3 (ENSSSAG00000120555) #22	lgr4 (ENSSSAG00000066848)	mettl15 (ENSSSAG00000010741)	ENSSSAG00000066873	bdnf (ENSSSAG00000049896)	LIN7C (ENSSSAG00000049914)	ENSSSAG00000049940	ENSSSAG00000049977	saa (ENSSSAG00000100178)	saa5 (ENSSSAG00000069990)	ENSSSAG00000056168	syt7b (ENSSSAG00000056045)	sdhaf2 (ENSSSAG00000056131)	cpsf7 (ENSSSAG00000056129)	ENSSSAG00000091113	ext2 (ENSSSAG00000054855)
River trout	MODERN SPECIES	21	ENSSTUG00000011428	ENSSTUG00000011407	AP2A2 (ENSSTUG00000011126)	tph1a (ENSSTUG00000010850)	kcnc1a (ENSSTUG00000010797)	cd81a (ENSSTUG00000010784)	PKP3 (ENSSTUG00000010701)	ANO9 (ENSSTUG00000010484)	ENSSTUG00000010468	ano5b (ENSSTUG00000009739)	slc17a6b (ENSSTUG00000009068)	GAS2 (ENSSTUG00000009040)	ENSSTUG00000009032	slc39a13 (ENSSTUG00000009009) #20	spi1b (ENSSTUG00000008983) #21	mybpc3 (ENSSTUG00000004080) #22	lgr4 (ENSSTUG00000003578)	mettl15 (ENSSTUG00000025797)	ENSSTUG00000025639	bdnf (ENSSTUG00000025614)	lin7c (ENSSTUG00000025573)	rplp2l (ENSSTUG00000025560)	FTH1 (ENSSTUG00000025517)	saa (ENSSTUG00000025493)	ENSSTUG00000025438	syt7b (ENSSTUG00000025268)	sdhaf2 (ENSSTUG00000025244)	ENSSTUG00000025231	polr2l (ENSSTUG00000025223)	DAGLA (ENSSTUG00000024913)	ext2 (ENSSTUG00000024763)
Salmoninae	ANCESTRAL SPECIES	70	ENSGT01040000240607.a	ENSGT00950000182838.A.a.b.n	ENSGT00950000182885.A.a.f.e.b	ENSGT00940000158300.f.f	ENSGT00390000011846.a.a	ENSGT00940000155692.j	ENSGT00940000155891.c.b	ENSGT00940000155755.a.b	ENSGT00390000015299.a.a.a	ENSGT00940000157349 #20	ENSGT00940000159754.a.f #21	ENSGT00940000157698.b.q #22	ENSGT00940000157925.m	ENSGT00390000014756.e.a	ENSGT00940000159754.a.e #21	ENSGT00940000157698.b.r #22	ENSGT00940000157925.n	ENSGT00390000014756.e.b.b	ENSGT00940000159058.c	ENSGT00390000007725.B.d.f	ENSGT00940000153222.a.b.b.b.a.h.a	ENSGT00550000074828.a.p	ENSGT00940000165631.p.b.b.a	ENSGT00940000157180.b.c.a	ENSGT00390000001149.q	ENSGT00730000110905.a.u	ENSGT00390000007087.gc	ENSGT00390000007087.fc	ENSGT00940000161192.c	ENSGT00940000156620	ENSGT00940000159662.c.a.d
Huchen	MODERN SPECIES	611	ENSHHUG00000030205	ENSHHUG00000030197	AP2A2 (ENSHHUG00000030176)	tph1a (ENSHHUG00000029718)	kcnc1a (ENSHHUG00000029683)	cd81a (ENSHHUG00000029605)	PKP3 (ENSHHUG00000029561)	ANO9 (ENSHHUG00000029543)	tssc4 (ENSHHUG00000029534)	ano5b (ENSHHUG00000029410)	slc17a6b (ENSHHUG00000029317)	GAS2 (ENSHHUG00000029311)	ENSHHUG00000029310	slc39a13 (ENSHHUG00000029307) #20	spi1b (ENSHHUG00000029296) #21	mybpc3 (ENSHHUG00000026280) #22	lgr4 (ENSHHUG00000026188)
Salmoninae_a	ANCESTRAL SPECIES	110												ENSGT00940000155755.a.b.g	ENSGT00390000015299.a.a.a.i	ENSGT00940000157349.kb.a #20	ENSGT00940000159754.a.f.b #21	ENSGT00940000157698.b.r #22	ENSGT00940000157925.m	ENSGT00390000014756.e.a	ENSGT00940000159058.d	ENSGT00390000007725.B.d.e.a.a	ENSGT00940000153222.a.b.b.b.a.h.b	ENSGT00550000074828.a.o	ENSGT00950000182841.b.a.b.a.a	ENSGT00390000004737.b.a.m	ENSGT00940000165631.p.b.a.b.a	ENSGT00940000157180.b.c.a	ENSGT00390000001149.q	ENSGT00730000110905.a.u	ENSGT00390000007087.gc	ENSGT00390000007087.fc	ENSGT00940000161192.c
Salmo	ANCESTRAL SPECIES	27	ENSGT00940000154910.b.b.r.b	ENSGT00940000163235.A.a.b	ENSGT00940000156076.a.a.a.a.e.a	ENSGT00950000182838.A.a.b.n	ENSGT00950000182885.A.a.f.e.b	ENSGT00940000156912.c.a.a	ENSGT00940000158805.a.j.b	ENSGT00940000159515.c.b.d	ENSGT00940000158300.f.f	ENSGT00390000011846.a.a	ENSGT00940000155692.j.l	ENSGT00940000155755.a.b.g	ENSGT00390000015299.a.a.a.i	ENSGT00940000157349.kb.a #20	ENSGT00940000159754.a.e #21	ENSGT00940000157698.b.r #22	ENSGT00940000157925.m	ENSGT00390000014756.e.a	ENSGT00940000159058.d	ENSGT00390000007725.B.d.e.a.a	ENSGT00940000153222.a.b.b.b.a.h.b	ENSGT00550000074828.a.o	ENSGT00950000182841.b.a.b.a.a.b	ENSGT00390000004737.b.a.m.d	ENSGT00940000165631.p.b.a.b.a	ENSGT00940000157180.b.c.a	ENSGT00390000001149.q	ENSGT00730000110905.a.u	ENSGT00390000007087.gc	ENSGT00940000161192.c.b	ENSGT00940000156620.d
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000083206	ENSSSAG00000043756	ENSSSAG00000110748	kcnc1a (ENSSSAG00000093724)	CD81 (ENSSSAG00000005195)	ENSSSAG00000090577	pkp3 (ENSSSAG00000005238)	ENSSSAG00000005332	tssc4 (ENSSSAG00000005356)	ano5b (ENSSSAG00000005417)	slc17a6b (ENSSSAG00000121222)	GAS2 (ENSSSAG00000007553)	ENSSSAG00000093285	slc39a13 (ENSSSAG00000007564) #20	spi1b (ENSSSAG00000007573) #21	MYBPC3 (ENSSSAG00000099433) #22	lgr4 (ENSSSAG00000101379)	mettl15 (ENSSSAG00000091214)	ENSSSAG00000010791	bdnf (ENSSSAG00000102604)	lin7c (ENSSSAG00000097261)	RLA2 (ENSSSAG00000013807)	ENSSSAG00000109945	ENSSSAG00000014172	syt7b (ENSSSAG00000056137)	sdhaf2 (ENSSSAG00000056034)	CPSF7 (ENSSSAG00000056029)	polr2l (ENSSSAG00000056026)	ENSSSAG00000054937	ext2 (ENSSSAG00000054896)	ENSSSAG00000054892
River trout	MODERN SPECIES	3	ENSSTUG00000023249	ENSSTUG00000023262	ENSSTUG00000023335	AP2A2 (ENSSTUG00000023353)	tph1a (ENSSTUG00000023632)	kcnc1a (ENSSTUG00000025764)	cd81a (ENSSTUG00000025798)	PKP3 (ENSSTUG00000025807)	ANO9 (ENSSTUG00000025861)	ENSSTUG00000025940	ano5b (ENSSTUG00000025977)	ENSSTUG00000026613	ENSSTUG00000027047	slc39a13 (ENSSTUG00000027054) #20	spi1b (ENSSTUG00000027063) #21	mybpc3 (ENSSTUG00000027127) #22	ENSSTUG00000029978	ENSSTUG00000029983	ENSSTUG00000029991	lgr4 (ENSSTUG00000030006)	ENSSTUG00000030067	mettl15 (ENSSTUG00000030077)	ENSSTUG00000030103	bdnf (ENSSTUG00000030155)	lin7c (ENSSTUG00000030171)	rplp2l (ENSSTUG00000030192)	ENSSTUG00000030204	saa (ENSSTUG00000030231)	ENSSTUG00000030236	syt7b (ENSSTUG00000030260)	sdhaf2 (ENSSTUG00000030298)
Oncorhynchus	ANCESTRAL SPECIES	32	ENSGT00940000163235.A.a.a.b.c.a	ENSGT00940000156076.a.a.a.a.e.c.a	ENSGT00950000182838.A.a.b.n	ENSGT00950000182885.A.a.f.e.b	ENSGT00940000156912.c.a.b.b	ENSGT00940000158805.a.i	ENSGT00940000159515.c.b.d	ENSGT00940000158300.f.f	ENSGT00390000011846.b	ENSGT00940000155692.j.n	ENSGT00940000155891.c.b.e	ENSGT00940000155755.a.b.g	ENSGT00390000015299.a.a.a.i	ENSGT00940000157349.kb.a #20	ENSGT00940000159754.a.f.b #21	ENSGT00940000157698.b.r #22	ENSGT00940000157925.n.b	ENSGT00390000014756.e.b.a.b	ENSGT00940000159058.d	ENSGT00390000007725.B.d.e.b	ENSGT00940000153222.a.b.b.b.a.h.b	ENSGT00940000153222.a.b.b.b.a.g	ENSGT00550000074828.a.o	ENSGT00950000182841.b.a.b.a.a.c	ENSGT00390000004737.b.a.m	ENSGT00940000165631.p.b.a.b.a	ENSGT00940000157180.b.d	ENSGT00940000157180.b.c.a.a	ENSGT00390000001149.q	ENSGT00730000110905.a.u	ENSGT00390000007087.gc
Rainbow trout	MODERN SPECIES	18	ENSOMYG00000042534	kcnc1a (ENSOMYG00000043474)	cd81a (ENSOMYG00000043505)	ENSOMYG00000043510	ENSOMYG00000056987	ENSOMYG00000043527	ENSOMYG00000043577	ano5b (ENSOMYG00000043612)	slc17a6b (ENSOMYG00000043695)	ENSOMYG00000062906	GAS2 (ENSOMYG00000043839)	ENSOMYG00000043844	slc39a13 (ENSOMYG00000043858) #20	ENSOMYG00000052876	spi1b (ENSOMYG00000043870) #21	MYBPC3 (ENSOMYG00000044004) #22	lgr4 (ENSOMYG00000044482)	mettl15 (ENSOMYG00000044494)	ENSOMYG00000044507	bdnf (ENSOMYG00000036728)	lin7c (ENSOMYG00000036786)	ENSOMYG00000074764	ENSOMYG00000036839	saa (ENSOMYG00000036847)	ENSOMYG00000036856	syt7b (ENSOMYG00000036865)	sdhaf2 (ENSOMYG00000036884)	ENSOMYG00000036896	polr2l (ENSOMYG00000036903)	ENSOMYG00000036946	ext2 (ENSOMYG00000037069)
Oncorhynchus_a	ANCESTRAL SPECIES	28	ENSGT00940000163235.A.a.a.b.c.a	ENSGT00940000156076.a.a.a.a.e.c.a	ENSGT00950000182838.A.a.b.n	ENSGT00950000182885.A.a.f.e.b	ENSGT00940000156912.c.a.b.b	ENSGT00940000158805.a.i	ENSGT00940000159515.c.b.d	ENSGT00940000158300.f.f	ENSGT00390000011846.b	ENSGT00940000155692.j.n	ENSGT00940000155891.c.b.e	ENSGT00940000155755.a.b.g	ENSGT00390000015299.a.a.a.i	ENSGT00940000157349.kb.a #20	ENSGT00940000159754.a.f.b #21	ENSGT00940000157698.b.r #22	ENSGT00940000157925.n.b	ENSGT00390000014756.e.b.a.b	ENSGT00940000159058.d	ENSGT00390000007725.B.d.e.b	ENSGT00940000153222.a.b.b.b.a.h.b	ENSGT00550000074828.a.o	ENSGT00950000182841.b.a.b.a.a.c	ENSGT00390000004737.b.a.m	ENSGT00940000165631.p.b.a.b.a	ENSGT00940000157180.b.d	ENSGT00940000157180.b.c.a.a	ENSGT00390000001149.q	ENSGT00730000110905.a.u	ENSGT00390000007087.gc	ENSGT00940000161192.c.c
Coho salmon	MODERN SPECIES	28	ENSOKIG00005008991	AP2A2 (ENSOKIG00005010027)	tph1a (ENSOKIG00005010267)	kcnc1a (ENSOKIG00005010446)	cd81a (ENSOKIG00005010471)	ENSOKIG00005010507	ANO9 (ENSOKIG00005010938)	tssc4 (ENSOKIG00005011020)	ano5b (ENSOKIG00005011046)	slc17a6b (ENSOKIG00005011199)	GAS2 (ENSOKIG00005011333)	ENSOKIG00005011337	ENSOKIG00005011346	slc39a13 (ENSOKIG00005011353) #20	spi1b (ENSOKIG00005011365) #21	MYBPC3 (ENSOKIG00005011994) #22	lgr4 (ENSOKIG00005019677)	mettl15 (ENSOKIG00005019993)	ENSOKIG00005020007	bdnf (ENSOKIG00005020118)	lin7c (ENSOKIG00005020142)	ENSOKIG00005020308	FTH1 (ENSOKIG00005020323)	ENSOKIG00005020397	syt7b (ENSOKIG00005020424)	ENSOKIG00005001860	sdhaf2 (ENSOKIG00005001872)	CPSF7 (ENSOKIG00005001888)	polr2l (ENSOKIG00005001899)	DAGLA (ENSOKIG00005002001)	ext2 (ENSOKIG00005002273)
Chinook salmon	MODERN SPECIES	3	ENSOTSG00005019789	ENSOTSG00005019800	ENSOTSG00005019832	aktip (ENSOTSG00005019835)	KLHL30 (ENSOTSG00005019844)	rnps1 (ENSOTSG00005019846)	ENSOTSG00005019847	ENSOTSG00005019849	ENSOTSG00005019850	ano5b (ENSOTSG00005019861)	slc17a6b (ENSOTSG00005022984)	GAS2 (ENSOTSG00005023173)	ENSOTSG00005023175	slc39a13 (ENSOTSG00005023177) #20	spi1b (ENSOTSG00005023179) #21	mybpc3 (ENSOTSG00005023184) #22	lgr4 (ENSOTSG00005023192)	mettl15 (ENSOTSG00005023252)	ENSOTSG00005023259	bdnf (ENSOTSG00005023396)	lin7c (ENSOTSG00005023400)	rplp2l (ENSOTSG00005023404)	ENSOTSG00005023413	saa (ENSOTSG00005023421)	ENSOTSG00005023425	syt7b (ENSOTSG00005023462)	sdhaf2 (ENSOTSG00005023465)	CPSF7 (ENSOTSG00005001582)	polr2l (ENSOTSG00005001609)	DAGLA (ENSOTSG00005001617)	ext2 (ENSOTSG00005001642)
Northern pike	MODERN SPECIES	1	ATMIN (ENSELUG00000010232)	cenpn (ENSELUG00000010225)	cmc2 (ENSELUG00000010206)	CDYL2 (ENSELUG00000001080)	MAF (ENSELUG00000010148)	tollip (ENSELUG00000010125)	ENSELUG00000001489	ENSELUG00000028137	ENSELUG00000010053	cd81a (ENSELUG00000009978)	PKP3 (ENSELUG00000009958)	tssc4 (ENSELUG00000009939)	ENSELUG00000009916	slc39a13 (ENSELUG00000009899) #20	spi1b (ENSELUG00000009875) #21	mybpc3 (ENSELUG00000009830) #22	mettl15 (ENSELUG00000009772)	ENSELUG00000009733	bdnf (ENSELUG00000009682)	lin7c (ENSELUG00000009664)	ENSELUG00000026008	sdhaf2 (ENSELUG00000009646)	polr2l (ENSELUG00000009612)	ENSELUG00000009626	DAGLA (ENSELUG00000009546)	ext2 (ENSELUG00000009497)	ALX4 (ENSELUG00000009456)	caprin1a (ENSELUG00000009443)	nucb2a (ENSELUG00000009406)	rps13 (ENSELUG00000028260)	PLEKHA7 (ENSELUG00000009191)
Spotted gar	MODERN SPECIES	666	ptpmt1 (ENSLOCG00000005999) #16	kbtbd4 (ENSLOCG00000006020) #15	ndufs3 (ENSLOCG00000006031) #14	c1qtnf4 (ENSLOCG00000017323)	c6ast1 (ENSLOCG00000006066)	ENSLOCG00000006078	nup160 (ENSLOCG00000006090) #9	ENSLOCG00000006107 #9	fnbp4 (ENSLOCG00000006124) #10	agbl2 (ENSLOCG00000006167) #11	mtch2 (ENSLOCG00000006180) #12	psmc3 (ENSLOCG00000006198) #19	ENSLOCG00000006219	SLC39A13 (ENSLOCG00000006236) #20	spi1b (ENSLOCG00000006249) #21	mybpc3 (ENSLOCG00000006281) #22	MADD (ENSLOCG00000006317) #23	nr1h3 (ENSLOCG00000006349) #24	arl14ep (ENSLOCG00000006362)	mettl15 (ENSLOCG00000006371)	KIF18A (ENSLOCG00000006384)	bdnf (ENSLOCG00000017324)	lgr4 (ENSLOCG00000006401)	CCDC34 (ENSLOCG00000006433)	BBOX1 (ENSLOCG00000006463)	fibinb (ENSLOCG00000006483)	slc5a12 (ENSLOCG00000006496)	ANO3 (ENSLOCG00000006513)	luzp2 (ENSLOCG00000006529)	ENSLOCG00000006548	GAS2 (ENSLOCG00000006569)
Reedfish	MODERN SPECIES	10	rapsn (ENSECRG00000003866) #18	ENSECRG00000022176	ptpmt1 (ENSECRG00000022169) #16	kbtbd4 (ENSECRG00000022162) #15	ndufs3 (ENSECRG00000022150) #14	c1qtnf4 (ENSECRG00000022146)	nup160 (ENSECRG00000022130) #9	ENSECRG00000022117 #33	fnbp4 (ENSECRG00000022102) #10	agbl2 (ENSECRG00000022088) #11	mtch2 (ENSECRG00000022078) #12	psmc3 (ENSECRG00000022063) #19	ENSECRG00000022059	slc39a13 (ENSECRG00000022048) #20	spi1b (ENSECRG00000022042) #21	mybpc3 (ENSECRG00000021995) #22	MADD (ENSECRG00000021795) #23	nr1h3 (ENSECRG00000021704) #24	ARL14EP (ENSECRG00000021693)	FSHB (ENSECRG00000021502)	KCNA4 (ENSECRG00000021459)	ENSECRG00000021453	KIF18A (ENSECRG00000021426)	bdnf (ENSECRG00000021411)	LIN7C (ENSECRG00000021328)	lgr4 (ENSECRG00000021281)	CCDC34 (ENSECRG00000021262)	bbox1 (ENSECRG00000021244)	fibinb (ENSECRG00000021208)	ENSECRG00000021193	slc5a12 (ENSECRG00000020882)